Psyllid ID: psy10852

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560---
Protein Sequence
MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETMPFHSSMKMTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETNGNGDIHNSTPKTETPT
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHHHHcccccccEEEEEEcccccccEEEEEEEccEEEEEEEcEEcccccccEEEccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccccccEEEEEEEcccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccccccEEEEEEccccccEEEEEccEEEEEEccEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHcccccccEEEEEcccccccEEEEEEEccccEEEEEEccccccccEEEEccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccccccEEEEEEccccccEEEEcccccEEEcccccEEEccccccHHHccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccEEEEEEEccccEEEEEEccEEEEEccccEEEccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccHHHHHHHHHccccccEEEEEEcccccccEEEEEEEcccEEEEEEEEccccccccEEEEcccccccHHHHHHHHHHcccccccccccccccccEEEEcccEccccccEccEccccEEEEEEcccccEEEEEcccccEEEEEHHHEEEcccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccEEEEEEccccccEEEEEcccEEEcccccEEEcccccccccccccccccccccccccccccccccHHHHHHHHHcccccEEEEEEEcccccccEEEEEEEccEEEEEEEEEEccccccEEEEEcccccccHHHHHHHccccccccccccccccccccEEEEcccEccccccEccEccccEEEEEEcccccEEEEEcccccEEEEEHHHEEEcccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccEcccccEEEEEEccccccEEEEEcccEEEcccccEEEccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mtgtfdphdrnswyfgMMTRQEAQAILLSekdngaflvrdsntILGNYVLCVKENNKVSHYIINKITnteqqtcykigdktfsdlpSLLAFYKVhyldtsplikpaTKTIEKVIAKydfdgndpddlpfkkndiLIVVSKdeehwwtaqnisgevgsipvpyvqkysegMSILSLRnlhldssshhvpqqqttpvrkthlevklpafarvkqvrvpnaydktalKLEIGDIIKVTKtningqwegelngktghfpfthvefiptnetmpfhssmkmtgtfdphdrnswyfgMMTRQEAQAILLSekdngaflvrdsntILGNYVLCVKENNKVSHYIINKITnteqqtcykigdktfsdlpSLLAFYKVhyldtsplikpaTKTIEKVIAKydfdgndpddlpfkkndiLIVVSKdeehwwtaqnisgevgsipvpyvqkysegMSILSLRnlhldssshhvpqqqttpvrkthlevklpafarvkqvrvpnaydktalKLEIGDIIKVTKtningqwegelngktghfpfthvefiptnetsvetngngdihnstpktetpt
Flexible Loop (DISEMBL)
mtgtfdphdrnswYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLdtsplikpaTKTIEKVIAKYDFdgndpddlpfkKNDILIVVSKDEEHWWTaqnisgevgsipVPYVQKYSEGMSILSLRNLHLDSSSHhvpqqqttpvrkTHLEVKLpafarvkqvrvpnaydktalkleigdiikVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETMPFHSSMKMTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLdtsplikpaTKTIEKVIAKYDFdgndpddlpfkKNDILIVVSKDEEHWWTaqnisgevgsipVPYVQKYSEGMSILSLRNLHLDSSSHhvpqqqttpvrkTHLEVKLpafarvkqvrvpnaydktalkleigdiikVTKTNINGQWEGELNGKTGHFPFTHVEFIPTnetsvetngngdihnstpktetpt
Low Complexity Region (SEG)
MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETMPFHSSMKMTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETNGNGDIHNSTPKTETPT
Disordered region (IsUnstruct)
***********SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLH******************THLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETMPFH*****TGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLH******************THLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP*************************
Disordered Region (DISOPRED)
***T**PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDF*********FKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSI*SL***HLDSS********************LPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETMPFHSSMKMTGTFDPHDRNSWYFGM*******************LVRDSNTILGNYVLCVKENNKVSHYIIN*I*NTEQQTCYKIGDKT*****************TSPLIKPATKTIEKVIAKYDFDG***********DILIVVSKDEE*WWTAQNISGEVGSIPVPYVQ********************************************RVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHV*****************************
Disordered Region (DISEMBL)
MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHLD**************RKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETMPFHSSMKMTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHLD**************RKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETNGNGDIH**********
Disordered Region (DISPRO)
***********SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE************************************PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT**********************SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE*********************************VKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP*************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETMPFHSSMKMTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETNGNGDIHNSTPKTETPT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	563	2.2.26 [Sep-21-2011]
Q9XYM0	271	Adapter molecule Crk OS=D	yes	N/A	0.463	0.963	0.601	8e-93
P87378	296	Adapter molecule crk OS=X	N/A	N/A	0.477	0.908	0.5	1e-72
Q63768	304	Adapter molecule crk OS=R	yes	N/A	0.463	0.858	0.461	9e-68
P46108	304	Adapter molecule crk OS=H	yes	N/A	0.463	0.858	0.461	9e-68
Q64010	304	Adapter molecule crk OS=M	yes	N/A	0.463	0.858	0.461	1e-67
P46109	303	Crk-like protein OS=Homo	no	N/A	0.456	0.848	0.465	2e-67
P47941	303	Crk-like protein OS=Mus m	no	N/A	0.456	0.848	0.465	3e-67
Q04929	305	Adapter molecule crk OS=G	yes	N/A	0.463	0.855	0.449	4e-67
Q5U2U2	303	Crk-like protein OS=Rattu	no	N/A	0.456	0.848	0.462	5e-67
P05433	440	P47(GAG-CRK) protein OS=A	N/A	N/A	0.303	0.388	0.434	3e-42

>sp|Q9XYM0|CRK_DROME Adapter molecule Crk OS=Drosophila melanogaster GN=Crk PE=2 SV=1

 Score =  341 bits (875), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 160/266 (60%), Positives = 209/266 (78%), Gaps = 5/266 (1%)

Query: 279 TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 338
           TFD  DRNSWYFG M+RQ+A  +L++E++ G FLVRDSN+I G+YVLCV+E+ KVS+YII
Sbjct: 3   TFDVSDRNSWYFGPMSRQDATEVLMNERERGVFLVRDSNSIAGDYVLCVREDTKVSNYII 62

Query: 339 NKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFDGND 398
           NK+   + Q  Y+IGD++F +LP LL FY +HYLDT+PL +PA + +EKVI K+DF G+D
Sbjct: 63  NKVQQ-QDQIVYRIGDQSFDNLPKLLTFYTLHYLDTTPLKRPACRRVEKVIGKFDFVGSD 121

Query: 399 PDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSL-RNLHLDS 457
            DDLPF++ ++L +V KDE+ WWTA+N SG++G IPVPY+Q+Y + M   ++ +N    S
Sbjct: 122 QDDLPFQRGEVLTIVRKDEDQWWTARNSSGKIGQIPVPYIQQYDDYMDEDAIDKNEPSIS 181

Query: 458 SSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQ 517
            S +V +   + +++T L  KLPA+ARVKQ RVPNAYDKTALKLEIGDIIKVTKTNINGQ
Sbjct: 182 GSSNVFE---STLKRTDLNRKLPAYARVKQSRVPNAYDKTALKLEIGDIIKVTKTNINGQ 238

Query: 518 WEGELNGKTGHFPFTHVEFIPTNETS 543
           WEGELNGK GHFPFTHVEF+   + S
Sbjct: 239 WEGELNGKNGHFPFTHVEFVDDCDLS 264

Adapter protein which interacts with C-terminal portion of mbc, homolog of human DOCK180. May play a role in cellular processes throughout development.
Drosophila melanogaster (taxid: 7227)

>sp|P87378|CRK_XENLA Adapter molecule crk OS=Xenopus laevis GN=crk PE=2 SV=1

 Score =  274 bits (700), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 148/296 (50%), Positives = 183/296 (61%), Gaps = 27/296 (9%)

Query: 1   MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
           M G FD  DR SWY+G   RQEA  +L  ++ +G FLVRDS TI G+YVL V EN+KVSH
Sbjct: 1   MAGNFDSEDRASWYWGKQNRQEAVNLLQGQR-HGVFLVRDSTTIPGDYVLSVSENSKVSH 59

Query: 61  YIINKITNTEQ-------QTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKT---- 109
           YIIN +TN  Q       Q+ ++IGD+ F  LP+LL FYK+HYLDT+ LI+P +K+    
Sbjct: 60  YIINSVTNNRQSSTAGMVQSRFRIGDQEFDSLPTLLEFYKIHYLDTTTLIEPVSKSKQSG 119

Query: 110 -------IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPY 162
                  +E + A +DF GND +DLPFKK DIL +  K EE WW A++  G  G IPVPY
Sbjct: 120 VIQRQEEVEYLRALFDFIGNDDEDLPFKKGDILRIREKPEEQWWNAEDSDGRRGMIPVPY 179

Query: 163 VQKY----SEGMSILS--LRNLHLDSSSHHVPQQQTTPVRKTHLE--VKLPAFARVKQVR 214
           V+KY    S G +++     N H        P     P   T L      P FARV Q R
Sbjct: 180 VEKYRPPSSPGSALIGGNQENSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIFARVIQKR 239

Query: 215 VPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETMPF 270
           VPNAYDKTAL LE+GD++KVTK N++GQWEGE NGK GHFPFTHV  +  N    F
Sbjct: 240 VPNAYDKTALALEVGDLVKVTKINVSGQWEGECNGKYGHFPFTHVRLLEQNPEEDF 295

Required for apoptosis in Xenopus egg extracts. May mediate attachment-induced mapk8 activation, membrane ruffling and cell motility in a Rac-dependent manner. May regulate the efna5-epha3 signaling.

Xenopus laevis (taxid: 8355)

>sp|Q63768|CRK_RAT Adapter molecule crk OS=Rattus norvegicus GN=Crk PE=1 SV=1

 Score =  258 bits (659), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 136/295 (46%), Positives = 180/295 (61%), Gaps = 34/295 (11%)

Query: 1   MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
           M G FD  +R+SWY+G ++RQEA A+L  ++ +G FLVRDS+T  G+YVL V EN++VSH
Sbjct: 1   MAGNFDSEERSSWYWGRLSRQEAVALLQGQR-HGVFLVRDSSTSPGDYVLSVSENSRVSH 59

Query: 61  YIINKITNTEQQ-------------TCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPAT 107
           YIIN                     +  +IGD+ F  LP+LL FYK+HYLDT+ LI+P +
Sbjct: 60  YIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVS 119

Query: 108 KT------------IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEV 155
           ++             E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ 
Sbjct: 120 RSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKR 179

Query: 156 GSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVP--QQQTTPVRKTHLEVKLP------AF 207
           G IPVPYV+KY    + +S         SH  P    +  P  +  +   LP       +
Sbjct: 180 GMIPVPYVEKYRPASASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIY 239

Query: 208 ARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
           ARV Q RVPNAYDKTAL LE+G+++KVTK N++GQWEGE NGK GHFPFTHV  +
Sbjct: 240 ARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLL 294

The Crk-I and Crk-II forms differ in their biological activities. Crk-II has less transforming activity than Crk-I. Crk-II mediates attachment-induced MAPK8 activation, membrane ruffling and cell motility in a Rac-dependent manner. Involved in phagocytosis of apoptotic cells and cell motility via its interaction with DOCK1 and DOCK4. May regulate the EFNA5-EPHA3 signaling.

Rattus norvegicus (taxid: 10116)

>sp|P46108|CRK_HUMAN Adapter molecule crk OS=Homo sapiens GN=CRK PE=1 SV=2

 Score =  258 bits (659), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 136/295 (46%), Positives = 180/295 (61%), Gaps = 34/295 (11%)

Query: 1   MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
           M G FD  +R+SWY+G ++RQEA A+L  ++ +G FLVRDS+T  G+YVL V EN++VSH
Sbjct: 1   MAGNFDSEERSSWYWGRLSRQEAVALLQGQR-HGVFLVRDSSTSPGDYVLSVSENSRVSH 59

Query: 61  YIINKITNTEQQ-------------TCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPAT 107
           YIIN                     +  +IGD+ F  LP+LL FYK+HYLDT+ LI+P +
Sbjct: 60  YIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVS 119

Query: 108 KT------------IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEV 155
           ++             E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ 
Sbjct: 120 RSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKR 179

Query: 156 GSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVP--QQQTTPVRKTHLEVKLP------AF 207
           G IPVPYV+KY    + +S         SH  P    +  P  +  +   LP       +
Sbjct: 180 GMIPVPYVEKYRPASASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIY 239

Query: 208 ARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
           ARV Q RVPNAYDKTAL LE+G+++KVTK N++GQWEGE NGK GHFPFTHV  +
Sbjct: 240 ARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLL 294

The Crk-I and Crk-II forms differ in their biological activities. Crk-II has less transforming activity than Crk-I. Crk-II mediates attachment-induced MAPK8 activation, membrane ruffling and cell motility in a Rac-dependent manner. Involved in phagocytosis of apoptotic cells and cell motility via its interaction with DOCK1 and DOCK4. May regulate the EFNA5-EPHA3 signaling.

Homo sapiens (taxid: 9606)

>sp|Q64010|CRK_MOUSE Adapter molecule crk OS=Mus musculus GN=Crk PE=1 SV=1

 Score =  258 bits (658), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 136/295 (46%), Positives = 176/295 (59%), Gaps = 34/295 (11%)

Query: 1   MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
           M G FD  +R+SWY+G ++RQEA A+L  ++ +G FLVRDS+T  G+YVL V EN++VSH
Sbjct: 1   MAGNFDSEERSSWYWGRLSRQEAVALLQGQR-HGVFLVRDSSTSPGDYVLSVSENSRVSH 59

Query: 61  YIINKITNTEQQ-------------TCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPAT 107
           YIIN                     +  +IGD+ F  LP+LL FYK+HYLDT+ LI+P  
Sbjct: 60  YIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVA 119

Query: 108 KT------------IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEV 155
           ++             E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ 
Sbjct: 120 RSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKR 179

Query: 156 GSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPA--------F 207
           G IPVPYV+KY    + +S         SH  P     P       V  P         +
Sbjct: 180 GMIPVPYVEKYRPASASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIY 239

Query: 208 ARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
           ARV Q RVPNAYDKTAL LE+G+++KVTK N++GQWEGE NGK GHFPFTHV  +
Sbjct: 240 ARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLL 294

The Crk-I and Crk-II forms differ in their biological activities. Crk-II has less transforming activity than Crk-I. Crk-II mediates attachment-induced MAPK8 activation, membrane ruffling and cell motility in a Rac-dependent manner. Involved in phagocytosis of apoptotic cells and cell motility via its interaction with DOCK1 and DOCK4. May regulate the EFNA5-EPHA3 signaling.

Mus musculus (taxid: 10090)

>sp|P46109|CRKL_HUMAN Crk-like protein OS=Homo sapiens GN=CRKL PE=1 SV=1

 Score =  257 bits (656), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 141/303 (46%), Positives = 186/303 (61%), Gaps = 46/303 (15%)

Query: 2   TGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 61
           +  FD  DR++WY G ++RQEAQ  L  ++ +G FLVRDS+T  G+YVL V EN++VSHY
Sbjct: 3   SARFDSSDRSAWYMGPVSRQEAQTRLQGQR-HGMFLVRDSSTCPGDYVLSVSENSRVSHY 61

Query: 62  IINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK------------- 108
           IIN + N      +KIGD+ F  LP+LL FYK+HYLDT+ LI+PA +             
Sbjct: 62  IINSLPNRR----FKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAPRYPSPPMGSVSAPN 117

Query: 109 ------TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPY 162
                  +E V   YDF GND +DLPFKK +IL+++ K EE WW+A+N  G VG IPVPY
Sbjct: 118 LPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPY 177

Query: 163 VQKYSEGMSILSLRNLHLDSSSHHVPQ--------QQTTPVRKTHLEVKL---------- 204
           V+K     S    ++ + +S+S+ +P+        Q TTP+                   
Sbjct: 178 VEKLVR--SSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQN 235

Query: 205 -PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE-FI 262
            P FA+  Q RVP AYDKTAL LE+GDI+KVT+ NINGQWEGE+NG+ G FPFTHV+ F 
Sbjct: 236 GPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFD 295

Query: 263 PTN 265
           P N
Sbjct: 296 PQN 298

May mediate the transduction of intracellular signals.

Homo sapiens (taxid: 9606)

>sp|P47941|CRKL_MOUSE Crk-like protein OS=Mus musculus GN=Crkl PE=1 SV=2

 Score =  256 bits (655), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 141/303 (46%), Positives = 186/303 (61%), Gaps = 46/303 (15%)

Query: 2   TGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 61
           +  FD  DR++WY G +TRQEAQ  L  ++ +G FLVRDS+T  G+YVL V EN++VSHY
Sbjct: 3   SARFDSSDRSAWYMGPVTRQEAQTRLQGQR-HGMFLVRDSSTCPGDYVLSVSENSRVSHY 61

Query: 62  IINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK------------- 108
           IIN + N      +KIGD+ F  LP+LL FYK+HYLDT+ LI+PA +             
Sbjct: 62  IINSLPNRR----FKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAPRYPSPPVGSVSAPN 117

Query: 109 ------TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPY 162
                  +E V   YDF GND +DLPFKK ++L+++ K EE WW+A+N  G VG IPVPY
Sbjct: 118 LPTAEENLEYVRTLYDFPGNDAEDLPFKKGELLVIIEKPEEQWWSARNKDGRVGMIPVPY 177

Query: 163 VQKYSEGMSILSLRNLHLDSSSHHVPQ--------QQTTPVRKTHLEVKL---------- 204
           V+K     S    ++ + +S+S+ +P+        Q TTP+                   
Sbjct: 178 VEKLVR--SSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPTVASTPGAAINPLPSTQN 235

Query: 205 -PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE-FI 262
            P FA+  Q RVP AYDKTAL LE+GDI+KVT+ NINGQWEGE+NG+ G FPFTHV+ F 
Sbjct: 236 GPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFD 295

Query: 263 PTN 265
           P N
Sbjct: 296 PQN 298

May mediate the transduction of intracellular signals.

Mus musculus (taxid: 10090)

>sp|Q04929|CRK_CHICK Adapter molecule crk OS=Gallus gallus GN=CRK PE=1 SV=1

 Score =  256 bits (654), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 133/296 (44%), Positives = 183/296 (61%), Gaps = 35/296 (11%)

Query: 1   MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
           M G FD  DR SWY+G ++R +A ++L  ++ +G FLVRDS +I G++VL V E+++VSH
Sbjct: 1   MAGQFDSEDRGSWYWGRLSRGDAVSLLQGQR-HGTFLVRDSGSIPGDFVLSVSESSRVSH 59

Query: 61  YIINKITNTEQQ--------------TCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPA 106
           YI+N +     +              T ++IGD+ F  LPSLL FYK+HYLDT+ LI+P 
Sbjct: 60  YIVNSLGPAGGRRAGGEGPGAPGLNPTRFRIGDQEFDSLPSLLEFYKIHYLDTTTLIEPV 119

Query: 107 TKT------------IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGE 154
           +++            +E V A +DF+GND +DLPFKK DIL +  K EE WW A+++ G+
Sbjct: 120 SRSRQNSGVILRQEEVEYVRALFDFNGNDDEDLPFKKGDILKIRDKPEEQWWNAEDMDGK 179

Query: 155 VGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVP--QQQTTPVRKTHLEVKLPA------ 206
            G IPVPYV+K     + +S        SSH  P    +  P  +  +   LP       
Sbjct: 180 RGMIPVPYVEKCRPSSASVSTLTGGNQDSSHPQPLGGPEPGPYAQPSINTPLPNLQNGPF 239

Query: 207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
           +ARV Q RVPNAYDKTAL LE+G+++KVTK N++GQWEGE NGK GHFPFTHV  +
Sbjct: 240 YARVIQKRVPNAYDKTALALEVGELVKVTKINMSGQWEGECNGKRGHFPFTHVRLL 295

May mediate attachment-induced MAPK8 activation, membrane ruffling and cell motility in a Rac-dependent manner. May regulate the EFNA5-EPHA3 signaling.

Gallus gallus (taxid: 9031)

>sp|Q5U2U2|CRKL_RAT Crk-like protein OS=Rattus norvegicus GN=Crkl PE=1 SV=1

 Score =  255 bits (652), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 140/303 (46%), Positives = 186/303 (61%), Gaps = 46/303 (15%)

Query: 2   TGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 61
           +  FD  DR++WY G ++RQEAQ  L  ++ +G FLVRDS+T  G+YVL V EN++VSHY
Sbjct: 3   SARFDSSDRSAWYMGPVSRQEAQTRLQGQR-HGMFLVRDSSTCPGDYVLSVSENSRVSHY 61

Query: 62  IINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK------------- 108
           IIN + N      +KIGD+ F  LP+LL FYK+HYLDT+ LI+PA +             
Sbjct: 62  IINSLPNRR----FKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAPRYPNPPMGSVSAPN 117

Query: 109 ------TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPY 162
                  +E V   YDF GND +DLPFKK ++L+++ K EE WW+A+N  G VG IPVPY
Sbjct: 118 LSTAEENLEYVRTLYDFPGNDAEDLPFKKGELLVIIEKPEEQWWSARNKDGRVGMIPVPY 177

Query: 163 VQKYSEGMSILSLRNLHLDSSSHHVPQ--------QQTTPVRKTHLEVKL---------- 204
           V+K     S    ++ + +S+S+ +P+        Q TTP+                   
Sbjct: 178 VEKLVR--SSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPTVASTPGAAINPLPSTQN 235

Query: 205 -PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE-FI 262
            P FA+  Q RVP AYDKTAL LE+GDI+KVT+ NINGQWEGE+NG+ G FPFTHV+ F 
Sbjct: 236 GPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFD 295

Query: 263 PTN 265
           P N
Sbjct: 296 PQN 298

May mediate the transduction of intracellular signals.

Rattus norvegicus (taxid: 10116)

>sp|P05433|GAGC_AVISC P47(GAG-CRK) protein OS=Avian sarcoma virus (strain CT10) PE=4 SV=1

 Score =  173 bits (439), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 86/198 (43%), Positives = 121/198 (61%), Gaps = 27/198 (13%)

Query: 269 PFHSSMKMTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVK 328
           P   +  M G FD  DR SWY+G ++R +A ++L  ++ +G FLVRDS +I G++VL V 
Sbjct: 229 PAGGAALMAGQFDSEDRGSWYWGRLSRGDAVSLLQGQR-HGTFLVRDSGSIPGDFVLSVS 287

Query: 329 ENNKVSHYIINKITNTEQQ--------------TCYKIGDKTFSDLPSLLAFYKVHYLDT 374
           E+++VSHYI+N +     +              T + IGD+ F  LPSLL FYK+HYLDT
Sbjct: 288 ESSRVSHYIVNSLGPAGGRRAGGEGPGAPGLNPTRFLIGDQVFDSLPSLLEFYKIHYLDT 347

Query: 375 SPLIKPATKT------------IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWT 422
           + LI+P +++            +E V A +DF GND  DLPFKK DIL +  K EE WW 
Sbjct: 348 TTLIEPVSRSRQNSGVILRQEEVEYVRALFDFKGNDDGDLPFKKGDILKIRDKPEEQWWN 407

Query: 423 AQNISGEVGSIPVPYVQK 440
           A+++ G+ G IPVPYV+K
Sbjct: 408 AEDMDGKRGMIPVPYVEK 425

Galliformes (taxid: 8976)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	563
91076140	268	PREDICTED: similar to Adapter molecule C	0.463	0.973	0.642	2e-97
242013819	263	Adapter molecule Crk, putative [Pediculu	0.460	0.984	0.657	5e-97
328714409	267	PREDICTED: adapter molecule Crk-like iso	0.445	0.940	0.661	3e-96
307177324	287	Adapter molecule Crk [Camponotus florida	0.472	0.926	0.611	4e-95
332024999	287	Adapter molecule Crk [Acromyrmex echinat	0.472	0.926	0.600	2e-94
307194538	290	Adapter molecule Crk [Harpegnathos salta	0.472	0.917	0.601	3e-94
322786985	287	hypothetical protein SINV_05509 [Solenop	0.472	0.926	0.600	6e-94
194913661	269	GG16379 [Drosophila erecta] gi|190647961	0.461	0.966	0.6	4e-92
156547828	298	PREDICTED: adapter molecule Crk-like [Na	0.463	0.875	0.574	6e-92
195450666	280	GK13611 [Drosophila willistoni] gi|19416	0.447	0.9	0.611	2e-91

>gi|91076140|ref|XP_970221.1| PREDICTED: similar to Adapter molecule Crk [Tribolium castaneum] gi|270014714|gb|EFA11162.1| hypothetical protein TcasGA2_TC004767 [Tribolium castaneum]

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 169/263 (64%), Positives = 213/263 (80%), Gaps = 2/263 (0%)

Query: 1   MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
           M  TFD  D++SWYFG ++R+EA  +L++E+  G FLVRDS T +G++VLCVKE++KVSH
Sbjct: 1   MASTFDHEDKDSWYFGPISRKEATDLLMAERGGGVFLVRDSATCVGDFVLCVKEDSKVSH 60

Query: 61  YIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFD 120
           YIINK+  + QQ  Y+IGD+ F+DLPSLL+FYK+HYLDT+PLI+PA+K +EKVIAK+DF+
Sbjct: 61  YIINKMQES-QQIKYRIGDQIFADLPSLLSFYKLHYLDTTPLIRPASKKVEKVIAKFDFE 119

Query: 121 GNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSL-RNLH 179
           G DPDDL F+K +IL +V+KDEE WWTA N +G+ GSIPVPYVQKY EG +   + R   
Sbjct: 120 GQDPDDLVFRKGEILTIVAKDEEQWWTAVNSAGQRGSIPVPYVQKYEEGQAPTEIPRPGS 179

Query: 180 LDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI 239
             S +    QQ  T ++++ ++ KLPA ARVKQVRVPNAYDKTALKLEIGDII VTKTNI
Sbjct: 180 GGSVTSSTQQQAETAMKRSQMQRKLPAKARVKQVRVPNAYDKTALKLEIGDIITVTKTNI 239

Query: 240 NGQWEGELNGKTGHFPFTHVEFI 262
           NGQWEGELNGKTG+FPFTHVEF+
Sbjct: 240 NGQWEGELNGKTGYFPFTHVEFL 262

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242013819|ref|XP_002427598.1| Adapter molecule Crk, putative [Pediculus humanus corporis] gi|212512013|gb|EEB14860.1| Adapter molecule Crk, putative [Pediculus humanus corporis]

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 173/263 (65%), Positives = 209/263 (79%), Gaps = 4/263 (1%)

Query: 1   MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
           M  TFDP DR SWYFG M+RQ+A  +L+SEK+ G FL+RDS +I G+YVLCV+E++KVSH
Sbjct: 1   MASTFDPFDRTSWYFGQMSRQDATDLLMSEKEGGVFLIRDSISISGDYVLCVREDSKVSH 60

Query: 61  YIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFD 120
           YIINKI   EQ T Y+IGD+ F DLPSLL FYK+HYLDT+PLIKPA K +EKVIAKYDFD
Sbjct: 61  YIINKIQQGEQ-TIYRIGDQKFPDLPSLLTFYKLHYLDTTPLIKPAPKRVEKVIAKYDFD 119

Query: 121 GNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHL 180
           GNDPDDLPFKK ++L++VSKDE+ WWTA+N  G+ GSIPVPY+Q+Y E    ++  + H 
Sbjct: 120 GNDPDDLPFKKGEVLLIVSKDEDQWWTARNSLGKTGSIPVPYIQRYEENQPYIT--DGHR 177

Query: 181 DSS-SHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI 239
            SS S ++    + P +K +++ KLPA ARVKQ RVPNAYDKTALKLEIGD I VTK NI
Sbjct: 178 PSSGSGNLVAVPSEPSKKANIQRKLPALARVKQARVPNAYDKTALKLEIGDTITVTKMNI 237

Query: 240 NGQWEGELNGKTGHFPFTHVEFI 262
           NGQWEGELNGK GHFPFTH+  I
Sbjct: 238 NGQWEGELNGKYGHFPFTHLCLI 260

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328714409|ref|XP_001943269.2| PREDICTED: adapter molecule Crk-like isoform 1 [Acyrthosiphon pisum] gi|328714411|ref|XP_003245351.1| PREDICTED: adapter molecule Crk-like isoform 2 [Acyrthosiphon pisum]

 Score =  358 bits (920), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 172/260 (66%), Positives = 212/260 (81%), Gaps = 9/260 (3%)

Query: 4   TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
            FDP+++ SWYFG M+R EA  +L+ E++ G FL+RDS +I G+YVLCV+E++KVSHYII
Sbjct: 5   CFDPNNKASWYFGQMSRIEASDLLMGERECGTFLIRDSLSIQGDYVLCVREDSKVSHYII 64

Query: 64  NKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFDGND 123
           NKI     +T Y+IGD+ F+DLPSLLAFYK+HYLDT+PL+KPA K IEKV+AKYDF GND
Sbjct: 65  NKI-QEHNETKYRIGDQMFADLPSLLAFYKLHYLDTTPLLKPAVKPIEKVVAKYDFVGND 123

Query: 124 PDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSS 183
            DDLPF+K DIL ++ KDEE WWTA+NI G++GSIPVPYVQKY +G   L +++      
Sbjct: 124 QDDLPFRKGDILTILVKDEEQWWTAKNIMGQMGSIPVPYVQKY-DGNPPLPIKD------ 176

Query: 184 SHHVP-QQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQ 242
           S+ +P     + +R++ L+ KLPA ARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQ
Sbjct: 177 SNQIPGSNNESTLRRSSLQKKLPALARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQ 236

Query: 243 WEGELNGKTGHFPFTHVEFI 262
           WEGELNGKTGHFPFTHVEF+
Sbjct: 237 WEGELNGKTGHFPFTHVEFV 256

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307177324|gb|EFN66497.1| Adapter molecule Crk [Camponotus floridanus]

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 173/283 (61%), Positives = 214/283 (75%), Gaps = 17/283 (6%)

Query: 276 MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 335
           M  TFD +D++SWYFG M+RQ+A  +L+ EK+ G FLVRDS +I G++VLCV+E++KVSH
Sbjct: 1   MAATFDQYDKSSWYFGAMSRQDASDLLMGEKEGGVFLVRDSTSIHGDFVLCVREDSKVSH 60

Query: 336 YIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFD 395
           YIINKI   +Q   Y+IGD+ F D+PSLLAFYK+HYLDT+PLI+PA K  ++VIAKYDFD
Sbjct: 61  YIINKIQQGDQ-IRYRIGDQMFPDIPSLLAFYKLHYLDTTPLIRPAPKKTQRVIAKYDFD 119

Query: 396 GNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHL 455
           GND DDLPF+K DIL V+SKDEE WWTA+N  G+ GSIPVPYVQKY E   ++   N   
Sbjct: 120 GNDSDDLPFRKGDILTVISKDEEQWWTARNSVGQTGSIPVPYVQKYDEDNHMIIENNSRP 179

Query: 456 DSS-----------SHHVPQQ----QTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALK 500
           +S            +  V Q     Q T  R+++++  LPAFA+VKQ RVPNAYDKTALK
Sbjct: 180 ESGGSSGSNSNSGPTTQVSQAEITGQATVTRRSNIQRTLPAFAKVKQARVPNAYDKTALK 239

Query: 501 LEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS 543
           LE+GD+IKVTKTNINGQWEGEL+GK GHFPFTHVEF+  NET 
Sbjct: 240 LEVGDMIKVTKTNINGQWEGELHGKVGHFPFTHVEFV-DNETG 281

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024999|gb|EGI65186.1| Adapter molecule Crk [Acromyrmex echinatior]

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 170/283 (60%), Positives = 213/283 (75%), Gaps = 17/283 (6%)

Query: 276 MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 335
           M  TFD +D++SWYFG M+RQ+A  +L+ EK+ G FLVRDS +I G++VLCV+E++KVSH
Sbjct: 1   MAATFDQYDKSSWYFGAMSRQDASDLLMGEKEGGVFLVRDSTSIHGDFVLCVREDSKVSH 60

Query: 336 YIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFD 395
           YIINKI   +Q   Y+IGD+ F D+PSLLAFYK+HYLDT+PLI+PA K  ++VIAKYDF+
Sbjct: 61  YIINKIQQGDQ-IRYRIGDQMFPDIPSLLAFYKLHYLDTTPLIRPAPKKTQRVIAKYDFE 119

Query: 396 GNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHL 455
           GND +DLPF+K DIL V+SKDEE WWTA+N  G+ GSIPVPYVQKY +   ++   N   
Sbjct: 120 GNDSEDLPFRKGDILTVISKDEEQWWTARNSVGQTGSIPVPYVQKYDDDSHMIIENNSRP 179

Query: 456 DSS---------------SHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALK 500
           +S                SH     Q T  R+++++  LPAFA+VKQ RVPNAYDKTALK
Sbjct: 180 ESGGSSGSNSNSGPTSQVSHTETTGQATVTRRSNIQRTLPAFAKVKQARVPNAYDKTALK 239

Query: 501 LEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS 543
           LE+GD+IKVTKTNINGQWEGEL+GK GHFPFTHVEF+  NET 
Sbjct: 240 LEVGDMIKVTKTNINGQWEGELHGKVGHFPFTHVEFV-DNETG 281

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307194538|gb|EFN76830.1| Adapter molecule Crk [Harpegnathos saltator]

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 172/286 (60%), Positives = 217/286 (75%), Gaps = 20/286 (6%)

Query: 276 MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 335
           M  TFD +D++SWYFG M+RQ+A  +L+ EK+ G FLVRDS +I G++VLCV+E++KVSH
Sbjct: 1   MAATFDQYDKSSWYFGAMSRQDASDLLMGEKEGGVFLVRDSTSIHGDFVLCVREDSKVSH 60

Query: 336 YIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFD 395
           YIINKI   +Q   Y+IGD+ F D+PSLLAFYK+HYLDT+PLI+PA K  +++IAKYDF+
Sbjct: 61  YIINKIQQGDQ-VRYRIGDQMFPDIPSLLAFYKLHYLDTTPLIRPALKKTQRIIAKYDFE 119

Query: 396 GNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHL 455
           GNDPDDLPF+K +IL VVSKDEE WWTA+N  G++GS+PVPYVQKY E   ++   N   
Sbjct: 120 GNDPDDLPFRKGEILTVVSKDEEQWWTARNSLGQIGSVPVPYVQKYDEDNHMIIENNSRP 179

Query: 456 D-----------SSSHHVPQQ-------QTTPVRKTHLEVKLPAFARVKQVRVPNAYDKT 497
           +            S+  VP +        TT  R+++++  LPAFA+VKQ RVPNAYDKT
Sbjct: 180 ESGGSSGSNSNSGSATQVPHETTAGQATTTTVTRRSNIQRTLPAFAKVKQARVPNAYDKT 239

Query: 498 ALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS 543
           ALKLE+GDIIKVTKTNINGQWEGEL+GK GHFPFTHVEF+  NET 
Sbjct: 240 ALKLEVGDIIKVTKTNINGQWEGELHGKVGHFPFTHVEFV-DNETG 284

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322786985|gb|EFZ13209.1| hypothetical protein SINV_05509 [Solenopsis invicta]

 Score =  351 bits (901), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 170/283 (60%), Positives = 212/283 (74%), Gaps = 17/283 (6%)

Query: 276 MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 335
           M  TFD +D++SWYFG M+RQ+A  +L+ EK+ G FLVRDS +I G++VLCV+E++KVSH
Sbjct: 1   MAATFDQYDKSSWYFGAMSRQDASDLLMGEKEGGVFLVRDSTSIHGDFVLCVREDSKVSH 60

Query: 336 YIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFD 395
           YIINKI   +Q   Y+IGD+ F D+PSLLAFYK+HYLDT+PLI+PA K  ++VIAKYDF+
Sbjct: 61  YIINKIQQGDQ-IRYRIGDQMFPDIPSLLAFYKLHYLDTTPLIRPAPKKTQRVIAKYDFE 119

Query: 396 GNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHL 455
           GND +DLPF+K DIL V+SKDEE WWTA+N  G+ GSIPVPYVQKY +   ++   N   
Sbjct: 120 GNDSEDLPFRKGDILTVISKDEEQWWTARNSVGQTGSIPVPYVQKYDDDNHMIIENNSRP 179

Query: 456 DSS---------------SHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALK 500
           +S                SH     Q T  R+ +++  LPAFA+VKQ RVPNAYDKTALK
Sbjct: 180 ESGGSSGSNSNSGPTSQVSHTESTGQATVTRRPNIQRTLPAFAKVKQARVPNAYDKTALK 239

Query: 501 LEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS 543
           LE+GD+IKVTKTNINGQWEGEL+GK GHFPFTHVEF+  NET 
Sbjct: 240 LEVGDMIKVTKTNINGQWEGELHGKVGHFPFTHVEFV-DNETG 281

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194913661|ref|XP_001982745.1| GG16379 [Drosophila erecta] gi|190647961|gb|EDV45264.1| GG16379 [Drosophila erecta]

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 159/265 (60%), Positives = 206/265 (77%), Gaps = 5/265 (1%)

Query: 279 TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 338
           TFD  DRNSWYFG M+RQ+A  +L++E++ G FLVRDSN+I G+YVLCV+E+ KVS+YII
Sbjct: 3   TFDVSDRNSWYFGSMSRQDATEVLMNERERGVFLVRDSNSIAGDYVLCVREDTKVSNYII 62

Query: 339 NKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFDGND 398
           NK+   + QT Y+IGD++F +LP LL FY +HYLDT+PL +PA K +EKV+ K+DF G+D
Sbjct: 63  NKVQQ-QDQTVYRIGDQSFENLPKLLTFYTLHYLDTTPLKRPACKRVEKVMGKFDFVGSD 121

Query: 399 PDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSS 458
            DDLPF++ ++L +V KDE+ WWTA+N SG++G IPVPY+Q+Y + M   ++       S
Sbjct: 122 QDDLPFQRGEVLTIVRKDEDQWWTARNSSGKIGQIPVPYIQQYDDYMDENAIDKSEPSGS 181

Query: 459 SHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQW 518
           S+       + +++T L  KLPA+ARVKQ RVPNAYDKTALKLEIGDIIKVTKTNINGQW
Sbjct: 182 SNMF----GSTLKRTDLNRKLPAYARVKQSRVPNAYDKTALKLEIGDIIKVTKTNINGQW 237

Query: 519 EGELNGKTGHFPFTHVEFIPTNETS 543
           EGELNGK GHFPFTHVEF+   + S
Sbjct: 238 EGELNGKNGHFPFTHVEFVDNCDLS 262

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156547828|ref|XP_001600055.1| PREDICTED: adapter molecule Crk-like [Nasonia vitripennis]

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 162/282 (57%), Positives = 207/282 (73%), Gaps = 21/282 (7%)

Query: 1   MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
           M GTFD +D++SWYFG M+RQ+A  +L+SEK+ G FLVRDS +I G++VLCV+E++KVSH
Sbjct: 1   MAGTFDQNDKSSWYFGAMSRQDASDLLMSEKEGGVFLVRDSISIQGDFVLCVREDSKVSH 60

Query: 61  YIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFD 120
           YIINKI   +Q   Y+IGD+ F D+P+LLAFYK+HYLDT+PLI+PA + I++VIA+YDFD
Sbjct: 61  YIINKIQQGDQ-IRYRIGDQIFPDIPNLLAFYKLHYLDTTPLIRPAPRKIQRVIARYDFD 119

Query: 121 GNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS------------- 167
           GNDPDDLPF+K +IL ++SKDEE WWTA+N  G+ GS+PVPYVQKY              
Sbjct: 120 GNDPDDLPFRKGEILTIISKDEEQWWTAKNSLGQTGSVPVPYVQKYQDDDHQHIIDGSTP 179

Query: 168 -------EGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYD 220
                  E             + +           R+++++  LPA+A+VKQ RVPNAYD
Sbjct: 180 AAAAARPESGGSSGSGTTSHTTETVQQQATAAAATRRSNIQRTLPAYAKVKQARVPNAYD 239

Query: 221 KTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
           KTALKLE+GDIIKVTKTNINGQWEGEL+GK GHFPFTHVEF+
Sbjct: 240 KTALKLEVGDIIKVTKTNINGQWEGELHGKVGHFPFTHVEFV 281

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195450666|ref|XP_002072580.1| GK13611 [Drosophila willistoni] gi|194168665|gb|EDW83566.1| GK13611 [Drosophila willistoni]

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 159/260 (61%), Positives = 203/260 (78%), Gaps = 8/260 (3%)

Query: 4   TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
           TFD  DR+SWYFG M+RQ+A  +L++E++ G FLVRDSN+I+G+YVLCV+E+ KVS+YII
Sbjct: 3   TFDVSDRSSWYFGSMSRQDATEVLMNERERGVFLVRDSNSIVGDYVLCVREDTKVSNYII 62

Query: 64  NKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFDGND 123
           NK+   + Q  Y+IGD++F +LP LL FY +HYLDT+PL +PA K +EKVI K+DF G+D
Sbjct: 63  NKVQQ-QDQIVYRIGDQSFENLPRLLTFYTLHYLDTTPLRRPAQKKVEKVIGKFDFVGSD 121

Query: 124 PDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSS 183
            DDLPF++ ++L V+ KDE+ WWTA+N SG+VG IPVPYVQ+Y + +      N  +   
Sbjct: 122 QDDLPFQRGEVLTVIRKDEDQWWTARNSSGQVGQIPVPYVQRYEDTIEEDGFDNGPM--- 178

Query: 184 SHHVPQQQTTP-VRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQ 242
              VP   TT  +++T L  KLPA+ARVKQ RVPNAYDKTALKLEIGDIIKVTKTNINGQ
Sbjct: 179 ---VPSSSTTSTLKRTDLNRKLPAYARVKQSRVPNAYDKTALKLEIGDIIKVTKTNINGQ 235

Query: 243 WEGELNGKTGHFPFTHVEFI 262
           WEGEL G+ GHFPFTHVEF+
Sbjct: 236 WEGELKGRKGHFPFTHVEFV 255

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	563
FB|FBgn0024811	271	Crk "Crk" [Drosophila melanoga	0.452	0.940	0.611	6.9e-86
UNIPROTKB|P87378	296	crk "Adapter molecule crk" [Xe	0.285	0.543	0.502	5.3e-69
ZFIN|ZDB-GENE-040801-148	311	crk "v-crk sarcoma virus CT10	0.266	0.482	0.511	2.9e-68
UNIPROTKB|E1BQ32	304	CRK "Uncharacterized protein"	0.269	0.5	0.5	4.2e-63
UNIPROTKB|E2QWD3	385	CRK "Uncharacterized protein"	0.269	0.394	0.5	4.2e-63
UNIPROTKB|P46108	304	CRK "Adapter molecule crk" [Ho	0.269	0.5	0.5	4.2e-63
RGD|2405	304	Crk "v-crk sarcoma virus CT10	0.269	0.5	0.5	4.2e-63
MGI|MGI:88508	304	Crk "v-crk sarcoma virus CT10	0.269	0.5	0.5	5.4e-63
UNIPROTKB|F1P241	280	CRKL "Uncharacterized protein"	0.296	0.596	0.483	2e-59
UNIPROTKB|G3N016	308	G3N016 "Uncharacterized protei	0.305	0.558	0.476	9.9e-54

FB|FBgn0024811 Crk "Crk" [Drosophila melanogaster (taxid:7227)]

 Score = 859 (307.4 bits), Expect = 6.9e-86, P = 6.9e-86
 Identities = 159/260 (61%), Positives = 207/260 (79%)

Query:     4 TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
             TFD  DRNSWYFG M+RQ+A  +L++E++ G FLVRDSN+I G+YVLCV+E+ KVS+YII
Sbjct:     3 TFDVSDRNSWYFGPMSRQDATEVLMNERERGVFLVRDSNSIAGDYVLCVREDTKVSNYII 62

Query:    64 NKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFDGND 123
             NK+   + Q  Y+IGD++F +LP LL FY +HYLDT+PL +PA + +EKVI K+DF G+D
Sbjct:    63 NKVQQ-QDQIVYRIGDQSFDNLPKLLTFYTLHYLDTTPLKRPACRRVEKVIGKFDFVGSD 121

Query:   124 PDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSL-RNLHLDS 182
              DDLPF++ ++L +V KDE+ WWTA+N SG++G IPVPY+Q+Y + M   ++ +N    S
Sbjct:   122 QDDLPFQRGEVLTIVRKDEDQWWTARNSSGKIGQIPVPYIQQYDDYMDEDAIDKNEPSIS 181

Query:   183 SSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQ 242
              S +V +   + +++T L  KLPA+ARVKQ RVPNAYDKTALKLEIGDIIKVTKTNINGQ
Sbjct:   182 GSSNVFE---STLKRTDLNRKLPAYARVKQSRVPNAYDKTALKLEIGDIIKVTKTNINGQ 238

Query:   243 WEGELNGKTGHFPFTHVEFI 262
             WEGELNGK GHFPFTHVEF+
Sbjct:   239 WEGELNGKNGHFPFTHVEFV 258

GO:0005070 "SH3/SH2 adaptor activity" evidence=ISS;IDA;NAS

GO:0007165 "signal transduction" evidence=NAS

GO:0007520 "myoblast fusion" evidence=TAS

GO:0046529 "imaginal disc fusion, thorax closure" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0046330 "positive regulation of JNK cascade" evidence=IDA

GO:0007298 "border follicle cell migration" evidence=IMP

UNIPROTKB|P87378 crk "Adapter molecule crk" [Xenopus laevis (taxid:8355)]

 Score = 403 (146.9 bits), Expect = 5.3e-69, Sum P(2) = 5.3e-69
 Identities = 85/169 (50%), Positives = 103/169 (60%)

Query:   110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY--- 166
             +E + A +DF GND +DLPFKK DIL +  K EE WW A++  G  G IPVPYV+KY   
Sbjct:   127 VEYLRALFDFIGNDDEDLPFKKGDILRIREKPEEQWWNAEDSDGRRGMIPVPYVEKYRPP 186

Query:   167 -SEGMSIL--SLRNLHLDSSSHHVPQQQTTPVRKTHLE--VKLPAFARVKQVRVPNAYDK 221
              S G +++  +  N H        P     P   T L      P FARV Q RVPNAYDK
Sbjct:   187 SSPGSALIGGNQENSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIFARVIQKRVPNAYDK 246

Query:   222 TALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETMPF 270
             TAL LE+GD++KVTK N++GQWEGE NGK GHFPFTHV  +  N    F
Sbjct:   247 TALALEVGDLVKVTKINVSGQWEGECNGKYGHFPFTHVRLLEQNPEEDF 295

GO:0032319 "regulation of Rho GTPase activity" evidence=ISS

GO:0032956 "regulation of actin cytoskeleton organization" evidence=ISS

GO:0048013 "ephrin receptor signaling pathway" evidence=ISS

ZFIN|ZDB-GENE-040801-148 crk "v-crk sarcoma virus CT10 oncogene homolog (avian)" [Danio rerio (taxid:7955)]

 Score = 407 (148.3 bits), Expect = 2.9e-68, Sum P(2) = 2.9e-68
 Identities = 86/168 (51%), Positives = 104/168 (61%)

Query:   111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY---- 166
             E V A +DF GND +DLPF+K D+L V+ K EE WW AQN  G VG IPVPYV+KY    
Sbjct:   136 EYVRALFDFPGNDDEDLPFRKGDVLRVLEKPEEQWWNAQNSEGRVGMIPVPYVEKYRPAS 195

Query:   167 ----SEGMSILSLRNLHLDSSSHHV--------PQQQTTPVRKTHLEVKLPAFARVKQVR 214
                 + G+S+ S    H +S  H          P Q   P    +L+   P +AR  Q R
Sbjct:   196 PTSGAPGVSV-SGSGAHGNSDGHSTQSPPLLGEPGQYAQPTSLPNLQ-NGPVYARAIQKR 253

Query:   215 VPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
             VPNAYDKTAL LE+GD++KVTK N+NGQWEGE  GK GHFPFTHV  +
Sbjct:   254 VPNAYDKTALALEVGDMVKVTKINVNGQWEGECKGKHGHFPFTHVRLL 301

GO:0005575 "cellular_component" evidence=ND

GO:0007520 "myoblast fusion" evidence=IMP

UNIPROTKB|E1BQ32 CRK "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 393 (143.4 bits), Expect = 4.2e-63, Sum P(2) = 4.2e-63
 Identities = 80/160 (50%), Positives = 101/160 (63%)

Query:   111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM 170
             E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ G IPVPYV+KY    
Sbjct:   135 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPAS 194

Query:   171 SILSLRNLHLDSSSHHVPQ--QQTTPVRKTHLEVKLP------AFARVKQVRVPNAYDKT 222
             + +S         SH  P    +  P  +  +   LP       +ARV Q RVPNAYDKT
Sbjct:   195 ASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYARVIQKRVPNAYDKT 254

Query:   223 ALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
             AL LE+G+++KVTK N++GQWEGE NGK GHFPFTHV  +
Sbjct:   255 ALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLL 294

GO:0048013 "ephrin receptor signaling pathway" evidence=IEA

GO:0046875 "ephrin receptor binding" evidence=IEA

GO:0045309 "protein phosphorylated amino acid binding" evidence=IEA

GO:0042169 "SH2 domain binding" evidence=IEA

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IEA

GO:0032319 "regulation of Rho GTPase activity" evidence=IEA

GO:0005070 "SH3/SH2 adaptor activity" evidence=IEA

UNIPROTKB|E2QWD3 CRK "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 393 (143.4 bits), Expect = 4.2e-63, Sum P(2) = 4.2e-63
 Identities = 80/160 (50%), Positives = 101/160 (63%)

Query:   111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM 170
             E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ G IPVPYV+KY    
Sbjct:   216 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPAS 275

Query:   171 SILSLRNLHLDSSSHHVPQ--QQTTPVRKTHLEVKLP------AFARVKQVRVPNAYDKT 222
             + +S         SH  P    +  P  +  +   LP       +ARV Q RVPNAYDKT
Sbjct:   276 ASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYARVIQKRVPNAYDKT 335

Query:   223 ALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
             AL LE+G+++KVTK N++GQWEGE NGK GHFPFTHV  +
Sbjct:   336 ALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLL 375

GO:0048013 "ephrin receptor signaling pathway" evidence=IEA

GO:0046875 "ephrin receptor binding" evidence=IEA

GO:0045309 "protein phosphorylated amino acid binding" evidence=IEA

GO:0042169 "SH2 domain binding" evidence=IEA

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IEA

GO:0032319 "regulation of Rho GTPase activity" evidence=IEA

GO:0005070 "SH3/SH2 adaptor activity" evidence=IEA

UNIPROTKB|P46108 CRK "Adapter molecule crk" [Homo sapiens (taxid:9606)]

 Score = 393 (143.4 bits), Expect = 4.2e-63, Sum P(2) = 4.2e-63
 Identities = 80/160 (50%), Positives = 101/160 (63%)

Query:   111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM 170
             E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ G IPVPYV+KY    
Sbjct:   135 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPAS 194

Query:   171 SILSLRNLHLDSSSHHVPQ--QQTTPVRKTHLEVKLP------AFARVKQVRVPNAYDKT 222
             + +S         SH  P    +  P  +  +   LP       +ARV Q RVPNAYDKT
Sbjct:   195 ASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYARVIQKRVPNAYDKT 254

Query:   223 ALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
             AL LE+G+++KVTK N++GQWEGE NGK GHFPFTHV  +
Sbjct:   255 ALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLL 294

GO:0005070 "SH3/SH2 adaptor activity" evidence=IEA

GO:0035020 "regulation of Rac protein signal transduction" evidence=IEA

GO:0045309 "protein phosphorylated amino acid binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0042169 "SH2 domain binding" evidence=IPI

GO:0046875 "ephrin receptor binding" evidence=IPI

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IDA

GO:0032319 "regulation of Rho GTPase activity" evidence=IDA

GO:0048013 "ephrin receptor signaling pathway" evidence=IDA

GO:0005737 "cytoplasm" evidence=IC

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=TAS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=TAS

GO:0000186 "activation of MAPKK activity" evidence=TAS

GO:0005768 "endosome" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

GO:0030168 "platelet activation" evidence=TAS

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=TAS

RGD|2405 Crk "v-crk sarcoma virus CT10 oncogene homolog (avian)" [Rattus norvegicus (taxid:10116)]

 Score = 393 (143.4 bits), Expect = 4.2e-63, Sum P(2) = 4.2e-63
 Identities = 80/160 (50%), Positives = 101/160 (63%)

Query:   111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM 170
             E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ G IPVPYV+KY    
Sbjct:   135 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPAS 194

Query:   171 SILSLRNLHLDSSSHHVPQ--QQTTPVRKTHLEVKLP------AFARVKQVRVPNAYDKT 222
             + +S         SH  P    +  P  +  +   LP       +ARV Q RVPNAYDKT
Sbjct:   195 ASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYARVIQKRVPNAYDKT 254

Query:   223 ALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
             AL LE+G+++KVTK N++GQWEGE NGK GHFPFTHV  +
Sbjct:   255 ALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLL 294

GO:0005070 "SH3/SH2 adaptor activity" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=TAS

GO:0005886 "plasma membrane" evidence=IEA

GO:0007257 "activation of JUN kinase activity" evidence=TAS

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0030674 "protein binding, bridging" evidence=IMP

GO:0032319 "regulation of Rho GTPase activity" evidence=ISO;ISS

GO:0032956 "regulation of actin cytoskeleton organization" evidence=ISO;ISS

GO:0035020 "regulation of Rac protein signal transduction" evidence=IMP

GO:0042169 "SH2 domain binding" evidence=IEA;ISO

GO:0045309 "protein phosphorylated amino acid binding" evidence=IEA;ISO

GO:0046875 "ephrin receptor binding" evidence=IEA;ISO

GO:0048013 "ephrin receptor signaling pathway" evidence=ISO;ISS

GO:0051270 "regulation of cellular component movement" evidence=TAS

MGI|MGI:88508 Crk "v-crk sarcoma virus CT10 oncogene homolog (avian)" [Mus musculus (taxid:10090)]

 Score = 393 (143.4 bits), Expect = 5.4e-63, Sum P(2) = 5.4e-63
 Identities = 80/160 (50%), Positives = 101/160 (63%)

Query:   111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM 170
             E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ G IPVPYV+KY    
Sbjct:   135 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPAS 194

Query:   171 SILSLRNLHLDSSSHHVPQ--QQTTPVRKTHLEVKLP------AFARVKQVRVPNAYDKT 222
             + +S         SH  P    +  P  +  +   LP       +ARV Q RVPNAYDKT
Sbjct:   195 ASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYARVIQKRVPNAYDKT 254

Query:   223 ALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
             AL LE+G+++KVTK N++GQWEGE NGK GHFPFTHV  +
Sbjct:   255 ALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLL 294

GO:0005070 "SH3/SH2 adaptor activity" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0030674 "protein binding, bridging" evidence=ISO

GO:0032319 "regulation of Rho GTPase activity" evidence=ISO

GO:0032956 "regulation of actin cytoskeleton organization" evidence=ISO

GO:0035020 "regulation of Rac protein signal transduction" evidence=ISO

GO:0042169 "SH2 domain binding" evidence=ISO

GO:0045309 "protein phosphorylated amino acid binding" evidence=IDA

GO:0046875 "ephrin receptor binding" evidence=ISO;IPI

GO:0048013 "ephrin receptor signaling pathway" evidence=ISO

UNIPROTKB|F1P241 CRKL "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 395 (144.1 bits), Expect = 2.0e-59, Sum P(2) = 2.0e-59
 Identities = 89/184 (48%), Positives = 115/184 (62%)

Query:    99 TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSI 158
             ++P +  A + +E V   YDF GND +DLPFKK +IL++V K EE WW+A+N  G +G I
Sbjct:    92 SAPAMSAAEENVEYVRTLYDFPGNDAEDLPFKKGEILVIVEKPEEQWWSARNKDGRIGMI 151

Query:   159 PVPYVQKY-SEGMSILSLRNLH---LDSSSHHVPQQQTT-P---VRKTHLEV--KLPA-- 206
             PVPYV+K     +     RN +   +   +H   Q QTT P   V  T   V   LP+  
Sbjct:   152 PVPYVEKLVRSSIGKHGNRNSNSYGIPEPAHAYAQPQTTSPLPTVSSTPGAVINPLPSTQ 211

Query:   207 ----FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE-F 261
                 +A+  Q RVP AYDKTAL LE+GDI+KVT+ NINGQWEGE+NG+ G FPFTHV+ F
Sbjct:   212 NGPVYAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIF 271

Query:   262 IPTN 265
              P N
Sbjct:   272 DPQN 275

GO:0001568 "blood vessel development" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0009887 "organ morphogenesis" evidence=IEA

GO:0009952 "anterior/posterior pattern specification" evidence=IEA

GO:0048538 "thymus development" evidence=IEA

GO:0060017 "parathyroid gland development" evidence=IEA

UNIPROTKB|G3N016 G3N016 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 397 (144.8 bits), Expect = 9.9e-54, Sum P(2) = 9.9e-54
 Identities = 90/189 (47%), Positives = 112/189 (59%)

Query:   374 TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSI 433
             ++P +  A +T+E V   YDF GND +DLPFKK +IL++V K EE WW+A+N  G VG I
Sbjct:   120 SAPSLPAAEETLEYVRTLYDFPGNDAEDLPFKKGEILVIVEKPEEQWWSARNKDGRVGMI 179

Query:   434 PVPYVQKYSEGMSILSLRNLHLDS-----SSHHVPQQQTT-P----------VRKTHLEV 477
             PVPYV+K     +     N +  S      +H   Q QTT P          V       
Sbjct:   180 PVPYVEKLVRASAQGKPGNRNSSSYGVPEPAHAYAQPQTTAPPPAAGAPGAAVSPLPSTQ 239

Query:   478 KLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 537
               P FA+  Q RVP AYDKTAL LE+GDI+KVT+ NINGQWEGE+NG+ G FPFTHV+ I
Sbjct:   240 NGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKII 299

Query:   538 -PTNETSVE 545
              P N    E
Sbjct:   300 DPQNPDESE 308

GO:0060017 "parathyroid gland development" evidence=IEA

GO:0048538 "thymus development" evidence=IEA

GO:0009952 "anterior/posterior pattern specification" evidence=IEA

GO:0009887 "organ morphogenesis" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0001568 "blood vessel development" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9XYM0	CRK_DROME	No assigned EC number	0.6015	0.4635	0.9630	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	563
cd09926	106	cd09926, SH2_CRK_like, Src homology 2 domain found	7e-48
cd09926	106	cd09926, SH2_CRK_like, Src homology 2 domain found	7e-48
cd11759	57	cd11759, SH3_CRK_C, C-terminal Src Homology 3 doma	2e-33
cd11759	57	cd11759, SH3_CRK_C, C-terminal Src Homology 3 doma	2e-33
cd11758	55	cd11758, SH3_CRK_N, N-terminal Src Homology 3 doma	1e-27
cd11758	55	cd11758, SH3_CRK_N, N-terminal Src Homology 3 doma	1e-27
pfam00017	77	pfam00017, SH2, SH2 domain	9e-21
pfam00017	77	pfam00017, SH2, SH2 domain	9e-21
smart00252	84	smart00252, SH2, Src homology 2 domains	6e-20
smart00252	84	smart00252, SH2, Src homology 2 domains	6e-20
cd00173	79	cd00173, SH2, Src homology 2 (SH2) domain	7e-20
cd00173	79	cd00173, SH2, Src homology 2 (SH2) domain	7e-20
smart00326	56	smart00326, SH3, Src homology 3 domains	6e-19
smart00326	56	smart00326, SH3, Src homology 3 domains	6e-19
pfam00018	47	pfam00018, SH3_1, SH3 domain	2e-16
pfam00018	47	pfam00018, SH3_1, SH3 domain	2e-16
cd00174	51	cd00174, SH3, Src Homology 3 domain superfamily	5e-16
cd00174	51	cd00174, SH3, Src Homology 3 domain superfamily	5e-16
cd11769	57	cd11769, SH3_CSK, Src Homology 3 domain of C-termi	8e-16
cd11769	57	cd11769, SH3_CSK, Src Homology 3 domain of C-termi	8e-16
cd11768	54	cd11768, SH3_Tec_like, Src Homology 3 domain of Te	2e-15
cd11768	54	cd11768, SH3_Tec_like, Src Homology 3 domain of Te	2e-15
cd10337	136	cd10337, SH2_BCAR3, Src homology 2 (SH2) domain in	5e-14
cd10337	136	cd10337, SH2_BCAR3, Src homology 2 (SH2) domain in	5e-14
cd10360	79	cd10360, SH2_Srm, Src homology 2 (SH2) domain foun	3e-13
cd10360	79	cd10360, SH2_Srm, Src homology 2 (SH2) domain foun	3e-13
cd10347	81	cd10347, SH2_Nterm_shark_like, N-terminal Src homo	4e-13
cd10347	81	cd10347, SH2_Nterm_shark_like, N-terminal Src homo	4e-13
cd09933	101	cd09933, SH2_Src_family, Src homology 2 (SH2) doma	7e-13
cd09933	101	cd09933, SH2_Src_family, Src homology 2 (SH2) doma	7e-13
pfam07653	53	pfam07653, SH3_2, Variant SH3 domain	2e-12
pfam07653	53	pfam07653, SH3_2, Variant SH3 domain	2e-12
cd09931	99	cd09931, SH2_C-SH2_SHP_like, C-terminal Src homolo	4e-12
cd09931	99	cd09931, SH2_C-SH2_SHP_like, C-terminal Src homolo	4e-12
cd09941	95	cd09941, SH2_Grb2_like, Src homology 2 domain foun	5e-12
cd09941	95	cd09941, SH2_Grb2_like, Src homology 2 domain foun	5e-12
cd11770	54	cd11770, SH3_Nephrocystin, Src Homology 3 domain o	6e-12
cd11770	54	cd11770, SH3_Nephrocystin, Src Homology 3 domain o	6e-12
cd09943	93	cd09943, SH2_Nck_family, Src homology 2 (SH2) doma	8e-12
cd09943	93	cd09943, SH2_Nck_family, Src homology 2 (SH2) doma	8e-12
cd11767	56	cd11767, SH3_Nck_3, Third Src Homology 3 domain of	1e-11
cd11767	56	cd11767, SH3_Nck_3, Third Src Homology 3 domain of	1e-11
cd09937	98	cd09937, SH2_csk_like, Src homology 2 (SH2) domain	2e-11
cd09937	98	cd09937, SH2_csk_like, Src homology 2 (SH2) domain	2e-11
cd10354	77	cd10354, SH2_Cterm_RasGAP, C-terminal Src homology	8e-11
cd10354	77	cd10354, SH2_Cterm_RasGAP, C-terminal Src homology	8e-11
cd10370	96	cd10370, SH2_Src_Src42, Src homology 2 (SH2) domai	1e-10
cd10370	96	cd10370, SH2_Src_Src42, Src homology 2 (SH2) domai	1e-10
cd10355	92	cd10355, SH2_DAPP1_BAM32_like, Src homology 2 doma	1e-10
cd10355	92	cd10355, SH2_DAPP1_BAM32_like, Src homology 2 doma	1e-10
cd10365	101	cd10365, SH2_Src_Src, Src homology 2 (SH2) domain	4e-10
cd10365	101	cd10365, SH2_Src_Src, Src homology 2 (SH2) domain	4e-10
cd09944	108	cd09944, SH2_Grb7_family, Src homology 2 (SH2) dom	5e-10
cd09944	108	cd09944, SH2_Grb7_family, Src homology 2 (SH2) dom	5e-10
cd09935	94	cd09935, SH2_ABL, Src homology 2 (SH2) domain foun	6e-10
cd09935	94	cd09935, SH2_ABL, Src homology 2 (SH2) domain foun	6e-10
cd11849	53	cd11849, SH3_SPIN90, Src homology 3 domain of SH3	6e-10
cd11849	53	cd11849, SH3_SPIN90, Src homology 3 domain of SH3	6e-10
cd10361	90	cd10361, SH2_Fps_family, Src homology 2 (SH2) doma	7e-10
cd10361	90	cd10361, SH2_Fps_family, Src homology 2 (SH2) doma	7e-10
cd11805	53	cd11805, SH3_GRB2_like_C, C-terminal Src homology	7e-10
cd11805	53	cd11805, SH3_GRB2_like_C, C-terminal Src homology	7e-10
cd10343	103	cd10343, SH2_SHIP, Src homology 2 (SH2) domain fou	9e-10
cd10343	103	cd10343, SH2_SHIP, Src homology 2 (SH2) domain fou	9e-10
cd11840	53	cd11840, SH3_Intersectin_5, Fifth Src homology 3 d	2e-09
cd11840	53	cd11840, SH3_Intersectin_5, Fifth Src homology 3 d	2e-09
cd11845	52	cd11845, SH3_Src_like, Src homology 3 domain of Sr	2e-09
cd11845	52	cd11845, SH3_Src_like, Src homology 3 domain of Sr	2e-09
cd10341	99	cd10341, SH2_N-SH2_PLC_gamma_like, N-terminal Src	3e-09
cd10341	99	cd10341, SH2_N-SH2_PLC_gamma_like, N-terminal Src	3e-09
cd10352	91	cd10352, SH2_a2chimerin_b2chimerin, Src homology 2	4e-09
cd10352	91	cd10352, SH2_a2chimerin_b2chimerin, Src homology 2	4e-09
cd11905	56	cd11905, SH3_Tec, Src Homology 3 domain of Tec (Ty	1e-08
cd11905	56	cd11905, SH3_Tec, Src Homology 3 domain of Tec (Ty	1e-08
cd11842	55	cd11842, SH3_Ysc84p_like, Src homology 3 domain of	1e-08
cd11842	55	cd11842, SH3_Ysc84p_like, Src homology 3 domain of	1e-08
cd09932	104	cd09932, SH2_C-SH2_PLC_gamma_like, C-terminal Src	2e-08
cd09932	104	cd09932, SH2_C-SH2_PLC_gamma_like, C-terminal Src	2e-08
cd11782	53	cd11782, SH3_Sorbs_2, Second Src Homology 3 domain	2e-08
cd11782	53	cd11782, SH3_Sorbs_2, Second Src Homology 3 domain	2e-08
cd11951	53	cd11951, SH3_GRAP_C, C-terminal Src homology 3 dom	2e-08
cd11951	53	cd11951, SH3_GRAP_C, C-terminal Src homology 3 dom	2e-08
cd12046	53	cd12046, SH3_p67phox_C, C-terminal (or second) Src	2e-08
cd12046	53	cd12046, SH3_p67phox_C, C-terminal (or second) Src	2e-08
cd11858	55	cd11858, SH3_Myosin-I_fungi, Src homology 3 domain	3e-08
cd11858	55	cd11858, SH3_Myosin-I_fungi, Src homology 3 domain	3e-08
cd10369	96	cd10369, SH2_Src_Frk, Src homology 2 (SH2) domain	4e-08
cd10369	96	cd10369, SH2_Src_Frk, Src homology 2 (SH2) domain	4e-08
cd09940	102	cd09940, SH2_Vav_family, Src homology 2 (SH2) doma	4e-08
cd09940	102	cd09940, SH2_Vav_family, Src homology 2 (SH2) doma	4e-08
cd11978	56	cd11978, SH3_VAV3_2, C-terminal (or second) Src ho	4e-08
cd11978	56	cd11978, SH3_VAV3_2, C-terminal (or second) Src ho	4e-08
cd11827	53	cd11827, SH3_MyoIe_If_like, Src homology 3 domain	5e-08
cd11827	53	cd11827, SH3_MyoIe_If_like, Src homology 3 domain	5e-08
cd09925	104	cd09925, SH2_SHC, Src homology 2 (SH2) domain foun	5e-08
cd09925	104	cd09925, SH2_SHC, Src homology 2 (SH2) domain foun	5e-08
cd11968	56	cd11968, SH3_SASH3, Src homology 3 domain of Sam A	9e-08
cd11968	56	cd11968, SH3_SASH3, Src homology 3 domain of Sam A	9e-08
cd10408	97	cd10408, SH2_Nck1, Src homology 2 (SH2) domain fou	1e-07
cd10408	97	cd10408, SH2_Nck1, Src homology 2 (SH2) domain fou	1e-07
cd09938	104	cd09938, SH2_N-SH2_Zap70_Syk_like, N-terminal Src	1e-07
cd09938	104	cd09938, SH2_N-SH2_Zap70_Syk_like, N-terminal Src	1e-07
cd09929	121	cd09929, SH2_BLNK_SLP-76, Src homology 2 (SH2) dom	1e-07
cd09929	121	cd09929, SH2_BLNK_SLP-76, Src homology 2 (SH2) dom	1e-07
cd11813	53	cd11813, SH3_SGSM3, Src Homology 3 domain of Small	1e-07
cd11813	53	cd11813, SH3_SGSM3, Src Homology 3 domain of Small	1e-07
cd11908	56	cd11908, SH3_ITK, Src Homology 3 domain of Interle	1e-07
cd11908	56	cd11908, SH3_ITK, Src Homology 3 domain of Interle	1e-07
cd11763	55	cd11763, SH3_SNX9_like, Src Homology 3 domain of S	2e-07
cd11763	55	cd11763, SH3_SNX9_like, Src Homology 3 domain of S	2e-07
cd09930	104	cd09930, SH2_cSH2_p85_like, C-terminal Src homolog	2e-07
cd09930	104	cd09930, SH2_cSH2_p85_like, C-terminal Src homolog	2e-07
cd10417	102	cd10417, SH2_SH2D7, Src homology 2 domain found in	2e-07
cd10417	102	cd10417, SH2_SH2D7, Src homology 2 domain found in	2e-07
cd11765	51	cd11765, SH3_Nck_1, First Src Homology 3 domain of	2e-07
cd11765	51	cd11765, SH3_Nck_1, First Src Homology 3 domain of	2e-07
cd11804	52	cd11804, SH3_GRB2_like_N, N-terminal Src homology	2e-07
cd11804	52	cd11804, SH3_GRB2_like_N, N-terminal Src homology	2e-07
cd11830	54	cd11830, SH3_VAV_2, C-terminal (or second) Src hom	2e-07
cd11830	54	cd11830, SH3_VAV_2, C-terminal (or second) Src hom	2e-07
cd11826	52	cd11826, SH3_Abi, Src homology 3 domain of Abl Int	2e-07
cd11826	52	cd11826, SH3_Abi, Src homology 3 domain of Abl Int	2e-07
cd10367	101	cd10367, SH2_Src_Fgr, Src homology 2 (SH2) domain	2e-07
cd10367	101	cd10367, SH2_Src_Fgr, Src homology 2 (SH2) domain	2e-07
cd11823	53	cd11823, SH3_Nostrin, Src homology 3 domain of Nit	2e-07
cd11823	53	cd11823, SH3_Nostrin, Src homology 3 domain of Nit	2e-07
cd11906	55	cd11906, SH3_BTK, Src Homology 3 domain of Bruton'	2e-07
cd11906	55	cd11906, SH3_BTK, Src Homology 3 domain of Bruton'	2e-07
cd11862	61	cd11862, SH3_MPP, Src Homology 3 domain of Membran	3e-07
cd11862	61	cd11862, SH3_MPP, Src Homology 3 domain of Membran	3e-07
cd11786	53	cd11786, SH3_SH3RF_1, First Src Homology 3 domain	3e-07
cd11786	53	cd11786, SH3_SH3RF_1, First Src Homology 3 domain	3e-07
cd09923	81	cd09923, SH2_SOCS_family, Src homology 2 (SH2) dom	4e-07
cd09923	81	cd09923, SH2_SOCS_family, Src homology 2 (SH2) dom	4e-07
cd11995	54	cd11995, SH3_Intersectin1_5, Fifth Src homology 3	4e-07
cd11995	54	cd11995, SH3_Intersectin1_5, Fifth Src homology 3	4e-07
cd11855	55	cd11855, SH3_Sho1p, Src homology 3 domain of High	5e-07
cd11855	55	cd11855, SH3_Sho1p, Src homology 3 domain of High	5e-07
cd10366	101	cd10366, SH2_Src_Yes, Src homology 2 (SH2) domain	6e-07
cd10366	101	cd10366, SH2_Src_Yes, Src homology 2 (SH2) domain	6e-07
cd10348	86	cd10348, SH2_Cterm_shark_like, C-terminal Src homo	7e-07
cd10348	86	cd10348, SH2_Cterm_shark_like, C-terminal Src homo	7e-07
cd10353	103	cd10353, SH2_Nterm_RasGAP, N-terminal Src homology	7e-07
cd10353	103	cd10353, SH2_Nterm_RasGAP, N-terminal Src homology	7e-07
cd12009	54	cd12009, SH3_Blk, Src homology 3 domain of Blk Pro	8e-07
cd12009	54	cd12009, SH3_Blk, Src homology 3 domain of Blk Pro	8e-07
cd11824	53	cd11824, SH3_PSTPIP1, Src homology 3 domain of Pro	8e-07
cd11824	53	cd11824, SH3_PSTPIP1, Src homology 3 domain of Pro	8e-07
cd11822	52	cd11822, SH3_SASH_like, Src homology 3 domain of S	9e-07
cd11822	52	cd11822, SH3_SASH_like, Src homology 3 domain of S	9e-07
cd10340	99	cd10340, SH2_N-SH2_SHP_like, N-terminal Src homolo	9e-07
cd10340	99	cd10340, SH2_N-SH2_SHP_like, N-terminal Src homolo	9e-07
cd11883	55	cd11883, SH3_Sdc25, Src Homology 3 domain of Sdc25	1e-06
cd11883	55	cd11883, SH3_Sdc25, Src Homology 3 domain of Sdc25	1e-06
cd11996	54	cd11996, SH3_Intersectin2_5, Fifth Src homology 3	1e-06
cd11996	54	cd11996, SH3_Intersectin2_5, Fifth Src homology 3	1e-06
cd10401	99	cd10401, SH2_C-SH2_Syk_like, C-terminal Src homolo	1e-06
cd10401	99	cd10401, SH2_C-SH2_Syk_like, C-terminal Src homolo	1e-06
cd11812	52	cd11812, SH3_AHI-1, Src Homology 3 domain of Abels	1e-06
cd11812	52	cd11812, SH3_AHI-1, Src Homology 3 domain of Abels	1e-06
cd11907	55	cd11907, SH3_TXK, Src Homology 3 domain of TXK, al	2e-06
cd11907	55	cd11907, SH3_TXK, Src Homology 3 domain of TXK, al	2e-06
cd10409	98	cd10409, SH2_Nck2, Src homology 2 (SH2) domain fou	2e-06
cd10409	98	cd10409, SH2_Nck2, Src homology 2 (SH2) domain fou	2e-06
cd10349	77	cd10349, SH2_SH2D2A_SH2D7, Src homology 2 domain f	2e-06
cd10349	77	cd10349, SH2_SH2D2A_SH2D7, Src homology 2 domain f	2e-06
cd11772	53	cd11772, SH3_OSTF1, Src Homology 3 domain of metaz	2e-06
cd11772	53	cd11772, SH3_OSTF1, Src Homology 3 domain of metaz	2e-06
cd11775	57	cd11775, SH3_Sla1p_3, Third Src Homology 3 domain	2e-06
cd11775	57	cd11775, SH3_Sla1p_3, Third Src Homology 3 domain	2e-06
cd10405	103	cd10405, SH2_Vav1, Src homology 2 (SH2) domain fou	2e-06
cd10405	103	cd10405, SH2_Vav1, Src homology 2 (SH2) domain fou	2e-06
cd12007	58	cd12007, SH3_Yes, Src homology 3 domain of Yes Pro	2e-06
cd12007	58	cd12007, SH3_Yes, Src homology 3 domain of Yes Pro	2e-06
cd11976	54	cd11976, SH3_VAV1_2, C-terminal (or second) Src ho	2e-06
cd11976	54	cd11976, SH3_VAV1_2, C-terminal (or second) Src ho	2e-06
cd11877	53	cd11877, SH3_PIX, Src Homology 3 domain of Pak Int	2e-06
cd11877	53	cd11877, SH3_PIX, Src Homology 3 domain of Pak Int	2e-06
cd11823	53	cd11823, SH3_Nostrin, Src homology 3 domain of Nit	3e-06
cd11823	53	cd11823, SH3_Nostrin, Src homology 3 domain of Nit	3e-06
cd09934	104	cd09934, SH2_Tec_family, Src homology 2 (SH2) doma	3e-06
cd09934	104	cd09934, SH2_Tec_family, Src homology 2 (SH2) doma	3e-06
cd10414	108	cd10414, SH2_Grb14, Src homology 2 (SH2) domain fo	3e-06
cd10414	108	cd10414, SH2_Grb14, Src homology 2 (SH2) domain fo	3e-06
cd12081	62	cd12081, SH3_CASK, Src Homology 3 domain of Calciu	3e-06
cd12081	62	cd12081, SH3_CASK, Src Homology 3 domain of Calciu	3e-06
cd11843	53	cd11843, SH3_PACSIN, Src homology 3 domain of Prot	3e-06
cd11843	53	cd11843, SH3_PACSIN, Src homology 3 domain of Prot	3e-06
cd10364	101	cd10364, SH2_Src_Lyn, Src homology 2 (SH2) domain	3e-06
cd10364	101	cd10364, SH2_Src_Lyn, Src homology 2 (SH2) domain	3e-06
cd11877	53	cd11877, SH3_PIX, Src Homology 3 domain of Pak Int	4e-06
cd11877	53	cd11877, SH3_PIX, Src Homology 3 domain of Pak Int	4e-06
cd12142	55	cd12142, SH3_D21-like, Src Homology 3 domain of SH	4e-06
cd12142	55	cd12142, SH3_D21-like, Src Homology 3 domain of SH	4e-06
cd10413	108	cd10413, SH2_Grb7, Src homology 2 (SH2) domain fou	4e-06
cd10413	108	cd10413, SH2_Grb7, Src homology 2 (SH2) domain fou	4e-06
cd11967	57	cd11967, SH3_SASH1, Src homology 3 domain of SAM A	4e-06
cd11967	57	cd11967, SH3_SASH1, Src homology 3 domain of SAM A	4e-06
cd11771	60	cd11771, SH3_Pex13p_fungal, Src Homology 3 domain	4e-06
cd11771	60	cd11771, SH3_Pex13p_fungal, Src Homology 3 domain	4e-06
cd10418	101	cd10418, SH2_Src_Fyn_isoform_a_like, Src homology	4e-06
cd10418	101	cd10418, SH2_Src_Fyn_isoform_a_like, Src homology	4e-06
cd11928	54	cd11928, SH3_SH3RF3_1, First Src Homology 3 domain	4e-06
cd11928	54	cd11928, SH3_SH3RF3_1, First Src Homology 3 domain	4e-06
cd10358	100	cd10358, SH2_PTK6_Brk, Src homology 2 domain found	5e-06
cd10358	100	cd10358, SH2_PTK6_Brk, Src homology 2 domain found	5e-06
cd09945	98	cd09945, SH2_SHB_SHD_SHE_SHF_like, Src homology 2	5e-06
cd09945	98	cd09945, SH2_SHB_SHD_SHE_SHF_like, Src homology 2	5e-06
cd11838	52	cd11838, SH3_Intersectin_3, Third Src homology 3 d	5e-06
cd11838	52	cd11838, SH3_Intersectin_3, Third Src homology 3 d	5e-06
pfam07653	53	pfam07653, SH3_2, Variant SH3 domain	6e-06
pfam07653	53	pfam07653, SH3_2, Variant SH3 domain	6e-06
cd10363	104	cd10363, SH2_Src_HCK, Src homology 2 (SH2) domain	6e-06
cd10363	104	cd10363, SH2_Src_HCK, Src homology 2 (SH2) domain	6e-06
cd10368	101	cd10368, SH2_Src_Fyn, Src homology 2 (SH2) domain	6e-06
cd10368	101	cd10368, SH2_Src_Fyn, Src homology 2 (SH2) domain	6e-06
cd11956	55	cd11956, SH3_srGAP4, Src homology 3 domain of Slit	6e-06
cd11956	55	cd11956, SH3_srGAP4, Src homology 3 domain of Slit	6e-06
smart00326	56	smart00326, SH3, Src homology 3 domains	7e-06
smart00326	56	smart00326, SH3, Src homology 3 domains	7e-06
cd11819	54	cd11819, SH3_Cortactin_like, Src homology 3 domain	7e-06
cd11819	54	cd11819, SH3_Cortactin_like, Src homology 3 domain	7e-06
cd11949	53	cd11949, SH3_GRB2_C, C-terminal Src homology 3 dom	7e-06
cd11949	53	cd11949, SH3_GRB2_C, C-terminal Src homology 3 dom	7e-06
cd11841	54	cd11841, SH3_SH3YL1_like, Src homology 3 domain of	7e-06
cd11841	54	cd11841, SH3_SH3YL1_like, Src homology 3 domain of	7e-06
cd11998	56	cd11998, SH3_PACSIN1-2, Src homology 3 domain of P	8e-06
cd11998	56	cd11998, SH3_PACSIN1-2, Src homology 3 domain of P	8e-06
cd11873	53	cd11873, SH3_CD2AP-like_1, First Src Homology 3 do	9e-06
cd11873	53	cd11873, SH3_CD2AP-like_1, First Src Homology 3 do	9e-06
cd12055	53	cd12055, SH3_CIN85_2, Second Src Homology 3 domain	1e-05
cd12055	53	cd12055, SH3_CIN85_2, Second Src Homology 3 domain	1e-05
cd11946	56	cd11946, SH3_GRB2_N, N-terminal Src homology 3 dom	1e-05
cd11946	56	cd11946, SH3_GRB2_N, N-terminal Src homology 3 dom	1e-05
cd10419	101	cd10419, SH2_Src_Fyn_isoform_b_like, Src homology	1e-05
cd10419	101	cd10419, SH2_Src_Fyn_isoform_b_like, Src homology	1e-05
cd10397	106	cd10397, SH2_Tec_Btk, Src homology 2 (SH2) domain	1e-05
cd10397	106	cd10397, SH2_Tec_Btk, Src homology 2 (SH2) domain	1e-05
cd10407	103	cd10407, SH2_Vav3, Src homology 2 (SH2) domain fou	1e-05
cd10407	103	cd10407, SH2_Vav3, Src homology 2 (SH2) domain fou	1e-05
cd11997	56	cd11997, SH3_PACSIN3, Src homology 3 domain of Pro	1e-05
cd11997	56	cd11997, SH3_PACSIN3, Src homology 3 domain of Pro	1e-05
cd11874	53	cd11874, SH3_CD2AP-like_2, Second Src Homology 3 d	1e-05
cd11874	53	cd11874, SH3_CD2AP-like_2, Second Src Homology 3 d	1e-05
cd10344	104	cd10344, SH2_SLAP, Src homology 2 domain found in	1e-05
cd10344	104	cd10344, SH2_SLAP, Src homology 2 domain found in	1e-05
cd11807	57	cd11807, SH3_ASPP, Src homology 3 domain of Apopto	1e-05
cd11807	57	cd11807, SH3_ASPP, Src homology 3 domain of Apopto	1e-05
cd11955	53	cd11955, SH3_srGAP1-3, Src homology 3 domain of Sl	1e-05
cd11955	53	cd11955, SH3_srGAP1-3, Src homology 3 domain of Sl	1e-05
cd11803	55	cd11803, SH3_Endophilin_A, Src homology 3 domain o	2e-05
cd11803	55	cd11803, SH3_Endophilin_A, Src homology 3 domain o	2e-05
cd11764	54	cd11764, SH3_Eps8, Src Homology 3 domain of Epider	2e-05
cd11764	54	cd11764, SH3_Eps8, Src Homology 3 domain of Epider	2e-05
cd11911	55	cd11911, SH3_CIP4-like, Src Homology 3 domain of C	2e-05
cd11911	55	cd11911, SH3_CIP4-like, Src Homology 3 domain of C	2e-05
cd11866	53	cd11866, SH3_SKAP1-like, Src Homology 3 domain of	2e-05
cd11866	53	cd11866, SH3_SKAP1-like, Src Homology 3 domain of	2e-05
cd11826	52	cd11826, SH3_Abi, Src homology 3 domain of Abl Int	3e-05
cd11826	52	cd11826, SH3_Abi, Src homology 3 domain of Abl Int	3e-05
cd11876	58	cd11876, SH3_MLK, Src Homology 3 domain of Mixed L	3e-05
cd11876	58	cd11876, SH3_MLK, Src Homology 3 domain of Mixed L	3e-05
cd11879	56	cd11879, SH3_Bem1p_2, Second Src Homology 3 domain	3e-05
cd11879	56	cd11879, SH3_Bem1p_2, Second Src Homology 3 domain	3e-05
cd11821	53	cd11821, SH3_ASAP, Src homology 3 domain of ArfGAP	3e-05
cd11821	53	cd11821, SH3_ASAP, Src homology 3 domain of ArfGAP	3e-05
cd09942	110	cd09942, SH2_nSH2_p85_like, N-terminal Src homolog	3e-05
cd09942	110	cd09942, SH2_nSH2_p85_like, N-terminal Src homolog	3e-05
cd11806	53	cd11806, SH3_PRMT2, Src homology 3 domain of Prote	3e-05
cd11806	53	cd11806, SH3_PRMT2, Src homology 3 domain of Prote	3e-05
cd11839	58	cd11839, SH3_Intersectin_4, Fourth Src homology 3	3e-05
cd11839	58	cd11839, SH3_Intersectin_4, Fourth Src homology 3	3e-05
cd11809	53	cd11809, SH3_srGAP, Src homology 3 domain of Slit-	3e-05
cd11809	53	cd11809, SH3_srGAP, Src homology 3 domain of Slit-	3e-05
cd11787	53	cd11787, SH3_SH3RF_2, Second Src Homology 3 domain	3e-05
cd11787	53	cd11787, SH3_SH3RF_2, Second Src Homology 3 domain	3e-05
cd12004	56	cd12004, SH3_Lyn, Src homology 3 domain of Lyn Pro	3e-05
cd12004	56	cd12004, SH3_Lyn, Src homology 3 domain of Lyn Pro	3e-05
cd11820	54	cd11820, SH3_STAM, Src homology 3 domain of Signal	3e-05
cd11820	54	cd11820, SH3_STAM, Src homology 3 domain of Signal	3e-05
cd11927	54	cd11927, SH3_SH3RF1_1, First Src Homology 3 domain	3e-05
cd11927	54	cd11927, SH3_SH3RF1_1, First Src Homology 3 domain	3e-05
cd10400	103	cd10400, SH2_SAP1a, Src homology 2 (SH2) domain fo	3e-05
cd10400	103	cd10400, SH2_SAP1a, Src homology 2 (SH2) domain fo	3e-05
cd00174	51	cd00174, SH3, Src Homology 3 domain superfamily	4e-05
cd00174	51	cd00174, SH3, Src Homology 3 domain superfamily	4e-05
cd11827	53	cd11827, SH3_MyoIe_If_like, Src homology 3 domain	5e-05
cd11827	53	cd11827, SH3_MyoIe_If_like, Src homology 3 domain	5e-05
cd12008	56	cd12008, SH3_Src, Src homology 3 domain of Src Pro	5e-05
cd12008	56	cd12008, SH3_Src, Src homology 3 domain of Src Pro	5e-05
cd09927	116	cd09927, SH2_Tensin_like, Src homology 2 domain fo	5e-05
cd09927	116	cd09927, SH2_Tensin_like, Src homology 2 domain fo	5e-05
cd12006	56	cd12006, SH3_Fyn_Yrk, Src homology 3 domain of Fyn	5e-05
cd12006	56	cd12006, SH3_Fyn_Yrk, Src homology 3 domain of Fyn	5e-05
cd10391	98	cd10391, SH2_SHE, Src homology 2 domain found in S	5e-05
cd10391	98	cd10391, SH2_SHE, Src homology 2 domain found in S	5e-05
cd10415	108	cd10415, SH2_Grb10, Src homology 2 (SH2) domain fo	5e-05
cd10415	108	cd10415, SH2_Grb10, Src homology 2 (SH2) domain fo	5e-05
cd11773	57	cd11773, SH3_Sla1p_1, First Src Homology 3 domain	5e-05
cd11773	57	cd11773, SH3_Sla1p_1, First Src Homology 3 domain	5e-05
cd11805	53	cd11805, SH3_GRB2_like_C, C-terminal Src homology	6e-05
cd11805	53	cd11805, SH3_GRB2_like_C, C-terminal Src homology	6e-05
cd11873	53	cd11873, SH3_CD2AP-like_1, First Src Homology 3 do	6e-05
cd11873	53	cd11873, SH3_CD2AP-like_1, First Src Homology 3 do	6e-05
cd12060	58	cd12060, SH3_alphaPIX, Src Homology 3 domain of al	6e-05
cd12060	58	cd12060, SH3_alphaPIX, Src Homology 3 domain of al	6e-05
cd11999	56	cd11999, SH3_PACSIN_like, Src homology 3 domain of	6e-05
cd11999	56	cd11999, SH3_PACSIN_like, Src homology 3 domain of	6e-05
cd11829	52	cd11829, SH3_GAS7, Src homology 3 domain of Growth	6e-05
cd11829	52	cd11829, SH3_GAS7, Src homology 3 domain of Growth	6e-05
cd10342	103	cd10342, SH2_SAP1, Src homology 2 (SH2) domain fou	6e-05
cd10342	103	cd10342, SH2_SAP1, Src homology 2 (SH2) domain fou	6e-05
cd11766	53	cd11766, SH3_Nck_2, Second Src Homology 3 domain o	6e-05
cd11766	53	cd11766, SH3_Nck_2, Second Src Homology 3 domain o	6e-05
cd11870	53	cd11870, SH3_p67phox-like_C, C-terminal Src Homolo	7e-05
cd11870	53	cd11870, SH3_p67phox-like_C, C-terminal Src Homolo	7e-05
cd10402	105	cd10402, SH2_C-SH2_Zap70, C-terminal Src homology	7e-05
cd10402	105	cd10402, SH2_C-SH2_Zap70, C-terminal Src homology	7e-05
cd12059	58	cd12059, SH3_MLK1-3, Src Homology 3 domain of Mixe	7e-05
cd12059	58	cd12059, SH3_MLK1-3, Src Homology 3 domain of Mixe	7e-05
cd11875	55	cd11875, SH3_CD2AP-like_3, Third Src Homology 3 do	7e-05
cd11875	55	cd11875, SH3_CD2AP-like_3, Third Src Homology 3 do	7e-05
cd12061	54	cd12061, SH3_betaPIX, Src Homology 3 domain of bet	7e-05
cd12061	54	cd12061, SH3_betaPIX, Src Homology 3 domain of bet	7e-05
cd12005	54	cd12005, SH3_Lck, Src homology 3 domain of Lck Pro	7e-05
cd12005	54	cd12005, SH3_Lck, Src homology 3 domain of Lck Pro	7e-05
cd11920	55	cd11920, SH3_Sorbs2_1, First Src Homology 3 domain	7e-05
cd11920	55	cd11920, SH3_Sorbs2_1, First Src Homology 3 domain	7e-05
cd11808	53	cd11808, SH3_Alpha_Spectrin, Src homology 3 domain	7e-05
cd11808	53	cd11808, SH3_Alpha_Spectrin, Src homology 3 domain	7e-05
cd11861	61	cd11861, SH3_DLG-like, Src Homology 3 domain of Di	8e-05
cd11861	61	cd11861, SH3_DLG-like, Src Homology 3 domain of Di	8e-05
cd10396	108	cd10396, SH2_Tec_Itk, Src homology 2 (SH2) domain	8e-05
cd10396	108	cd10396, SH2_Tec_Itk, Src homology 2 (SH2) domain	8e-05
cd11948	54	cd11948, SH3_GRAP_N, N-terminal Src homology 3 dom	8e-05
cd11948	54	cd11948, SH3_GRAP_N, N-terminal Src homology 3 dom	8e-05
cd11947	52	cd11947, SH3_GRAP2_N, N-terminal Src homology 3 do	9e-05
cd11947	52	cd11947, SH3_GRAP2_N, N-terminal Src homology 3 do	9e-05
cd11781	53	cd11781, SH3_Sorbs_1, First Src Homology 3 domain	1e-04
cd11781	53	cd11781, SH3_Sorbs_1, First Src Homology 3 domain	1e-04
cd11960	54	cd11960, SH3_Abp1_eu, Src homology 3 domain of eum	1e-04
cd11960	54	cd11960, SH3_Abp1_eu, Src homology 3 domain of eum	1e-04
cd11950	53	cd11950, SH3_GRAP2_C, C-terminal Src homology 3 do	1e-04
cd11950	53	cd11950, SH3_GRAP2_C, C-terminal Src homology 3 do	1e-04
cd12072	57	cd12072, SH3_FNBP1L, Src Homology 3 domain of Form	1e-04
cd12072	57	cd12072, SH3_FNBP1L, Src Homology 3 domain of Form	1e-04
cd11963	57	cd11963, SH3_STAM2, Src homology 3 domain of Signa	1e-04
cd11963	57	cd11963, SH3_STAM2, Src homology 3 domain of Signa	1e-04
cd11991	52	cd11991, SH3_Intersectin1_3, Third Src homology 3	1e-04
cd11991	52	cd11991, SH3_Intersectin1_3, Third Src homology 3	1e-04
cd10410	97	cd10410, SH2_SH2B1, Src homology 2 (SH2) domain fo	1e-04
cd10410	97	cd10410, SH2_SH2B1, Src homology 2 (SH2) domain fo	1e-04
cd10388	101	cd10388, SH2_SOCS7, Src homology 2 (SH2) domain fo	1e-04
cd10388	101	cd10388, SH2_SOCS7, Src homology 2 (SH2) domain fo	1e-04
cd10351	103	cd10351, SH2_SH2D4B, Src homology 2 domain found i	1e-04
cd10351	103	cd10351, SH2_SH2D4B, Src homology 2 domain found i	1e-04
cd10387	100	cd10387, SH2_SOCS6, Src homology 2 (SH2) domain fo	1e-04
cd10387	100	cd10387, SH2_SOCS6, Src homology 2 (SH2) domain fo	1e-04
cd11830	54	cd11830, SH3_VAV_2, C-terminal (or second) Src hom	2e-04
cd11830	54	cd11830, SH3_VAV_2, C-terminal (or second) Src hom	2e-04
cd11976	54	cd11976, SH3_VAV1_2, C-terminal (or second) Src ho	2e-04
cd11976	54	cd11976, SH3_VAV1_2, C-terminal (or second) Src ho	2e-04
cd11803	55	cd11803, SH3_Endophilin_A, Src homology 3 domain o	2e-04
cd11803	55	cd11803, SH3_Endophilin_A, Src homology 3 domain o	2e-04
cd12062	62	cd12062, SH3_Caskin1, Src Homology 3 domain of CAS	2e-04
cd12062	62	cd12062, SH3_Caskin1, Src Homology 3 domain of CAS	2e-04
cd11864	58	cd11864, SH3_PEX13_eumet, Src Homology 3 domain of	2e-04
cd11864	58	cd11864, SH3_PEX13_eumet, Src Homology 3 domain of	2e-04
cd12035	62	cd12035, SH3_MPP1-like, Src Homology 3 domain of M	2e-04
cd12035	62	cd12035, SH3_MPP1-like, Src Homology 3 domain of M	2e-04
cd11761	57	cd11761, SH3_FCHSD_1, First Src Homology 3 domain	2e-04
cd11761	57	cd11761, SH3_FCHSD_1, First Src Homology 3 domain	2e-04
cd11919	55	cd11919, SH3_Sorbs1_1, First Src Homology 3 domain	2e-04
cd11919	55	cd11919, SH3_Sorbs1_1, First Src Homology 3 domain	2e-04
cd10398	106	cd10398, SH2_Tec_Txk, Src homology 2 (SH2) domain	2e-04
cd10398	106	cd10398, SH2_Tec_Txk, Src homology 2 (SH2) domain	2e-04
cd10362	101	cd10362, SH2_Src_Lck, Src homology 2 (SH2) domain	2e-04
cd10362	101	cd10362, SH2_Src_Lck, Src homology 2 (SH2) domain	2e-04
cd12061	54	cd12061, SH3_betaPIX, Src Homology 3 domain of bet	3e-04
cd12061	54	cd12061, SH3_betaPIX, Src Homology 3 domain of bet	3e-04
cd11959	53	cd11959, SH3_Cortactin, Src homology 3 domain of C	3e-04
cd11959	53	cd11959, SH3_Cortactin, Src homology 3 domain of C	3e-04
cd11899	58	cd11899, SH3_Nck2_1, First Src Homology 3 domain o	3e-04
cd11899	58	cd11899, SH3_Nck2_1, First Src Homology 3 domain o	3e-04
cd12054	55	cd12054, SH3_CD2AP_2, Second Src Homology 3 domain	3e-04
cd12054	55	cd12054, SH3_CD2AP_2, Second Src Homology 3 domain	3e-04
cd11904	57	cd11904, SH3_Nck1_3, Third Src Homology 3 domain o	3e-04
cd11904	57	cd11904, SH3_Nck1_3, Third Src Homology 3 domain o	3e-04
cd11972	61	cd11972, SH3_Abi2, Src homology 3 domain of Abl In	4e-04
cd11972	61	cd11972, SH3_Abi2, Src homology 3 domain of Abl In	4e-04
cd11817	50	cd11817, SH3_Eve1_4, Fourth Src homology 3 domain	4e-04
cd11817	50	cd11817, SH3_Eve1_4, Fourth Src homology 3 domain	4e-04
cd11953	57	cd11953, SH3_ASPP2, Src Homology 3 (SH3) domain of	4e-04
cd11953	57	cd11953, SH3_ASPP2, Src Homology 3 (SH3) domain of	4e-04
cd11897	55	cd11897, SH3_SNX18, Src Homology 3 domain of Sorti	4e-04
cd11897	55	cd11897, SH3_SNX18, Src Homology 3 domain of Sorti	4e-04
cd11816	51	cd11816, SH3_Eve1_3, Third Src homology 3 domain o	4e-04
cd11816	51	cd11816, SH3_Eve1_3, Third Src homology 3 domain o	4e-04
cd11977	58	cd11977, SH3_VAV2_2, C-terminal (or second) Src ho	4e-04
cd11977	58	cd11977, SH3_VAV2_2, C-terminal (or second) Src ho	4e-04
cd11924	56	cd11924, SH3_Vinexin_2, Second Src Homology 3 doma	5e-04
cd11924	56	cd11924, SH3_Vinexin_2, Second Src Homology 3 doma	5e-04
cd11797	50	cd11797, SH3_DNMBP_N4, Fourth N-terminal Src homol	5e-04
cd11797	50	cd11797, SH3_DNMBP_N4, Fourth N-terminal Src homol	5e-04
cd11837	53	cd11837, SH3_Intersectin_2, Second Src homology 3	5e-04
cd11837	53	cd11837, SH3_Intersectin_2, Second Src homology 3	5e-04
cd11966	56	cd11966, SH3_ASAP2, Src homology 3 domain of ArfGA	5e-04
cd11966	56	cd11966, SH3_ASAP2, Src homology 3 domain of ArfGA	5e-04
cd11828	53	cd11828, SH3_ARHGEF9_like, Src homology 3 domain o	5e-04
cd11828	53	cd11828, SH3_ARHGEF9_like, Src homology 3 domain o	5e-04
cd11880	61	cd11880, SH3_Caskin, Src Homology 3 domain of CASK	5e-04
cd11880	61	cd11880, SH3_Caskin, Src Homology 3 domain of CASK	5e-04
cd12045	53	cd12045, SH3_SKAP2, Src Homology 3 domain of Src K	6e-04
cd12045	53	cd12045, SH3_SKAP2, Src Homology 3 domain of Src K	6e-04
cd10718	88	cd10718, SH2_CIS, Src homology 2 (SH2) domain foun	6e-04
cd10718	88	cd10718, SH2_CIS, Src homology 2 (SH2) domain foun	6e-04
cd11930	55	cd11930, SH3_SH3RF1_2, Second Src Homology 3 domai	6e-04
cd11930	55	cd11930, SH3_SH3RF1_2, Second Src Homology 3 domai	6e-04
cd11900	59	cd11900, SH3_Nck1_1, First Src Homology 3 domain o	7e-04
cd11900	59	cd11900, SH3_Nck1_1, First Src Homology 3 domain o	7e-04
cd11978	56	cd11978, SH3_VAV3_2, C-terminal (or second) Src ho	8e-04
cd11978	56	cd11978, SH3_VAV3_2, C-terminal (or second) Src ho	8e-04
cd11793	55	cd11793, SH3_ephexin1_like, Src homology 3 domain	0.001
cd11793	55	cd11793, SH3_ephexin1_like, Src homology 3 domain	0.001
cd11964	55	cd11964, SH3_STAM1, Src homology 3 domain of Signa	0.001
cd11964	55	cd11964, SH3_STAM1, Src homology 3 domain of Signa	0.001
cd12052	53	cd12052, SH3_CIN85_1, First Src Homology 3 domain	0.001
cd12052	53	cd12052, SH3_CIN85_1, First Src Homology 3 domain	0.001
cd11789	55	cd11789, SH3_Nebulin_family_C, C-terminal Src Homo	0.001
cd11789	55	cd11789, SH3_Nebulin_family_C, C-terminal Src Homo	0.001
cd12073	55	cd12073, SH3_HS1, Src homology 3 domain of Hematop	0.001
cd12073	55	cd12073, SH3_HS1, Src homology 3 domain of Hematop	0.001
cd12063	62	cd12063, SH3_Caskin2, Src Homology 3 domain of CAS	0.001
cd12063	62	cd12063, SH3_Caskin2, Src Homology 3 domain of CAS	0.001
cd11762	57	cd11762, SH3_FCHSD_2, Second Src Homology 3 domain	0.001
cd11762	57	cd11762, SH3_FCHSD_2, Second Src Homology 3 domain	0.001
cd11766	53	cd11766, SH3_Nck_2, Second Src Homology 3 domain o	0.002
cd11766	53	cd11766, SH3_Nck_2, Second Src Homology 3 domain o	0.002
cd12039	62	cd12039, SH3_MPP3, Src Homology 3 domain of Membra	0.002
cd12039	62	cd12039, SH3_MPP3, Src Homology 3 domain of Membra	0.002
cd11882	54	cd11882, SH3_GRAF-like, Src Homology 3 domain of G	0.002
cd11882	54	cd11882, SH3_GRAF-like, Src Homology 3 domain of G	0.002
cd11882	54	cd11882, SH3_GRAF-like, Src Homology 3 domain of G	0.002
cd11882	54	cd11882, SH3_GRAF-like, Src Homology 3 domain of G	0.002
cd11992	52	cd11992, SH3_Intersectin2_3, Third Src homology 3	0.002
cd11992	52	cd11992, SH3_Intersectin2_3, Third Src homology 3	0.002
cd11952	56	cd11952, SH3_iASPP, Src Homology 3 (SH3) domain of	0.002
cd11952	56	cd11952, SH3_iASPP, Src Homology 3 (SH3) domain of	0.002
cd10371	100	cd10371, SH2_Src_Blk, Src homology 2 (SH2) domain	0.002
cd10371	100	cd10371, SH2_Src_Blk, Src homology 2 (SH2) domain	0.002
cd11841	54	cd11841, SH3_SH3YL1_like, Src homology 3 domain of	0.003
cd11841	54	cd11841, SH3_SH3YL1_like, Src homology 3 domain of	0.003
cd12060	58	cd12060, SH3_alphaPIX, Src Homology 3 domain of al	0.003
cd12060	58	cd12060, SH3_alphaPIX, Src Homology 3 domain of al	0.003
cd11875	55	cd11875, SH3_CD2AP-like_3, Third Src Homology 3 do	0.003
cd11875	55	cd11875, SH3_CD2AP-like_3, Third Src Homology 3 do	0.003
cd11781	53	cd11781, SH3_Sorbs_1, First Src Homology 3 domain	0.003
cd11781	53	cd11781, SH3_Sorbs_1, First Src Homology 3 domain	0.003
cd11972	61	cd11972, SH3_Abi2, Src homology 3 domain of Abl In	0.003
cd11972	61	cd11972, SH3_Abi2, Src homology 3 domain of Abl In	0.003
cd12044	53	cd12044, SH3_SKAP1, Src Homology 3 domain of Src K	0.003
cd12044	53	cd12044, SH3_SKAP1, Src Homology 3 domain of Src K	0.003
cd11785	55	cd11785, SH3_SH3RF_C, C-terminal (Fourth) Src Homo	0.003
cd11785	55	cd11785, SH3_SH3RF_C, C-terminal (Fourth) Src Homo	0.003
cd10399	106	cd10399, SH2_Tec_Bmx, Src homology 2 (SH2) domain	0.003
cd10399	106	cd10399, SH2_Tec_Bmx, Src homology 2 (SH2) domain	0.003
cd11833	53	cd11833, SH3_Stac_1, First C-terminal Src homology	0.003
cd11833	53	cd11833, SH3_Stac_1, First C-terminal Src homology	0.003
cd12053	56	cd12053, SH3_CD2AP_1, First Src Homology 3 domain	0.003
cd12053	56	cd12053, SH3_CD2AP_1, First Src Homology 3 domain	0.003
cd11856	53	cd11856, SH3_p47phox_like, Src homology 3 domains	0.003
cd11856	53	cd11856, SH3_p47phox_like, Src homology 3 domains	0.003
cd11929	54	cd11929, SH3_SH3RF2_1, First Src Homology 3 domain	0.003
cd11929	54	cd11929, SH3_SH3RF2_1, First Src Homology 3 domain	0.003
cd11886	55	cd11886, SH3_BOI, Src Homology 3 domain of fungal	0.003
cd11886	55	cd11886, SH3_BOI, Src Homology 3 domain of fungal	0.003
cd11771	60	cd11771, SH3_Pex13p_fungal, Src Homology 3 domain	0.004
cd11771	60	cd11771, SH3_Pex13p_fungal, Src Homology 3 domain	0.004
cd11836	55	cd11836, SH3_Intersectin_1, First Src homology 3 d	0.004
cd11836	55	cd11836, SH3_Intersectin_1, First Src homology 3 d	0.004
cd11887	60	cd11887, SH3_Bbc1, Src Homology 3 domain of Bbc1 a	0.004
cd11887	60	cd11887, SH3_Bbc1, Src Homology 3 domain of Bbc1 a	0.004
cd12034	61	cd12034, SH3_MPP4, Src Homology 3 domain of Membra	0.004
cd12034	61	cd12034, SH3_MPP4, Src Homology 3 domain of Membra	0.004
cd12058	58	cd12058, SH3_MLK4, Src Homology 3 domain of Mixed	0.004
cd12058	58	cd12058, SH3_MLK4, Src Homology 3 domain of Mixed	0.004

>gnl|CDD|198180 cd09926, SH2_CRK_like, Src homology 2 domain found in cancer-related signaling adaptor protein CRK

 Score =  161 bits (410), Expect = 7e-48
 Identities = 62/105 (59%), Positives = 81/105 (77%), Gaps = 2/105 (1%)

Query: 5   FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 64
           FD  DR+SWYFG M+RQEAQ +L  ++  G FLVRDS+TI G+YVL V EN++VSHYIIN
Sbjct: 1   FDSSDRSSWYFGPMSRQEAQELLQGQRH-GVFLVRDSSTIPGDYVLSVSENSRVSHYIIN 59

Query: 65  KIT-NTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK 108
            +      Q+ Y+IGD+ F DLP+LL FYK+HYLDT+ LI+PA++
Sbjct: 60  SLGQPAPNQSRYRIGDQEFDDLPALLEFYKLHYLDTTTLIEPASR 104

SH2 domain in the CRK proteins. CRKI (SH2-SH3) and CRKII (SH2-SH3-SH3) are splicing isoforms of the oncoprotein CRK. CRKs regulate transcription and cytoskeletal reorganization for cell growth and motility by linking tyrosine kinases to small G proteins. The SH2 domain of CRK associates with tyrosine-phosphorylated receptors or components of focal adhesions, such as p130Cas and paxillin. CRK transmits signals to small G proteins through effectors that bind its SH3 domain, such as C3G, the guanine-nucleotide exchange factor (GEF) for Rap1 and R-Ras, and DOCK180, the GEF for Rac6. The binding of p130Cas to the CRK-C3G complex activates Rap1, leading to regulation of cell adhesion, and activates R-Ras, leading to JNK-mediated activation of cell proliferation, whereas the binding of CRK DOCK180 induces Rac1-mediated activation of cellular migration. The activity of the different splicing isoforms varies greatly with CRKI displaying substantial transforming activity, CRKII less so, and phosphorylated CRKII with no biological activity whatsoever. CRKII has a linker region with a phosphorylated Tyr and an additional C-terminal SH3 domain. The phosphorylated Tyr creates a binding site for its SH2 domain which disrupts the association between CRK and its SH2 target proteins. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 106

>gnl|CDD|198180 cd09926, SH2_CRK_like, Src homology 2 domain found in cancer-related signaling adaptor protein CRK

 Score =  161 bits (410), Expect = 7e-48
 Identities = 62/105 (59%), Positives = 81/105 (77%), Gaps = 2/105 (1%)

Query: 280 FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 339
           FD  DR+SWYFG M+RQEAQ +L  ++  G FLVRDS+TI G+YVL V EN++VSHYIIN
Sbjct: 1   FDSSDRSSWYFGPMSRQEAQELLQGQRH-GVFLVRDSSTIPGDYVLSVSENSRVSHYIIN 59

Query: 340 KIT-NTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK 383
            +      Q+ Y+IGD+ F DLP+LL FYK+HYLDT+ LI+PA++
Sbjct: 60  SLGQPAPNQSRYRIGDQEFDDLPALLEFYKLHYLDTTTLIEPASR 104

SH2 domain in the CRK proteins. CRKI (SH2-SH3) and CRKII (SH2-SH3-SH3) are splicing isoforms of the oncoprotein CRK. CRKs regulate transcription and cytoskeletal reorganization for cell growth and motility by linking tyrosine kinases to small G proteins. The SH2 domain of CRK associates with tyrosine-phosphorylated receptors or components of focal adhesions, such as p130Cas and paxillin. CRK transmits signals to small G proteins through effectors that bind its SH3 domain, such as C3G, the guanine-nucleotide exchange factor (GEF) for Rap1 and R-Ras, and DOCK180, the GEF for Rac6. The binding of p130Cas to the CRK-C3G complex activates Rap1, leading to regulation of cell adhesion, and activates R-Ras, leading to JNK-mediated activation of cell proliferation, whereas the binding of CRK DOCK180 induces Rac1-mediated activation of cellular migration. The activity of the different splicing isoforms varies greatly with CRKI displaying substantial transforming activity, CRKII less so, and phosphorylated CRKII with no biological activity whatsoever. CRKII has a linker region with a phosphorylated Tyr and an additional C-terminal SH3 domain. The phosphorylated Tyr creates a binding site for its SH2 domain which disrupts the association between CRK and its SH2 target proteins. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 106

>gnl|CDD|212693 cd11759, SH3_CRK_C, C-terminal Src Homology 3 domain of Ct10 Regulator of Kinase adaptor proteins

 Score =  121 bits (304), Expect = 2e-33
 Identities = 45/57 (78%), Positives = 51/57 (89%)

Query: 205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEF 261
           PA+ARV Q RVPNAYDKTAL LE+GD++KVTK N++GQWEGELNGK GHFPFTHVE 
Sbjct: 1   PAYARVIQKRVPNAYDKTALALEVGDLVKVTKINVSGQWEGELNGKVGHFPFTHVEL 57

CRK adaptor proteins consists of SH2 and SH3 domains, which bind tyrosine-phosphorylated peptides and proline-rich motifs, respectively. They function downstream of protein tyrosine kinases in many signaling pathways started by various extracellular signals, including growth and differentiation factors. Cellular CRK (c-CRK) contains a single SH2 domain, followed by N-terminal and C-terminal SH3 domains. It is involved in the regulation of many cellular processes including cell growth, motility, adhesion, and apoptosis. CRK has been implicated in the malignancy of various human cancers. The C-terminal SH3 domain of CRK has not been shown to bind any target protein; it acts as a negative regulator of CRK function by stabilizing a structure that inhibits the access by target proteins to the N-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212693 cd11759, SH3_CRK_C, C-terminal Src Homology 3 domain of Ct10 Regulator of Kinase adaptor proteins

 Score =  121 bits (304), Expect = 2e-33
 Identities = 45/57 (78%), Positives = 51/57 (89%)

Query: 480 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEF 536
           PA+ARV Q RVPNAYDKTAL LE+GD++KVTK N++GQWEGELNGK GHFPFTHVE 
Sbjct: 1   PAYARVIQKRVPNAYDKTALALEVGDLVKVTKINVSGQWEGELNGKVGHFPFTHVEL 57

CRK adaptor proteins consists of SH2 and SH3 domains, which bind tyrosine-phosphorylated peptides and proline-rich motifs, respectively. They function downstream of protein tyrosine kinases in many signaling pathways started by various extracellular signals, including growth and differentiation factors. Cellular CRK (c-CRK) contains a single SH2 domain, followed by N-terminal and C-terminal SH3 domains. It is involved in the regulation of many cellular processes including cell growth, motility, adhesion, and apoptosis. CRK has been implicated in the malignancy of various human cancers. The C-terminal SH3 domain of CRK has not been shown to bind any target protein; it acts as a negative regulator of CRK function by stabilizing a structure that inhibits the access by target proteins to the N-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212692 cd11758, SH3_CRK_N, N-terminal Src Homology 3 domain of Ct10 Regulator of Kinase adaptor proteins

 Score =  104 bits (262), Expect = 1e-27
 Identities = 33/55 (60%), Positives = 40/55 (72%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           E V A +DF GND +DLPFKK +IL V+ K EE WW A+N  G+ G IPVPYV+K
Sbjct: 1   EYVRALFDFPGNDDEDLPFKKGEILTVIRKPEEQWWNARNSEGKTGMIPVPYVEK 55

CRK adaptor proteins consists of SH2 and SH3 domains, which bind tyrosine-phosphorylated peptides and proline-rich motifs, respectively. They function downstream of protein tyrosine kinases in many signaling pathways started by various extracellular signals, including growth and differentiation factors. Cellular CRK (c-CRK) contains a single SH2 domain, followed by N-terminal and C-terminal SH3 domains. It is involved in the regulation of many cellular processes including cell growth, motility, adhesion, and apoptosis. CRK has been implicated in the malignancy of various human cancers. The N-terminal SH3 domain of CRK binds a number of target proteins including DOCK180, C3G, SOS, and cABL. The CRK family includes two alternatively spliced protein forms, CRKI and CRKII, that are expressed by the CRK gene, and the CRK-like (CRKL) protein, which is expressed by a distinct gene (CRKL). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212692 cd11758, SH3_CRK_N, N-terminal Src Homology 3 domain of Ct10 Regulator of Kinase adaptor proteins

 Score =  104 bits (262), Expect = 1e-27
 Identities = 33/55 (60%), Positives = 40/55 (72%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 440
           E V A +DF GND +DLPFKK +IL V+ K EE WW A+N  G+ G IPVPYV+K
Sbjct: 1   EYVRALFDFPGNDDEDLPFKKGEILTVIRKPEEQWWNARNSEGKTGMIPVPYVEK 55

CRK adaptor proteins consists of SH2 and SH3 domains, which bind tyrosine-phosphorylated peptides and proline-rich motifs, respectively. They function downstream of protein tyrosine kinases in many signaling pathways started by various extracellular signals, including growth and differentiation factors. Cellular CRK (c-CRK) contains a single SH2 domain, followed by N-terminal and C-terminal SH3 domains. It is involved in the regulation of many cellular processes including cell growth, motility, adhesion, and apoptosis. CRK has been implicated in the malignancy of various human cancers. The N-terminal SH3 domain of CRK binds a number of target proteins including DOCK180, C3G, SOS, and cABL. The CRK family includes two alternatively spliced protein forms, CRKI and CRKII, that are expressed by the CRK gene, and the CRK-like (CRKL) protein, which is expressed by a distinct gene (CRKL). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|215658 pfam00017, SH2, SH2 domain

 Score = 86.1 bits (214), Expect = 9e-21
 Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 3/80 (3%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
          WY G ++R+EA+ +LL+ K +G FLVR+S +  G+Y L V+++ +V HY I      +  
Sbjct: 1  WYHGKISREEAERLLLNPKPDGTFLVRESESKPGDYTLSVRDDGRVKHYRIQS---LDNG 57

Query: 73 TCYKIGDKTFSDLPSLLAFY 92
            Y  G  TF+ LP L+  Y
Sbjct: 58 GYYISGGVTFNSLPELVEHY 77

Length = 77

>gnl|CDD|215658 pfam00017, SH2, SH2 domain

 Score = 86.1 bits (214), Expect = 9e-21
 Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 3/80 (3%)

Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 347
           WY G ++R+EA+ +LL+ K +G FLVR+S +  G+Y L V+++ +V HY I      +  
Sbjct: 1   WYHGKISREEAERLLLNPKPDGTFLVRESESKPGDYTLSVRDDGRVKHYRIQS---LDNG 57

Query: 348 TCYKIGDKTFSDLPSLLAFY 367
             Y  G  TF+ LP L+  Y
Sbjct: 58  GYYISGGVTFNSLPELVEHY 77

Length = 77

>gnl|CDD|214585 smart00252, SH2, Src homology 2 domains

 Score = 84.2 bits (209), Expect = 6e-20
 Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 4/85 (4%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
          WY G ++R+EA+ +L +E D G FLVRDS +  G+YVL V+   KV HY I +    E  
Sbjct: 3  WYHGFISREEAEKLLKNEGD-GDFLVRDSESSPGDYVLSVRVKGKVKHYRIRR---NEDG 58

Query: 73 TCYKIGDKTFSDLPSLLAFYKVHYL 97
            Y  G + F  L  L+  Y+ + L
Sbjct: 59 KFYLEGGRKFPSLVELVEHYQKNSL 83

Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae. Length = 84

>gnl|CDD|214585 smart00252, SH2, Src homology 2 domains

 Score = 84.2 bits (209), Expect = 6e-20
 Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 4/85 (4%)

Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 347
           WY G ++R+EA+ +L +E D G FLVRDS +  G+YVL V+   KV HY I +    E  
Sbjct: 3   WYHGFISREEAEKLLKNEGD-GDFLVRDSESSPGDYVLSVRVKGKVKHYRIRR---NEDG 58

Query: 348 TCYKIGDKTFSDLPSLLAFYKVHYL 372
             Y  G + F  L  L+  Y+ + L
Sbjct: 59  KFYLEGGRKFPSLVELVEHYQKNSL 83

Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae. Length = 84

>gnl|CDD|198173 cd00173, SH2, Src homology 2 (SH2) domain

 Score = 83.7 bits (207), Expect = 7e-20
 Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 4/82 (4%)

Query: 12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVK-ENNKVSHYIINKITNTE 70
           W+ G ++R+EA+ +L  + D G FLVR+S++  G+YVL V+  + KV HY+I +  N  
Sbjct: 1  PWFHGSISREEAERLLRGKPD-GTFLVRESSSEPGDYVLSVRSGDGKVKHYLIER--NEG 57

Query: 71 QQTCYKIGDKTFSDLPSLLAFY 92
                   +TF  LP L+  Y
Sbjct: 58 GYYLLGGSGRTFPSLPELVEHY 79

In general, SH2 domains are involved in signal transduction; they bind pTyr-containing polypeptide ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. They are present in a wide array of proteins including: adaptor proteins (Nck1, Crk, Grb2), scaffolds (Slp76, Shc, Dapp1), kinases (Src, Syk, Fps, Tec), phosphatases (Shp-1, Shp-2), transcription factors (STAT1), Ras signaling molecules (Ras-Gap), ubiquitination factors (c-Cbl), cytoskeleton regulators (Tensin), signal regulators (SAP), and phospholipid second messengers (PLCgamma), amongst others. Length = 79

>gnl|CDD|198173 cd00173, SH2, Src homology 2 (SH2) domain

 Score = 83.7 bits (207), Expect = 7e-20
 Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 4/82 (4%)

Query: 287 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVK-ENNKVSHYIINKITNTE 345
            W+ G ++R+EA+ +L  + D G FLVR+S++  G+YVL V+  + KV HY+I +  N  
Sbjct: 1   PWFHGSISREEAERLLRGKPD-GTFLVRESSSEPGDYVLSVRSGDGKVKHYLIER--NEG 57

Query: 346 QQTCYKIGDKTFSDLPSLLAFY 367
                    +TF  LP L+  Y
Sbjct: 58  GYYLLGGSGRTFPSLPELVEHY 79

In general, SH2 domains are involved in signal transduction; they bind pTyr-containing polypeptide ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. They are present in a wide array of proteins including: adaptor proteins (Nck1, Crk, Grb2), scaffolds (Slp76, Shc, Dapp1), kinases (Src, Syk, Fps, Tec), phosphatases (Shp-1, Shp-2), transcription factors (STAT1), Ras signaling molecules (Ras-Gap), ubiquitination factors (c-Cbl), cytoskeleton regulators (Tensin), signal regulators (SAP), and phospholipid second messengers (PLCgamma), amongst others. Length = 79

>gnl|CDD|214620 smart00326, SH3, Src homology 3 domains

 Score = 80.3 bits (199), Expect = 6e-19
 Identities = 22/55 (40%), Positives = 32/55 (58%)

Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
             +V A YD+   DPD+L FKK DI+ V+ K ++ WW  +   G+ G  P  YV+
Sbjct: 2   GPQVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVE 56

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations. Length = 56

>gnl|CDD|214620 smart00326, SH3, Src homology 3 domains

 Score = 80.3 bits (199), Expect = 6e-19
 Identities = 22/55 (40%), Positives = 32/55 (58%)

Query: 385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
             +V A YD+   DPD+L FKK DI+ V+ K ++ WW  +   G+ G  P  YV+
Sbjct: 2   GPQVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVE 56

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations. Length = 56

>gnl|CDD|215659 pfam00018, SH3_1, SH3 domain

 Score = 73.0 bits (180), Expect = 2e-16
 Identities = 20/47 (42%), Positives = 30/47 (63%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPV 160
           +A YD+   +PD+L FKK DI+IV+ K ++ WW  +   G+ G IP 
Sbjct: 1   VALYDYTAREPDELSFKKGDIIIVLEKSDDGWWKGRLKGGKEGLIPS 47

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 47

>gnl|CDD|215659 pfam00018, SH3_1, SH3 domain

 Score = 73.0 bits (180), Expect = 2e-16
 Identities = 20/47 (42%), Positives = 30/47 (63%)

Query: 389 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPV 435
           +A YD+   +PD+L FKK DI+IV+ K ++ WW  +   G+ G IP 
Sbjct: 1   VALYDYTAREPDELSFKKGDIIIVLEKSDDGWWKGRLKGGKEGLIPS 47

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 47

>gnl|CDD|212690 cd00174, SH3, Src Homology 3 domain superfamily

 Score = 71.7 bits (177), Expect = 5e-16
 Identities = 20/51 (39%), Positives = 28/51 (54%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPY 162
              A YD++  D D+L FKK DI+ V+ KD++ WW  +   G  G  P  Y
Sbjct: 1   YARALYDYEAQDDDELSFKKGDIITVLEKDDDGWWEGELNGGREGLFPANY 51

Src Homology 3 (SH3) domains are protein interaction domains that bind proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. Thus, they are referred to as proline-recognition domains (PRDs). SH3 domains are less selective and show more diverse specificity compared to other PRDs. They have been shown to bind peptide sequences that lack the PxxP motif; examples include the PxxDY motif of Eps8 and the RKxxYxxY sequence in SKAP55. SH3 domain containing proteins play versatile and diverse roles in the cell, including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies, among others. Many members of this superfamily are adaptor proteins that associate with a number of protein partners, facilitating complex formation and signal transduction. Length = 51

>gnl|CDD|212690 cd00174, SH3, Src Homology 3 domain superfamily

 Score = 71.7 bits (177), Expect = 5e-16
 Identities = 20/51 (39%), Positives = 28/51 (54%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPY 437
              A YD++  D D+L FKK DI+ V+ KD++ WW  +   G  G  P  Y
Sbjct: 1   YARALYDYEAQDDDELSFKKGDIITVLEKDDDGWWEGELNGGREGLFPANY 51

Src Homology 3 (SH3) domains are protein interaction domains that bind proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. Thus, they are referred to as proline-recognition domains (PRDs). SH3 domains are less selective and show more diverse specificity compared to other PRDs. They have been shown to bind peptide sequences that lack the PxxP motif; examples include the PxxDY motif of Eps8 and the RKxxYxxY sequence in SKAP55. SH3 domain containing proteins play versatile and diverse roles in the cell, including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies, among others. Many members of this superfamily are adaptor proteins that associate with a number of protein partners, facilitating complex formation and signal transduction. Length = 51

>gnl|CDD|212703 cd11769, SH3_CSK, Src Homology 3 domain of C-terminal Src kinase

 Score = 71.2 bits (175), Expect = 8e-16
 Identities = 29/56 (51%), Positives = 38/56 (67%), Gaps = 3/56 (5%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVV--SKDEEHWWTAQNISGEVGSIPVPYVQK 165
           + IAKY+F+G   +DLPFKK DIL +V  +KD  +W+ A+N  G  G IP  YVQK
Sbjct: 3   ECIAKYNFNGASEEDLPFKKGDILTIVAVTKD-PNWYKAKNKDGREGMIPANYVQK 57

CSK is a cytoplasmic (or nonreceptor) tyr kinase containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, CSK is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. CSK catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. It is expressed in a wide variety of tissues and plays a role, as a regulator of Src, in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, CSK also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212703 cd11769, SH3_CSK, Src Homology 3 domain of C-terminal Src kinase

 Score = 71.2 bits (175), Expect = 8e-16
 Identities = 29/56 (51%), Positives = 38/56 (67%), Gaps = 3/56 (5%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVV--SKDEEHWWTAQNISGEVGSIPVPYVQK 440
           + IAKY+F+G   +DLPFKK DIL +V  +KD  +W+ A+N  G  G IP  YVQK
Sbjct: 3   ECIAKYNFNGASEEDLPFKKGDILTIVAVTKD-PNWYKAKNKDGREGMIPANYVQK 57

CSK is a cytoplasmic (or nonreceptor) tyr kinase containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, CSK is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. CSK catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. It is expressed in a wide variety of tissues and plays a role, as a regulator of Src, in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, CSK also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212702 cd11768, SH3_Tec_like, Src Homology 3 domain of Tec-like Protein Tyrosine Kinases

 Score = 70.0 bits (172), Expect = 2e-15
 Identities = 22/54 (40%), Positives = 32/54 (59%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
            V+A YDF   +P DLP +K +  +V+    EHWW A++ +G  G IP  YV +
Sbjct: 1   IVVALYDFQPIEPGDLPLEKGEEYVVLDDSNEHWWRARDKNGNEGYIPSNYVTE 54

The Tec (Tyrosine kinase expressed in hepatocellular carcinoma) subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. They are cytoplasmic (or nonreceptor) tyr kinases containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212702 cd11768, SH3_Tec_like, Src Homology 3 domain of Tec-like Protein Tyrosine Kinases

 Score = 70.0 bits (172), Expect = 2e-15
 Identities = 22/54 (40%), Positives = 32/54 (59%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 440
            V+A YDF   +P DLP +K +  +V+    EHWW A++ +G  G IP  YV +
Sbjct: 1   IVVALYDFQPIEPGDLPLEKGEEYVVLDDSNEHWWRARDKNGNEGYIPSNYVTE 54

The Tec (Tyrosine kinase expressed in hepatocellular carcinoma) subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. They are cytoplasmic (or nonreceptor) tyr kinases containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|198200 cd10337, SH2_BCAR3, Src homology 2 (SH2) domain in the Breast Cancer Anti-estrogen Resistance protein 3

 Score = 68.9 bits (169), Expect = 5e-14
 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 7/84 (8%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
          WY G + RQ A++++  E D   FLVRDS +  G+YVL  +   +  H+ IN++     +
Sbjct: 8  WYHGRIPRQVAESLVQREGD---FLVRDSLSSPGDYVLTCRWKGQPLHFKINRVVLRPSE 64

Query: 73 TC----YKIGDKTFSDLPSLLAFY 92
                Y+  D+ F  +P+L+ FY
Sbjct: 65 AYTRVQYQFEDEQFDSIPALVHFY 88

BCAR3 is part of a growing family of guanine nucleotide exchange factors is responsible for activation of Ras-family GTPases, including Sos1 and 2, GRF1 and 2, CalDAG-GEF/GRP1-4, C3G, cAMP-GEF/Epac 1 and 2, PDZ-GEFs, MR-GEF, RalGDS family members, RalGPS, RasGEF, Smg GDS, and phospholipase C(epsilon). 12102558 21262352 BCAR3 binds to the carboxy-terminus of BCAR1/p130Cas, a focal adhesion adapter protein. Over expression of BCAR1 (p130Cas) and BCAR3 induces estrogen independent growth in normally estrogen-dependent cell lines. They have been linked to resistance to anti-estrogens in breast cancer, Rac activation, and cell motility, though the BCAR3/p130Cas complex is not required for this activity in BCAR3. Many BCAR3-mediated signaling events in epithelial and mesenchymal cells are independent of p130Cas association. Structurally these proteins contain a single SH2 domain upstream of their RasGEF domain, which is responsible for the ability of BCAR3 to enhance p130Cas over-expression-induced migration. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 136

>gnl|CDD|198200 cd10337, SH2_BCAR3, Src homology 2 (SH2) domain in the Breast Cancer Anti-estrogen Resistance protein 3

 Score = 68.9 bits (169), Expect = 5e-14
 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 7/84 (8%)

Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 347
           WY G + RQ A++++  E D   FLVRDS +  G+YVL  +   +  H+ IN++     +
Sbjct: 8   WYHGRIPRQVAESLVQREGD---FLVRDSLSSPGDYVLTCRWKGQPLHFKINRVVLRPSE 64

Query: 348 TC----YKIGDKTFSDLPSLLAFY 367
                 Y+  D+ F  +P+L+ FY
Sbjct: 65  AYTRVQYQFEDEQFDSIPALVHFY 88

BCAR3 is part of a growing family of guanine nucleotide exchange factors is responsible for activation of Ras-family GTPases, including Sos1 and 2, GRF1 and 2, CalDAG-GEF/GRP1-4, C3G, cAMP-GEF/Epac 1 and 2, PDZ-GEFs, MR-GEF, RalGDS family members, RalGPS, RasGEF, Smg GDS, and phospholipase C(epsilon). 12102558 21262352 BCAR3 binds to the carboxy-terminus of BCAR1/p130Cas, a focal adhesion adapter protein. Over expression of BCAR1 (p130Cas) and BCAR3 induces estrogen independent growth in normally estrogen-dependent cell lines. They have been linked to resistance to anti-estrogens in breast cancer, Rac activation, and cell motility, though the BCAR3/p130Cas complex is not required for this activity in BCAR3. Many BCAR3-mediated signaling events in epithelial and mesenchymal cells are independent of p130Cas association. Structurally these proteins contain a single SH2 domain upstream of their RasGEF domain, which is responsible for the ability of BCAR3 to enhance p130Cas over-expression-induced migration. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 136

>gnl|CDD|198223 cd10360, SH2_Srm, Src homology 2 (SH2) domain found in Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristoylation sites (srm)

 Score = 65.0 bits (158), Expect = 3e-13
 Identities = 32/81 (39%), Positives = 44/81 (54%), Gaps = 4/81 (4%)

Query: 13 WYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 71
          WYF  ++R +AQ +LLS  +  GAFL+R S + LG Y L V+   KV HY   +I     
Sbjct: 2  WYFSGISRTQAQQLLLSPPNEPGAFLIRPSESSLGGYSLSVRAQAKVCHY---RICMAPS 58

Query: 72 QTCYKIGDKTFSDLPSLLAFY 92
           + Y    + F  L  LLA+Y
Sbjct: 59 GSLYLQKGRLFPGLEELLAYY 79

Srm is a nonreceptor protein kinase that has two SH2 domains, a SH3 domain, and a kinase domain with a tyrosine residue for autophosphorylation. However it lacks an N-terminal glycine for myristoylation and a C-terminal tyrosine which suppresses kinase activity when phosphorylated. Srm is most similar to members of the Tec family who other members include: Tec, Btk/Emb, and Itk/Tsk/Emt. However Srm differs in its N-terminal unique domain it being much smaller than in the Tec family and is closer to Src. Srm is thought to be a new family of nonreceptor tyrosine kinases that may be redundant in function. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 79

>gnl|CDD|198223 cd10360, SH2_Srm, Src homology 2 (SH2) domain found in Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristoylation sites (srm)

 Score = 65.0 bits (158), Expect = 3e-13
 Identities = 32/81 (39%), Positives = 44/81 (54%), Gaps = 4/81 (4%)

Query: 288 WYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 346
           WYF  ++R +AQ +LLS  +  GAFL+R S + LG Y L V+   KV HY   +I     
Sbjct: 2   WYFSGISRTQAQQLLLSPPNEPGAFLIRPSESSLGGYSLSVRAQAKVCHY---RICMAPS 58

Query: 347 QTCYKIGDKTFSDLPSLLAFY 367
            + Y    + F  L  LLA+Y
Sbjct: 59  GSLYLQKGRLFPGLEELLAYY 79

Srm is a nonreceptor protein kinase that has two SH2 domains, a SH3 domain, and a kinase domain with a tyrosine residue for autophosphorylation. However it lacks an N-terminal glycine for myristoylation and a C-terminal tyrosine which suppresses kinase activity when phosphorylated. Srm is most similar to members of the Tec family who other members include: Tec, Btk/Emb, and Itk/Tsk/Emt. However Srm differs in its N-terminal unique domain it being much smaller than in the Tec family and is closer to Src. Srm is thought to be a new family of nonreceptor tyrosine kinases that may be redundant in function. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 79

>gnl|CDD|198210 cd10347, SH2_Nterm_shark_like, N-terminal Src homology 2 (SH2) domain found in SH2 domains, ANK, and kinase domain (shark) proteins

 Score = 64.7 bits (158), Expect = 4e-13
 Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 3/82 (3%)

Query: 12 SWYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTE 70
           WY G ++R+ A+A+LL     +G FLVR+S +  G+YVL +    +V HY I +  + E
Sbjct: 2  RWYHGKISREVAEALLLREGGRDGLFLVRESTSAPGDYVLSLLAQGEVLHYQIRR--HGE 59

Query: 71 QQTCYKIGDKTFSDLPSLLAFY 92
                 G   F  L +L+  Y
Sbjct: 60 DAFFSDDGPLIFHGLDTLIEHY 81

These non-receptor protein-tyrosine kinases contain two SH2 domains, five ankyrin (ANK)-like repeats, and a potential tyrosine phosphorylation site in the carboxyl-terminal tail which resembles the phosphorylation site in members of the src family. Like, mammalian non-receptor protein-tyrosine kinases, ZAP-70 and syk proteins, they do not have SH3 domains. However, the presence of ANK makes these unique among protein-tyrosine kinases. Both tyrosine kinases and ANK repeats have been shown to transduce developmental signals, and SH2 domains are known to participate intimately in tyrosine kinase signaling. These tyrosine kinases are believed to be involved in epithelial cell polarity. The members of this family include the shark (SH2 domains, ANK, and kinase domain) gene in Drosophila and yellow fever mosquitos, as well as the hydra protein HTK16. Drosophila Shark is proposed to transduce intracellularly the Crumbs, a protein necessary for proper organization of ectodermal epithelia, intercellular signal. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 81

>gnl|CDD|198210 cd10347, SH2_Nterm_shark_like, N-terminal Src homology 2 (SH2) domain found in SH2 domains, ANK, and kinase domain (shark) proteins

 Score = 64.7 bits (158), Expect = 4e-13
 Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 3/82 (3%)

Query: 287 SWYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTE 345
            WY G ++R+ A+A+LL     +G FLVR+S +  G+YVL +    +V HY I +  + E
Sbjct: 2   RWYHGKISREVAEALLLREGGRDGLFLVRESTSAPGDYVLSLLAQGEVLHYQIRR--HGE 59

Query: 346 QQTCYKIGDKTFSDLPSLLAFY 367
                  G   F  L +L+  Y
Sbjct: 60  DAFFSDDGPLIFHGLDTLIEHY 81

These non-receptor protein-tyrosine kinases contain two SH2 domains, five ankyrin (ANK)-like repeats, and a potential tyrosine phosphorylation site in the carboxyl-terminal tail which resembles the phosphorylation site in members of the src family. Like, mammalian non-receptor protein-tyrosine kinases, ZAP-70 and syk proteins, they do not have SH3 domains. However, the presence of ANK makes these unique among protein-tyrosine kinases. Both tyrosine kinases and ANK repeats have been shown to transduce developmental signals, and SH2 domains are known to participate intimately in tyrosine kinase signaling. These tyrosine kinases are believed to be involved in epithelial cell polarity. The members of this family include the shark (SH2 domains, ANK, and kinase domain) gene in Drosophila and yellow fever mosquitos, as well as the hydra protein HTK16. Drosophila Shark is proposed to transduce intracellularly the Crumbs, a protein necessary for proper organization of ectodermal epithelia, intercellular signal. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 81

>gnl|CDD|199827 cd09933, SH2_Src_family, Src homology 2 (SH2) domain found in the Src family of non-receptor tyrosine kinases

 Score = 64.5 bits (158), Expect = 7e-13
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 9/89 (10%)

Query: 13 WYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCVKENNK-----VSHYIINKI 66
          W+FG + R++A+ +LL+  +  G FL+R+S T  G Y L V++ +      V HY   +I
Sbjct: 5  WFFGKIKRKDAEKLLLAPGNPRGTFLIRESETTPGAYSLSVRDGDDARGDTVKHY---RI 61

Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
             +    Y     TF  L  L+  Y   
Sbjct: 62 RKLDNGGYYITTRATFPTLQELVQHYSKD 90

The Src family kinases are nonreceptor tyrosine kinases that have been implicated in pathways regulating proliferation, angiogenesis, invasion and metastasis, and bone metabolism. It is thought that transforming ability of Src is linked to its ability to activate key signaling molecules in these pathways, rather than through direct activity. As such blocking Src activation has been a target for drug companies. Src family members can be divided into 3 groups based on their expression pattern: 1) Src, Fyn, and Yes; 2) Blk, Fgr, Hck, Lck, and Lyn; and 3) Frk-related kinases Frk/Rak and Iyk/Bsk Of these, cellular c-Src is the best studied and most frequently implicated in oncogenesis. The c-Src contains five distinct regions: a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. Src exists in both active and inactive conformations. Negative regulation occurs through phosphorylation of Tyr, resulting in an intramolecular association between phosphorylated Tyr and the SH2 domain of SRC, which locks the protein in a closed conformation. Further stabilization of the inactive state occurs through interactions between the SH3 domain and a proline-rich stretch of residues within the kinase domain. Conversely, dephosphorylation of Tyr allows SRC to assume an open conformation. Full activity requires additional autophosphorylation of a Tyr residue within the catalytic domain. Loss of the negative-regulatory C-terminal segment has been shown to result in increased activity and transforming potential. Phosphorylation of the C-terminal Tyr residue by C-terminal Src kinase (Csk) and Csk homology kinase results in increased intramolecular interactions and consequent Src inactivation. Specific phosphatases, protein tyrosine phosphatase a (PTPa) and the SH-containing phosphatases SHP1/SHP2, have also been shown to take a part in Src activation. Src is also activated by direct binding of focal adhesion kinase (Fak) and Crk-associated substrate (Cas) to the SH2 domain. SRC activity can also be regulated by numerous receptor tyrosine kinases (RTKs), such as Her2, epidermal growth factor receptor (EGFR), fibroblast growth factor receptor, platelet-derived growth factor receptor (PDGFR), and vascular endothelial growth factor receptor (VEGFR). In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|199827 cd09933, SH2_Src_family, Src homology 2 (SH2) domain found in the Src family of non-receptor tyrosine kinases

 Score = 64.5 bits (158), Expect = 7e-13
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 9/89 (10%)

Query: 288 WYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCVKENNK-----VSHYIINKI 341
           W+FG + R++A+ +LL+  +  G FL+R+S T  G Y L V++ +      V HY   +I
Sbjct: 5   WFFGKIKRKDAEKLLLAPGNPRGTFLIRESETTPGAYSLSVRDGDDARGDTVKHY---RI 61

Query: 342 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 370
              +    Y     TF  L  L+  Y   
Sbjct: 62  RKLDNGGYYITTRATFPTLQELVQHYSKD 90

The Src family kinases are nonreceptor tyrosine kinases that have been implicated in pathways regulating proliferation, angiogenesis, invasion and metastasis, and bone metabolism. It is thought that transforming ability of Src is linked to its ability to activate key signaling molecules in these pathways, rather than through direct activity. As such blocking Src activation has been a target for drug companies. Src family members can be divided into 3 groups based on their expression pattern: 1) Src, Fyn, and Yes; 2) Blk, Fgr, Hck, Lck, and Lyn; and 3) Frk-related kinases Frk/Rak and Iyk/Bsk Of these, cellular c-Src is the best studied and most frequently implicated in oncogenesis. The c-Src contains five distinct regions: a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. Src exists in both active and inactive conformations. Negative regulation occurs through phosphorylation of Tyr, resulting in an intramolecular association between phosphorylated Tyr and the SH2 domain of SRC, which locks the protein in a closed conformation. Further stabilization of the inactive state occurs through interactions between the SH3 domain and a proline-rich stretch of residues within the kinase domain. Conversely, dephosphorylation of Tyr allows SRC to assume an open conformation. Full activity requires additional autophosphorylation of a Tyr residue within the catalytic domain. Loss of the negative-regulatory C-terminal segment has been shown to result in increased activity and transforming potential. Phosphorylation of the C-terminal Tyr residue by C-terminal Src kinase (Csk) and Csk homology kinase results in increased intramolecular interactions and consequent Src inactivation. Specific phosphatases, protein tyrosine phosphatase a (PTPa) and the SH-containing phosphatases SHP1/SHP2, have also been shown to take a part in Src activation. Src is also activated by direct binding of focal adhesion kinase (Fak) and Crk-associated substrate (Cas) to the SH2 domain. SRC activity can also be regulated by numerous receptor tyrosine kinases (RTKs), such as Her2, epidermal growth factor receptor (EGFR), fibroblast growth factor receptor, platelet-derived growth factor receptor (PDGFR), and vascular endothelial growth factor receptor (VEGFR). In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|219499 pfam07653, SH3_2, Variant SH3 domain

 Score = 61.7 bits (151), Expect = 2e-12
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
            A D   L L+ GD++KV   + NG WEGE  G+ G  P ++VE
Sbjct: 9   VATDPNELSLKKGDVVKVLDKDDNGWWEGERGGRRGLVPSSYVE 52

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 53

>gnl|CDD|219499 pfam07653, SH3_2, Variant SH3 domain

 Score = 61.7 bits (151), Expect = 2e-12
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 492 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 535
            A D   L L+ GD++KV   + NG WEGE  G+ G  P ++VE
Sbjct: 9   VATDPNELSLKKGDVVKVLDKDDNGWWEGERGGRRGLVPSSYVE 52

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 53

>gnl|CDD|198185 cd09931, SH2_C-SH2_SHP_like, C-terminal Src homology 2 (C-SH2) domain found in SH2 domain Phosphatases (SHP) proteins

 Score = 61.9 bits (151), Expect = 4e-12
 Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 7/83 (8%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENN-KVSHYIINKITNTEQ 71
          W+ G ++ +EA+ +LL +   G+FLVR+S +  G++VL V+ ++ KV+H +I       +
Sbjct: 2  WFHGHLSGKEAEKLLLEKGKPGSFLVRESQSKPGDFVLSVRTDDDKVTHIMIR--CQGGK 59

Query: 72 QTCYKIGD-KTFSDLPSLLAFYK 93
             Y +G  + F  L  L+  YK
Sbjct: 60 ---YDVGGGEEFDSLTDLVEHYK 79

The SH2 domain phosphatases (SHP-1, SHP-2/Syp, Drosophila corkscrew (csw), and Caenorhabditis elegans Protein Tyrosine Phosphatase (Ptp-2)) are cytoplasmic signaling enzymes. They are both targeted and regulated by interactions of their SH2 domains with phosphotyrosine docking sites. These proteins contain two SH2 domains (N-SH2, C-SH2) followed by a tyrosine phosphatase (PTP) domain, and a C-terminal extension. Shp1 and Shp2 have two tyrosyl phosphorylation sites in their C-tails, which are phosphorylated differentially by receptor and nonreceptor PTKs. Csw retains the proximal tyrosine and Ptp-2 lacks both sites. Shp-binding proteins include receptors, scaffolding adapters, and inhibitory receptors. Some of these bind both Shp1 and Shp2 while others bind only one. Most proteins that bind a Shp SH2 domain contain one or more immuno-receptor tyrosine-based inhibitory motifs (ITIMs): [SIVL]xpYxx[IVL]. Shp1 N-SH2 domain blocks the catalytic domain and keeps the enzyme in the inactive conformation, and is thus believed to regulate the phosphatase activity of SHP-1. Its C-SH2 domain is thought to be involved in searching for phosphotyrosine activators. The SHP2 N-SH2 domain is a conformational switch; it either binds and inhibits the phosphatase, or it binds phosphoproteins and activates the enzyme. The C-SH2 domain contributes binding energy and specificity, but it does not have a direct role in activation. Csw SH2 domain function is essential, but either SH2 domain can fulfill this requirement. The role of the csw SH2 domains during Sevenless receptor tyrosine kinase (SEV) signaling is to bind Daughter of Sevenless rather than activated SEV. Ptp-2 acts in oocytes downstream of sheath/oocyte gap junctions to promote major sperm protein (MSP)-induced MAP Kinase (MPK-1) phosphorylation. Ptp-2 functions in the oocyte cytoplasm, not at the cell surface to inhibit multiple RasGAPs, resulting in sustained Ras activation. It is thought that MSP triggers PTP-2/Ras activation and ROS production to stimulate MPK-1 activity essential for oocyte maturation and that secreted MSP domains and Cu/Zn superoxide dismutases function antagonistically to control ROS and MAPK signaling. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 99

>gnl|CDD|198185 cd09931, SH2_C-SH2_SHP_like, C-terminal Src homology 2 (C-SH2) domain found in SH2 domain Phosphatases (SHP) proteins

 Score = 61.9 bits (151), Expect = 4e-12
 Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 7/83 (8%)

Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENN-KVSHYIINKITNTEQ 346
           W+ G ++ +EA+ +LL +   G+FLVR+S +  G++VL V+ ++ KV+H +I       +
Sbjct: 2   WFHGHLSGKEAEKLLLEKGKPGSFLVRESQSKPGDFVLSVRTDDDKVTHIMIR--CQGGK 59

Query: 347 QTCYKIGD-KTFSDLPSLLAFYK 368
              Y +G  + F  L  L+  YK
Sbjct: 60  ---YDVGGGEEFDSLTDLVEHYK 79

The SH2 domain phosphatases (SHP-1, SHP-2/Syp, Drosophila corkscrew (csw), and Caenorhabditis elegans Protein Tyrosine Phosphatase (Ptp-2)) are cytoplasmic signaling enzymes. They are both targeted and regulated by interactions of their SH2 domains with phosphotyrosine docking sites. These proteins contain two SH2 domains (N-SH2, C-SH2) followed by a tyrosine phosphatase (PTP) domain, and a C-terminal extension. Shp1 and Shp2 have two tyrosyl phosphorylation sites in their C-tails, which are phosphorylated differentially by receptor and nonreceptor PTKs. Csw retains the proximal tyrosine and Ptp-2 lacks both sites. Shp-binding proteins include receptors, scaffolding adapters, and inhibitory receptors. Some of these bind both Shp1 and Shp2 while others bind only one. Most proteins that bind a Shp SH2 domain contain one or more immuno-receptor tyrosine-based inhibitory motifs (ITIMs): [SIVL]xpYxx[IVL]. Shp1 N-SH2 domain blocks the catalytic domain and keeps the enzyme in the inactive conformation, and is thus believed to regulate the phosphatase activity of SHP-1. Its C-SH2 domain is thought to be involved in searching for phosphotyrosine activators. The SHP2 N-SH2 domain is a conformational switch; it either binds and inhibits the phosphatase, or it binds phosphoproteins and activates the enzyme. The C-SH2 domain contributes binding energy and specificity, but it does not have a direct role in activation. Csw SH2 domain function is essential, but either SH2 domain can fulfill this requirement. The role of the csw SH2 domains during Sevenless receptor tyrosine kinase (SEV) signaling is to bind Daughter of Sevenless rather than activated SEV. Ptp-2 acts in oocytes downstream of sheath/oocyte gap junctions to promote major sperm protein (MSP)-induced MAP Kinase (MPK-1) phosphorylation. Ptp-2 functions in the oocyte cytoplasm, not at the cell surface to inhibit multiple RasGAPs, resulting in sustained Ras activation. It is thought that MSP triggers PTP-2/Ras activation and ROS production to stimulate MPK-1 activity essential for oocyte maturation and that secreted MSP domains and Cu/Zn superoxide dismutases function antagonistically to control ROS and MAPK signaling. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 99

>gnl|CDD|199828 cd09941, SH2_Grb2_like, Src homology 2 domain found in Growth factor receptor-bound protein 2 (Grb2) and similar proteins

 Score = 61.9 bits (151), Expect = 5e-12
 Identities = 25/97 (25%), Positives = 52/97 (53%), Gaps = 4/97 (4%)

Query: 11  NSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTE 70
           + W+ G ++R EA+ IL++++ +GAFL+R+S +  G++ L VK  N V H+ + +    +
Sbjct: 3   HPWFHGKISRAEAEEILMNQRPDGAFLIRESESSPGDFSLSVKFGNDVQHFKVLR----D 58

Query: 71  QQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPAT 107
               Y +    F+ L  L+ +++   +  +  I    
Sbjct: 59  GAGKYFLWVVKFNSLNELVDYHRTTSVSRNQQIFLRD 95

The adaptor proteins here include homologs Grb2 in humans, Sex muscle abnormal protein 5 (Sem-5) in Caenorhabditis elegans, and Downstream of receptor kinase (drk) in Drosophila melanogaster. They are composed of one SH2 and two SH3 domains. Grb2/Sem-5/drk regulates the Ras pathway by linking the tyrosine kinases to the Ras guanine nucleotide releasing protein Sos, which converts Ras to the active GTP-bound state. The SH2 domain of Grb2/Sem-5/drk binds class II phosphotyrosyl peptides while its SH3 domain binds to Sos and Sos-derived, proline-rich peptides. Besides it function in Ras signaling, Grb2 is also thought to play a role in apoptosis. Unlike most SH2 structures in which the peptide binds in an extended conformation (such that the +3 peptide residue occupies a hydrophobic pocket in the protein, conferring a modest degree of selectivity), Grb2 forms several hydrogen bonds via main chain atoms with the side chain of +2 Asn. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 95

>gnl|CDD|199828 cd09941, SH2_Grb2_like, Src homology 2 domain found in Growth factor receptor-bound protein 2 (Grb2) and similar proteins

 Score = 61.9 bits (151), Expect = 5e-12
 Identities = 25/97 (25%), Positives = 52/97 (53%), Gaps = 4/97 (4%)

Query: 286 NSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTE 345
           + W+ G ++R EA+ IL++++ +GAFL+R+S +  G++ L VK  N V H+ + +    +
Sbjct: 3   HPWFHGKISRAEAEEILMNQRPDGAFLIRESESSPGDFSLSVKFGNDVQHFKVLR----D 58

Query: 346 QQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPAT 382
               Y +    F+ L  L+ +++   +  +  I    
Sbjct: 59  GAGKYFLWVVKFNSLNELVDYHRTTSVSRNQQIFLRD 95

The adaptor proteins here include homologs Grb2 in humans, Sex muscle abnormal protein 5 (Sem-5) in Caenorhabditis elegans, and Downstream of receptor kinase (drk) in Drosophila melanogaster. They are composed of one SH2 and two SH3 domains. Grb2/Sem-5/drk regulates the Ras pathway by linking the tyrosine kinases to the Ras guanine nucleotide releasing protein Sos, which converts Ras to the active GTP-bound state. The SH2 domain of Grb2/Sem-5/drk binds class II phosphotyrosyl peptides while its SH3 domain binds to Sos and Sos-derived, proline-rich peptides. Besides it function in Ras signaling, Grb2 is also thought to play a role in apoptosis. Unlike most SH2 structures in which the peptide binds in an extended conformation (such that the +3 peptide residue occupies a hydrophobic pocket in the protein, conferring a modest degree of selectivity), Grb2 forms several hydrogen bonds via main chain atoms with the side chain of +2 Asn. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 95

>gnl|CDD|212704 cd11770, SH3_Nephrocystin, Src Homology 3 domain of Nephrocystin (or Nephrocystin-1)

 Score = 60.4 bits (147), Expect = 6e-12
 Identities = 19/53 (35%), Positives = 28/53 (52%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
             A  DF      DL FKK ++L ++SK  + WW A+N  G  G +P  Y++ 
Sbjct: 2   YEALSDFQAEQEGDLSFKKGEVLRIISKRADGWWLAENSKGNRGLVPKTYLKV 54

Nephrocystin contains an SH3 domain involved in signaling pathways that regulate cell adhesion and cytoskeletal organization. It is a protein that in humans is associated with juvenile nephronophthisis, an inherited kidney disease characterized by renal fibrosis that lead to chronic renal failure in children. It is localized in cell-cell junctions in renal duct cells, and is known to interact with Ack1, an activated Cdc42-associated kinase. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212704 cd11770, SH3_Nephrocystin, Src Homology 3 domain of Nephrocystin (or Nephrocystin-1)

 Score = 60.4 bits (147), Expect = 6e-12
 Identities = 19/53 (35%), Positives = 28/53 (52%)

Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 440
             A  DF      DL FKK ++L ++SK  + WW A+N  G  G +P  Y++ 
Sbjct: 2   YEALSDFQAEQEGDLSFKKGEVLRIISKRADGWWLAENSKGNRGLVPKTYLKV 54

Nephrocystin contains an SH3 domain involved in signaling pathways that regulate cell adhesion and cytoskeletal organization. It is a protein that in humans is associated with juvenile nephronophthisis, an inherited kidney disease characterized by renal fibrosis that lead to chronic renal failure in children. It is localized in cell-cell junctions in renal duct cells, and is known to interact with Ack1, an activated Cdc42-associated kinase. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|198196 cd09943, SH2_Nck_family, Src homology 2 (SH2) domain found in the Nck family

 Score = 61.4 bits (149), Expect = 8e-12
 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 5/91 (5%)

Query: 11  NSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTE 70
             WY+G +TR +A+ +L      G FL+RDS +  G+Y + +K   +  H+   K+    
Sbjct: 1   QPWYYGRITRHQAETLLNEHGHEGDFLIRDSESNPGDYSVSLKAPGRNKHF---KVQV-- 55

Query: 71  QQTCYKIGDKTFSDLPSLLAFYKVHYLDTSP 101
               Y IG + F  +  L+  YK   + TS 
Sbjct: 56  VDNVYCIGQRKFHTMDELVEHYKKAPIFTSE 86

Nck proteins are adaptors that modulate actin cytoskeleton dynamics by linking proline-rich effector molecules to tyrosine kinases or phosphorylated signaling intermediates. There are two members known in this family: Nck1 (Nckalpha) and Nck2 (Nckbeta and Growth factor receptor-bound protein 4 (Grb4)). They are characterized by having 3 SH3 domains and a C-terminal SH2 domain. Nck1 and Nck2 have overlapping functions as determined by gene knockouts. Both bind receptor tyrosine kinases and other tyrosine-phosphorylated proteins through their SH2 domains. In addition they also bind distinct targets. Neuronal signaling proteins: EphrinB1, EphrinB2, and Disabled-1 (Dab-1) all bind to Nck-2 exclusively. And in the case of PDGFR, Tyr(P)751 binds to Nck1 while Tyr(P)1009 binds to Nck2. Nck1 and Nck2 have a role in the infection process of enteropathogenic Escherichia coli (EPEC). Their SH3 domains are involved in recruiting and activating the N-WASP/Arp2/3 complex inducing actin polymerization resulting in the production of pedestals, dynamic bacteria-presenting protrusions of the plasma membrane. A similar thing occurs in the vaccinia virus where motile plasma membrane projections are formed beneath the virus. Recently it has been shown that the SH2 domains of both Nck1 and Nck2 bind the G-protein coupled receptor kinase-interacting protein 1 (GIT1) in a phosphorylation-dependent manner. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 93

>gnl|CDD|198196 cd09943, SH2_Nck_family, Src homology 2 (SH2) domain found in the Nck family

 Score = 61.4 bits (149), Expect = 8e-12
 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 5/91 (5%)

Query: 286 NSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTE 345
             WY+G +TR +A+ +L      G FL+RDS +  G+Y + +K   +  H+   K+    
Sbjct: 1   QPWYYGRITRHQAETLLNEHGHEGDFLIRDSESNPGDYSVSLKAPGRNKHF---KVQV-- 55

Query: 346 QQTCYKIGDKTFSDLPSLLAFYKVHYLDTSP 376
               Y IG + F  +  L+  YK   + TS 
Sbjct: 56  VDNVYCIGQRKFHTMDELVEHYKKAPIFTSE 86

Nck proteins are adaptors that modulate actin cytoskeleton dynamics by linking proline-rich effector molecules to tyrosine kinases or phosphorylated signaling intermediates. There are two members known in this family: Nck1 (Nckalpha) and Nck2 (Nckbeta and Growth factor receptor-bound protein 4 (Grb4)). They are characterized by having 3 SH3 domains and a C-terminal SH2 domain. Nck1 and Nck2 have overlapping functions as determined by gene knockouts. Both bind receptor tyrosine kinases and other tyrosine-phosphorylated proteins through their SH2 domains. In addition they also bind distinct targets. Neuronal signaling proteins: EphrinB1, EphrinB2, and Disabled-1 (Dab-1) all bind to Nck-2 exclusively. And in the case of PDGFR, Tyr(P)751 binds to Nck1 while Tyr(P)1009 binds to Nck2. Nck1 and Nck2 have a role in the infection process of enteropathogenic Escherichia coli (EPEC). Their SH3 domains are involved in recruiting and activating the N-WASP/Arp2/3 complex inducing actin polymerization resulting in the production of pedestals, dynamic bacteria-presenting protrusions of the plasma membrane. A similar thing occurs in the vaccinia virus where motile plasma membrane projections are formed beneath the virus. Recently it has been shown that the SH2 domains of both Nck1 and Nck2 bind the G-protein coupled receptor kinase-interacting protein 1 (GIT1) in a phosphorylation-dependent manner. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 93

>gnl|CDD|212701 cd11767, SH3_Nck_3, Third Src Homology 3 domain of Nck adaptor proteins

 Score = 59.2 bits (144), Expect = 1e-11
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSK--DEEHWWTAQNISGEVGSIPVPYVQ 164
            V+A Y F G + ++L F+K + L ++ K  D+  WW A+N  G  G +P  YV+
Sbjct: 1   VVVALYPFTGENDEELSFEKGERLEIIEKPEDDPDWWKARNALGTTGLVPRNYVE 55

This group contains the third SH3 domain of Nck, the first SH3 domain of Caenorhabditis elegans Ced-2 (Cell death abnormality protein 2), and similar domains. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The third SH3 domain of Nck appears to prefer ligands with a PxAPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. Ced-2 is a cell corpse engulfment protein that interacts with Ced-5 in a pathway that regulates the activation of Ced-10, a Rac small GTPase. Length = 56

>gnl|CDD|212701 cd11767, SH3_Nck_3, Third Src Homology 3 domain of Nck adaptor proteins

 Score = 59.2 bits (144), Expect = 1e-11
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSK--DEEHWWTAQNISGEVGSIPVPYVQ 439
            V+A Y F G + ++L F+K + L ++ K  D+  WW A+N  G  G +P  YV+
Sbjct: 1   VVVALYPFTGENDEELSFEKGERLEIIEKPEDDPDWWKARNALGTTGLVPRNYVE 55

This group contains the third SH3 domain of Nck, the first SH3 domain of Caenorhabditis elegans Ced-2 (Cell death abnormality protein 2), and similar domains. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The third SH3 domain of Nck appears to prefer ligands with a PxAPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. Ced-2 is a cell corpse engulfment protein that interacts with Ced-5 in a pathway that regulates the activation of Ced-10, a Rac small GTPase. Length = 56

>gnl|CDD|198190 cd09937, SH2_csk_like, Src homology 2 (SH2) domain found in Carboxyl-Terminal Src Kinase (Csk)

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 13/85 (15%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII----NKITN 68
          W+ G ++R+EA+  LL   ++G FLVR+S    G+Y LCV    KV HY +     K+T 
Sbjct: 5  WFHGKISREEAER-LLQPPEDGLFLVRESTNYPGDYTLCVSFEGKVEHYRVIYRNGKLTI 63

Query: 69 TEQQTCYKIGDKTFSDLPSLLAFYK 93
           E++         F +L  L+  Y 
Sbjct: 64 DEEE--------YFENLIQLVEHYT 80

Both the C-terminal Src kinase (CSK) and CSK-homologous kinase (CHK) are members of the CSK-family of protein tyrosine kinases. These proteins suppress activity of Src-family kinases (SFK) by selectively phosphorylating the conserved C-terminal tail regulatory tyrosine by a similar mechanism. CHK is also capable of inhibiting SFKs by a non-catalytic mechanism that involves binding of CHK to SFKs to form stable protein complexes. The unphosphorylated form of SFKs is inhibited by CSK and CHK by a two-step mechanism. The first step involves the formation of a complex of SFKs with CSK/CHK with the SFKs in the complex are inactive. The second step, involves the phosphorylation of the C-terminal tail tyrosine of SFKs, which then dissociates and adopt an inactive conformation. The structural basis of how the phosphorylated SFKs dissociate from CSK/CHK to adopt the inactive conformation is not known. The inactive conformation of SFKs is stabilized by two intramolecular inhibitory interactions: (a) the pYT:SH2 interaction in which the phosphorylated C-terminal tail tyrosine (YT) binds to the SH2 domain, and (b) the linker:SH3 interaction of which the SH2-kinase domain linker binds to the SH3 domain. SFKs are activated by multiple mechanisms including binding of the ligands to the SH2 and SH3 domains to displace the two inhibitory intramolecular interactions, autophosphorylation, and dephosphorylation of YT. By selective phosphorylation and the non-catalytic inhibitory mechanism CSK and CHK are able to inhibit the active forms of SFKs. CSK and CHK are regulated by phosphorylation and inter-domain interactions. They both contain SH3, SH2, and kinase domains separated by the SH3-SH2 connector and SH2 kinase linker, intervening segments separating the three domains. They lack a conserved tyrosine phosphorylation site in the kinase domain and the C-terminal tail regulatory tyrosine phosphorylation site. The CSK SH2 domain is crucial for stabilizing the kinase domain in the active conformation. A disulfide bond here regulates CSK kinase activity. The subcellular localization and activity of CSK are regulated by its SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 98

>gnl|CDD|198190 cd09937, SH2_csk_like, Src homology 2 (SH2) domain found in Carboxyl-Terminal Src Kinase (Csk)

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 13/85 (15%)

Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII----NKITN 343
           W+ G ++R+EA+  LL   ++G FLVR+S    G+Y LCV    KV HY +     K+T 
Sbjct: 5   WFHGKISREEAER-LLQPPEDGLFLVRESTNYPGDYTLCVSFEGKVEHYRVIYRNGKLTI 63

Query: 344 TEQQTCYKIGDKTFSDLPSLLAFYK 368
            E++         F +L  L+  Y 
Sbjct: 64  DEEE--------YFENLIQLVEHYT 80

Both the C-terminal Src kinase (CSK) and CSK-homologous kinase (CHK) are members of the CSK-family of protein tyrosine kinases. These proteins suppress activity of Src-family kinases (SFK) by selectively phosphorylating the conserved C-terminal tail regulatory tyrosine by a similar mechanism. CHK is also capable of inhibiting SFKs by a non-catalytic mechanism that involves binding of CHK to SFKs to form stable protein complexes. The unphosphorylated form of SFKs is inhibited by CSK and CHK by a two-step mechanism. The first step involves the formation of a complex of SFKs with CSK/CHK with the SFKs in the complex are inactive. The second step, involves the phosphorylation of the C-terminal tail tyrosine of SFKs, which then dissociates and adopt an inactive conformation. The structural basis of how the phosphorylated SFKs dissociate from CSK/CHK to adopt the inactive conformation is not known. The inactive conformation of SFKs is stabilized by two intramolecular inhibitory interactions: (a) the pYT:SH2 interaction in which the phosphorylated C-terminal tail tyrosine (YT) binds to the SH2 domain, and (b) the linker:SH3 interaction of which the SH2-kinase domain linker binds to the SH3 domain. SFKs are activated by multiple mechanisms including binding of the ligands to the SH2 and SH3 domains to displace the two inhibitory intramolecular interactions, autophosphorylation, and dephosphorylation of YT. By selective phosphorylation and the non-catalytic inhibitory mechanism CSK and CHK are able to inhibit the active forms of SFKs. CSK and CHK are regulated by phosphorylation and inter-domain interactions. They both contain SH3, SH2, and kinase domains separated by the SH3-SH2 connector and SH2 kinase linker, intervening segments separating the three domains. They lack a conserved tyrosine phosphorylation site in the kinase domain and the C-terminal tail regulatory tyrosine phosphorylation site. The CSK SH2 domain is crucial for stabilizing the kinase domain in the active conformation. A disulfide bond here regulates CSK kinase activity. The subcellular localization and activity of CSK are regulated by its SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 98

>gnl|CDD|198217 cd10354, SH2_Cterm_RasGAP, C-terminal Src homology 2 (SH2) domain found in Ras GTPase-activating protein 1 (GAP)

 Score = 57.8 bits (140), Expect = 8e-11
 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 4/80 (5%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
          W+ G ++R+EA  +L+     G+FLVR+S+   G+Y L  + N  + H+   KI  T   
Sbjct: 2  WFHGKISREEAYNMLVKVGGPGSFLVRESDNTPGDYSLSFRVNEGIKHF---KIIPTGNN 58

Query: 73 TCYKIGDKTFSDLPSLLAFY 92
            + +G + FS L  ++  Y
Sbjct: 59 Q-FMMGGRYFSSLDDVIDRY 77

RasGAP is part of the GAP1 family of GTPase-activating proteins. The protein is located in the cytoplasm and stimulates the GTPase activity of normal RAS p21, but not its oncogenic counterpart. Acting as a suppressor of RAS function, the protein enhances the weak intrinsic GTPase activity of RAS proteins resulting in RAS inactivation, thereby allowing control of cellular proliferation and differentiation. Mutations leading to changes in the binding sites of either protein are associated with basal cell carcinomas. Alternative splicing results in two isoforms. The shorter isoform which lacks the N-terminal hydrophobic region, has the same activity, and is expressed in placental tissues. In general longer isoform contains 2 SH2 domains, a SH3 domain, a pleckstrin homology (PH) domain, and a calcium-dependent phospholipid-binding C2 domain. The C-terminus contains the catalytic domain of RasGap which catalyzes the activation of Ras by hydrolyzing GTP-bound active Ras into an inactive GDP-bound form of Ras. This model contains the C-terminal SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 77

>gnl|CDD|198217 cd10354, SH2_Cterm_RasGAP, C-terminal Src homology 2 (SH2) domain found in Ras GTPase-activating protein 1 (GAP)

 Score = 57.8 bits (140), Expect = 8e-11
 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 4/80 (5%)

Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 347
           W+ G ++R+EA  +L+     G+FLVR+S+   G+Y L  + N  + H+   KI  T   
Sbjct: 2   WFHGKISREEAYNMLVKVGGPGSFLVRESDNTPGDYSLSFRVNEGIKHF---KIIPTGNN 58

Query: 348 TCYKIGDKTFSDLPSLLAFY 367
             + +G + FS L  ++  Y
Sbjct: 59  Q-FMMGGRYFSSLDDVIDRY 77

RasGAP is part of the GAP1 family of GTPase-activating proteins. The protein is located in the cytoplasm and stimulates the GTPase activity of normal RAS p21, but not its oncogenic counterpart. Acting as a suppressor of RAS function, the protein enhances the weak intrinsic GTPase activity of RAS proteins resulting in RAS inactivation, thereby allowing control of cellular proliferation and differentiation. Mutations leading to changes in the binding sites of either protein are associated with basal cell carcinomas. Alternative splicing results in two isoforms. The shorter isoform which lacks the N-terminal hydrophobic region, has the same activity, and is expressed in placental tissues. In general longer isoform contains 2 SH2 domains, a SH3 domain, a pleckstrin homology (PH) domain, and a calcium-dependent phospholipid-binding C2 domain. The C-terminus contains the catalytic domain of RasGap which catalyzes the activation of Ras by hydrolyzing GTP-bound active Ras into an inactive GDP-bound form of Ras. This model contains the C-terminal SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 77

>gnl|CDD|198233 cd10370, SH2_Src_Src42, Src homology 2 (SH2) domain found in the Src oncogene at 42A (Src42)

 Score = 58.3 bits (141), Expect = 1e-10
 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 6/84 (7%)

Query: 13 WYFGMMTRQEAQ-AILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 71
          WYFG + R EA+  +LL E ++GAFL+RDS +   +Y L V++ + V HY I ++     
Sbjct: 5  WYFGKIKRIEAEKKLLLPENEHGAFLIRDSESRHNDYSLSVRDGDTVKHYRIRQLDEGG- 63

Query: 72 QTCYKIGDK-TFSDLPSLLAFYKV 94
             + I  + TF  L  L+  Y  
Sbjct: 64 ---FFIARRTTFRTLQELVEHYSK 84

Src42 is a member of the Src non-receptor type tyrosine kinase family of proteins. The integration of receptor tyrosine kinase-induced RAS and Src42 signals by Connector eNhancer of KSR (CNK) as a two-component input is essential for RAF activation in Drosophila. Src42 is present in a wide variety of organisms including: California sea hare, pea aphid, yellow fever mosquito, honey bee, Panamanian leafcutter ant, and sea urchin. Src42 has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. Like the other members of the Src family the SH2 domain in addition to binding the target, also plays an autoinhibitory role by binding to its C-terminal tail. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 96

>gnl|CDD|198233 cd10370, SH2_Src_Src42, Src homology 2 (SH2) domain found in the Src oncogene at 42A (Src42)

 Score = 58.3 bits (141), Expect = 1e-10
 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 6/84 (7%)

Query: 288 WYFGMMTRQEAQ-AILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 346
           WYFG + R EA+  +LL E ++GAFL+RDS +   +Y L V++ + V HY I ++     
Sbjct: 5   WYFGKIKRIEAEKKLLLPENEHGAFLIRDSESRHNDYSLSVRDGDTVKHYRIRQLDEGG- 63

Query: 347 QTCYKIGDK-TFSDLPSLLAFYKV 369
              + I  + TF  L  L+  Y  
Sbjct: 64  ---FFIARRTTFRTLQELVEHYSK 84

Src42 is a member of the Src non-receptor type tyrosine kinase family of proteins. The integration of receptor tyrosine kinase-induced RAS and Src42 signals by Connector eNhancer of KSR (CNK) as a two-component input is essential for RAF activation in Drosophila. Src42 is present in a wide variety of organisms including: California sea hare, pea aphid, yellow fever mosquito, honey bee, Panamanian leafcutter ant, and sea urchin. Src42 has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. Like the other members of the Src family the SH2 domain in addition to binding the target, also plays an autoinhibitory role by binding to its C-terminal tail. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 96

>gnl|CDD|198218 cd10355, SH2_DAPP1_BAM32_like, Src homology 2 domain found in dual adaptor for phosphotyrosine and 3-phosphoinositides ( DAPP1)/B lymphocyte adaptor molecule of 32 kDa (Bam32)-like proteins

 Score = 57.9 bits (140), Expect = 1e-10
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 12  SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 71
            WY G +TR  A+A+LLS   +G++L+R+SN   G + L V+  + V H+ +        
Sbjct: 7   GWYHGNLTRHAAEALLLSNGVDGSYLLRNSNEGTGLFSLSVRAKDSVKHFHV-----EYT 61

Query: 72  QTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLI 103
              +K G   F++  SL  F  V +    PLI
Sbjct: 62  GYSFKFG---FNEFSSLQDF--VKHFANQPLI 88

DAPP1/Bam32 contains a putative myristoylation site at its N-terminus, followed by a SH2 domain, and a pleckstrin homology (PH) domain at its C-terminus. DAPP1 could potentially be recruited to the cell membrane by any of these domains. Its putative myristoylation site could facilitate the interaction of DAPP1 with the lipid bilayer. Its SH2 domain may also interact with phosphotyrosine residues on membrane-associated proteins such as activated tyrosine kinase receptors. And finally its PH domain exhibits a high-affinity interaction with the PtdIns(3,4,5)P(3) PtdIns(3,4)P(2) second messengers produced at the cell membrane following the activation of PI 3-kinases. DAPP1 is thought to interact with both tyrosine phosphorylated proteins and 3-phosphoinositides and therefore may play a role in regulating the location and/or activity of such proteins(s) in response to agonists that elevate PtdIns(3,4,5)P(3) and PtdIns(3,4)P(2). This protein is likely to play an important role in triggering signal transduction pathways that lie downstream from receptor tyrosine kinases and PI 3-kinase. It is likely that DAPP1 functions as an adaptor to recruit other proteins to the plasma membrane in response to extracellular signals. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 92

>gnl|CDD|198218 cd10355, SH2_DAPP1_BAM32_like, Src homology 2 domain found in dual adaptor for phosphotyrosine and 3-phosphoinositides ( DAPP1)/B lymphocyte adaptor molecule of 32 kDa (Bam32)-like proteins

 Score = 57.9 bits (140), Expect = 1e-10
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 287 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 346
            WY G +TR  A+A+LLS   +G++L+R+SN   G + L V+  + V H+ +        
Sbjct: 7   GWYHGNLTRHAAEALLLSNGVDGSYLLRNSNEGTGLFSLSVRAKDSVKHFHV-----EYT 61

Query: 347 QTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLI 378
              +K G   F++  SL  F  V +    PLI
Sbjct: 62  GYSFKFG---FNEFSSLQDF--VKHFANQPLI 88

DAPP1/Bam32 contains a putative myristoylation site at its N-terminus, followed by a SH2 domain, and a pleckstrin homology (PH) domain at its C-terminus. DAPP1 could potentially be recruited to the cell membrane by any of these domains. Its putative myristoylation site could facilitate the interaction of DAPP1 with the lipid bilayer. Its SH2 domain may also interact with phosphotyrosine residues on membrane-associated proteins such as activated tyrosine kinase receptors. And finally its PH domain exhibits a high-affinity interaction with the PtdIns(3,4,5)P(3) PtdIns(3,4)P(2) second messengers produced at the cell membrane following the activation of PI 3-kinases. DAPP1 is thought to interact with both tyrosine phosphorylated proteins and 3-phosphoinositides and therefore may play a role in regulating the location and/or activity of such proteins(s) in response to agonists that elevate PtdIns(3,4,5)P(3) and PtdIns(3,4)P(2). This protein is likely to play an important role in triggering signal transduction pathways that lie downstream from receptor tyrosine kinases and PI 3-kinase. It is likely that DAPP1 functions as an adaptor to recruit other proteins to the plasma membrane in response to extracellular signals. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 92

>gnl|CDD|198228 cd10365, SH2_Src_Src, Src homology 2 (SH2) domain found in tyrosine kinase sarcoma (Src)

 Score = 56.6 bits (136), Expect = 4e-10
 Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 9/89 (10%)

Query: 13 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 66
          WYFG +TR+E++ +LL+ E   G FLVR+S T  G Y L V   +N K   V HY I K+
Sbjct: 5  WYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 64

Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
             +    Y      F+ L  L+A+Y  H
Sbjct: 65 ---DSGGFYITSRTQFNSLQQLVAYYSKH 90

Src is a member of the Src non-receptor type tyrosine kinase family of proteins. Src is thought to play a role in the regulation of embryonic development and cell growth. Members here include v-Src and c-Src. v-Src lacks the C-terminal inhibitory phosphorylation site and is therefore constitutively active as opposed to normal cellular src (c-Src) which is only activated under certain circumstances where it is required (e.g. growth factor signaling). v-Src is an oncogene whereas c-Src is a proto-oncogene. c-Src consists of three domains, an N-terminal SH3 domain, a central SH2 domain and a tyrosine kinase domain. The SH2 and SH3 domains work together in the auto-inhibition of the kinase domain. The phosphorylation of an inhibitory tyrosine near the c-terminus of the protein produces a binding site for the SH2 domain which then facilitates binding of the SH3 domain to a polyproline site within the linker between the SH2 domain and the kinase domain. Binding of the SH3 domain inactivates the enzyme. This allows for multiple mechanisms for c-Src activation: dephosphorylation of the C-terminal tyrosine by a protein tyrosine phosphatase, binding of the SH2 domain by a competitive phospho-tyrosine residue, or competitive binding of a polyproline binding site to the SH3 domain. Unlike most other Src members Src lacks cysteine residues in the SH4 domain that undergo palmitylation. Serine and threonine phosphorylation sites have also been identified in the unique domains of Src and are believed to modulate protein-protein interactions or regulate catalytic activity. Alternatively spliced forms of Src, which contain 6- or 11-amino acid insertions in the SH3 domain, are expressed in CNS neurons. c-Src has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198228 cd10365, SH2_Src_Src, Src homology 2 (SH2) domain found in tyrosine kinase sarcoma (Src)

 Score = 56.6 bits (136), Expect = 4e-10
 Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 9/89 (10%)

Query: 288 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 341
           WYFG +TR+E++ +LL+ E   G FLVR+S T  G Y L V   +N K   V HY I K+
Sbjct: 5   WYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 64

Query: 342 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 370
              +    Y      F+ L  L+A+Y  H
Sbjct: 65  ---DSGGFYITSRTQFNSLQQLVAYYSKH 90

Src is a member of the Src non-receptor type tyrosine kinase family of proteins. Src is thought to play a role in the regulation of embryonic development and cell growth. Members here include v-Src and c-Src. v-Src lacks the C-terminal inhibitory phosphorylation site and is therefore constitutively active as opposed to normal cellular src (c-Src) which is only activated under certain circumstances where it is required (e.g. growth factor signaling). v-Src is an oncogene whereas c-Src is a proto-oncogene. c-Src consists of three domains, an N-terminal SH3 domain, a central SH2 domain and a tyrosine kinase domain. The SH2 and SH3 domains work together in the auto-inhibition of the kinase domain. The phosphorylation of an inhibitory tyrosine near the c-terminus of the protein produces a binding site for the SH2 domain which then facilitates binding of the SH3 domain to a polyproline site within the linker between the SH2 domain and the kinase domain. Binding of the SH3 domain inactivates the enzyme. This allows for multiple mechanisms for c-Src activation: dephosphorylation of the C-terminal tyrosine by a protein tyrosine phosphatase, binding of the SH2 domain by a competitive phospho-tyrosine residue, or competitive binding of a polyproline binding site to the SH3 domain. Unlike most other Src members Src lacks cysteine residues in the SH4 domain that undergo palmitylation. Serine and threonine phosphorylation sites have also been identified in the unique domains of Src and are believed to modulate protein-protein interactions or regulate catalytic activity. Alternatively spliced forms of Src, which contain 6- or 11-amino acid insertions in the SH3 domain, are expressed in CNS neurons. c-Src has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198197 cd09944, SH2_Grb7_family, Src homology 2 (SH2) domain found in the growth factor receptor bound, subclass 7 (Grb7) proteins

 Score = 56.7 bits (137), Expect = 5e-10
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 6/91 (6%)

Query: 8  HDRNSWYFGMMTRQEAQAIL--LSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
          H    W+ G ++R EA  ++      D G FLVR+S +  G +VL +K   K+ HY I  
Sbjct: 2  HRSQPWFHGGISRDEAARLIRQQGLVD-GVFLVRESQSNPGAFVLSLKHGQKIKHYQIIP 60

Query: 66 ITNTEQQTCYKI--GDKTFSDLPSLLAFYKV 94
          I + E Q  + +  G   F DL  L+ FY++
Sbjct: 61 IED-EGQWYFTLDDGVTKFYDLLQLVEFYQL 90

The Grb family binds to the epidermal growth factor receptor (EGFR, erbB1) via their SH2 domains. There are 3 members of the Grb7 family of proteins: Grb7, Grb10, and Grb14. They are composed of an N-terminal Proline-rich domain, a Ras Associating-like (RA) domain, a Pleckstrin Homology (PH) domain, a phosphotyrosine interaction region (PIR, BPS) and a C-terminal SH2 domain. The SH2 domains of Grb7, Grb10 and Grb14 preferentially bind to a different RTK. Grb7 binds strongly to the erbB2 receptor, unlike Grb10 and Grb14 which bind weakly to it. Grb14 binds to Fibroblast Growth Factor Receptor (FGFR). Grb10 has been shown to interact with many different proteins, including the insulin and IGF1 receptors, platelet-derived growth factor (PDGF) receptor-beta, Ret, Kit, Raf1 and MEK1, and Nedd4. Grb7 family proteins are phosphorylated on serine/threonine as well as tyrosine residues. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 108

>gnl|CDD|198197 cd09944, SH2_Grb7_family, Src homology 2 (SH2) domain found in the growth factor receptor bound, subclass 7 (Grb7) proteins

 Score = 56.7 bits (137), Expect = 5e-10
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 6/91 (6%)

Query: 283 HDRNSWYFGMMTRQEAQAIL--LSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 340
           H    W+ G ++R EA  ++      D G FLVR+S +  G +VL +K   K+ HY I  
Sbjct: 2   HRSQPWFHGGISRDEAARLIRQQGLVD-GVFLVRESQSNPGAFVLSLKHGQKIKHYQIIP 60

Query: 341 ITNTEQQTCYKI--GDKTFSDLPSLLAFYKV 369
           I + E Q  + +  G   F DL  L+ FY++
Sbjct: 61  IED-EGQWYFTLDDGVTKFYDLLQLVEFYQL 90

The Grb family binds to the epidermal growth factor receptor (EGFR, erbB1) via their SH2 domains. There are 3 members of the Grb7 family of proteins: Grb7, Grb10, and Grb14. They are composed of an N-terminal Proline-rich domain, a Ras Associating-like (RA) domain, a Pleckstrin Homology (PH) domain, a phosphotyrosine interaction region (PIR, BPS) and a C-terminal SH2 domain. The SH2 domains of Grb7, Grb10 and Grb14 preferentially bind to a different RTK. Grb7 binds strongly to the erbB2 receptor, unlike Grb10 and Grb14 which bind weakly to it. Grb14 binds to Fibroblast Growth Factor Receptor (FGFR). Grb10 has been shown to interact with many different proteins, including the insulin and IGF1 receptors, platelet-derived growth factor (PDGF) receptor-beta, Ret, Kit, Raf1 and MEK1, and Nedd4. Grb7 family proteins are phosphorylated on serine/threonine as well as tyrosine residues. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 108

>gnl|CDD|198189 cd09935, SH2_ABL, Src homology 2 (SH2) domain found in Abelson murine lymphosarcoma virus (ABL) proteins

 Score = 55.9 bits (135), Expect = 6e-10
 Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 4/87 (4%)

Query: 9  DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 68
          +++SWY G ++R  A+  LLS   NG+FLVR+S +  G Y + ++ + +V HY I++   
Sbjct: 1  EKHSWYHGPISRNAAE-YLLSSGINGSFLVRESESSPGQYSISLRYDGRVYHYRISE--- 56

Query: 69 TEQQTCYKIGDKTFSDLPSLLAFYKVH 95
                Y   +  F+ L  L+  +  +
Sbjct: 57 DSDGKVYVTQEHRFNTLAELVHHHSKN 83

ABL-family proteins are highly conserved tyrosine kinases. Each ABL protein contains an SH3-SH2-TK (Src homology 3-Src homology 2-tyrosine kinase) domain cassette, which confers autoregulated kinase activity and is common among nonreceptor tyrosine kinases. Several types of posttranslational modifications control ABL catalytic activity, subcellular localization, and stability, with consequences for both cytoplasmic and nuclear ABL functions. Binding partners provide additional regulation of ABL catalytic activity, substrate specificity, and downstream signaling. By combining this cassette with actin-binding and -bundling domain, ABL proteins are capable of connecting phosphoregulation with actin-filament reorganization. Vertebrate paralogs, ABL1 and ABL2, have evolved to perform specialized functions. ABL1 includes nuclear localization signals and a DNA binding domain which is used to mediate DNA damage-repair functions, while ABL2 has additional binding capacity for actin and for microtubules to enhance its cytoskeletal remodeling functions. SH2 is involved in several autoinhibitory mechanism that constrain the enzymatic activity of the ABL-family kinases. In one mechanism SH2 and SH3 cradle the kinase domain while a cap sequence stabilizes the inactive conformation resulting in a locked inactive state. Another involves phosphatidylinositol 4,5-bisphosphate (PIP2) which binds the SH2 domain through residues normally required for phosphotyrosine binding in the linker segment between the SH2 and kinase domains. The SH2 domain contributes to ABL catalytic activity and target site specificity. It is thought that the ABL catalytic site and SH2 pocket have coevolved to recognize the same sequences. Recent work now supports a hierarchical processivity model in which the substrate target site most compatible with ABL kinase domain preferences is phosphorylated with greatest efficiency. If this site is compatible with the ABL SH2 domain specificity, it will then reposition and dock in the SH2 pocket. This mechanism also explains how ABL kinases phosphorylates poor targets on the same substrate if they are properly positioned and how relatively poor substrate proteins might be recruited to ABL through a complex with strong substrates that can also dock with the SH2 pocket. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 94

>gnl|CDD|198189 cd09935, SH2_ABL, Src homology 2 (SH2) domain found in Abelson murine lymphosarcoma virus (ABL) proteins

 Score = 55.9 bits (135), Expect = 6e-10
 Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 4/87 (4%)

Query: 284 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 343
           +++SWY G ++R  A+  LLS   NG+FLVR+S +  G Y + ++ + +V HY I++   
Sbjct: 1   EKHSWYHGPISRNAAE-YLLSSGINGSFLVRESESSPGQYSISLRYDGRVYHYRISE--- 56

Query: 344 TEQQTCYKIGDKTFSDLPSLLAFYKVH 370
                 Y   +  F+ L  L+  +  +
Sbjct: 57  DSDGKVYVTQEHRFNTLAELVHHHSKN 83

ABL-family proteins are highly conserved tyrosine kinases. Each ABL protein contains an SH3-SH2-TK (Src homology 3-Src homology 2-tyrosine kinase) domain cassette, which confers autoregulated kinase activity and is common among nonreceptor tyrosine kinases. Several types of posttranslational modifications control ABL catalytic activity, subcellular localization, and stability, with consequences for both cytoplasmic and nuclear ABL functions. Binding partners provide additional regulation of ABL catalytic activity, substrate specificity, and downstream signaling. By combining this cassette with actin-binding and -bundling domain, ABL proteins are capable of connecting phosphoregulation with actin-filament reorganization. Vertebrate paralogs, ABL1 and ABL2, have evolved to perform specialized functions. ABL1 includes nuclear localization signals and a DNA binding domain which is used to mediate DNA damage-repair functions, while ABL2 has additional binding capacity for actin and for microtubules to enhance its cytoskeletal remodeling functions. SH2 is involved in several autoinhibitory mechanism that constrain the enzymatic activity of the ABL-family kinases. In one mechanism SH2 and SH3 cradle the kinase domain while a cap sequence stabilizes the inactive conformation resulting in a locked inactive state. Another involves phosphatidylinositol 4,5-bisphosphate (PIP2) which binds the SH2 domain through residues normally required for phosphotyrosine binding in the linker segment between the SH2 and kinase domains. The SH2 domain contributes to ABL catalytic activity and target site specificity. It is thought that the ABL catalytic site and SH2 pocket have coevolved to recognize the same sequences. Recent work now supports a hierarchical processivity model in which the substrate target site most compatible with ABL kinase domain preferences is phosphorylated with greatest efficiency. If this site is compatible with the ABL SH2 domain specificity, it will then reposition and dock in the SH2 pocket. This mechanism also explains how ABL kinases phosphorylates poor targets on the same substrate if they are properly positioned and how relatively poor substrate proteins might be recruited to ABL through a complex with strong substrates that can also dock with the SH2 pocket. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 94

>gnl|CDD|212783 cd11849, SH3_SPIN90, Src homology 3 domain of SH3 protein interacting with Nck, 90 kDa (SPIN90)

 Score = 54.6 bits (132), Expect = 6e-10
 Identities = 18/50 (36%), Positives = 28/50 (56%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           A YDF   +P+ L F + +  +++ +   HWW   N SGE G +P  YV+
Sbjct: 4   ALYDFKSAEPNTLSFSEGETFLLLERSNAHWWLVTNHSGETGYVPANYVK 53

SPIN90 is also called NCK interacting protein with SH3 domain (NCKIPSD), Dia-interacting protein (DIP), 54 kDa vimentin-interacting protein (VIP54), or WASP-interacting SH3-domain protein (WISH). It is an F-actin binding protein that regulates actin polymerization and endocytosis. It associates with the Arp2/3 complex near actin filaments and determines filament localization at the leading edge of lamellipodia. SPIN90 is expressed in the early stages of neuronal differentiation and plays a role in regulating growth cone dynamics and neurite outgrowth. It also interacts with IRSp53 and regulates cell motility by playing a role in the formation of membrane protrusions. SPIN90 contains an N-terminal SH3 domain, a proline-rich domain, and a C-terminal VCA (verprolin-homology and cofilin-like acidic) domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212783 cd11849, SH3_SPIN90, Src homology 3 domain of SH3 protein interacting with Nck, 90 kDa (SPIN90)

 Score = 54.6 bits (132), Expect = 6e-10
 Identities = 18/50 (36%), Positives = 28/50 (56%)

Query: 390 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
           A YDF   +P+ L F + +  +++ +   HWW   N SGE G +P  YV+
Sbjct: 4   ALYDFKSAEPNTLSFSEGETFLLLERSNAHWWLVTNHSGETGYVPANYVK 53

SPIN90 is also called NCK interacting protein with SH3 domain (NCKIPSD), Dia-interacting protein (DIP), 54 kDa vimentin-interacting protein (VIP54), or WASP-interacting SH3-domain protein (WISH). It is an F-actin binding protein that regulates actin polymerization and endocytosis. It associates with the Arp2/3 complex near actin filaments and determines filament localization at the leading edge of lamellipodia. SPIN90 is expressed in the early stages of neuronal differentiation and plays a role in regulating growth cone dynamics and neurite outgrowth. It also interacts with IRSp53 and regulates cell motility by playing a role in the formation of membrane protrusions. SPIN90 contains an N-terminal SH3 domain, a proline-rich domain, and a C-terminal VCA (verprolin-homology and cofilin-like acidic) domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|198224 cd10361, SH2_Fps_family, Src homology 2 (SH2) domain found in feline sarcoma, Fujinami poultry sarcoma, and fes-related (Fes/Fps/Fer) proteins

 Score = 55.6 bits (135), Expect = 7e-10
 Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 10/93 (10%)

Query: 6  DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDS---NTILGNYVLCVKENNKVSHYI 62
             +   +Y G++ R++A+ +L   K++G FLVR +          VL V+ + K+ H++
Sbjct: 1  KDLENEPYYHGLLPREDAEELL---KNDGDFLVRKTEPKGGGKRKLVLSVRWDGKIRHFV 57

Query: 63 INKITNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
          IN+  +  +   Y I  K+F  +  L+ +Y+  
Sbjct: 58 INR-DDGGK---YYIEGKSFKSISELINYYQKT 86

The Fps family consists of members Fps/Fes and Fer/Flk/Tyk3. They are cytoplasmic protein-tyrosine kinases implicated in signaling downstream from cytokines, growth factors and immune receptors. Fes/Fps/Fer contains three coiled-coil regions, an SH2 (Src-homology-2) and a TK (tyrosine kinase catalytic) domain signature. Members here include: Fps/Fes, Fer, Kin-31, and In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 90

>gnl|CDD|198224 cd10361, SH2_Fps_family, Src homology 2 (SH2) domain found in feline sarcoma, Fujinami poultry sarcoma, and fes-related (Fes/Fps/Fer) proteins

 Score = 55.6 bits (135), Expect = 7e-10
 Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 10/93 (10%)

Query: 281 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDS---NTILGNYVLCVKENNKVSHYI 337
              +   +Y G++ R++A+ +L   K++G FLVR +          VL V+ + K+ H++
Sbjct: 1   KDLENEPYYHGLLPREDAEELL---KNDGDFLVRKTEPKGGGKRKLVLSVRWDGKIRHFV 57

Query: 338 INKITNTEQQTCYKIGDKTFSDLPSLLAFYKVH 370
           IN+  +  +   Y I  K+F  +  L+ +Y+  
Sbjct: 58  INR-DDGGK---YYIEGKSFKSISELINYYQKT 86

The Fps family consists of members Fps/Fes and Fer/Flk/Tyk3. They are cytoplasmic protein-tyrosine kinases implicated in signaling downstream from cytokines, growth factors and immune receptors. Fes/Fps/Fer contains three coiled-coil regions, an SH2 (Src-homology-2) and a TK (tyrosine kinase catalytic) domain signature. Members here include: Fps/Fes, Fer, Kin-31, and In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 90

>gnl|CDD|212739 cd11805, SH3_GRB2_like_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 54.2 bits (131), Expect = 7e-10
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           +V A YDF+  +P +L F++ DI+ V+   +  WW  + + G VG  P  YVQ 
Sbjct: 1   RVQALYDFNPQEPGELEFRRGDIITVLDSSDPDWWKGE-LRGRVGIFPANYVQP 53

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The C-terminal SH3 domains (SH3c) of GRB2 and GRAP2 have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212739 cd11805, SH3_GRB2_like_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 54.2 bits (131), Expect = 7e-10
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 440
           +V A YDF+  +P +L F++ DI+ V+   +  WW  + + G VG  P  YVQ 
Sbjct: 1   RVQALYDFNPQEPGELEFRRGDIITVLDSSDPDWWKGE-LRGRVGIFPANYVQP 53

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The C-terminal SH3 domains (SH3c) of GRB2 and GRAP2 have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|198206 cd10343, SH2_SHIP, Src homology 2 (SH2) domain found in SH2-containing inositol-5'-phosphatase (SHIP) and SLAM-associated protein (SAP)

 Score = 55.5 bits (134), Expect = 9e-10
 Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 71
           WY G +TR +A+ +L     +G+FLVRDS ++ G Y LCV   N V  Y I  + N E 
Sbjct: 4  PWYHGNITRSKAEELLSKAGKDGSFLVRDSESVSGAYALCVLYQNCVHTYRI--LPNAED 61

Query: 72 ----QTCYKIGDKTFSDLPSLLAFYK 93
              Q    +  + F+ LP L+ FY+
Sbjct: 62 KLSVQASEGVPVRFFTTLPELIEFYQ 87

The SH2-containing inositol-5'-phosphatase, SHIP (also called SHIP1/SHIP1a), is a hematopoietic-restricted phosphatidylinositide phosphatase that translocates to the plasma membrane after extracellular stimulation and hydrolyzes the phosphatidylinositol-3-kinase (PI3K)-generated second messenger PI-3,4,5-P3 (PIP3) to PI-3,4-P2. As a result, SHIP dampens down PIP3 mediated signaling and represses the proliferation, differentiation, survival, activation, and migration of hematopoietic cells. PIP3 recruits lipid-binding pleckstrin homology(PH) domain-containing proteins to the inner wall of the plasma membrane and activates them. PH domain-containing downstream effectors include the survival/proliferation enhancing serine/threonine kinase, Akt (protein kinase B), the tyrosine kinase, Btk, the regulator of protein translation, S6K, and the Rac and cdc42 guanine nucleotide exchange factor, Vav. SHIP is believed to act as a tumor suppressor during leukemogenesis and lymphomagenesis, and may play a role in activating the immune system to combat cancer. SHIP contains an N-terminal SH2 domain, a centrally located phosphatase domain that specifically hydrolyzes the 5'-phosphate from PIP3, PI-4,5-P2 and inositol-1,3,4,5- tetrakisphosphate (IP4), a C2 domain, that is an allosteric activating site when bound by SHIP's enzymatic product, PI-3,4-P2; 2 NPXY motifs that bind proteins with a phosphotyrosine binding (Shc, Dok 1, Dok 2) or an SH2 (p85a, SHIP2) domain; and a proline-rich domain consisting of four PxxP motifs that bind a subset of SH3-containing proteins including Grb2, Src, Lyn, Hck, Abl, PLCg1, and PIAS1. The SH2 domain of SHIP binds to the tyrosine phosphorylated forms of Shc, SHP-2, Doks, Gabs, CD150, platelet-endothelial cell adhesion molecule, Cas, c-Cbl, immunoreceptor tyrosine-based inhibitory motifs (ITIMs), and immunoreceptor tyrosine-based activation motifs (ITAMs). The X-linked lymphoproliferative syndrome (XLP) gene encodes SAP (also called SH2D1A/DSHP) a protein that consists of a 5 residue N-terminus, a single SH2 domain, and a short 25 residue C-terminal tail. XLP is characterized by an extreme sensitivity to Epstein-Barr virus. Both T and natural killer (NK) cell dysfunctions have been seen in XLP patients. SAP binds the cytoplasmic tail of Signaling lymphocytic activation molecule (SLAM), 2B4, Ly-9, and CD84. SAP is believed to function as a signaling inhibitor, by blocking or regulating binding of other signaling proteins. SAP and the SAP-like protein EAT-2 recognize the sequence motif TIpYXX(V/I), which is found in the cytoplasmic domains of a restricted number of T, B, and NK cell surface receptors and are proposed to be natural inhibitors or regulators of the physiological role of a small family of receptors on the surface of these cells. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|198206 cd10343, SH2_SHIP, Src homology 2 (SH2) domain found in SH2-containing inositol-5'-phosphatase (SHIP) and SLAM-associated protein (SAP)

 Score = 55.5 bits (134), Expect = 9e-10
 Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 287 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 346
            WY G +TR +A+ +L     +G+FLVRDS ++ G Y LCV   N V  Y I  + N E 
Sbjct: 4   PWYHGNITRSKAEELLSKAGKDGSFLVRDSESVSGAYALCVLYQNCVHTYRI--LPNAED 61

Query: 347 ----QTCYKIGDKTFSDLPSLLAFYK 368
               Q    +  + F+ LP L+ FY+
Sbjct: 62  KLSVQASEGVPVRFFTTLPELIEFYQ 87

The SH2-containing inositol-5'-phosphatase, SHIP (also called SHIP1/SHIP1a), is a hematopoietic-restricted phosphatidylinositide phosphatase that translocates to the plasma membrane after extracellular stimulation and hydrolyzes the phosphatidylinositol-3-kinase (PI3K)-generated second messenger PI-3,4,5-P3 (PIP3) to PI-3,4-P2. As a result, SHIP dampens down PIP3 mediated signaling and represses the proliferation, differentiation, survival, activation, and migration of hematopoietic cells. PIP3 recruits lipid-binding pleckstrin homology(PH) domain-containing proteins to the inner wall of the plasma membrane and activates them. PH domain-containing downstream effectors include the survival/proliferation enhancing serine/threonine kinase, Akt (protein kinase B), the tyrosine kinase, Btk, the regulator of protein translation, S6K, and the Rac and cdc42 guanine nucleotide exchange factor, Vav. SHIP is believed to act as a tumor suppressor during leukemogenesis and lymphomagenesis, and may play a role in activating the immune system to combat cancer. SHIP contains an N-terminal SH2 domain, a centrally located phosphatase domain that specifically hydrolyzes the 5'-phosphate from PIP3, PI-4,5-P2 and inositol-1,3,4,5- tetrakisphosphate (IP4), a C2 domain, that is an allosteric activating site when bound by SHIP's enzymatic product, PI-3,4-P2; 2 NPXY motifs that bind proteins with a phosphotyrosine binding (Shc, Dok 1, Dok 2) or an SH2 (p85a, SHIP2) domain; and a proline-rich domain consisting of four PxxP motifs that bind a subset of SH3-containing proteins including Grb2, Src, Lyn, Hck, Abl, PLCg1, and PIAS1. The SH2 domain of SHIP binds to the tyrosine phosphorylated forms of Shc, SHP-2, Doks, Gabs, CD150, platelet-endothelial cell adhesion molecule, Cas, c-Cbl, immunoreceptor tyrosine-based inhibitory motifs (ITIMs), and immunoreceptor tyrosine-based activation motifs (ITAMs). The X-linked lymphoproliferative syndrome (XLP) gene encodes SAP (also called SH2D1A/DSHP) a protein that consists of a 5 residue N-terminus, a single SH2 domain, and a short 25 residue C-terminal tail. XLP is characterized by an extreme sensitivity to Epstein-Barr virus. Both T and natural killer (NK) cell dysfunctions have been seen in XLP patients. SAP binds the cytoplasmic tail of Signaling lymphocytic activation molecule (SLAM), 2B4, Ly-9, and CD84. SAP is believed to function as a signaling inhibitor, by blocking or regulating binding of other signaling proteins. SAP and the SAP-like protein EAT-2 recognize the sequence motif TIpYXX(V/I), which is found in the cytoplasmic domains of a restricted number of T, B, and NK cell surface receptors and are proposed to be natural inhibitors or regulators of the physiological role of a small family of receptors on the surface of these cells. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|212774 cd11840, SH3_Intersectin_5, Fifth Src homology 3 domain (or SH3E) of Intersectin

 Score = 53.2 bits (128), Expect = 2e-09
 Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           +VIA + +   + D+L F+K DI+ V+SKD+  WW  + ++G+ G  P  YV+
Sbjct: 1   QVIALFPYTAQNEDELSFQKGDIINVLSKDDPDWWRGE-LNGQTGLFPSNYVE 52

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212774 cd11840, SH3_Intersectin_5, Fifth Src homology 3 domain (or SH3E) of Intersectin

 Score = 53.2 bits (128), Expect = 2e-09
 Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
           +VIA + +   + D+L F+K DI+ V+SKD+  WW  + ++G+ G  P  YV+
Sbjct: 1   QVIALFPYTAQNEDELSFQKGDIINVLSKDDPDWWRGE-LNGQTGLFPSNYVE 52

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212779 cd11845, SH3_Src_like, Src homology 3 domain of Src kinase-like Protein Tyrosine Kinases

 Score = 53.0 bits (128), Expect = 2e-09
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPY 162
            +A YD++    DDL FKK D L ++   +  WW A+++S G+ G IP  Y
Sbjct: 2   YVALYDYEARTDDDLSFKKGDRLQILDDSDGDWWLARHLSTGKEGYIPSNY 52

Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, Yes, and Brk. Src (or c-Src) proteins are cytoplasmic (or non-receptor) PTKs which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). However, Brk lacks the N-terminal myristoylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells, and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, Lyn, and Brk show a limited expression pattern. This subfamily also includes Drosophila Src42A, Src oncogene at 42A (also known as Dsrc41) which accumulates at sites of cell-cell or cell-matrix adhesion, and participates in Drosphila development and wound healing. It has been shown to promote tube elongation in the tracheal system, is essential for proper cell-cell matching during dorsal closure, and regulates cell-cell contacts in developing Drosophila eyes. The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212779 cd11845, SH3_Src_like, Src homology 3 domain of Src kinase-like Protein Tyrosine Kinases

 Score = 53.0 bits (128), Expect = 2e-09
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPY 437
            +A YD++    DDL FKK D L ++   +  WW A+++S G+ G IP  Y
Sbjct: 2   YVALYDYEARTDDDLSFKKGDRLQILDDSDGDWWLARHLSTGKEGYIPSNY 52

Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, Yes, and Brk. Src (or c-Src) proteins are cytoplasmic (or non-receptor) PTKs which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). However, Brk lacks the N-terminal myristoylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells, and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, Lyn, and Brk show a limited expression pattern. This subfamily also includes Drosophila Src42A, Src oncogene at 42A (also known as Dsrc41) which accumulates at sites of cell-cell or cell-matrix adhesion, and participates in Drosphila development and wound healing. It has been shown to promote tube elongation in the tracheal system, is essential for proper cell-cell matching during dorsal closure, and regulates cell-cell contacts in developing Drosophila eyes. The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|199829 cd10341, SH2_N-SH2_PLC_gamma_like, N-terminal Src homology 2 (N-SH2) domain in Phospholipase C gamma

 Score = 54.3 bits (131), Expect = 3e-09
 Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 4/97 (4%)

Query: 8   HDRNSWYFGMMT--RQEAQAILLS--EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
           H    W+ G +   R EA+ +LL   E  +G FLVR+S T +G+Y L    N KV H  I
Sbjct: 1   HFTEPWFHGKLGDGRDEAEKLLLEYCEGGDGTFLVRESETFVGDYTLSFWRNGKVQHCRI 60

Query: 64  NKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTS 100
                  ++  Y   +  F  L  L+ +Y+ + L  +
Sbjct: 61  RSRQENGEKKYYLTDNLVFDSLYELIDYYRQNPLRCA 97

Phospholipase C gamma is a signaling molecule that is recruited to the C-terminal tail of the receptor upon autophosphorylation of a highly conserved tyrosine. PLCgamma is composed of a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, 2 catalytic regions of PLC domains that flank 2 tandem SH2 domains (N-SH2, C-SH2), and ending with a SH3 domain and C2 domain. N-SH2 SH2 domain-mediated interactions represent a crucial step in transmembrane signaling by receptor tyrosine kinases. SH2 domains recognize phosphotyrosine (pY) in the context of particular sequence motifs in receptor phosphorylation sites. Both N-SH2 and C-SH2 have a very similar binding affinity to pY. But in growth factor stimulated cells these domains bind to different target proteins. N-SH2 binds to pY containing sites in the C-terminal tails of tyrosine kinases and other receptors. Recently it has been shown that this interaction is mediated by phosphorylation-independent interactions between a secondary binding site found exclusively on the N-SH2 domain and a region of the FGFR1 tyrosine kinase domain. This secondary site on the SH2 cooperates with the canonical pY site to regulate selectivity in mediating a specific cellular process. C-SH2 binds to an intramolecular site on PLCgamma itself which allows it to hydrolyze phosphatidylinositol-4,5-bisphosphate into diacylglycerol and inositol triphosphate. These then activate protein kinase C and release calcium. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 99

>gnl|CDD|199829 cd10341, SH2_N-SH2_PLC_gamma_like, N-terminal Src homology 2 (N-SH2) domain in Phospholipase C gamma

 Score = 54.3 bits (131), Expect = 3e-09
 Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 4/97 (4%)

Query: 283 HDRNSWYFGMMT--RQEAQAILLS--EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 338
           H    W+ G +   R EA+ +LL   E  +G FLVR+S T +G+Y L    N KV H  I
Sbjct: 1   HFTEPWFHGKLGDGRDEAEKLLLEYCEGGDGTFLVRESETFVGDYTLSFWRNGKVQHCRI 60

Query: 339 NKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTS 375
                  ++  Y   +  F  L  L+ +Y+ + L  +
Sbjct: 61  RSRQENGEKKYYLTDNLVFDSLYELIDYYRQNPLRCA 97

Phospholipase C gamma is a signaling molecule that is recruited to the C-terminal tail of the receptor upon autophosphorylation of a highly conserved tyrosine. PLCgamma is composed of a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, 2 catalytic regions of PLC domains that flank 2 tandem SH2 domains (N-SH2, C-SH2), and ending with a SH3 domain and C2 domain. N-SH2 SH2 domain-mediated interactions represent a crucial step in transmembrane signaling by receptor tyrosine kinases. SH2 domains recognize phosphotyrosine (pY) in the context of particular sequence motifs in receptor phosphorylation sites. Both N-SH2 and C-SH2 have a very similar binding affinity to pY. But in growth factor stimulated cells these domains bind to different target proteins. N-SH2 binds to pY containing sites in the C-terminal tails of tyrosine kinases and other receptors. Recently it has been shown that this interaction is mediated by phosphorylation-independent interactions between a secondary binding site found exclusively on the N-SH2 domain and a region of the FGFR1 tyrosine kinase domain. This secondary site on the SH2 cooperates with the canonical pY site to regulate selectivity in mediating a specific cellular process. C-SH2 binds to an intramolecular site on PLCgamma itself which allows it to hydrolyze phosphatidylinositol-4,5-bisphosphate into diacylglycerol and inositol triphosphate. These then activate protein kinase C and release calcium. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 99

>gnl|CDD|198215 cd10352, SH2_a2chimerin_b2chimerin, Src homology 2 (SH2) domain found in alpha2-chimerin and beta2-chimerin proteins

 Score = 53.5 bits (129), Expect = 4e-09
 Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 4/80 (5%)

Query: 11 NSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTE 70
             Y G+++R+EA   LLS   +G++L+R+S+   G Y L ++ N KV +Y   K+    
Sbjct: 6  GREYHGLISREEA-EQLLSGASDGSYLIRESSRDDGYYTLSLRFNGKVKNY---KLYYDG 61

Query: 71 QQTCYKIGDKTFSDLPSLLA 90
          +   + +G+K F  +  L+A
Sbjct: 62 KNHYHYVGEKRFDTIHDLVA 81

Chimerins are a family of phorbol ester- and diacylglycerol-responsive GTPase-activating proteins. Alpha1-chimerin (formerly known as n-chimerin) and alpha2-chimerin are alternatively spliced products of a single gene, as are beta1- and beta2-chimerin. alpha1- and beta1-chimerin have a relatively short N-terminal region that does not encode any recognizable domains, whereas alpha2- and beta2-chimerin both include a functional SH2 domain that can bind to phosphotyrosine motifs within receptors. All of the isoforms contain a GAP domain with specificity in vitro for Rac1 and a diacylglycerol (DAG)-binding C1 domain which allows them to translocate to membranes in response to DAG signaling and anchors them in close proximity to activated Rac. Other C1 domain-containing diacylglycerol receptors including: PKC, Munc-13 proteins, phorbol ester binding scaffolding proteins involved in Ca2+-stimulated exocytosis, and RasGRPs, diacylglycerol-activated guanine-nucleotide exchange factors (GEFs) for Ras and Rap1. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 91

>gnl|CDD|198215 cd10352, SH2_a2chimerin_b2chimerin, Src homology 2 (SH2) domain found in alpha2-chimerin and beta2-chimerin proteins

 Score = 53.5 bits (129), Expect = 4e-09
 Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 4/80 (5%)

Query: 286 NSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTE 345
              Y G+++R+EA   LLS   +G++L+R+S+   G Y L ++ N KV +Y   K+    
Sbjct: 6   GREYHGLISREEA-EQLLSGASDGSYLIRESSRDDGYYTLSLRFNGKVKNY---KLYYDG 61

Query: 346 QQTCYKIGDKTFSDLPSLLA 365
           +   + +G+K F  +  L+A
Sbjct: 62  KNHYHYVGEKRFDTIHDLVA 81

Chimerins are a family of phorbol ester- and diacylglycerol-responsive GTPase-activating proteins. Alpha1-chimerin (formerly known as n-chimerin) and alpha2-chimerin are alternatively spliced products of a single gene, as are beta1- and beta2-chimerin. alpha1- and beta1-chimerin have a relatively short N-terminal region that does not encode any recognizable domains, whereas alpha2- and beta2-chimerin both include a functional SH2 domain that can bind to phosphotyrosine motifs within receptors. All of the isoforms contain a GAP domain with specificity in vitro for Rac1 and a diacylglycerol (DAG)-binding C1 domain which allows them to translocate to membranes in response to DAG signaling and anchors them in close proximity to activated Rac. Other C1 domain-containing diacylglycerol receptors including: PKC, Munc-13 proteins, phorbol ester binding scaffolding proteins involved in Ca2+-stimulated exocytosis, and RasGRPs, diacylglycerol-activated guanine-nucleotide exchange factors (GEFs) for Ras and Rap1. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 91

>gnl|CDD|212838 cd11905, SH3_Tec, Src Homology 3 domain of Tec (Tyrosine kinase expressed in hepatocellular carcinoma)

 Score = 51.4 bits (123), Expect = 1e-08
 Identities = 20/53 (37%), Positives = 32/53 (60%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
           E V+A YDF   +P DL  +  +  +++ K++ HWW A++  G+ G IP  YV
Sbjct: 1   EIVVAMYDFQPTEPHDLRLETGEEYVILEKNDVHWWKARDKYGKEGYIPSNYV 53

Tec is a cytoplasmic (or nonreceptor) tyr kinase containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. It also contains an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation, and the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. It is more widely-expressed than other Tec subfamily kinases. Tec is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Tec is a key component of T-cell receptor (TCR) signaling, and is important in TCR-stimulated proliferation, IL-2 production and phospholipase C-gamma1 activation. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212838 cd11905, SH3_Tec, Src Homology 3 domain of Tec (Tyrosine kinase expressed in hepatocellular carcinoma)

 Score = 51.4 bits (123), Expect = 1e-08
 Identities = 20/53 (37%), Positives = 32/53 (60%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 438
           E V+A YDF   +P DL  +  +  +++ K++ HWW A++  G+ G IP  YV
Sbjct: 1   EIVVAMYDFQPTEPHDLRLETGEEYVILEKNDVHWWKARDKYGKEGYIPSNYV 53

Tec is a cytoplasmic (or nonreceptor) tyr kinase containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. It also contains an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation, and the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. It is more widely-expressed than other Tec subfamily kinases. Tec is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Tec is a key component of T-cell receptor (TCR) signaling, and is important in TCR-stimulated proliferation, IL-2 production and phospholipase C-gamma1 activation. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212776 cd11842, SH3_Ysc84p_like, Src homology 3 domain of Ysc84p and similar fungal proteins

 Score = 50.9 bits (122), Expect = 1e-08
 Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH--WWTAQNISGEVGSIPVPYVQ 164
           K +A YDF G  P DL F+K DI+ ++ K +    WWT + I G  G  P  YV+
Sbjct: 1   KAVALYDFAGEQPGDLAFQKGDIITILKKSDSQNDWWTGR-IGGREGIFPANYVE 54

This family is composed of the Saccharomyces cerevisiae proteins, Ysc84p (also called LAS17-binding protein 4, Lsb4p) and Lsb3p, and similar fungal proteins. They contain an N-terminal SYLF domain (also called DUF500) and a C-terminal SH3 domain. Ysc84p localizes to actin patches and plays an important in actin polymerization during endocytosis. The N-terminal domain of both Ysc84p and Lsb3p can bind and bundle actin filaments. A study of the yeast SH3 domain interactome predicts that the SH3 domains of Lsb3p and Lsb4p may function as molecular hubs for the assembly of endocytic complexes. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212776 cd11842, SH3_Ysc84p_like, Src homology 3 domain of Ysc84p and similar fungal proteins

 Score = 50.9 bits (122), Expect = 1e-08
 Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH--WWTAQNISGEVGSIPVPYVQ 439
           K +A YDF G  P DL F+K DI+ ++ K +    WWT + I G  G  P  YV+
Sbjct: 1   KAVALYDFAGEQPGDLAFQKGDIITILKKSDSQNDWWTGR-IGGREGIFPANYVE 54

This family is composed of the Saccharomyces cerevisiae proteins, Ysc84p (also called LAS17-binding protein 4, Lsb4p) and Lsb3p, and similar fungal proteins. They contain an N-terminal SYLF domain (also called DUF500) and a C-terminal SH3 domain. Ysc84p localizes to actin patches and plays an important in actin polymerization during endocytosis. The N-terminal domain of both Ysc84p and Lsb3p can bind and bundle actin filaments. A study of the yeast SH3 domain interactome predicts that the SH3 domains of Lsb3p and Lsb4p may function as molecular hubs for the assembly of endocytic complexes. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|198186 cd09932, SH2_C-SH2_PLC_gamma_like, C-terminal Src homology 2 (C-SH2) domain in Phospholipase C gamma

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 5/90 (5%)

Query: 8  HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKIT 67
          H+   W+   +TR++A+ +L+    +GAFLVR S T   ++ +  +   K+ H  I +  
Sbjct: 1  HESKEWFHANLTREQAEEMLMRVPRDGAFLVRPSETDPNSFAISFRAEGKIKHCRIKQ-- 58

Query: 68 NTEQQTCYKIGDKTFSDLPSLLAFYKVHYL 97
            E +  + IG   F  L  L+++Y+ H L
Sbjct: 59 --EGRL-FVIGTSQFESLVELVSYYEKHPL 85

Phospholipase C gamma is a signaling molecule that is recruited to the C-terminal tail of the receptor upon autophosphorylation of a highly conserved tyrosine. PLCgamma is composed of a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, 2 catalytic regions of PLC domains that flank 2 tandem SH2 domains (N-SH2, C-SH2), and ending with a SH3 domain and C2 domain. N-SH2 SH2 domain-mediated interactions represent a crucial step in transmembrane signaling by receptor tyrosine kinases. SH2 domains recognize phosphotyrosine (pY) in the context of particular sequence motifs in receptor phosphorylation sites. Both N-SH2 and C-SH2 have a very similar binding affinity to pY. But in growth factor stimulated cells these domains bind to different target proteins. N-SH2 binds to pY containing sites in the C-terminal tails of tyrosine kinases and other receptors. Recently it has been shown that this interaction is mediated by phosphorylation-independent interactions between a secondary binding site found exclusively on the N-SH2 domain and a region of the FGFR1 tyrosine kinase domain. This secondary site on the SH2 cooperates with the canonical pY site to regulate selectivity in mediating a specific cellular process. C-SH2 binds to an intramolecular site on PLCgamma itself which allows it to hydrolyze phosphatidylinositol-4,5-bisphosphate into diacylglycerol and inositol triphosphate. These then activate protein kinase C and release calcium. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|198186 cd09932, SH2_C-SH2_PLC_gamma_like, C-terminal Src homology 2 (C-SH2) domain in Phospholipase C gamma

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 5/90 (5%)

Query: 283 HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKIT 342
           H+   W+   +TR++A+ +L+    +GAFLVR S T   ++ +  +   K+ H  I +  
Sbjct: 1   HESKEWFHANLTREQAEEMLMRVPRDGAFLVRPSETDPNSFAISFRAEGKIKHCRIKQ-- 58

Query: 343 NTEQQTCYKIGDKTFSDLPSLLAFYKVHYL 372
             E +  + IG   F  L  L+++Y+ H L
Sbjct: 59  --EGRL-FVIGTSQFESLVELVSYYEKHPL 85

Phospholipase C gamma is a signaling molecule that is recruited to the C-terminal tail of the receptor upon autophosphorylation of a highly conserved tyrosine. PLCgamma is composed of a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, 2 catalytic regions of PLC domains that flank 2 tandem SH2 domains (N-SH2, C-SH2), and ending with a SH3 domain and C2 domain. N-SH2 SH2 domain-mediated interactions represent a crucial step in transmembrane signaling by receptor tyrosine kinases. SH2 domains recognize phosphotyrosine (pY) in the context of particular sequence motifs in receptor phosphorylation sites. Both N-SH2 and C-SH2 have a very similar binding affinity to pY. But in growth factor stimulated cells these domains bind to different target proteins. N-SH2 binds to pY containing sites in the C-terminal tails of tyrosine kinases and other receptors. Recently it has been shown that this interaction is mediated by phosphorylation-independent interactions between a secondary binding site found exclusively on the N-SH2 domain and a region of the FGFR1 tyrosine kinase domain. This secondary site on the SH2 cooperates with the canonical pY site to regulate selectivity in mediating a specific cellular process. C-SH2 binds to an intramolecular site on PLCgamma itself which allows it to hydrolyze phosphatidylinositol-4,5-bisphosphate into diacylglycerol and inositol triphosphate. These then activate protein kinase C and release calcium. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|212716 cd11782, SH3_Sorbs_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           +  AKY+F+ +   +L F+K D++ +  + +E+W+  + I G  G  PV YVQ
Sbjct: 1   EARAKYNFNADTGVELSFRKGDVITLTRRVDENWYEGR-IGGRQGIFPVSYVQ 52

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the second SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212716 cd11782, SH3_Sorbs_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
           +  AKY+F+ +   +L F+K D++ +  + +E+W+  + I G  G  PV YVQ
Sbjct: 1   EARAKYNFNADTGVELSFRKGDVITLTRRVDENWYEGR-IGGRQGIFPVSYVQ 52

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the second SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212884 cd11951, SH3_GRAP_C, C-terminal Src homology 3 domain of GRB2-related adaptor protein

 Score = 50.2 bits (120), Expect = 2e-08
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           V A+YDF   DP  L F++ DI+ V+   + +WW  + ISG VG  P  YV 
Sbjct: 2   VQAQYDFSAEDPSQLSFRRGDIIEVLDCPDPNWWRGR-ISGRVGFFPRNYVH 52

GRAP is a GRB-2 like adaptor protein that is highly expressed in lymphoid tissues. It acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. It has been identified as a regulator of TGFbeta signaling in diabetic kidney tubules and may have a role in the pathogenesis of the disease. GRAP contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domains (SH3c) of the related proteins, GRB2 and GRAP2, have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212884 cd11951, SH3_GRAP_C, C-terminal Src homology 3 domain of GRB2-related adaptor protein

 Score = 50.2 bits (120), Expect = 2e-08
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
           V A+YDF   DP  L F++ DI+ V+   + +WW  + ISG VG  P  YV 
Sbjct: 2   VQAQYDFSAEDPSQLSFRRGDIIEVLDCPDPNWWRGR-ISGRVGFFPRNYVH 52

GRAP is a GRB-2 like adaptor protein that is highly expressed in lymphoid tissues. It acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. It has been identified as a regulator of TGFbeta signaling in diabetic kidney tubules and may have a role in the pathogenesis of the disease. GRAP contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domains (SH3c) of the related proteins, GRB2 and GRAP2, have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212979 cd12046, SH3_p67phox_C, C-terminal (or second) Src Homology 3 domain of the p67phox subunit of NADPH oxidase

 Score = 50.2 bits (120), Expect = 2e-08
 Identities = 18/53 (33%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           +V+A + ++ + P+DL F+K D+++V+SK  E W   Q   G++G  P  +V+
Sbjct: 1   QVVALFSYEASQPEDLEFQKGDVILVLSKVNEDWLEGQ-CKGKIGIFPSAFVE 52

p67phox, also called Neutrophil cytosol factor 2 (NCF-2), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox plays a regulatory role and contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. It binds, via its C-terminal SH3 domain, to a proline-rich region of p47phox and upon activation, this complex assembles with flavocytochrome b558, the Nox2-p22phox heterodimer. Concurrently, RacGTP translocates to the membrane and interacts with the TPR domain of p67phox, which leads to the activation of NADPH oxidase. The PB1 domain of p67phox binds to its partner PB1 domain in p40phox, and this facilitates the assembly of p47phox-p67phox at the membrane. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212979 cd12046, SH3_p67phox_C, C-terminal (or second) Src Homology 3 domain of the p67phox subunit of NADPH oxidase

 Score = 50.2 bits (120), Expect = 2e-08
 Identities = 18/53 (33%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
           +V+A + ++ + P+DL F+K D+++V+SK  E W   Q   G++G  P  +V+
Sbjct: 1   QVVALFSYEASQPEDLEFQKGDVILVLSKVNEDWLEGQ-CKGKIGIFPSAFVE 52

p67phox, also called Neutrophil cytosol factor 2 (NCF-2), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox plays a regulatory role and contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. It binds, via its C-terminal SH3 domain, to a proline-rich region of p47phox and upon activation, this complex assembles with flavocytochrome b558, the Nox2-p22phox heterodimer. Concurrently, RacGTP translocates to the membrane and interacts with the TPR domain of p67phox, which leads to the activation of NADPH oxidase. The PB1 domain of p67phox binds to its partner PB1 domain in p40phox, and this facilitates the assembly of p47phox-p67phox at the membrane. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212792 cd11858, SH3_Myosin-I_fungi, Src homology 3 domain of Type I fungal Myosins

 Score = 50.1 bits (120), Expect = 3e-08
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEV-GSIPVPYVQ 164
           A YDF G+  ++L  KK+DI+ +V K++  WW A+ +     G +P  Y++
Sbjct: 4   ALYDFAGSVANELSLKKDDIVYIVQKEDNGWWLAKKLDESKEGWVPAAYLE 54

Type I myosins (myosin-I) are actin-dependent motors in endocytic actin structures and actin patches. They play roles in membrane traffic in endocytic and secretory pathways, cell motility, and mechanosensing. Saccharomyces cerevisiae has two myosins-I, Myo3 and Myo5, which are involved in endocytosis and the polarization of the actin cytoskeleton. Myosin-I contains an N-terminal actin-activated ATPase, a phospholipid-binding TH1 (tail homology 1) domain, and a C-terminal extension which includes an F-actin-binding TH2 domain, an SH3 domain, and an acidic peptide that participates in activating the Arp2/3complex. The SH3 domain of myosin-I is required for myosin-I-induced actin polymerization. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212792 cd11858, SH3_Myosin-I_fungi, Src homology 3 domain of Type I fungal Myosins

 Score = 50.1 bits (120), Expect = 3e-08
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 390 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEV-GSIPVPYVQ 439
           A YDF G+  ++L  KK+DI+ +V K++  WW A+ +     G +P  Y++
Sbjct: 4   ALYDFAGSVANELSLKKDDIVYIVQKEDNGWWLAKKLDESKEGWVPAAYLE 54

Type I myosins (myosin-I) are actin-dependent motors in endocytic actin structures and actin patches. They play roles in membrane traffic in endocytic and secretory pathways, cell motility, and mechanosensing. Saccharomyces cerevisiae has two myosins-I, Myo3 and Myo5, which are involved in endocytosis and the polarization of the actin cytoskeleton. Myosin-I contains an N-terminal actin-activated ATPase, a phospholipid-binding TH1 (tail homology 1) domain, and a C-terminal extension which includes an F-actin-binding TH2 domain, an SH3 domain, and an acidic peptide that participates in activating the Arp2/3complex. The SH3 domain of myosin-I is required for myosin-I-induced actin polymerization. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|199831 cd10369, SH2_Src_Frk, Src homology 2 (SH2) domain found in the Fyn-related kinase (Frk)

 Score = 51.0 bits (122), Expect = 4e-08
 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 4/81 (4%)

Query: 13 WYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 71
          W+FG + R +A+  LL SE   GAFL+R+S +  G + L V +   V HY I ++   ++
Sbjct: 5  WFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGEFSLSVLDGGVVKHYRIRRL---DE 61

Query: 72 QTCYKIGDKTFSDLPSLLAFY 92
             +    KTFS L   + +Y
Sbjct: 62 GGFFLTRRKTFSTLNEFVNYY 82

Frk is a member of the Src non-receptor type tyrosine kinase family of proteins. The Frk subfamily is composed of Frk/Rak and Iyk/Bsk/Gst. It is expressed primarily epithelial cells. Frk is a nuclear protein and may function during G1 and S phase of the cell cycle and suppress growth. Unlike the other Src members it lacks a glycine at position 2 of SH4 which is important for addition of a myristic acid moiety that is involved in targeting Src PTKs to cellular membranes. FRK and SHB exert similar effects when overexpressed in rat phaeochromocytoma (PC12) and beta-cells, where both induce PC12 cell differentiation and beta-cell proliferation. Under conditions that cause beta-cell degeneration these proteins augment beta-cell apoptosis. The FRK-SHB responses involve FAK and insulin receptor substrates (IRS) -1 and -2. Frk has been demonstrated to interact with retinoblastoma protein. Frk regulates PTEN protein stability by phosphorylating PTEN, which in turn prevents PTEN degradation. Frk also plays a role in regulation of embryonal pancreatic beta cell formation. Frk has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. Like the other members of the Src family the SH2 domain in addition to binding the target, also plays an autoinhibitory role by binding to its activation loop. The tryosine involved is at the same site as the tyrosine involved in the autophosphorylation of Src. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 96

>gnl|CDD|199831 cd10369, SH2_Src_Frk, Src homology 2 (SH2) domain found in the Fyn-related kinase (Frk)

 Score = 51.0 bits (122), Expect = 4e-08
 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 4/81 (4%)

Query: 288 WYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 346
           W+FG + R +A+  LL SE   GAFL+R+S +  G + L V +   V HY I ++   ++
Sbjct: 5   WFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGEFSLSVLDGGVVKHYRIRRL---DE 61

Query: 347 QTCYKIGDKTFSDLPSLLAFY 367
              +    KTFS L   + +Y
Sbjct: 62  GGFFLTRRKTFSTLNEFVNYY 82

Frk is a member of the Src non-receptor type tyrosine kinase family of proteins. The Frk subfamily is composed of Frk/Rak and Iyk/Bsk/Gst. It is expressed primarily epithelial cells. Frk is a nuclear protein and may function during G1 and S phase of the cell cycle and suppress growth. Unlike the other Src members it lacks a glycine at position 2 of SH4 which is important for addition of a myristic acid moiety that is involved in targeting Src PTKs to cellular membranes. FRK and SHB exert similar effects when overexpressed in rat phaeochromocytoma (PC12) and beta-cells, where both induce PC12 cell differentiation and beta-cell proliferation. Under conditions that cause beta-cell degeneration these proteins augment beta-cell apoptosis. The FRK-SHB responses involve FAK and insulin receptor substrates (IRS) -1 and -2. Frk has been demonstrated to interact with retinoblastoma protein. Frk regulates PTEN protein stability by phosphorylating PTEN, which in turn prevents PTEN degradation. Frk also plays a role in regulation of embryonal pancreatic beta cell formation. Frk has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. Like the other members of the Src family the SH2 domain in addition to binding the target, also plays an autoinhibitory role by binding to its activation loop. The tryosine involved is at the same site as the tyrosine involved in the autophosphorylation of Src. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 96

>gnl|CDD|198193 cd09940, SH2_Vav_family, Src homology 2 (SH2) domain found in the Vav family

 Score = 51.1 bits (123), Expect = 4e-08
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 6/86 (6%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
          W+ G M R  A+  L +  D G +LVR        Y L +K N  V H  I +       
Sbjct: 7  WFVGEMERDTAENRLENRPD-GTYLVRVRPQGETQYALSIKYNGDVKHMKIEQ----RSD 61

Query: 73 TCYKIGDKT-FSDLPSLLAFYKVHYL 97
            Y + +   F  L  L+ +Y+ + L
Sbjct: 62 GLYYLSESRHFKSLVELVNYYERNSL 87

Vav proteins are involved in several processes that require cytoskeletal reorganization, such as the formation of the immunological synapse (IS), phagocytosis, platelet aggregation, spreading, and transformation. Vavs function as guanine nucleotide exchange factors (GEFs) for the Rho/Rac family of GTPases. Vav family members have several conserved motifs/domains including: a leucine-rich region, a leucine-zipper, a calponin homology (CH) domain, an acidic domain, a Dbl-homology (DH) domain, a pleckstrin homology (PH) domain, a cysteine-rich domain, 2 SH3 domains, a proline-rich region, and a SH2 domain. Vavs are the only known Rho GEFs that have both the DH/PH motifs and SH2/SH3 domains in the same protein. The leucine-rich helix-loop-helix (HLH) domain is thought to be involved in protein heterodimerization with other HLH proteins and it may function as a negative regulator by forming inactive heterodimers. The CH domain is usually involved in the association with filamentous actin, but in Vav it controls NFAT stimulation, Ca2+ mobilization, and its transforming activity. Acidic domains are involved in protein-protein interactions and contain regulatory tyrosines. The DH domain is a GDP-GTP exchange factor on Rho/Rac GTPases. The PH domain in involved in interactions with GTP-binding proteins, lipids and/or phosphorylated serine/threonine residues. The SH3 domain is involved in localization of proteins to specific sites within the cell interacting with protein with proline-rich sequences. The SH2 domain mediates a high affinity interaction with tyrosine phosphorylated proteins. There are three Vav mammalian family members: Vav1 which is expressed in the hematopoietic system, Vav2 and Vav3 are more ubiquitously expressed. The members here include insect and amphibian Vavs. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 102

>gnl|CDD|198193 cd09940, SH2_Vav_family, Src homology 2 (SH2) domain found in the Vav family

 Score = 51.1 bits (123), Expect = 4e-08
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 6/86 (6%)

Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 347
           W+ G M R  A+  L +  D G +LVR        Y L +K N  V H  I +       
Sbjct: 7   WFVGEMERDTAENRLENRPD-GTYLVRVRPQGETQYALSIKYNGDVKHMKIEQ----RSD 61

Query: 348 TCYKIGDKT-FSDLPSLLAFYKVHYL 372
             Y + +   F  L  L+ +Y+ + L
Sbjct: 62  GLYYLSESRHFKSLVELVNYYERNSL 87

Vav proteins are involved in several processes that require cytoskeletal reorganization, such as the formation of the immunological synapse (IS), phagocytosis, platelet aggregation, spreading, and transformation. Vavs function as guanine nucleotide exchange factors (GEFs) for the Rho/Rac family of GTPases. Vav family members have several conserved motifs/domains including: a leucine-rich region, a leucine-zipper, a calponin homology (CH) domain, an acidic domain, a Dbl-homology (DH) domain, a pleckstrin homology (PH) domain, a cysteine-rich domain, 2 SH3 domains, a proline-rich region, and a SH2 domain. Vavs are the only known Rho GEFs that have both the DH/PH motifs and SH2/SH3 domains in the same protein. The leucine-rich helix-loop-helix (HLH) domain is thought to be involved in protein heterodimerization with other HLH proteins and it may function as a negative regulator by forming inactive heterodimers. The CH domain is usually involved in the association with filamentous actin, but in Vav it controls NFAT stimulation, Ca2+ mobilization, and its transforming activity. Acidic domains are involved in protein-protein interactions and contain regulatory tyrosines. The DH domain is a GDP-GTP exchange factor on Rho/Rac GTPases. The PH domain in involved in interactions with GTP-binding proteins, lipids and/or phosphorylated serine/threonine residues. The SH3 domain is involved in localization of proteins to specific sites within the cell interacting with protein with proline-rich sequences. The SH2 domain mediates a high affinity interaction with tyrosine phosphorylated proteins. There are three Vav mammalian family members: Vav1 which is expressed in the hematopoietic system, Vav2 and Vav3 are more ubiquitously expressed. The members here include insect and amphibian Vavs. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 102

>gnl|CDD|212911 cd11978, SH3_VAV3_2, C-terminal (or second) Src homology 3 domain of VAV3 protein

 Score = 49.6 bits (118), Expect = 4e-08
 Identities = 22/44 (50%), Positives = 29/44 (65%), Gaps = 1/44 (2%)

Query: 218 AYDKTALKLEIGDIIKV-TKTNINGQWEGELNGKTGHFPFTHVE 260
           A D   L L  GD++K+ TK + NG W GE+NG+ G FP T+VE
Sbjct: 11  ARDMRELSLLKGDVVKIYTKMSTNGWWRGEVNGRVGWFPSTYVE 54

VAV3 is ubiquitously expressed and functions as a phosphorylation-dependent guanine nucleotide exchange factor (GEF) for RhoA, RhoG, and Rac1. It has been implicated to function in the hematopoietic, bone, cerebellar, and cardiovascular systems. VAV3 is essential in axon guidance in neurons that control blood pressure and respiration. It is overexpressed in prostate cancer cells and it plays a role in regulating androgen receptor transcriptional activity. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212911 cd11978, SH3_VAV3_2, C-terminal (or second) Src homology 3 domain of VAV3 protein

 Score = 49.6 bits (118), Expect = 4e-08
 Identities = 22/44 (50%), Positives = 29/44 (65%), Gaps = 1/44 (2%)

Query: 493 AYDKTALKLEIGDIIKV-TKTNINGQWEGELNGKTGHFPFTHVE 535
           A D   L L  GD++K+ TK + NG W GE+NG+ G FP T+VE
Sbjct: 11  ARDMRELSLLKGDVVKIYTKMSTNGWWRGEVNGRVGWFPSTYVE 54

VAV3 is ubiquitously expressed and functions as a phosphorylation-dependent guanine nucleotide exchange factor (GEF) for RhoA, RhoG, and Rac1. It has been implicated to function in the hematopoietic, bone, cerebellar, and cardiovascular systems. VAV3 is essential in axon guidance in neurons that control blood pressure and respiration. It is overexpressed in prostate cancer cells and it plays a role in regulating androgen receptor transcriptional activity. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212761 cd11827, SH3_MyoIe_If_like, Src homology 3 domain of Myosins Ie, If, and similar proteins

 Score = 49.3 bits (118), Expect = 5e-08
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           A Y +D  D D+L F + DI+ ++ +D   WWT + + G+ G  P  YV+K
Sbjct: 4   ALYAYDAQDTDELSFNEGDIIEILKEDPSGWWTGR-LRGKEGLFPGNYVEK 53

Myosins Ie (MyoIe) and If (MyoIf) are nonmuscle, unconventional, long tailed, class I myosins containing an N-terminal motor domain and a myosin tail with TH1, TH2, and SH3 domains. MyoIe interacts with the endocytic proteins, dynamin and synaptojanin-1, through its SH3 domain; it may play a role in clathrin-dependent endocytosis. In the kidney, MyoIe is critical for podocyte function and normal glomerular filtration. Mutations in MyoIe is associated with focal segmental glomerulosclerosis, a disease characterized by massive proteinuria and progression to end-stage kidney disease. MyoIf is predominantly expressed in the immune system; it plays a role in immune cell motility and innate immunity. Mutations in MyoIf may be associated with the loss of hearing. The MyoIf gene has also been found to be fused to the MLL (Mixed lineage leukemia) gene in infant acute myeloid leukemias (AML). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212761 cd11827, SH3_MyoIe_If_like, Src homology 3 domain of Myosins Ie, If, and similar proteins

 Score = 49.3 bits (118), Expect = 5e-08
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 390 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 440
           A Y +D  D D+L F + DI+ ++ +D   WWT + + G+ G  P  YV+K
Sbjct: 4   ALYAYDAQDTDELSFNEGDIIEILKEDPSGWWTGR-LRGKEGLFPGNYVEK 53

Myosins Ie (MyoIe) and If (MyoIf) are nonmuscle, unconventional, long tailed, class I myosins containing an N-terminal motor domain and a myosin tail with TH1, TH2, and SH3 domains. MyoIe interacts with the endocytic proteins, dynamin and synaptojanin-1, through its SH3 domain; it may play a role in clathrin-dependent endocytosis. In the kidney, MyoIe is critical for podocyte function and normal glomerular filtration. Mutations in MyoIe is associated with focal segmental glomerulosclerosis, a disease characterized by massive proteinuria and progression to end-stage kidney disease. MyoIf is predominantly expressed in the immune system; it plays a role in immune cell motility and innate immunity. Mutations in MyoIf may be associated with the loss of hearing. The MyoIf gene has also been found to be fused to the MLL (Mixed lineage leukemia) gene in infant acute myeloid leukemias (AML). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|198179 cd09925, SH2_SHC, Src homology 2 (SH2) domain found in SH2 adaptor protein C (SHC)

 Score = 50.8 bits (122), Expect = 5e-08
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 3/58 (5%)

Query: 6  DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
          +      WY G M+R++A+++L   + +G FLVR+S T  G YVL   +N +  H ++
Sbjct: 2  EQLRGEPWYHGKMSRRDAESLL---QTDGDFLVRESTTTPGQYVLTGMQNGQPKHLLL 56

SHC is involved in a wide variety of pathways including regulating proliferation, angiogenesis, invasion and metastasis, and bone metabolism. An adapter protein, SHC has been implicated in Ras activation following the stimulation of a number of different receptors, including growth factors [insulin, epidermal growth factor (EGF), nerve growth factor, and platelet derived growth factor (PDGF)], cytokines [interleukins 2, 3, and 5], erythropoietin, and granulocyte/macrophage colony-stimulating factor, and antigens [T-cell and B-cell receptors]. SHC has been shown to bind to tyrosine-phosphorylated receptors, and receptor stimulation leads to tyrosine phosphorylation of SHC. Upon phosphorylation, SHC interacts with another adapter protein, Grb2, which binds to the Ras GTP/GDP exchange factor mSOS which leads to Ras activation. SHC is composed of an N-terminal domain that interacts with proteins containing phosphorylated tyrosines, a (glycine/proline)-rich collagen-homology domain that contains the phosphorylated binding site, and a C-terminal SH2 domain. SH2 has been shown to interact with the tyrosine-phosphorylated receptors of EGF and PDGF and with the tyrosine-phosphorylated C chain of the T-cell receptor, providing one of the mechanisms of T-cell-mediated Ras activation. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|198179 cd09925, SH2_SHC, Src homology 2 (SH2) domain found in SH2 adaptor protein C (SHC)

 Score = 50.8 bits (122), Expect = 5e-08
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 3/58 (5%)

Query: 281 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 338
           +      WY G M+R++A+++L   + +G FLVR+S T  G YVL   +N +  H ++
Sbjct: 2   EQLRGEPWYHGKMSRRDAESLL---QTDGDFLVRESTTTPGQYVLTGMQNGQPKHLLL 56

SHC is involved in a wide variety of pathways including regulating proliferation, angiogenesis, invasion and metastasis, and bone metabolism. An adapter protein, SHC has been implicated in Ras activation following the stimulation of a number of different receptors, including growth factors [insulin, epidermal growth factor (EGF), nerve growth factor, and platelet derived growth factor (PDGF)], cytokines [interleukins 2, 3, and 5], erythropoietin, and granulocyte/macrophage colony-stimulating factor, and antigens [T-cell and B-cell receptors]. SHC has been shown to bind to tyrosine-phosphorylated receptors, and receptor stimulation leads to tyrosine phosphorylation of SHC. Upon phosphorylation, SHC interacts with another adapter protein, Grb2, which binds to the Ras GTP/GDP exchange factor mSOS which leads to Ras activation. SHC is composed of an N-terminal domain that interacts with proteins containing phosphorylated tyrosines, a (glycine/proline)-rich collagen-homology domain that contains the phosphorylated binding site, and a C-terminal SH2 domain. SH2 has been shown to interact with the tyrosine-phosphorylated receptors of EGF and PDGF and with the tyrosine-phosphorylated C chain of the T-cell receptor, providing one of the mechanisms of T-cell-mediated Ras activation. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|212901 cd11968, SH3_SASH3, Src homology 3 domain of Sam And SH3 Domain Containing Protein 3

 Score = 48.3 bits (115), Expect = 9e-08
 Identities = 23/53 (43%), Positives = 32/53 (60%)

Query: 208 ARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
           ARV    +P+ YD  +LKL+ GDII++ +    G W G LN K G F F +V+
Sbjct: 3   ARVHTDFIPSPYDGDSLKLQKGDIIQIIEKPPVGTWTGLLNNKVGTFKFIYVD 55

SASH3, also called SLY/SLY1 (SH3-domain containing protein expressed in lymphocytes), is expressed exclusively in lymhocytes and is essential in the full activation of adaptive immunity. It is involved in the signaling of T cell receptors. It was the first described member of the SLY family of proteins, which are adaptor proteins containing a central conserved region with a bipartite nuclear localization signal (NLS) as well as SAM (sterile alpha motif) and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212901 cd11968, SH3_SASH3, Src homology 3 domain of Sam And SH3 Domain Containing Protein 3

 Score = 48.3 bits (115), Expect = 9e-08
 Identities = 23/53 (43%), Positives = 32/53 (60%)

Query: 483 ARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 535
           ARV    +P+ YD  +LKL+ GDII++ +    G W G LN K G F F +V+
Sbjct: 3   ARVHTDFIPSPYDGDSLKLQKGDIIQIIEKPPVGTWTGLLNNKVGTFKFIYVD 55

SASH3, also called SLY/SLY1 (SH3-domain containing protein expressed in lymphocytes), is expressed exclusively in lymhocytes and is essential in the full activation of adaptive immunity. It is involved in the signaling of T cell receptors. It was the first described member of the SLY family of proteins, which are adaptor proteins containing a central conserved region with a bipartite nuclear localization signal (NLS) as well as SAM (sterile alpha motif) and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|198271 cd10408, SH2_Nck1, Src homology 2 (SH2) domain found in Nck

 Score = 49.6 bits (118), Expect = 1e-07
 Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 5/83 (6%)

Query: 11 NSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTE 70
          N WY+G +TR +A+  L    + G FL+RDS +   ++ + +K   K  H+ +       
Sbjct: 1  NPWYYGKVTRHQAEMALNERGNEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQL----- 55

Query: 71 QQTCYKIGDKTFSDLPSLLAFYK 93
          ++  Y IG + FS +  L+  YK
Sbjct: 56 KECVYCIGQRKFSSMEELVEHYK 78

Nck proteins are adaptors that modulate actin cytoskeleton dynamics by linking proline-rich effector molecules to tyrosine kinases or phosphorylated signaling intermediates. There are two members known in this family: Nck1 (Nckalpha) and Nck2 (Nckbeta and Growth factor receptor-bound protein 4 (Grb4)). They are characterized by having 3 SH3 domains and a C-terminal SH2 domain. Nck1 and Nck2 have overlapping functions as determined by gene knockouts. Both bind receptor tyrosine kinases and other tyrosine-phosphorylated proteins through their SH2 domains. In addition they also bind distinct targets. Neuronal signaling proteins: EphrinB1, EphrinB2, and Disabled-1 (Dab-1) all bind to Nck-2 exclusively. And in the case of PDGFR, Tyr(P)751 binds to Nck1 while Tyr(P)1009 binds to Nck2. Nck1 and Nck2 have a role in the infection process of enteropathogenic Escherichia coli (EPEC). Their SH3 domains are involved in recruiting and activating the N-WASP/Arp2/3 complex inducing actin polymerization resulting in the production of pedestals, dynamic bacteria-presenting protrusions of the plasma membrane. A similar thing occurs in the vaccinia virus where motile plasma membrane projections are formed beneath the virus. Recently it has been shown that the SH2 domains of both Nck1 and Nck2 bind the G-protein coupled receptor kinase-interacting protein 1 (GIT1) in a phosphorylation-dependent manner. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 97

>gnl|CDD|198271 cd10408, SH2_Nck1, Src homology 2 (SH2) domain found in Nck

 Score = 49.6 bits (118), Expect = 1e-07
 Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 5/83 (6%)

Query: 286 NSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTE 345
           N WY+G +TR +A+  L    + G FL+RDS +   ++ + +K   K  H+ +       
Sbjct: 1   NPWYYGKVTRHQAEMALNERGNEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQL----- 55

Query: 346 QQTCYKIGDKTFSDLPSLLAFYK 368
           ++  Y IG + FS +  L+  YK
Sbjct: 56  KECVYCIGQRKFSSMEELVEHYK 78

Nck proteins are adaptors that modulate actin cytoskeleton dynamics by linking proline-rich effector molecules to tyrosine kinases or phosphorylated signaling intermediates. There are two members known in this family: Nck1 (Nckalpha) and Nck2 (Nckbeta and Growth factor receptor-bound protein 4 (Grb4)). They are characterized by having 3 SH3 domains and a C-terminal SH2 domain. Nck1 and Nck2 have overlapping functions as determined by gene knockouts. Both bind receptor tyrosine kinases and other tyrosine-phosphorylated proteins through their SH2 domains. In addition they also bind distinct targets. Neuronal signaling proteins: EphrinB1, EphrinB2, and Disabled-1 (Dab-1) all bind to Nck-2 exclusively. And in the case of PDGFR, Tyr(P)751 binds to Nck1 while Tyr(P)1009 binds to Nck2. Nck1 and Nck2 have a role in the infection process of enteropathogenic Escherichia coli (EPEC). Their SH3 domains are involved in recruiting and activating the N-WASP/Arp2/3 complex inducing actin polymerization resulting in the production of pedestals, dynamic bacteria-presenting protrusions of the plasma membrane. A similar thing occurs in the vaccinia virus where motile plasma membrane projections are formed beneath the virus. Recently it has been shown that the SH2 domains of both Nck1 and Nck2 bind the G-protein coupled receptor kinase-interacting protein 1 (GIT1) in a phosphorylation-dependent manner. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 97

>gnl|CDD|198191 cd09938, SH2_N-SH2_Zap70_Syk_like, N-terminal Src homology 2 (SH2) domain found in Zeta-chain-associated protein kinase 70 (ZAP-70) and Spleen tyrosine kinase (Syk) proteins

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 13 WYFGMMTRQEAQAIL-LSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 68
          +++G +TR+EA+  L L+   +G FL+R S   LG YVL V    K  HY I +  N
Sbjct: 3  FFYGSITREEAEEYLKLAGMSDGLFLLRQSLRSLGGYVLSVCHGRKFHHYTIERQLN 59

ZAP-70 and Syk comprise a family of hematopoietic cell specific protein tyrosine kinases (PTKs) that are required for antigen and antibody receptor function. ZAP-70 is expressed in T and natural killer (NK) cells and Syk is expressed in B cells, mast cells, polymorphonuclear leukocytes, platelets, macrophages, and immature T cells. They are required for the proper development of T and B cells, immune receptors, and activating NK cells. They consist of two N-terminal Src homology 2 (SH2) domains and a C-terminal kinase domain separated from the SH2 domains by a linker or hinge region. Phosphorylation of both tyrosine residues within the Immunoreceptor Tyrosine-based Activation Motifs (ITAM; consensus sequence Yxx[LI]x(7,8)Yxx[LI]) by the Src-family PTKs is required for efficient interaction of ZAP-70 and Syk with the receptor subunits and for receptor function. ZAP-70 forms two phosphotyrosine binding pockets, one of which is shared by both SH2 domains. In Syk the two SH2 domains do not form such a phosphotyrosine-binding site. The SH2 domains here are believed to function independently. In addition, the two SH2 domains of Syk display flexibility in their relative orientation, allowing Syk to accommodate a greater variety of spacing sequences between the ITAM phosphotyrosines and singly phosphorylated non-classical ITAM ligands. This model contains the N-terminus SH2 domains of both Syk and Zap70. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|198191 cd09938, SH2_N-SH2_Zap70_Syk_like, N-terminal Src homology 2 (SH2) domain found in Zeta-chain-associated protein kinase 70 (ZAP-70) and Spleen tyrosine kinase (Syk) proteins

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 288 WYFGMMTRQEAQAIL-LSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 343
           +++G +TR+EA+  L L+   +G FL+R S   LG YVL V    K  HY I +  N
Sbjct: 3   FFYGSITREEAEEYLKLAGMSDGLFLLRQSLRSLGGYVLSVCHGRKFHHYTIERQLN 59

ZAP-70 and Syk comprise a family of hematopoietic cell specific protein tyrosine kinases (PTKs) that are required for antigen and antibody receptor function. ZAP-70 is expressed in T and natural killer (NK) cells and Syk is expressed in B cells, mast cells, polymorphonuclear leukocytes, platelets, macrophages, and immature T cells. They are required for the proper development of T and B cells, immune receptors, and activating NK cells. They consist of two N-terminal Src homology 2 (SH2) domains and a C-terminal kinase domain separated from the SH2 domains by a linker or hinge region. Phosphorylation of both tyrosine residues within the Immunoreceptor Tyrosine-based Activation Motifs (ITAM; consensus sequence Yxx[LI]x(7,8)Yxx[LI]) by the Src-family PTKs is required for efficient interaction of ZAP-70 and Syk with the receptor subunits and for receptor function. ZAP-70 forms two phosphotyrosine binding pockets, one of which is shared by both SH2 domains. In Syk the two SH2 domains do not form such a phosphotyrosine-binding site. The SH2 domains here are believed to function independently. In addition, the two SH2 domains of Syk display flexibility in their relative orientation, allowing Syk to accommodate a greater variety of spacing sequences between the ITAM phosphotyrosines and singly phosphorylated non-classical ITAM ligands. This model contains the N-terminus SH2 domains of both Syk and Zap70. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|198183 cd09929, SH2_BLNK_SLP-76, Src homology 2 (SH2) domain found in B-cell linker (BLNK) protein and SH2 domain-containing leukocyte protein of 76 kDa (SLP-76)

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 9  DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGN--YVLCVKENNKVSHYIINKI 66
              WY G + R+EA+  L     +G FLVRDS+    +  Y L V  N+KV +  I  +
Sbjct: 9  LPKEWYAGNIDRKEAEEALRRSNKDGTFLVRDSSGKDSSQPYTLMVLYNDKVYNIQIRFL 68

Query: 67 TNTEQ 71
           NT Q
Sbjct: 69 ENTRQ 73

BLNK (also known as SLP-65 or BASH) is an important adaptor protein expressed in B-lineage cells. BLNK consists of a N-terminal sterile alpha motif (SAM) domain and a C-terminal SH2 domain. BLNK is a cytoplasmic protein, but a part of it is bound to the plasma membrane through an N-terminal leucine zipper motif and transiently bound to a cytoplasmic domain of Iga through its C-terminal SH2 domain upon B cell antigen receptor (BCR)-stimulation. A non-ITAM phosphotyrosine in Iga is necessary for the binding with the BLNK SH2 domain and/or for normal BLNK function in signaling and B cell activation. Upon phosphorylation BLNK binds Btk and PLCgamma2 through their SH2 domains and mediates PLCgamma2 activation by Btk. BLNK also binds other signaling molecules such as Vav, Grb2, Syk, and HPK1. BLNK has been shown to be necessary for BCR-mediated Ca2+ mobilization, for the activation of mitogen-activated protein kinases such as ERK, JNK, and p38 in a chicken B cell line DT40, and for activation of transcription factors such as NF-AT and NF-kappaB in human or mouse B cells. BLNK is involved in B cell development, B cell survival, activation, proliferation, and T-independent immune responses. BLNK is structurally homologous to SLP-76. SLP-76 and (linker for activation of T cells) LAT are adaptor/linker proteins in T cell antigen receptor activation and T cell development. BLNK interacts with many downstream signaling proteins that interact directly with both SLP-76 and LAT. New data suggest functional complementation of SLP-76 and LAT in T cell antigen receptor function with BLNK in BCR function. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 121

>gnl|CDD|198183 cd09929, SH2_BLNK_SLP-76, Src homology 2 (SH2) domain found in B-cell linker (BLNK) protein and SH2 domain-containing leukocyte protein of 76 kDa (SLP-76)

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 284 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGN--YVLCVKENNKVSHYIINKI 341
               WY G + R+EA+  L     +G FLVRDS+    +  Y L V  N+KV +  I  +
Sbjct: 9   LPKEWYAGNIDRKEAEEALRRSNKDGTFLVRDSSGKDSSQPYTLMVLYNDKVYNIQIRFL 68

Query: 342 TNTEQ 346
            NT Q
Sbjct: 69  ENTRQ 73

BLNK (also known as SLP-65 or BASH) is an important adaptor protein expressed in B-lineage cells. BLNK consists of a N-terminal sterile alpha motif (SAM) domain and a C-terminal SH2 domain. BLNK is a cytoplasmic protein, but a part of it is bound to the plasma membrane through an N-terminal leucine zipper motif and transiently bound to a cytoplasmic domain of Iga through its C-terminal SH2 domain upon B cell antigen receptor (BCR)-stimulation. A non-ITAM phosphotyrosine in Iga is necessary for the binding with the BLNK SH2 domain and/or for normal BLNK function in signaling and B cell activation. Upon phosphorylation BLNK binds Btk and PLCgamma2 through their SH2 domains and mediates PLCgamma2 activation by Btk. BLNK also binds other signaling molecules such as Vav, Grb2, Syk, and HPK1. BLNK has been shown to be necessary for BCR-mediated Ca2+ mobilization, for the activation of mitogen-activated protein kinases such as ERK, JNK, and p38 in a chicken B cell line DT40, and for activation of transcription factors such as NF-AT and NF-kappaB in human or mouse B cells. BLNK is involved in B cell development, B cell survival, activation, proliferation, and T-independent immune responses. BLNK is structurally homologous to SLP-76. SLP-76 and (linker for activation of T cells) LAT are adaptor/linker proteins in T cell antigen receptor activation and T cell development. BLNK interacts with many downstream signaling proteins that interact directly with both SLP-76 and LAT. New data suggest functional complementation of SLP-76 and LAT in T cell antigen receptor function with BLNK in BCR function. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 121

>gnl|CDD|212747 cd11813, SH3_SGSM3, Src Homology 3 domain of Small G protein Signaling Modulator 3

 Score = 48.3 bits (115), Expect = 1e-07
 Identities = 19/50 (38%), Positives = 33/50 (66%), Gaps = 1/50 (2%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           A  DF+ +D D+L F+KNDI+ ++S+ +EH W  + ++G  G  P  +V+
Sbjct: 4   ALLDFERHDDDELGFRKNDIITIISQKDEHCWVGE-LNGLRGWFPAKFVE 52

SGSM3 is also called Merlin-associated protein (MAP), RUN and SH3 domain-containing protein (RUSC3), RUN and TBC1 domain-containing protein 3 (RUTBC3), Rab GTPase-activating protein 5 (RabGAP5), or Rab GAP-like protein (RabGAPLP). It is expressed ubiquitously and functions as a regulator of small G protein RAP- and RAB-mediated neuronal signaling. It is involved in modulating NGF-mediated neurite outgrowth and differentiation. It also interacts with the tumor suppressor merlin and may play a role in the merlin-associated suppression of cell growth. SGSM3 contains TBC, SH3, and RUN domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212747 cd11813, SH3_SGSM3, Src Homology 3 domain of Small G protein Signaling Modulator 3

 Score = 48.3 bits (115), Expect = 1e-07
 Identities = 19/50 (38%), Positives = 33/50 (66%), Gaps = 1/50 (2%)

Query: 390 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
           A  DF+ +D D+L F+KNDI+ ++S+ +EH W  + ++G  G  P  +V+
Sbjct: 4   ALLDFERHDDDELGFRKNDIITIISQKDEHCWVGE-LNGLRGWFPAKFVE 52

SGSM3 is also called Merlin-associated protein (MAP), RUN and SH3 domain-containing protein (RUSC3), RUN and TBC1 domain-containing protein 3 (RUTBC3), Rab GTPase-activating protein 5 (RabGAP5), or Rab GAP-like protein (RabGAPLP). It is expressed ubiquitously and functions as a regulator of small G protein RAP- and RAB-mediated neuronal signaling. It is involved in modulating NGF-mediated neurite outgrowth and differentiation. It also interacts with the tumor suppressor merlin and may play a role in the merlin-associated suppression of cell growth. SGSM3 contains TBC, SH3, and RUN domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212841 cd11908, SH3_ITK, Src Homology 3 domain of Interleukin-2-inducible T-cell Kinase

 Score = 48.1 bits (114), Expect = 1e-07
 Identities = 19/51 (37%), Positives = 29/51 (56%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
           VIA YD+  NDP +L  + N+   ++   E HWW  Q+ +G  G +P  Y+
Sbjct: 3   VIALYDYQTNDPQELALRYNEEYHLLDSSEIHWWRVQDKNGHEGYVPSSYL 53

ITK (also known as Tsk or Emt) is a cytoplasmic (or nonreceptor) tyr kinase containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. It also contains an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation, and the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. ITK is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, ITK plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, ITK is crucial for the development of T-helper(Th)2 effector responses. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212841 cd11908, SH3_ITK, Src Homology 3 domain of Interleukin-2-inducible T-cell Kinase

 Score = 48.1 bits (114), Expect = 1e-07
 Identities = 19/51 (37%), Positives = 29/51 (56%)

Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 438
           VIA YD+  NDP +L  + N+   ++   E HWW  Q+ +G  G +P  Y+
Sbjct: 3   VIALYDYQTNDPQELALRYNEEYHLLDSSEIHWWRVQDKNGHEGYVPSSYL 53

ITK (also known as Tsk or Emt) is a cytoplasmic (or nonreceptor) tyr kinase containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. It also contains an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation, and the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. ITK is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, ITK plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, ITK is crucial for the development of T-helper(Th)2 effector responses. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212697 cd11763, SH3_SNX9_like, Src Homology 3 domain of Sorting Nexin 9 and similar proteins

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDIL-IVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           KV A YDFD     +L  +  ++L I      + W   +N  GEVG  P  YV+
Sbjct: 1   KVRALYDFDSQPSGELSLRAGEVLTITRQDVGDGWLEGRNSRGEVGLFPSSYVE 54

Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. This subfamily consists of SH3 domain containing SNXs including SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212697 cd11763, SH3_SNX9_like, Src Homology 3 domain of Sorting Nexin 9 and similar proteins

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDIL-IVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
           KV A YDFD     +L  +  ++L I      + W   +N  GEVG  P  YV+
Sbjct: 1   KVRALYDFDSQPSGELSLRAGEVLTITRQDVGDGWLEGRNSRGEVGLFPSSYVE 54

Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. This subfamily consists of SH3 domain containing SNXs including SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|198184 cd09930, SH2_cSH2_p85_like, C-terminal Src homology 2 (cSH2) domain found in p85

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 8  HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
          HD  +W  G + R +A+ +L   K +G FL+R+S+T  G Y   V  N +V H +I K
Sbjct: 3  HDERTWLVGDINRTQAEELLRG-KPDGTFLIRESST-QGCYACSVVCNGEVKHCVIYK 58

Phosphoinositide 3-kinases (PI3Ks) are essential for cell growth, migration, and survival. p110, the catalytic subunit, is composed of an adaptor-binding domain, a Ras-binding domain, a C2 domain, a helical domain, and a kinase domain. The regulatory unit is called p85 and is composed of an SH3 domain, a RhoGap domain, a N-terminal SH2 (nSH2) domain, a inter SH2 (iSH2) domain, and C-terminal (cSH2) domain. There are 2 inhibitory interactions between p110alpha and p85 of P13K: 1) p85 nSH2 domain with the C2, helical, and kinase domains of p110alpha and 2) p85 iSH2 domain with C2 domain of p110alpha. There are 3 inhibitory interactions between p110beta and p85 of P13K: 1) p85 nSH2 domain with the C2, helical, and kinase domains of p110beta, 2) p85 iSH2 domain with C2 domain of p110alpha, and 3) p85 cSH2 domain with the kinase domain of p110alpha. It is interesting to note that p110beta is oncogenic as a wild type protein while p110alpha lacks this ability. One explanation is the idea that the regulation of p110beta by p85 is unique because of the addition of inhibitory contacts from the cSH2 domain and the loss of contacts in the iSH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|198184 cd09930, SH2_cSH2_p85_like, C-terminal Src homology 2 (cSH2) domain found in p85

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 283 HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 340
           HD  +W  G + R +A+ +L   K +G FL+R+S+T  G Y   V  N +V H +I K
Sbjct: 3   HDERTWLVGDINRTQAEELLRG-KPDGTFLIRESST-QGCYACSVVCNGEVKHCVIYK 58

Phosphoinositide 3-kinases (PI3Ks) are essential for cell growth, migration, and survival. p110, the catalytic subunit, is composed of an adaptor-binding domain, a Ras-binding domain, a C2 domain, a helical domain, and a kinase domain. The regulatory unit is called p85 and is composed of an SH3 domain, a RhoGap domain, a N-terminal SH2 (nSH2) domain, a inter SH2 (iSH2) domain, and C-terminal (cSH2) domain. There are 2 inhibitory interactions between p110alpha and p85 of P13K: 1) p85 nSH2 domain with the C2, helical, and kinase domains of p110alpha and 2) p85 iSH2 domain with C2 domain of p110alpha. There are 3 inhibitory interactions between p110beta and p85 of P13K: 1) p85 nSH2 domain with the C2, helical, and kinase domains of p110beta, 2) p85 iSH2 domain with C2 domain of p110alpha, and 3) p85 cSH2 domain with the kinase domain of p110alpha. It is interesting to note that p110beta is oncogenic as a wild type protein while p110alpha lacks this ability. One explanation is the idea that the regulation of p110beta by p85 is unique because of the addition of inhibitory contacts from the cSH2 domain and the loss of contacts in the iSH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|199832 cd10417, SH2_SH2D7, Src homology 2 domain found in the SH2 domain containing protein 7 (SH2D7)

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 8/83 (9%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
          W+ G +TR++ +  LL +K  G+FL+R S+   G Y+L  + +++  H++IN+     + 
Sbjct: 9  WFHGFITRKQTEQ-LLRDKALGSFLIRLSDRATG-YILSYRGSDRCRHFVINQ----LRN 62

Query: 73 TCYKI-GDK-TFSDLPSLLAFYK 93
            Y I GD  + S L  L+  Y+
Sbjct: 63 RRYLISGDTSSHSTLAELVRHYQ 85

SH2D7 contains a single SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 102

>gnl|CDD|199832 cd10417, SH2_SH2D7, Src homology 2 domain found in the SH2 domain containing protein 7 (SH2D7)

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 8/83 (9%)

Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 347
           W+ G +TR++ +  LL +K  G+FL+R S+   G Y+L  + +++  H++IN+     + 
Sbjct: 9   WFHGFITRKQTEQ-LLRDKALGSFLIRLSDRATG-YILSYRGSDRCRHFVINQ----LRN 62

Query: 348 TCYKI-GDK-TFSDLPSLLAFYK 368
             Y I GD  + S L  L+  Y+
Sbjct: 63  RRYLISGDTSSHSTLAELVRHYQ 85

SH2D7 contains a single SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 102

>gnl|CDD|212699 cd11765, SH3_Nck_1, First Src Homology 3 domain of Nck adaptor proteins

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
           V+AKYD+      +L  KKN+ L ++  D +HWW  QN S + G +P  YV
Sbjct: 2   VVAKYDYTAQGDQELSIKKNEKLTLLD-DSKHWWKVQNSSNQTGYVPSNYV 51

Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The first SH3 domain of Nck proteins preferentially binds the PxxDY sequence, which is present in the CD3e cytoplasmic tail. This binding inhibits phosphorylation by Src kinases, resulting in the downregulation of TCR surface expression. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212699 cd11765, SH3_Nck_1, First Src Homology 3 domain of Nck adaptor proteins

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 438
           V+AKYD+      +L  KKN+ L ++  D +HWW  QN S + G +P  YV
Sbjct: 2   VVAKYDYTAQGDQELSIKKNEKLTLLD-DSKHWWKVQNSSNQTGYVPSNYV 51

Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The first SH3 domain of Nck proteins preferentially binds the PxxDY sequence, which is present in the CD3e cytoplasmic tail. This binding inhibits phosphorylation by Src kinases, resulting in the downregulation of TCR surface expression. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212738 cd11804, SH3_GRB2_like_N, N-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 2/51 (3%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDE-EHWWTAQNISGEVGSIPVPYV 163
           +AK+DF     D+L FKK  IL V++ ++  +W+ A+ + G+ G IP  Y+
Sbjct: 3   VAKHDFKATAEDELSFKKGSILKVLNMEDDPNWYKAE-LDGKEGLIPKNYI 52

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The N-terminal SH3 domain of GRB2 binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212738 cd11804, SH3_GRB2_like_N, N-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 2/51 (3%)

Query: 389 IAKYDFDGNDPDDLPFKKNDILIVVSKDE-EHWWTAQNISGEVGSIPVPYV 438
           +AK+DF     D+L FKK  IL V++ ++  +W+ A+ + G+ G IP  Y+
Sbjct: 3   VAKHDFKATAEDELSFKKGSILKVLNMEDDPNWYKAE-LDGKEGLIPKNYI 52

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The N-terminal SH3 domain of GRB2 binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212764 cd11830, SH3_VAV_2, C-terminal (or second) Src homology 3 domain of VAV proteins

 Score = 47.6 bits (113), Expect = 2e-07
 Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 218 AYDKTALKLEIGDIIKV-TKTNINGQWEGELNGKTGHFPFTHVE 260
           A D   L L+ GD++K+  K    G W GE+NG+ G FP T+VE
Sbjct: 10  ARDMRELSLKEGDVVKIYNKKGQQGWWRGEINGRIGWFPSTYVE 53

VAV proteins function both as cytoplasmic guanine nucleotide exchange factors (GEFs) for Rho GTPases and scaffold proteins and they play important roles in cell signaling by coupling cell surface receptors to various effector functions. They play key roles in processes that require cytoskeletal reorganization including immune synapse formation, phagocytosis, cell spreading, and platelet aggregation, among others. Vertebrates have three VAV proteins (VAV1, VAV2, and VAV3). VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212764 cd11830, SH3_VAV_2, C-terminal (or second) Src homology 3 domain of VAV proteins

 Score = 47.6 bits (113), Expect = 2e-07
 Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 493 AYDKTALKLEIGDIIKV-TKTNINGQWEGELNGKTGHFPFTHVE 535
           A D   L L+ GD++K+  K    G W GE+NG+ G FP T+VE
Sbjct: 10  ARDMRELSLKEGDVVKIYNKKGQQGWWRGEINGRIGWFPSTYVE 53

VAV proteins function both as cytoplasmic guanine nucleotide exchange factors (GEFs) for Rho GTPases and scaffold proteins and they play important roles in cell signaling by coupling cell surface receptors to various effector functions. They play key roles in processes that require cytoskeletal reorganization including immune synapse formation, phagocytosis, cell spreading, and platelet aggregation, among others. Vertebrates have three VAV proteins (VAV1, VAV2, and VAV3). VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212760 cd11826, SH3_Abi, Src homology 3 domain of Abl Interactor proteins

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 25/47 (53%), Positives = 29/47 (61%), Gaps = 5/47 (10%)

Query: 219 YDKTALK-----LEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
           YD TA K      + GDII VTK N +G +EG LNG TG FP  +VE
Sbjct: 6   YDYTADKDDELSFQEGDIIYVTKKNDDGWYEGVLNGVTGLFPGNYVE 52

Abl interactor (Abi) proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. They localize to sites of actin polymerization in epithelial adherens junction and immune synapses, as well as to the leading edge of lamellipodia. Vertebrates contain two Abi proteins, Abi1 and Abi2. Abi1 displays a wide expression pattern while Abi2 is highly expressed in the eye and brain. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212760 cd11826, SH3_Abi, Src homology 3 domain of Abl Interactor proteins

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 25/47 (53%), Positives = 29/47 (61%), Gaps = 5/47 (10%)

Query: 494 YDKTALK-----LEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 535
           YD TA K      + GDII VTK N +G +EG LNG TG FP  +VE
Sbjct: 6   YDYTADKDDELSFQEGDIIYVTKKNDDGWYEGVLNGVTGLFPGNYVE 52

Abl interactor (Abi) proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. They localize to sites of actin polymerization in epithelial adherens junction and immune synapses, as well as to the leading edge of lamellipodia. Vertebrates contain two Abi proteins, Abi1 and Abi2. Abi1 displays a wide expression pattern while Abi2 is highly expressed in the eye and brain. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|198230 cd10367, SH2_Src_Fgr, Src homology 2 (SH2) domain found in Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog, Fgr

 Score = 48.7 bits (116), Expect = 2e-07
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 6/62 (9%)

Query: 13 WYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKI 66
          WYFG + R++A+  LLS  +  GAFL+R+S T  G Y L +++      + V HY I K+
Sbjct: 5  WYFGKIGRKDAERQLLSPGNPRGAFLIRESETTKGAYSLSIRDWDQNRGDHVKHYKIRKL 64

Query: 67 TN 68
            
Sbjct: 65 DT 66

Fgr is a member of the Src non-receptor type tyrosine kinase family of proteins. The protein contains N-terminal sites for myristoylation and palmitoylation, a PTK domain, and SH2 and SH3 domains which are involved in mediating protein-protein interactions with phosphotyrosine-containing and proline-rich motifs, respectively. Fgr is expressed in B-cells and myeloid cells, localizes to plasma membrane ruffles, and functions as a negative regulator of cell migration and adhesion triggered by the beta-2 integrin signal transduction pathway. Multiple alternatively spliced variants, encoding the same protein, have been identified Fgr has been shown to interact with Wiskott-Aldrich syndrome protein. Fgr has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198230 cd10367, SH2_Src_Fgr, Src homology 2 (SH2) domain found in Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog, Fgr

 Score = 48.7 bits (116), Expect = 2e-07
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 6/62 (9%)

Query: 288 WYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKI 341
           WYFG + R++A+  LLS  +  GAFL+R+S T  G Y L +++      + V HY I K+
Sbjct: 5   WYFGKIGRKDAERQLLSPGNPRGAFLIRESETTKGAYSLSIRDWDQNRGDHVKHYKIRKL 64

Query: 342 TN 343
             
Sbjct: 65  DT 66

Fgr is a member of the Src non-receptor type tyrosine kinase family of proteins. The protein contains N-terminal sites for myristoylation and palmitoylation, a PTK domain, and SH2 and SH3 domains which are involved in mediating protein-protein interactions with phosphotyrosine-containing and proline-rich motifs, respectively. Fgr is expressed in B-cells and myeloid cells, localizes to plasma membrane ruffles, and functions as a negative regulator of cell migration and adhesion triggered by the beta-2 integrin signal transduction pathway. Multiple alternatively spliced variants, encoding the same protein, have been identified Fgr has been shown to interact with Wiskott-Aldrich syndrome protein. Fgr has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|212757 cd11823, SH3_Nostrin, Src homology 3 domain of Nitric Oxide Synthase TRaffic INducer

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 23/45 (51%), Positives = 29/45 (64%), Gaps = 2/45 (4%)

Query: 216 PNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
            N  D+  L L+ GDII+V +   +G W GELNGK G FP T+VE
Sbjct: 10  ANREDE--LSLQPGDIIEVHEKQDDGWWLGELNGKKGIFPATYVE 52

Nostrin is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). It facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of Nostrin may be correlated to preeclampsia. Nostrin contains an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212757 cd11823, SH3_Nostrin, Src homology 3 domain of Nitric Oxide Synthase TRaffic INducer

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 23/45 (51%), Positives = 29/45 (64%), Gaps = 2/45 (4%)

Query: 491 PNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 535
            N  D+  L L+ GDII+V +   +G W GELNGK G FP T+VE
Sbjct: 10  ANREDE--LSLQPGDIIEVHEKQDDGWWLGELNGKKGIFPATYVE 52

Nostrin is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). It facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of Nostrin may be correlated to preeclampsia. Nostrin contains an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212839 cd11906, SH3_BTK, Src Homology 3 domain of Bruton's tyrosine kinase

 Score = 47.1 bits (112), Expect = 2e-07
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
           KV+A YD+   +  DL  +K +  +++ +    WW A++ +G  G IP  YV
Sbjct: 2   KVVALYDYTPMNAQDLQLRKGEEYVILEESNLPWWRARDKNGREGYIPSNYV 53

BTK is a cytoplasmic (or nonreceptor) tyr kinase containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. It also contains an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation, and the Tec homology (TH) domain with proline-rich and zinc-binding regions. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212839 cd11906, SH3_BTK, Src Homology 3 domain of Bruton's tyrosine kinase

 Score = 47.1 bits (112), Expect = 2e-07
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 438
           KV+A YD+   +  DL  +K +  +++ +    WW A++ +G  G IP  YV
Sbjct: 2   KVVALYDYTPMNAQDLQLRKGEEYVILEESNLPWWRARDKNGREGYIPSNYV 53

BTK is a cytoplasmic (or nonreceptor) tyr kinase containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. It also contains an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation, and the Tec homology (TH) domain with proline-rich and zinc-binding regions. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212796 cd11862, SH3_MPP, Src Homology 3 domain of Membrane Protein, Palmitoylated (or MAGUK p55 subfamily member) proteins

 Score = 47.2 bits (113), Expect = 3e-07
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 10/55 (18%)

Query: 115 AKYDFDGNDPDDLP-------FKKNDILIVVSKDEEHWWTAQNI---SGEVGSIP 159
           A +D+D  +   +P       FKK DIL +V++D+ +WW A+ +   +G  G IP
Sbjct: 4   ALFDYDPEEDPLIPCKEAGLSFKKGDILQIVNQDDPNWWQARKVGDPNGRAGLIP 58

The MPP/p55 subfamily of MAGUK (membrane-associated guanylate kinase) proteins includes at least eight vertebrate members (MPP1-7 and CASK), four Drosophila proteins (Stardust, Varicose, CASK and Skiff), and other similar proteins; they all contain one each of the core of three domains characteristic of MAGUK proteins: PDZ, SH3, and guanylate kinase (GuK). In addition, most members except for MPP1 contain N-terminal L27 domains and some also contain a Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. CASK has an additional calmodulin-dependent kinase (CaMK)-like domain at the N-terminus. Members of this subfamily are scaffolding proteins that play important roles in regulating and establishing cell polarity, cell adhesion, and synaptic targeting and transmission, among others. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212796 cd11862, SH3_MPP, Src Homology 3 domain of Membrane Protein, Palmitoylated (or MAGUK p55 subfamily member) proteins

 Score = 47.2 bits (113), Expect = 3e-07
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 10/55 (18%)

Query: 390 AKYDFDGNDPDDLP-------FKKNDILIVVSKDEEHWWTAQNI---SGEVGSIP 434
           A +D+D  +   +P       FKK DIL +V++D+ +WW A+ +   +G  G IP
Sbjct: 4   ALFDYDPEEDPLIPCKEAGLSFKKGDILQIVNQDDPNWWQARKVGDPNGRAGLIP 58

The MPP/p55 subfamily of MAGUK (membrane-associated guanylate kinase) proteins includes at least eight vertebrate members (MPP1-7 and CASK), four Drosophila proteins (Stardust, Varicose, CASK and Skiff), and other similar proteins; they all contain one each of the core of three domains characteristic of MAGUK proteins: PDZ, SH3, and guanylate kinase (GuK). In addition, most members except for MPP1 contain N-terminal L27 domains and some also contain a Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. CASK has an additional calmodulin-dependent kinase (CaMK)-like domain at the N-terminus. Members of this subfamily are scaffolding proteins that play important roles in regulating and establishing cell polarity, cell adhesion, and synaptic targeting and transmission, among others. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212720 cd11786, SH3_SH3RF_1, First Src Homology 3 domain of SH3 domain containing ring finger proteins

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 19/50 (38%), Positives = 33/50 (66%), Gaps = 1/50 (2%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           A Y+++G +P DL FKK DI+++  + +E+W+  +  +G+ G  P  YVQ
Sbjct: 4   ALYNYEGKEPGDLSFKKGDIILLRKRIDENWYHGE-CNGKQGFFPASYVQ 52

This model represents the first SH3 domain of SH3RF1 (or POSH), SH3RF2 (or POSHER), SH3RF3 (POSH2), and similar domains. Members of this family are scaffold proteins that function as E3 ubiquitin-protein ligases. They all contain an N-terminal RING finger domain and multiple SH3 domains; SH3RF1 and SH3RF3 have four SH3 domains while SH3RF2 has three. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3RF2 acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212720 cd11786, SH3_SH3RF_1, First Src Homology 3 domain of SH3 domain containing ring finger proteins

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 19/50 (38%), Positives = 33/50 (66%), Gaps = 1/50 (2%)

Query: 390 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
           A Y+++G +P DL FKK DI+++  + +E+W+  +  +G+ G  P  YVQ
Sbjct: 4   ALYNYEGKEPGDLSFKKGDIILLRKRIDENWYHGE-CNGKQGFFPASYVQ 52

This model represents the first SH3 domain of SH3RF1 (or POSH), SH3RF2 (or POSHER), SH3RF3 (POSH2), and similar domains. Members of this family are scaffold proteins that function as E3 ubiquitin-protein ligases. They all contain an N-terminal RING finger domain and multiple SH3 domains; SH3RF1 and SH3RF3 have four SH3 domains while SH3RF2 has three. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3RF2 acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|198178 cd09923, SH2_SOCS_family, Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) family

 Score = 47.6 bits (114), Expect = 4e-07
 Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 3/41 (7%)

Query: 12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCV 52
           WY+G +TR EA+  LL+ K  G FLVRDS+     Y+  V
Sbjct: 1  GWYWGGITRYEAEE-LLAGKPEGTFLVRDSSD--SRYLFSV 38

SH2 domain found in SOCS proteins. SOCS was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. Members (SOCS4-SOCS7) were identified by their conserved SOCS box, an adapter motif of 3 helices that associates substrate binding domains, such as the SOCS SH2 domain, ankryin, and WD40 with ubiquitin ligase components. These show limited cytokine induction. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 81

>gnl|CDD|198178 cd09923, SH2_SOCS_family, Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) family

 Score = 47.6 bits (114), Expect = 4e-07
 Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 3/41 (7%)

Query: 287 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCV 327
            WY+G +TR EA+  LL+ K  G FLVRDS+     Y+  V
Sbjct: 1   GWYWGGITRYEAEE-LLAGKPEGTFLVRDSSD--SRYLFSV 38

SH2 domain found in SOCS proteins. SOCS was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. Members (SOCS4-SOCS7) were identified by their conserved SOCS box, an adapter motif of 3 helices that associates substrate binding domains, such as the SOCS SH2 domain, ankryin, and WD40 with ubiquitin ligase components. These show limited cytokine induction. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 81

>gnl|CDD|212928 cd11995, SH3_Intersectin1_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-1

 Score = 46.5 bits (110), Expect = 4e-07
 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           +VI  YD+   + D+L F K  I+ V++K++  WW  + ++G+VG  P  YV+
Sbjct: 2   QVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGE-LNGQVGLFPSNYVK 53

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212928 cd11995, SH3_Intersectin1_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-1

 Score = 46.5 bits (110), Expect = 4e-07
 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
           +VI  YD+   + D+L F K  I+ V++K++  WW  + ++G+VG  P  YV+
Sbjct: 2   QVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGE-LNGQVGLFPSNYVK 53

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212789 cd11855, SH3_Sho1p, Src homology 3 domain of High osmolarity signaling protein Sho1p

 Score = 46.3 bits (110), Expect = 5e-07
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 112 KVIAKYDFDGN--DPDDLPFKKNDILIVVSKDEE-HWWTAQNISGEVGSIPVPYVQ 164
           +  A Y +D +  DP++L F+K +IL V   D    WW A+  +GE G  P  Y+Q
Sbjct: 1   RARALYPYDASPDDPNELSFEKGEILEV--SDTSGKWWQARKSNGETGICPSNYLQ 54

Sho1p (or Sho1), also called SSU81 (Suppressor of SUA8-1 mutation), is a yeast membrane protein that regulates adaptation to high salt conditions by activating the HOG (high-osmolarity glycerol) pathway. High salt concentrations lead to the localization to the membrane of the MAPKK Pbs2, which is then activated by the MAPKK Ste11 and in turn, activates the MAPK Hog1. Pbs2 is localized to the membrane though the interaction of its PxxP motif with the SH3 domain of Sho1p. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212789 cd11855, SH3_Sho1p, Src homology 3 domain of High osmolarity signaling protein Sho1p

 Score = 46.3 bits (110), Expect = 5e-07
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 387 KVIAKYDFDGN--DPDDLPFKKNDILIVVSKDEE-HWWTAQNISGEVGSIPVPYVQ 439
           +  A Y +D +  DP++L F+K +IL V   D    WW A+  +GE G  P  Y+Q
Sbjct: 1   RARALYPYDASPDDPNELSFEKGEILEV--SDTSGKWWQARKSNGETGICPSNYLQ 54

Sho1p (or Sho1), also called SSU81 (Suppressor of SUA8-1 mutation), is a yeast membrane protein that regulates adaptation to high salt conditions by activating the HOG (high-osmolarity glycerol) pathway. High salt concentrations lead to the localization to the membrane of the MAPKK Pbs2, which is then activated by the MAPKK Ste11 and in turn, activates the MAPK Hog1. Pbs2 is localized to the membrane though the interaction of its PxxP motif with the SH3 domain of Sho1p. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|198229 cd10366, SH2_Src_Yes, Src homology 2 (SH2) domain found in Yes

 Score = 47.7 bits (113), Expect = 6e-07
 Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 9/89 (10%)

Query: 13 WYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKI 66
          WYFG M R++A+ +LL+  +  G FLVR+S T  G Y L +++      + V HY I K+
Sbjct: 5  WYFGKMGRKDAERLLLNPGNQRGIFLVRESETTKGAYSLSIRDWDEVRGDNVKHYKIRKL 64

Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
           N      Y      F  L  L+  Y  H
Sbjct: 65 DNGGY---YITTRAQFDTLQKLVKHYTEH 90

Yes is a member of the Src non-receptor type tyrosine kinase family of proteins. Yes is the cellular homolog of the Yamaguchi sarcoma virus oncogene. In humans it is encoded by the YES1 gene which maps to chromosome 18 and is in close proximity to thymidylate synthase. A corresponding Yes pseudogene has been found on chromosome 22. YES1 has been shown to interact with Janus kinase 2, CTNND1,RPL10, and Occludin. Yes1 has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198229 cd10366, SH2_Src_Yes, Src homology 2 (SH2) domain found in Yes

 Score = 47.7 bits (113), Expect = 6e-07
 Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 9/89 (10%)

Query: 288 WYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKI 341
           WYFG M R++A+ +LL+  +  G FLVR+S T  G Y L +++      + V HY I K+
Sbjct: 5   WYFGKMGRKDAERLLLNPGNQRGIFLVRESETTKGAYSLSIRDWDEVRGDNVKHYKIRKL 64

Query: 342 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 370
            N      Y      F  L  L+  Y  H
Sbjct: 65  DNGGY---YITTRAQFDTLQKLVKHYTEH 90

Yes is a member of the Src non-receptor type tyrosine kinase family of proteins. Yes is the cellular homolog of the Yamaguchi sarcoma virus oncogene. In humans it is encoded by the YES1 gene which maps to chromosome 18 and is in close proximity to thymidylate synthase. A corresponding Yes pseudogene has been found on chromosome 22. YES1 has been shown to interact with Janus kinase 2, CTNND1,RPL10, and Occludin. Yes1 has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198211 cd10348, SH2_Cterm_shark_like, C-terminal Src homology 2 (SH2) domain found in SH2 domains, ANK, and kinase domain (shark) proteins

 Score = 47.0 bits (112), Expect = 7e-07
 Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 6/82 (7%)

Query: 13 WYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 71
          W  G + R EA  IL  + D +G+FLVR S    G YVL +   N V H+ I        
Sbjct: 2  WLHGALDRNEAVEILKQKADADGSFLVRYSRRRPGGYVLTLVYENHVYHFEIQN----RD 57

Query: 72 QTCYKIGD-KTFSDLPSLLAFY 92
             + I D   F  L  L+  Y
Sbjct: 58 DKWFYIDDGPYFESLEHLIEHY 79

These non-receptor protein-tyrosine kinases contain two SH2 domains, five ankyrin (ANK)-like repeats, and a potential tyrosine phosphorylation site in its carboxyl-terminal tail which resembles the phosphorylation site in members of the src family. Like, mammalian non-receptor protein-tyrosine kinases, ZAP-70 and syk proteins, they do not have SH3 domains. However, the presence of ANK makes these unique among protein-tyrosine kinases. Both tyrosine kinases and ANK repeats have been shown to transduce developmental signals, and SH2 domains are known to participate intimately in tyrosine kinase signaling. These tyrosine kinases are believed to be involved in epithelial cell polarity. The members of this family include the shark (SH2 domains, ANK, and kinase domain) gene in Drosophila and yellow fever mosquitos, as well as the hydra protein HTK16. Drosophila Shark is proposed to transduce intracellularly the Crumbs, a protein necessary for proper organization of ectodermal epithelia, intercellular signal. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 86

>gnl|CDD|198211 cd10348, SH2_Cterm_shark_like, C-terminal Src homology 2 (SH2) domain found in SH2 domains, ANK, and kinase domain (shark) proteins

 Score = 47.0 bits (112), Expect = 7e-07
 Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 6/82 (7%)

Query: 288 WYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 346
           W  G + R EA  IL  + D +G+FLVR S    G YVL +   N V H+ I        
Sbjct: 2   WLHGALDRNEAVEILKQKADADGSFLVRYSRRRPGGYVLTLVYENHVYHFEIQN----RD 57

Query: 347 QTCYKIGD-KTFSDLPSLLAFY 367
              + I D   F  L  L+  Y
Sbjct: 58  DKWFYIDDGPYFESLEHLIEHY 79

These non-receptor protein-tyrosine kinases contain two SH2 domains, five ankyrin (ANK)-like repeats, and a potential tyrosine phosphorylation site in its carboxyl-terminal tail which resembles the phosphorylation site in members of the src family. Like, mammalian non-receptor protein-tyrosine kinases, ZAP-70 and syk proteins, they do not have SH3 domains. However, the presence of ANK makes these unique among protein-tyrosine kinases. Both tyrosine kinases and ANK repeats have been shown to transduce developmental signals, and SH2 domains are known to participate intimately in tyrosine kinase signaling. These tyrosine kinases are believed to be involved in epithelial cell polarity. The members of this family include the shark (SH2 domains, ANK, and kinase domain) gene in Drosophila and yellow fever mosquitos, as well as the hydra protein HTK16. Drosophila Shark is proposed to transduce intracellularly the Crumbs, a protein necessary for proper organization of ectodermal epithelia, intercellular signal. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 86

>gnl|CDD|198216 cd10353, SH2_Nterm_RasGAP, N-terminal Src homology 2 (SH2) domain found in Ras GTPase-activating protein 1 (GAP)

 Score = 47.5 bits (113), Expect = 7e-07
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 5/82 (6%)

Query: 11 NSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTE 70
          N WY G + R  A+  L      G++L+R+S+   G++VL       V+H+ I  +    
Sbjct: 19 NQWYHGRLDRTIAEERLRQAGKLGSYLIRESDRRPGSFVLSFLSRTGVNHFRIIAMCGD- 77

Query: 71 QQTCYKIGDKTFSDLPSLLAFY 92
              Y IG + FS L  L+ +Y
Sbjct: 78 ----YYIGGRRFSSLSDLIGYY 95

RasGAP is part of the GAP1 family of GTPase-activating proteins. The protein is located in the cytoplasm and stimulates the GTPase activity of normal RAS p21, but not its oncogenic counterpart. Acting as a suppressor of RAS function, the protein enhances the weak intrinsic GTPase activity of RAS proteins resulting in RAS inactivation, thereby allowing control of cellular proliferation and differentiation. Mutations leading to changes in the binding sites of either protein are associated with basal cell carcinomas. Alternative splicing results in two isoforms. The shorter isoform which lacks the N-terminal hydrophobic region, has the same activity, and is expressed in placental tissues. In general the longer isoform contains 2 SH2 domains, a SH3 domain, a pleckstrin homology (PH) domain, and a calcium-dependent phospholipid-binding C2 domain. The C-terminus contains the catalytic domain of RasGap which catalyzes the activation of Ras by hydrolyzing GTP-bound active Ras into an inactive GDP-bound form of Ras. This model contains the N-terminal SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|198216 cd10353, SH2_Nterm_RasGAP, N-terminal Src homology 2 (SH2) domain found in Ras GTPase-activating protein 1 (GAP)

 Score = 47.5 bits (113), Expect = 7e-07
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 5/82 (6%)

Query: 286 NSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTE 345
           N WY G + R  A+  L      G++L+R+S+   G++VL       V+H+ I  +    
Sbjct: 19  NQWYHGRLDRTIAEERLRQAGKLGSYLIRESDRRPGSFVLSFLSRTGVNHFRIIAMCGD- 77

Query: 346 QQTCYKIGDKTFSDLPSLLAFY 367
               Y IG + FS L  L+ +Y
Sbjct: 78  ----YYIGGRRFSSLSDLIGYY 95

RasGAP is part of the GAP1 family of GTPase-activating proteins. The protein is located in the cytoplasm and stimulates the GTPase activity of normal RAS p21, but not its oncogenic counterpart. Acting as a suppressor of RAS function, the protein enhances the weak intrinsic GTPase activity of RAS proteins resulting in RAS inactivation, thereby allowing control of cellular proliferation and differentiation. Mutations leading to changes in the binding sites of either protein are associated with basal cell carcinomas. Alternative splicing results in two isoforms. The shorter isoform which lacks the N-terminal hydrophobic region, has the same activity, and is expressed in placental tissues. In general the longer isoform contains 2 SH2 domains, a SH3 domain, a pleckstrin homology (PH) domain, and a calcium-dependent phospholipid-binding C2 domain. The C-terminus contains the catalytic domain of RasGap which catalyzes the activation of Ras by hydrolyzing GTP-bound active Ras into an inactive GDP-bound form of Ras. This model contains the N-terminal SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|212942 cd12009, SH3_Blk, Src homology 3 domain of Blk Protein Tyrosine Kinase

 Score = 46.0 bits (109), Expect = 8e-07
 Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 2/52 (3%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
           VIA+YDF  ++  DL  KK + L V+  D E WW A+++ +G+ G IP  YV
Sbjct: 2   VIAQYDFVPSNERDLQLKKGEKLQVLKSDGE-WWLAKSLTTGKEGYIPSNYV 52

Blk is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. It is expressed specifically in B-cells and is involved in pre-BCR (B-cell receptor) signaling. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212942 cd12009, SH3_Blk, Src homology 3 domain of Blk Protein Tyrosine Kinase

 Score = 46.0 bits (109), Expect = 8e-07
 Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 2/52 (3%)

Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 438
           VIA+YDF  ++  DL  KK + L V+  D E WW A+++ +G+ G IP  YV
Sbjct: 2   VIAQYDFVPSNERDLQLKKGEKLQVLKSDGE-WWLAKSLTTGKEGYIPSNYV 52

Blk is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. It is expressed specifically in B-cells and is involved in pre-BCR (B-cell receptor) signaling. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212758 cd11824, SH3_PSTPIP1, Src homology 3 domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1

 Score = 45.8 bits (109), Expect = 8e-07
 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           K    YD+   + D+L   K D++ V+ K E+ WWT +  +G+ G +P  Y++K
Sbjct: 1   KYSVLYDYTAQEDDELSISKGDVVAVIEKGEDGWWTVER-NGQKGLVPGTYLEK 53

PSTPIP1, also called CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212758 cd11824, SH3_PSTPIP1, Src homology 3 domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1

 Score = 45.8 bits (109), Expect = 8e-07
 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 440
           K    YD+   + D+L   K D++ V+ K E+ WWT +  +G+ G +P  Y++K
Sbjct: 1   KYSVLYDYTAQEDDELSISKGDVVAVIEKGEDGWWTVER-NGQKGLVPGTYLEK 53

PSTPIP1, also called CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212756 cd11822, SH3_SASH_like, Src homology 3 domain of SAM And SH3 Domain Containing Proteins

 Score = 45.7 bits (108), Expect = 9e-07
 Identities = 21/51 (41%), Positives = 28/51 (54%)

Query: 208 ARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTH 258
           A+V     P+ YD  +LKL+ GDII +      G W G LN K G+F F +
Sbjct: 2   AKVHTDFTPSPYDTDSLKLKKGDIIDIINKPPMGIWTGMLNNKVGNFKFIY 52

This subfamily, also called the SLY family, is composed of SAM And SH3 Domain Containing Protein 1 (SASH1), SASH2, SASH3, and similar proteins. These are adaptor proteins containing a central conserved region with a bipartite nuclear localization signal (NLS) as wells as SAM (sterile alpha motif) and SH3 domains. SASH1 is a potential tumor suppressor in breast and colon cancer. It is widely expressed in normal tissues (except lymphocytes and dendritic cells) and is localized in the nucleus and the cytoplasm. SASH1 interacts with the oncoprotein cortactin and is important in cell migration and adhesion. SASH2 (also called SAMSN-1, SLY2, HACS1 or NASH1) and SASH3 (also called SLY/SLY1) are expressed mainly in hematopoietic cells, although SASH2 is also found in endothelial cells as well as myeloid leukemias and myeloma. SASH2 was found to be differentially expressed in malignant haematopoietic cells and in colorectal tumors, and is a potential tumor suppressor in lung cancer. SASH3 is essential in the full activation of adaptive immunity and is involved in the signaling of T cell receptors. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212756 cd11822, SH3_SASH_like, Src homology 3 domain of SAM And SH3 Domain Containing Proteins

 Score = 45.7 bits (108), Expect = 9e-07
 Identities = 21/51 (41%), Positives = 28/51 (54%)

Query: 483 ARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTH 533
           A+V     P+ YD  +LKL+ GDII +      G W G LN K G+F F +
Sbjct: 2   AKVHTDFTPSPYDTDSLKLKKGDIIDIINKPPMGIWTGMLNNKVGNFKFIY 52

This subfamily, also called the SLY family, is composed of SAM And SH3 Domain Containing Protein 1 (SASH1), SASH2, SASH3, and similar proteins. These are adaptor proteins containing a central conserved region with a bipartite nuclear localization signal (NLS) as wells as SAM (sterile alpha motif) and SH3 domains. SASH1 is a potential tumor suppressor in breast and colon cancer. It is widely expressed in normal tissues (except lymphocytes and dendritic cells) and is localized in the nucleus and the cytoplasm. SASH1 interacts with the oncoprotein cortactin and is important in cell migration and adhesion. SASH2 (also called SAMSN-1, SLY2, HACS1 or NASH1) and SASH3 (also called SLY/SLY1) are expressed mainly in hematopoietic cells, although SASH2 is also found in endothelial cells as well as myeloid leukemias and myeloma. SASH2 was found to be differentially expressed in malignant haematopoietic cells and in colorectal tumors, and is a potential tumor suppressor in lung cancer. SASH3 is essential in the full activation of adaptive immunity and is involved in the signaling of T cell receptors. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|198203 cd10340, SH2_N-SH2_SHP_like, N-terminal Src homology 2 (N-SH2) domain found in SH2 domain Phosphatases (SHP) proteins

 Score = 47.0 bits (112), Expect = 9e-07
 Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 6/81 (7%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
          W+  +++  EA+ +L +   +G+FL R S +  G++ L V+  ++V+H    KI NT   
Sbjct: 2  WFHPVISGIEAENLLKTRGVDGSFLARPSKSNPGDFTLSVRRGDEVTHI---KIQNTGD- 57

Query: 73 TCYK-IGDKTFSDLPSLLAFY 92
            Y   G + F+ L  L+ +Y
Sbjct: 58 -YYDLYGGEKFATLSELVQYY 77

The SH2 domain phosphatases (SHP-1, SHP-2/Syp, Drosophila corkscrew (csw), and Caenorhabditis elegans Protein Tyrosine Phosphatase (Ptp-2)) are cytoplasmic signaling enzymes. They are both targeted and regulated by interactions of their SH2 domains with phosphotyrosine docking sites. These proteins contain two SH2 domains (N-SH2, C-SH2) followed by a tyrosine phosphatase (PTP) domain, and a C-terminal extension. Shp1 and Shp2 have two tyrosyl phosphorylation sites in their C-tails, which are phosphorylated differentially by receptor and nonreceptor PTKs. Csw retains the proximal tyrosine and Ptp-2 lacks both sites. Shp-binding proteins include receptors, scaffolding adapters, and inhibitory receptors. Some of these bind both Shp1 and Shp2 while others bind only one. Most proteins that bind a Shp SH2 domain contain one or more immuno-receptor tyrosine-based inhibitory motifs (ITIMs): [IVL]xpYxx[IVL]. Shp1 N-SH2 domain blocks the catalytic domain and keeps the enzyme in the inactive conformation, and is thus believed to regulate the phosphatase activity of SHP-1. Its C-SH2 domain is thought to be involved in searching for phosphotyrosine activators. The SHP2 N-SH2 domain is a conformational switch; it either binds and inhibits the phosphatase, or it binds phosphoproteins and activates the enzyme. The C-SH2 domain contributes binding energy and specificity, but it does not have a direct role in activation. Csw SH2 domain function is essential, but either SH2 domain can fulfill this requirement. The role of the csw SH2 domains during Sevenless receptor tyrosine kinase (SEV) signaling is to bind Daughter of Sevenless rather than activated SEV. Ptp-2 acts in oocytes downstream of sheath/oocyte gap junctions to promote major sperm protein (MSP)-induced MAP Kinase (MPK-1) phosphorylation. Ptp-2 functions in the oocyte cytoplasm, not at the cell surface to inhibit multiple RasGAPs, resulting in sustained Ras activation. It is thought that MSP triggers PTP-2/Ras activation and ROS production to stimulate MPK-1 activity essential for oocyte maturation and that secreted MSP domains and Cu/Zn superoxide dismutases function antagonistically to control ROS and MAPK signaling. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 99

>gnl|CDD|198203 cd10340, SH2_N-SH2_SHP_like, N-terminal Src homology 2 (N-SH2) domain found in SH2 domain Phosphatases (SHP) proteins

 Score = 47.0 bits (112), Expect = 9e-07
 Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 6/81 (7%)

Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 347
           W+  +++  EA+ +L +   +G+FL R S +  G++ L V+  ++V+H    KI NT   
Sbjct: 2   WFHPVISGIEAENLLKTRGVDGSFLARPSKSNPGDFTLSVRRGDEVTHI---KIQNTGD- 57

Query: 348 TCYK-IGDKTFSDLPSLLAFY 367
             Y   G + F+ L  L+ +Y
Sbjct: 58  -YYDLYGGEKFATLSELVQYY 77

The SH2 domain phosphatases (SHP-1, SHP-2/Syp, Drosophila corkscrew (csw), and Caenorhabditis elegans Protein Tyrosine Phosphatase (Ptp-2)) are cytoplasmic signaling enzymes. They are both targeted and regulated by interactions of their SH2 domains with phosphotyrosine docking sites. These proteins contain two SH2 domains (N-SH2, C-SH2) followed by a tyrosine phosphatase (PTP) domain, and a C-terminal extension. Shp1 and Shp2 have two tyrosyl phosphorylation sites in their C-tails, which are phosphorylated differentially by receptor and nonreceptor PTKs. Csw retains the proximal tyrosine and Ptp-2 lacks both sites. Shp-binding proteins include receptors, scaffolding adapters, and inhibitory receptors. Some of these bind both Shp1 and Shp2 while others bind only one. Most proteins that bind a Shp SH2 domain contain one or more immuno-receptor tyrosine-based inhibitory motifs (ITIMs): [IVL]xpYxx[IVL]. Shp1 N-SH2 domain blocks the catalytic domain and keeps the enzyme in the inactive conformation, and is thus believed to regulate the phosphatase activity of SHP-1. Its C-SH2 domain is thought to be involved in searching for phosphotyrosine activators. The SHP2 N-SH2 domain is a conformational switch; it either binds and inhibits the phosphatase, or it binds phosphoproteins and activates the enzyme. The C-SH2 domain contributes binding energy and specificity, but it does not have a direct role in activation. Csw SH2 domain function is essential, but either SH2 domain can fulfill this requirement. The role of the csw SH2 domains during Sevenless receptor tyrosine kinase (SEV) signaling is to bind Daughter of Sevenless rather than activated SEV. Ptp-2 acts in oocytes downstream of sheath/oocyte gap junctions to promote major sperm protein (MSP)-induced MAP Kinase (MPK-1) phosphorylation. Ptp-2 functions in the oocyte cytoplasm, not at the cell surface to inhibit multiple RasGAPs, resulting in sustained Ras activation. It is thought that MSP triggers PTP-2/Ras activation and ROS production to stimulate MPK-1 activity essential for oocyte maturation and that secreted MSP domains and Cu/Zn superoxide dismutases function antagonistically to control ROS and MAPK signaling. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 99

>gnl|CDD|212816 cd11883, SH3_Sdc25, Src Homology 3 domain of Sdc25/Cdc25 guanine nucleotide exchange factors

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWW 146
           V+A YDF     + L FK  DI+ V++KD   WW
Sbjct: 2   VVALYDFTPKSKNQLSFKAGDIIYVLNKDPSGWW 35

This subfamily is composed of the Saccharomyces cerevisiae guanine nucleotide exchange factors (GEFs) Sdc25 and Cdc25, and similar proteins. These GEFs regulate Ras by stimulating the GDP/GTP exchange on Ras. Cdc25 is involved in the Ras/PKA pathway that plays an important role in the regulation of metabolism, stress responses, and proliferation, depending on available nutrients and conditions. Proteins in this subfamily contain an N-terminal SH3 domain as well as REM (Ras exchanger motif) and RasGEF domains at the C-terminus. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 55

>gnl|CDD|212816 cd11883, SH3_Sdc25, Src Homology 3 domain of Sdc25/Cdc25 guanine nucleotide exchange factors

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWW 421
           V+A YDF     + L FK  DI+ V++KD   WW
Sbjct: 2   VVALYDFTPKSKNQLSFKAGDIIYVLNKDPSGWW 35

This subfamily is composed of the Saccharomyces cerevisiae guanine nucleotide exchange factors (GEFs) Sdc25 and Cdc25, and similar proteins. These GEFs regulate Ras by stimulating the GDP/GTP exchange on Ras. Cdc25 is involved in the Ras/PKA pathway that plays an important role in the regulation of metabolism, stress responses, and proliferation, depending on available nutrients and conditions. Proteins in this subfamily contain an N-terminal SH3 domain as well as REM (Ras exchanger motif) and RasGEF domains at the C-terminus. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 55

>gnl|CDD|212929 cd11996, SH3_Intersectin2_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-2

 Score = 45.4 bits (107), Expect = 1e-06
 Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           +VIA YD+  N+ D+L F K  ++ V++KD+  WW  + I+G  G  P  YV+
Sbjct: 2   QVIAMYDYTANNEDELSFSKGQLINVLNKDDPDWWQGE-INGVTGLFPSNYVK 53

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN2 is expected to bind protein partners, similar to ITSN1 which has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212929 cd11996, SH3_Intersectin2_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-2

 Score = 45.4 bits (107), Expect = 1e-06
 Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
           +VIA YD+  N+ D+L F K  ++ V++KD+  WW  + I+G  G  P  YV+
Sbjct: 2   QVIAMYDYTANNEDELSFSKGQLINVLNKDDPDWWQGE-INGVTGLFPSNYVK 53

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN2 is expected to bind protein partners, similar to ITSN1 which has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|198264 cd10401, SH2_C-SH2_Syk_like, C-terminal Src homology 2 (SH2) domain found in Spleen tyrosine kinase (Syk) proteins

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 6/56 (10%)

Query: 13 WYFGMMTRQEAQAILLS-EKDNGAFLV--RDSNTILGNYVLCVKENNKVSHYIINK 65
          W+ G ++R+E++ ILL   K NG FL+  RD+N   G+Y LC+  + KV HY I+K
Sbjct: 5  WFHGKISREESEQILLIGSKTNGKFLIRERDNN---GSYALCLLHDGKVLHYRIDK 57

ZAP-70 and Syk comprise a family of hematopoietic cell specific protein tyrosine kinases (PTKs) that are required for antigen and antibody receptor function. ZAP-70 is expressed in T and natural killer (NK) cells and Syk is expressed in B cells, mast cells, polymorphonuclear leukocytes, platelets, macrophages, and immature T cells. They are required for the proper development of T and B cells, immune receptors, and activating NK cells. They consist of two N-terminal Src homology 2 (SH2) domains and a C-terminal kinase domain separated from the SH2 domains by a linker or hinge region. Phosphorylation of both tyrosine residues within the Immunoreceptor Tyrosine-based Activation Motifs (ITAM; consensus sequence Yxx[LI]x(7,8)Yxx[LI]) by the Src-family PTKs is required for efficient interaction of ZAP-70 and Syk with the receptor subunits and for receptor function. ZAP-70 forms two phosphotyrosine binding pockets, one of which is shared by both SH2 domains. In Syk the two SH2 domains do not form such a phosphotyrosine-binding site. The SH2 domains here are believed to function independently. In addition, the two SH2 domains of Syk display flexibility in their relative orientation, allowing Syk to accommodate a greater variety of spacing sequences between the ITAM phosphotyrosines and singly phosphorylated non-classical ITAM ligands. This model contains the C-terminus SH2 domains of Syk. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 99

>gnl|CDD|198264 cd10401, SH2_C-SH2_Syk_like, C-terminal Src homology 2 (SH2) domain found in Spleen tyrosine kinase (Syk) proteins

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 6/56 (10%)

Query: 288 WYFGMMTRQEAQAILLS-EKDNGAFLV--RDSNTILGNYVLCVKENNKVSHYIINK 340
           W+ G ++R+E++ ILL   K NG FL+  RD+N   G+Y LC+  + KV HY I+K
Sbjct: 5   WFHGKISREESEQILLIGSKTNGKFLIRERDNN---GSYALCLLHDGKVLHYRIDK 57

ZAP-70 and Syk comprise a family of hematopoietic cell specific protein tyrosine kinases (PTKs) that are required for antigen and antibody receptor function. ZAP-70 is expressed in T and natural killer (NK) cells and Syk is expressed in B cells, mast cells, polymorphonuclear leukocytes, platelets, macrophages, and immature T cells. They are required for the proper development of T and B cells, immune receptors, and activating NK cells. They consist of two N-terminal Src homology 2 (SH2) domains and a C-terminal kinase domain separated from the SH2 domains by a linker or hinge region. Phosphorylation of both tyrosine residues within the Immunoreceptor Tyrosine-based Activation Motifs (ITAM; consensus sequence Yxx[LI]x(7,8)Yxx[LI]) by the Src-family PTKs is required for efficient interaction of ZAP-70 and Syk with the receptor subunits and for receptor function. ZAP-70 forms two phosphotyrosine binding pockets, one of which is shared by both SH2 domains. In Syk the two SH2 domains do not form such a phosphotyrosine-binding site. The SH2 domains here are believed to function independently. In addition, the two SH2 domains of Syk display flexibility in their relative orientation, allowing Syk to accommodate a greater variety of spacing sequences between the ITAM phosphotyrosines and singly phosphorylated non-classical ITAM ligands. This model contains the C-terminus SH2 domains of Syk. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 99

>gnl|CDD|212746 cd11812, SH3_AHI-1, Src Homology 3 domain of Abelson helper integration site-1 (AHI-1)

 Score = 45.2 bits (107), Expect = 1e-06
 Identities = 19/51 (37%), Positives = 30/51 (58%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
           V+A YD+  N  D+L   + DI+ V+ KD ++WW    ++G+ G  P  YV
Sbjct: 2   VVALYDYTANRSDELTIHRGDIIRVLYKDNDNWWFGSLVNGQQGYFPANYV 52

AHI-1, also called Jouberin, is expressed in high levels in the brain, gonad tissues, and skeletal muscle. It is an adaptor protein that interacts with the small GTPase Rab8a and regulates it distribution and function, affecting cilium formation and vesicle transport. Mutations in the AHI-1 gene can cause Joubert syndrome, a disorder characterized by brainstem malformations, cerebellar aplasia/hypoplasia, and retinal dystrophy. AHI-1 variation is also associated with susceptibility to schizophrenia and type 2 diabetes mellitus progression. AHI-1 contains WD40 and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212746 cd11812, SH3_AHI-1, Src Homology 3 domain of Abelson helper integration site-1 (AHI-1)

 Score = 45.2 bits (107), Expect = 1e-06
 Identities = 19/51 (37%), Positives = 30/51 (58%)

Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 438
           V+A YD+  N  D+L   + DI+ V+ KD ++WW    ++G+ G  P  YV
Sbjct: 2   VVALYDYTANRSDELTIHRGDIIRVLYKDNDNWWFGSLVNGQQGYFPANYV 52

AHI-1, also called Jouberin, is expressed in high levels in the brain, gonad tissues, and skeletal muscle. It is an adaptor protein that interacts with the small GTPase Rab8a and regulates it distribution and function, affecting cilium formation and vesicle transport. Mutations in the AHI-1 gene can cause Joubert syndrome, a disorder characterized by brainstem malformations, cerebellar aplasia/hypoplasia, and retinal dystrophy. AHI-1 variation is also associated with susceptibility to schizophrenia and type 2 diabetes mellitus progression. AHI-1 contains WD40 and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212840 cd11907, SH3_TXK, Src Homology 3 domain of TXK, also called Resting lymphocyte kinase (Rlk)

 Score = 44.9 bits (106), Expect = 2e-06
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
           +V A YDF   +P +L  K+ +  +++ + + HWW A++  G  G IP  YV
Sbjct: 2   QVKALYDFLPREPSNLALKRAEEYLILEQYDPHWWKARDRYGNEGLIPSNYV 53

TXK is a cytoplasmic (or nonreceptor) tyr kinase containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. It also contains an N-terminal cysteine-rich region. Rlk is expressed in T-cells and mast cell lines, and is a key component of T-cell receptor (TCR) signaling. It is important in TCR-stimulated proliferation, IL-2 production and phospholipase C-gamma1 activation. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212840 cd11907, SH3_TXK, Src Homology 3 domain of TXK, also called Resting lymphocyte kinase (Rlk)

 Score = 44.9 bits (106), Expect = 2e-06
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 438
           +V A YDF   +P +L  K+ +  +++ + + HWW A++  G  G IP  YV
Sbjct: 2   QVKALYDFLPREPSNLALKRAEEYLILEQYDPHWWKARDRYGNEGLIPSNYV 53

TXK is a cytoplasmic (or nonreceptor) tyr kinase containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. It also contains an N-terminal cysteine-rich region. Rlk is expressed in T-cells and mast cell lines, and is a key component of T-cell receptor (TCR) signaling. It is important in TCR-stimulated proliferation, IL-2 production and phospholipase C-gamma1 activation. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|198272 cd10409, SH2_Nck2, Src homology 2 (SH2) domain found in Nck

 Score = 46.2 bits (109), Expect = 2e-06
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 5/81 (6%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
          WY+G +TR +A+  L      G FL+RDS +   ++ + +K   K  H+ +  + N    
Sbjct: 3  WYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKAVGKNKHFKVQLVDNV--- 59

Query: 73 TCYKIGDKTFSDLPSLLAFYK 93
            Y IG + F+ +  L+  YK
Sbjct: 60 --YCIGQRRFNSMDELVEHYK 78

Nck proteins are adaptors that modulate actin cytoskeleton dynamics by linking proline-rich effector molecules to tyrosine kinases or phosphorylated signaling intermediates. There are two members known in this family: Nck1 (Nckalpha) and Nck2 (Nckbeta and Growth factor receptor-bound protein 4 (Grb4)). They are characterized by having 3 SH3 domains and a C-terminal SH2 domain. Nck1 and Nck2 have overlapping functions as determined by gene knockouts. Both bind receptor tyrosine kinases and other tyrosine-phosphorylated proteins through their SH2 domains. In addition they also bind distinct targets. Neuronal signaling proteins: EphrinB1, EphrinB2, and Disabled-1 (Dab-1) all bind to Nck-2 exclusively. And in the case of PDGFR, Tyr(P)751 binds to Nck1 while Tyr(P)1009 binds to Nck2. Nck1 and Nck2 have a role in the infection process of enteropathogenic Escherichia coli (EPEC). Their SH3 domains are involved in recruiting and activating the N-WASP/Arp2/3 complex inducing actin polymerization resulting in the production of pedestals, dynamic bacteria-presenting protrusions of the plasma membrane. A similar thing occurs in the vaccinia virus where motile plasma membrane projections are formed beneath the virus. Recently it has been shown that the SH2 domains of both Nck1 and Nck2 bind the G-protein coupled receptor kinase-interacting protein 1 (GIT1) in a phosphorylation-dependent manner. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 98

>gnl|CDD|198272 cd10409, SH2_Nck2, Src homology 2 (SH2) domain found in Nck

 Score = 46.2 bits (109), Expect = 2e-06
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 5/81 (6%)

Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 347
           WY+G +TR +A+  L      G FL+RDS +   ++ + +K   K  H+ +  + N    
Sbjct: 3   WYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKAVGKNKHFKVQLVDNV--- 59

Query: 348 TCYKIGDKTFSDLPSLLAFYK 368
             Y IG + F+ +  L+  YK
Sbjct: 60  --YCIGQRRFNSMDELVEHYK 78

Nck proteins are adaptors that modulate actin cytoskeleton dynamics by linking proline-rich effector molecules to tyrosine kinases or phosphorylated signaling intermediates. There are two members known in this family: Nck1 (Nckalpha) and Nck2 (Nckbeta and Growth factor receptor-bound protein 4 (Grb4)). They are characterized by having 3 SH3 domains and a C-terminal SH2 domain. Nck1 and Nck2 have overlapping functions as determined by gene knockouts. Both bind receptor tyrosine kinases and other tyrosine-phosphorylated proteins through their SH2 domains. In addition they also bind distinct targets. Neuronal signaling proteins: EphrinB1, EphrinB2, and Disabled-1 (Dab-1) all bind to Nck-2 exclusively. And in the case of PDGFR, Tyr(P)751 binds to Nck1 while Tyr(P)1009 binds to Nck2. Nck1 and Nck2 have a role in the infection process of enteropathogenic Escherichia coli (EPEC). Their SH3 domains are involved in recruiting and activating the N-WASP/Arp2/3 complex inducing actin polymerization resulting in the production of pedestals, dynamic bacteria-presenting protrusions of the plasma membrane. A similar thing occurs in the vaccinia virus where motile plasma membrane projections are formed beneath the virus. Recently it has been shown that the SH2 domains of both Nck1 and Nck2 bind the G-protein coupled receptor kinase-interacting protein 1 (GIT1) in a phosphorylation-dependent manner. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 98

>gnl|CDD|199830 cd10349, SH2_SH2D2A_SH2D7, Src homology 2 domain found in the SH2 domain containing protein 2A and 7 (SH2D2A and SH2D7)

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 8/82 (9%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
          W+ G +TR+EA+  LL  K  G +LVR S + +  +VL  +      H+++ ++ +    
Sbjct: 2  WFHGFITRREAER-LLEPKPQGCYLVRFSESAVT-FVLSYRSRTCCRHFLLAQLRD---- 55

Query: 73 TCYKI-GDKT-FSDLPSLLAFY 92
            + + G+ +  + L  LL  Y
Sbjct: 56 GRHVVLGEDSAHARLQDLLLHY 77

SH2D2A and SH7 both contain a single SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 77

>gnl|CDD|199830 cd10349, SH2_SH2D2A_SH2D7, Src homology 2 domain found in the SH2 domain containing protein 2A and 7 (SH2D2A and SH2D7)

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 8/82 (9%)

Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 347
           W+ G +TR+EA+  LL  K  G +LVR S + +  +VL  +      H+++ ++ +    
Sbjct: 2   WFHGFITRREAER-LLEPKPQGCYLVRFSESAVT-FVLSYRSRTCCRHFLLAQLRD---- 55

Query: 348 TCYKI-GDKT-FSDLPSLLAFY 367
             + + G+ +  + L  LL  Y
Sbjct: 56  GRHVVLGEDSAHARLQDLLLHY 77

SH2D2A and SH7 both contain a single SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 77

>gnl|CDD|212706 cd11772, SH3_OSTF1, Src Homology 3 domain of metazoan osteoclast stimulating factor 1

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
           A YD++   PD+L F++ D+L +  K + +WW A    G+ G IP  YV
Sbjct: 4   ALYDYEAQHPDELSFEEGDLLYISDKSDPNWWKAT-CGGKTGLIPSNYV 51

OSTF1, also named OSF or SH3P2, is a signaling protein containing SH3 and ankyrin-repeat domains. It acts through a Src-related pathway to enhance the formation of osteoclasts and bone resorption. It also acts as a negative regulator of cell motility. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212706 cd11772, SH3_OSTF1, Src Homology 3 domain of metazoan osteoclast stimulating factor 1

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 390 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 438
           A YD++   PD+L F++ D+L +  K + +WW A    G+ G IP  YV
Sbjct: 4   ALYDYEAQHPDELSFEEGDLLYISDKSDPNWWKAT-CGGKTGLIPSNYV 51

OSTF1, also named OSF or SH3P2, is a signaling protein containing SH3 and ankyrin-repeat domains. It acts through a Src-related pathway to enhance the formation of osteoclasts and bone resorption. It also acts as a negative regulator of cell motility. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212709 cd11775, SH3_Sla1p_3, Third Src Homology 3 domain of the fungal endocytic adaptor protein Sla1p

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH-WWTAQNIS-GEVGSIPVPYVQ 164
           ++    YDFD    D+L  K+ D++ ++   +   WW  +N+S G+ G +P  Y++
Sbjct: 1   KRGKVLYDFDAQSDDELTVKEGDVVYILDDKKSKDWWMVENVSTGKEGVVPASYIE 56

Sla1p facilitates endocytosis by playing a role as an adaptor protein in coupling components of the actin cytoskeleton to the endocytic machinery. It interacts with Abp1p, Las17p and Pan1p, which are activator proteins of actin-related protein 2/3 (Arp2/3). Sla1p contains multiple domains including three SH3 domains, a SAM (sterile alpha motif) domain, and a Sla1 homology domain 1 (SHD1), which binds to the NPFXD motif that is found in many integral membrane proteins such as the Golgi-localized Arf-binding protein Lsb5p and the P4-ATPases, Drs2p and Dnf1p. The third SH3 domain of Sla1p can bind ubiquitin while retaining the ability to bind proline-rich ligands; monoubiquitination of target proteins signals internalization and sorting through the endocytic pathway. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212709 cd11775, SH3_Sla1p_3, Third Src Homology 3 domain of the fungal endocytic adaptor protein Sla1p

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH-WWTAQNIS-GEVGSIPVPYVQ 439
           ++    YDFD    D+L  K+ D++ ++   +   WW  +N+S G+ G +P  Y++
Sbjct: 1   KRGKVLYDFDAQSDDELTVKEGDVVYILDDKKSKDWWMVENVSTGKEGVVPASYIE 56

Sla1p facilitates endocytosis by playing a role as an adaptor protein in coupling components of the actin cytoskeleton to the endocytic machinery. It interacts with Abp1p, Las17p and Pan1p, which are activator proteins of actin-related protein 2/3 (Arp2/3). Sla1p contains multiple domains including three SH3 domains, a SAM (sterile alpha motif) domain, and a Sla1 homology domain 1 (SHD1), which binds to the NPFXD motif that is found in many integral membrane proteins such as the Golgi-localized Arf-binding protein Lsb5p and the P4-ATPases, Drs2p and Dnf1p. The third SH3 domain of Sla1p can bind ubiquitin while retaining the ability to bind proline-rich ligands; monoubiquitination of target proteins signals internalization and sorting through the endocytic pathway. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|198268 cd10405, SH2_Vav1, Src homology 2 (SH2) domain found in the Vav1 proteins

 Score = 46.2 bits (109), Expect = 2e-06
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 7/86 (8%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
          WY G M R  A++IL +  D G +LVR        + + +K N +V H  I        +
Sbjct: 7  WYAGPMERAGAESILANRSD-GTYLVRQRVKDAAEFAISIKYNVEVKHIKI-----MTAE 60

Query: 73 TCYKIGD-KTFSDLPSLLAFYKVHYL 97
            Y+I + K F  L  L+ FY+ + L
Sbjct: 61 GLYRITEKKAFRGLTELVEFYQQNSL 86

Proto-oncogene vav is a member of the Dbl family of guanine nucleotide exchange factors (GEF) for the Rho family of GTP binding proteins. All vavs are activated by tyrosine phosphorylation leading to their activation. There are three Vav mammalian family members: Vav1 which is expressed in the hematopoietic system, and Vav2 and Vav3 are more ubiquitously expressed. Vav1 plays a role in T-cell and B-cell development and activation. It has been identified as the specific binding partner of Nef proteins from HIV-1, resulting in morphological changes, cytoskeletal rearrangements, and the JNK/SAPK signaling cascade, leading to increased levels of viral transcription and replication. Vav1 has been shown to interact with Ku70, PLCG1, Lymphocyte cytosolic protein 2, Janus kinase 2, SIAH2, S100B, Abl gene, ARHGDIB, SHB, PIK3R1, PRKCQ, Grb2, MAPK1, Syk, Linker of activated T cells, Cbl gene and EZH2. Vav proteins are involved in several processes that require cytoskeletal reorganization, such as the formation of the immunological synapse (IS), phagocytosis, platelet aggregation, spreading, and transformation. Vavs function as guanine nucleotide exchange factors (GEFs) for the Rho/Rac family of GTPases. Vav family members have several conserved motifs/domains including: a leucine-rich region, a leucine-zipper, a calponin homology (CH) domain, an acidic domain, a Dbl-homology (DH) domain, a pleckstrin homology (PH) domain, a cysteine-rich domain, 2 SH3 domains, a proline-rich region, and a SH2 domain. Vavs are the only known Rho GEFs that have both the DH/PH motifs and SH2/SH3 domains in the same protein. The leucine-rich helix-loop-helix (HLH) domain is thought to be involved in protein heterodimerization with other HLH proteins and it may function as a negative regulator by forming inactive heterodimers. The CH domain is usually involved in the association with filamentous actin, but in Vav it controls NFAT stimulation, Ca2+ mobilization, and its transforming activity. Acidic domains are involved in protein-protein interactions and contain regulatory tyrosines. The DH domain is a GDP-GTP exchange factor on Rho/Rac GTPases. The PH domain in involved in interactions with GTP-binding proteins, lipids and/or phosphorylated serine/threonine residues. The SH3 domain is involved in localization of proteins to specific sites within the cell interacting with protein with proline-rich sequences. The SH2 domain mediates a high affinity interaction with tyrosine phosphorylated proteins. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|198268 cd10405, SH2_Vav1, Src homology 2 (SH2) domain found in the Vav1 proteins

 Score = 46.2 bits (109), Expect = 2e-06
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 7/86 (8%)

Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 347
           WY G M R  A++IL +  D G +LVR        + + +K N +V H  I        +
Sbjct: 7   WYAGPMERAGAESILANRSD-GTYLVRQRVKDAAEFAISIKYNVEVKHIKI-----MTAE 60

Query: 348 TCYKIGD-KTFSDLPSLLAFYKVHYL 372
             Y+I + K F  L  L+ FY+ + L
Sbjct: 61  GLYRITEKKAFRGLTELVEFYQQNSL 86

Proto-oncogene vav is a member of the Dbl family of guanine nucleotide exchange factors (GEF) for the Rho family of GTP binding proteins. All vavs are activated by tyrosine phosphorylation leading to their activation. There are three Vav mammalian family members: Vav1 which is expressed in the hematopoietic system, and Vav2 and Vav3 are more ubiquitously expressed. Vav1 plays a role in T-cell and B-cell development and activation. It has been identified as the specific binding partner of Nef proteins from HIV-1, resulting in morphological changes, cytoskeletal rearrangements, and the JNK/SAPK signaling cascade, leading to increased levels of viral transcription and replication. Vav1 has been shown to interact with Ku70, PLCG1, Lymphocyte cytosolic protein 2, Janus kinase 2, SIAH2, S100B, Abl gene, ARHGDIB, SHB, PIK3R1, PRKCQ, Grb2, MAPK1, Syk, Linker of activated T cells, Cbl gene and EZH2. Vav proteins are involved in several processes that require cytoskeletal reorganization, such as the formation of the immunological synapse (IS), phagocytosis, platelet aggregation, spreading, and transformation. Vavs function as guanine nucleotide exchange factors (GEFs) for the Rho/Rac family of GTPases. Vav family members have several conserved motifs/domains including: a leucine-rich region, a leucine-zipper, a calponin homology (CH) domain, an acidic domain, a Dbl-homology (DH) domain, a pleckstrin homology (PH) domain, a cysteine-rich domain, 2 SH3 domains, a proline-rich region, and a SH2 domain. Vavs are the only known Rho GEFs that have both the DH/PH motifs and SH2/SH3 domains in the same protein. The leucine-rich helix-loop-helix (HLH) domain is thought to be involved in protein heterodimerization with other HLH proteins and it may function as a negative regulator by forming inactive heterodimers. The CH domain is usually involved in the association with filamentous actin, but in Vav it controls NFAT stimulation, Ca2+ mobilization, and its transforming activity. Acidic domains are involved in protein-protein interactions and contain regulatory tyrosines. The DH domain is a GDP-GTP exchange factor on Rho/Rac GTPases. The PH domain in involved in interactions with GTP-binding proteins, lipids and/or phosphorylated serine/threonine residues. The SH3 domain is involved in localization of proteins to specific sites within the cell interacting with protein with proline-rich sequences. The SH2 domain mediates a high affinity interaction with tyrosine phosphorylated proteins. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|212940 cd12007, SH3_Yes, Src homology 3 domain of Yes Protein Tyrosine Kinase

 Score = 44.6 bits (105), Expect = 2e-06
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
           +A YD++    +DL FKK +   +++  E  WW A++I +G+ G IP  YV
Sbjct: 4   VALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKNGYIPSNYV 54

Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212940 cd12007, SH3_Yes, Src homology 3 domain of Yes Protein Tyrosine Kinase

 Score = 44.6 bits (105), Expect = 2e-06
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 389 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 438
           +A YD++    +DL FKK +   +++  E  WW A++I +G+ G IP  YV
Sbjct: 4   VALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKNGYIPSNYV 54

Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212909 cd11976, SH3_VAV1_2, C-terminal (or second) Src homology 3 domain of VAV1 protein

 Score = 44.5 bits (105), Expect = 2e-06
 Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 218 AYDKTALKLEIGDIIKV-TKTNINGQWEGELNGKTGHFPFTHVE 260
           A D++ L L+ GDIIK+  K    G W GE+ G+ G FP  +VE
Sbjct: 10  ARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRVGWFPANYVE 53

VAV1 is expressed predominantly in the hematopoietic system and it plays an important role in the development and activation of B and T cells. It is activated by tyrosine phosphorylation to function as a guanine nucleotide exchange factor (GEF) for Rho GTPases following cell surface receptor activation, triggering various effects such as cytoskeletal reorganization, transcription regulation, cell cycle progression, and calcium mobilization. It also serves as a scaffold protein and has been shown to interact with Ku70, Socs1, Janus kinase 2, SIAH2, S100B, Abl gene, ZAP-70, SLP76, and Syk, among others. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The C-terminal SH3 domain of Vav1 interacts with a wide variety of proteins including cytoskeletal regulators (zyxin), RNA-binding proteins (Sam68), transcriptional regulators, viral proteins, and dynamin 2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212909 cd11976, SH3_VAV1_2, C-terminal (or second) Src homology 3 domain of VAV1 protein

 Score = 44.5 bits (105), Expect = 2e-06
 Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 493 AYDKTALKLEIGDIIKV-TKTNINGQWEGELNGKTGHFPFTHVE 535
           A D++ L L+ GDIIK+  K    G W GE+ G+ G FP  +VE
Sbjct: 10  ARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRVGWFPANYVE 53

VAV1 is expressed predominantly in the hematopoietic system and it plays an important role in the development and activation of B and T cells. It is activated by tyrosine phosphorylation to function as a guanine nucleotide exchange factor (GEF) for Rho GTPases following cell surface receptor activation, triggering various effects such as cytoskeletal reorganization, transcription regulation, cell cycle progression, and calcium mobilization. It also serves as a scaffold protein and has been shown to interact with Ku70, Socs1, Janus kinase 2, SIAH2, S100B, Abl gene, ZAP-70, SLP76, and Syk, among others. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The C-terminal SH3 domain of Vav1 interacts with a wide variety of proteins including cytoskeletal regulators (zyxin), RNA-binding proteins (Sam68), transcriptional regulators, viral proteins, and dynamin 2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212810 cd11877, SH3_PIX, Src Homology 3 domain of Pak Interactive eXchange factors

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 20/37 (54%), Positives = 24/37 (64%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
           L  + GDII VT+    G WEG LNGKTG FP  +V+
Sbjct: 16  LSFDKGDIITVTQVVEGGWWEGTLNGKTGWFPSNYVK 52

PIX proteins are Rho guanine nucleotide exchange factors (GEFs), which activate small GTPases by exchanging bound GDP for free GTP. They act as GEFs for both Cdc42 and Rac 1, and have been implicated in cell motility, adhesion, neurite outgrowth, and cell polarity. Vertebrates contain two proteins from the PIX subfamily, alpha-PIX and beta-PIX. Alpha-PIX, also called ARHGEF6, is localized in dendritic spines where it regulates spine morphogenesis. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. Beta-PIX play roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212810 cd11877, SH3_PIX, Src Homology 3 domain of Pak Interactive eXchange factors

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 20/37 (54%), Positives = 24/37 (64%)

Query: 499 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 535
           L  + GDII VT+    G WEG LNGKTG FP  +V+
Sbjct: 16  LSFDKGDIITVTQVVEGGWWEGTLNGKTGWFPSNYVK 52

PIX proteins are Rho guanine nucleotide exchange factors (GEFs), which activate small GTPases by exchanging bound GDP for free GTP. They act as GEFs for both Cdc42 and Rac 1, and have been implicated in cell motility, adhesion, neurite outgrowth, and cell polarity. Vertebrates contain two proteins from the PIX subfamily, alpha-PIX and beta-PIX. Alpha-PIX, also called ARHGEF6, is localized in dendritic spines where it regulates spine morphogenesis. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. Beta-PIX play roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212757 cd11823, SH3_Nostrin, Src homology 3 domain of Nitric Oxide Synthase TRaffic INducer

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           A Y +  N  D+L  +  DI+ V  K ++ WW    ++G+ G  P  YV+
Sbjct: 4   ALYSYTANREDELSLQPGDIIEVHEKQDDGWWLG-ELNGKKGIFPATYVE 52

Nostrin is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). It facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of Nostrin may be correlated to preeclampsia. Nostrin contains an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212757 cd11823, SH3_Nostrin, Src homology 3 domain of Nitric Oxide Synthase TRaffic INducer

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 390 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
           A Y +  N  D+L  +  DI+ V  K ++ WW    ++G+ G  P  YV+
Sbjct: 4   ALYSYTANREDELSLQPGDIIEVHEKQDDGWWLG-ELNGKKGIFPATYVE 52

Nostrin is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). It facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of Nostrin may be correlated to preeclampsia. Nostrin contains an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|198188 cd09934, SH2_Tec_family, Src homology 2 (SH2) domain found in Tec-like proteins

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 9  DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCV----KENNKVSHYIIN 64
          ++  WY G M+RQ A+++L  E   G F+VR+S+T  G Y + +      +  V HY I 
Sbjct: 4  EKYEWYVGDMSRQRAESLLKQEDKEGCFVVRNSST-KGLYTVSLFTKVPGSPHVKHYHIK 62

Query: 65 KITNTEQQTCYKIGDK-TFSDLPSLLAFYK 93
          +  N   +  + + +K  F  +P L+ +++
Sbjct: 63 Q--NARSE--FYLAEKHCFETIPELINYHQ 88

The Tec protein tyrosine kinase is the founding member of a family that includes Btk, Itk, Bmx, and Txk. The members have a PH domain, a zinc-binding motif, a SH3 domain, a SH2 domain, and a protein kinase catalytic domain. Btk is involved in B-cell receptor signaling with mutations in Btk responsible for X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency (xid) in mice. Itk is involved in T-cell receptor signaling. Tec is expressed in both T and B cells, and is thought to function in activated and effector T lymphocytes to induce the expression of genes regulated by NFAT transcription factors. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|198188 cd09934, SH2_Tec_family, Src homology 2 (SH2) domain found in Tec-like proteins

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 284 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCV----KENNKVSHYIIN 339
           ++  WY G M+RQ A+++L  E   G F+VR+S+T  G Y + +      +  V HY I 
Sbjct: 4   EKYEWYVGDMSRQRAESLLKQEDKEGCFVVRNSST-KGLYTVSLFTKVPGSPHVKHYHIK 62

Query: 340 KITNTEQQTCYKIGDK-TFSDLPSLLAFYK 368
           +  N   +  + + +K  F  +P L+ +++
Sbjct: 63  Q--NARSE--FYLAEKHCFETIPELINYHQ 88

The Tec protein tyrosine kinase is the founding member of a family that includes Btk, Itk, Bmx, and Txk. The members have a PH domain, a zinc-binding motif, a SH3 domain, a SH2 domain, and a protein kinase catalytic domain. Btk is involved in B-cell receptor signaling with mutations in Btk responsible for X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency (xid) in mice. Itk is involved in T-cell receptor signaling. Tec is expressed in both T and B cells, and is thought to function in activated and effector T lymphocytes to induce the expression of genes regulated by NFAT transcription factors. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|198277 cd10414, SH2_Grb14, Src homology 2 (SH2) domain found in the growth factor receptor bound, subclass 14 (Grb14) proteins

 Score = 46.1 bits (109), Expect = 3e-06
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 8  HDRNSWYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKENNKVSHY-IINK 65
          H    W+   ++R EAQ +++ +   +G FLVRDS +    +VL +    K+ H+ II  
Sbjct: 2  HRSQPWFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPRTFVLSMSHGQKIKHFQIIPV 61

Query: 66 ITNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
            + E       G   F+DL  L+ FY+++
Sbjct: 62 EDDGELFHTLDDGHTRFTDLIQLVEFYQLN 91

The Grb family binds to the epidermal growth factor receptor (EGFR, erbB1) via their SH2 domains. Grb14 is part of the Grb7 family of proteins which also includes Grb7, and Grb14. They are composed of an N-terminal Proline-rich domain, a Ras Associating-like (RA) domain, a Pleckstrin Homology (PH) domain, a phosphotyrosine interaction region (PIR, BPS) and a C-terminal SH2 domain. The SH2 domains of Grb7, Grb10 and Grb14 preferentially bind to a different RTK. Grb14 binds to Fibroblast Growth Factor Receptor (FGFR) and weakly to the erbB2 receptor. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 108

>gnl|CDD|198277 cd10414, SH2_Grb14, Src homology 2 (SH2) domain found in the growth factor receptor bound, subclass 14 (Grb14) proteins

 Score = 46.1 bits (109), Expect = 3e-06
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 283 HDRNSWYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKENNKVSHY-IINK 340
           H    W+   ++R EAQ +++ +   +G FLVRDS +    +VL +    K+ H+ II  
Sbjct: 2   HRSQPWFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPRTFVLSMSHGQKIKHFQIIPV 61

Query: 341 ITNTEQQTCYKIGDKTFSDLPSLLAFYKVH 370
             + E       G   F+DL  L+ FY+++
Sbjct: 62  EDDGELFHTLDDGHTRFTDLIQLVEFYQLN 91

The Grb family binds to the epidermal growth factor receptor (EGFR, erbB1) via their SH2 domains. Grb14 is part of the Grb7 family of proteins which also includes Grb7, and Grb14. They are composed of an N-terminal Proline-rich domain, a Ras Associating-like (RA) domain, a Pleckstrin Homology (PH) domain, a phosphotyrosine interaction region (PIR, BPS) and a C-terminal SH2 domain. The SH2 domains of Grb7, Grb10 and Grb14 preferentially bind to a different RTK. Grb14 binds to Fibroblast Growth Factor Receptor (FGFR) and weakly to the erbB2 receptor. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 108

>gnl|CDD|213014 cd12081, SH3_CASK, Src Homology 3 domain of Calcium/calmodulin-dependent Serine protein Kinase

 Score = 44.5 bits (105), Expect = 3e-06
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 10/59 (16%)

Query: 113 VIAKYDFDGNDPDDLP-------FKKNDILIVVSKDEEHWWTAQ---NISGEVGSIPVP 161
           V A++++D    D +P       F+  DIL ++SKD+ +WW A+   + +G  G IP P
Sbjct: 2   VRAQFEYDPLKDDLIPCKQAGIRFRVGDILQIISKDDHNWWQAKLENSKNGTAGLIPSP 60

CASK is a scaffolding protein that is highly expressed in the mammalian nervous system and plays roles in synaptic protein targeting, neural development, and gene expression regulation. CASK interacts with many different binding partners including parkin, neurexin, syndecans, calcium channel proteins, caskin, among others, to perform specific functions in different subcellular locations. Disruption of the CASK gene in mice results in neonatal lethality while mutations in the human gene have been associated with X-linked mental retardation. Drosophila CASK is associated with both pre- and postsynaptic membranes and is crucial in synaptic transmission and vesicle cycling. CASK contains an N-terminal calmodulin-dependent kinase (CaMK)-like domain, two L27 domains, followed by the core of three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). In addition, it also contains the Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|213014 cd12081, SH3_CASK, Src Homology 3 domain of Calcium/calmodulin-dependent Serine protein Kinase

 Score = 44.5 bits (105), Expect = 3e-06
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 10/59 (16%)

Query: 388 VIAKYDFDGNDPDDLP-------FKKNDILIVVSKDEEHWWTAQ---NISGEVGSIPVP 436
           V A++++D    D +P       F+  DIL ++SKD+ +WW A+   + +G  G IP P
Sbjct: 2   VRAQFEYDPLKDDLIPCKQAGIRFRVGDILQIISKDDHNWWQAKLENSKNGTAGLIPSP 60

CASK is a scaffolding protein that is highly expressed in the mammalian nervous system and plays roles in synaptic protein targeting, neural development, and gene expression regulation. CASK interacts with many different binding partners including parkin, neurexin, syndecans, calcium channel proteins, caskin, among others, to perform specific functions in different subcellular locations. Disruption of the CASK gene in mice results in neonatal lethality while mutations in the human gene have been associated with X-linked mental retardation. Drosophila CASK is associated with both pre- and postsynaptic membranes and is crucial in synaptic transmission and vesicle cycling. CASK contains an N-terminal calmodulin-dependent kinase (CaMK)-like domain, two L27 domains, followed by the core of three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). In addition, it also contains the Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212777 cd11843, SH3_PACSIN, Src homology 3 domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 20/52 (38%), Positives = 30/52 (57%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           V A YD++G + D+L FK  DIL  + +++E  W    + G VG  P  YV+
Sbjct: 2   VRALYDYEGQESDELSFKAGDILTKLEEEDEQGWCKGRLDGRVGLYPANYVE 53

PACSINs, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212777 cd11843, SH3_PACSIN, Src homology 3 domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 20/52 (38%), Positives = 30/52 (57%)

Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
           V A YD++G + D+L FK  DIL  + +++E  W    + G VG  P  YV+
Sbjct: 2   VRALYDYEGQESDELSFKAGDILTKLEEEDEQGWCKGRLDGRVGLYPANYVE 53

PACSINs, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|198227 cd10364, SH2_Src_Lyn, Src homology 2 (SH2) domain found in Lyn

 Score = 45.7 bits (108), Expect = 3e-06
 Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 9/87 (10%)

Query: 13 WYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKI 66
          W+F  +TR++A+  LL+  ++ GAFL+R+S T+ G+Y L V++      + + HY I  +
Sbjct: 5  WFFKDITRKDAERQLLAPGNSAGAFLIRESETLKGSYSLSVRDYDPQHGDVIKHYKIRSL 64

Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYK 93
           N       +I   TF  +  ++  Y+
Sbjct: 65 DNGGYYISPRI---TFPCISDMIKHYQ 88

Lyn is a member of the Src non-receptor type tyrosine kinase family of proteins and is expressed in the hematopoietic cells, in neural tissues, liver, and adipose tissue. There are two alternatively spliced forms of Lyn. Lyn plays an inhibitory role in myeloid lineage proliferation. Following engagement of the B cell receptors, Lyn undergoes rapid phosphorylation and activation, triggering a cascade of signaling events mediated by Lyn phosphorylation of tyrosine residues within the immunoreceptor tyrosine-based activation motifs (ITAM) of the receptor proteins, and subsequent recruitment and activation of other kinases including Syk, phospholipase C2 (PLC2) and phosphatidyl inositol-3 kinase. These kinases play critical roles in proliferation, Ca2+ mobilization and cell differentiation. Lyn plays an essential role in the transmission of inhibitory signals through phosphorylation of tyrosine residues within the immunoreceptor tyrosine-based inhibitory motifs (ITIM) in regulatory proteins such as CD22, PIR-B and FC RIIb1. Their ITIM phosphorylation subsequently leads to recruitment and activation of phosphatases such as SHIP-1 and SHP-1 which further down modulate signaling pathways, attenuate cell activation and can mediate tolerance. Lyn also plays a role in the insulin signaling pathway. Activated Lyn phosphorylates insulin receptor substrate 1 (IRS1) leading to an increase in translocation of Glut-4 to the cell membrane and increased glucose utilization. It is the primary Src family member involved in signaling downstream of the B cell receptor. Lyn plays an unusual, 2-fold role in B cell receptor signaling; it is essential for initiation of signaling but is also later involved in negative regulation of the signal. Lyn has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198227 cd10364, SH2_Src_Lyn, Src homology 2 (SH2) domain found in Lyn

 Score = 45.7 bits (108), Expect = 3e-06
 Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 9/87 (10%)

Query: 288 WYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKI 341
           W+F  +TR++A+  LL+  ++ GAFL+R+S T+ G+Y L V++      + + HY I  +
Sbjct: 5   WFFKDITRKDAERQLLAPGNSAGAFLIRESETLKGSYSLSVRDYDPQHGDVIKHYKIRSL 64

Query: 342 TNTEQQTCYKIGDKTFSDLPSLLAFYK 368
            N       +I   TF  +  ++  Y+
Sbjct: 65  DNGGYYISPRI---TFPCISDMIKHYQ 88

Lyn is a member of the Src non-receptor type tyrosine kinase family of proteins and is expressed in the hematopoietic cells, in neural tissues, liver, and adipose tissue. There are two alternatively spliced forms of Lyn. Lyn plays an inhibitory role in myeloid lineage proliferation. Following engagement of the B cell receptors, Lyn undergoes rapid phosphorylation and activation, triggering a cascade of signaling events mediated by Lyn phosphorylation of tyrosine residues within the immunoreceptor tyrosine-based activation motifs (ITAM) of the receptor proteins, and subsequent recruitment and activation of other kinases including Syk, phospholipase C2 (PLC2) and phosphatidyl inositol-3 kinase. These kinases play critical roles in proliferation, Ca2+ mobilization and cell differentiation. Lyn plays an essential role in the transmission of inhibitory signals through phosphorylation of tyrosine residues within the immunoreceptor tyrosine-based inhibitory motifs (ITIM) in regulatory proteins such as CD22, PIR-B and FC RIIb1. Their ITIM phosphorylation subsequently leads to recruitment and activation of phosphatases such as SHIP-1 and SHP-1 which further down modulate signaling pathways, attenuate cell activation and can mediate tolerance. Lyn also plays a role in the insulin signaling pathway. Activated Lyn phosphorylates insulin receptor substrate 1 (IRS1) leading to an increase in translocation of Glut-4 to the cell membrane and increased glucose utilization. It is the primary Src family member involved in signaling downstream of the B cell receptor. Lyn plays an unusual, 2-fold role in B cell receptor signaling; it is essential for initiation of signaling but is also later involved in negative regulation of the signal. Lyn has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|212810 cd11877, SH3_PIX, Src Homology 3 domain of Pak Interactive eXchange factors

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
            V AK++F+G + D+L F K DI+ V    E  WW    ++G+ G  P  YV
Sbjct: 1   LVRAKFNFEGTNEDELSFDKGDIITVTQVVEGGWWEG-TLNGKTGWFPSNYV 51

PIX proteins are Rho guanine nucleotide exchange factors (GEFs), which activate small GTPases by exchanging bound GDP for free GTP. They act as GEFs for both Cdc42 and Rac 1, and have been implicated in cell motility, adhesion, neurite outgrowth, and cell polarity. Vertebrates contain two proteins from the PIX subfamily, alpha-PIX and beta-PIX. Alpha-PIX, also called ARHGEF6, is localized in dendritic spines where it regulates spine morphogenesis. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. Beta-PIX play roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212810 cd11877, SH3_PIX, Src Homology 3 domain of Pak Interactive eXchange factors

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 438
            V AK++F+G + D+L F K DI+ V    E  WW    ++G+ G  P  YV
Sbjct: 1   LVRAKFNFEGTNEDELSFDKGDIITVTQVVEGGWWEG-TLNGKTGWFPSNYV 51

PIX proteins are Rho guanine nucleotide exchange factors (GEFs), which activate small GTPases by exchanging bound GDP for free GTP. They act as GEFs for both Cdc42 and Rac 1, and have been implicated in cell motility, adhesion, neurite outgrowth, and cell polarity. Vertebrates contain two proteins from the PIX subfamily, alpha-PIX and beta-PIX. Alpha-PIX, also called ARHGEF6, is localized in dendritic spines where it regulates spine morphogenesis. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. Beta-PIX play roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|213018 cd12142, SH3_D21-like, Src Homology 3 domain of SH3 domain-containing protein 21 (SH3D21) and similar proteins

 Score = 44.0 bits (104), Expect = 4e-06
 Identities = 22/47 (46%), Positives = 26/47 (55%), Gaps = 4/47 (8%)

Query: 216 PNAYDKTALKLEIGDIIKVTKTNI--NGQWEGELNGKTGHFPFTHVE 260
           P A D+ ALK   GD+I+V        G WEGELNG+ G FP   V 
Sbjct: 10  PVAPDELALK--KGDVIEVISKETEDEGWWEGELNGRRGFFPDNFVM 54

N-terminal SH3 domain of the uncharacterized protein SH3 domain-containing protein 21, and similar uncharacterized domains, it belongs to the CD2AP-like_3 subfamily of proteins. The CD2AP-like_3 subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|213018 cd12142, SH3_D21-like, Src Homology 3 domain of SH3 domain-containing protein 21 (SH3D21) and similar proteins

 Score = 44.0 bits (104), Expect = 4e-06
 Identities = 22/47 (46%), Positives = 26/47 (55%), Gaps = 4/47 (8%)

Query: 491 PNAYDKTALKLEIGDIIKVTKTNI--NGQWEGELNGKTGHFPFTHVE 535
           P A D+ ALK   GD+I+V        G WEGELNG+ G FP   V 
Sbjct: 10  PVAPDELALK--KGDVIEVISKETEDEGWWEGELNGRRGFFPDNFVM 54

N-terminal SH3 domain of the uncharacterized protein SH3 domain-containing protein 21, and similar uncharacterized domains, it belongs to the CD2AP-like_3 subfamily of proteins. The CD2AP-like_3 subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|198276 cd10413, SH2_Grb7, Src homology 2 (SH2) domain found in the growth factor receptor bound, subclass 7 (Grb7) proteins

 Score = 45.7 bits (108), Expect = 4e-06
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 4/91 (4%)

Query: 8  HDRNSWYFGMMTRQEAQAILLSEK-DNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI 66
          H    W+ G ++R+E+Q ++  +   +G FLVR+S      +VL +    KV HY+I   
Sbjct: 2  HRTQPWFHGRISREESQRLIGQQGLVDGVFLVRESQRNPQGFVLSLCHLQKVKHYLILPS 61

Query: 67 TNTEQQTCYKI--GDKTFSDLPSLLAFYKVH 95
             E +  + +  G   F+DL  L+ F++++
Sbjct: 62 -EEEGRLYFSMDDGQTRFTDLLQLVEFHQLN 91

The Grb family binds to the epidermal growth factor receptor (EGFR, erbB1) via their SH2 domains. Grb7 is part of the Grb7 family of proteins which also includes Grb10, and Grb14. They are composed of an N-terminal Proline-rich domain, a Ras Associating-like (RA) domain, a Pleckstrin Homology (PH) domain, a phosphotyrosine interaction region (PIR, BPS) and a C-terminal SH2 domain. The SH2 domains of Grb7, Grb10 and Grb14 preferentially bind to a different RTK. Grb7 binds strongly to the erbB2 receptor, unlike Grb10 and Grb14 which bind weakly to it. Grb7 family proteins are phosphorylated on serine/threonine as well as tyrosine residues. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 108

>gnl|CDD|198276 cd10413, SH2_Grb7, Src homology 2 (SH2) domain found in the growth factor receptor bound, subclass 7 (Grb7) proteins

 Score = 45.7 bits (108), Expect = 4e-06
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 4/91 (4%)

Query: 283 HDRNSWYFGMMTRQEAQAILLSEK-DNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI 341
           H    W+ G ++R+E+Q ++  +   +G FLVR+S      +VL +    KV HY+I   
Sbjct: 2   HRTQPWFHGRISREESQRLIGQQGLVDGVFLVRESQRNPQGFVLSLCHLQKVKHYLILPS 61

Query: 342 TNTEQQTCYKI--GDKTFSDLPSLLAFYKVH 370
              E +  + +  G   F+DL  L+ F++++
Sbjct: 62  -EEEGRLYFSMDDGQTRFTDLLQLVEFHQLN 91

The Grb family binds to the epidermal growth factor receptor (EGFR, erbB1) via their SH2 domains. Grb7 is part of the Grb7 family of proteins which also includes Grb10, and Grb14. They are composed of an N-terminal Proline-rich domain, a Ras Associating-like (RA) domain, a Pleckstrin Homology (PH) domain, a phosphotyrosine interaction region (PIR, BPS) and a C-terminal SH2 domain. The SH2 domains of Grb7, Grb10 and Grb14 preferentially bind to a different RTK. Grb7 binds strongly to the erbB2 receptor, unlike Grb10 and Grb14 which bind weakly to it. Grb7 family proteins are phosphorylated on serine/threonine as well as tyrosine residues. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 108

>gnl|CDD|212900 cd11967, SH3_SASH1, Src homology 3 domain of SAM And SH3 Domain Containing Protein 1

 Score = 43.9 bits (103), Expect = 4e-06
 Identities = 23/55 (41%), Positives = 30/55 (54%)

Query: 208 ARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
           ARV     P+ YD  +LKL+ GDII +      G W G LN K G F F +V+ +
Sbjct: 3   ARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDVL 57

SASH1 is a potential tumor suppressor in breast and colon cancer. Its decreased expression is associated with aggressive tumor growth, metastasis, and poor prognosis. It is widely expressed in normal tissues (except lymphocytes and dendritic cells) and is localized in the nucleus and the cytoplasm. SASH1 interacts with the oncoprotein cortactin and is important in cell migration and adhesion. It is a member of the SLY family of proteins, which are adaptor proteins containing a central conserved region with a bipartite nuclear localization signal (NLS) as well as SAM (sterile alpha motif) and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212900 cd11967, SH3_SASH1, Src homology 3 domain of SAM And SH3 Domain Containing Protein 1

 Score = 43.9 bits (103), Expect = 4e-06
 Identities = 23/55 (41%), Positives = 30/55 (54%)

Query: 483 ARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 537
           ARV     P+ YD  +LKL+ GDII +      G W G LN K G F F +V+ +
Sbjct: 3   ARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDVL 57

SASH1 is a potential tumor suppressor in breast and colon cancer. Its decreased expression is associated with aggressive tumor growth, metastasis, and poor prognosis. It is widely expressed in normal tissues (except lymphocytes and dendritic cells) and is localized in the nucleus and the cytoplasm. SASH1 interacts with the oncoprotein cortactin and is important in cell migration and adhesion. It is a member of the SLY family of proteins, which are adaptor proteins containing a central conserved region with a bipartite nuclear localization signal (NLS) as well as SAM (sterile alpha motif) and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212705 cd11771, SH3_Pex13p_fungal, Src Homology 3 domain of fungal peroxisomal membrane protein Pex13p

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 6/56 (10%)

Query: 115 AKYDFDGNDPD-DLPFKKNDILIVVSK-----DEEHWWTAQNISGEVGSIPVPYVQ 164
           A YDF   +P+ +L  KK DI+ V+SK      +  WW  +   G +G  P  YV+
Sbjct: 4   ALYDFTPENPEMELSLKKGDIVAVLSKTDPLGRDSEWWKGRTRDGRIGWFPSNYVE 59

Pex13p, located in the peroxisomal membrane, contains two transmembrane regions and a C-terminal SH3 domain. It binds to the peroxisomal targeting type I (PTS1) receptor Pex5p and the docking factor Pex14p through its SH3 domain. It is essential for both PTS1 and PTS2 protein import pathways into the peroxisomal matrix. Pex13p binds Pex14p, which contains a PxxP motif, in a classical fashion to the proline-rich ligand binding site of its SH3 domain. It binds the WxxxF/Y motif of Pex5p in a novel site that does not compete with Pex14p binding. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 60

>gnl|CDD|212705 cd11771, SH3_Pex13p_fungal, Src Homology 3 domain of fungal peroxisomal membrane protein Pex13p

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 6/56 (10%)

Query: 390 AKYDFDGNDPD-DLPFKKNDILIVVSK-----DEEHWWTAQNISGEVGSIPVPYVQ 439
           A YDF   +P+ +L  KK DI+ V+SK      +  WW  +   G +G  P  YV+
Sbjct: 4   ALYDFTPENPEMELSLKKGDIVAVLSKTDPLGRDSEWWKGRTRDGRIGWFPSNYVE 59

Pex13p, located in the peroxisomal membrane, contains two transmembrane regions and a C-terminal SH3 domain. It binds to the peroxisomal targeting type I (PTS1) receptor Pex5p and the docking factor Pex14p through its SH3 domain. It is essential for both PTS1 and PTS2 protein import pathways into the peroxisomal matrix. Pex13p binds Pex14p, which contains a PxxP motif, in a classical fashion to the proline-rich ligand binding site of its SH3 domain. It binds the WxxxF/Y motif of Pex5p in a novel site that does not compete with Pex14p binding. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 60

>gnl|CDD|198281 cd10418, SH2_Src_Fyn_isoform_a_like, Src homology 2 (SH2) domain found in Fyn isoform a like proteins

 Score = 45.4 bits (107), Expect = 4e-06
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 6/62 (9%)

Query: 13 WYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKI 66
          WYFG + R++A+  LLS  +  G FL+R+S T  G Y L +++      + V HY I K+
Sbjct: 5  WYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKL 64

Query: 67 TN 68
           N
Sbjct: 65 DN 66

Fyn is a member of the Src non-receptor type tyrosine kinase family of proteins. This cd contains the SH2 domain found in Fyn isoform a type proteins. Fyn is involved in the control of cell growth and is required in the following pathways: T and B cell receptor signaling, integrin-mediated signaling, growth factor and cytokine receptor signaling, platelet activation, ion channel function, cell adhesion, axon guidance, fertilization, entry into mitosis, and differentiation of natural killer cells, oligodendrocytes and keratinocytes. The protein associates with the p85 subunit of phosphatidylinositol 3-kinase and interacts with the Fyn-binding protein. Alternatively spliced transcript variants encoding distinct isoforms exist. Fyn is primarily localized to the cytoplasmic leaflet of the plasma membrane. Tyrosine phosphorylation of target proteins by Fyn serves to either regulate target protein activity, and/or to generate a binding site on the target protein that recruits other signaling molecules. FYN has been shown to interact with a number of proteins including: BCAR1, Cbl, Janus kinase, nephrin, Sky, tyrosine kinase, Wiskott-Aldrich syndrome protein, and Zap-70. Fyn has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198281 cd10418, SH2_Src_Fyn_isoform_a_like, Src homology 2 (SH2) domain found in Fyn isoform a like proteins

 Score = 45.4 bits (107), Expect = 4e-06
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 6/62 (9%)

Query: 288 WYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKI 341
           WYFG + R++A+  LLS  +  G FL+R+S T  G Y L +++      + V HY I K+
Sbjct: 5   WYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKL 64

Query: 342 TN 343
            N
Sbjct: 65  DN 66

Fyn is a member of the Src non-receptor type tyrosine kinase family of proteins. This cd contains the SH2 domain found in Fyn isoform a type proteins. Fyn is involved in the control of cell growth and is required in the following pathways: T and B cell receptor signaling, integrin-mediated signaling, growth factor and cytokine receptor signaling, platelet activation, ion channel function, cell adhesion, axon guidance, fertilization, entry into mitosis, and differentiation of natural killer cells, oligodendrocytes and keratinocytes. The protein associates with the p85 subunit of phosphatidylinositol 3-kinase and interacts with the Fyn-binding protein. Alternatively spliced transcript variants encoding distinct isoforms exist. Fyn is primarily localized to the cytoplasmic leaflet of the plasma membrane. Tyrosine phosphorylation of target proteins by Fyn serves to either regulate target protein activity, and/or to generate a binding site on the target protein that recruits other signaling molecules. FYN has been shown to interact with a number of proteins including: BCAR1, Cbl, Janus kinase, nephrin, Sky, tyrosine kinase, Wiskott-Aldrich syndrome protein, and Zap-70. Fyn has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|212861 cd11928, SH3_SH3RF3_1, First Src Homology 3 domain of SH3 domain containing ring finger 3, an E3 ubiquitin-protein ligase

 Score = 43.8 bits (103), Expect = 4e-06
 Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           A Y ++G +P DL F K DI+I+  K +E+W+  + ++G  G +P  Y+Q
Sbjct: 5   ALYSYEGKEPGDLKFNKGDIIILRRKVDENWYHGE-LNGCHGFLPASYIQ 53

SH3RF3 is also called POSH2 (Plenty of SH3s 2) or SH3MD4 (SH3 multiple domains protein 4). It is a scaffold protein with E3 ubiquitin-protein ligase activity. It was identified in the screen for interacting partners of p21-activated kinase 2 (PAK2). It may play a role in regulating JNK mediated apoptosis in certain conditions. It also interacts with GTP-loaded Rac1. SH3RF3 is highly homologous to SH3RF1; it also contains an N-terminal RING finger domain and four SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF3. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212861 cd11928, SH3_SH3RF3_1, First Src Homology 3 domain of SH3 domain containing ring finger 3, an E3 ubiquitin-protein ligase

 Score = 43.8 bits (103), Expect = 4e-06
 Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 390 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
           A Y ++G +P DL F K DI+I+  K +E+W+  + ++G  G +P  Y+Q
Sbjct: 5   ALYSYEGKEPGDLKFNKGDIIILRRKVDENWYHGE-LNGCHGFLPASYIQ 53

SH3RF3 is also called POSH2 (Plenty of SH3s 2) or SH3MD4 (SH3 multiple domains protein 4). It is a scaffold protein with E3 ubiquitin-protein ligase activity. It was identified in the screen for interacting partners of p21-activated kinase 2 (PAK2). It may play a role in regulating JNK mediated apoptosis in certain conditions. It also interacts with GTP-loaded Rac1. SH3RF3 is highly homologous to SH3RF1; it also contains an N-terminal RING finger domain and four SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF3. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|198221 cd10358, SH2_PTK6_Brk, Src homology 2 domain found in protein-tyrosine kinase-6 (PTK6) which is also known as breast tumor kinase (Brk)

 Score = 45.1 bits (106), Expect = 5e-06
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 4/86 (4%)

Query: 13 WYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 71
          W+FG ++R EA   L +E +  GAFL+R S     +YVL V++   V HY I +      
Sbjct: 4  WFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGRL 63

Query: 72 QTCYKIGDKTFSDLPSLLAFYKVHYL 97
               +   +F  LP L+ +++   L
Sbjct: 64 HLNEAV---SFLSLPELVNYHRAQSL 86

Human protein-tyrosine kinase-6 (PTK6, also known as breast tumor kinase (Brk)) is a member of the non-receptor protein-tyrosine kinase family and is expressed in two-thirds of all breast tumors. PTK6 (9). PTK6 contains a SH3 domain, a SH2 domain, and catalytic domains. For the case of the non-receptor protein-tyrosine kinases, the SH2 domain is typically involved in negative regulation of kinase activity by binding to a phosphorylated tyrosine residue near to the C terminus. The C-terminal sequence of PTK6 (PTSpYENPT where pY is phosphotyrosine) is thought to be a self-ligand for the SH2 domain. The structure of the SH2 domain resembles other SH2 domains except for a centrally located four-stranded antiparallel beta-sheet (strands betaA, betaB, betaC, and betaD). There are also differences in the loop length which might be responsible for PTK6 ligand specificity. There are two possible means of regulation of PTK6: autoinhibitory with the phosphorylation of Tyr playing a role in its negative regulation and autophosphorylation at this site, though it has been shown that PTK6 might phosphorylate signal transduction-associated proteins Sam68 and signal transducing adaptor family member 2 (STAP/BKS) in vivo. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 100

>gnl|CDD|198221 cd10358, SH2_PTK6_Brk, Src homology 2 domain found in protein-tyrosine kinase-6 (PTK6) which is also known as breast tumor kinase (Brk)

 Score = 45.1 bits (106), Expect = 5e-06
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 4/86 (4%)

Query: 288 WYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 346
           W+FG ++R EA   L +E +  GAFL+R S     +YVL V++   V HY I +      
Sbjct: 4   WFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGRL 63

Query: 347 QTCYKIGDKTFSDLPSLLAFYKVHYL 372
                +   +F  LP L+ +++   L
Sbjct: 64  HLNEAV---SFLSLPELVNYHRAQSL 86

Human protein-tyrosine kinase-6 (PTK6, also known as breast tumor kinase (Brk)) is a member of the non-receptor protein-tyrosine kinase family and is expressed in two-thirds of all breast tumors. PTK6 (9). PTK6 contains a SH3 domain, a SH2 domain, and catalytic domains. For the case of the non-receptor protein-tyrosine kinases, the SH2 domain is typically involved in negative regulation of kinase activity by binding to a phosphorylated tyrosine residue near to the C terminus. The C-terminal sequence of PTK6 (PTSpYENPT where pY is phosphotyrosine) is thought to be a self-ligand for the SH2 domain. The structure of the SH2 domain resembles other SH2 domains except for a centrally located four-stranded antiparallel beta-sheet (strands betaA, betaB, betaC, and betaD). There are also differences in the loop length which might be responsible for PTK6 ligand specificity. There are two possible means of regulation of PTK6: autoinhibitory with the phosphorylation of Tyr playing a role in its negative regulation and autophosphorylation at this site, though it has been shown that PTK6 might phosphorylate signal transduction-associated proteins Sam68 and signal transducing adaptor family member 2 (STAP/BKS) in vivo. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 100

>gnl|CDD|198198 cd09945, SH2_SHB_SHD_SHE_SHF_like, Src homology 2 domain found in SH2 domain-containing adapter proteins B, D, E, and F (SHB, SHD, SHE, SHF)

 Score = 44.7 bits (106), Expect = 5e-06
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 3/85 (3%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
          WY G +TR EA+++L   K+ G++LVR+S +   +Y L +K      H  I +  N   Q
Sbjct: 3  WYHGAITRIEAESLLRPCKE-GSYLVRNSESTKQDYSLSLKSAKGFMHMRIQR--NETGQ 59

Query: 73 TCYKIGDKTFSDLPSLLAFYKVHYL 97
                 + F  +P ++  Y ++ L
Sbjct: 60 YILGQFSRPFETIPEMIRHYCLNKL 84

SHB, SHD, SHE, and SHF are SH2 domain-containing proteins that play various roles throughout the cell. SHB functions in generating signaling compounds in response to tyrosine kinase activation. SHB contains proline-rich motifs, a phosphotyrosine binding (PTB) domain, tyrosine phosphorylation sites, and a SH2 domain. SHB mediates certain aspects of platelet-derived growth factor (PDGF) receptor-, fibroblast growth factor (FGF) receptor-, neural growth factor (NGF) receptor TRKA-, T cell receptor-, interleukin-2 (IL-2) receptor- and focal adhesion kinase- (FAK) signaling. SRC-like FYN-Related Kinase FRK/RAK (also named BSK/IYK or GTK) and SHB regulate apoptosis, proliferation and differentiation. SHB promotes apoptosis and is also required for proper mitogenicity, spreading and tubular morphogenesis in endothelial cells. SHB also plays a role in preventing early cavitation of embryoid bodies and reduces differentiation to cells expressing albumin, amylase, insulin and glucagon. SHB is a multifunctional protein that has difference responses in different cells under various conditions. SHE is expressed in heart, lung, brain, and skeletal muscle, while expression of SHD is restricted to the brain. SHF is mainly expressed in skeletal muscle, brain, liver, prostate, testis, ovary, small intestine, and colon. SHD may be a physiological substrate of c-Abl and may function as an adapter protein in the central nervous system. It is also thought to be involved in apoptotic regulation. SHD contains five YXXP motifs, a substrate sequence preferred by Abl tyrosine kinases, in addition to a poly-proline rich region and a C-terminal SH2 domain. SHE contains two pTry protein binding domains, protein interaction domain (PID) and a SH2 domain, followed by a glycine-proline rich region, all of which are N-terminal to the phosphotyrosine binding (PTB) domain. SHF contains four putative tyrosine phosphorylation sites and an SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 98

>gnl|CDD|198198 cd09945, SH2_SHB_SHD_SHE_SHF_like, Src homology 2 domain found in SH2 domain-containing adapter proteins B, D, E, and F (SHB, SHD, SHE, SHF)

 Score = 44.7 bits (106), Expect = 5e-06
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 3/85 (3%)

Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 347
           WY G +TR EA+++L   K+ G++LVR+S +   +Y L +K      H  I +  N   Q
Sbjct: 3   WYHGAITRIEAESLLRPCKE-GSYLVRNSESTKQDYSLSLKSAKGFMHMRIQR--NETGQ 59

Query: 348 TCYKIGDKTFSDLPSLLAFYKVHYL 372
                  + F  +P ++  Y ++ L
Sbjct: 60  YILGQFSRPFETIPEMIRHYCLNKL 84

SHB, SHD, SHE, and SHF are SH2 domain-containing proteins that play various roles throughout the cell. SHB functions in generating signaling compounds in response to tyrosine kinase activation. SHB contains proline-rich motifs, a phosphotyrosine binding (PTB) domain, tyrosine phosphorylation sites, and a SH2 domain. SHB mediates certain aspects of platelet-derived growth factor (PDGF) receptor-, fibroblast growth factor (FGF) receptor-, neural growth factor (NGF) receptor TRKA-, T cell receptor-, interleukin-2 (IL-2) receptor- and focal adhesion kinase- (FAK) signaling. SRC-like FYN-Related Kinase FRK/RAK (also named BSK/IYK or GTK) and SHB regulate apoptosis, proliferation and differentiation. SHB promotes apoptosis and is also required for proper mitogenicity, spreading and tubular morphogenesis in endothelial cells. SHB also plays a role in preventing early cavitation of embryoid bodies and reduces differentiation to cells expressing albumin, amylase, insulin and glucagon. SHB is a multifunctional protein that has difference responses in different cells under various conditions. SHE is expressed in heart, lung, brain, and skeletal muscle, while expression of SHD is restricted to the brain. SHF is mainly expressed in skeletal muscle, brain, liver, prostate, testis, ovary, small intestine, and colon. SHD may be a physiological substrate of c-Abl and may function as an adapter protein in the central nervous system. It is also thought to be involved in apoptotic regulation. SHD contains five YXXP motifs, a substrate sequence preferred by Abl tyrosine kinases, in addition to a poly-proline rich region and a C-terminal SH2 domain. SHE contains two pTry protein binding domains, protein interaction domain (PID) and a SH2 domain, followed by a glycine-proline rich region, all of which are N-terminal to the phosphotyrosine binding (PTB) domain. SHF contains four putative tyrosine phosphorylation sites and an SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 98

>gnl|CDD|212772 cd11838, SH3_Intersectin_3, Third Src homology 3 domain (or SH3C) of Intersectin

 Score = 43.6 bits (103), Expect = 5e-06
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           IA Y ++ N+P DL F   D+++V  KD E WWT   I    G  P  YV+ 
Sbjct: 3   IALYPYESNEPGDLTFNAGDVILVTKKDGE-WWTG-TIGDRTGIFPSNYVRP 52

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The third SH3 domain (or SH3C) of ITSN1 has been shown to bind many proteins including dynamin1/2, CIN85, c-Cbl, SHIP2, Reps1, synaptojanin-1, and WNK, among others. The SH3C of ITSN2 has been shown to bind the K15 protein of Kaposi's sarcoma-associated herpesvirus. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212772 cd11838, SH3_Intersectin_3, Third Src homology 3 domain (or SH3C) of Intersectin

 Score = 43.6 bits (103), Expect = 5e-06
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 389 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 440
           IA Y ++ N+P DL F   D+++V  KD E WWT   I    G  P  YV+ 
Sbjct: 3   IALYPYESNEPGDLTFNAGDVILVTKKDGE-WWTG-TIGDRTGIFPSNYVRP 52

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The third SH3 domain (or SH3C) of ITSN1 has been shown to bind many proteins including dynamin1/2, CIN85, c-Cbl, SHIP2, Reps1, synaptojanin-1, and WNK, among others. The SH3C of ITSN2 has been shown to bind the K15 protein of Kaposi's sarcoma-associated herpesvirus. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|219499 pfam07653, SH3_2, Variant SH3 domain

 Score = 43.2 bits (103), Expect = 6e-06
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
                +D+   DP++L  KK D++ V+ KD+  WW  +   G  G +P  YV++
Sbjct: 1   YGRVIFDYVATDPNELSLKKGDVVKVLDKDDNGWWEGER-GGRRGLVPSSYVEE 53

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 53

>gnl|CDD|219499 pfam07653, SH3_2, Variant SH3 domain

 Score = 43.2 bits (103), Expect = 6e-06
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 440
                +D+   DP++L  KK D++ V+ KD+  WW  +   G  G +P  YV++
Sbjct: 1   YGRVIFDYVATDPNELSLKKGDVVKVLDKDDNGWWEGER-GGRRGLVPSSYVEE 53

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 53

>gnl|CDD|198226 cd10363, SH2_Src_HCK, Src homology 2 (SH2) domain found in HCK

 Score = 45.0 bits (106), Expect = 6e-06
 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 9/87 (10%)

Query: 13 WYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKI 66
          W+F  ++R++A+  LL+  +  G+F++RDS T  G+Y L V++      + V HY   KI
Sbjct: 5  WFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPQHGDTVKHY---KI 61

Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYK 93
             +    Y     TFS L  L+  YK
Sbjct: 62 RTLDNGGFYISPRSTFSTLQELVDHYK 88

HCK is a member of the Src non-receptor type tyrosine kinase family of proteins and is expressed in hemopoietic cells. HCK is proposed to couple the Fc receptor to the activation of the respiratory burst. It may also play a role in neutrophil migration and in the degranulation of neutrophils. It has two different translational starts that have different subcellular localization. HCK has been shown to interact with BCR gene, ELMO1 Cbl gene, RAS p21 protein activator 1, RASA3, Granulocyte colony-stimulating factor receptor, ADAM15 and RAPGEF1. Like the other members of the Src family the SH2 domain in addition to binding the target, also plays an autoinhibitory role by binding to its C-terminal tail. In general SH2 domains are involved in signal transduction. HCK has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|198226 cd10363, SH2_Src_HCK, Src homology 2 (SH2) domain found in HCK

 Score = 45.0 bits (106), Expect = 6e-06
 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 9/87 (10%)

Query: 288 WYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKI 341
           W+F  ++R++A+  LL+  +  G+F++RDS T  G+Y L V++      + V HY   KI
Sbjct: 5   WFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPQHGDTVKHY---KI 61

Query: 342 TNTEQQTCYKIGDKTFSDLPSLLAFYK 368
              +    Y     TFS L  L+  YK
Sbjct: 62  RTLDNGGFYISPRSTFSTLQELVDHYK 88

HCK is a member of the Src non-receptor type tyrosine kinase family of proteins and is expressed in hemopoietic cells. HCK is proposed to couple the Fc receptor to the activation of the respiratory burst. It may also play a role in neutrophil migration and in the degranulation of neutrophils. It has two different translational starts that have different subcellular localization. HCK has been shown to interact with BCR gene, ELMO1 Cbl gene, RAS p21 protein activator 1, RASA3, Granulocyte colony-stimulating factor receptor, ADAM15 and RAPGEF1. Like the other members of the Src family the SH2 domain in addition to binding the target, also plays an autoinhibitory role by binding to its C-terminal tail. In general SH2 domains are involved in signal transduction. HCK has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|198231 cd10368, SH2_Src_Fyn, Src homology 2 (SH2) domain found in Fyn

 Score = 44.6 bits (105), Expect = 6e-06
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 6/62 (9%)

Query: 13 WYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKI 66
          WYFG + R++A+  LLS  +  G FL+R+S T  G Y L +++      + V HY I K+
Sbjct: 5  WYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKL 64

Query: 67 TN 68
           N
Sbjct: 65 DN 66

Fyn is a member of the Src non-receptor type tyrosine kinase family of proteins. Fyn is involved in the control of cell growth and is required in the following pathways: T and B cell receptor signaling, integrin-mediated signaling, growth factor and cytokine receptor signaling, platelet activation, ion channel function, cell adhesion, axon guidance, fertilization, entry into mitosis, and differentiation of natural killer cells, oligodendrocytes and keratinocytes. The protein associates with the p85 subunit of phosphatidylinositol 3-kinase and interacts with the Fyn-binding protein. Alternatively spliced transcript variants encoding distinct isoforms exist. Fyn is primarily localized to the cytoplasmic leaflet of the plasma membrane. Tyrosine phosphorylation of target proteins by Fyn serves to either regulate target protein activity, and/or to generate a binding site on the target protein that recruits other signaling molecules. FYN has been shown to interact with a number of proteins including: BCAR1, Cbl, Janus kinase, nephrin, Sky, tyrosine kinase, Wiskott-Aldrich syndrome protein, and Zap-70. Fyn has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198231 cd10368, SH2_Src_Fyn, Src homology 2 (SH2) domain found in Fyn

 Score = 44.6 bits (105), Expect = 6e-06
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 6/62 (9%)

Query: 288 WYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKI 341
           WYFG + R++A+  LLS  +  G FL+R+S T  G Y L +++      + V HY I K+
Sbjct: 5   WYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKL 64

Query: 342 TN 343
            N
Sbjct: 65  DN 66

Fyn is a member of the Src non-receptor type tyrosine kinase family of proteins. Fyn is involved in the control of cell growth and is required in the following pathways: T and B cell receptor signaling, integrin-mediated signaling, growth factor and cytokine receptor signaling, platelet activation, ion channel function, cell adhesion, axon guidance, fertilization, entry into mitosis, and differentiation of natural killer cells, oligodendrocytes and keratinocytes. The protein associates with the p85 subunit of phosphatidylinositol 3-kinase and interacts with the Fyn-binding protein. Alternatively spliced transcript variants encoding distinct isoforms exist. Fyn is primarily localized to the cytoplasmic leaflet of the plasma membrane. Tyrosine phosphorylation of target proteins by Fyn serves to either regulate target protein activity, and/or to generate a binding site on the target protein that recruits other signaling molecules. FYN has been shown to interact with a number of proteins including: BCAR1, Cbl, Janus kinase, nephrin, Sky, tyrosine kinase, Wiskott-Aldrich syndrome protein, and Zap-70. Fyn has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|212889 cd11956, SH3_srGAP4, Src homology 3 domain of Slit-Robo GTPase Activating Protein 4

 Score = 43.3 bits (102), Expect = 6e-06
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
           +A +D+ G    +L FK+ D+L++ SK    WW  +  +G  G IP  Y+
Sbjct: 5   VACFDYTGRTAQELSFKRGDVLLLHSKASSDWWRGE-HNGMRGLIPHKYI 53

srGAP4, also called ARHGAP4, is highly expressed in hematopoietic cells and may play a role in lymphocyte differentiation. It is able to stimulate the GTPase activity of Rac1, Cdc42, and RhoA. In the nervous system, srGAP4 has been detected in differentiating neurites and may be involved in axon and dendritic growth. srGAPs are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212889 cd11956, SH3_srGAP4, Src homology 3 domain of Slit-Robo GTPase Activating Protein 4

 Score = 43.3 bits (102), Expect = 6e-06
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 389 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 438
           +A +D+ G    +L FK+ D+L++ SK    WW  +  +G  G IP  Y+
Sbjct: 5   VACFDYTGRTAQELSFKRGDVLLLHSKASSDWWRGE-HNGMRGLIPHKYI 53

srGAP4, also called ARHGAP4, is highly expressed in hematopoietic cells and may play a role in lymphocyte differentiation. It is able to stimulate the GTPase activity of Rac1, Cdc42, and RhoA. In the nervous system, srGAP4 has been detected in differentiating neurites and may be involved in axon and dendritic growth. srGAPs are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|214620 smart00326, SH3, Src homology 3 domains

 Score = 43.3 bits (103), Expect = 7e-06
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGELN-GKTGHFPFTHVE 260
            A D   L  + GDII V + + +G W+G L  GK G FP  +VE
Sbjct: 12  TAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVE 56

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations. Length = 56

>gnl|CDD|214620 smart00326, SH3, Src homology 3 domains

 Score = 43.3 bits (103), Expect = 7e-06
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 492 NAYDKTALKLEIGDIIKVTKTNINGQWEGELN-GKTGHFPFTHVE 535
            A D   L  + GDII V + + +G W+G L  GK G FP  +VE
Sbjct: 12  TAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVE 56

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations. Length = 56

>gnl|CDD|212753 cd11819, SH3_Cortactin_like, Src homology 3 domain of Cortactin and related proteins

 Score = 43.1 bits (102), Expect = 7e-06
 Identities = 15/51 (29%), Positives = 27/51 (52%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
            A YD+   + +++ F + DI+  + + +E WW   N  G+ G  P  YV+
Sbjct: 3   KALYDYQAAEDNEISFVEGDIITQIEQIDEGWWLGVNAKGQKGLFPANYVE 53

This subfamily includes cortactin, Abp1 (actin-binding protein 1), hematopoietic lineage cell-specific protein 1 (HS1), and similar proteins. These proteins are involved in regulating actin dynamics through direct or indirect interaction with the Arp2/3 complex, which is required to initiate actin polymerization. They all contain at least one C-terminal SH3 domain. Cortactin and HS1 bind Arp2/3 and actin through an N-terminal region that contains an acidic domain and several copies of a repeat domain found in cortactin and HS1. Abp1 binds actin via an N-terminal actin-depolymerizing factor (ADF) homology domain. Yeast Abp1 binds Arp2/3 directly through two acidic domains. Mammalian Abp1 does not directly interact with Arp2/3; instead, it regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. The C-terminal region of these proteins acts as an adaptor or scaffold that can connect membrane trafficking and signaling proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212753 cd11819, SH3_Cortactin_like, Src homology 3 domain of Cortactin and related proteins

 Score = 43.1 bits (102), Expect = 7e-06
 Identities = 15/51 (29%), Positives = 27/51 (52%)

Query: 389 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
            A YD+   + +++ F + DI+  + + +E WW   N  G+ G  P  YV+
Sbjct: 3   KALYDYQAAEDNEISFVEGDIITQIEQIDEGWWLGVNAKGQKGLFPANYVE 53

This subfamily includes cortactin, Abp1 (actin-binding protein 1), hematopoietic lineage cell-specific protein 1 (HS1), and similar proteins. These proteins are involved in regulating actin dynamics through direct or indirect interaction with the Arp2/3 complex, which is required to initiate actin polymerization. They all contain at least one C-terminal SH3 domain. Cortactin and HS1 bind Arp2/3 and actin through an N-terminal region that contains an acidic domain and several copies of a repeat domain found in cortactin and HS1. Abp1 binds actin via an N-terminal actin-depolymerizing factor (ADF) homology domain. Yeast Abp1 binds Arp2/3 directly through two acidic domains. Mammalian Abp1 does not directly interact with Arp2/3; instead, it regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. The C-terminal region of these proteins acts as an adaptor or scaffold that can connect membrane trafficking and signaling proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212882 cd11949, SH3_GRB2_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2

 Score = 43.3 bits (102), Expect = 7e-06
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           V A +DFD  +  +L F++ D + V+   + +WW      G+ G  P  YV 
Sbjct: 2   VQALFDFDPQEDGELGFRRGDFIEVMDNSDPNWWKGA-CHGQTGMFPRNYVT 52

GRB2 is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. It is ubiquitously expressed in all tissues throughout development and is important in cell cycle progression, motility, morphogenesis, and angiogenesis. In lymphocytes, GRB2 is associated with antigen receptor signaling components. GRB2 contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRB2 binds to Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, as well as to the proline-rich C-terminus of FGRF2. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212882 cd11949, SH3_GRB2_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2

 Score = 43.3 bits (102), Expect = 7e-06
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
           V A +DFD  +  +L F++ D + V+   + +WW      G+ G  P  YV 
Sbjct: 2   VQALFDFDPQEDGELGFRRGDFIEVMDNSDPNWWKGA-CHGQTGMFPRNYVT 52

GRB2 is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. It is ubiquitously expressed in all tissues throughout development and is important in cell cycle progression, motility, morphogenesis, and angiogenesis. In lymphocytes, GRB2 is associated with antigen receptor signaling components. GRB2 contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRB2 binds to Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, as well as to the proline-rich C-terminus of FGRF2. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212775 cd11841, SH3_SH3YL1_like, Src homology 3 domain of SH3 domain containing Ysc84-like 1 (SH3YL1) protein

 Score = 43.1 bits (102), Expect = 7e-06
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH--WWTAQNISGEVGSIPVPYVQ 164
           V A Y F+G  P DL F+  D + V+++ +    WW  + + G VG  P  YV 
Sbjct: 2   VTALYSFEGQQPCDLSFQAGDRITVLTRTDSQFDWWEGR-LRGRVGIFPANYVS 54

SH3YL1 localizes to the plasma membrane and is required for dorsal ruffle formation. It binds phosphoinositides (PIs) with high affinity through its N-terminal SYLF domain (also called DUF500). In addition, SH3YL1 contains a C-terminal SH3 domain which has been reported to bind to N-WASP, dynamin 2, and SHIP2 (a PI 5-phosphatase). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212775 cd11841, SH3_SH3YL1_like, Src homology 3 domain of SH3 domain containing Ysc84-like 1 (SH3YL1) protein

 Score = 43.1 bits (102), Expect = 7e-06
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH--WWTAQNISGEVGSIPVPYVQ 439
           V A Y F+G  P DL F+  D + V+++ +    WW  + + G VG  P  YV 
Sbjct: 2   VTALYSFEGQQPCDLSFQAGDRITVLTRTDSQFDWWEGR-LRGRVGIFPANYVS 54

SH3YL1 localizes to the plasma membrane and is required for dorsal ruffle formation. It binds phosphoinositides (PIs) with high affinity through its N-terminal SYLF domain (also called DUF500). In addition, SH3YL1 contains a C-terminal SH3 domain which has been reported to bind to N-WASP, dynamin 2, and SHIP2 (a PI 5-phosphatase). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212931 cd11998, SH3_PACSIN1-2, Src homology 3 domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1) and PACSIN 2

 Score = 43.0 bits (101), Expect = 8e-06
 Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVV-SKDEEHWWTAQNISGEVGSIPVPYVQ 164
           +V A YD+DG + D+L FK  D L  +  +DE+ W   +  SG+VG  P  YV+
Sbjct: 2   RVRALYDYDGQEQDELSFKAGDELTKLEDEDEQGWCKGRLDSGQVGLYPANYVE 55

PACSIN 1 or Syndapin I (Synaptic dynamin-associated protein I) is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropathology of Huntington's disease. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSINs act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212931 cd11998, SH3_PACSIN1-2, Src homology 3 domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1) and PACSIN 2

 Score = 43.0 bits (101), Expect = 8e-06
 Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVV-SKDEEHWWTAQNISGEVGSIPVPYVQ 439
           +V A YD+DG + D+L FK  D L  +  +DE+ W   +  SG+VG  P  YV+
Sbjct: 2   RVRALYDYDGQEQDELSFKAGDELTKLEDEDEQGWCKGRLDSGQVGLYPANYVE 55

PACSIN 1 or Syndapin I (Synaptic dynamin-associated protein I) is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropathology of Huntington's disease. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSINs act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212806 cd11873, SH3_CD2AP-like_1, First Src Homology 3 domain (SH3A) of CD2-associated protein and similar proteins

 Score = 42.6 bits (101), Expect = 9e-06
 Identities = 19/37 (51%), Positives = 22/37 (59%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
           L L++GDII   K    G WEG LNGK G FP   V+
Sbjct: 16  LTLKVGDIITNVKKMEEGWWEGTLNGKRGMFPDNFVK 52

This subfamily is composed of the first SH3 domain (SH3A) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3A of both proteins bind to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic domain of the cell adhesion protein CD2. CIN85 SH3A binds to internal proline-rich motifs within the proline-rich region; this intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. CIN85 SH3A has also been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212806 cd11873, SH3_CD2AP-like_1, First Src Homology 3 domain (SH3A) of CD2-associated protein and similar proteins

 Score = 42.6 bits (101), Expect = 9e-06
 Identities = 19/37 (51%), Positives = 22/37 (59%)

Query: 499 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 535
           L L++GDII   K    G WEG LNGK G FP   V+
Sbjct: 16  LTLKVGDIITNVKKMEEGWWEGTLNGKRGMFPDNFVK 52

This subfamily is composed of the first SH3 domain (SH3A) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3A of both proteins bind to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic domain of the cell adhesion protein CD2. CIN85 SH3A binds to internal proline-rich motifs within the proline-rich region; this intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. CIN85 SH3A has also been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212988 cd12055, SH3_CIN85_2, Second Src Homology 3 domain (SH3B) of Cbl-interacting protein of 85 kDa

 Score = 42.7 bits (100), Expect = 1e-05
 Identities = 21/41 (51%), Positives = 27/41 (65%), Gaps = 2/41 (4%)

Query: 215 VPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFP 255
           +P   D+  L+L++GDII+V      G WEG LNGKTG FP
Sbjct: 9   LPQNEDE--LELKVGDIIEVVGEVEEGWWEGVLNGKTGMFP 47

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the second SH3 domain (SH3B) of CIN85. SH3B has been shown to bind Cbl proline-rich peptides and ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212988 cd12055, SH3_CIN85_2, Second Src Homology 3 domain (SH3B) of Cbl-interacting protein of 85 kDa

 Score = 42.7 bits (100), Expect = 1e-05
 Identities = 21/41 (51%), Positives = 27/41 (65%), Gaps = 2/41 (4%)

Query: 490 VPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFP 530
           +P   D+  L+L++GDII+V      G WEG LNGKTG FP
Sbjct: 9   LPQNEDE--LELKVGDIIEVVGEVEEGWWEGVLNGKTGMFP 47

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the second SH3 domain (SH3B) of CIN85. SH3B has been shown to bind Cbl proline-rich peptides and ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212879 cd11946, SH3_GRB2_N, N-terminal Src homology 3 domain of Growth factor receptor-bound protein 2

 Score = 42.7 bits (100), Expect = 1e-05
 Identities = 20/53 (37%), Positives = 33/53 (62%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           + IAKYDF     D+L FK+ DIL V++++ +  W    ++G+ G IP  Y++
Sbjct: 2   EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIE 54

GRB2 is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. It is ubiquitously expressed in all tissues throughout development and is important in cell cycle progression, motility, morphogenesis, and angiogenesis. In lymphocytes, GRB2 is associated with antigen receptor signaling components. GRB2 contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. Its N-terminal SH3 domain binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212879 cd11946, SH3_GRB2_N, N-terminal Src homology 3 domain of Growth factor receptor-bound protein 2

 Score = 42.7 bits (100), Expect = 1e-05
 Identities = 20/53 (37%), Positives = 33/53 (62%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
           + IAKYDF     D+L FK+ DIL V++++ +  W    ++G+ G IP  Y++
Sbjct: 2   EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIE 54

GRB2 is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. It is ubiquitously expressed in all tissues throughout development and is important in cell cycle progression, motility, morphogenesis, and angiogenesis. In lymphocytes, GRB2 is associated with antigen receptor signaling components. GRB2 contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. Its N-terminal SH3 domain binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|198282 cd10419, SH2_Src_Fyn_isoform_b_like, Src homology 2 (SH2) domain found in Fyn isoform b like proteins

 Score = 43.9 bits (103), Expect = 1e-05
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 6/62 (9%)

Query: 13 WYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKI 66
          WYFG + R++A+  LLS  +  G FL+R+S T  G Y L +++      + V HY I K+
Sbjct: 5  WYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKL 64

Query: 67 TN 68
           N
Sbjct: 65 DN 66

Fyn is a member of the Src non-receptor type tyrosine kinase family of proteins. This cd contains the SH2 domain found in Fyn isoform b type proteins. Fyn is involved in the control of cell growth and is required in the following pathways: T and B cell receptor signaling, integrin-mediated signaling, growth factor and cytokine receptor signaling, platelet activation, ion channel function, cell adhesion, axon guidance, fertilization, entry into mitosis, and differentiation of natural killer cells, oligodendrocytes and keratinocytes. The protein associates with the p85 subunit of phosphatidylinositol 3-kinase and interacts with the Fyn-binding protein. Alternatively spliced transcript variants encoding distinct isoforms exist. Fyn is primarily localized to the cytoplasmic leaflet of the plasma membrane. Tyrosine phosphorylation of target proteins by Fyn serves to either regulate target protein activity, and/or to generate a binding site on the target protein that recruits other signaling molecules. FYN has been shown to interact with a number of proteins including: BCAR1, Cbl, Janus kinase, nephrin, Sky, tyrosine kinase, Wiskott-Aldrich syndrome protein, and Zap-70. Fyn has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198282 cd10419, SH2_Src_Fyn_isoform_b_like, Src homology 2 (SH2) domain found in Fyn isoform b like proteins

 Score = 43.9 bits (103), Expect = 1e-05
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 6/62 (9%)

Query: 288 WYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKI 341
           WYFG + R++A+  LLS  +  G FL+R+S T  G Y L +++      + V HY I K+
Sbjct: 5   WYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKL 64

Query: 342 TN 343
            N
Sbjct: 65  DN 66

Fyn is a member of the Src non-receptor type tyrosine kinase family of proteins. This cd contains the SH2 domain found in Fyn isoform b type proteins. Fyn is involved in the control of cell growth and is required in the following pathways: T and B cell receptor signaling, integrin-mediated signaling, growth factor and cytokine receptor signaling, platelet activation, ion channel function, cell adhesion, axon guidance, fertilization, entry into mitosis, and differentiation of natural killer cells, oligodendrocytes and keratinocytes. The protein associates with the p85 subunit of phosphatidylinositol 3-kinase and interacts with the Fyn-binding protein. Alternatively spliced transcript variants encoding distinct isoforms exist. Fyn is primarily localized to the cytoplasmic leaflet of the plasma membrane. Tyrosine phosphorylation of target proteins by Fyn serves to either regulate target protein activity, and/or to generate a binding site on the target protein that recruits other signaling molecules. FYN has been shown to interact with a number of proteins including: BCAR1, Cbl, Janus kinase, nephrin, Sky, tyrosine kinase, Wiskott-Aldrich syndrome protein, and Zap-70. Fyn has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198260 cd10397, SH2_Tec_Btk, Src homology 2 (SH2) domain found in Tec protein, Bruton's tyrosine kinase (Btk)

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 12/95 (12%)

Query: 6  DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCV------KENNKVS 59
          D  +   WY   MTR +A+ +L  E   G F+VRDS +  G Y + V           + 
Sbjct: 1  DSLEMYEWYSKNMTRSQAEQLLKQEGKEGGFIVRDS-SKAGKYTVSVFAKSAGDPQGVIR 59

Query: 60 HYIINKITNTEQQTCYKIGDK-TFSDLPSLLAFYK 93
          HY++     +  Q+ Y + +K  FS +P L+ +++
Sbjct: 60 HYVV----CSTPQSQYYLAEKHLFSTIPELINYHQ 90

A member of the Tec protein tyrosine kinase Btk is expressed in bone marrow, spleen, all hematopoietic cells except T lymphocytes and plasma cells where it plays a crucial role in B cell maturation and mast cell activation. Btk has been shown to interact with GNAQ, PLCG2, protein kinase D1, B-cell linker, SH3BP5, caveolin 1, ARID3A, and GTF2I. Most of the Tec family members have a PH domain (Txk and the short (type 1) splice variant of Drosophila Btk29A are exceptions), a Tec homology (TH) domain, a SH3 domain, a SH2 domain, and a protein kinase catalytic domain. Btk is implicated in the primary immunodeficiency disease X-linked agammaglobulinemia (Bruton's agammaglobulinemia). The TH domain consists of a Zn2+-binding Btk motif and a proline-rich region. The Btk motif is found in Tec kinases, Ras GAP, and IGBP. It is crucial for the function of Tec PH domains and it's lack of presence in Txk is not surprising since it lacks a PH domain. The type 1 splice form of the Drosophila homolog also lacks both the PH domain and the Btk motif. The proline-rich regions are highly conserved for the most part with the exception of Bmx whose residues surrounding the PXXP motif are not conserved (TH-like) and Btk29A which is entirely unique with large numbers of glycine residues (TH-extended). Tec family members all lack a C-terminal tyrosine having an autoinhibitory function in its phosphorylated state. Two tyrosine phosphorylation (pY) sites have been identified in Btk: one located in the activation loop of the catalytic domain which regulates the transition between open (active) and closed (inactive) states and the other in its SH3 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 106

>gnl|CDD|198260 cd10397, SH2_Tec_Btk, Src homology 2 (SH2) domain found in Tec protein, Bruton's tyrosine kinase (Btk)

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 12/95 (12%)

Query: 281 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCV------KENNKVS 334
           D  +   WY   MTR +A+ +L  E   G F+VRDS +  G Y + V           + 
Sbjct: 1   DSLEMYEWYSKNMTRSQAEQLLKQEGKEGGFIVRDS-SKAGKYTVSVFAKSAGDPQGVIR 59

Query: 335 HYIINKITNTEQQTCYKIGDK-TFSDLPSLLAFYK 368
           HY++     +  Q+ Y + +K  FS +P L+ +++
Sbjct: 60  HYVV----CSTPQSQYYLAEKHLFSTIPELINYHQ 90

A member of the Tec protein tyrosine kinase Btk is expressed in bone marrow, spleen, all hematopoietic cells except T lymphocytes and plasma cells where it plays a crucial role in B cell maturation and mast cell activation. Btk has been shown to interact with GNAQ, PLCG2, protein kinase D1, B-cell linker, SH3BP5, caveolin 1, ARID3A, and GTF2I. Most of the Tec family members have a PH domain (Txk and the short (type 1) splice variant of Drosophila Btk29A are exceptions), a Tec homology (TH) domain, a SH3 domain, a SH2 domain, and a protein kinase catalytic domain. Btk is implicated in the primary immunodeficiency disease X-linked agammaglobulinemia (Bruton's agammaglobulinemia). The TH domain consists of a Zn2+-binding Btk motif and a proline-rich region. The Btk motif is found in Tec kinases, Ras GAP, and IGBP. It is crucial for the function of Tec PH domains and it's lack of presence in Txk is not surprising since it lacks a PH domain. The type 1 splice form of the Drosophila homolog also lacks both the PH domain and the Btk motif. The proline-rich regions are highly conserved for the most part with the exception of Bmx whose residues surrounding the PXXP motif are not conserved (TH-like) and Btk29A which is entirely unique with large numbers of glycine residues (TH-extended). Tec family members all lack a C-terminal tyrosine having an autoinhibitory function in its phosphorylated state. Two tyrosine phosphorylation (pY) sites have been identified in Btk: one located in the activation loop of the catalytic domain which regulates the transition between open (active) and closed (inactive) states and the other in its SH3 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 106

>gnl|CDD|198270 cd10407, SH2_Vav3, Src homology 2 (SH2) domain found in the Vav3 proteins

 Score = 43.8 bits (103), Expect = 1e-05
 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 7/86 (8%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
          WY G M R +A+  L++ + N  +LVR      G Y + +K NN+V H     I    + 
Sbjct: 7  WYAGAMERLQAETELIN-RVNSTYLVRHRTKESGEYAISIKYNNEVKH-----IKILTRD 60

Query: 73 TCYKIGD-KTFSDLPSLLAFYKVHYL 97
            + I + + F  L  L+ +YK H L
Sbjct: 61 GFFHIAENRKFKSLMELVEYYKHHSL 86

Proto-oncogene vav is a member of the Dbl family of guanine nucleotide exchange factors (GEF) for the Rho family of GTP binding proteins. All vavs are activated by tyrosine phosphorylation leading to their activation. There are three Vav mammalian family members: Vav1 which is expressed in the hematopoietic system, and Vav2 and Vav3 are more ubiquitously expressed. Vav3 preferentially activates RhoA, RhoG and, to a lesser extent, Rac1. Alternatively spliced transcript variants encoding different isoforms have been described for this gene. VAV3 has been shown to interact with Grb2. Vav proteins are involved in several processes that require cytoskeletal reorganization, such as the formation of the immunological synapse (IS), phagocytosis, platelet aggregation, spreading, and transformation. Vavs function as guanine nucleotide exchange factors (GEFs) for the Rho/Rac family of GTPases. Vav family members have several conserved motifs/domains including: a leucine-rich region, a leucine-zipper, a calponin homology (CH) domain, an acidic domain, a Dbl-homology (DH) domain, a pleckstrin homology (PH) domain, a cysteine-rich domain, 2 SH3 domains, a proline-rich region, and a SH2 domain. Vavs are the only known Rho GEFs that have both the DH/PH motifs and SH2/SH3 domains in the same protein. The leucine-rich helix-loop-helix (HLH) domain is thought to be involved in protein heterodimerization with other HLH proteins and it may function as a negative regulator by forming inactive heterodimers. The CH domain is usually involved in the association with filamentous actin, but in Vav it controls NFAT stimulation, Ca2+ mobilization, and its transforming activity. Acidic domains are involved in protein-protein interactions and contain regulatory tyrosines. The DH domain is a GDP-GTP exchange factor on Rho/Rac GTPases. The PH domain in involved in interactions with GTP-binding proteins, lipids and/or phosphorylated serine/threonine residues. The SH3 domain is involved in localization of proteins to specific sites within the cell interacting with protein with proline-rich sequences. The SH2 domain mediates a high affinity interaction with tyrosine phosphorylated proteins. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|198270 cd10407, SH2_Vav3, Src homology 2 (SH2) domain found in the Vav3 proteins

 Score = 43.8 bits (103), Expect = 1e-05
 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 7/86 (8%)

Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 347
           WY G M R +A+  L++ + N  +LVR      G Y + +K NN+V H     I    + 
Sbjct: 7   WYAGAMERLQAETELIN-RVNSTYLVRHRTKESGEYAISIKYNNEVKH-----IKILTRD 60

Query: 348 TCYKIGD-KTFSDLPSLLAFYKVHYL 372
             + I + + F  L  L+ +YK H L
Sbjct: 61  GFFHIAENRKFKSLMELVEYYKHHSL 86

Proto-oncogene vav is a member of the Dbl family of guanine nucleotide exchange factors (GEF) for the Rho family of GTP binding proteins. All vavs are activated by tyrosine phosphorylation leading to their activation. There are three Vav mammalian family members: Vav1 which is expressed in the hematopoietic system, and Vav2 and Vav3 are more ubiquitously expressed. Vav3 preferentially activates RhoA, RhoG and, to a lesser extent, Rac1. Alternatively spliced transcript variants encoding different isoforms have been described for this gene. VAV3 has been shown to interact with Grb2. Vav proteins are involved in several processes that require cytoskeletal reorganization, such as the formation of the immunological synapse (IS), phagocytosis, platelet aggregation, spreading, and transformation. Vavs function as guanine nucleotide exchange factors (GEFs) for the Rho/Rac family of GTPases. Vav family members have several conserved motifs/domains including: a leucine-rich region, a leucine-zipper, a calponin homology (CH) domain, an acidic domain, a Dbl-homology (DH) domain, a pleckstrin homology (PH) domain, a cysteine-rich domain, 2 SH3 domains, a proline-rich region, and a SH2 domain. Vavs are the only known Rho GEFs that have both the DH/PH motifs and SH2/SH3 domains in the same protein. The leucine-rich helix-loop-helix (HLH) domain is thought to be involved in protein heterodimerization with other HLH proteins and it may function as a negative regulator by forming inactive heterodimers. The CH domain is usually involved in the association with filamentous actin, but in Vav it controls NFAT stimulation, Ca2+ mobilization, and its transforming activity. Acidic domains are involved in protein-protein interactions and contain regulatory tyrosines. The DH domain is a GDP-GTP exchange factor on Rho/Rac GTPases. The PH domain in involved in interactions with GTP-binding proteins, lipids and/or phosphorylated serine/threonine residues. The SH3 domain is involved in localization of proteins to specific sites within the cell interacting with protein with proline-rich sequences. The SH2 domain mediates a high affinity interaction with tyrosine phosphorylated proteins. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|212930 cd11997, SH3_PACSIN3, Src homology 3 domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3)

 Score = 42.3 bits (99), Expect = 1e-05
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVS-KDEEHWWTAQNISGEVGSIPVPYVQ 164
           +V A YD+ G + D+L FK  + L+ +  +DE+ W   + +SG +G  P  YV+
Sbjct: 3   RVRALYDYTGQEADELSFKAGEELLKIGEEDEQGWCKGRLLSGRIGLYPANYVE 56

PACSIN 3 or Syndapin III (Synaptic dynamin-associated protein III) is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSINs act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212930 cd11997, SH3_PACSIN3, Src homology 3 domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3)

 Score = 42.3 bits (99), Expect = 1e-05
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVS-KDEEHWWTAQNISGEVGSIPVPYVQ 439
           +V A YD+ G + D+L FK  + L+ +  +DE+ W   + +SG +G  P  YV+
Sbjct: 3   RVRALYDYTGQEADELSFKAGEELLKIGEEDEQGWCKGRLLSGRIGLYPANYVE 56

PACSIN 3 or Syndapin III (Synaptic dynamin-associated protein III) is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSINs act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212807 cd11874, SH3_CD2AP-like_2, Second Src Homology 3 domain (SH3B) of CD2-associated protein and similar proteins

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 18/37 (48%), Positives = 24/37 (64%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
           L+L++GD I+V      G WEG+LNGK G FP   V+
Sbjct: 16  LELKVGDTIEVLGEVEEGWWEGKLNGKVGVFPSNFVK 52

This subfamily is composed of the second SH3 domain (SH3B) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3B of both proteins have been shown to bind to Cbl. In the case of CD2AP, its SH3B binds to Cbl at a site distinct from the c-Cbl/SH3A binding site. The CIN85 SH3B also binds ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212807 cd11874, SH3_CD2AP-like_2, Second Src Homology 3 domain (SH3B) of CD2-associated protein and similar proteins

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 18/37 (48%), Positives = 24/37 (64%)

Query: 499 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 535
           L+L++GD I+V      G WEG+LNGK G FP   V+
Sbjct: 16  LELKVGDTIEVLGEVEEGWWEGKLNGKVGVFPSNFVK 52

This subfamily is composed of the second SH3 domain (SH3B) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3B of both proteins have been shown to bind to Cbl. In the case of CD2AP, its SH3B binds to Cbl at a site distinct from the c-Cbl/SH3A binding site. The CIN85 SH3B also binds ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|198207 cd10344, SH2_SLAP, Src homology 2 domain found in Src-like adaptor proteins

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 9/88 (10%)

Query: 11 NSWYFGMMTRQEAQAIL-LSEKDNGAFLVRDSNTILGNYVLCVK-----ENNKVSHYIIN 64
          + W F  ++R++A+ +L L     G+FL+R+S T  G Y L V+       + V HY I 
Sbjct: 10 HGWLFEGLSREKAEELLMLPGNQVGSFLIRESETRRGCYSLSVRHRGSQSRDSVKHYRIF 69

Query: 65 KITNTEQQTCYKIGDKTFSDLPSLLAFY 92
          ++ N      Y     TF  L  ++  Y
Sbjct: 70 RLDNG---WFYISPRLTFQCLEDMVNHY 94

SLAP belongs to the subfamily of adapter proteins that negatively regulate cellular signaling initiated by tyrosine kinases. It has a myristylated N-terminus, SH3 and SH2 domains with high homology to Src family tyrosine kinases, and a unique C-terminal tail, which is important for c-Cbl binding. SLAP negatively regulates platelet-derived growth factor (PDGF)-induced mitogenesis in fibroblasts and regulates F-actin assembly for dorsal ruffles formation. c-Cbl mediated SLAP inhibition towards actin remodeling. Moreover, SLAP enhanced PDGF-induced c-Cbl phosphorylation by SFK. In contrast, SLAP mitogenic inhibition was not mediated by c-Cbl, but it rather involved a competitive mechanism with SFK for PDGF-receptor (PDGFR) association and mitogenic signaling. Accordingly, phosphorylation of the Src mitogenic substrates Stat3 and Shc were reduced by SLAP. Thus, we concluded that SLAP regulates PDGFR signaling by two independent mechanisms: a competitive mechanism for PDGF-induced Src mitogenic signaling and a non-competitive mechanism for dorsal ruffles formation mediated by c-Cbl. SLAP is a hematopoietic adaptor containing Src homology (SH)3 and SH2 motifs and a unique carboxy terminus. Unlike c-Src, SLAP lacks a tyrosine kinase domain. Unlike c-Src, SLAP does not impact resorptive function of mature osteoclasts but induces their early apoptosis. SLAP negatively regulates differentiation of osteoclasts and proliferation of their precursors. Conversely, SLAP decreases osteoclast death by inhibiting activation of caspase 3. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|198207 cd10344, SH2_SLAP, Src homology 2 domain found in Src-like adaptor proteins

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 9/88 (10%)

Query: 286 NSWYFGMMTRQEAQAIL-LSEKDNGAFLVRDSNTILGNYVLCVK-----ENNKVSHYIIN 339
           + W F  ++R++A+ +L L     G+FL+R+S T  G Y L V+       + V HY I 
Sbjct: 10  HGWLFEGLSREKAEELLMLPGNQVGSFLIRESETRRGCYSLSVRHRGSQSRDSVKHYRIF 69

Query: 340 KITNTEQQTCYKIGDKTFSDLPSLLAFY 367
           ++ N      Y     TF  L  ++  Y
Sbjct: 70  RLDNG---WFYISPRLTFQCLEDMVNHY 94

SLAP belongs to the subfamily of adapter proteins that negatively regulate cellular signaling initiated by tyrosine kinases. It has a myristylated N-terminus, SH3 and SH2 domains with high homology to Src family tyrosine kinases, and a unique C-terminal tail, which is important for c-Cbl binding. SLAP negatively regulates platelet-derived growth factor (PDGF)-induced mitogenesis in fibroblasts and regulates F-actin assembly for dorsal ruffles formation. c-Cbl mediated SLAP inhibition towards actin remodeling. Moreover, SLAP enhanced PDGF-induced c-Cbl phosphorylation by SFK. In contrast, SLAP mitogenic inhibition was not mediated by c-Cbl, but it rather involved a competitive mechanism with SFK for PDGF-receptor (PDGFR) association and mitogenic signaling. Accordingly, phosphorylation of the Src mitogenic substrates Stat3 and Shc were reduced by SLAP. Thus, we concluded that SLAP regulates PDGFR signaling by two independent mechanisms: a competitive mechanism for PDGF-induced Src mitogenic signaling and a non-competitive mechanism for dorsal ruffles formation mediated by c-Cbl. SLAP is a hematopoietic adaptor containing Src homology (SH)3 and SH2 motifs and a unique carboxy terminus. Unlike c-Src, SLAP lacks a tyrosine kinase domain. Unlike c-Src, SLAP does not impact resorptive function of mature osteoclasts but induces their early apoptosis. SLAP negatively regulates differentiation of osteoclasts and proliferation of their precursors. Conversely, SLAP decreases osteoclast death by inhibiting activation of caspase 3. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|212741 cd11807, SH3_ASPP, Src homology 3 domain of Apoptosis Stimulating of p53 proteins (ASPP)

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 4/50 (8%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSK---DEEHWWTAQNISGEVGSIP 159
           V A +D++  + D+L F++ D L V+ K   DE  WW A+  + + G +P
Sbjct: 3   VYALFDYEAENGDELSFREGDELTVLRKGDDDETEWWWARL-NDKEGYVP 51

The ASPP family of proteins bind to important regulators of apoptosis (p53, Bcl-2, and RelA) and cell growth (APCL, PP1). They share similarity at their C-termini, where they harbor a proline-rich region, four ankyrin (ANK) repeats, and an SH3 domain. Vertebrates contain three members of the family: ASPP1, ASPP2, and iASPP. ASPP1 and ASPP2 activate the apoptotic function of the p53 family of tumor suppressors (p53, p63, and p73), while iASPP is an oncoprotein that specifically inhibits p53-induced apoptosis. The expression of ASPP proteins is altered in tumors; ASPP1 and ASPP2 are downregulated whereas iASPP is upregulated is some cancer types. ASPP proteins also bind and regulate protein phosphatase 1 (PP1), and this binding is competitive with p53 binding. The SH3 domain and the ANK repeats of ASPP contribute to the p53 binding site; they bind to the DNA binding domain of p53. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212741 cd11807, SH3_ASPP, Src homology 3 domain of Apoptosis Stimulating of p53 proteins (ASPP)

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 4/50 (8%)

Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSK---DEEHWWTAQNISGEVGSIP 434
           V A +D++  + D+L F++ D L V+ K   DE  WW A+  + + G +P
Sbjct: 3   VYALFDYEAENGDELSFREGDELTVLRKGDDDETEWWWARL-NDKEGYVP 51

The ASPP family of proteins bind to important regulators of apoptosis (p53, Bcl-2, and RelA) and cell growth (APCL, PP1). They share similarity at their C-termini, where they harbor a proline-rich region, four ankyrin (ANK) repeats, and an SH3 domain. Vertebrates contain three members of the family: ASPP1, ASPP2, and iASPP. ASPP1 and ASPP2 activate the apoptotic function of the p53 family of tumor suppressors (p53, p63, and p73), while iASPP is an oncoprotein that specifically inhibits p53-induced apoptosis. The expression of ASPP proteins is altered in tumors; ASPP1 and ASPP2 are downregulated whereas iASPP is upregulated is some cancer types. ASPP proteins also bind and regulate protein phosphatase 1 (PP1), and this binding is competitive with p53 binding. The SH3 domain and the ANK repeats of ASPP contribute to the p53 binding site; they bind to the DNA binding domain of p53. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212888 cd11955, SH3_srGAP1-3, Src homology 3 domain of Slit-Robo GTPase Activating Proteins 1, 2, and 3

 Score = 42.2 bits (99), Expect = 1e-05
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
           IAK+D+ G    +L FKK   L++  +  + WW  ++ +G  G +P  Y+
Sbjct: 3   IAKFDYVGRSARELSFKKGASLLLYHRASDDWWEGRH-NGIDGLVPHQYI 51

srGAP1, also called Rho GTPase-Activating Protein 13 (ARHGAP13), is a Cdc42- and RhoA-specific GAP and is expressed later in the development of central nervous system tissues. srGAP2 is expressed in zones of neuronal differentiation. It plays a role in the regeneration of neurons and axons. srGAP3, also called MEGAP (MEntal disorder associated GTPase-Activating Protein), is a Rho GAP with activity towards Rac1 and Cdc42. It impacts cell migration by regulating actin and microtubule cytoskeletal dynamics. The association between srGAP3 haploinsufficiency and mental retardation is under debate. srGAPs are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212888 cd11955, SH3_srGAP1-3, Src homology 3 domain of Slit-Robo GTPase Activating Proteins 1, 2, and 3

 Score = 42.2 bits (99), Expect = 1e-05
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 389 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 438
           IAK+D+ G    +L FKK   L++  +  + WW  ++ +G  G +P  Y+
Sbjct: 3   IAKFDYVGRSARELSFKKGASLLLYHRASDDWWEGRH-NGIDGLVPHQYI 51

srGAP1, also called Rho GTPase-Activating Protein 13 (ARHGAP13), is a Cdc42- and RhoA-specific GAP and is expressed later in the development of central nervous system tissues. srGAP2 is expressed in zones of neuronal differentiation. It plays a role in the regeneration of neurons and axons. srGAP3, also called MEGAP (MEntal disorder associated GTPase-Activating Protein), is a Rho GAP with activity towards Rac1 and Cdc42. It impacts cell migration by regulating actin and microtubule cytoskeletal dynamics. The association between srGAP3 haploinsufficiency and mental retardation is under debate. srGAPs are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212737 cd11803, SH3_Endophilin_A, Src homology 3 domain of Endophilin-A

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 17/50 (34%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           A YDF+  +  +L FK+ DI+ + ++ +E+W+    ++G+ G  PV YV+
Sbjct: 5   ALYDFEPENEGELGFKEGDIITLTNQIDENWYEGM-VNGQSGFFPVNYVE 53

Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms (A1, A2, and A3). Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. They tubulate membranes and regulate calcium influx into neurons to trigger the activation of the endocytic machinery. They are also involved in the sorting of plasma membrane proteins, actin filament assembly, and the uncoating of clathrin-coated vesicles for fusion with endosomes. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212737 cd11803, SH3_Endophilin_A, Src homology 3 domain of Endophilin-A

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 17/50 (34%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 390 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
           A YDF+  +  +L FK+ DI+ + ++ +E+W+    ++G+ G  PV YV+
Sbjct: 5   ALYDFEPENEGELGFKEGDIITLTNQIDENWYEGM-VNGQSGFFPVNYVE 53

Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms (A1, A2, and A3). Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. They tubulate membranes and regulate calcium influx into neurons to trigger the activation of the endocytic machinery. They are also involved in the sorting of plasma membrane proteins, actin filament assembly, and the uncoating of clathrin-coated vesicles for fusion with endosomes. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212698 cd11764, SH3_Eps8, Src Homology 3 domain of Epidermal growth factor receptor kinase substrate 8 and similar proteins

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIP 159
           V   YDF   +  +L   K + L V+  D   WW  +N  G+VG +P
Sbjct: 2   VRVLYDFTARNSKELSVLKGEYLEVLD-DSRQWWKVRNSRGQVGYVP 47

This group is composed of Eps8 and Eps8-like proteins including Eps8-like 1-3, among others. These proteins contain N-terminal Phosphotyrosine-binding (PTB), central SH3, and C-terminal effector domains. Eps8 binds either Abi1 (also called E3b1) or Rab5 GTPase activating protein RN-tre through its SH3 domain. With Abi1 and Sos1, it becomes part of a trimeric complex that is required to activate Rac. Together with RN-tre, it inhibits the internalization of EGFR. The SH3 domains of Eps8 and similar proteins recognize peptides containing a PxxDY motif, instead of the classical PxxP motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212698 cd11764, SH3_Eps8, Src Homology 3 domain of Epidermal growth factor receptor kinase substrate 8 and similar proteins

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIP 434
           V   YDF   +  +L   K + L V+  D   WW  +N  G+VG +P
Sbjct: 2   VRVLYDFTARNSKELSVLKGEYLEVLD-DSRQWWKVRNSRGQVGYVP 47

This group is composed of Eps8 and Eps8-like proteins including Eps8-like 1-3, among others. These proteins contain N-terminal Phosphotyrosine-binding (PTB), central SH3, and C-terminal effector domains. Eps8 binds either Abi1 (also called E3b1) or Rab5 GTPase activating protein RN-tre through its SH3 domain. With Abi1 and Sos1, it becomes part of a trimeric complex that is required to activate Rac. Together with RN-tre, it inhibits the internalization of EGFR. The SH3 domains of Eps8 and similar proteins recognize peptides containing a PxxDY motif, instead of the classical PxxP motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212844 cd11911, SH3_CIP4-like, Src Homology 3 domain of Cdc42-Interacting Protein 4

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWT-AQNISGEVGSIPVPYVQ 164
              A YDFDG     L  ++ +IL+V+ +D    WT  +  +G+ G +P  Y++
Sbjct: 1   TCTALYDFDGTSEGTLSMEEGEILLVLEEDGGDGWTRVRKNNGDEGYVPTSYIE 54

This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. It functions downstream of Cdc42 in PDGF-dependent actin reorganization and cell migration, and also regulates the activity of PDGFRbeta. It uses Src as a substrate in regulating the invasiveness of breast tumor cells. CIP4 may also play a role in the pathogenesis of Huntington's disease. Members of this subfamily typically contain an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. The SH3 domain of CIP4 associates with Gapex-5, a Rab31 GEF. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212844 cd11911, SH3_CIP4-like, Src Homology 3 domain of Cdc42-Interacting Protein 4

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWT-AQNISGEVGSIPVPYVQ 439
              A YDFDG     L  ++ +IL+V+ +D    WT  +  +G+ G +P  Y++
Sbjct: 1   TCTALYDFDGTSEGTLSMEEGEILLVLEEDGGDGWTRVRKNNGDEGYVPTSYIE 54

This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. It functions downstream of Cdc42 in PDGF-dependent actin reorganization and cell migration, and also regulates the activity of PDGFRbeta. It uses Src as a substrate in regulating the invasiveness of breast tumor cells. CIP4 may also play a role in the pathogenesis of Huntington's disease. Members of this subfamily typically contain an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. The SH3 domain of CIP4 associates with Gapex-5, a Rab31 GEF. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212800 cd11866, SH3_SKAP1-like, Src Homology 3 domain of Src Kinase-Associated Phosphoprotein 1 and similar proteins

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 3/51 (5%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSK--DEEHWWTAQNISGEVGSIPVPYV 163
             +D  GN+PD+L FK+ D++ ++SK  D   WW  + ++G+VG +P  Y+
Sbjct: 4   GLWDCSGNEPDELSFKRGDLIYIISKEYDSFGWWVGE-LNGKVGLVPKDYL 53

This subfamily is composed of SKAP1, SKAP2, and similar proteins. SKAP1 and SKAP2 are immune cell-specific adaptor proteins that play roles in T- and B-cell adhesion, respectively, and are thus important in the migration of T- and B-cells to sites of inflammation and for movement during T-cell conjugation with antigen-presenting cells. Both SKAP1 and SKAP2 bind to ADAP (adhesion and degranulation-promoting adaptor protein), among many other binding partners. They contain a pleckstrin homology (PH) domain, a C-terminal SH3 domain, and several tyrosine phosphorylation sites. The SH3 domain of SKAP1 is necessary for its ability to regulate T-cell conjugation with antigen-presenting cells and the formation of LFA-1 clusters. SKAP1 binds primarily to a proline-rich region of ADAP through its SH3 domain; its degradation is regulated by ADAP. A secondary interaction occurs via the ADAP SH3 domain and the RKxxYxxY motif in SKAP1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212800 cd11866, SH3_SKAP1-like, Src Homology 3 domain of Src Kinase-Associated Phosphoprotein 1 and similar proteins

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 3/51 (5%)

Query: 390 AKYDFDGNDPDDLPFKKNDILIVVSK--DEEHWWTAQNISGEVGSIPVPYV 438
             +D  GN+PD+L FK+ D++ ++SK  D   WW  + ++G+VG +P  Y+
Sbjct: 4   GLWDCSGNEPDELSFKRGDLIYIISKEYDSFGWWVGE-LNGKVGLVPKDYL 53

This subfamily is composed of SKAP1, SKAP2, and similar proteins. SKAP1 and SKAP2 are immune cell-specific adaptor proteins that play roles in T- and B-cell adhesion, respectively, and are thus important in the migration of T- and B-cells to sites of inflammation and for movement during T-cell conjugation with antigen-presenting cells. Both SKAP1 and SKAP2 bind to ADAP (adhesion and degranulation-promoting adaptor protein), among many other binding partners. They contain a pleckstrin homology (PH) domain, a C-terminal SH3 domain, and several tyrosine phosphorylation sites. The SH3 domain of SKAP1 is necessary for its ability to regulate T-cell conjugation with antigen-presenting cells and the formation of LFA-1 clusters. SKAP1 binds primarily to a proline-rich region of ADAP through its SH3 domain; its degradation is regulated by ADAP. A secondary interaction occurs via the ADAP SH3 domain and the RKxxYxxY motif in SKAP1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212760 cd11826, SH3_Abi, Src homology 3 domain of Abl Interactor proteins

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           KV+A YD+  +  D+L F++ DI+ V  K+++ W+    ++G  G  P  YV+
Sbjct: 1   KVVALYDYTADKDDELSFQEGDIIYVTKKNDDGWYEGV-LNGVTGLFPGNYVE 52

Abl interactor (Abi) proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. They localize to sites of actin polymerization in epithelial adherens junction and immune synapses, as well as to the leading edge of lamellipodia. Vertebrates contain two Abi proteins, Abi1 and Abi2. Abi1 displays a wide expression pattern while Abi2 is highly expressed in the eye and brain. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212760 cd11826, SH3_Abi, Src homology 3 domain of Abl Interactor proteins

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
           KV+A YD+  +  D+L F++ DI+ V  K+++ W+    ++G  G  P  YV+
Sbjct: 1   KVVALYDYTADKDDELSFQEGDIIYVTKKNDDGWYEGV-LNGVTGLFPGNYVE 52

Abl interactor (Abi) proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. They localize to sites of actin polymerization in epithelial adherens junction and immune synapses, as well as to the leading edge of lamellipodia. Vertebrates contain two Abi proteins, Abi1 and Abi2. Abi1 displays a wide expression pattern while Abi2 is highly expressed in the eye and brain. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212809 cd11876, SH3_MLK, Src Homology 3 domain of Mixed Lineage Kinases

 Score = 41.7 bits (98), Expect = 3e-05
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 6/55 (10%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKD-----EEHWWTAQNISGEVGSIPVPYVQ 164
           A +D+D    D+L  ++   + V+SKD     +E WWT + I  +VG  P  YV 
Sbjct: 4   ALFDYDARGEDELTLRRGQPVEVLSKDAAVSGDEGWWTGK-IGDKVGIFPSNYVA 57

MLKs are Serine/Threonine Kinases (STKs), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. Mammals have four MLKs (MLK1-4), mostly conserved in vertebrates, which contain an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212809 cd11876, SH3_MLK, Src Homology 3 domain of Mixed Lineage Kinases

 Score = 41.7 bits (98), Expect = 3e-05
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 6/55 (10%)

Query: 390 AKYDFDGNDPDDLPFKKNDILIVVSKD-----EEHWWTAQNISGEVGSIPVPYVQ 439
           A +D+D    D+L  ++   + V+SKD     +E WWT + I  +VG  P  YV 
Sbjct: 4   ALFDYDARGEDELTLRRGQPVEVLSKDAAVSGDEGWWTGK-IGDKVGIFPSNYVA 57

MLKs are Serine/Threonine Kinases (STKs), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. Mammals have four MLKs (MLK1-4), mostly conserved in vertebrates, which contain an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212812 cd11879, SH3_Bem1p_2, Second Src Homology 3 domain of Bud emergence protein 1 and similar domains

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI--SGEVGSIPVPYVQ 164
           I  YDF    PD+L  K  D +I+ +     W+ A+ I   G  G IPV +V+
Sbjct: 3   IVLYDFKAERPDELDAKAGDAIIICAHSNYEWFVAKPIGRLGGPGLIPVSFVE 55

Members of this subfamily bear similarity to Saccharomyces cerevisiae Bem1p, containing two Src Homology 3 (SH3) domains at the N-terminus, a central PX domain, and a C-terminal PB1 domain. Bem1p is a scaffolding protein that is critical for proper Cdc42p activation during bud formation in yeast. During budding and mating, Bem1p migrates to the plasma membrane where it can serve as an adaptor for Cdc42p and some other proteins. Bem1p also functions as an effector of the G1 cyclin Cln3p and the cyclin-dependent kinase Cdc28p in promoting vacuolar fusion. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 56

>gnl|CDD|212812 cd11879, SH3_Bem1p_2, Second Src Homology 3 domain of Bud emergence protein 1 and similar domains

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 389 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI--SGEVGSIPVPYVQ 439
           I  YDF    PD+L  K  D +I+ +     W+ A+ I   G  G IPV +V+
Sbjct: 3   IVLYDFKAERPDELDAKAGDAIIICAHSNYEWFVAKPIGRLGGPGLIPVSFVE 55

Members of this subfamily bear similarity to Saccharomyces cerevisiae Bem1p, containing two Src Homology 3 (SH3) domains at the N-terminus, a central PX domain, and a C-terminal PB1 domain. Bem1p is a scaffolding protein that is critical for proper Cdc42p activation during bud formation in yeast. During budding and mating, Bem1p migrates to the plasma membrane where it can serve as an adaptor for Cdc42p and some other proteins. Bem1p also functions as an effector of the G1 cyclin Cln3p and the cyclin-dependent kinase Cdc28p in promoting vacuolar fusion. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 56

>gnl|CDD|212755 cd11821, SH3_ASAP, Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing proteins

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 4/54 (7%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGE---VGSIPVPY 162
           +V A YD   ++ D+L F + +I++V  ++++ WW    I G+    G  PV +
Sbjct: 1   RVRALYDCQADNDDELTFSEGEIIVVTGEEDDEWWEGH-IEGDPSRRGVFPVSF 53

ASAPs are Arf GTPase activating proteins (GAPs) and they function in regulating cell growth, migration, and invasion. They contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3, but some ASAP3 proteins do not seem to harbor a C-terminal SH3 domain. ASAP1 and ASAP2 show GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but are able to mediate Arf6 signaling by binding stably to GTP-Arf6. ASAP3 is an Arf6-specific GAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212755 cd11821, SH3_ASAP, Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing proteins

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 4/54 (7%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGE---VGSIPVPY 437
           +V A YD   ++ D+L F + +I++V  ++++ WW    I G+    G  PV +
Sbjct: 1   RVRALYDCQADNDDELTFSEGEIIVVTGEEDDEWWEGH-IEGDPSRRGVFPVSF 53

ASAPs are Arf GTPase activating proteins (GAPs) and they function in regulating cell growth, migration, and invasion. They contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3, but some ASAP3 proteins do not seem to harbor a C-terminal SH3 domain. ASAP1 and ASAP2 show GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but are able to mediate Arf6 signaling by binding stably to GTP-Arf6. ASAP3 is an Arf6-specific GAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|198195 cd09942, SH2_nSH2_p85_like, N-terminal Src homology 2 (nSH2) domain found in p85

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 3/48 (6%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVK--ENNKV 58
          WY+G ++R+E    +  +  +G FLVRD++T+ G+Y L ++   NNK+
Sbjct: 9  WYWGDISREEVNEKM-RDTPDGTFLVRDASTMKGDYTLTLRKGGNNKL 55

Phosphoinositide 3-kinases (PI3Ks) are essential for cell growth, migration, and survival. p110, the catalytic subunit, is composed of an adaptor-binding domain, a Ras-binding domain, a C2 domain, a helical domain, and a kinase domain. The regulatory unit is called p85 and is composed of an SH3 domain, a RhoGap domain, a N-terminal SH2 (nSH2) domain, an internal SH2 (iSH2) domain, and C-terminal (cSH2) domain. There are 2 inhibitory interactions between p110alpha and p85 of P13K: (1) p85 nSH2 domain with the C2, helical, and kinase domains of p110alpha and (2) p85 iSH2 domain with C2 domain of p110alpha. There are 3 inhibitory interactions between p110beta and p85 of P13K: (1) p85 nSH2 domain with the C2, helical, and kinase domains of p110beta, (2) p85 iSH2 domain with C2 domain of p110alpha, and (3) p85 cSH2 domain with the kinase domain of p110alpha. It is interesting to note that p110beta is oncogenic as a wild type protein while p110alpha lacks this ability. One explanation is the idea that the regulation of p110beta by p85 is unique because of the addition of inhibitory contacts from the cSH2 domain and the loss of contacts in the iSH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 110

>gnl|CDD|198195 cd09942, SH2_nSH2_p85_like, N-terminal Src homology 2 (nSH2) domain found in p85

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 3/48 (6%)

Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVK--ENNKV 333
           WY+G ++R+E    +  +  +G FLVRD++T+ G+Y L ++   NNK+
Sbjct: 9   WYWGDISREEVNEKM-RDTPDGTFLVRDASTMKGDYTLTLRKGGNNKL 55

Phosphoinositide 3-kinases (PI3Ks) are essential for cell growth, migration, and survival. p110, the catalytic subunit, is composed of an adaptor-binding domain, a Ras-binding domain, a C2 domain, a helical domain, and a kinase domain. The regulatory unit is called p85 and is composed of an SH3 domain, a RhoGap domain, a N-terminal SH2 (nSH2) domain, an internal SH2 (iSH2) domain, and C-terminal (cSH2) domain. There are 2 inhibitory interactions between p110alpha and p85 of P13K: (1) p85 nSH2 domain with the C2, helical, and kinase domains of p110alpha and (2) p85 iSH2 domain with C2 domain of p110alpha. There are 3 inhibitory interactions between p110beta and p85 of P13K: (1) p85 nSH2 domain with the C2, helical, and kinase domains of p110beta, (2) p85 iSH2 domain with C2 domain of p110alpha, and (3) p85 cSH2 domain with the kinase domain of p110alpha. It is interesting to note that p110beta is oncogenic as a wild type protein while p110alpha lacks this ability. One explanation is the idea that the regulation of p110beta by p85 is unique because of the addition of inhibitory contacts from the cSH2 domain and the loss of contacts in the iSH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 110

>gnl|CDD|212740 cd11806, SH3_PRMT2, Src homology 3 domain of Protein arginine N-methyltransferase 2

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
            +A  DF   D   L F+  D L+V+ K    WW A   +G  G IP  ++ +
Sbjct: 2   YVAIADFVATDDSQLSFESGDKLLVLRKPSVDWWWA-EHNGCCGYIPASHLHQ 53

PRMT2, also called HRMT1L1, belongs to the arginine methyltransferase protein family. It functions as a coactivator to both estrogen receptor alpha (ER-alpha) and androgen receptor (AR), presumably through arginine methylation. The ER-alpha transcription factor is involved in cell proliferation, differentiation, morphogenesis, and apoptosis, and is also implicated in the development and progression of breast cancer. PRMT2 and its variants are upregulated in breast cancer cells and may be involved in modulating the ER-alpha signaling pathway during formation of breast cancer. PRMT2 also plays a role in regulating the function of E2F transcription factors, which are critical cell cycle regulators, by binding to the retinoblastoma gene product (RB). It contains an N-terminal SH3 domain and an AdoMet binding domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212740 cd11806, SH3_PRMT2, Src homology 3 domain of Protein arginine N-methyltransferase 2

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 440
            +A  DF   D   L F+  D L+V+ K    WW A   +G  G IP  ++ +
Sbjct: 2   YVAIADFVATDDSQLSFESGDKLLVLRKPSVDWWWA-EHNGCCGYIPASHLHQ 53

PRMT2, also called HRMT1L1, belongs to the arginine methyltransferase protein family. It functions as a coactivator to both estrogen receptor alpha (ER-alpha) and androgen receptor (AR), presumably through arginine methylation. The ER-alpha transcription factor is involved in cell proliferation, differentiation, morphogenesis, and apoptosis, and is also implicated in the development and progression of breast cancer. PRMT2 and its variants are upregulated in breast cancer cells and may be involved in modulating the ER-alpha signaling pathway during formation of breast cancer. PRMT2 also plays a role in regulating the function of E2F transcription factors, which are critical cell cycle regulators, by binding to the retinoblastoma gene product (RB). It contains an N-terminal SH3 domain and an AdoMet binding domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212773 cd11839, SH3_Intersectin_4, Fourth Src homology 3 domain (or SH3D) of Intersectin

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 8/55 (14%)

Query: 214 RVPNAYDKTA---LKLEIGDIIKVTKTNINGQWEGELNGK-----TGHFPFTHVE 260
           +V   +  TA   L L +G ++ V K + +G WEGEL  +      G FP  +V+
Sbjct: 3   QVIAPFTATAENQLSLAVGQLVLVRKKSPSGWWEGELQARGKKRQIGWFPANYVK 57

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fourth SH3 domain (or SH3D) of ITSN1 has been shown to bind SHIP2, Numb, CdGAP, and N-WASP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212773 cd11839, SH3_Intersectin_4, Fourth Src homology 3 domain (or SH3D) of Intersectin

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 8/55 (14%)

Query: 489 RVPNAYDKTA---LKLEIGDIIKVTKTNINGQWEGELNGK-----TGHFPFTHVE 535
           +V   +  TA   L L +G ++ V K + +G WEGEL  +      G FP  +V+
Sbjct: 3   QVIAPFTATAENQLSLAVGQLVLVRKKSPSGWWEGELQARGKKRQIGWFPANYVK 57

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fourth SH3 domain (or SH3D) of ITSN1 has been shown to bind SHIP2, Numb, CdGAP, and N-WASP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212743 cd11809, SH3_srGAP, Src homology 3 domain of Slit-Robo GTPase Activating Proteins

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
            A++D+ G    +L FKK D L +  +  + WW  Q ++G+ G +P  Y+
Sbjct: 3   TAQFDYTGRSERELSFKKGDSLTLYRQVSDDWWRGQ-LNGQDGLVPHKYI 51

Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs (srGAP1-3), all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. A fourth member has also been reported (srGAP4, also called ARHGAP4). srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212743 cd11809, SH3_srGAP, Src homology 3 domain of Slit-Robo GTPase Activating Proteins

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 389 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 438
            A++D+ G    +L FKK D L +  +  + WW  Q ++G+ G +P  Y+
Sbjct: 3   TAQFDYTGRSERELSFKKGDSLTLYRQVSDDWWRGQ-LNGQDGLVPHKYI 51

Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs (srGAP1-3), all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. A fourth member has also been reported (srGAP4, also called ARHGAP4). srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212721 cd11787, SH3_SH3RF_2, Second Src Homology 3 domain of SH3 domain containing ring finger proteins

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 4/52 (7%)

Query: 114 IAKYDFDGNDPDD---LPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPY 162
            A YDF+  D D+   L FKK D++ V+ + +E+W   + +  ++G  P+ +
Sbjct: 3   KALYDFEMKDEDEKDCLTFKKGDVITVIRRVDENWAEGR-LGDKIGIFPISF 53

This model represents the second SH3 domain of SH3RF1 (or POSH), SH3RF2 (or POSHER), SH3RF3 (POSH2), and similar domains. Members of this family are scaffold proteins that function as E3 ubiquitin-protein ligases. They all contain an N-terminal RING finger domain and multiple SH3 domains; SH3RF1 and SH3RF3 have four SH3 domains while SH3RF2 has three. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3RF2 acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212721 cd11787, SH3_SH3RF_2, Second Src Homology 3 domain of SH3 domain containing ring finger proteins

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 4/52 (7%)

Query: 389 IAKYDFDGNDPDD---LPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPY 437
            A YDF+  D D+   L FKK D++ V+ + +E+W   + +  ++G  P+ +
Sbjct: 3   KALYDFEMKDEDEKDCLTFKKGDVITVIRRVDENWAEGR-LGDKIGIFPISF 53

This model represents the second SH3 domain of SH3RF1 (or POSH), SH3RF2 (or POSHER), SH3RF3 (POSH2), and similar domains. Members of this family are scaffold proteins that function as E3 ubiquitin-protein ligases. They all contain an N-terminal RING finger domain and multiple SH3 domains; SH3RF1 and SH3RF3 have four SH3 domains while SH3RF2 has three. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3RF2 acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212937 cd12004, SH3_Lyn, Src homology 3 domain of Lyn Protein Tyrosine Kinase

 Score = 41.5 bits (97), Expect = 3e-05
 Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 6/56 (10%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH--WWTAQNISG-EVGSIPVPYVQK 165
           V+A Y +DG   DDL FKK + L V+   EEH  WW A++++  + G IP  YV K
Sbjct: 2   VVALYPYDGIHEDDLSFKKGEKLKVI---EEHGEWWKARSLTTKKEGFIPSNYVAK 54

Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212937 cd12004, SH3_Lyn, Src homology 3 domain of Lyn Protein Tyrosine Kinase

 Score = 41.5 bits (97), Expect = 3e-05
 Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 6/56 (10%)

Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH--WWTAQNISG-EVGSIPVPYVQK 440
           V+A Y +DG   DDL FKK + L V+   EEH  WW A++++  + G IP  YV K
Sbjct: 2   VVALYPYDGIHEDDLSFKKGEKLKVI---EEHGEWWKARSLTTKKEGFIPSNYVAK 54

Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212754 cd11820, SH3_STAM, Src homology 3 domain of Signal Transducing Adaptor Molecules

 Score = 41.3 bits (97), Expect = 3e-05
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           KV A YDF+  + ++L FK  +I+ V+   + +WW   N  GE G  P  +V  
Sbjct: 2   KVRALYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGSNHRGE-GLFPANFVTA 54

STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. There are two vertebrate STAMs, STAM1 and STAM2, which may be functionally redundant; vertebrate STAMs contain ITAM motifs. They are part of the endosomal sorting complex required for transport (ESCRT-0). STAM2 deficiency in mice did not cause any obvious abnormality, while STAM1 deficiency resulted in growth retardation. Loss of both STAM1 and STAM2 in mice proved lethal, indicating that STAMs are important for embryonic development. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212754 cd11820, SH3_STAM, Src homology 3 domain of Signal Transducing Adaptor Molecules

 Score = 41.3 bits (97), Expect = 3e-05
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 440
           KV A YDF+  + ++L FK  +I+ V+   + +WW   N  GE G  P  +V  
Sbjct: 2   KVRALYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGSNHRGE-GLFPANFVTA 54

STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. There are two vertebrate STAMs, STAM1 and STAM2, which may be functionally redundant; vertebrate STAMs contain ITAM motifs. They are part of the endosomal sorting complex required for transport (ESCRT-0). STAM2 deficiency in mice did not cause any obvious abnormality, while STAM1 deficiency resulted in growth retardation. Loss of both STAM1 and STAM2 in mice proved lethal, indicating that STAMs are important for embryonic development. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212860 cd11927, SH3_SH3RF1_1, First Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase

 Score = 41.1 bits (96), Expect = 3e-05
 Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           A Y+++G +P DL F K DI+I+  + +E+W+  + ++G  G  P  +VQ
Sbjct: 5   ALYNYEGKEPGDLKFSKGDIIILRRQVDENWYHGE-VNGIHGFFPTNFVQ 53

SH3RF1 is also called POSH (Plenty of SH3s) or SH3MD2 (SH3 multiple domains protein 2). It is a scaffold protein that acts as an E3 ubiquitin-protein ligase. It plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF1 also enhances the ubiquitination of ROMK1 potassium channel resulting in its increased endocytosis. It contains an N-terminal RING finger domain and four SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212860 cd11927, SH3_SH3RF1_1, First Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase

 Score = 41.1 bits (96), Expect = 3e-05
 Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 390 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
           A Y+++G +P DL F K DI+I+  + +E+W+  + ++G  G  P  +VQ
Sbjct: 5   ALYNYEGKEPGDLKFSKGDIIILRRQVDENWYHGE-VNGIHGFFPTNFVQ 53

SH3RF1 is also called POSH (Plenty of SH3s) or SH3MD2 (SH3 multiple domains protein 2). It is a scaffold protein that acts as an E3 ubiquitin-protein ligase. It plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF1 also enhances the ubiquitination of ROMK1 potassium channel resulting in its increased endocytosis. It contains an N-terminal RING finger domain and four SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|198263 cd10400, SH2_SAP1a, Src homology 2 (SH2) domain found in SLAM-associated protein (SAP) 1a

 Score = 42.5 bits (100), Expect = 3e-05
 Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 5/99 (5%)

Query: 14  YFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNT---E 70
           Y G ++R+  + +LL+   +G++L+RDS ++ G Y LCV     V  Y +++ T T    
Sbjct: 6   YHGKISRETGEKLLLAAGLDGSYLLRDSESVPGVYCLCVLYKGYVYTYRVSQ-TETGSWS 64

Query: 71  QQTCYKIGDKTFSDLPSLL-AFYKVHYLDTSPLIKPATK 108
            +T   +  + F  + +L+ AF K      +PL  P  K
Sbjct: 65  AETAPGVHKRLFRKVKNLISAFQKPDQGIVTPLQYPVEK 103

The X-linked lymphoproliferative syndrome (XLP) gene encodes SAP (also called SH2D1A/DSHP) a protein that consists of a 5 residue N-terminus, a single SH2 domain, and a short 25 residue C-terminal tail. XLP is characterized by an extreme sensitivity to Epstein-Barr virus. Both T and natural killer (NK) cell dysfunctions have been seen in XLP patients. SAP binds the cytoplasmic tail of Signaling lymphocytic activation molecule (SLAM), 2B4, Ly-9, and CD84. SAP is believed to function as a signaling inhibitor, by blocking or regulating binding of other signaling proteins. SAP and the SAP-like protein EAT-2 recognize the sequence motif TIpYXX[VI], which is found in the cytoplasmic domains of a restricted number of T, B, and NK cell surface receptors and are proposed to be natural inhibitors or regulators of the physiological role of a small family of receptors on the surface of these cells. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|198263 cd10400, SH2_SAP1a, Src homology 2 (SH2) domain found in SLAM-associated protein (SAP) 1a

 Score = 42.5 bits (100), Expect = 3e-05
 Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 5/99 (5%)

Query: 289 YFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNT---E 345
           Y G ++R+  + +LL+   +G++L+RDS ++ G Y LCV     V  Y +++ T T    
Sbjct: 6   YHGKISRETGEKLLLAAGLDGSYLLRDSESVPGVYCLCVLYKGYVYTYRVSQ-TETGSWS 64

Query: 346 QQTCYKIGDKTFSDLPSLL-AFYKVHYLDTSPLIKPATK 383
            +T   +  + F  + +L+ AF K      +PL  P  K
Sbjct: 65  AETAPGVHKRLFRKVKNLISAFQKPDQGIVTPLQYPVEK 103

The X-linked lymphoproliferative syndrome (XLP) gene encodes SAP (also called SH2D1A/DSHP) a protein that consists of a 5 residue N-terminus, a single SH2 domain, and a short 25 residue C-terminal tail. XLP is characterized by an extreme sensitivity to Epstein-Barr virus. Both T and natural killer (NK) cell dysfunctions have been seen in XLP patients. SAP binds the cytoplasmic tail of Signaling lymphocytic activation molecule (SLAM), 2B4, Ly-9, and CD84. SAP is believed to function as a signaling inhibitor, by blocking or regulating binding of other signaling proteins. SAP and the SAP-like protein EAT-2 recognize the sequence motif TIpYXX[VI], which is found in the cytoplasmic domains of a restricted number of T, B, and NK cell surface receptors and are proposed to be natural inhibitors or regulators of the physiological role of a small family of receptors on the surface of these cells. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|212690 cd00174, SH3, Src Homology 3 domain superfamily

 Score = 40.9 bits (97), Expect = 4e-05
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELN-GKTGHFPFTH 258
           L  + GDII V + + +G WEGELN G+ G FP  +
Sbjct: 16  LSFKKGDIITVLEKDDDGWWEGELNGGREGLFPANY 51

Src Homology 3 (SH3) domains are protein interaction domains that bind proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. Thus, they are referred to as proline-recognition domains (PRDs). SH3 domains are less selective and show more diverse specificity compared to other PRDs. They have been shown to bind peptide sequences that lack the PxxP motif; examples include the PxxDY motif of Eps8 and the RKxxYxxY sequence in SKAP55. SH3 domain containing proteins play versatile and diverse roles in the cell, including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies, among others. Many members of this superfamily are adaptor proteins that associate with a number of protein partners, facilitating complex formation and signal transduction. Length = 51

>gnl|CDD|212690 cd00174, SH3, Src Homology 3 domain superfamily

 Score = 40.9 bits (97), Expect = 4e-05
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 499 LKLEIGDIIKVTKTNINGQWEGELN-GKTGHFPFTH 533
           L  + GDII V + + +G WEGELN G+ G FP  +
Sbjct: 16  LSFKKGDIITVLEKDDDGWWEGELNGGREGLFPANY 51

Src Homology 3 (SH3) domains are protein interaction domains that bind proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. Thus, they are referred to as proline-recognition domains (PRDs). SH3 domains are less selective and show more diverse specificity compared to other PRDs. They have been shown to bind peptide sequences that lack the PxxP motif; examples include the PxxDY motif of Eps8 and the RKxxYxxY sequence in SKAP55. SH3 domain containing proteins play versatile and diverse roles in the cell, including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies, among others. Many members of this superfamily are adaptor proteins that associate with a number of protein partners, facilitating complex formation and signal transduction. Length = 51

>gnl|CDD|212761 cd11827, SH3_MyoIe_If_like, Src homology 3 domain of Myosins Ie, If, and similar proteins

 Score = 40.5 bits (95), Expect = 5e-05
 Identities = 19/43 (44%), Positives = 24/43 (55%)

Query: 218 AYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
           A D   L    GDII++ K + +G W G L GK G FP  +VE
Sbjct: 10  AQDTDELSFNEGDIIEILKEDPSGWWTGRLRGKEGLFPGNYVE 52

Myosins Ie (MyoIe) and If (MyoIf) are nonmuscle, unconventional, long tailed, class I myosins containing an N-terminal motor domain and a myosin tail with TH1, TH2, and SH3 domains. MyoIe interacts with the endocytic proteins, dynamin and synaptojanin-1, through its SH3 domain; it may play a role in clathrin-dependent endocytosis. In the kidney, MyoIe is critical for podocyte function and normal glomerular filtration. Mutations in MyoIe is associated with focal segmental glomerulosclerosis, a disease characterized by massive proteinuria and progression to end-stage kidney disease. MyoIf is predominantly expressed in the immune system; it plays a role in immune cell motility and innate immunity. Mutations in MyoIf may be associated with the loss of hearing. The MyoIf gene has also been found to be fused to the MLL (Mixed lineage leukemia) gene in infant acute myeloid leukemias (AML). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212761 cd11827, SH3_MyoIe_If_like, Src homology 3 domain of Myosins Ie, If, and similar proteins

 Score = 40.5 bits (95), Expect = 5e-05
 Identities = 19/43 (44%), Positives = 24/43 (55%)

Query: 493 AYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 535
           A D   L    GDII++ K + +G W G L GK G FP  +VE
Sbjct: 10  AQDTDELSFNEGDIIEILKEDPSGWWTGRLRGKEGLFPGNYVE 52

Myosins Ie (MyoIe) and If (MyoIf) are nonmuscle, unconventional, long tailed, class I myosins containing an N-terminal motor domain and a myosin tail with TH1, TH2, and SH3 domains. MyoIe interacts with the endocytic proteins, dynamin and synaptojanin-1, through its SH3 domain; it may play a role in clathrin-dependent endocytosis. In the kidney, MyoIe is critical for podocyte function and normal glomerular filtration. Mutations in MyoIe is associated with focal segmental glomerulosclerosis, a disease characterized by massive proteinuria and progression to end-stage kidney disease. MyoIf is predominantly expressed in the immune system; it plays a role in immune cell motility and innate immunity. Mutations in MyoIf may be associated with the loss of hearing. The MyoIf gene has also been found to be fused to the MLL (Mixed lineage leukemia) gene in infant acute myeloid leukemias (AML). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212941 cd12008, SH3_Src, Src homology 3 domain of Src Protein Tyrosine Kinase

 Score = 40.9 bits (95), Expect = 5e-05
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYV 163
           +A YD++     DL FKK + L +V+  E  WW A +++ G+ G IP  YV
Sbjct: 3   VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 53

Src (or c-Src) is a cytoplasmic (or non-receptor) PTK and is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells, and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212941 cd12008, SH3_Src, Src homology 3 domain of Src Protein Tyrosine Kinase

 Score = 40.9 bits (95), Expect = 5e-05
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 389 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYV 438
           +A YD++     DL FKK + L +V+  E  WW A +++ G+ G IP  YV
Sbjct: 3   VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 53

Src (or c-Src) is a cytoplasmic (or non-receptor) PTK and is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells, and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|198181 cd09927, SH2_Tensin_like, Src homology 2 domain found in Tensin-like proteins

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 21/41 (51%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVK 53
          WY   ++R +A A LL +K  G FLVRDS T  G Y L VK
Sbjct: 5  WYKPNISRDQAIA-LLKDKPPGTFLVRDSTTYKGAYGLAVK 44

SH2 domain found in Tensin-like proteins. The Tensins are a family of intracellular proteins that interact with receptor tyrosine kinases (RTKs), integrins, and actin. They are thought act as signaling bridges between the extracellular space and the cytoskeleton. There are four homologues: Tensin1, Tensin2 (TENC1, C1-TEN), Tensin3 and Tensin4 (cten), all of which contain a C-terminal tandem SH2-PTB domain pairing, as well as actin-binding regions that may localize them to focal adhesions. The isoforms of Tensin2 and Tensin3 contain N-terminal C1 domains, which are atypical and not expected to bind to phorbol esters. Tensins 1-3 contain a phosphatase (PTPase) and C2 domain pairing which resembles PTEN (phosphatase and tensin homologue deleted on chromosome 10) protein. PTEN is a lipid phosphatase that dephosphorylates phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3) to yield phosphatidylinositol 4,5-bisphosphate (PtdIns(4,5)P2). As PtdIns(3,4,5)P3 is the product of phosphatidylinositol 3-kinase (PI3K) activity, PTEN is therefore a key negative regulator of the PI3K pathway. Because of their PTEN-like domains, the Tensins may also possess phosphoinositide-binding or phosphatase capabilities. However, only Tensin2 and Tensin3 have the potential to be phosphatases since only their PTPase domains contain a cysteine residue that is essential for catalytic activity. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 116

>gnl|CDD|198181 cd09927, SH2_Tensin_like, Src homology 2 domain found in Tensin-like proteins

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 21/41 (51%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVK 328
           WY   ++R +A A LL +K  G FLVRDS T  G Y L VK
Sbjct: 5   WYKPNISRDQAIA-LLKDKPPGTFLVRDSTTYKGAYGLAVK 44

SH2 domain found in Tensin-like proteins. The Tensins are a family of intracellular proteins that interact with receptor tyrosine kinases (RTKs), integrins, and actin. They are thought act as signaling bridges between the extracellular space and the cytoskeleton. There are four homologues: Tensin1, Tensin2 (TENC1, C1-TEN), Tensin3 and Tensin4 (cten), all of which contain a C-terminal tandem SH2-PTB domain pairing, as well as actin-binding regions that may localize them to focal adhesions. The isoforms of Tensin2 and Tensin3 contain N-terminal C1 domains, which are atypical and not expected to bind to phorbol esters. Tensins 1-3 contain a phosphatase (PTPase) and C2 domain pairing which resembles PTEN (phosphatase and tensin homologue deleted on chromosome 10) protein. PTEN is a lipid phosphatase that dephosphorylates phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3) to yield phosphatidylinositol 4,5-bisphosphate (PtdIns(4,5)P2). As PtdIns(3,4,5)P3 is the product of phosphatidylinositol 3-kinase (PI3K) activity, PTEN is therefore a key negative regulator of the PI3K pathway. Because of their PTEN-like domains, the Tensins may also possess phosphoinositide-binding or phosphatase capabilities. However, only Tensin2 and Tensin3 have the potential to be phosphatases since only their PTPase domains contain a cysteine residue that is essential for catalytic activity. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 116

>gnl|CDD|212939 cd12006, SH3_Fyn_Yrk, Src homology 3 domain of Fyn and Yrk Protein Tyrosine Kinases

 Score = 40.8 bits (95), Expect = 5e-05
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
           +A YD++    DDL F K +   +++  E  WW A+++ +GE G IP  YV
Sbjct: 4   VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 54

Fyn and Yrk (Yes-related kinase) are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212939 cd12006, SH3_Fyn_Yrk, Src homology 3 domain of Fyn and Yrk Protein Tyrosine Kinases

 Score = 40.8 bits (95), Expect = 5e-05
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 389 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 438
           +A YD++    DDL F K +   +++  E  WW A+++ +GE G IP  YV
Sbjct: 4   VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 54

Fyn and Yrk (Yes-related kinase) are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|198254 cd10391, SH2_SHE, Src homology 2 domain found in SH2 domain-containing adapter protein E (SHE)

 Score = 42.3 bits (99), Expect = 5e-05
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 14/94 (14%)

Query: 12  SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN--- 68
            WY G ++R EA++ L   K+  ++LVR+S +    Y + +K +    H I+ +  +   
Sbjct: 2   PWYHGSISRAEAESRLQPCKE-ASYLVRNSESGNSKYSIALKTSQGCVHIIVAQTKDNKY 60

Query: 69  TEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPL 102
           T  QT        F  +P +     VHY     L
Sbjct: 61  TLNQTS-----AVFDSIPEV-----VHYYSNEKL 84

SHE is expressed in heart, lung, brain, and skeletal muscle. SHE contains two pTry protein binding domains, protein interaction domain (PID) and a SH2 domain, followed by a glycine-proline rich region, all of which are N-terminal to the phosphotyrosine binding (PTB) domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 98

>gnl|CDD|198254 cd10391, SH2_SHE, Src homology 2 domain found in SH2 domain-containing adapter protein E (SHE)

 Score = 42.3 bits (99), Expect = 5e-05
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 14/94 (14%)

Query: 287 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN--- 343
            WY G ++R EA++ L   K+  ++LVR+S +    Y + +K +    H I+ +  +   
Sbjct: 2   PWYHGSISRAEAESRLQPCKE-ASYLVRNSESGNSKYSIALKTSQGCVHIIVAQTKDNKY 60

Query: 344 TEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPL 377
           T  QT        F  +P +     VHY     L
Sbjct: 61  TLNQTS-----AVFDSIPEV-----VHYYSNEKL 84

SHE is expressed in heart, lung, brain, and skeletal muscle. SHE contains two pTry protein binding domains, protein interaction domain (PID) and a SH2 domain, followed by a glycine-proline rich region, all of which are N-terminal to the phosphotyrosine binding (PTB) domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 98

>gnl|CDD|198278 cd10415, SH2_Grb10, Src homology 2 (SH2) domain found in the growth factor receptor bound, subclass 10 (Grb10) proteins

 Score = 42.3 bits (99), Expect = 5e-05
 Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 4/91 (4%)

Query: 8  HDRNSWYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI 66
          H    W+ G ++R+E+  I+  +   +G FL+RDS +    +VL +  + K+ ++ I   
Sbjct: 2  HRTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPC 61

Query: 67 TNTEQQTCYKI--GDKTFSDLPSLLAFYKVH 95
           + + QT + +  G+  FSDL  L+ FY+++
Sbjct: 62 ED-DGQTFFSLDDGNTKFSDLIQLVDFYQLN 91

The Grb family binds to the epidermal growth factor receptor (EGFR, erbB1) via their SH2 domains. Grb10 is part of the Grb7 family of proteins which also includes Grb7, and Grb14. They are composed of an N-terminal Proline-rich domain, a Ras Associating-like (RA) domain, a Pleckstrin Homology (PH) domain, a phosphotyrosine interaction region (PIR, BPS) and a C-terminal SH2 domain. The SH2 domains of Grb7, Grb10 and Grb14 preferentially bind to a different RTK. Grb10 has been shown to interact with many different proteins, including the insulin and IGF1 receptors, platelet-derived growth factor (PDGF) receptor-beta, Ret, Kit, Raf1 and MEK1, and Nedd4. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 108

>gnl|CDD|198278 cd10415, SH2_Grb10, Src homology 2 (SH2) domain found in the growth factor receptor bound, subclass 10 (Grb10) proteins

 Score = 42.3 bits (99), Expect = 5e-05
 Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 4/91 (4%)

Query: 283 HDRNSWYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI 341
           H    W+ G ++R+E+  I+  +   +G FL+RDS +    +VL +  + K+ ++ I   
Sbjct: 2   HRTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPC 61

Query: 342 TNTEQQTCYKI--GDKTFSDLPSLLAFYKVH 370
            + + QT + +  G+  FSDL  L+ FY+++
Sbjct: 62  ED-DGQTFFSLDDGNTKFSDLIQLVDFYQLN 91

The Grb family binds to the epidermal growth factor receptor (EGFR, erbB1) via their SH2 domains. Grb10 is part of the Grb7 family of proteins which also includes Grb7, and Grb14. They are composed of an N-terminal Proline-rich domain, a Ras Associating-like (RA) domain, a Pleckstrin Homology (PH) domain, a phosphotyrosine interaction region (PIR, BPS) and a C-terminal SH2 domain. The SH2 domains of Grb7, Grb10 and Grb14 preferentially bind to a different RTK. Grb10 has been shown to interact with many different proteins, including the insulin and IGF1 receptors, platelet-derived growth factor (PDGF) receptor-beta, Ret, Kit, Raf1 and MEK1, and Nedd4. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 108

>gnl|CDD|212707 cd11773, SH3_Sla1p_1, First Src Homology 3 domain of the fungal endocytic adaptor protein Sla1p

 Score = 40.9 bits (96), Expect = 5e-05
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTA------QNISGEVGSIPVPY 162
           A YD++    D+L  +++DIL ++ K ++ WW         +    VG +P  Y
Sbjct: 4   ALYDYEPQTEDELTIQEDDILYLLEKSDDDWWKVKLKVNSSDDDEPVGLVPATY 57

Sla1p facilitates endocytosis by playing a role as an adaptor protein in coupling components of the actin cytoskeleton to the endocytic machinery. It interacts with Abp1p, Las17p and Pan1p, which are activator proteins of actin-related protein 2/3 (Arp2/3). Sla1p contains multiple domains including three SH3 domains, a SAM (sterile alpha motif) domain, and a Sla1 homology domain 1 (SHD1), which binds to the NPFXD motif that is found in many integral membrane proteins such as the Golgi-localized Arf-binding protein Lsb5p and the P4-ATPases, Drs2p and Dnf1p. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212707 cd11773, SH3_Sla1p_1, First Src Homology 3 domain of the fungal endocytic adaptor protein Sla1p

 Score = 40.9 bits (96), Expect = 5e-05
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 390 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTA------QNISGEVGSIPVPY 437
           A YD++    D+L  +++DIL ++ K ++ WW         +    VG +P  Y
Sbjct: 4   ALYDYEPQTEDELTIQEDDILYLLEKSDDDWWKVKLKVNSSDDDEPVGLVPATY 57

Sla1p facilitates endocytosis by playing a role as an adaptor protein in coupling components of the actin cytoskeleton to the endocytic machinery. It interacts with Abp1p, Las17p and Pan1p, which are activator proteins of actin-related protein 2/3 (Arp2/3). Sla1p contains multiple domains including three SH3 domains, a SAM (sterile alpha motif) domain, and a Sla1 homology domain 1 (SHD1), which binds to the NPFXD motif that is found in many integral membrane proteins such as the Golgi-localized Arf-binding protein Lsb5p and the P4-ATPases, Drs2p and Dnf1p. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212739 cd11805, SH3_GRB2_like_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 40.3 bits (95), Expect = 6e-05
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 229 GDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
           GDII V  ++    W+GEL G+ G FP  +V+
Sbjct: 21  GDIITVLDSSDPDWWKGELRGRVGIFPANYVQ 52

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The C-terminal SH3 domains (SH3c) of GRB2 and GRAP2 have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212739 cd11805, SH3_GRB2_like_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 40.3 bits (95), Expect = 6e-05
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 504 GDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 535
           GDII V  ++    W+GEL G+ G FP  +V+
Sbjct: 21  GDIITVLDSSDPDWWKGELRGRVGIFPANYVQ 52

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The C-terminal SH3 domains (SH3c) of GRB2 and GRAP2 have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212806 cd11873, SH3_CD2AP-like_1, First Src Homology 3 domain (SH3A) of CD2-associated protein and similar proteins

 Score = 40.7 bits (96), Expect = 6e-05
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           +VI ++D+D  +PD+L  K  DI+  V K EE WW    ++G+ G  P  +V+ 
Sbjct: 1   EVIVEFDYDAEEPDELTLKVGDIITNVKKMEEGWWEGT-LNGKRGMFPDNFVKV 53

This subfamily is composed of the first SH3 domain (SH3A) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3A of both proteins bind to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic domain of the cell adhesion protein CD2. CIN85 SH3A binds to internal proline-rich motifs within the proline-rich region; this intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. CIN85 SH3A has also been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212806 cd11873, SH3_CD2AP-like_1, First Src Homology 3 domain (SH3A) of CD2-associated protein and similar proteins

 Score = 40.7 bits (96), Expect = 6e-05
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 440
           +VI ++D+D  +PD+L  K  DI+  V K EE WW    ++G+ G  P  +V+ 
Sbjct: 1   EVIVEFDYDAEEPDELTLKVGDIITNVKKMEEGWWEGT-LNGKRGMFPDNFVKV 53

This subfamily is composed of the first SH3 domain (SH3A) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3A of both proteins bind to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic domain of the cell adhesion protein CD2. CIN85 SH3A binds to internal proline-rich motifs within the proline-rich region; this intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. CIN85 SH3A has also been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212993 cd12060, SH3_alphaPIX, Src Homology 3 domain of alpha-Pak Interactive eXchange factor

 Score = 40.8 bits (95), Expect = 6e-05
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 229 GDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
           GDII VT+    G WEG LNGKTG FP  +V 
Sbjct: 23  GDIIYVTRVEEGGWWEGTLNGKTGWFPSNYVR 54

Alpha-PIX, also called Rho guanine nucleotide exchange factor 6 (ARHGEF6) or Cool (Cloned out of Library)-2, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and is localized in dendritic spines where it regulates spine morphogenesis. It controls dendritic length and spine density in the hippocampus. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212993 cd12060, SH3_alphaPIX, Src Homology 3 domain of alpha-Pak Interactive eXchange factor

 Score = 40.8 bits (95), Expect = 6e-05
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 504 GDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 535
           GDII VT+    G WEG LNGKTG FP  +V 
Sbjct: 23  GDIIYVTRVEEGGWWEGTLNGKTGWFPSNYVR 54

Alpha-PIX, also called Rho guanine nucleotide exchange factor 6 (ARHGEF6) or Cool (Cloned out of Library)-2, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and is localized in dendritic spines where it regulates spine morphogenesis. It controls dendritic length and spine density in the hippocampus. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212932 cd11999, SH3_PACSIN_like, Src homology 3 domain of an unknown subfamily of proteins with similarity to Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins

 Score = 40.7 bits (95), Expect = 6e-05
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVS-KDEEHWWTAQNISGEVGSIPVPYVQ 164
           +V A YD+ G +PD+L FK  + L+ V  +DE+ W       G VG  P  YV+
Sbjct: 3   RVRAVYDYTGQEPDELSFKAGEELLKVEDEDEQGWCKGVTDGGAVGLYPANYVE 56

PACSINs, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212932 cd11999, SH3_PACSIN_like, Src homology 3 domain of an unknown subfamily of proteins with similarity to Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins

 Score = 40.7 bits (95), Expect = 6e-05
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVS-KDEEHWWTAQNISGEVGSIPVPYVQ 439
           +V A YD+ G +PD+L FK  + L+ V  +DE+ W       G VG  P  YV+
Sbjct: 3   RVRAVYDYTGQEPDELSFKAGEELLKVEDEDEQGWCKGVTDGGAVGLYPANYVE 56

PACSINs, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212763 cd11829, SH3_GAS7, Src homology 3 domain of Growth Arrest Specific protein 7

 Score = 40.6 bits (95), Expect = 6e-05
 Identities = 15/36 (41%), Positives = 22/36 (61%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHV 259
           L  E G++I+V +    G WEGE +G  G FP ++V
Sbjct: 17  LSFEAGELIRVLQAPDGGWWEGEKDGLRGWFPASYV 52

GAS7 is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212763 cd11829, SH3_GAS7, Src homology 3 domain of Growth Arrest Specific protein 7

 Score = 40.6 bits (95), Expect = 6e-05
 Identities = 15/36 (41%), Positives = 22/36 (61%)

Query: 499 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHV 534
           L  E G++I+V +    G WEGE +G  G FP ++V
Sbjct: 17  LSFEAGELIRVLQAPDGGWWEGEKDGLRGWFPASYV 52

GAS7 is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|198205 cd10342, SH2_SAP1, Src homology 2 (SH2) domain found in SLAM-associated protein (SAP)1

 Score = 41.9 bits (98), Expect = 6e-05
 Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
           Y G ++R+  + +LL+   +G++L+RDS ++ G Y LCV  +  +  Y +++     + 
Sbjct: 5  VYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQ----TET 60

Query: 73 TCYKI 77
            +  
Sbjct: 61 GSWSA 65

The X-linked lymphoproliferative syndrome (XLP) gene encodes SAP (also called SH2D1A/DSHP) a protein that consists of a 5 residue N-terminus, a single SH2 domain, and a short 25 residue C-terminal tail. XLP is characterized by an extreme sensitivity to Epstein-Barr virus. Both T and natural killer (NK) cell dysfunctions have been seen in XLP patients. SAP binds the cytoplasmic tail of Signaling lymphocytic activation molecule (SLAM), 2B4, Ly-9, and CD84. SAP is believed to function as a signaling inhibitor, by blocking or regulating binding of other signaling proteins. SAP and the SAP-like protein EAT-2 recognize the sequence motif TIpYXX[VI], which is found in the cytoplasmic domains of a restricted number of T, B, and NK cell surface receptors and are proposed to be natural inhibitors or regulators of the physiological role of a small family of receptors on the surface of these cells. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|198205 cd10342, SH2_SAP1, Src homology 2 (SH2) domain found in SLAM-associated protein (SAP)1

 Score = 41.9 bits (98), Expect = 6e-05
 Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 347
            Y G ++R+  + +LL+   +G++L+RDS ++ G Y LCV  +  +  Y +++     + 
Sbjct: 5   VYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQ----TET 60

Query: 348 TCYKI 352
             +  
Sbjct: 61  GSWSA 65

The X-linked lymphoproliferative syndrome (XLP) gene encodes SAP (also called SH2D1A/DSHP) a protein that consists of a 5 residue N-terminus, a single SH2 domain, and a short 25 residue C-terminal tail. XLP is characterized by an extreme sensitivity to Epstein-Barr virus. Both T and natural killer (NK) cell dysfunctions have been seen in XLP patients. SAP binds the cytoplasmic tail of Signaling lymphocytic activation molecule (SLAM), 2B4, Ly-9, and CD84. SAP is believed to function as a signaling inhibitor, by blocking or regulating binding of other signaling proteins. SAP and the SAP-like protein EAT-2 recognize the sequence motif TIpYXX[VI], which is found in the cytoplasmic domains of a restricted number of T, B, and NK cell surface receptors and are proposed to be natural inhibitors or regulators of the physiological role of a small family of receptors on the surface of these cells. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|212700 cd11766, SH3_Nck_2, Second Src Homology 3 domain of Nck adaptor proteins

 Score = 40.3 bits (95), Expect = 6e-05
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
             + K++++    D+L  +K D ++V+ K  + WW  +   G+VG  P  YV +
Sbjct: 1   PAVVKFNYEAQREDELSLRKGDRVLVLEKSSDGWWRGECN-GQVGWFPSNYVTE 53

Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212700 cd11766, SH3_Nck_2, Second Src Homology 3 domain of Nck adaptor proteins

 Score = 40.3 bits (95), Expect = 6e-05
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 440
             + K++++    D+L  +K D ++V+ K  + WW  +   G+VG  P  YV +
Sbjct: 1   PAVVKFNYEAQREDELSLRKGDRVLVLEKSSDGWWRGECN-GQVGWFPSNYVTE 53

Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212803 cd11870, SH3_p67phox-like_C, C-terminal Src Homology 3 domain of the p67phox subunit of NADPH oxidase and similar proteins

 Score = 40.2 bits (94), Expect = 7e-05
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           +V+A + ++   P+DL F++ D + V+S+  E W    +  G VG  P  +V 
Sbjct: 1   QVVALHRYEAQGPEDLGFREGDTIDVLSEVNEAWLEGHS-DGRVGIFPKCFVV 52

This subfamily is composed of p67phox, NADPH oxidase activator 1 (Noxa1), and similar proteins. p67phox, also called Neutrophil cytosol factor 2 (NCF-2), and Noxa1 are homologs and are the cytosolic subunits of the phagocytic (Nox2) and nonphagocytic (Nox1) NADPH oxidase complexes, respectively. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox and Noxa1 play regulatory roles. p67phox contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. Noxa1 has a similar domain architecture except it is lacking the N-terminal SH3 domain. The TPR domain of both binds activated GTP-bound Rac, while the C-terminal SH3 domain of p67phox and Noxa1 binds the polyproline motif found at the C-terminus of p47phox and Noxo1, respectively. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212803 cd11870, SH3_p67phox-like_C, C-terminal Src Homology 3 domain of the p67phox subunit of NADPH oxidase and similar proteins

 Score = 40.2 bits (94), Expect = 7e-05
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
           +V+A + ++   P+DL F++ D + V+S+  E W    +  G VG  P  +V 
Sbjct: 1   QVVALHRYEAQGPEDLGFREGDTIDVLSEVNEAWLEGHS-DGRVGIFPKCFVV 52

This subfamily is composed of p67phox, NADPH oxidase activator 1 (Noxa1), and similar proteins. p67phox, also called Neutrophil cytosol factor 2 (NCF-2), and Noxa1 are homologs and are the cytosolic subunits of the phagocytic (Nox2) and nonphagocytic (Nox1) NADPH oxidase complexes, respectively. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox and Noxa1 play regulatory roles. p67phox contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. Noxa1 has a similar domain architecture except it is lacking the N-terminal SH3 domain. The TPR domain of both binds activated GTP-bound Rac, while the C-terminal SH3 domain of p67phox and Noxa1 binds the polyproline motif found at the C-terminus of p47phox and Noxo1, respectively. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|198265 cd10402, SH2_C-SH2_Zap70, C-terminal Src homology 2 (SH2) domain found in Zeta-chain-associated protein kinase 70 (ZAP-70)

 Score = 41.8 bits (98), Expect = 7e-05
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 8  HDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
          H+R  WY G + R EA+  L S  + +G FL+R+     G Y L +     V HY I++
Sbjct: 7  HERMPWYHGSIARDEAERRLYSGAQPDGKFLLRERKE-SGTYALSLVYGKTVYHYRIDQ 64

ZAP-70 and Syk comprise a family of hematopoietic cell specific protein tyrosine kinases (PTKs) that are required for antigen and antibody receptor function. ZAP-70 is expressed in T and natural killer (NK) cells and Syk is expressed in B cells, mast cells, polymorphonuclear leukocytes, platelets, macrophages, and immature T cells. They are required for the proper development of T and B cells, immune receptors, and activating NK cells. They consist of two N-terminal Src homology 2 (SH2) domains and a C-terminal kinase domain separated from the SH2 domains by a linker or hinge region. Phosphorylation of both tyrosine residues within the Immunoreceptor Tyrosine-based Activation Motifs (ITAM; consensus sequence Yxx[LI]x(7,8)Yxx[LI]) by the Src-family PTKs is required for efficient interaction of ZAP-70 and Syk with the receptor subunits and for receptor function. ZAP-70 forms two phosphotyrosine binding pockets, one of which is shared by both SH2 domains. In Syk the two SH2 domains do not form such a phosphotyrosine-binding site. The SH2 domains here are believed to function independently. In addition, the two SH2 domains of Syk display flexibility in their relative orientation, allowing Syk to accommodate a greater variety of spacing sequences between the ITAM phosphotyrosines and singly phosphorylated non-classical ITAM ligands. This model contains the C-terminus SH2 domains of Zap70. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 105

>gnl|CDD|198265 cd10402, SH2_C-SH2_Zap70, C-terminal Src homology 2 (SH2) domain found in Zeta-chain-associated protein kinase 70 (ZAP-70)

 Score = 41.8 bits (98), Expect = 7e-05
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 283 HDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 340
           H+R  WY G + R EA+  L S  + +G FL+R+     G Y L +     V HY I++
Sbjct: 7   HERMPWYHGSIARDEAERRLYSGAQPDGKFLLRERKE-SGTYALSLVYGKTVYHYRIDQ 64

ZAP-70 and Syk comprise a family of hematopoietic cell specific protein tyrosine kinases (PTKs) that are required for antigen and antibody receptor function. ZAP-70 is expressed in T and natural killer (NK) cells and Syk is expressed in B cells, mast cells, polymorphonuclear leukocytes, platelets, macrophages, and immature T cells. They are required for the proper development of T and B cells, immune receptors, and activating NK cells. They consist of two N-terminal Src homology 2 (SH2) domains and a C-terminal kinase domain separated from the SH2 domains by a linker or hinge region. Phosphorylation of both tyrosine residues within the Immunoreceptor Tyrosine-based Activation Motifs (ITAM; consensus sequence Yxx[LI]x(7,8)Yxx[LI]) by the Src-family PTKs is required for efficient interaction of ZAP-70 and Syk with the receptor subunits and for receptor function. ZAP-70 forms two phosphotyrosine binding pockets, one of which is shared by both SH2 domains. In Syk the two SH2 domains do not form such a phosphotyrosine-binding site. The SH2 domains here are believed to function independently. In addition, the two SH2 domains of Syk display flexibility in their relative orientation, allowing Syk to accommodate a greater variety of spacing sequences between the ITAM phosphotyrosines and singly phosphorylated non-classical ITAM ligands. This model contains the C-terminus SH2 domains of Zap70. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 105

>gnl|CDD|212992 cd12059, SH3_MLK1-3, Src Homology 3 domain of Mixed Lineage Kinases 1, 2, and 3

 Score = 40.5 bits (95), Expect = 7e-05
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 6/54 (11%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKD-----EEHWWTAQNISGEVGSIPVPYV 163
           A +D++ +  D+L  ++ D + V+SKD     +E WWT + I+  VG  P  YV
Sbjct: 4   AVFDYEASAEDELTLRRGDRVEVLSKDSAVSGDEGWWTGK-INDRVGIFPSNYV 56

MLKs 1, 2, and 3 are Serine/Threonine Kinases (STKs), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. Little is known about the specific function of MLK1, also called MAP3K9. It is capable of activating the c-Jun N-terminal kinase pathway. Mice lacking both MLK1 and MLK2 are viable, fertile, and have normal life spans. MLK2, also called MAP3K10, is abundant in brain, skeletal muscle, and testis. It functions upstream of the MAPK, c-Jun N-terminal kinase. It binds hippocalcin, a calcium-sensor protein that protects neurons against calcium-induced cell death. Both MLK2 and hippocalcin may be associated with the pathogenesis of Parkinson's disease. MLK3, also called MAP3K11, is highly expressed in breast cancer cells and its signaling through c-Jun N-terminal kinase has been implicated in the migration, invasion, and malignancy of cancer cells. It also functions as a negative regulator of Inhibitor of Nuclear Factor-KappaB Kinase (IKK) and thus, impacts inflammation and immunity. MLKs contain an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212992 cd12059, SH3_MLK1-3, Src Homology 3 domain of Mixed Lineage Kinases 1, 2, and 3

 Score = 40.5 bits (95), Expect = 7e-05
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 6/54 (11%)

Query: 390 AKYDFDGNDPDDLPFKKNDILIVVSKD-----EEHWWTAQNISGEVGSIPVPYV 438
           A +D++ +  D+L  ++ D + V+SKD     +E WWT + I+  VG  P  YV
Sbjct: 4   AVFDYEASAEDELTLRRGDRVEVLSKDSAVSGDEGWWTGK-INDRVGIFPSNYV 56

MLKs 1, 2, and 3 are Serine/Threonine Kinases (STKs), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. Little is known about the specific function of MLK1, also called MAP3K9. It is capable of activating the c-Jun N-terminal kinase pathway. Mice lacking both MLK1 and MLK2 are viable, fertile, and have normal life spans. MLK2, also called MAP3K10, is abundant in brain, skeletal muscle, and testis. It functions upstream of the MAPK, c-Jun N-terminal kinase. It binds hippocalcin, a calcium-sensor protein that protects neurons against calcium-induced cell death. Both MLK2 and hippocalcin may be associated with the pathogenesis of Parkinson's disease. MLK3, also called MAP3K11, is highly expressed in breast cancer cells and its signaling through c-Jun N-terminal kinase has been implicated in the migration, invasion, and malignancy of cancer cells. It also functions as a negative regulator of Inhibitor of Nuclear Factor-KappaB Kinase (IKK) and thus, impacts inflammation and immunity. MLKs contain an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212808 cd11875, SH3_CD2AP-like_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein and similar proteins

 Score = 40.4 bits (95), Expect = 7e-05
 Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 2/39 (5%)

Query: 224 LKLEIGDIIKV-TKTNIN-GQWEGELNGKTGHFPFTHVE 260
           L L  GDI+ + +K   + G W+GELNGK G FP   VE
Sbjct: 16  LTLREGDIVTILSKDCEDKGWWKGELNGKRGVFPDNFVE 54

This subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212808 cd11875, SH3_CD2AP-like_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein and similar proteins

 Score = 40.4 bits (95), Expect = 7e-05
 Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 2/39 (5%)

Query: 499 LKLEIGDIIKV-TKTNIN-GQWEGELNGKTGHFPFTHVE 535
           L L  GDI+ + +K   + G W+GELNGK G FP   VE
Sbjct: 16  LTLREGDIVTILSKDCEDKGWWKGELNGKRGVFPDNFVE 54

This subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212994 cd12061, SH3_betaPIX, Src Homology 3 domain of beta-Pak Interactive eXchange factor

 Score = 40.4 bits (94), Expect = 7e-05
 Identities = 17/36 (47%), Positives = 21/36 (58%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHV 259
           L    GD+I VT+    G WEG  NG+TG FP  +V
Sbjct: 16  LSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 51

Beta-PIX, also called Rho guanine nucleotide exchange factor 7 (ARHGEF7) or Cool (Cloned out of Library)-1, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and plays important roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212994 cd12061, SH3_betaPIX, Src Homology 3 domain of beta-Pak Interactive eXchange factor

 Score = 40.4 bits (94), Expect = 7e-05
 Identities = 17/36 (47%), Positives = 21/36 (58%)

Query: 499 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHV 534
           L    GD+I VT+    G WEG  NG+TG FP  +V
Sbjct: 16  LSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 51

Beta-PIX, also called Rho guanine nucleotide exchange factor 7 (ARHGEF7) or Cool (Cloned out of Library)-1, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and plays important roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212938 cd12005, SH3_Lck, Src homology 3 domain of Lck Protein Tyrosine Kinase

 Score = 40.2 bits (94), Expect = 7e-05
 Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQK 165
           V+A Y ++ +   DL F+K + L ++ +  E WW AQ++ +G+ G IP  +V K
Sbjct: 2   VVALYSYEPSHDGDLGFEKGEKLRILEQSGE-WWKAQSLTTGQEGFIPFNFVAK 54

Lck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. Lck is expressed in T-cells and natural killer cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212938 cd12005, SH3_Lck, Src homology 3 domain of Lck Protein Tyrosine Kinase

 Score = 40.2 bits (94), Expect = 7e-05
 Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQK 440
           V+A Y ++ +   DL F+K + L ++ +  E WW AQ++ +G+ G IP  +V K
Sbjct: 2   VVALYSYEPSHDGDLGFEKGEKLRILEQSGE-WWKAQSLTTGQEGFIPFNFVAK 54

Lck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. Lck is expressed in T-cells and natural killer cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212853 cd11920, SH3_Sorbs2_1, First Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 40.4 bits (94), Expect = 7e-05
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           A YDF      +L FKK D + ++ K +++W+  ++  G VG  P+ YV+K
Sbjct: 5   AVYDFKAQTSKELSFKKGDTVYILRKIDQNWYEGEH-HGRVGIFPISYVEK 54

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212853 cd11920, SH3_Sorbs2_1, First Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 40.4 bits (94), Expect = 7e-05
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 390 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 440
           A YDF      +L FKK D + ++ K +++W+  ++  G VG  P+ YV+K
Sbjct: 5   AVYDFKAQTSKELSFKKGDTVYILRKIDQNWYEGEH-HGRVGIFPISYVEK 54

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212742 cd11808, SH3_Alpha_Spectrin, Src homology 3 domain of Alpha Spectrin

 Score = 40.2 bits (94), Expect = 7e-05
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
            V+A YD+    P ++  KK DIL +++   + WW  +  +   G +P  YV+K
Sbjct: 1   CVVALYDYQEKSPREVSMKKGDILTLLNSSNKDWWKVEV-NDRQGFVPAAYVKK 53

Spectrin is a major structural component of the red blood cell membrane skeleton and is important in erythropoiesis and membrane biogenesis. It is a flexible, rope-like molecule composed of two subunits, alpha and beta, which consist of many spectrin-type repeats. Alpha and beta spectrin associate to form heterodimers and tetramers; spectrin tetramer formation is critical for red cell shape and deformability. Defects in alpha spectrin have been associated with inherited hemolytic anemias including hereditary spherocytosis (HSp), hereditary elliptocytosis (HE), and hereditary pyropoikilocytosis (HPP). Alpha spectrin contains a middle SH3 domain and a C-terminal EF-hand binding motif in addition to multiple spectrin repeats. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212742 cd11808, SH3_Alpha_Spectrin, Src homology 3 domain of Alpha Spectrin

 Score = 40.2 bits (94), Expect = 7e-05
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 440
            V+A YD+    P ++  KK DIL +++   + WW  +  +   G +P  YV+K
Sbjct: 1   CVVALYDYQEKSPREVSMKKGDILTLLNSSNKDWWKVEV-NDRQGFVPAAYVKK 53

Spectrin is a major structural component of the red blood cell membrane skeleton and is important in erythropoiesis and membrane biogenesis. It is a flexible, rope-like molecule composed of two subunits, alpha and beta, which consist of many spectrin-type repeats. Alpha and beta spectrin associate to form heterodimers and tetramers; spectrin tetramer formation is critical for red cell shape and deformability. Defects in alpha spectrin have been associated with inherited hemolytic anemias including hereditary spherocytosis (HSp), hereditary elliptocytosis (HE), and hereditary pyropoikilocytosis (HPP). Alpha spectrin contains a middle SH3 domain and a C-terminal EF-hand binding motif in addition to multiple spectrin repeats. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212795 cd11861, SH3_DLG-like, Src Homology 3 domain of Disks large homolog proteins

 Score = 40.4 bits (95), Expect = 8e-05
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 10/57 (17%)

Query: 113 VIAKYDFDGNDPDDLP-----FKKNDILIVVSKDEEHWWTAQNIS-----GEVGSIP 159
           V A +D+D +    LP     FK  DIL V +  ++ WW A+ ++      EVG IP
Sbjct: 2   VRALFDYDPSRDSGLPSQGLSFKFGDILHVTNASDDEWWQARRVTPNGEEEEVGVIP 58

The DLG-like proteins are scaffolding proteins that cluster at synapses and are also called PSD (postsynaptic density)-95 proteins or SAPs (synapse-associated proteins). They play important roles in synaptic development and plasticity, cell polarity, migration and proliferation. They are members of the MAGUK (membrane-associated guanylate kinase) protein family, which is characterized by the presence of a core of three domains: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. DLG-like proteins contain three PDZ domains and varying N-terminal regions. All DLG proteins exist as alternatively-spliced isoforms. Vertebrates contain four DLG proteins from different genes, called DLG1-4. DLG4 and DLG2 are found predominantly at postsynaptic sites and they mediate surface ion channel and receptor clustering. DLG3 is found axons and some presynaptic terminals. DLG1 interacts with AMPA-type glutamate receptors and is critical in their maturation and delivery to synapses. The SH3 domain of DLG4 binds and clusters the kainate subgroup of glutamate receptors via two proline-rich sequences in their C-terminal tail. It also binds AKAP79/150 (A-kinase anchoring protein). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212795 cd11861, SH3_DLG-like, Src Homology 3 domain of Disks large homolog proteins

 Score = 40.4 bits (95), Expect = 8e-05
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 10/57 (17%)

Query: 388 VIAKYDFDGNDPDDLP-----FKKNDILIVVSKDEEHWWTAQNIS-----GEVGSIP 434
           V A +D+D +    LP     FK  DIL V +  ++ WW A+ ++      EVG IP
Sbjct: 2   VRALFDYDPSRDSGLPSQGLSFKFGDILHVTNASDDEWWQARRVTPNGEEEEVGVIP 58

The DLG-like proteins are scaffolding proteins that cluster at synapses and are also called PSD (postsynaptic density)-95 proteins or SAPs (synapse-associated proteins). They play important roles in synaptic development and plasticity, cell polarity, migration and proliferation. They are members of the MAGUK (membrane-associated guanylate kinase) protein family, which is characterized by the presence of a core of three domains: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. DLG-like proteins contain three PDZ domains and varying N-terminal regions. All DLG proteins exist as alternatively-spliced isoforms. Vertebrates contain four DLG proteins from different genes, called DLG1-4. DLG4 and DLG2 are found predominantly at postsynaptic sites and they mediate surface ion channel and receptor clustering. DLG3 is found axons and some presynaptic terminals. DLG1 interacts with AMPA-type glutamate receptors and is critical in their maturation and delivery to synapses. The SH3 domain of DLG4 binds and clusters the kainate subgroup of glutamate receptors via two proline-rich sequences in their C-terminal tail. It also binds AKAP79/150 (A-kinase anchoring protein). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|198259 cd10396, SH2_Tec_Itk, Src homology 2 (SH2) domain found in Tec protein, IL2-inducible T-cell kinase (Itk)

 Score = 41.7 bits (98), Expect = 8e-05
 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 8/91 (8%)

Query: 9  DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCV------KENNKVSHYI 62
          D+  WY   + R +A+ +L  E   G F+VRDS+   G Y + +      + N  + HY 
Sbjct: 4  DQYEWYNKNINRSKAEKLLRDEGKEGGFMVRDSSQP-GLYTVSLYTKAGGEGNPCIRHYH 62

Query: 63 INKITNTEQQTCYKIGDKTFSDLPSLLAFYK 93
          I K TN   +  Y      F+ +P L+ ++K
Sbjct: 63 I-KETNDSPKKYYLAEKHVFNSIPELIEYHK 92

A member of the Tec protein tyrosine kinase Itk is expressed thymus, spleen, lymph node, T lymphocytes, NK and mast cells. It plays a role in T-cell proliferation and differentiation, analogous to Tec family kinases Txk. Itk has been shown to interact with Fyn, Wiskott-Aldrich syndrome protein, KHDRBS1, PLCG1, Lymphocyte cytosolic protein 2, Linker of activated T cells, Karyopherin alpha 2, Grb2, and Peptidylprolyl isomerase A. Most of the Tec family members have a PH domain (Txk and the short (type 1) splice variant of Drosophila Btk29A are exceptions), a Tec homology (TH) domain, a SH3 domain, a SH2 domain, and a protein kinase catalytic domain. The TH domain consists of a Zn2+-binding Btk motif and a proline-rich region. The Btk motif is found in Tec kinases, Ras GAP, and IGBP. It is crucial for the function of Tec PH domains and it's lack of presence in Txk is not surprising since it lacks a PH domain. The type 1 splice form of the Drosophila homolog also lacks both the PH domain and the Btk motif. The proline-rich regions are highly conserved for the most part with the exception of Bmx whose residues surrounding the PXXP motif are not conserved (TH-like) and Btk29A which is entirely unique with large numbers of glycine residues (TH-extended). Tec family members all lack a C-terminal tyrosine having an autoinhibitory function in its phosphorylated state. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 108

>gnl|CDD|198259 cd10396, SH2_Tec_Itk, Src homology 2 (SH2) domain found in Tec protein, IL2-inducible T-cell kinase (Itk)

 Score = 41.7 bits (98), Expect = 8e-05
 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 8/91 (8%)

Query: 284 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCV------KENNKVSHYI 337
           D+  WY   + R +A+ +L  E   G F+VRDS+   G Y + +      + N  + HY 
Sbjct: 4   DQYEWYNKNINRSKAEKLLRDEGKEGGFMVRDSSQP-GLYTVSLYTKAGGEGNPCIRHYH 62

Query: 338 INKITNTEQQTCYKIGDKTFSDLPSLLAFYK 368
           I K TN   +  Y      F+ +P L+ ++K
Sbjct: 63  I-KETNDSPKKYYLAEKHVFNSIPELIEYHK 92

A member of the Tec protein tyrosine kinase Itk is expressed thymus, spleen, lymph node, T lymphocytes, NK and mast cells. It plays a role in T-cell proliferation and differentiation, analogous to Tec family kinases Txk. Itk has been shown to interact with Fyn, Wiskott-Aldrich syndrome protein, KHDRBS1, PLCG1, Lymphocyte cytosolic protein 2, Linker of activated T cells, Karyopherin alpha 2, Grb2, and Peptidylprolyl isomerase A. Most of the Tec family members have a PH domain (Txk and the short (type 1) splice variant of Drosophila Btk29A are exceptions), a Tec homology (TH) domain, a SH3 domain, a SH2 domain, and a protein kinase catalytic domain. The TH domain consists of a Zn2+-binding Btk motif and a proline-rich region. The Btk motif is found in Tec kinases, Ras GAP, and IGBP. It is crucial for the function of Tec PH domains and it's lack of presence in Txk is not surprising since it lacks a PH domain. The type 1 splice form of the Drosophila homolog also lacks both the PH domain and the Btk motif. The proline-rich regions are highly conserved for the most part with the exception of Bmx whose residues surrounding the PXXP motif are not conserved (TH-like) and Btk29A which is entirely unique with large numbers of glycine residues (TH-extended). Tec family members all lack a C-terminal tyrosine having an autoinhibitory function in its phosphorylated state. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 108

>gnl|CDD|212881 cd11948, SH3_GRAP_N, N-terminal Src homology 3 domain of GRB2-related adaptor protein

 Score = 40.2 bits (94), Expect = 8e-05
 Identities = 19/52 (36%), Positives = 35/52 (67%), Gaps = 2/52 (3%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVS-KDEEHWWTAQNISGEVGSIPVPYVQ 164
           +A Y F   + D+LPF+K DIL +++ +D+++W+ A+ + G  G IP  Y++
Sbjct: 3   VALYSFQATESDELPFQKGDILKILNMEDDQNWYKAE-LQGREGYIPKNYIK 53

GRAP is a GRB-2 like adaptor protein that is highly expressed in lymphoid tissues. It acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. It has been identified as a regulator of TGFbeta signaling in diabetic kidney tubules and may have a role in the pathogenesis of the disease. GRAP contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The N-terminal SH3 domain of the related protein GRB2 binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212881 cd11948, SH3_GRAP_N, N-terminal Src homology 3 domain of GRB2-related adaptor protein

 Score = 40.2 bits (94), Expect = 8e-05
 Identities = 19/52 (36%), Positives = 35/52 (67%), Gaps = 2/52 (3%)

Query: 389 IAKYDFDGNDPDDLPFKKNDILIVVS-KDEEHWWTAQNISGEVGSIPVPYVQ 439
           +A Y F   + D+LPF+K DIL +++ +D+++W+ A+ + G  G IP  Y++
Sbjct: 3   VALYSFQATESDELPFQKGDILKILNMEDDQNWYKAE-LQGREGYIPKNYIK 53

GRAP is a GRB-2 like adaptor protein that is highly expressed in lymphoid tissues. It acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. It has been identified as a regulator of TGFbeta signaling in diabetic kidney tubules and may have a role in the pathogenesis of the disease. GRAP contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The N-terminal SH3 domain of the related protein GRB2 binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212880 cd11947, SH3_GRAP2_N, N-terminal Src homology 3 domain of GRB2-related adaptor protein 2

 Score = 40.2 bits (94), Expect = 9e-05
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
            K+DF  +  D+L FKK D+L ++S D+   W    ++GE G +P  +V
Sbjct: 4   GKFDFTASGEDELSFKKGDVLKILSSDDI--WFKAELNGEEGYVPKNFV 50

GRAP2 is also called GADS (GRB2-related adapter downstream of Shc), GrpL, GRB2L, Mona, or GRID (Grb2-related protein with insert domain). It is expressed specifically in the hematopoietic system. It plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. It also have roles in antigen-receptor and tyrosine kinase mediated signaling. GRAP2 is unique from other GRB2-like adaptor proteins in that it can be regulated by caspase cleavage. It contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The N-terminal SH3 domain of the related protein GRB2 binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212880 cd11947, SH3_GRAP2_N, N-terminal Src homology 3 domain of GRB2-related adaptor protein 2

 Score = 40.2 bits (94), Expect = 9e-05
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 390 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 438
            K+DF  +  D+L FKK D+L ++S D+   W    ++GE G +P  +V
Sbjct: 4   GKFDFTASGEDELSFKKGDVLKILSSDDI--WFKAELNGEEGYVPKNFV 50

GRAP2 is also called GADS (GRB2-related adapter downstream of Shc), GrpL, GRB2L, Mona, or GRID (Grb2-related protein with insert domain). It is expressed specifically in the hematopoietic system. It plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. It also have roles in antigen-receptor and tyrosine kinase mediated signaling. GRAP2 is unique from other GRB2-like adaptor proteins in that it can be regulated by caspase cleavage. It contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The N-terminal SH3 domain of the related protein GRB2 binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212715 cd11781, SH3_Sorbs_1, First Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           K  A Y F      +L  KK DI+ +  + +++W+  ++ +G VG  P  YV+
Sbjct: 1   KARALYPFKAQSAKELSLKKGDIIYIRRQIDKNWYEGEH-NGRVGIFPASYVE 52

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the first SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212715 cd11781, SH3_Sorbs_1, First Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
           K  A Y F      +L  KK DI+ +  + +++W+  ++ +G VG  P  YV+
Sbjct: 1   KARALYPFKAQSAKELSLKKGDIIYIRRQIDKNWYEGEH-NGRVGIFPASYVE 52

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the first SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212893 cd11960, SH3_Abp1_eu, Src homology 3 domain of eumetazoan Actin-binding protein 1

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 15/53 (28%), Positives = 24/53 (45%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           +  A YD+   D  ++ F   DI+  + + +E WW      G  G  P  YV+
Sbjct: 1   RARALYDYQAADDTEISFDPGDIITDIEQIDEGWWRGTGPDGTYGLFPANYVE 53

Abp1, also called drebrin-like protein, is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a helical domain, and a C-terminal SH3 domain. Mammalian Abp1, unlike yeast Abp1, does not contain an acidic domain that interacts with the Arp2/3 complex. It regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. Abp1 deficiency causes abnormal organ structure and function of the spleen, heart, and lung of mice. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212893 cd11960, SH3_Abp1_eu, Src homology 3 domain of eumetazoan Actin-binding protein 1

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 15/53 (28%), Positives = 24/53 (45%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
           +  A YD+   D  ++ F   DI+  + + +E WW      G  G  P  YV+
Sbjct: 1   RARALYDYQAADDTEISFDPGDIITDIEQIDEGWWRGTGPDGTYGLFPANYVE 53

Abp1, also called drebrin-like protein, is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a helical domain, and a C-terminal SH3 domain. Mammalian Abp1, unlike yeast Abp1, does not contain an acidic domain that interacts with the Arp2/3 complex. It regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. Abp1 deficiency causes abnormal organ structure and function of the spleen, heart, and lung of mice. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212883 cd11950, SH3_GRAP2_C, C-terminal Src homology 3 domain of GRB2-related adaptor protein 2

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
           V A YDF+  + D+L F   D++ V+      WW  + + G++G  P  YV
Sbjct: 2   VRALYDFEALEDDELGFNSGDVIEVLDSSNPSWWKGR-LHGKLGLFPANYV 51

GRAP2 is also called GADS (GRB2-related adapter downstream of Shc), GrpL, GRB2L, Mona, or GRID (Grb2-related protein with insert domain). It is expressed specifically in the hematopoietic system. It plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. It also has roles in antigen-receptor and tyrosine kinase mediated signaling. GRAP2 is unique from other GRB2-like adaptor proteins in that it can be regulated by caspase cleavage. It contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRAP2 binds to different motifs found in substrate peptides including the typical PxxP motif in hematopoietic progenitor kinase 1 (HPK1), the RxxK motif in SLP-76 and HPK1, and the RxxxxK motif in phosphatase-like protein HD-PTP. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212883 cd11950, SH3_GRAP2_C, C-terminal Src homology 3 domain of GRB2-related adaptor protein 2

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 438
           V A YDF+  + D+L F   D++ V+      WW  + + G++G  P  YV
Sbjct: 2   VRALYDFEALEDDELGFNSGDVIEVLDSSNPSWWKGR-LHGKLGLFPANYV 51

GRAP2 is also called GADS (GRB2-related adapter downstream of Shc), GrpL, GRB2L, Mona, or GRID (Grb2-related protein with insert domain). It is expressed specifically in the hematopoietic system. It plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. It also has roles in antigen-receptor and tyrosine kinase mediated signaling. GRAP2 is unique from other GRB2-like adaptor proteins in that it can be regulated by caspase cleavage. It contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRAP2 binds to different motifs found in substrate peptides including the typical PxxP motif in hematopoietic progenitor kinase 1 (HPK1), the RxxK motif in SLP-76 and HPK1, and the RxxxxK motif in phosphatase-like protein HD-PTP. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|213005 cd12072, SH3_FNBP1L, Src Homology 3 domain of Formin Binding Protein 1-Like

 Score = 40.0 bits (93), Expect = 1e-04
 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWT-AQNISGEVGSIPVPYVQ 164
           A Y FDG++   L  K+ ++L ++ +D+   WT A+  +GE G +P  Y++
Sbjct: 5   ALYPFDGSNEGTLAMKEGEVLYIIEEDKGDGWTRARKQNGEEGYVPTSYIE 55

FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. The SH3 domain of the related protein, CIP4, associates with Gapex-5, a Rab31 GEF. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|213005 cd12072, SH3_FNBP1L, Src Homology 3 domain of Formin Binding Protein 1-Like

 Score = 40.0 bits (93), Expect = 1e-04
 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 390 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWT-AQNISGEVGSIPVPYVQ 439
           A Y FDG++   L  K+ ++L ++ +D+   WT A+  +GE G +P  Y++
Sbjct: 5   ALYPFDGSNEGTLAMKEGEVLYIIEEDKGDGWTRARKQNGEEGYVPTSYIE 55

FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. The SH3 domain of the related protein, CIP4, associates with Gapex-5, a Rab31 GEF. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212896 cd11963, SH3_STAM2, Src homology 3 domain of Signal Transducing Adaptor Molecule 2

 Score = 40.0 bits (93), Expect = 1e-04
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
           KV A YDF+  + ++L FK  +I+IV+   + +WW  +N  G VG  P  +V
Sbjct: 3   KVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRG-VGLFPSNFV 53

STAM2, also called EAST (Epidermal growth factor receptor-associated protein with SH3 and TAM domain) or Hbp (Hrs binding protein), is part of the endosomal sorting complex required for transport (ESCRT-0). It plays a role in sorting mono-ubiquinated endosomal cargo for trafficking to the lysosome for degradation. It is also involved in the regulation of exocytosis. STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212896 cd11963, SH3_STAM2, Src homology 3 domain of Signal Transducing Adaptor Molecule 2

 Score = 40.0 bits (93), Expect = 1e-04
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 438
           KV A YDF+  + ++L FK  +I+IV+   + +WW  +N  G VG  P  +V
Sbjct: 3   KVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRG-VGLFPSNFV 53

STAM2, also called EAST (Epidermal growth factor receptor-associated protein with SH3 and TAM domain) or Hbp (Hrs binding protein), is part of the endosomal sorting complex required for transport (ESCRT-0). It plays a role in sorting mono-ubiquinated endosomal cargo for trafficking to the lysosome for degradation. It is also involved in the regulation of exocytosis. STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212924 cd11991, SH3_Intersectin1_3, Third Src homology 3 domain (or SH3C) of Intersectin-1

 Score = 39.6 bits (92), Expect = 1e-04
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           +A Y ++ N+  DL F++ D+++V  KD + WWT   +  + G  P  YV+
Sbjct: 3   VAMYTYESNEQGDLTFQQGDVILVTKKDGD-WWTG-TVGDKTGVFPSNYVR 51

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The third SH3 domain (or SH3C) of ITSN1 has been shown to bind many proteins including dynamin1/2, CIN85, c-Cbl, SHIP2, Reps1, synaptojanin-1, and WNK, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212924 cd11991, SH3_Intersectin1_3, Third Src homology 3 domain (or SH3C) of Intersectin-1

 Score = 39.6 bits (92), Expect = 1e-04
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 389 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
           +A Y ++ N+  DL F++ D+++V  KD + WWT   +  + G  P  YV+
Sbjct: 3   VAMYTYESNEQGDLTFQQGDVILVTKKDGD-WWTG-TVGDKTGVFPSNYVR 51

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The third SH3 domain (or SH3C) of ITSN1 has been shown to bind many proteins including dynamin1/2, CIN85, c-Cbl, SHIP2, Reps1, synaptojanin-1, and WNK, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|198273 cd10410, SH2_SH2B1, Src homology 2 (SH2) domain found in SH2B adapter proteins (SH2B1, SH2B2, SH2B3)

 Score = 40.8 bits (95), Expect = 1e-04
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 6/91 (6%)

Query: 7  PHDRNSWYFGMMTRQEAQAILLS--EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 64
          P     W+ GM++R +A  ++L      +G FLVR S T  G YVL      K  H    
Sbjct: 4  PLSGYPWFHGMLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGEYVLTFNFQGKAKHL--- 60

Query: 65 KITNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
          +++  E+  C ++    F  +  +L  ++VH
Sbjct: 61 RLSLNEEGQC-RVQHLWFQSIFDMLEHFRVH 90

SH2B1 (SH2-B, PSM), like other members of the SH2B adapter protein family, contains a pleckstrin homology domain, at least one dimerization domain, and a C-terminal SH2 domain which binds to phosphorylated tyrosines in a variety of tyrosine kinases. SH2B1 and SH2B2 function in signaling pathways found downstream of growth hormone receptor and receptor tyrosine kinases, including the insulin, insulin-like growth factor-I (IGF-I), platelet-derived growth factor (PDGF), nerve growth factor, hepatocyte growth factor, and fibroblast growth factor receptors. SH2B2beta, a new isoform of SH2B2, is an endogenous inhibitor of SH2B1 and/or SH2B2 (SH2B2alpha), negatively regulating insulin signaling and/or JAK2-mediated cellular responses. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 97

>gnl|CDD|198273 cd10410, SH2_SH2B1, Src homology 2 (SH2) domain found in SH2B adapter proteins (SH2B1, SH2B2, SH2B3)

 Score = 40.8 bits (95), Expect = 1e-04
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 6/91 (6%)

Query: 282 PHDRNSWYFGMMTRQEAQAILLS--EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 339
           P     W+ GM++R +A  ++L      +G FLVR S T  G YVL      K  H    
Sbjct: 4   PLSGYPWFHGMLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGEYVLTFNFQGKAKHL--- 60

Query: 340 KITNTEQQTCYKIGDKTFSDLPSLLAFYKVH 370
           +++  E+  C ++    F  +  +L  ++VH
Sbjct: 61  RLSLNEEGQC-RVQHLWFQSIFDMLEHFRVH 90

SH2B1 (SH2-B, PSM), like other members of the SH2B adapter protein family, contains a pleckstrin homology domain, at least one dimerization domain, and a C-terminal SH2 domain which binds to phosphorylated tyrosines in a variety of tyrosine kinases. SH2B1 and SH2B2 function in signaling pathways found downstream of growth hormone receptor and receptor tyrosine kinases, including the insulin, insulin-like growth factor-I (IGF-I), platelet-derived growth factor (PDGF), nerve growth factor, hepatocyte growth factor, and fibroblast growth factor receptors. SH2B2beta, a new isoform of SH2B2, is an endogenous inhibitor of SH2B1 and/or SH2B2 (SH2B2alpha), negatively regulating insulin signaling and/or JAK2-mediated cellular responses. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 97

>gnl|CDD|198251 cd10388, SH2_SOCS7, Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) proteins

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
           WY+G M+ ++A+ +L ++ D G+FLVRDS+     + L  +    V H
Sbjct: 11 GWYWGPMSWEDAEKVLSNKPD-GSFLVRDSSDDRYIFSLSFRSQGSVHH 58

SH2 domain found in SOCS proteins. SOCS was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. Members (SOCS4-SOCS7) were identified by their conserved SOCS box, an adapter motif of 3 helices that associates substrate binding domains, such as the SOCS SH2 domain, ankryin, and WD40 with ubiquitin ligase components. These show limited cytokine induction. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198251 cd10388, SH2_SOCS7, Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) proteins

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 287 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 335
            WY+G M+ ++A+ +L ++ D G+FLVRDS+     + L  +    V H
Sbjct: 11  GWYWGPMSWEDAEKVLSNKPD-GSFLVRDSSDDRYIFSLSFRSQGSVHH 58

SH2 domain found in SOCS proteins. SOCS was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. Members (SOCS4-SOCS7) were identified by their conserved SOCS box, an adapter motif of 3 helices that associates substrate binding domains, such as the SOCS SH2 domain, ankryin, and WD40 with ubiquitin ligase components. These show limited cytokine induction. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198214 cd10351, SH2_SH2D4B, Src homology 2 domain found in the SH2 domain containing protein 4B (SH2D4B)

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 2/52 (3%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 64
          W+ G+++R+EA+A LL     G+FLVR S  I G Y L  +  +   H++++
Sbjct: 9  WFHGIISREEAEA-LLMNATEGSFLVRVSEKIWG-YTLSYRLQSGFKHFLVD 58

SH2D4B contains a single SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|198214 cd10351, SH2_SH2D4B, Src homology 2 domain found in the SH2 domain containing protein 4B (SH2D4B)

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 2/52 (3%)

Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 339
           W+ G+++R+EA+A LL     G+FLVR S  I G Y L  +  +   H++++
Sbjct: 9   WFHGIISREEAEA-LLMNATEGSFLVRVSEKIWG-YTLSYRLQSGFKHFLVD 58

SH2D4B contains a single SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|198250 cd10387, SH2_SOCS6, Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) proteins

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 1/32 (3%)

Query: 10 RNSWYFGMMTRQEAQAILLSEKDNGAFLVRDS 41
          +  WY+G +TR EA+  L +  D G+FLVRDS
Sbjct: 9  KQGWYWGPITRWEAEGKLANVPD-GSFLVRDS 39

SH2 domain found in SOCS proteins. SOCS was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. Members (SOCS4-SOCS7) were identified by their conserved SOCS box, an adapter motif of 3 helices that associates substrate binding domains, such as the SOCS SH2 domain, ankryin, and WD40 with ubiquitin ligase components. These show limited cytokine induction. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 100

>gnl|CDD|198250 cd10387, SH2_SOCS6, Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) proteins

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 1/32 (3%)

Query: 285 RNSWYFGMMTRQEAQAILLSEKDNGAFLVRDS 316
           +  WY+G +TR EA+  L +  D G+FLVRDS
Sbjct: 9   KQGWYWGPITRWEAEGKLANVPD-GSFLVRDS 39

SH2 domain found in SOCS proteins. SOCS was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. Members (SOCS4-SOCS7) were identified by their conserved SOCS box, an adapter motif of 3 helices that associates substrate binding domains, such as the SOCS SH2 domain, ankryin, and WD40 with ubiquitin ligase components. These show limited cytokine induction. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 100

>gnl|CDD|212764 cd11830, SH3_VAV_2, C-terminal (or second) Src homology 3 domain of VAV proteins

 Score = 39.2 bits (91), Expect = 2e-04
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSK-DEEHWWTAQNISGEVGSIPVPYVQK 165
            A+YDF   D  +L  K+ D++ + +K  ++ WW  + I+G +G  P  YV++
Sbjct: 3   KARYDFCARDMRELSLKEGDVVKIYNKKGQQGWWRGE-INGRIGWFPSTYVEE 54

VAV proteins function both as cytoplasmic guanine nucleotide exchange factors (GEFs) for Rho GTPases and scaffold proteins and they play important roles in cell signaling by coupling cell surface receptors to various effector functions. They play key roles in processes that require cytoskeletal reorganization including immune synapse formation, phagocytosis, cell spreading, and platelet aggregation, among others. Vertebrates have three VAV proteins (VAV1, VAV2, and VAV3). VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212764 cd11830, SH3_VAV_2, C-terminal (or second) Src homology 3 domain of VAV proteins

 Score = 39.2 bits (91), Expect = 2e-04
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 389 IAKYDFDGNDPDDLPFKKNDILIVVSK-DEEHWWTAQNISGEVGSIPVPYVQK 440
            A+YDF   D  +L  K+ D++ + +K  ++ WW  + I+G +G  P  YV++
Sbjct: 3   KARYDFCARDMRELSLKEGDVVKIYNKKGQQGWWRGE-INGRIGWFPSTYVEE 54

VAV proteins function both as cytoplasmic guanine nucleotide exchange factors (GEFs) for Rho GTPases and scaffold proteins and they play important roles in cell signaling by coupling cell surface receptors to various effector functions. They play key roles in processes that require cytoskeletal reorganization including immune synapse formation, phagocytosis, cell spreading, and platelet aggregation, among others. Vertebrates have three VAV proteins (VAV1, VAV2, and VAV3). VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212909 cd11976, SH3_VAV1_2, C-terminal (or second) Src homology 3 domain of VAV1 protein

 Score = 38.8 bits (90), Expect = 2e-04
 Identities = 18/51 (35%), Positives = 28/51 (54%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           A+YDF   D  +L  K+ DI+ +++K  +  W    I G VG  P  YV++
Sbjct: 4   ARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRVGWFPANYVEE 54

VAV1 is expressed predominantly in the hematopoietic system and it plays an important role in the development and activation of B and T cells. It is activated by tyrosine phosphorylation to function as a guanine nucleotide exchange factor (GEF) for Rho GTPases following cell surface receptor activation, triggering various effects such as cytoskeletal reorganization, transcription regulation, cell cycle progression, and calcium mobilization. It also serves as a scaffold protein and has been shown to interact with Ku70, Socs1, Janus kinase 2, SIAH2, S100B, Abl gene, ZAP-70, SLP76, and Syk, among others. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The C-terminal SH3 domain of Vav1 interacts with a wide variety of proteins including cytoskeletal regulators (zyxin), RNA-binding proteins (Sam68), transcriptional regulators, viral proteins, and dynamin 2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212909 cd11976, SH3_VAV1_2, C-terminal (or second) Src homology 3 domain of VAV1 protein

 Score = 38.8 bits (90), Expect = 2e-04
 Identities = 18/51 (35%), Positives = 28/51 (54%)

Query: 390 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 440
           A+YDF   D  +L  K+ DI+ +++K  +  W    I G VG  P  YV++
Sbjct: 4   ARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRVGWFPANYVEE 54

VAV1 is expressed predominantly in the hematopoietic system and it plays an important role in the development and activation of B and T cells. It is activated by tyrosine phosphorylation to function as a guanine nucleotide exchange factor (GEF) for Rho GTPases following cell surface receptor activation, triggering various effects such as cytoskeletal reorganization, transcription regulation, cell cycle progression, and calcium mobilization. It also serves as a scaffold protein and has been shown to interact with Ku70, Socs1, Janus kinase 2, SIAH2, S100B, Abl gene, ZAP-70, SLP76, and Syk, among others. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The C-terminal SH3 domain of Vav1 interacts with a wide variety of proteins including cytoskeletal regulators (zyxin), RNA-binding proteins (Sam68), transcriptional regulators, viral proteins, and dynamin 2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212737 cd11803, SH3_Endophilin_A, Src homology 3 domain of Endophilin-A

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 2/35 (5%)

Query: 229 GDIIKVTKTNINGQW-EGELNGKTGHFPFTHVEFI 262
           GDII +T   I+  W EG +NG++G FP  +VE +
Sbjct: 22  GDIITLT-NQIDENWYEGMVNGQSGFFPVNYVEVL 55

Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms (A1, A2, and A3). Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. They tubulate membranes and regulate calcium influx into neurons to trigger the activation of the endocytic machinery. They are also involved in the sorting of plasma membrane proteins, actin filament assembly, and the uncoating of clathrin-coated vesicles for fusion with endosomes. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212737 cd11803, SH3_Endophilin_A, Src homology 3 domain of Endophilin-A

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 2/35 (5%)

Query: 504 GDIIKVTKTNINGQW-EGELNGKTGHFPFTHVEFI 537
           GDII +T   I+  W EG +NG++G FP  +VE +
Sbjct: 22  GDIITLT-NQIDENWYEGMVNGQSGFFPVNYVEVL 55

Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms (A1, A2, and A3). Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. They tubulate membranes and regulate calcium influx into neurons to trigger the activation of the endocytic machinery. They are also involved in the sorting of plasma membrane proteins, actin filament assembly, and the uncoating of clathrin-coated vesicles for fusion with endosomes. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212995 cd12062, SH3_Caskin1, Src Homology 3 domain of CASK interacting protein 1

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 6/52 (11%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGEL------NGKTGHFPFTHVEFI 262
           N YD T+L ++ GD+I V + + +G+W+G +      N + G+FP + VE I
Sbjct: 11  NNYDLTSLNIKAGDVITVLEQHPDGRWKGCIHDNRTGNDRVGYFPSSLVEAI 62

Caskin1 is a multidomain adaptor protein that contains six ankyrin repeats, a single SH3 domain, tandem sterile alpha motif (SAM) domains, and a long disordered proline-rich region. It is expressed at high levels in the brain and is localized in presynaptic regions. It binds to the multidomain scaffolding protein CASK through the CaMK domain in competition with Munc-interacting protein 1 (Mint1). CASK participates in one of two evolutionarily conserved tripartite complexes containing either Mint1 and Velis or Caskin1 and Velis. Caskin1 may play a role in infantile myoclonic epilepsy. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 62

>gnl|CDD|212995 cd12062, SH3_Caskin1, Src Homology 3 domain of CASK interacting protein 1

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 6/52 (11%)

Query: 492 NAYDKTALKLEIGDIIKVTKTNINGQWEGEL------NGKTGHFPFTHVEFI 537
           N YD T+L ++ GD+I V + + +G+W+G +      N + G+FP + VE I
Sbjct: 11  NNYDLTSLNIKAGDVITVLEQHPDGRWKGCIHDNRTGNDRVGYFPSSLVEAI 62

Caskin1 is a multidomain adaptor protein that contains six ankyrin repeats, a single SH3 domain, tandem sterile alpha motif (SAM) domains, and a long disordered proline-rich region. It is expressed at high levels in the brain and is localized in presynaptic regions. It binds to the multidomain scaffolding protein CASK through the CaMK domain in competition with Munc-interacting protein 1 (Mint1). CASK participates in one of two evolutionarily conserved tripartite complexes containing either Mint1 and Velis or Caskin1 and Velis. Caskin1 may play a role in infantile myoclonic epilepsy. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 62

>gnl|CDD|212798 cd11864, SH3_PEX13_eumet, Src Homology 3 domain of eumetazoan Peroxisomal biogenesis factor 13

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEH----WWTAQNISGEVGSIPVPYVQ 164
            A+YDF     D+L F+  D L +  K+ +     W  A     ++G +P  YV+
Sbjct: 3   RAEYDFVAESEDELSFRAGDKLRLAPKELQPRVRGWLLATVDGQKIGLVPANYVK 57

PEX13 is a peroxin and is required for protein import into the peroxisomal matrix and membrane. It is an integral membrane protein that is essential for the localization of PEX14 and the import of proteins containing the peroxisome matrix targeting signals, PTS1 and PTS2. Mutations of the PEX13 gene in humans lead to a wide range of peroxisome biogenesis disorders (PBDs), the most severe of which is known as Zellweger syndrome (ZS), a severe multisystem disorder characterized by hypotonia, psychomotor retardation, and neuronal migration defects. PEX13 contains two transmembrane regions and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212798 cd11864, SH3_PEX13_eumet, Src Homology 3 domain of eumetazoan Peroxisomal biogenesis factor 13

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 389 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEH----WWTAQNISGEVGSIPVPYVQ 439
            A+YDF     D+L F+  D L +  K+ +     W  A     ++G +P  YV+
Sbjct: 3   RAEYDFVAESEDELSFRAGDKLRLAPKELQPRVRGWLLATVDGQKIGLVPANYVK 57

PEX13 is a peroxin and is required for protein import into the peroxisomal matrix and membrane. It is an integral membrane protein that is essential for the localization of PEX14 and the import of proteins containing the peroxisome matrix targeting signals, PTS1 and PTS2. Mutations of the PEX13 gene in humans lead to a wide range of peroxisome biogenesis disorders (PBDs), the most severe of which is known as Zellweger syndrome (ZS), a severe multisystem disorder characterized by hypotonia, psychomotor retardation, and neuronal migration defects. PEX13 contains two transmembrane regions and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212968 cd12035, SH3_MPP1-like, Src Homology 3 domain of Membrane Protein, Palmitoylated 1 (or MAGUK p55 subfamily member 1)-like proteins

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 12/60 (20%)

Query: 113 VIAKYDFDGNDPDDL--------PFKKNDILIVVSKDEEHWWTAQNISGE---VGSIPVP 161
           V A++D+D +  DDL         FK  DIL ++SKD+ +WW A+         G IP P
Sbjct: 2   VRAQFDYDPSK-DDLIPCQQAGIAFKTGDILQIISKDDHNWWQARKPGASKEPAGLIPSP 60

This subfamily includes MPP1, CASK (Calcium/calmodulin-dependent Serine protein Kinase), Caenorhabditis elegans lin-2, and similar proteins. MPP1 and CASK are scaffolding proteins from the MAGUK (membrane-associated guanylate kinase) protein family, which is characterized by the presence of a core of three domains: PDZ, SH3, and guanylate kinase (GuK). In addition, they also have the Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. CASK and lin-2 also contain an N-terminal calmodulin-dependent kinase (CaMK)-like domain and two L27 domains. MPP1 is ubiquitously-expressed and plays roles in regulating neutrophil polarity, cell shape, hair cell development, and neural development and patterning of the retina. CASK is highly expressed in the mammalian nervous system and plays roles in synaptic protein targeting, neural development, and gene expression regulation. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212968 cd12035, SH3_MPP1-like, Src Homology 3 domain of Membrane Protein, Palmitoylated 1 (or MAGUK p55 subfamily member 1)-like proteins

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 12/60 (20%)

Query: 388 VIAKYDFDGNDPDDL--------PFKKNDILIVVSKDEEHWWTAQNISGE---VGSIPVP 436
           V A++D+D +  DDL         FK  DIL ++SKD+ +WW A+         G IP P
Sbjct: 2   VRAQFDYDPSK-DDLIPCQQAGIAFKTGDILQIISKDDHNWWQARKPGASKEPAGLIPSP 60

This subfamily includes MPP1, CASK (Calcium/calmodulin-dependent Serine protein Kinase), Caenorhabditis elegans lin-2, and similar proteins. MPP1 and CASK are scaffolding proteins from the MAGUK (membrane-associated guanylate kinase) protein family, which is characterized by the presence of a core of three domains: PDZ, SH3, and guanylate kinase (GuK). In addition, they also have the Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. CASK and lin-2 also contain an N-terminal calmodulin-dependent kinase (CaMK)-like domain and two L27 domains. MPP1 is ubiquitously-expressed and plays roles in regulating neutrophil polarity, cell shape, hair cell development, and neural development and patterning of the retina. CASK is highly expressed in the mammalian nervous system and plays roles in synaptic protein targeting, neural development, and gene expression regulation. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212695 cd11761, SH3_FCHSD_1, First Src Homology 3 domain of FCH and double SH3 domains proteins

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 117 YDFDGNDPDDLPFKKNDILIVVSK-DEEHWWTAQNISGEVGSIPVPYVQK 165
           Y ++   PD+L   + + L V+   D + W  A+N SGEVG +P  Y+Q 
Sbjct: 8   YSYEAQRPDELTITEGEELEVIEDGDGDGWVKARNKSGEVGYVPENYLQF 57

This group is composed of FCH and double SH3 domains protein 1 (FCHSD1) and FCHSD2. These proteins have a common domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. They have only been characterized in silico and their functions remain unknown. This group also includes the insect protein, nervous wreck, which acts as a regulator of synaptic growth signaling. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212695 cd11761, SH3_FCHSD_1, First Src Homology 3 domain of FCH and double SH3 domains proteins

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 392 YDFDGNDPDDLPFKKNDILIVVSK-DEEHWWTAQNISGEVGSIPVPYVQK 440
           Y ++   PD+L   + + L V+   D + W  A+N SGEVG +P  Y+Q 
Sbjct: 8   YSYEAQRPDELTITEGEELEVIEDGDGDGWVKARNKSGEVGYVPENYLQF 57

This group is composed of FCH and double SH3 domains protein 1 (FCHSD1) and FCHSD2. These proteins have a common domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. They have only been characterized in silico and their functions remain unknown. This group also includes the insect protein, nervous wreck, which acts as a regulator of synaptic growth signaling. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212852 cd11919, SH3_Sorbs1_1, First Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin

 Score = 38.8 bits (90), Expect = 2e-04
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           AK+DF      +LP +K DI+ +  + +++W+  ++  G VG  P  Y++
Sbjct: 5   AKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEH-HGRVGIFPRSYIE 53

Sorbs1 is also called ponsin, SH3P12, or CAP (c-Cbl associated protein). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It binds Cbl and plays a major role in regulating the insulin signaling pathway by enhancing insulin-induced phosphorylation of Cbl. Sorbs1, like vinexin, localizes at cell-ECM and cell-cell adhesion sites where it binds vinculin, paxillin, and afadin. It may function in the control of cell motility. Other interaction partners of Sorbs1 include c-Abl, Sos, flotillin, Grb4, ataxin-7, filamin C, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212852 cd11919, SH3_Sorbs1_1, First Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin

 Score = 38.8 bits (90), Expect = 2e-04
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 390 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
           AK+DF      +LP +K DI+ +  + +++W+  ++  G VG  P  Y++
Sbjct: 5   AKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEH-HGRVGIFPRSYIE 53

Sorbs1 is also called ponsin, SH3P12, or CAP (c-Cbl associated protein). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It binds Cbl and plays a major role in regulating the insulin signaling pathway by enhancing insulin-induced phosphorylation of Cbl. Sorbs1, like vinexin, localizes at cell-ECM and cell-cell adhesion sites where it binds vinculin, paxillin, and afadin. It may function in the control of cell motility. Other interaction partners of Sorbs1 include c-Abl, Sos, flotillin, Grb4, ataxin-7, filamin C, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|198261 cd10398, SH2_Tec_Txk, Src homology 2 (SH2) domain found in Tec protein, Txk

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 12/88 (13%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNK------VSHYIINKI 66
          WY   +TR +A+ +L  E   GAF+VRDS   LG+Y + V    +      + HY I K 
Sbjct: 8  WYHKNITRNQAERLLRQESKEGAFIVRDSRH-LGSYTISVFTRARRSTEASIKHYQIKK- 65

Query: 67 TNTEQQTCYKIGDK-TFSDLPSLLAFYK 93
           N   Q  + + ++  F  +P L+ +++
Sbjct: 66 -NDSGQ--WYVAERHLFQSIPELIQYHQ 90

A member of the Tec protein tyrosine kinase Txk is expressed in thymus, spleen, lymph node, T lymphocytes, NK cells, mast cell lines, and myeloid cell line. Txk plays a role in TCR signal transduction, T cell development, and selection which is analogous to the function of Itk. Txk has been shown to interact with IFN-gamma. Unlike most of the Tec family members Txk lacks a PH domain. Instead Txk has a unique region containing a palmitoylated cysteine string which has a similar membrane tethering function as the PH domain. Txk also has a zinc-binding motif, a SH3 domain, a SH2 domain, and a protein kinase catalytic domain. The TH domain consists of a Zn2+-binding Btk motif and a proline-rich region. The Btk motif is found in Tec kinases, Ras GAP, and IGBP and crucial to the function of the PH domain. It is not present in Txk which is not surprising since it lacks a PH domain. The type 1 splice form of the Drosophila homolog also lacks both the PH domain and the Btk motif. The proline-rich regions are highly conserved for the most part with the exception of Bmx whose residues surrounding the PXXP motif are not conserved (TH-like) and Btk29A which is entirely unique with large numbers of glycine residues (TH-extended). Tec family members all lack a C-terminal tyrosine having an autoinhibitory function in its phosphorylated state. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 106

>gnl|CDD|198261 cd10398, SH2_Tec_Txk, Src homology 2 (SH2) domain found in Tec protein, Txk

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 12/88 (13%)

Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNK------VSHYIINKI 341
           WY   +TR +A+ +L  E   GAF+VRDS   LG+Y + V    +      + HY I K 
Sbjct: 8   WYHKNITRNQAERLLRQESKEGAFIVRDSRH-LGSYTISVFTRARRSTEASIKHYQIKK- 65

Query: 342 TNTEQQTCYKIGDK-TFSDLPSLLAFYK 368
            N   Q  + + ++  F  +P L+ +++
Sbjct: 66  -NDSGQ--WYVAERHLFQSIPELIQYHQ 90

A member of the Tec protein tyrosine kinase Txk is expressed in thymus, spleen, lymph node, T lymphocytes, NK cells, mast cell lines, and myeloid cell line. Txk plays a role in TCR signal transduction, T cell development, and selection which is analogous to the function of Itk. Txk has been shown to interact with IFN-gamma. Unlike most of the Tec family members Txk lacks a PH domain. Instead Txk has a unique region containing a palmitoylated cysteine string which has a similar membrane tethering function as the PH domain. Txk also has a zinc-binding motif, a SH3 domain, a SH2 domain, and a protein kinase catalytic domain. The TH domain consists of a Zn2+-binding Btk motif and a proline-rich region. The Btk motif is found in Tec kinases, Ras GAP, and IGBP and crucial to the function of the PH domain. It is not present in Txk which is not surprising since it lacks a PH domain. The type 1 splice form of the Drosophila homolog also lacks both the PH domain and the Btk motif. The proline-rich regions are highly conserved for the most part with the exception of Bmx whose residues surrounding the PXXP motif are not conserved (TH-like) and Btk29A which is entirely unique with large numbers of glycine residues (TH-extended). Tec family members all lack a C-terminal tyrosine having an autoinhibitory function in its phosphorylated state. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 106

>gnl|CDD|198225 cd10362, SH2_Src_Lck, Src homology 2 (SH2) domain in lymphocyte cell kinase (Lck)

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 9/86 (10%)

Query: 13 WYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKENNK-----VSHYIINKI 66
          W+F  ++R +A+  LL+  + +G+FL+R+S T  G++ L V++ ++     V HY   KI
Sbjct: 5  WFFKNLSRNDAERQLLAPGNTHGSFLIRESETTAGSFSLSVRDFDQNQGEVVKHY---KI 61

Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFY 92
           N +    Y     TF  L  L+  Y
Sbjct: 62 RNLDNGGFYISPRITFPGLHELVRHY 87

Lck is a member of the Src non-receptor type tyrosine kinase family of proteins. It is expressed in the brain, T-cells, and NK cells. The unique domain of Lck mediates its interaction with two T-cell surface molecules, CD4 and CD8. It associates with their cytoplasmic tails on CD4 T helper cells and CD8 cytotoxic T cells to assist signaling from the T cell receptor (TCR) complex. When the T cell receptor is engaged by the specific antigen presented by MHC, Lck phosphorylase the intracellular chains of the CD3 and zeta-chains of the TCR complex, allowing ZAP-70 to bind them. Lck then phosphorylates and activates ZAP-70, which in turn phosphorylates Linker of Activated T cells (LAT), a transmembrane protein that serves as a docking site for proteins including: Shc-Grb2-SOS, PI3K, and phospholipase C (PLC). The tyrosine phosphorylation cascade culminates in the intracellular mobilization of a calcium ions and activation of important signaling cascades within the lymphocyte, including the Ras-MEK-ERK pathway, which goes on to activate certain transcription factors such as NFAT, NF-kappaB, and AP-1. These transcription factors regulate the production cytokines such as Interleukin-2 that promote long-term proliferation and differentiation of the activated lymphocytes. The N-terminal tail of Lck is myristoylated and palmitoylated and it tethers the protein to the plasma membrane of the cell. Lck also contains a SH3 domain, a SH2 domain, and a C-terminal tyrosine kinase domain. Lck has 2 phosphorylation sites, the first an autophosphorylation site that is linked to activation of the protein and the second which is phosphorylated by Csk, which inhibits it. Lck is also inhibited by SHP-1 dephosphorylation and by Cbl ubiquitin ligase, which is part of the ubiquitin-mediated pathway. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198225 cd10362, SH2_Src_Lck, Src homology 2 (SH2) domain in lymphocyte cell kinase (Lck)

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 9/86 (10%)

Query: 288 WYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKENNK-----VSHYIINKI 341
           W+F  ++R +A+  LL+  + +G+FL+R+S T  G++ L V++ ++     V HY   KI
Sbjct: 5   WFFKNLSRNDAERQLLAPGNTHGSFLIRESETTAGSFSLSVRDFDQNQGEVVKHY---KI 61

Query: 342 TNTEQQTCYKIGDKTFSDLPSLLAFY 367
            N +    Y     TF  L  L+  Y
Sbjct: 62  RNLDNGGFYISPRITFPGLHELVRHY 87

Lck is a member of the Src non-receptor type tyrosine kinase family of proteins. It is expressed in the brain, T-cells, and NK cells. The unique domain of Lck mediates its interaction with two T-cell surface molecules, CD4 and CD8. It associates with their cytoplasmic tails on CD4 T helper cells and CD8 cytotoxic T cells to assist signaling from the T cell receptor (TCR) complex. When the T cell receptor is engaged by the specific antigen presented by MHC, Lck phosphorylase the intracellular chains of the CD3 and zeta-chains of the TCR complex, allowing ZAP-70 to bind them. Lck then phosphorylates and activates ZAP-70, which in turn phosphorylates Linker of Activated T cells (LAT), a transmembrane protein that serves as a docking site for proteins including: Shc-Grb2-SOS, PI3K, and phospholipase C (PLC). The tyrosine phosphorylation cascade culminates in the intracellular mobilization of a calcium ions and activation of important signaling cascades within the lymphocyte, including the Ras-MEK-ERK pathway, which goes on to activate certain transcription factors such as NFAT, NF-kappaB, and AP-1. These transcription factors regulate the production cytokines such as Interleukin-2 that promote long-term proliferation and differentiation of the activated lymphocytes. The N-terminal tail of Lck is myristoylated and palmitoylated and it tethers the protein to the plasma membrane of the cell. Lck also contains a SH3 domain, a SH2 domain, and a C-terminal tyrosine kinase domain. Lck has 2 phosphorylation sites, the first an autophosphorylation site that is linked to activation of the protein and the second which is phosphorylated by Csk, which inhibits it. Lck is also inhibited by SHP-1 dephosphorylation and by Cbl ubiquitin ligase, which is part of the ubiquitin-mediated pathway. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|212994 cd12061, SH3_betaPIX, Src Homology 3 domain of beta-Pak Interactive eXchange factor

 Score = 38.5 bits (89), Expect = 3e-04
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           V AK++F   + D+L F K D++ V   +E  WW     +G  G  P  YV++
Sbjct: 2   VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEG-THNGRTGWFPSNYVRE 53

Beta-PIX, also called Rho guanine nucleotide exchange factor 7 (ARHGEF7) or Cool (Cloned out of Library)-1, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and plays important roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212994 cd12061, SH3_betaPIX, Src Homology 3 domain of beta-Pak Interactive eXchange factor

 Score = 38.5 bits (89), Expect = 3e-04
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 440
           V AK++F   + D+L F K D++ V   +E  WW     +G  G  P  YV++
Sbjct: 2   VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEG-THNGRTGWFPSNYVRE 53

Beta-PIX, also called Rho guanine nucleotide exchange factor 7 (ARHGEF7) or Cool (Cloned out of Library)-1, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and plays important roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212892 cd11959, SH3_Cortactin, Src homology 3 domain of Cortactin

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           +A YD+   D D++ F  +DI+  +   +E WW      G+ G  P  YV+
Sbjct: 3   VALYDYQAADDDEISFDPDDIITNIEMIDEGWWRGV-CRGKYGLFPANYVE 52

Cortactin was originally identified as a substrate of Src kinase. It is an actin regulatory protein that binds to the Arp2/3 complex and stabilizes branched actin filaments. It is involved in cellular processes that affect cell motility, adhesion, migration, endocytosis, and invasion. It is expressed ubiquitously except in hematopoietic cells, where the homolog hematopoietic lineage cell-specific 1 (HS1) is expressed instead. Cortactin contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region interacts with the Arp2/3 complex and F-actin, and is crucial in regulating branched actin assembly. Cortactin also serves as a scaffold and provides a bridge to the actin cytoskeleton for membrane trafficking and signaling proteins that bind to its SH3 domain. Binding partners for the SH3 domain of cortactin include dynamin2, N-WASp, MIM, FGD1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212892 cd11959, SH3_Cortactin, Src homology 3 domain of Cortactin

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 389 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
           +A YD+   D D++ F  +DI+  +   +E WW      G+ G  P  YV+
Sbjct: 3   VALYDYQAADDDEISFDPDDIITNIEMIDEGWWRGV-CRGKYGLFPANYVE 52

Cortactin was originally identified as a substrate of Src kinase. It is an actin regulatory protein that binds to the Arp2/3 complex and stabilizes branched actin filaments. It is involved in cellular processes that affect cell motility, adhesion, migration, endocytosis, and invasion. It is expressed ubiquitously except in hematopoietic cells, where the homolog hematopoietic lineage cell-specific 1 (HS1) is expressed instead. Cortactin contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region interacts with the Arp2/3 complex and F-actin, and is crucial in regulating branched actin assembly. Cortactin also serves as a scaffold and provides a bridge to the actin cytoskeleton for membrane trafficking and signaling proteins that bind to its SH3 domain. Binding partners for the SH3 domain of cortactin include dynamin2, N-WASp, MIM, FGD1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212832 cd11899, SH3_Nck2_1, First Src Homology 3 domain of Nck2 adaptor protein

 Score = 38.6 bits (89), Expect = 3e-04
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           VIAK+D+      +L  KKN+ L ++  D + WW  +N +   G +P  YV++
Sbjct: 6   VIAKWDYTAQQDQELDIKKNERLWLLD-DSKTWWRVRNAANRTGYVPSNYVER 57

Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds neuronal signaling proteins such as ephrinB and Disabled-1 (Dab-1) exclusively. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The first SH3 domain of Nck2 binds the PxxDY sequence in the CD3e cytoplasmic tail; this binding inhibits phosphorylation by Src kinases, resulting in the downregulation of TCR surface expression. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212832 cd11899, SH3_Nck2_1, First Src Homology 3 domain of Nck2 adaptor protein

 Score = 38.6 bits (89), Expect = 3e-04
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 440
           VIAK+D+      +L  KKN+ L ++  D + WW  +N +   G +P  YV++
Sbjct: 6   VIAKWDYTAQQDQELDIKKNERLWLLD-DSKTWWRVRNAANRTGYVPSNYVER 57

Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds neuronal signaling proteins such as ephrinB and Disabled-1 (Dab-1) exclusively. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The first SH3 domain of Nck2 binds the PxxDY sequence in the CD3e cytoplasmic tail; this binding inhibits phosphorylation by Src kinases, resulting in the downregulation of TCR surface expression. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212987 cd12054, SH3_CD2AP_2, Second Src Homology 3 domain (SH3B) of CD2-associated protein

 Score = 38.4 bits (89), Expect = 3e-04
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 2/46 (4%)

Query: 215 VPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
           VP   D+  L+L++GDII + +    G W G LNGK+G FP   V+
Sbjct: 10  VPQNEDE--LELKVGDIIDINEEVEEGWWSGTLNGKSGLFPSNFVK 53

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the second SH3 domain (SH3B) of CD2AP. SH3B binds to c-Cbl in a site (TPSSRPLR is the core binding motif) distinct from the c-Cbl/SH3A binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212987 cd12054, SH3_CD2AP_2, Second Src Homology 3 domain (SH3B) of CD2-associated protein

 Score = 38.4 bits (89), Expect = 3e-04
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 2/46 (4%)

Query: 490 VPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 535
           VP   D+  L+L++GDII + +    G W G LNGK+G FP   V+
Sbjct: 10  VPQNEDE--LELKVGDIIDINEEVEEGWWSGTLNGKSGLFPSNFVK 53

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the second SH3 domain (SH3B) of CD2AP. SH3B binds to c-Cbl in a site (TPSSRPLR is the core binding motif) distinct from the c-Cbl/SH3A binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212837 cd11904, SH3_Nck1_3, Third Src Homology 3 domain of Nck1 adaptor protein

 Score = 38.5 bits (89), Expect = 3e-04
 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEE--HWWTAQNISGEVGSIPVPYV 163
           V A Y F  ++ ++L F+K +++ V+ K E    WW  +  +G+VG +P  YV
Sbjct: 3   VQALYPFSSSNDEELNFEKGEVMDVIEKPENDPEWWKCRKANGQVGLVPKNYV 55

Nck1 (also called Nckalpha) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds and activates RasGAP, resulting in the downregulation of Ras. It is also involved in the signaling of endothilin-mediated inhibition of cell migration. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The third SH3 domain of Nck appears to prefer ligands with a PxAPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212837 cd11904, SH3_Nck1_3, Third Src Homology 3 domain of Nck1 adaptor protein

 Score = 38.5 bits (89), Expect = 3e-04
 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEE--HWWTAQNISGEVGSIPVPYV 438
           V A Y F  ++ ++L F+K +++ V+ K E    WW  +  +G+VG +P  YV
Sbjct: 3   VQALYPFSSSNDEELNFEKGEVMDVIEKPENDPEWWKCRKANGQVGLVPKNYV 55

Nck1 (also called Nckalpha) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds and activates RasGAP, resulting in the downregulation of Ras. It is also involved in the signaling of endothilin-mediated inhibition of cell migration. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The third SH3 domain of Nck appears to prefer ligands with a PxAPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212905 cd11972, SH3_Abi2, Src homology 3 domain of Abl Interactor 2

 Score = 38.5 bits (89), Expect = 4e-04
 Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
           +EKV+A YD+  +  D+L F++  I+ V+ K+++ W+    ++G  G  P  YV+   
Sbjct: 2   LEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGV-MNGVTGLFPGNYVESIM 58

Abi2 is highly expressed in the brain and eye. It regulates actin cytoskeletal reorganization at adherens junctions and dendritic spines, which is important in cell morphogenesis, migration, and cognitive function. Mice deficient with Abi2 show defects in orientation and migration of lens fibers, neuronal migration, dendritic spine morphology, as well as deficits in learning and memory. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212905 cd11972, SH3_Abi2, Src homology 3 domain of Abl Interactor 2

 Score = 38.5 bits (89), Expect = 4e-04
 Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 442
           +EKV+A YD+  +  D+L F++  I+ V+ K+++ W+    ++G  G  P  YV+   
Sbjct: 2   LEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGV-MNGVTGLFPGNYVESIM 58

Abi2 is highly expressed in the brain and eye. It regulates actin cytoskeletal reorganization at adherens junctions and dendritic spines, which is important in cell morphogenesis, migration, and cognitive function. Mice deficient with Abi2 show defects in orientation and migration of lens fibers, neuronal migration, dendritic spine morphology, as well as deficits in learning and memory. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212751 cd11817, SH3_Eve1_4, Fourth Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 38.2 bits (89), Expect = 4e-04
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPY 162
            +A YDF G   +DL F++ D ++V    +  W   + ++G  G  P  +
Sbjct: 2   AVALYDFTGETEEDLSFQRGDRILVTEHLDAEWSRGR-LNGREGIFPRAF 50

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212751 cd11817, SH3_Eve1_4, Fourth Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 38.2 bits (89), Expect = 4e-04
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPY 437
            +A YDF G   +DL F++ D ++V    +  W   + ++G  G  P  +
Sbjct: 2   AVALYDFTGETEEDLSFQRGDRILVTEHLDAEWSRGR-LNGREGIFPRAF 50

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212886 cd11953, SH3_ASPP2, Src Homology 3 (SH3) domain of Apoptosis Stimulating of p53 protein 2

 Score = 38.4 bits (89), Expect = 4e-04
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 4/50 (8%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSK---DEEHWWTAQNISGEVGSIP 159
           V A +D++G   D+L FK+ D + ++ +   DE  WW A+    E G +P
Sbjct: 3   VYALWDYEGESDDELSFKEGDCMTILRREDEDETEWWWARLNDKE-GYVP 51

ASPP2 is the full length form of the previously-identified tumor supressor, p53-binding protein 2 (p53BP2). ASPP2 activates the apoptotic function of the p53 family of tumor suppressors (p53, p63, and p73). It plays a central role in regulating apoptosis and cell growth; ASPP2-deficient mice show postnatal death. Downregulated expression of ASPP2 is frequently found in breast tumors, lung cancer, and diffuse large B-cell lymphoma where it is correlated with a poor clinical outcome. ASPP2 contains a proline-rich region, four ankyrin (ANK) repeats, and an SH3 domain at its C-terminal half. The SH3 domain and the ANK repeats of ASPP2 contribute to the p53 binding site; they bind to the DNA binding domain of p53. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212886 cd11953, SH3_ASPP2, Src Homology 3 (SH3) domain of Apoptosis Stimulating of p53 protein 2

 Score = 38.4 bits (89), Expect = 4e-04
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 4/50 (8%)

Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSK---DEEHWWTAQNISGEVGSIP 434
           V A +D++G   D+L FK+ D + ++ +   DE  WW A+    E G +P
Sbjct: 3   VYALWDYEGESDDELSFKEGDCMTILRREDEDETEWWWARLNDKE-GYVP 51

ASPP2 is the full length form of the previously-identified tumor supressor, p53-binding protein 2 (p53BP2). ASPP2 activates the apoptotic function of the p53 family of tumor suppressors (p53, p63, and p73). It plays a central role in regulating apoptosis and cell growth; ASPP2-deficient mice show postnatal death. Downregulated expression of ASPP2 is frequently found in breast tumors, lung cancer, and diffuse large B-cell lymphoma where it is correlated with a poor clinical outcome. ASPP2 contains a proline-rich region, four ankyrin (ANK) repeats, and an SH3 domain at its C-terminal half. The SH3 domain and the ANK repeats of ASPP2 contribute to the p53 binding site; they bind to the DNA binding domain of p53. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212830 cd11897, SH3_SNX18, Src Homology 3 domain of Sorting nexin 18

 Score = 38.4 bits (89), Expect = 4e-04
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVS-KDEEHWWTAQNISGEVGSIPVPYVQ 164
           A YDF   +P ++  +++++L + S +D E W    N  G+ G  P  YV+
Sbjct: 4   ALYDFRSENPGEISLREHEVLSLCSEQDIEGWLEGVNSRGDRGLFPASYVE 54

SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. It binds FIP5 and is required for apical lumen formation. It may also play a role in axonal elongation. SNXs are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNX18 also contains BAR and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212830 cd11897, SH3_SNX18, Src Homology 3 domain of Sorting nexin 18

 Score = 38.4 bits (89), Expect = 4e-04
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 390 AKYDFDGNDPDDLPFKKNDILIVVS-KDEEHWWTAQNISGEVGSIPVPYVQ 439
           A YDF   +P ++  +++++L + S +D E W    N  G+ G  P  YV+
Sbjct: 4   ALYDFRSENPGEISLREHEVLSLCSEQDIEGWLEGVNSRGDRGLFPASYVE 54

SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. It binds FIP5 and is required for apical lumen formation. It may also play a role in axonal elongation. SNXs are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNX18 also contains BAR and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212750 cd11816, SH3_Eve1_3, Third Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 38.2 bits (89), Expect = 4e-04
 Identities = 14/50 (28%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
           +A++DF+G   D+L F + D++ +     E W   + ++G++G  P+ +V
Sbjct: 3   VARFDFEGEQEDELSFSEGDVITLKEYVGEEWAKGE-LNGKIGIFPLNFV 51

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212750 cd11816, SH3_Eve1_3, Third Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 38.2 bits (89), Expect = 4e-04
 Identities = 14/50 (28%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 389 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 438
           +A++DF+G   D+L F + D++ +     E W   + ++G++G  P+ +V
Sbjct: 3   VARFDFEGEQEDELSFSEGDVITLKEYVGEEWAKGE-LNGKIGIFPLNFV 51

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212910 cd11977, SH3_VAV2_2, C-terminal (or second) Src homology 3 domain of VAV2 protein

 Score = 38.5 bits (89), Expect = 4e-04
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 218 AYDKTALKLEIGDIIKVTKT--NINGQWEGELNGKTGHFPFTHVE 260
           A D   L L  GD++++        G W+GE NG+ G FP T+VE
Sbjct: 11  ARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVE 55

VAV2 is widely expressed and functions as a guanine nucleotide exchange factor (GEF) for RhoA, RhoB and RhoG and also activates Rac1 and Cdc42. It is implicated in many cellular and physiological functions including blood pressure control, eye development, neurite outgrowth and branching, EGFR endocytosis and degradation, and cell cluster morphology, among others. It has been reported to associate with Nek3. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212910 cd11977, SH3_VAV2_2, C-terminal (or second) Src homology 3 domain of VAV2 protein

 Score = 38.5 bits (89), Expect = 4e-04
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 493 AYDKTALKLEIGDIIKVTKT--NINGQWEGELNGKTGHFPFTHVE 535
           A D   L L  GD++++        G W+GE NG+ G FP T+VE
Sbjct: 11  ARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVE 55

VAV2 is widely expressed and functions as a guanine nucleotide exchange factor (GEF) for RhoA, RhoB and RhoG and also activates Rac1 and Cdc42. It is implicated in many cellular and physiological functions including blood pressure control, eye development, neurite outgrowth and branching, EGFR endocytosis and degradation, and cell cluster morphology, among others. It has been reported to associate with Nek3. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212857 cd11924, SH3_Vinexin_2, Second Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)

 Score = 38.0 bits (88), Expect = 5e-04
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISG--EVGSIPVPYVQ 164
           +A+Y F G+   +L F+K + + ++ K  E+W+  + I+G    G  P  YVQ
Sbjct: 4   VAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGR-ITGTGRQGIFPASYVQ 55

Vinexin is also called Sorbs3, SH3P3, and SH3-containing adapter molecule 1 (SCAM-1). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. Vinexin was first identified as a vinculin binding protein; it is co-localized with vinculin at cell-ECM and cell-cell adhesion sites. There are several splice variants of vinexin: alpha, which contains the SoHo and three SH3 domains and displays tissue-specific expression; and beta, which contains only the three SH3 domains and is widely expressed. Vinexin alpha stimulates the accumulation of F-actin at focal contact sites. Vinexin also promotes keratinocyte migration and wound healing. The SH3 domains of vinexin have been reported to bind a number of ligands including vinculin, WAVE2, DLG5, Abl, and Cbl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212857 cd11924, SH3_Vinexin_2, Second Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)

 Score = 38.0 bits (88), Expect = 5e-04
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 389 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISG--EVGSIPVPYVQ 439
           +A+Y F G+   +L F+K + + ++ K  E+W+  + I+G    G  P  YVQ
Sbjct: 4   VAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGR-ITGTGRQGIFPASYVQ 55

Vinexin is also called Sorbs3, SH3P3, and SH3-containing adapter molecule 1 (SCAM-1). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. Vinexin was first identified as a vinculin binding protein; it is co-localized with vinculin at cell-ECM and cell-cell adhesion sites. There are several splice variants of vinexin: alpha, which contains the SoHo and three SH3 domains and displays tissue-specific expression; and beta, which contains only the three SH3 domains and is widely expressed. Vinexin alpha stimulates the accumulation of F-actin at focal contact sites. Vinexin also promotes keratinocyte migration and wound healing. The SH3 domains of vinexin have been reported to bind a number of ligands including vinculin, WAVE2, DLG5, Abl, and Cbl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212731 cd11797, SH3_DNMBP_N4, Fourth N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 37.8 bits (88), Expect = 5e-04
 Identities = 16/39 (41%), Positives = 22/39 (56%)

Query: 218 AYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPF 256
           A +   L  E+GD I++  T  +G  EGEL G+ G FP 
Sbjct: 10  ALEPNELDFEVGDRIRIIATLEDGWLEGELKGRRGIFPH 48

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP bind the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212731 cd11797, SH3_DNMBP_N4, Fourth N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 37.8 bits (88), Expect = 5e-04
 Identities = 16/39 (41%), Positives = 22/39 (56%)

Query: 493 AYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPF 531
           A +   L  E+GD I++  T  +G  EGEL G+ G FP 
Sbjct: 10  ALEPNELDFEVGDRIRIIATLEDGWLEGELKGRRGIFPH 48

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP bind the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212771 cd11837, SH3_Intersectin_2, Second Src homology 3 domain (or SH3B) of Intersectin

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
              A Y +     + L F K DI+ V+ + E  WW  +   GE G  P  YV+
Sbjct: 1   TATALYPWRAKKENHLSFAKGDIITVLEQQEM-WWFGELEGGEEGWFPKSYVK 52

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The second SH3 domain (or SH3B) of ITSN1 has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212771 cd11837, SH3_Intersectin_2, Second Src homology 3 domain (or SH3B) of Intersectin

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
              A Y +     + L F K DI+ V+ + E  WW  +   GE G  P  YV+
Sbjct: 1   TATALYPWRAKKENHLSFAKGDIITVLEQQEM-WWFGELEGGEEGWFPKSYVK 52

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The second SH3 domain (or SH3B) of ITSN1 has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212899 cd11966, SH3_ASAP2, Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing protein 2

 Score = 38.0 bits (88), Expect = 5e-04
 Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 4/56 (7%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEV---GSIPVPYVQ 164
           +V A Y+   ++PD+L F + +I+IV  ++++ WW   +I GE    G+ PV +V 
Sbjct: 1   RVKALYNCVADNPDELTFSEGEIIIVDGEEDKEWWIG-HIDGEPTRRGAFPVSFVH 55

ASAP2 is also called DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. It mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and it binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212899 cd11966, SH3_ASAP2, Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing protein 2

 Score = 38.0 bits (88), Expect = 5e-04
 Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 4/56 (7%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEV---GSIPVPYVQ 439
           +V A Y+   ++PD+L F + +I+IV  ++++ WW   +I GE    G+ PV +V 
Sbjct: 1   RVKALYNCVADNPDELTFSEGEIIIVDGEEDKEWWIG-HIDGEPTRRGAFPVSFVH 55

ASAP2 is also called DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. It mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and it binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212762 cd11828, SH3_ARHGEF9_like, Src homology 3 domain of ARHGEF9-like Rho guanine nucleotide exchange factors

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
              A +D    DP++L FK  D++ V+   ++ WW    I  E G  P  +V+
Sbjct: 1   LAEALWDHVTMDPEELGFKAGDVIEVLDMSDKDWWWGS-IRDEEGWFPASFVR 52

Members of this family contain a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. They include the Rho guanine nucleotide exchange factors ARHGEF9, ASEF (also called ARHGEF4), ASEF2, and similar proteins. GEFs activate small GTPases by exchanging bound GDP for free GTP. ARHGEF9 specifically activates Cdc42, while both ASEF and ASEF2 can activate Rac1 and Cdc42. ARHGEF9 is highly expressed in the brain and it interacts with gephyrin, a postsynaptic protein associated with GABA and glycine receptors. ASEF plays a role in angiogenesis and cell migration. ASEF2 is important in cell migration and adhesion dynamics. ASEF exists in an autoinhibited form and is activated upon binding of the tumor suppressor APC (adenomatous polyposis coli), leading to the activation of Rac1 or Cdc42. In its autoinhibited form, the SH3 domain of ASEF forms an extensive interface with the DH and PH domains, blocking the Rac binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212762 cd11828, SH3_ARHGEF9_like, Src homology 3 domain of ARHGEF9-like Rho guanine nucleotide exchange factors

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
              A +D    DP++L FK  D++ V+   ++ WW    I  E G  P  +V+
Sbjct: 1   LAEALWDHVTMDPEELGFKAGDVIEVLDMSDKDWWWGS-IRDEEGWFPASFVR 52

Members of this family contain a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. They include the Rho guanine nucleotide exchange factors ARHGEF9, ASEF (also called ARHGEF4), ASEF2, and similar proteins. GEFs activate small GTPases by exchanging bound GDP for free GTP. ARHGEF9 specifically activates Cdc42, while both ASEF and ASEF2 can activate Rac1 and Cdc42. ARHGEF9 is highly expressed in the brain and it interacts with gephyrin, a postsynaptic protein associated with GABA and glycine receptors. ASEF plays a role in angiogenesis and cell migration. ASEF2 is important in cell migration and adhesion dynamics. ASEF exists in an autoinhibited form and is activated upon binding of the tumor suppressor APC (adenomatous polyposis coli), leading to the activation of Rac1 or Cdc42. In its autoinhibited form, the SH3 domain of ASEF forms an extensive interface with the DH and PH domains, blocking the Rac binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212813 cd11880, SH3_Caskin, Src Homology 3 domain of CASK interacting protein

 Score = 37.9 bits (88), Expect = 5e-04
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 6/50 (12%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGEL------NGKTGHFPFTHVE 260
           N +D TAL +  GDII V + + +G+W+G +      N + G+FP + VE
Sbjct: 11  NNHDLTALNVRAGDIITVLEQHPDGRWKGHIHDNQTGNDRVGYFPPSLVE 60

Caskin proteins are multidomain adaptor proteins that contain six ankyrin repeats, a single SH3 domain, tandem sterile alpha motif (SAM) domains, and a long disordered proline-rich region. There are two Caskin proteins called Caskin1 and Caskin2. Caskin1 binds to the multidomain scaffolding protein CASK through the CaM domain in competition with Munc-interacting protein 1 (Mint1). CASK participates in one of two evolutionarily conserved tripartite complexes containing either Mint1 and Velis or Caskin1 and Velis. Caskin1 may play a role in infantile myoclonic epilepsy. There is not much known about Caskin2; despite sharing a domain architecture with Caskin1, Caskin2 does not bind CASK. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 61

>gnl|CDD|212813 cd11880, SH3_Caskin, Src Homology 3 domain of CASK interacting protein

 Score = 37.9 bits (88), Expect = 5e-04
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 6/50 (12%)

Query: 492 NAYDKTALKLEIGDIIKVTKTNINGQWEGEL------NGKTGHFPFTHVE 535
           N +D TAL +  GDII V + + +G+W+G +      N + G+FP + VE
Sbjct: 11  NNHDLTALNVRAGDIITVLEQHPDGRWKGHIHDNQTGNDRVGYFPPSLVE 60

Caskin proteins are multidomain adaptor proteins that contain six ankyrin repeats, a single SH3 domain, tandem sterile alpha motif (SAM) domains, and a long disordered proline-rich region. There are two Caskin proteins called Caskin1 and Caskin2. Caskin1 binds to the multidomain scaffolding protein CASK through the CaM domain in competition with Munc-interacting protein 1 (Mint1). CASK participates in one of two evolutionarily conserved tripartite complexes containing either Mint1 and Velis or Caskin1 and Velis. Caskin1 may play a role in infantile myoclonic epilepsy. There is not much known about Caskin2; despite sharing a domain architecture with Caskin1, Caskin2 does not bind CASK. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 61

>gnl|CDD|212978 cd12045, SH3_SKAP2, Src Homology 3 domain of Src Kinase-Associated Phosphoprotein 2

 Score = 37.6 bits (87), Expect = 6e-04
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)

Query: 117 YDFDGNDPDDLPFKKNDILIVVSKDEEH--WWTAQNISGEVGSIPVPYV 163
           +D  G+ PD+L FK+ D + ++SK+     WW  + + G +G +P  Y+
Sbjct: 6   WDCTGDQPDELSFKRGDTIYILSKEYNRFGWWVGE-MKGTIGLVPKAYI 53

SKAP2, also called SKAP55-Related (SKAP55R) or SKAP55 homolog (SKAP-HOM or SKAP55-HOM), is an immune cell-specific adaptor protein that plays an important role in adhesion and migration of B-cells and macrophages. Binding partners include ADAP (adhesion and degranulation-promoting adaptor protein), YopH, SHPS1, and HPK1. SKAP2 has also been identified as a substrate for lymphoid-specific tyrosine phosphatase (Lyp), which has been implicated in a wide variety of autoimmune diseases. It contains a pleckstrin homology (PH) domain, a C-terminal SH3 domain, and several tyrosine phosphorylation sites. Like SKAP1, SKAP2 is expected to bind primarily to a proline-rich region of ADAP through its SH3 domain; its degradation may be regulated by ADAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212978 cd12045, SH3_SKAP2, Src Homology 3 domain of Src Kinase-Associated Phosphoprotein 2

 Score = 37.6 bits (87), Expect = 6e-04
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)

Query: 392 YDFDGNDPDDLPFKKNDILIVVSKDEEH--WWTAQNISGEVGSIPVPYV 438
           +D  G+ PD+L FK+ D + ++SK+     WW  + + G +G +P  Y+
Sbjct: 6   WDCTGDQPDELSFKRGDTIYILSKEYNRFGWWVGE-MKGTIGLVPKAYI 53

SKAP2, also called SKAP55-Related (SKAP55R) or SKAP55 homolog (SKAP-HOM or SKAP55-HOM), is an immune cell-specific adaptor protein that plays an important role in adhesion and migration of B-cells and macrophages. Binding partners include ADAP (adhesion and degranulation-promoting adaptor protein), YopH, SHPS1, and HPK1. SKAP2 has also been identified as a substrate for lymphoid-specific tyrosine phosphatase (Lyp), which has been implicated in a wide variety of autoimmune diseases. It contains a pleckstrin homology (PH) domain, a C-terminal SH3 domain, and several tyrosine phosphorylation sites. Like SKAP1, SKAP2 is expected to bind primarily to a proline-rich region of ADAP through its SH3 domain; its degradation may be regulated by ADAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|198285 cd10718, SH2_CIS, Src homology 2 (SH2) domain found in cytokine-inducible SH2-containing protein (CIS)

 Score = 38.6 bits (90), Expect = 6e-04
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 12/91 (13%)

Query: 9  DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI-- 66
            + WY+G +T  EA   L  +   G FLVRDS+       L VK     ++  I     
Sbjct: 2  RESGWYWGSITASEAHQALQ-KAPEGTFLVRDSSHPSYMLTLSVKTTRGPTNVRIEYSDG 60

Query: 67 -----TNTEQQTCYKIGDKTFSDLPSLLAFY 92
               +++  +        +F D+ SL+  Y
Sbjct: 61 SFRLDSSSLARPRL----LSFPDVVSLVQHY 87

CIS family members are known to be cytokine-inducible negative regulators of cytokine signaling. The expression of the CIS gene can be induced by IL2, IL3, GM-CSF and EPO in hematopoietic cells. Proteasome-mediated degradation of this protein has been shown to be involved in the inactivation of the erythropoietin receptor. Suppressor of cytokine signalling (SOCS) was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 88

>gnl|CDD|198285 cd10718, SH2_CIS, Src homology 2 (SH2) domain found in cytokine-inducible SH2-containing protein (CIS)

 Score = 38.6 bits (90), Expect = 6e-04
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 12/91 (13%)

Query: 284 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI-- 341
             + WY+G +T  EA   L  +   G FLVRDS+       L VK     ++  I     
Sbjct: 2   RESGWYWGSITASEAHQALQ-KAPEGTFLVRDSSHPSYMLTLSVKTTRGPTNVRIEYSDG 60

Query: 342 -----TNTEQQTCYKIGDKTFSDLPSLLAFY 367
                +++  +        +F D+ SL+  Y
Sbjct: 61  SFRLDSSSLARPRL----LSFPDVVSLVQHY 87

CIS family members are known to be cytokine-inducible negative regulators of cytokine signaling. The expression of the CIS gene can be induced by IL2, IL3, GM-CSF and EPO in hematopoietic cells. Proteasome-mediated degradation of this protein has been shown to be involved in the inactivation of the erythropoietin receptor. Suppressor of cytokine signalling (SOCS) was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 88

>gnl|CDD|212863 cd11930, SH3_SH3RF1_2, Second Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase

 Score = 37.7 bits (87), Expect = 6e-04
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 115 AKYDFDGNDP----DDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
           A YDF+  D     D LPF K+DIL V+ + +E+W     +  ++G  P+ YV
Sbjct: 4   ALYDFEVKDKEADKDCLPFAKDDILTVIRRVDENWAEGM-LGDKIGIFPISYV 55

SH3RF1 is also called POSH (Plenty of SH3s) or SH3MD2 (SH3 multiple domains protein 2). It is a scaffold protein that acts as an E3 ubiquitin-protein ligase. It plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF1 also enhances the ubiquitination of ROMK1 potassium channel resulting in its increased endocytosis. It contains an N-terminal RING finger domain and four SH3 domains. This model represents the second SH3 domain, located C-terminal of the first SH3 domain at the N-terminal half, of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212863 cd11930, SH3_SH3RF1_2, Second Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase

 Score = 37.7 bits (87), Expect = 6e-04
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 390 AKYDFDGNDP----DDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 438
           A YDF+  D     D LPF K+DIL V+ + +E+W     +  ++G  P+ YV
Sbjct: 4   ALYDFEVKDKEADKDCLPFAKDDILTVIRRVDENWAEGM-LGDKIGIFPISYV 55

SH3RF1 is also called POSH (Plenty of SH3s) or SH3MD2 (SH3 multiple domains protein 2). It is a scaffold protein that acts as an E3 ubiquitin-protein ligase. It plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF1 also enhances the ubiquitination of ROMK1 potassium channel resulting in its increased endocytosis. It contains an N-terminal RING finger domain and four SH3 domains. This model represents the second SH3 domain, located C-terminal of the first SH3 domain at the N-terminal half, of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212833 cd11900, SH3_Nck1_1, First Src Homology 3 domain of Nck1 adaptor protein

 Score = 37.8 bits (87), Expect = 7e-04
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           V+AK+D+      +L  KKN+ L ++  D + WW  +N   + G +P  YV++
Sbjct: 5   VVAKFDYVAQQDQELDIKKNERLWLLD-DSKSWWRVRNAMNKTGFVPSNYVER 56

Nck1 (also called Nckalpha) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds and activates RasGAP, resulting in the downregulation of Ras. It is also involved in the signaling of endothilin-mediated inhibition of cell migration. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The first SH3 domain of Nck1 binds the PxxDY sequence in the CD3e cytoplasmic tail; this binding inhibits phosphorylation by Src kinases, resulting in the downregulation of TCR surface expression. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212833 cd11900, SH3_Nck1_1, First Src Homology 3 domain of Nck1 adaptor protein

 Score = 37.8 bits (87), Expect = 7e-04
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 440
           V+AK+D+      +L  KKN+ L ++  D + WW  +N   + G +P  YV++
Sbjct: 5   VVAKFDYVAQQDQELDIKKNERLWLLD-DSKSWWRVRNAMNKTGFVPSNYVER 56

Nck1 (also called Nckalpha) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds and activates RasGAP, resulting in the downregulation of Ras. It is also involved in the signaling of endothilin-mediated inhibition of cell migration. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The first SH3 domain of Nck1 binds the PxxDY sequence in the CD3e cytoplasmic tail; this binding inhibits phosphorylation by Src kinases, resulting in the downregulation of TCR surface expression. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212911 cd11978, SH3_VAV3_2, C-terminal (or second) Src homology 3 domain of VAV3 protein

 Score = 37.3 bits (86), Expect = 8e-04
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           IA+YDF   D  +L   K D++ + +K   + W    ++G VG  P  YV++
Sbjct: 4   IARYDFCARDMRELSLLKGDVVKIYTKMSTNGWWRGEVNGRVGWFPSTYVEE 55

VAV3 is ubiquitously expressed and functions as a phosphorylation-dependent guanine nucleotide exchange factor (GEF) for RhoA, RhoG, and Rac1. It has been implicated to function in the hematopoietic, bone, cerebellar, and cardiovascular systems. VAV3 is essential in axon guidance in neurons that control blood pressure and respiration. It is overexpressed in prostate cancer cells and it plays a role in regulating androgen receptor transcriptional activity. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212911 cd11978, SH3_VAV3_2, C-terminal (or second) Src homology 3 domain of VAV3 protein

 Score = 37.3 bits (86), Expect = 8e-04
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 389 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 440
           IA+YDF   D  +L   K D++ + +K   + W    ++G VG  P  YV++
Sbjct: 4   IARYDFCARDMRELSLLKGDVVKIYTKMSTNGWWRGEVNGRVGWFPSTYVEE 55

VAV3 is ubiquitously expressed and functions as a phosphorylation-dependent guanine nucleotide exchange factor (GEF) for RhoA, RhoG, and Rac1. It has been implicated to function in the hematopoietic, bone, cerebellar, and cardiovascular systems. VAV3 is essential in axon guidance in neurons that control blood pressure and respiration. It is overexpressed in prostate cancer cells and it plays a role in regulating androgen receptor transcriptional activity. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212727 cd11793, SH3_ephexin1_like, Src homology 3 domain of ephexin-1-like SH3 domain containing Rho guanine nucleotide exchange factors

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 5/55 (9%)

Query: 212 QVRVPNAYDKT---ALKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVEF 261
           QV+  +AY       L LE GD++ V +   +G +EGE   +G+ G FP ++ E 
Sbjct: 1   QVQCVHAYTAQQPDELTLEEGDVVNVLRKMPDGWYEGERLRDGERGWFPSSYTEE 55

Members of this family contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and C-terminal SH3 domains. They include the Rho guanine nucleotide exchange factors ARHGEF5, ARHGEF16, ARHGEF19, ARHGEF26, ARHGEF27 (also called ephexin-1), and similar proteins, and are also called ephexins because they interact directly with ephrin A receptors. GEFs interact with Rho GTPases via their DH domains to catalyze nucleotide exchange by stabilizing the nucleotide-free GTPase intermediate. They play important roles in neuronal development. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212727 cd11793, SH3_ephexin1_like, Src homology 3 domain of ephexin-1-like SH3 domain containing Rho guanine nucleotide exchange factors

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 5/55 (9%)

Query: 487 QVRVPNAYDKT---ALKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVEF 536
           QV+  +AY       L LE GD++ V +   +G +EGE   +G+ G FP ++ E 
Sbjct: 1   QVQCVHAYTAQQPDELTLEEGDVVNVLRKMPDGWYEGERLRDGERGWFPSSYTEE 55

Members of this family contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and C-terminal SH3 domains. They include the Rho guanine nucleotide exchange factors ARHGEF5, ARHGEF16, ARHGEF19, ARHGEF26, ARHGEF27 (also called ephexin-1), and similar proteins, and are also called ephexins because they interact directly with ephrin A receptors. GEFs interact with Rho GTPases via their DH domains to catalyze nucleotide exchange by stabilizing the nucleotide-free GTPase intermediate. They play important roles in neuronal development. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212897 cd11964, SH3_STAM1, Src homology 3 domain of Signal Transducing Adaptor Molecule 1

 Score = 37.2 bits (86), Expect = 0.001
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
           KV A YDF+  + ++L FK  DI+ ++   + +WW  +   G  G  P  +V
Sbjct: 2   KVRAIYDFEAAEDNELTFKAGDIITILDDSDPNWWKGETPQG-TGLFPSNFV 52

STAM1 is part of the endosomal sorting complex required for transport (ESCRT-0) and is involved in sorting ubiquitinated cargo proteins from the endosome. It may also be involved in the regulation of IL2 and GM-CSF mediated signaling, and has been implicated in neural cell survival. STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212897 cd11964, SH3_STAM1, Src homology 3 domain of Signal Transducing Adaptor Molecule 1

 Score = 37.2 bits (86), Expect = 0.001
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 438
           KV A YDF+  + ++L FK  DI+ ++   + +WW  +   G  G  P  +V
Sbjct: 2   KVRAIYDFEAAEDNELTFKAGDIITILDDSDPNWWKGETPQG-TGLFPSNFV 52

STAM1 is part of the endosomal sorting complex required for transport (ESCRT-0) and is involved in sorting ubiquitinated cargo proteins from the endosome. It may also be involved in the regulation of IL2 and GM-CSF mediated signaling, and has been implicated in neural cell survival. STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212985 cd12052, SH3_CIN85_1, First Src Homology 3 domain (SH3A) of Cbl-interacting protein of 85 kDa

 Score = 36.8 bits (85), Expect = 0.001
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFP 255
           L + +GDII   K +  G WEGE+ G+ G FP
Sbjct: 16  LTITVGDIITKIKKDDGGWWEGEIKGRRGLFP 47

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the first SH3 domain (SH3A) of CIN85; SH3A binds to internal proline-rich motifs within the proline-rich region. This intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. SH3A has also been shown to bind ubiquitin and to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic end of the cell adhesion protein CD2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212985 cd12052, SH3_CIN85_1, First Src Homology 3 domain (SH3A) of Cbl-interacting protein of 85 kDa

 Score = 36.8 bits (85), Expect = 0.001
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 499 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFP 530
           L + +GDII   K +  G WEGE+ G+ G FP
Sbjct: 16  LTITVGDIITKIKKDDGGWWEGEIKGRRGLFP 47

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the first SH3 domain (SH3A) of CIN85; SH3A binds to internal proline-rich motifs within the proline-rich region. This intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. SH3A has also been shown to bind ubiquitin and to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic end of the cell adhesion protein CD2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212723 cd11789, SH3_Nebulin_family_C, C-terminal Src Homology 3 domain of the Nebulin family of proteins

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQK 165
           +  A YD+   D D++ F++ D++I V   ++ W       +G+ G +P  YV+ 
Sbjct: 1   RYRAMYDYAAADDDEVSFQEGDVIINVEIIDDGWMEGTVQRTGQSGMLPANYVEL 55

Nebulin family proteins contain multiple nebulin repeats, and may contain an N-terminal LIM domain and/or a C-terminal SH3 domain. They have molecular weights ranging from 34 to 900 kD, depending on the number of nebulin repeats, and they all bind actin. They are involved in the regulation of actin filament architecture and function as stabilizers and scaffolds for cytoskeletal structures with which they associate, such as long actin filaments or focal adhesions. Nebulin family proteins that contain a C-terminal SH3 domain include the giant filamentous protein nebulin, nebulette, Lasp1, and Lasp2. Lasp2, also called LIM-nebulette, is an alternatively spliced variant of nebulette. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212723 cd11789, SH3_Nebulin_family_C, C-terminal Src Homology 3 domain of the Nebulin family of proteins

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQK 440
           +  A YD+   D D++ F++ D++I V   ++ W       +G+ G +P  YV+ 
Sbjct: 1   RYRAMYDYAAADDDEVSFQEGDVIINVEIIDDGWMEGTVQRTGQSGMLPANYVEL 55

Nebulin family proteins contain multiple nebulin repeats, and may contain an N-terminal LIM domain and/or a C-terminal SH3 domain. They have molecular weights ranging from 34 to 900 kD, depending on the number of nebulin repeats, and they all bind actin. They are involved in the regulation of actin filament architecture and function as stabilizers and scaffolds for cytoskeletal structures with which they associate, such as long actin filaments or focal adhesions. Nebulin family proteins that contain a C-terminal SH3 domain include the giant filamentous protein nebulin, nebulette, Lasp1, and Lasp2. Lasp2, also called LIM-nebulette, is an alternatively spliced variant of nebulette. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|213006 cd12073, SH3_HS1, Src homology 3 domain of Hematopoietic lineage cell-specific protein 1

 Score = 36.7 bits (85), Expect = 0.001
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           +A YD+ G   D++ F   + +  +   +E WW      G  G  P  YV+
Sbjct: 4   VALYDYQGEGDDEISFDPQETITDIEMVDEGWWKGT-CHGHRGLFPANYVE 53

HS1, also called HCLS1 (hematopoietic cell-specific Lyn substrate 1), is a cortactin homolog expressed specifically in hematopoietic cells. It is an actin regulatory protein that binds the Arp2/3 complex and stabilizes branched actin filaments. It is required for cell spreading and signaling in lymphocytes. It regulates cytoskeletal remodeling that controls lymphocyte trafficking, and it also affects tissue invasion and infiltration of leukemic B cells. Like cortactin, HS1 contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region binds the Arp2/3 complex and F-actin, while the C-terminal region acts as an adaptor or scaffold that can connect varied proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|213006 cd12073, SH3_HS1, Src homology 3 domain of Hematopoietic lineage cell-specific protein 1

 Score = 36.7 bits (85), Expect = 0.001
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 389 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
           +A YD+ G   D++ F   + +  +   +E WW      G  G  P  YV+
Sbjct: 4   VALYDYQGEGDDEISFDPQETITDIEMVDEGWWKGT-CHGHRGLFPANYVE 53

HS1, also called HCLS1 (hematopoietic cell-specific Lyn substrate 1), is a cortactin homolog expressed specifically in hematopoietic cells. It is an actin regulatory protein that binds the Arp2/3 complex and stabilizes branched actin filaments. It is required for cell spreading and signaling in lymphocytes. It regulates cytoskeletal remodeling that controls lymphocyte trafficking, and it also affects tissue invasion and infiltration of leukemic B cells. Like cortactin, HS1 contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region binds the Arp2/3 complex and F-actin, while the C-terminal region acts as an adaptor or scaffold that can connect varied proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212996 cd12063, SH3_Caskin2, Src Homology 3 domain of CASK interacting protein 2

 Score = 36.9 bits (85), Expect = 0.001
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 6/52 (11%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGELN------GKTGHFPFTHVEFI 262
           N +D TAL +  GD+I V + + +G+W+G ++       + G+FP + VE I
Sbjct: 11  NLHDPTALNVRAGDVITVLEQHPDGRWKGHIHDSQRGTDRVGYFPPSIVEVI 62

Caskin2 is a multidomain adaptor protein that contains six ankyrin repeats, a single SH3 domain, tandem sterile alpha motif (SAM) domains, and a long disordered proline-rich region. It shares a domain architecture with Caskin1, but does not bind CASK. The function of Caskin2 is still unknown. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 62

>gnl|CDD|212996 cd12063, SH3_Caskin2, Src Homology 3 domain of CASK interacting protein 2

 Score = 36.9 bits (85), Expect = 0.001
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 6/52 (11%)

Query: 492 NAYDKTALKLEIGDIIKVTKTNINGQWEGELN------GKTGHFPFTHVEFI 537
           N +D TAL +  GD+I V + + +G+W+G ++       + G+FP + VE I
Sbjct: 11  NLHDPTALNVRAGDVITVLEQHPDGRWKGHIHDSQRGTDRVGYFPPSIVEVI 62

Caskin2 is a multidomain adaptor protein that contains six ankyrin repeats, a single SH3 domain, tandem sterile alpha motif (SAM) domains, and a long disordered proline-rich region. It shares a domain architecture with Caskin1, but does not bind CASK. The function of Caskin2 is still unknown. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 62

>gnl|CDD|212696 cd11762, SH3_FCHSD_2, Second Src Homology 3 domain of FCH and double SH3 domains proteins

 Score = 36.6 bits (85), Expect = 0.001
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)

Query: 229 GDIIKVTKTNIN----GQWEGELNGKTGHFPFTHVE 260
           G II++ + + N    G WEGE NG+ G FP   VE
Sbjct: 21  GAIIRILRKDDNGVDDGWWEGEFNGRVGVFPSLVVE 56

This group is composed of FCH and double SH3 domains protein 1 (FCHSD1) and FCHSD2. These proteins have a common domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. They have only been characterized in silico and their functions remain unknown. This group also includes the insect protein, nervous wreck, which acts as a regulator of synaptic growth signaling. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212696 cd11762, SH3_FCHSD_2, Second Src Homology 3 domain of FCH and double SH3 domains proteins

 Score = 36.6 bits (85), Expect = 0.001
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)

Query: 504 GDIIKVTKTNIN----GQWEGELNGKTGHFPFTHVE 535
           G II++ + + N    G WEGE NG+ G FP   VE
Sbjct: 21  GAIIRILRKDDNGVDDGWWEGEFNGRVGVFPSLVVE 56

This group is composed of FCH and double SH3 domains protein 1 (FCHSD1) and FCHSD2. These proteins have a common domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. They have only been characterized in silico and their functions remain unknown. This group also includes the insect protein, nervous wreck, which acts as a regulator of synaptic growth signaling. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212700 cd11766, SH3_Nck_2, Second Src Homology 3 domain of Nck adaptor proteins

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 15/37 (40%), Positives = 21/37 (56%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
           L L  GD + V + + +G W GE NG+ G FP  +V 
Sbjct: 16  LSLRKGDRVLVLEKSSDGWWRGECNGQVGWFPSNYVT 52

Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212700 cd11766, SH3_Nck_2, Second Src Homology 3 domain of Nck adaptor proteins

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 15/37 (40%), Positives = 21/37 (56%)

Query: 499 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 535
           L L  GD + V + + +G W GE NG+ G FP  +V 
Sbjct: 16  LSLRKGDRVLVLEKSSDGWWRGECNGQVGWFPSNYVT 52

Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212972 cd12039, SH3_MPP3, Src Homology 3 domain of Membrane Protein, Palmitoylated 3 (or MAGUK p55 subfamily member 3)

 Score = 36.5 bits (84), Expect = 0.002
 Identities = 14/25 (56%), Positives = 19/25 (76%)

Query: 127 LPFKKNDILIVVSKDEEHWWTAQNI 151
           LPFK+ DIL VVS+D+  WW A+ +
Sbjct: 23  LPFKRRDILEVVSQDDPTWWQAKRV 47

MPP3 is a scaffolding protein that colocalizes with MPP5 and CRB1 at the subdpical region adjacent to adherens junctions and may function in photoreceptor polarity. It interacts with some nectins and regulates their trafficking and processing. Nectins are cell-cell adhesion proteins involved in the establishment apical-basal polarity at cell adhesion sites. It is one of seven vertebrate homologs of the Drosophila Stardust protein, which is required in establishing cell polarity, and it contains two L27 domains followed by the core of three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212972 cd12039, SH3_MPP3, Src Homology 3 domain of Membrane Protein, Palmitoylated 3 (or MAGUK p55 subfamily member 3)

 Score = 36.5 bits (84), Expect = 0.002
 Identities = 14/25 (56%), Positives = 19/25 (76%)

Query: 402 LPFKKNDILIVVSKDEEHWWTAQNI 426
           LPFK+ DIL VVS+D+  WW A+ +
Sbjct: 23  LPFKRRDILEVVSQDDPTWWQAKRV 47

MPP3 is a scaffolding protein that colocalizes with MPP5 and CRB1 at the subdpical region adjacent to adherens junctions and may function in photoreceptor polarity. It interacts with some nectins and regulates their trafficking and processing. Nectins are cell-cell adhesion proteins involved in the establishment apical-basal polarity at cell adhesion sites. It is one of seven vertebrate homologs of the Drosophila Stardust protein, which is required in establishing cell polarity, and it contains two L27 domains followed by the core of three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212815 cd11882, SH3_GRAF-like, Src Homology 3 domain of GTPase Regulator Associated with Focal adhesion kinase and similar proteins

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 15/53 (28%), Positives = 23/53 (43%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           +  A Y     D  +L F+   I+  V   +E  W    ++G  G IP  YV+
Sbjct: 1   RARALYACKAEDESELSFEPGQIITNVQPSDEPGWLEGTLNGRTGLIPENYVE 53

This subfamily is composed of Rho GTPase activating proteins (GAPs) with similarity to GRAF. Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. Although vertebrates harbor four Rho GAPs in the GRAF subfamily including GRAF, GRAF2, GRAF3, and Oligophrenin-1 (OPHN1), only three are included in this model. OPHN1 contains the BAR, PH and GAP domains, but not the C-terminal SH3 domain. GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. GRAF influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase. GRAF2 regulates caspase-activated p21-activated protein kinase-2. The SH3 domain of GRAF and GRAF2 binds PKNbeta, a target of the small GTPase Rho. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 54

>gnl|CDD|212815 cd11882, SH3_GRAF-like, Src Homology 3 domain of GTPase Regulator Associated with Focal adhesion kinase and similar proteins

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 15/53 (28%), Positives = 23/53 (43%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
           +  A Y     D  +L F+   I+  V   +E  W    ++G  G IP  YV+
Sbjct: 1   RARALYACKAEDESELSFEPGQIITNVQPSDEPGWLEGTLNGRTGLIPENYVE 53

This subfamily is composed of Rho GTPase activating proteins (GAPs) with similarity to GRAF. Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. Although vertebrates harbor four Rho GAPs in the GRAF subfamily including GRAF, GRAF2, GRAF3, and Oligophrenin-1 (OPHN1), only three are included in this model. OPHN1 contains the BAR, PH and GAP domains, but not the C-terminal SH3 domain. GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. GRAF influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase. GRAF2 regulates caspase-activated p21-activated protein kinase-2. The SH3 domain of GRAF and GRAF2 binds PKNbeta, a target of the small GTPase Rho. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 54

>gnl|CDD|212815 cd11882, SH3_GRAF-like, Src Homology 3 domain of GTPase Regulator Associated with Focal adhesion kinase and similar proteins

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 218 AYDKTALKLEIGDIIK-VTKTNINGQWEGELNGKTGHFPFTHVEF 261
           A D++ L  E G II  V  ++  G  EG LNG+TG  P  +VEF
Sbjct: 10  AEDESELSFEPGQIITNVQPSDEPGWLEGTLNGRTGLIPENYVEF 54

This subfamily is composed of Rho GTPase activating proteins (GAPs) with similarity to GRAF. Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. Although vertebrates harbor four Rho GAPs in the GRAF subfamily including GRAF, GRAF2, GRAF3, and Oligophrenin-1 (OPHN1), only three are included in this model. OPHN1 contains the BAR, PH and GAP domains, but not the C-terminal SH3 domain. GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. GRAF influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase. GRAF2 regulates caspase-activated p21-activated protein kinase-2. The SH3 domain of GRAF and GRAF2 binds PKNbeta, a target of the small GTPase Rho. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 54

>gnl|CDD|212815 cd11882, SH3_GRAF-like, Src Homology 3 domain of GTPase Regulator Associated with Focal adhesion kinase and similar proteins

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 493 AYDKTALKLEIGDIIK-VTKTNINGQWEGELNGKTGHFPFTHVEF 536
           A D++ L  E G II  V  ++  G  EG LNG+TG  P  +VEF
Sbjct: 10  AEDESELSFEPGQIITNVQPSDEPGWLEGTLNGRTGLIPENYVEF 54

This subfamily is composed of Rho GTPase activating proteins (GAPs) with similarity to GRAF. Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. Although vertebrates harbor four Rho GAPs in the GRAF subfamily including GRAF, GRAF2, GRAF3, and Oligophrenin-1 (OPHN1), only three are included in this model. OPHN1 contains the BAR, PH and GAP domains, but not the C-terminal SH3 domain. GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. GRAF influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase. GRAF2 regulates caspase-activated p21-activated protein kinase-2. The SH3 domain of GRAF and GRAF2 binds PKNbeta, a target of the small GTPase Rho. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 54

>gnl|CDD|212925 cd11992, SH3_Intersectin2_3, Third Src homology 3 domain (or SH3C) of Intersectin-2

 Score = 36.1 bits (83), Expect = 0.002
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           IA Y +  ++P DL F + + ++V  KD E WWT   I    G  P  YV+
Sbjct: 3   IALYPYSSSEPGDLTFNEGEEILVTQKDGE-WWTGS-IEDRTGIFPSNYVR 51

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The third SH3 domain (SH3C) of ITSN2 has been shown to bind the K15 protein of Kaposi's sarcoma-associated herpesvirus. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212925 cd11992, SH3_Intersectin2_3, Third Src homology 3 domain (or SH3C) of Intersectin-2

 Score = 36.1 bits (83), Expect = 0.002
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 389 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
           IA Y +  ++P DL F + + ++V  KD E WWT   I    G  P  YV+
Sbjct: 3   IALYPYSSSEPGDLTFNEGEEILVTQKDGE-WWTGS-IEDRTGIFPSNYVR 51

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The third SH3 domain (SH3C) of ITSN2 has been shown to bind the K15 protein of Kaposi's sarcoma-associated herpesvirus. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212885 cd11952, SH3_iASPP, Src Homology 3 (SH3) domain of Inhibitor of ASPP protein (iASPP)

 Score = 36.1 bits (83), Expect = 0.002
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVPY 162
           V A +D+    PD+L FK+ D++ V+ KD     WW A ++ G  G +P  Y
Sbjct: 3   VYALWDYSAEFPDELSFKEGDMVTVLRKDGEGTDWWWA-SLCGREGYVPRNY 53

iASPP, also called RelA-associated inhibitor (RAI), is an oncoprotein that inhibits the apoptotic transactivation potential of p53. It is upregulated in human breast cancers expressing wild-type p53, in acute leukemias regardless of the p53 mutation status, as well as in ovarian cancer where it is associated with poor patient outcome and chemoresistance. iASPP is also a binding partner and negative regulator of p65RelA, which promotes cell proliferation and inhibits apoptosis; p65RelA has the opposite effect on cell growth compared to the p53 family. It contains a proline-rich region, four ankyrin (ANK) repeats, and an SH3 domain at its C-terminal half. The SH3 domain and the ANK repeats of iASPP contribute to the p53 binding site; they bind to the DNA binding domain of p53. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212885 cd11952, SH3_iASPP, Src Homology 3 (SH3) domain of Inhibitor of ASPP protein (iASPP)

 Score = 36.1 bits (83), Expect = 0.002
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVPY 437
           V A +D+    PD+L FK+ D++ V+ KD     WW A ++ G  G +P  Y
Sbjct: 3   VYALWDYSAEFPDELSFKEGDMVTVLRKDGEGTDWWWA-SLCGREGYVPRNY 53

iASPP, also called RelA-associated inhibitor (RAI), is an oncoprotein that inhibits the apoptotic transactivation potential of p53. It is upregulated in human breast cancers expressing wild-type p53, in acute leukemias regardless of the p53 mutation status, as well as in ovarian cancer where it is associated with poor patient outcome and chemoresistance. iASPP is also a binding partner and negative regulator of p65RelA, which promotes cell proliferation and inhibits apoptosis; p65RelA has the opposite effect on cell growth compared to the p53 family. It contains a proline-rich region, four ankyrin (ANK) repeats, and an SH3 domain at its C-terminal half. The SH3 domain and the ANK repeats of iASPP contribute to the p53 binding site; they bind to the DNA binding domain of p53. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|198234 cd10371, SH2_Src_Blk, Src homology 2 (SH2) domain found in B lymphoid kinase (Blk)

 Score = 37.3 bits (86), Expect = 0.002
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 8/85 (9%)

Query: 13 WYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCVK----ENNKVSHYIINKIT 67
          W+F  ++R++A+  LL+  +  G+FL+R+S +  G + L VK    +   V HY   KI 
Sbjct: 5  WFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDVTTQGEVVKHY---KIR 61

Query: 68 NTEQQTCYKIGDKTFSDLPSLLAFY 92
          + +    Y     TF  L +L+  Y
Sbjct: 62 SLDNGGYYISPRITFPTLQALVQHY 86

Blk is a member of the Src non-receptor type tyrosine kinase family of proteins. Blk is expressed in the B-cells. Unlike most other Src members Blk lacks cysteine residues in the SH4 domain that undergo palmitylation. Blk is required for the development of IL-17-producing gamma-delta T cells. Furthermore, Blk is expressed in lymphoid precursors and, in this capacity, plays a role in regulating thymus cellularity during ontogeny. Blk has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 100

>gnl|CDD|198234 cd10371, SH2_Src_Blk, Src homology 2 (SH2) domain found in B lymphoid kinase (Blk)

 Score = 37.3 bits (86), Expect = 0.002
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 8/85 (9%)

Query: 288 WYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCVK----ENNKVSHYIINKIT 342
           W+F  ++R++A+  LL+  +  G+FL+R+S +  G + L VK    +   V HY   KI 
Sbjct: 5   WFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDVTTQGEVVKHY---KIR 61

Query: 343 NTEQQTCYKIGDKTFSDLPSLLAFY 367
           + +    Y     TF  L +L+  Y
Sbjct: 62  SLDNGGYYISPRITFPTLQALVQHY 86

Blk is a member of the Src non-receptor type tyrosine kinase family of proteins. Blk is expressed in the B-cells. Unlike most other Src members Blk lacks cysteine residues in the SH4 domain that undergo palmitylation. Blk is required for the development of IL-17-producing gamma-delta T cells. Furthermore, Blk is expressed in lymphoid precursors and, in this capacity, plays a role in regulating thymus cellularity during ontogeny. Blk has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 100

>gnl|CDD|212775 cd11841, SH3_SH3YL1_like, Src homology 3 domain of SH3 domain containing Ysc84-like 1 (SH3YL1) protein

 Score = 35.8 bits (83), Expect = 0.003
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 224 LKLEIGDIIKV-TKTNI-NGQWEGELNGKTGHFPFTHV 259
           L  + GD I V T+T+     WEG L G+ G FP  +V
Sbjct: 16  LSFQAGDRITVLTRTDSQFDWWEGRLRGRVGIFPANYV 53

SH3YL1 localizes to the plasma membrane and is required for dorsal ruffle formation. It binds phosphoinositides (PIs) with high affinity through its N-terminal SYLF domain (also called DUF500). In addition, SH3YL1 contains a C-terminal SH3 domain which has been reported to bind to N-WASP, dynamin 2, and SHIP2 (a PI 5-phosphatase). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212775 cd11841, SH3_SH3YL1_like, Src homology 3 domain of SH3 domain containing Ysc84-like 1 (SH3YL1) protein

 Score = 35.8 bits (83), Expect = 0.003
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 499 LKLEIGDIIKV-TKTNI-NGQWEGELNGKTGHFPFTHV 534
           L  + GD I V T+T+     WEG L G+ G FP  +V
Sbjct: 16  LSFQAGDRITVLTRTDSQFDWWEGRLRGRVGIFPANYV 53

SH3YL1 localizes to the plasma membrane and is required for dorsal ruffle formation. It binds phosphoinositides (PIs) with high affinity through its N-terminal SYLF domain (also called DUF500). In addition, SH3YL1 contains a C-terminal SH3 domain which has been reported to bind to N-WASP, dynamin 2, and SHIP2 (a PI 5-phosphatase). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212993 cd12060, SH3_alphaPIX, Src Homology 3 domain of alpha-Pak Interactive eXchange factor

 Score = 35.7 bits (82), Expect = 0.003
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 166
           V A+++F   + D+L   K DI+ V   +E  WW    ++G+ G  P  YV++ 
Sbjct: 4   VKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEG-TLNGKTGWFPSNYVREI 56

Alpha-PIX, also called Rho guanine nucleotide exchange factor 6 (ARHGEF6) or Cool (Cloned out of Library)-2, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and is localized in dendritic spines where it regulates spine morphogenesis. It controls dendritic length and spine density in the hippocampus. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212993 cd12060, SH3_alphaPIX, Src Homology 3 domain of alpha-Pak Interactive eXchange factor

 Score = 35.7 bits (82), Expect = 0.003
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 441
           V A+++F   + D+L   K DI+ V   +E  WW    ++G+ G  P  YV++ 
Sbjct: 4   VKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEG-TLNGKTGWFPSNYVREI 56

Alpha-PIX, also called Rho guanine nucleotide exchange factor 6 (ARHGEF6) or Cool (Cloned out of Library)-2, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and is localized in dendritic spines where it regulates spine morphogenesis. It controls dendritic length and spine density in the hippocampus. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212808 cd11875, SH3_CD2AP-like_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein and similar proteins

 Score = 35.8 bits (83), Expect = 0.003
 Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 3/45 (6%)

Query: 117 YDFDGNDPDDLPFKKNDILIVVSKDEEH--WWTAQNISGEVGSIP 159
           +D++  + D+L  ++ DI+ ++SKD E   WW  + ++G+ G  P
Sbjct: 6   FDYEAENEDELTLREGDIVTILSKDCEDKGWWKGE-LNGKRGVFP 49

This subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212808 cd11875, SH3_CD2AP-like_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein and similar proteins

 Score = 35.8 bits (83), Expect = 0.003
 Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 3/45 (6%)

Query: 392 YDFDGNDPDDLPFKKNDILIVVSKDEEH--WWTAQNISGEVGSIP 434
           +D++  + D+L  ++ DI+ ++SKD E   WW  + ++G+ G  P
Sbjct: 6   FDYEAENEDELTLREGDIVTILSKDCEDKGWWKGE-LNGKRGVFP 49

This subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212715 cd11781, SH3_Sorbs_1, First Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 2/44 (4%)

Query: 218 AYDKTALKLEIGDIIKVTKTNINGQW-EGELNGKTGHFPFTHVE 260
           A     L L+ GDII + +  I+  W EGE NG+ G FP ++VE
Sbjct: 10  AQSAKELSLKKGDIIYIRR-QIDKNWYEGEHNGRVGIFPASYVE 52

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the first SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212715 cd11781, SH3_Sorbs_1, First Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 2/44 (4%)

Query: 493 AYDKTALKLEIGDIIKVTKTNINGQW-EGELNGKTGHFPFTHVE 535
           A     L L+ GDII + +  I+  W EGE NG+ G FP ++VE
Sbjct: 10  AQSAKELSLKKGDIIYIRR-QIDKNWYEGEHNGRVGIFPASYVE 52

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the first SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212905 cd11972, SH3_Abi2, Src homology 3 domain of Abl Interactor 2

 Score = 36.1 bits (83), Expect = 0.003
 Identities = 19/39 (48%), Positives = 24/39 (61%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
           L  + G II V K N +G +EG +NG TG FP  +VE I
Sbjct: 19  LSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVESI 57

Abi2 is highly expressed in the brain and eye. It regulates actin cytoskeletal reorganization at adherens junctions and dendritic spines, which is important in cell morphogenesis, migration, and cognitive function. Mice deficient with Abi2 show defects in orientation and migration of lens fibers, neuronal migration, dendritic spine morphology, as well as deficits in learning and memory. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212905 cd11972, SH3_Abi2, Src homology 3 domain of Abl Interactor 2

 Score = 36.1 bits (83), Expect = 0.003
 Identities = 19/39 (48%), Positives = 24/39 (61%)

Query: 499 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 537
           L  + G II V K N +G +EG +NG TG FP  +VE I
Sbjct: 19  LSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVESI 57

Abi2 is highly expressed in the brain and eye. It regulates actin cytoskeletal reorganization at adherens junctions and dendritic spines, which is important in cell morphogenesis, migration, and cognitive function. Mice deficient with Abi2 show defects in orientation and migration of lens fibers, neuronal migration, dendritic spine morphology, as well as deficits in learning and memory. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212977 cd12044, SH3_SKAP1, Src Homology 3 domain of Src Kinase-Associated Phosphoprotein 1

 Score = 36.0 bits (83), Expect = 0.003
 Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 3/49 (6%)

Query: 117 YDFDGNDPDDLPFKKNDILIVVSKDEEH--WWTAQNISGEVGSIPVPYV 163
           +D  G++PD+L F++ D++ ++SK+     WW  + ++G VG +P  Y+
Sbjct: 6   WDCFGDNPDELSFQRGDLIYILSKEYNMYGWWVGE-LNGIVGIVPKDYL 53

SKAP1, also called SKAP55 (Src kinase-associated protein of 55kDa), is an immune cell-specific adaptor protein that plays an important role in T-cell adhesion, migration, and integrin clustering. It is expressed exclusively in T-lymphocytes, mast cells, and macrophages. Binding partners include ADAP (adhesion and degranulation-promoting adaptor protein), Fyn, Riam, RapL, and RasGRP. It contains a pleckstrin homology (PH) domain, a C-terminal SH3 domain, and several tyrosine phosphorylation sites. The SH3 domain of SKAP1 is necessary for its ability to regulate T-cell conjugation with antigen-presenting cells and the formation of LFA-1 clusters. SKAP1 binds primarily to a proline-rich region of ADAP through its SH3 domain; its degradation is regulated by ADAP. A secondary interaction occurs via the ADAP SH3 domain and the RKxxYxxY motif in SKAP1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212977 cd12044, SH3_SKAP1, Src Homology 3 domain of Src Kinase-Associated Phosphoprotein 1

 Score = 36.0 bits (83), Expect = 0.003
 Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 3/49 (6%)

Query: 392 YDFDGNDPDDLPFKKNDILIVVSKDEEH--WWTAQNISGEVGSIPVPYV 438
           +D  G++PD+L F++ D++ ++SK+     WW  + ++G VG +P  Y+
Sbjct: 6   WDCFGDNPDELSFQRGDLIYILSKEYNMYGWWVGE-LNGIVGIVPKDYL 53

SKAP1, also called SKAP55 (Src kinase-associated protein of 55kDa), is an immune cell-specific adaptor protein that plays an important role in T-cell adhesion, migration, and integrin clustering. It is expressed exclusively in T-lymphocytes, mast cells, and macrophages. Binding partners include ADAP (adhesion and degranulation-promoting adaptor protein), Fyn, Riam, RapL, and RasGRP. It contains a pleckstrin homology (PH) domain, a C-terminal SH3 domain, and several tyrosine phosphorylation sites. The SH3 domain of SKAP1 is necessary for its ability to regulate T-cell conjugation with antigen-presenting cells and the formation of LFA-1 clusters. SKAP1 binds primarily to a proline-rich region of ADAP through its SH3 domain; its degradation is regulated by ADAP. A secondary interaction occurs via the ADAP SH3 domain and the RKxxYxxY motif in SKAP1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212719 cd11785, SH3_SH3RF_C, C-terminal (Fourth) Src Homology 3 domain of SH3 domain containing ring finger 1 (SH3RF1), SH3RF3, and similar domains

 Score = 35.9 bits (83), Expect = 0.003
 Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 2/39 (5%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVE 260
           L+L+ GDI+ V K   +G ++G L   GKTG FP + VE
Sbjct: 16  LELKEGDIVFVHKKREDGWFKGTLQRTGKTGLFPGSFVE 54

SH3RF1 (or POSH) and SH3RF3 (or POSH2) are scaffold proteins that function as E3 ubiquitin-protein ligases. They contain an N-terminal RING finger domain and four SH3 domains. This model represents the fourth SH3 domain, located at the C-terminus of SH3RF1 and SH3RF3, and similar domains. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212719 cd11785, SH3_SH3RF_C, C-terminal (Fourth) Src Homology 3 domain of SH3 domain containing ring finger 1 (SH3RF1), SH3RF3, and similar domains

 Score = 35.9 bits (83), Expect = 0.003
 Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 2/39 (5%)

Query: 499 LKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVE 535
           L+L+ GDI+ V K   +G ++G L   GKTG FP + VE
Sbjct: 16  LELKEGDIVFVHKKREDGWFKGTLQRTGKTGLFPGSFVE 54

SH3RF1 (or POSH) and SH3RF3 (or POSH2) are scaffold proteins that function as E3 ubiquitin-protein ligases. They contain an N-terminal RING finger domain and four SH3 domains. This model represents the fourth SH3 domain, located at the C-terminus of SH3RF1 and SH3RF3, and similar domains. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|198262 cd10399, SH2_Tec_Bmx, Src homology 2 (SH2) domain found in Tec protein, Bmx

 Score = 37.2 bits (86), Expect = 0.003
 Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 9  DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNY---VLCVKENNK---VSHYI 62
          D   W+ G ++R +++ +L  +   GAF+VR+S+ + G Y   +     N+K   V HY 
Sbjct: 4  DAYDWFAGNISRSQSEQLLRQKGKEGAFMVRNSSQV-GMYTVSLFSKAVNDKKGTVKHYH 62

Query: 63 INKITNTEQQTCYKIGDKTFSDLPSLLAFYK 93
          ++  TN E +  Y   +  F  +P L+ +++
Sbjct: 63 VH--TNAENKL-YLAENYCFDSIPKLIHYHQ 90

A member of the Tec protein tyrosine kinase Bmx is expressed in the endothelium of large arteries, fetal endocardium, adult endocardium of the left ventricle, bone marrow, lung, testis, granulocytes, myeloid cell lines, and prostate cell lines. Bmx is involved in the regulation of Rho and serum response factor (SRF). Bmx has been shown to interact with PAK1, PTK2, PTPN21, and RUFY1. Most of the Tec family members have a PH domain (Txk and the short (type 1) splice variant of Drosophila Btk29A are exceptions), a Tec homology (TH) domain, a SH3 domain, a SH2 domain, and a protein kinase catalytic domain. The TH domain consists of a Zn2+-binding Btk motif and a proline-rich region. The Btk motif is found in Tec kinases, Ras GAP, and IGBP. It is crucial for the function of Tec PH domains. It is not present in Txk and the type 1 splice form of the Drosophila homolog. The proline-rich regions are highly conserved for the most part with the exception of Bmx whose residues surrounding the PXXP motif are not conserved (TH-like) and Btk29A which is entirely unique with large numbers of glycine residues (TH-extended). Tec family members all lack a C-terminal tyrosine having an autoinhibitory function in its phosphorylated state. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 106

>gnl|CDD|198262 cd10399, SH2_Tec_Bmx, Src homology 2 (SH2) domain found in Tec protein, Bmx

 Score = 37.2 bits (86), Expect = 0.003
 Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 284 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNY---VLCVKENNK---VSHYI 337
           D   W+ G ++R +++ +L  +   GAF+VR+S+ + G Y   +     N+K   V HY 
Sbjct: 4   DAYDWFAGNISRSQSEQLLRQKGKEGAFMVRNSSQV-GMYTVSLFSKAVNDKKGTVKHYH 62

Query: 338 INKITNTEQQTCYKIGDKTFSDLPSLLAFYK 368
           ++  TN E +  Y   +  F  +P L+ +++
Sbjct: 63  VH--TNAENKL-YLAENYCFDSIPKLIHYHQ 90

A member of the Tec protein tyrosine kinase Bmx is expressed in the endothelium of large arteries, fetal endocardium, adult endocardium of the left ventricle, bone marrow, lung, testis, granulocytes, myeloid cell lines, and prostate cell lines. Bmx is involved in the regulation of Rho and serum response factor (SRF). Bmx has been shown to interact with PAK1, PTK2, PTPN21, and RUFY1. Most of the Tec family members have a PH domain (Txk and the short (type 1) splice variant of Drosophila Btk29A are exceptions), a Tec homology (TH) domain, a SH3 domain, a SH2 domain, and a protein kinase catalytic domain. The TH domain consists of a Zn2+-binding Btk motif and a proline-rich region. The Btk motif is found in Tec kinases, Ras GAP, and IGBP. It is crucial for the function of Tec PH domains. It is not present in Txk and the type 1 splice form of the Drosophila homolog. The proline-rich regions are highly conserved for the most part with the exception of Bmx whose residues surrounding the PXXP motif are not conserved (TH-like) and Btk29A which is entirely unique with large numbers of glycine residues (TH-extended). Tec family members all lack a C-terminal tyrosine having an autoinhibitory function in its phosphorylated state. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 106

>gnl|CDD|212767 cd11833, SH3_Stac_1, First C-terminal Src homology 3 domain of SH3 and cysteine-rich domain-containing (Stac) proteins

 Score = 35.6 bits (82), Expect = 0.003
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           +A Y F   + +DL  +  D + ++    E WW  + I   VG  P  +VQ+
Sbjct: 3   VALYKFKPQENEDLEMRPGDKITLLDDSNEDWWKGK-IEDRVGFFPANFVQR 53

Stac proteins are putative adaptor proteins that contain a cysteine-rich C1 domain and one or two SH3 domains at the C-terminus. There are three mammalian members (Stac1, Stac2, and Stac3) of this family. Stac1 and Stac3 contain two SH3 domains while Stac2 contains a single SH3 domain at the C-terminus. This model represents the first C-terminal SH3 domain of Stac1 and Stac3, and the single C-terminal SH3 domain of Stac2. Stac1 and Stac2 have been found to be expressed differently in mature dorsal root ganglia (DRG) neurons. Stac1 is mainly expressed in peptidergic neurons while Stac2 is found in a subset of nonpeptidergic and all trkB+ neurons. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212767 cd11833, SH3_Stac_1, First C-terminal Src homology 3 domain of SH3 and cysteine-rich domain-containing (Stac) proteins

 Score = 35.6 bits (82), Expect = 0.003
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 389 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 440
           +A Y F   + +DL  +  D + ++    E WW  + I   VG  P  +VQ+
Sbjct: 3   VALYKFKPQENEDLEMRPGDKITLLDDSNEDWWKGK-IEDRVGFFPANFVQR 53

Stac proteins are putative adaptor proteins that contain a cysteine-rich C1 domain and one or two SH3 domains at the C-terminus. There are three mammalian members (Stac1, Stac2, and Stac3) of this family. Stac1 and Stac3 contain two SH3 domains while Stac2 contains a single SH3 domain at the C-terminus. This model represents the first C-terminal SH3 domain of Stac1 and Stac3, and the single C-terminal SH3 domain of Stac2. Stac1 and Stac2 have been found to be expressed differently in mature dorsal root ganglia (DRG) neurons. Stac1 is mainly expressed in peptidergic neurons while Stac2 is found in a subset of nonpeptidergic and all trkB+ neurons. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212986 cd12053, SH3_CD2AP_1, First Src Homology 3 domain (SH3A) of CD2-associated protein

 Score = 36.0 bits (83), Expect = 0.003
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 217 NAYDKTALKLEIGDIIK-VTKTNINGQWEGELNGKTGHFP 255
           +A  +  L + +G+II+ V K    G  EGELNG+ G FP
Sbjct: 9   DAVHEDELTIRVGEIIRNVKKLEEEGWLEGELNGRRGMFP 48

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the first SH3 domain (SH3A) of CD2AP. SH3A binds to the PXXXPR motif present in c-Cbl and the cytoplasmic domain of cell adhesion protein CD2. Its interaction with CD2 anchors CD2 at sites of cell contact. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212986 cd12053, SH3_CD2AP_1, First Src Homology 3 domain (SH3A) of CD2-associated protein

 Score = 36.0 bits (83), Expect = 0.003
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 492 NAYDKTALKLEIGDIIK-VTKTNINGQWEGELNGKTGHFP 530
           +A  +  L + +G+II+ V K    G  EGELNG+ G FP
Sbjct: 9   DAVHEDELTIRVGEIIRNVKKLEEEGWLEGELNGRRGMFP 48

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the first SH3 domain (SH3A) of CD2AP. SH3A binds to the PXXXPR motif present in c-Cbl and the cytoplasmic domain of cell adhesion protein CD2. Its interaction with CD2 anchors CD2 at sites of cell contact. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212790 cd11856, SH3_p47phox_like, Src homology 3 domains of the p47phox subunit of NADPH oxidase and similar domains

 Score = 35.7 bits (83), Expect = 0.003
 Identities = 10/52 (19%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           +A  D++    D++  ++ +++ V+ K++  WW  +    + G +P  Y++ 
Sbjct: 3   VAIADYEAQGDDEISLQEGEVVEVLEKNDSGWWYVR-KGDKEGWVPASYLEP 53

This family is composed of the tandem SH3 domains of p47phox subunit of NADPH oxidase and Nox Organizing protein 1 (NoxO1), the four SH3 domains of Tks4 (Tyr kinase substrate with four SH3 domains), the five SH3 domains of Tks5, the SH3 domain of obscurin, Myosin-I, and similar domains. Most members of this group also contain Phox homology (PX) domains, except for obscurin and Myosin-I. p47phox and NoxO1 are regulators of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) and nonphagocytic NADPH oxidase Nox1, respectively. They play roles in the activation of their respective NADPH oxidase, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Obscurin is a giant muscle protein that plays important roles in the organization and assembly of the myofibril and the sarcoplasmic reticulum. Type I myosins (Myosin-I) are actin-dependent motors in endocytic actin structures and actin patches. They play roles in membrane traffic in endocytic and secretory pathways, cell motility, and mechanosensing. Myosin-I contains an N-terminal actin-activated ATPase, a phospholipid-binding TH1 (tail homology 1) domain, and a C-terminal extension which includes an F-actin-binding TH2 domain, an SH3 domain, and an acidic peptide that participates in activating the Arp2/3complex. The SH3 domain of myosin-I is required for myosin-I-induced actin polymerization. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212790 cd11856, SH3_p47phox_like, Src homology 3 domains of the p47phox subunit of NADPH oxidase and similar domains

 Score = 35.7 bits (83), Expect = 0.003
 Identities = 10/52 (19%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 389 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 440
           +A  D++    D++  ++ +++ V+ K++  WW  +    + G +P  Y++ 
Sbjct: 3   VAIADYEAQGDDEISLQEGEVVEVLEKNDSGWWYVR-KGDKEGWVPASYLEP 53

This family is composed of the tandem SH3 domains of p47phox subunit of NADPH oxidase and Nox Organizing protein 1 (NoxO1), the four SH3 domains of Tks4 (Tyr kinase substrate with four SH3 domains), the five SH3 domains of Tks5, the SH3 domain of obscurin, Myosin-I, and similar domains. Most members of this group also contain Phox homology (PX) domains, except for obscurin and Myosin-I. p47phox and NoxO1 are regulators of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) and nonphagocytic NADPH oxidase Nox1, respectively. They play roles in the activation of their respective NADPH oxidase, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Obscurin is a giant muscle protein that plays important roles in the organization and assembly of the myofibril and the sarcoplasmic reticulum. Type I myosins (Myosin-I) are actin-dependent motors in endocytic actin structures and actin patches. They play roles in membrane traffic in endocytic and secretory pathways, cell motility, and mechanosensing. Myosin-I contains an N-terminal actin-activated ATPase, a phospholipid-binding TH1 (tail homology 1) domain, and a C-terminal extension which includes an F-actin-binding TH2 domain, an SH3 domain, and an acidic peptide that participates in activating the Arp2/3complex. The SH3 domain of myosin-I is required for myosin-I-induced actin polymerization. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212862 cd11929, SH3_SH3RF2_1, First Src Homology 3 domain of SH3 domain containing ring finger 2

 Score = 35.7 bits (82), Expect = 0.003
 Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           A  ++ G++P DL F K D++++  + +E+W+  + I+G  G  P   V+
Sbjct: 5   ALCNYRGHNPGDLKFNKGDVILLRRQLDENWYLGE-INGVSGIFPASSVE 53

SH3RF2 is also called POSHER (POSH-eliminating RING protein) or HEPP1 (heart protein phosphatase 1-binding protein). It acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1 (or POSH), a scaffold protein that is required for pro-apoptotic JNK activation. It may also play a role in cardiac functions together with protein phosphatase 1. SH3RF2 contains an N-terminal RING finger domain and three SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212862 cd11929, SH3_SH3RF2_1, First Src Homology 3 domain of SH3 domain containing ring finger 2

 Score = 35.7 bits (82), Expect = 0.003
 Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 390 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
           A  ++ G++P DL F K D++++  + +E+W+  + I+G  G  P   V+
Sbjct: 5   ALCNYRGHNPGDLKFNKGDVILLRRQLDENWYLGE-INGVSGIFPASSVE 53

SH3RF2 is also called POSHER (POSH-eliminating RING protein) or HEPP1 (heart protein phosphatase 1-binding protein). It acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1 (or POSH), a scaffold protein that is required for pro-apoptotic JNK activation. It may also play a role in cardiac functions together with protein phosphatase 1. SH3RF2 contains an N-terminal RING finger domain and three SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212819 cd11886, SH3_BOI, Src Homology 3 domain of fungal BOI-like proteins

 Score = 35.8 bits (83), Expect = 0.003
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH---WWTAQN-ISGEVGSIPVPY 162
           +I  +DF+    D+L  K  D + ++  DEE    W+  +N  +GE G  PV +
Sbjct: 2   LIVIHDFNARSEDELTLKPGDKIELIEDDEEFGDGWYLGRNLRTGETGLFPVVF 55

This subfamily includes the Saccharomyces cerevisiae proteins BOI1 and BOI2, and similar proteins. They contain an N-terminal SH3 domain, a Sterile alpha motif (SAM), and a Pleckstrin homology (PH) domain at the C-terminus. BOI1 and BOI2 interact with the SH3 domain of Bem1p, a protein involved in bud formation. They promote polarized cell growth and participates in the NoCut signaling pathway, which is involved in the control of cytokinesis. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 55

>gnl|CDD|212819 cd11886, SH3_BOI, Src Homology 3 domain of fungal BOI-like proteins

 Score = 35.8 bits (83), Expect = 0.003
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH---WWTAQN-ISGEVGSIPVPY 437
           +I  +DF+    D+L  K  D + ++  DEE    W+  +N  +GE G  PV +
Sbjct: 2   LIVIHDFNARSEDELTLKPGDKIELIEDDEEFGDGWYLGRNLRTGETGLFPVVF 55

This subfamily includes the Saccharomyces cerevisiae proteins BOI1 and BOI2, and similar proteins. They contain an N-terminal SH3 domain, a Sterile alpha motif (SAM), and a Pleckstrin homology (PH) domain at the C-terminus. BOI1 and BOI2 interact with the SH3 domain of Bem1p, a protein involved in bud formation. They promote polarized cell growth and participates in the NoCut signaling pathway, which is involved in the control of cytokinesis. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 55

>gnl|CDD|212705 cd11771, SH3_Pex13p_fungal, Src Homology 3 domain of fungal peroxisomal membrane protein Pex13p

 Score = 35.3 bits (82), Expect = 0.004
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 7/60 (11%)

Query: 207 FARVKQVRVPNAYDKTALKLEIGDIIKV-TKTNINGQ----WEGEL-NGKTGHFPFTHVE 260
           F R      P    +  L L+ GDI+ V +KT+  G+    W+G   +G+ G FP  +VE
Sbjct: 1   FCRALYDFTPEN-PEMELSLKKGDIVAVLSKTDPLGRDSEWWKGRTRDGRIGWFPSNYVE 59

Pex13p, located in the peroxisomal membrane, contains two transmembrane regions and a C-terminal SH3 domain. It binds to the peroxisomal targeting type I (PTS1) receptor Pex5p and the docking factor Pex14p through its SH3 domain. It is essential for both PTS1 and PTS2 protein import pathways into the peroxisomal matrix. Pex13p binds Pex14p, which contains a PxxP motif, in a classical fashion to the proline-rich ligand binding site of its SH3 domain. It binds the WxxxF/Y motif of Pex5p in a novel site that does not compete with Pex14p binding. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 60

>gnl|CDD|212705 cd11771, SH3_Pex13p_fungal, Src Homology 3 domain of fungal peroxisomal membrane protein Pex13p

 Score = 35.3 bits (82), Expect = 0.004
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 7/60 (11%)

Query: 482 FARVKQVRVPNAYDKTALKLEIGDIIKV-TKTNINGQ----WEGEL-NGKTGHFPFTHVE 535
           F R      P    +  L L+ GDI+ V +KT+  G+    W+G   +G+ G FP  +VE
Sbjct: 1   FCRALYDFTPEN-PEMELSLKKGDIVAVLSKTDPLGRDSEWWKGRTRDGRIGWFPSNYVE 59

Pex13p, located in the peroxisomal membrane, contains two transmembrane regions and a C-terminal SH3 domain. It binds to the peroxisomal targeting type I (PTS1) receptor Pex5p and the docking factor Pex14p through its SH3 domain. It is essential for both PTS1 and PTS2 protein import pathways into the peroxisomal matrix. Pex13p binds Pex14p, which contains a PxxP motif, in a classical fashion to the proline-rich ligand binding site of its SH3 domain. It binds the WxxxF/Y motif of Pex5p in a novel site that does not compete with Pex14p binding. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 60

>gnl|CDD|212770 cd11836, SH3_Intersectin_1, First Src homology 3 domain (or SH3A) of Intersectin

 Score = 35.4 bits (82), Expect = 0.004
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDE-EHWWTAQNISGEVGSIPVPYVQK 165
           A Y F+  +PD++ F+  DI+ V      E  W A  + G+ G  P  YV+K
Sbjct: 4   ALYAFEARNPDEISFQPGDIIQVDESQVAEPGWLAGELKGKTGWFPANYVEK 55

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The first SH3 domain (or SH3A) of ITSN1 has been shown to bind many proteins including Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212770 cd11836, SH3_Intersectin_1, First Src homology 3 domain (or SH3A) of Intersectin

 Score = 35.4 bits (82), Expect = 0.004
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 390 AKYDFDGNDPDDLPFKKNDILIVVSKDE-EHWWTAQNISGEVGSIPVPYVQK 440
           A Y F+  +PD++ F+  DI+ V      E  W A  + G+ G  P  YV+K
Sbjct: 4   ALYAFEARNPDEISFQPGDIIQVDESQVAEPGWLAGELKGKTGWFPANYVEK 55

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The first SH3 domain (or SH3A) of ITSN1 has been shown to bind many proteins including Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212820 cd11887, SH3_Bbc1, Src Homology 3 domain of Bbc1 and similar domains

 Score = 35.8 bits (83), Expect = 0.004
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI--SGEV--GSIPVPYVQK 165
           KV A Y ++ +  DDL F    ++ V  +++  W+  + +  +G    G  P  +V+ 
Sbjct: 3   KVKALYPYESDHEDDLNFDVGQLITVTEEEDADWYFGEYVDSNGNTKEGIFPKNFVEV 60

This subfamily is composed of Saccharomyces cerevisiae Bbc1p, also called Mti1p (Myosin tail region-interacting protein), and similar proteins. Bbc1p interacts with and regulates type I myosins in yeast, Myo3p and Myo5p, which are involved in actin cytoskeletal reorganization. It also binds and inhibits Las17, a WASp family protein that functions as an activator of the Arp2/3 complex. Bbc1p contains an N-terminal SH3 domain. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 60

>gnl|CDD|212820 cd11887, SH3_Bbc1, Src Homology 3 domain of Bbc1 and similar domains

 Score = 35.8 bits (83), Expect = 0.004
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI--SGEV--GSIPVPYVQK 440
           KV A Y ++ +  DDL F    ++ V  +++  W+  + +  +G    G  P  +V+ 
Sbjct: 3   KVKALYPYESDHEDDLNFDVGQLITVTEEEDADWYFGEYVDSNGNTKEGIFPKNFVEV 60

This subfamily is composed of Saccharomyces cerevisiae Bbc1p, also called Mti1p (Myosin tail region-interacting protein), and similar proteins. Bbc1p interacts with and regulates type I myosins in yeast, Myo3p and Myo5p, which are involved in actin cytoskeletal reorganization. It also binds and inhibits Las17, a WASp family protein that functions as an activator of the Arp2/3 complex. Bbc1p contains an N-terminal SH3 domain. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 60

>gnl|CDD|212967 cd12034, SH3_MPP4, Src Homology 3 domain of Membrane Protein, Palmitoylated 4 (or MAGUK p55 subfamily member 4)

 Score = 35.6 bits (82), Expect = 0.004
 Identities = 12/26 (46%), Positives = 19/26 (73%)

Query: 127 LPFKKNDILIVVSKDEEHWWTAQNIS 152
           LPF+K DIL +V +++  WW A+ +S
Sbjct: 23  LPFRKGDILQIVDQNDSLWWQARKLS 48

MPP4, also called Disks Large homolog 6 (DLG6) or Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 5 protein (ALS2CR5), is a retina-specific scaffolding protein that plays a role in organizing presynaptic protein complexes in the photoreceptor synapse, where it localizes to the plasma membrane. It is required in the proper localization of calcium ATPases and for maintenance of calcium homeostasis. MPP4 is one of seven vertebrate homologs of the Drosophila Stardust protein, which is required in establishing cell polarity, and it contains two L27 domains followed by the core of three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212967 cd12034, SH3_MPP4, Src Homology 3 domain of Membrane Protein, Palmitoylated 4 (or MAGUK p55 subfamily member 4)

 Score = 35.6 bits (82), Expect = 0.004
 Identities = 12/26 (46%), Positives = 19/26 (73%)

Query: 402 LPFKKNDILIVVSKDEEHWWTAQNIS 427
           LPF+K DIL +V +++  WW A+ +S
Sbjct: 23  LPFRKGDILQIVDQNDSLWWQARKLS 48

MPP4, also called Disks Large homolog 6 (DLG6) or Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 5 protein (ALS2CR5), is a retina-specific scaffolding protein that plays a role in organizing presynaptic protein complexes in the photoreceptor synapse, where it localizes to the plasma membrane. It is required in the proper localization of calcium ATPases and for maintenance of calcium homeostasis. MPP4 is one of seven vertebrate homologs of the Drosophila Stardust protein, which is required in establishing cell polarity, and it contains two L27 domains followed by the core of three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212991 cd12058, SH3_MLK4, Src Homology 3 domain of Mixed Lineage Kinase 4

 Score = 35.3 bits (81), Expect = 0.004
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 6/54 (11%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKD-----EEHWWTAQNISGEVGSIPVPYV 163
           A YD++ +  D+L  ++ D++ V+S+D     ++ WW  + I   +G  P  YV
Sbjct: 4   ALYDYEASGEDELSLRRGDVVEVLSQDAAVSGDDGWWAGK-IRHRLGIFPANYV 56

MLK4 is a Serine/Threonine Kinase (STK), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. The specific function of MLK4 is yet to be determined. Mutations in the kinase domain of MLK4 have been detected in colorectal cancers. MLK4 contains an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212991 cd12058, SH3_MLK4, Src Homology 3 domain of Mixed Lineage Kinase 4

 Score = 35.3 bits (81), Expect = 0.004
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 6/54 (11%)

Query: 390 AKYDFDGNDPDDLPFKKNDILIVVSKD-----EEHWWTAQNISGEVGSIPVPYV 438
           A YD++ +  D+L  ++ D++ V+S+D     ++ WW  + I   +G  P  YV
Sbjct: 4   ALYDYEASGEDELSLRRGDVVEVLSQDAAVSGDDGWWAGK-IRHRLGIFPANYV 56

MLK4 is a Serine/Threonine Kinase (STK), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. The specific function of MLK4 is yet to be determined. Mutations in the kinase domain of MLK4 have been detected in colorectal cancers. MLK4 contains an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	563
KOG4792|consensus	293		100.0
KOG4792|consensus	293		100.0
KOG1029|consensus	1118		100.0
KOG1264|consensus	1267		100.0
KOG4226|consensus	379		100.0
KOG4348|consensus	627		99.97
KOG4226|consensus	379		99.97
KOG4348|consensus	627		99.97
KOG4225|consensus	489		99.97
KOG1029|consensus	1118		99.96
KOG2996|consensus	865		99.96
KOG4225|consensus	489		99.95
KOG1264|consensus	1267		99.93
KOG0790|consensus	600		99.93
KOG2996|consensus	865		99.92
KOG3601|consensus	222		99.91
KOG4637|consensus	464		99.91
KOG3601|consensus	222		99.83
smart00252	84	SH2 Src homology 2 domains. Src homology 2 domains	99.81
KOG4278|consensus	1157		99.8
PF00017	77	SH2: SH2 domain; InterPro: IPR000980 The Src homol	99.79
cd00173	94	SH2 Src homology 2 domains; Signal transduction, i	99.79
KOG0197|consensus	468		99.65
KOG0790|consensus	600		99.6
KOG4278|consensus	1157		99.59
PF00017	77	SH2: SH2 domain; InterPro: IPR000980 The Src homol	99.5
PF14604	49	SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3	99.49
smart00252	84	SH2 Src homology 2 domains. Src homology 2 domains	99.49
PF14604	49	SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3	99.48
cd00173	94	SH2 Src homology 2 domains; Signal transduction, i	99.45
KOG0197|consensus	468		99.41
PF07653	55	SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3	99.4
PF07653	55	SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3	99.37
KOG3632|consensus	1335		99.34
KOG4637|consensus	464		99.3
PF00018	48	SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Ho	99.21
KOG0194|consensus	474		99.19
KOG2070|consensus	661		99.19
KOG1118|consensus	366		99.15
PF00018	48	SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Ho	99.11
smart00326	58	SH3 Src homology 3 domains. Src homology 3 (SH3) d	99.09
cd00174	54	SH3 Src homology 3 domains; SH3 domains bind to pr	99.08
KOG3632|consensus	1335		99.05
KOG2199|consensus	462		99.03
KOG1930|consensus	483		99.02
KOG2070|consensus	661		99.02
smart00326	58	SH3 Src homology 3 domains. Src homology 3 (SH3) d	99.0
KOG2199|consensus	462		99.0
KOG0162|consensus	1106		98.98
cd00174	54	SH3 Src homology 3 domains; SH3 domains bind to pr	98.95
KOG1118|consensus	366		98.88
KOG0162|consensus	1106		98.71
KOG2856|consensus	472		98.69
KOG2546|consensus	483		98.67
PF14633	220	SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_	98.54
KOG2546|consensus	483		98.47
KOG2856|consensus	472		98.45
KOG3751|consensus	622		98.35
KOG3655|consensus	484		98.29
KOG3875|consensus	362		98.29
KOG3655|consensus	484		98.2
KOG3875|consensus	362		98.2
KOG0515|consensus	752		98.2
KOG0515|consensus	752		98.19
KOG1930|consensus	483		98.17
KOG1702|consensus	264		98.08
KOG1843|consensus	473		98.04
KOG2222|consensus	848		98.03
KOG1702|consensus	264		98.02
KOG3697|consensus	345		98.0
KOG1843|consensus	473		98.0
KOG3523|consensus	695		97.85
KOG0194|consensus	474		97.84
KOG4773|consensus	386		97.79
KOG2528|consensus	490		97.73
KOG3725|consensus	375		97.66
KOG3523|consensus	695		97.58
KOG2222|consensus	848		97.43
KOG1856|consensus	1299		97.37
KOG4566|consensus	258		97.14
KOG4773|consensus	386		97.12
KOG3557|consensus	721		96.83
KOG1451|consensus	812		96.79
KOG3775|consensus	482		96.79
KOG0609|consensus	542		96.71
KOG2528|consensus	490		96.71
KOG3775|consensus	482		96.61
KOG4429|consensus	421		96.6
KOG3771|consensus	460		96.59
KOG3725|consensus	375		96.55
KOG1451|consensus	812		96.55
KOG4575|consensus	874		96.54
KOG3751|consensus	622		96.52
KOG4575|consensus	874		96.47
KOG4429|consensus	421		96.32
KOG0609|consensus	542		96.29
KOG3557|consensus	721		96.05
PF14633	220	SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_	95.89
KOG3771|consensus	460		95.77
PF14603	89	hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.	95.28
KOG0199|consensus	1039		94.96
PF08239	55	SH3_3: Bacterial SH3 domain; InterPro: IPR013247 S	94.95
PF08239	55	SH3_3: Bacterial SH3 domain; InterPro: IPR013247 S	94.92
PF14603	89	hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.	94.56
KOG3565|consensus	640		94.46
KOG1856|consensus	1299		94.44
KOG0199|consensus	1039		94.43
KOG3697|consensus	345		94.11
KOG4384|consensus	361		94.04
COG3103	205	SH3 domain protein [Signal transduction mechanisms	93.53
smart00287	63	SH3b Bacterial SH3 domain homologues.	93.28
smart00287	63	SH3b Bacterial SH3 domain homologues.	93.25
COG3103	205	SH3 domain protein [Signal transduction mechanisms	93.0
KOG3508|consensus	932		91.33
PF06347	55	SH3_4: Bacterial SH3 domain; InterPro: IPR010466 S	91.2
KOG3565|consensus	640		91.12
PRK10884	206	SH3 domain-containing protein; Provisional	90.86
PRK10884	206	SH3 domain-containing protein; Provisional	89.88
PF06347	55	SH3_4: Bacterial SH3 domain; InterPro: IPR010466 S	88.88
KOG3812|consensus	475		86.97
KOG3705|consensus	580		86.35
KOG0040|consensus	2399		84.12
PF02762	86	Cbl_N3: CBL proto-oncogene N-terminus, SH2-like do	83.81
KOG0040|consensus	2399		83.71

>KOG4792|consensus

Probab=100.00  E-value=3.2e-45  Score=324.99  Aligned_cols=264  Identities=55%  Similarity=0.945  Sum_probs=220.9

Q ss_pred             CCCCCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCC-cc--eEEEe
Q psy10852          1 MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTE-QQ--TCYKI   77 (563)
Q Consensus         1 ~~~~~~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~-~~--~~~~~   77 (563)
                      |++++|..+...||+|.|||++|.++|...+ .|.||||+|++.+|+|+|||+.+.+|.||.|....... +.  ..|.|
T Consensus         1 ~~~~FD~~er~swYfg~mSRqeA~~lL~~~r-~G~FLvRDSst~pGdYvLsV~E~srVshYiIn~~~p~~~~~~~~~~rI   79 (293)
T KOG4792|consen    1 MAGNFDSSERSSWYFGPMSRQEAVALLQGQR-HGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSPPSPAQPPPSRLRI   79 (293)
T ss_pred             CCCccChhhccceecCcccHHHHHHHhcCcc-eeeEEEecCCCCCCceEEEEecCcceeeeeecCCCCCccCCCcceeee
Confidence            7899999999999999999999999998877 49999999999999999999999999999999733221 11  15999


Q ss_pred             CCceecChHhhHHhhhcccCCCccccccccccc------------eeeeecccCCCCCCCCCcCCCCCEEEEEEecCCCe
Q psy10852         78 GDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTI------------EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHW  145 (563)
Q Consensus        78 ~~~~F~sl~~Li~~y~~~~~~~~~L~~p~~~~~------------~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~w  145 (563)
                      ++..|++|+.|++||+.|-|..+.|..|+.+..            +.++++|||.+...++|.|++|+++.|++|.++.|
T Consensus        80 gdQ~Fd~lPaLL~fykihyLdtttLi~p~~r~~~~~~~~~~~~~~~~vr~~fdF~G~deeDLPFkkGeiL~I~~K~eeqW  159 (293)
T KOG4792|consen   80 GDQEFDSLPALLEFYKIHYLDTTTLIEPAKRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGEILRIRDKPEEQW  159 (293)
T ss_pred             ccccccchHHHHhheeEeeeccccccccccccccccCcccchhhhhheeeeeccCCCccccCCcccCcEEEEecCcHHHh
Confidence            999999999999999999999999999988743            34677999999999999999999999999999999


Q ss_pred             eEEeeCCCeeeEEecCceeeccccccccc-c------cccccC-CCCCCCCCCCCCccccccccccCccceeeeeccccC
Q psy10852        146 WTAQNISGEVGSIPVPYVQKYSEGMSILS-L------RNLHLD-SSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPN  217 (563)
Q Consensus       146 w~g~~~~g~~G~fP~~yv~~~~~~~~~~~-~------~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  217 (563)
                      |.++|..|++|++|.+||++..+...... +      .+.... |.....+....+...+....+++|++++|+++..|+
T Consensus       160 W~Arns~Gk~GmIPvpYVe~~~~~~~~~~~~~~ga~e~si~q~~~g~e~~s~a~~s~~~~l~l~~~lPa~Arv~q~RVPn  239 (293)
T KOG4792|consen  160 WNARNSEGKRGMIPVPYVEKYRPASASVSALIGGASESSIPQSGGGAERFSSASTSSDTPLPLQQNLPAYARVIQKRVPN  239 (293)
T ss_pred             hhhhccCCcccceechHHHhhhhhhcccccccCCcccccCCCCCCCCCCCCCCCcccCCcCccccCCChheeeehhcCCC
Confidence            99999999999999999998876542110 0      000000 111111222222333334567889999999999999


Q ss_pred             CCCCCceeeccCCEEEEeeecCCCceeeeeCCceeeccccceeecCCC
Q psy10852        218 AYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN  265 (563)
Q Consensus       218 a~~~~eLsf~~Gd~v~V~~~~~~~W~~g~~~g~~G~~P~~~ve~~~~~  265 (563)
                      |++...|.+++||+|.|.++..+|-|+|+++|+.|.||.++|+..+.+
T Consensus       240 AYDkTaL~levGdiVkVTk~ninGqwegElnGk~G~fPfThvrf~d~~  287 (293)
T KOG4792|consen  240 AYDKTALALEVGDIVKVTKKNINGQWEGELNGKIGHFPFTHVRFTDVQ  287 (293)
T ss_pred             ccChhhhhhhcCcEEEEEeeccCceeeeeecCccccccceeEEeeccC
Confidence            999999999999999999999999999999999999999999998754

>KOG4792|consensus

Probab=100.00  E-value=3.3e-43  Score=312.19  Aligned_cols=267  Identities=54%  Similarity=0.924  Sum_probs=221.3

Q ss_pred             cCCCCCCCCCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeec-CCCcc--eeEEeC
Q psy10852        277 TGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKIT-NTEQQ--TCYKIG  353 (563)
Q Consensus       277 ~~~~~~~~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~-~~~~~--~~~~i~  353 (563)
                      ++.+|+.+...||+|.|+|++|..+|..++ .|.||||+|.+.||+|+|+++.+.+|.||.|.... +..+.  .+|.|+
T Consensus         2 ~~~FD~~er~swYfg~mSRqeA~~lL~~~r-~G~FLvRDSst~pGdYvLsV~E~srVshYiIn~~~p~~~~~~~~~~rIg   80 (293)
T KOG4792|consen    2 AGNFDSSERSSWYFGPMSRQEAVALLQGQR-HGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSPPSPAQPPPSRLRIG   80 (293)
T ss_pred             CCccChhhccceecCcccHHHHHHHhcCcc-eeeEEEecCCCCCCceEEEEecCcceeeeeecCCCCCccCCCcceeeec
Confidence            356788889999999999999999999877 59999999999999999999999999999998832 21111  149999


Q ss_pred             CcccCChhhHHhhhhcccCCCCccccccccc------------eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcE
Q psy10852        354 DKTFSDLPSLLAFYKVHYLDTSPLIKPATKT------------IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWW  421 (563)
Q Consensus       354 ~~~f~sl~~lv~~y~~~~~~~~~l~~P~~~~------------~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~  421 (563)
                      ++.|++|+.|++||+.+-|++++|..|+++.            ..+++++|||.+...++|-|++|+++.++++.++.||
T Consensus        81 dQ~Fd~lPaLL~fykihyLdtttLi~p~~r~~~~~~~~~~~~~~~~vr~~fdF~G~deeDLPFkkGeiL~I~~K~eeqWW  160 (293)
T KOG4792|consen   81 DQEFDSLPALLEFYKIHYLDTTTLIEPAKRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGEILRIRDKPEEQWW  160 (293)
T ss_pred             cccccchHHHHhheeEeeeccccccccccccccccCcccchhhhhheeeeeccCCCccccCCcccCcEEEEecCcHHHhh
Confidence            9999999999999999999999999998762            3467789999999999999999999999999999999


Q ss_pred             EEEecCCcEEEEcCCCeEeccCCcccc-ccc----ccCC-CCCCCCC--CCCCCCcccccccccccccceEEeecCCCCC
Q psy10852        422 TAQNISGEVGSIPVPYVQKYSEGMSIL-SLR----NLHL-DSSSHHV--PQQQTTPVRKTHLEVKLPAFARVKQVRVPNA  493 (563)
Q Consensus       422 ~~~~~~g~~G~~P~~~v~~~~~~~~~~-~~~----~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~  493 (563)
                      .+++..|+.|++|.+||+......+.. .+.    .++. ++..+..  +....+...+..+.+..|.+|+|+++..|+|
T Consensus       161 ~Arns~Gk~GmIPvpYVe~~~~~~~~~~~~~~ga~e~si~q~~~g~e~~s~a~~s~~~~l~l~~~lPa~Arv~q~RVPnA  240 (293)
T KOG4792|consen  161 NARNSEGKRGMIPVPYVEKYRPASASVSALIGGASESSIPQSGGGAERFSSASTSSDTPLPLQQNLPAYARVIQKRVPNA  240 (293)
T ss_pred             hhhccCCcccceechHHHhhhhhhcccccccCCcccccCCCCCCCCCCCCCCCcccCCcCccccCCChheeeehhcCCCc
Confidence            999999999999999999877653111 110    0111 1111111  1111222233445667899999999999999


Q ss_pred             CCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCCCCCC
Q psy10852        494 YDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSV  544 (563)
Q Consensus       494 ~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~~~~~  544 (563)
                      ++...|.+++||+|.|.+++.+|-|+|+++|+.|.||..||+.++.+++.+
T Consensus       241 YDkTaL~levGdiVkVTk~ninGqwegElnGk~G~fPfThvrf~d~~~~de  291 (293)
T KOG4792|consen  241 YDKTALALEVGDIVKVTKKNINGQWEGELNGKIGHFPFTHVRFTDVQNPDE  291 (293)
T ss_pred             cChhhhhhhcCcEEEEEeeccCceeeeeecCccccccceeEEeeccCCcCc
Confidence            999999999999999999999999999999999999999999999887764

>KOG1029|consensus

Probab=100.00  E-value=2e-42  Score=353.58  Aligned_cols=375  Identities=22%  Similarity=0.327  Sum_probs=228.5

Q ss_pred             ceeeeecccCCCCCCCCCcCCCCCEEEEEEec--CCCeeEEeeCCCeeeEEecCceeecccccccc---cccccccCCCC
Q psy10852        110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVPYVQKYSEGMSIL---SLRNLHLDSSS  184 (563)
Q Consensus       110 ~~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~--~~~ww~g~~~~g~~G~fP~~yv~~~~~~~~~~---~~~~~~~~g~~  184 (563)
                      ...|+|+|.|++++.+||+|..||||.|.+..  .++|..| .++|++||||.|||+++.....+.   |+.++....+.
T Consensus       693 ~vkyrAly~FeaRs~dEisf~pGDII~V~esq~aEPGWlaG-el~gktGWFPenyvEki~~~e~p~~v~Pv~~l~~~~~p  771 (1118)
T KOG1029|consen  693 TVKYRALYPFEARSHDEISFEPGDIIIVFESQAAEPGWLAG-ELRGKTGWFPENYVEKIPAVETPGGVPPVQNLPPTMTP  771 (1118)
T ss_pred             eEEEeeecccccCCcccccccCCCEEEEehhccCCcccccc-eeccccCcCcHHHHhhcccCCCCCCCCchhcCCCCCCc
Confidence            56699999999999999999999999998865  3566666 599999999999999876543221   11111111000


Q ss_pred             CCCCCCCC----------------CccccccccccCc-----cceeeeeccccCCCCCCceeeccCCEEEEeeecCCCce
Q psy10852        185 HHVPQQQT----------------TPVRKTHLEVKLP-----AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQW  243 (563)
Q Consensus       185 ~~~~~~~~----------------~~~~~~~~~~~~p-----~~~~~~~~~~~~a~~~~eLsf~~Gd~v~V~~~~~~~W~  243 (563)
                      ..++++..                .+..++  .-..|     ...++++.|...+..+..|+|.+||+|+|+++.+ .||
T Consensus       772 sas~nq~a~~ad~~~~~~n~~~~t~~aA~p--~~tapg~~eve~lq~iA~y~wrakke~dLsFskgd~I~Vlekqe-mwW  848 (1118)
T KOG1029|consen  772 SASVNQIAVVADTKNESANAMGLTEGAAPP--ALTAPGQGEVEILQAIALYPWRAKKENDLSFSKGDTITVLEKQE-MWW  848 (1118)
T ss_pred             ccccccceeecccccchhhccCCCCCCCCc--cccCCCchhhhhhhHHhhccccccccccccccCCCeeeeehhcc-cee
Confidence            00001100                000000  00111     1234556677789999999999999999999875 599


Q ss_pred             eeeeCCceeeccccceeecCCCCC-----CCCCC-CCCccCCCCCCCCCCccccccCHHHHHHHHhcCCCCCcEEEE--e
Q psy10852        244 EGELNGKTGHFPFTHVEFIPTNET-----MPFHS-SMKMTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVR--D  315 (563)
Q Consensus       244 ~g~~~g~~G~~P~~~ve~~~~~~~-----~p~~~-~~~~~~~~~~~~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR--~  315 (563)
                      +|...|..||||.+||+.+.....     .++.+ ....+....         ...+.. |...   ..+...|.+-  .
T Consensus       849 ~G~v~g~~GwFPksYVk~~~~~t~st~~~~s~es~sae~p~~~~---------~~a~~t-aa~v---~~qeq~ya~~~~~  915 (1118)
T KOG1029|consen  849 FGEVAGEIGWFPKSYVKEVGAITGSTTKIESPESLSAEAPGAAA---------SDATPT-AAPV---APQEQLYAVYPYF  915 (1118)
T ss_pred             cccccCccCcCcHHhhhhccccccccccccCcccccccCccccc---------cccCcc-cccc---cccceeEEEeccc
Confidence            999999999999999996553111     00000 000000000         000000 0000   0000111111  1


Q ss_pred             cCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeCC--cccCChhhHHhhhhccc----CCCCccccccccceeeEE
Q psy10852        316 SNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD--KTFSDLPSLLAFYKVHY----LDTSPLIKPATKTIEKVI  389 (563)
Q Consensus       316 S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~~--~~f~sl~~lv~~y~~~~----~~~~~l~~P~~~~~~~~~  389 (563)
                      +....+++.+.  .++.   ..+... ++ .+|.-.+++  ..|++     +||...-    ..+.+-.-|.++..+.+.
T Consensus       916 e~vEq~dlt~~--egd~---iLvtek-dg-eww~gt~~~r~gifPa-----n~y~r~~~q~gs~Tp~k~g~~~kkpeiAq  983 (1118)
T KOG1029|consen  916 EAVEQGDLTFH--EGDE---ILVTEK-DG-EWWTGTCGDREGIFPA-----NYYVRPKDQEGSGTPPKQGPTPKKPEIAQ  983 (1118)
T ss_pred             ccccCCCcccc--ccce---EEEeec-cC-ceeccccCCccccccc-----cceeeehhccCCCCCCCCCCCCCCchhhh
Confidence            11112222111  1110   111111 11 122122222  56775     4443221    122223345556678899


Q ss_pred             EeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEec-C---CcEEEEcCCCeEeccCCcccccccccCCCCCCCCCCCC
Q psy10852        390 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-S---GEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQ  465 (563)
Q Consensus       390 a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~-~---g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (563)
                      ++-+|.+..++.|++..|++|.|..+.+.|||.|+.. +   .+.||||++||+.+.+++...+           +..+ 
T Consensus       984 Via~yvAs~peQLsla~GqlIlIrkKn~sGWWeGELqarGkkrq~GWFPa~yVKvL~~~s~raT-----------Pa~~- 1051 (1118)
T KOG1029|consen  984 VIADYVASGPEQLSLAPGQLILIRKKNASGWWEGELQARGKKRQIGWFPAEYVKVLEPGSGRAT-----------PATR- 1051 (1118)
T ss_pred             hhhhhhccCchhccccCccEEEEEecCCCccchhhHhhcCCccccccccHHHhhhccCCCCcCC-----------CCCC-
Confidence            9999999999999999999999999999999999632 3   3679999999998887622111           0000 


Q ss_pred             CCCcccccccccccccceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceE-EcCCC
Q psy10852        466 QTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE-FIPTN  540 (563)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~-~~~~~  540 (563)
                                   .-+.+.++|||.  |+++|||+|++||+|.|+.+.+.+||.|+++|+.|+||+|||. ...+.
T Consensus      1052 -------------~v~qviamYdY~--AqndDELsF~kgdiI~VlnkdepeWW~Ge~ng~sGLFPSNYV~k~ttd~ 1112 (1118)
T KOG1029|consen 1052 -------------PVCQVIAMYDYE--AQNDDELSFKKGDIINVLNKDEPEWWSGERNGKSGLFPSNYVQKQTTDG 1112 (1118)
T ss_pred             -------------ccceeEEeeccc--cCCcccccccCCCEEEecCCCChhhhcccccCccccCccccccccccCC
Confidence                         012345566666  8889999999999999999999999999999999999999994 44443

>KOG1264|consensus

Probab=100.00  E-value=1.6e-40  Score=341.36  Aligned_cols=260  Identities=28%  Similarity=0.545  Sum_probs=217.6

Q ss_pred             CCCCCCccccCCC-HHHHHHHHcC-----CCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEe-CC
Q psy10852          7 PHDRNSWYFGMMT-RQEAQAILLS-----EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKI-GD   79 (563)
Q Consensus         7 ~~~~~~w~~g~i~-r~~ae~~L~~-----~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~-~~   79 (563)
                      -|..+.||||.+- |.+|+++|..     ++.||+||||+|++..|+|+||+.++|+|.|++|+....+ |..+|.+ ++
T Consensus       530 lH~~E~WFHgkle~R~eAekll~eycke~G~~dGtFlVReS~tFvgDytLSfwr~grv~HcRIrsk~e~-gt~Kyyl~dN  608 (1267)
T KOG1264|consen  530 LHFGEKWFHGKLEGRTEAEKLLQEYCKETGGKDGTFLVRESETFVGDYTLSFWRSGRVQHCRIRSKMEG-GTLKYYLTDN  608 (1267)
T ss_pred             hccchhhhhcccccchHHHHHHHHHHHHhCCCCccEEEeeccccccceeeeeeECCceeeEEEEeeecC-CceeEEEecc
Confidence            4667899999999 9999999986     2557999999999999999999999999999999976554 3444555 67


Q ss_pred             ceecChHhhHHhhhcccCCCc----cccccccccceeeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEeeCCCee
Q psy10852         80 KTFSDLPSLLAFYKVHYLDTS----PLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEV  155 (563)
Q Consensus        80 ~~F~sl~~Li~~y~~~~~~~~----~L~~p~~~~~~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~~~g~~  155 (563)
                      ..|+||.+||.||+.+.|-+.    .|..||++                                               
T Consensus       609 ~vfdslY~LI~~Y~~~~Lr~aeF~m~LtePvPq-----------------------------------------------  641 (1267)
T KOG1264|consen  609 LVFDSLYALIQHYRETHLRCAEFEMRLTEPVPQ-----------------------------------------------  641 (1267)
T ss_pred             hhHHHHHHHHHHHHhccccccceEEEecCCCCC-----------------------------------------------
Confidence            999999999999999866211    11122111                                               


Q ss_pred             eEEecCceeecccccccccccccccCCCCCCCCCCCCCccccccccccCccceeeeeccccCCCCCCceeeccCCEEEEe
Q psy10852        156 GSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVT  235 (563)
Q Consensus       156 G~fP~~yv~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~a~~~~eLsf~~Gd~v~V~  235 (563)
                                                                                                      
T Consensus       642 --------------------------------------------------------------------------------  641 (1267)
T KOG1264|consen  642 --------------------------------------------------------------------------------  641 (1267)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eecCCCceeeeeCCceeeccccceeecCCCCCCCCCCCCCccCCCCCCCCCCccccccCHHHHHHHHhcCCCCCcEEEEe
Q psy10852        236 KTNINGQWEGELNGKTGHFPFTHVEFIPTNETMPFHSSMKMTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRD  315 (563)
Q Consensus       236 ~~~~~~W~~g~~~g~~G~~P~~~ve~~~~~~~~p~~~~~~~~~~~~~~~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~  315 (563)
                                                                  ..+|+..+|||..++|++||.+|..-+.+|+|||| 
T Consensus       642 --------------------------------------------p~~He~k~W~~as~treqAE~mL~rvp~DGaFLiR-  676 (1267)
T KOG1264|consen  642 --------------------------------------------PNPHESKPWYHASLTREQAEDMLMRVPRDGAFLIR-  676 (1267)
T ss_pred             --------------------------------------------CCcccCCccccccccHHHHHHHHhhCccCcceEEE-
Confidence                                                        13567779999999999999999998888999999 


Q ss_pred             cCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeCCcccCChhhHHhhhhcccCCC-Ccccccccc-----------
Q psy10852        316 SNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDT-SPLIKPATK-----------  383 (563)
Q Consensus       316 S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~~~~f~sl~~lv~~y~~~~~~~-~~l~~P~~~-----------  383 (563)
                      +...+..|++|.+.+++++||+|.+    +|.. |.++...|.||.+||+||..+++.. ..|..|+..           
T Consensus       677 ~~~~~nsy~iSfr~~gkikHcRi~r----dGr~-fvl~t~~FesLv~lv~yY~k~~lyR~mkLr~PVnee~l~~~~~e~d  751 (1267)
T KOG1264|consen  677 KREGSNSYAISFRARGKIKHCRINR----DGRH-FVLGTSAFESLVELVSYYEKHPLYRKMKLRYPVNEELLERYNTERD  751 (1267)
T ss_pred             eccCCceEEEEEEEcCcEeEEEEcc----CceE-EEeccHHHHHHHHHHHHHhcChhhhcccccCcCCHHHHHHhhhhcc
Confidence            5555889999999999999999988    4554 9999888999999999999988764 445555532           


Q ss_pred             ---------------------ceeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEecc
Q psy10852        384 ---------------------TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS  442 (563)
Q Consensus       384 ---------------------~~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~  442 (563)
                                           ....|+|||+|.|+.++||+|.+|.+|+++.+.+.|||.|...+...+|||++||+.+.
T Consensus       752 ~~a~~d~~r~pg~yme~n~~~~~vt~kAL~~Yka~r~DELSFpk~aiItnv~keeg~wWrGdYGg~iq~wfPsnyVeei~  831 (1267)
T KOG1264|consen  752 INALYDVSRMPGDYMEINPSMPQVTVKALYDYKAKRSDELSFPKGAIITNVSKEEGGWWRGDYGGRIQQWFPSNYVEEIS  831 (1267)
T ss_pred             cccccccccCCCCccccCccccchhhhhhhccccCCcccccccccceeEeeeccCCceeecccccceeeeccHHHhhhhc
Confidence                                 23568999999999999999999999999999999999998656789999999999887


Q ss_pred             CC
Q psy10852        443 EG  444 (563)
Q Consensus       443 ~~  444 (563)
                      ..
T Consensus       832 ~~  833 (1267)
T KOG1264|consen  832 TA  833 (1267)
T ss_pred             cc
Confidence            64

>KOG4226|consensus

Probab=100.00  E-value=2.2e-37  Score=282.30  Aligned_cols=246  Identities=21%  Similarity=0.391  Sum_probs=192.8

Q ss_pred             eeeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEeeCCCeeeEEecCceeecccccccccccccccCCCCCCCCCC
Q psy10852        111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQ  190 (563)
Q Consensus       111 ~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~~~g~~G~fP~~yv~~~~~~~~~~~~~~~~~~g~~~~~~~~  190 (563)
                      ..++..|.|.++.++||++.+|+.|.|++|..++||+|. .+|+.||||+|||.+..+.........++..      +..
T Consensus       108 t~AvVKf~Y~a~~eDELsLtKGtrv~vmEKssDGWWrG~-~ng~VGWFPSNYv~E~~ds~~gd~~s~~~~~------~~A  180 (379)
T KOG4226|consen  108 TPAVVKFNYVAEREDELSLTKGTRVTVMEKSSDGWWRGS-YNGQVGWFPSNYVTEEVDSAAGDSPSFLSLR------KAA  180 (379)
T ss_pred             CceEEEEeeccccccccccccCcEEEEEEeccCcceecc-cCCeeccccccceehhccccccCCccceecc------hhh
Confidence            448899999999999999999999999999999999996 7999999999999987654221110000000      000


Q ss_pred             CCCccccccccccCccceeeeeccccCCCCCCceeeccCCEEEEeeecC--CCceeeee-CCceeeccccceeecCCCCC
Q psy10852        191 QTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI--NGQWEGEL-NGKTGHFPFTHVEFIPTNET  267 (563)
Q Consensus       191 ~~~~~~~~~~~~~~p~~~~~~~~~~~~a~~~~eLsf~~Gd~v~V~~~~~--~~W~~g~~-~g~~G~~P~~~ve~~~~~~~  267 (563)
                      ...+.      ..-..+.-|.+.|.+.+..++||+|++||.+.|+++..  .+||+++. +|++|++|.||++.+.+...
T Consensus       181 ~a~n~------~~s~vl~vVvaLYsFsssndeELsFeKGerleivd~Pe~DPdWwkarn~~G~vGLVPrNYv~vl~d~~~  254 (379)
T KOG4226|consen  181 SASNG------QGSRVLHVVVALYSFSSSNDEELSFEKGERLEIVDKPENDPDWWKARNARGQVGLVPRNYVVVLSDGPS  254 (379)
T ss_pred             cccCC------CCceEEEEEEEEecccCCChhhcccccCceeEeccCCCCCchHHhhcccCCccceeecceEEEeccCcc
Confidence            00000      00124455667888889999999999999999999874  57999986 79999999999999886432


Q ss_pred             CCCCCCCCc--------cCCCCCCCCCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEe
Q psy10852        268 MPFHSSMKM--------TGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN  339 (563)
Q Consensus       268 ~p~~~~~~~--------~~~~~~~~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~  339 (563)
                      ......+.+        +.........+||+|.++|.+|+..|..+...|.||||+|++.||+|++|++..++.+||+++
T Consensus       255 ts~~~~~s~~pq~sgn~p~~sg~~ag~~WYyG~itR~qae~~Ln~hG~eGdFLiRDSEsnpgD~SvSlka~grNKHFkVq  334 (379)
T KOG4226|consen  255 TSKALHPSHAPQISGNGPSSSGRFAGRPWYYGNITRHQAECALNEHGHEGDFLIRDSESNPGDFSVSLKASGRNKHFKVQ  334 (379)
T ss_pred             ccccCCccccccccCCCCCccccccCCcceeccccHHHHHHHHhccCccCceEEecCCCCCcceeEEeeccCCCcceEEE
Confidence            211111111        112233556799999999999999998887889999999999999999999999999999999


Q ss_pred             eecCCCcceeEEeCCcccCChhhHHhhhhcccCCC
Q psy10852        340 KITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDT  374 (563)
Q Consensus       340 ~~~~~~~~~~~~i~~~~f~sl~~lv~~y~~~~~~~  374 (563)
                      ..++.     |+|+.+.|.+|.+||+||++.++-+
T Consensus       335 ~~d~~-----ycIGqRkF~tmd~Lv~HY~kaPIft  364 (379)
T KOG4226|consen  335 LVDNV-----YCIGQRKFHTMDELVEHYKKAPIFT  364 (379)
T ss_pred             Eecce-----EEeccceeccHHHHHHhhhcCCcee
Confidence            98776     9999999999999999999877654

>KOG4348|consensus

Probab=99.97  E-value=1.1e-32  Score=266.46  Aligned_cols=246  Identities=27%  Similarity=0.427  Sum_probs=165.1

Q ss_pred             eeeccccCCCCCCceeeccCCEEEEeeecCCCceeeeeCCceeeccccceeecCCCCCCCCCCCCCccCCCCCCCCCCcc
Q psy10852        210 VKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETMPFHSSMKMTGTFDPHDRNSWY  289 (563)
Q Consensus       210 ~~~~~~~~a~~~~eLsf~~Gd~v~V~~~~~~~W~~g~~~g~~G~~P~~~ve~~~~~~~~p~~~~~~~~~~~~~~~~~~w~  289 (563)
                      ++..|.|.|.-++||.++.|++|.=+++.+.|||+|++||++|.||.|||..+...-..                     
T Consensus         4 ~ive~dy~a~hddelti~vgeii~nvkk~e~gw~egelngrrg~fpdnfV~eik~e~k~---------------------   62 (627)
T KOG4348|consen    4 YIVEYDYDAVHDDELTIRVGEIIRNVKKLEEGWLEGELNGRRGQFPDNFVVEIKVEFKD---------------------   62 (627)
T ss_pred             eeeecccccccCceeeEeHHHHHHhhhhhccceeeceeccccccCCchhhhhhhhhccc---------------------
Confidence            56677778999999999999999999999999999999999999999999888642000                     


Q ss_pred             ccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeCCcccCChhhHHhhhhc
Q psy10852        290 FGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKV  369 (563)
Q Consensus       290 ~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~~~~f~sl~~lv~~y~~  369 (563)
                                         .....+.+..                 -.++. .+.          ..|..      |   
T Consensus        63 -------------------d~l~nk~~r~-----------------~l~q~-~s~----------n~l~~------~---   86 (627)
T KOG4348|consen   63 -------------------DDLVNKLSRD-----------------SLVQM-TSR----------NPLTV------H---   86 (627)
T ss_pred             -------------------cccccccccc-----------------chhhc-ccC----------CCccc------c---
Confidence                               0000000000                 00000 000          00000      0   


Q ss_pred             ccCCCC-ccccccccceeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCCcccc
Q psy10852        370 HYLDTS-PLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSIL  448 (563)
Q Consensus       370 ~~~~~~-~l~~P~~~~~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~~~~~  448 (563)
                         ... ....|.......|+++|.|.+++++||+|+.||+|.|++..++|||.|+ ++|+.|+||+|||..........
T Consensus        87 ---q~v~rtn~~~q~~~r~c~v~f~Y~pqndDELelkVGDiIeli~eVEeGWw~G~-Lngk~GmFPsNFVkel~~~sde~  162 (627)
T KOG4348|consen   87 ---QQVERTNPPPQPQARICVVTFAYSPQNDDELELKVGDIIELISEVEEGWWKGK-LNGKVGMFPSNFVKELPTPSDES  162 (627)
T ss_pred             ---CcccccCCCCCccceeEEEEEeecCCCCceeeeeeccHHHhhhHhhhhhhhce-ecCcccccchhhceecCCCCcch
Confidence               000 0011111236689999999999999999999999999999999999998 89999999999999877542210


Q ss_pred             c------ccccCCC----------CCCCCCCCC--------------------C--------CC----------------
Q psy10852        449 S------LRNLHLD----------SSSHHVPQQ--------------------Q--------TT----------------  468 (563)
Q Consensus       449 ~------~~~~~~~----------~~~~~~~~~--------------------~--------~~----------------  468 (563)
                      .      ..++.+.          ..+....++                    .        +.                
T Consensus       163 ~~aqd~~~S~stlagst~~~ps~s~~SE~a~gsv~qPKkI~g~gfgdIfk~~pVklr~rt~~sete~~p~~~~i~~~l~a  242 (627)
T KOG4348|consen  163 AAAQDPAASASTLAGSTARTPSKSIGSEVAMGSVTQPKKIDGTGFGDIFKPAPVKLRLRTKFSETEKKPEKPFISSALSA  242 (627)
T ss_pred             hhhcCcccchhhhcCcCCCCCcccccchhhcccccCcccccCCCcccccCCccceecccccccccccccccchhhhccCc
Confidence            0      0000000          000000000                    0        00                


Q ss_pred             -----ccccccc--ccccccceEEeecCCCCCCCCCCeeccCCCEEEEEEeC--CCCEEEEEeCCeeeeecCCceEEcC
Q psy10852        469 -----PVRKTHL--EVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTN--INGQWEGELNGKTGHFPFTHVEFIP  538 (563)
Q Consensus       469 -----~~~~~~~--~~~~~~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~--~~~w~~g~~~g~~G~~P~~~v~~~~  538 (563)
                           ...++.+  ..+..++||++|.|.+|  +.+||+|++||+|.++.+.  +.|||+|+++|++|.||.|||+.+.
T Consensus       243 sT~s~d~tktd~~~~tKtKeycrv~F~Ye~q--ndDELt~KEgdil~lItK~cgdaGWweGELnGk~GvFPDNFv~lv~  319 (627)
T KOG4348|consen  243 STQSVDITKTDTAETTKTKEYCRVKFVYEPQ--NDDELTLKEGDILILITKNCGDAGWWEGELNGKKGVFPDNFVELVQ  319 (627)
T ss_pred             cccCccccccccccchhhhhheeeeeeecCC--CccceeeccccEEEEecccccccceeeeeecCccccCCchhhhhcC
Confidence                 0001111  11235689999999955  5889999999999999876  4899999999999999999999886

>KOG4226|consensus

Probab=99.97  E-value=1.1e-31  Score=245.14  Aligned_cols=239  Identities=25%  Similarity=0.441  Sum_probs=167.0

Q ss_pred             eeeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEeeCCCeeeEEecCceeeccccccccccccccc-CCCCCCCCC
Q psy10852        111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHL-DSSSHHVPQ  189 (563)
Q Consensus       111 ~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~~~g~~G~fP~~yv~~~~~~~~~~~~~~~~~-~g~~~~~~~  189 (563)
                      ..++|.+||.+|.++||-+++++.+.++.. ...||+++|...++|++|+|||+............++.- .|. +..+.
T Consensus         5 ~~vvak~dy~aq~~qeldikkner~~lldd-sk~wwrvrns~n~tgyvpsnyverkn~~~~~si~knlkd~~g~-kt~~k   82 (379)
T KOG4226|consen    5 VIVVAKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNSANRTGYVPSNYVERKNSLKKGSIVKNLKDTLGL-KTRRK   82 (379)
T ss_pred             EEEEEEechhcccchhccccccceEEEEcC-CccceeeecccccCCcccchhhhcccchhhhHHHHhhhhcccc-ccccC
Confidence            457999999999999999999999999853 468999999999999999999998765433222111111 121 11111


Q ss_pred             -CCCCccccccccccCc-----cc-eeeeeccccCCCCCCceeeccCCEEEEeeecCCCceeeeeCCceeeccccceeec
Q psy10852        190 -QQTTPVRKTHLEVKLP-----AF-ARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI  262 (563)
Q Consensus       190 -~~~~~~~~~~~~~~~p-----~~-~~~~~~~~~~a~~~~eLsf~~Gd~v~V~~~~~~~W~~g~~~g~~G~~P~~~ve~~  262 (563)
                       +.......+...+.+|     .+ ..+..+|++.+..++||+|.+|+.|.|.++..+|||+|..+|++||||+|||...
T Consensus        83 ~s~~~~~~sp~~d~~~ppd~~~~~~t~AvVKf~Y~a~~eDELsLtKGtrv~vmEKssDGWWrG~~ng~VGWFPSNYv~E~  162 (379)
T KOG4226|consen   83 TSARDASPSPSTDAEYPPDRIYDLNTPAVVKFNYVAEREDELSLTKGTRVTVMEKSSDGWWRGSYNGQVGWFPSNYVTEE  162 (379)
T ss_pred             CCccccCCCCCccccCCcchhhhcCCceEEEEeeccccccccccccCcEEEEEEeccCcceecccCCeeccccccceehh
Confidence             1111111111111111     11 2245556668899999999999999999999999999999999999999999877


Q ss_pred             CCCCCCCCCCCCCccCCCCCCCCCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeec
Q psy10852        263 PTNETMPFHSSMKMTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKIT  342 (563)
Q Consensus       263 ~~~~~~p~~~~~~~~~~~~~~~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~  342 (563)
                      .+...-                                      ..+.|+-+.-..      ...               
T Consensus       163 ~ds~~g--------------------------------------d~~s~~~~~~~A------~a~---------------  183 (379)
T KOG4226|consen  163 VDSAAG--------------------------------------DSPSFLSLRKAA------SAS---------------  183 (379)
T ss_pred             cccccc--------------------------------------CCccceecchhh------ccc---------------
Confidence            642110                                      001121110000      000               


Q ss_pred             CCCcceeEEeCCcccCChhhHHhhhhcccCCCCccccccccceeeEEEeecccCCCCCCCCCCCCCEEEEEEec--CCCc
Q psy10852        343 NTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHW  420 (563)
Q Consensus       343 ~~~~~~~~~i~~~~f~sl~~lv~~y~~~~~~~~~l~~P~~~~~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~--~~~W  420 (563)
                      +                                   .+.+.....++|||.|.+..+.||+|++||.+.|+++.  |++|
T Consensus       184 n-----------------------------------~~~s~vl~vVvaLYsFsssndeELsFeKGerleivd~Pe~DPdW  228 (379)
T KOG4226|consen  184 N-----------------------------------GQGSRVLHVVVALYSFSSSNDEELSFEKGERLEIVDKPENDPDW  228 (379)
T ss_pred             C-----------------------------------CCCceEEEEEEEEecccCCChhhcccccCceeEeccCCCCCchH
Confidence            0                                   00011134689999999999999999999999999987  4689


Q ss_pred             EEEEecCCcEEEEcCCCeEeccCCc
Q psy10852        421 WTAQNISGEVGSIPVPYVQKYSEGM  445 (563)
Q Consensus       421 ~~~~~~~g~~G~~P~~~v~~~~~~~  445 (563)
                      |.+++.+|+.|+||.|||+.+....
T Consensus       229 wkarn~~G~vGLVPrNYv~vl~d~~  253 (379)
T KOG4226|consen  229 WKARNARGQVGLVPRNYVVVLSDGP  253 (379)
T ss_pred             HhhcccCCccceeecceEEEeccCc
Confidence            9999999999999999999998763

>KOG4348|consensus

Probab=99.97  E-value=1.1e-31  Score=259.46  Aligned_cols=297  Identities=26%  Similarity=0.427  Sum_probs=177.2

Q ss_pred             eeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEeeCCCeeeEEecCceeecccccccccccc------cc--cCCC
Q psy10852        112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRN------LH--LDSS  183 (563)
Q Consensus       112 ~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~~~g~~G~fP~~yv~~~~~~~~~~~~~~------~~--~~g~  183 (563)
                      .++..|||.+++++||.++.|+||..+.+.+.+||.|. ++|+.|+||.|||.++...+...++.+      +.  .++.
T Consensus         3 d~ive~dy~a~hddelti~vgeii~nvkk~e~gw~ege-lngrrg~fpdnfV~eik~e~k~d~l~nk~~r~~l~q~~s~n   81 (627)
T KOG4348|consen    3 DYIVEYDYDAVHDDELTIRVGEIIRNVKKLEEGWLEGE-LNGRRGQFPDNFVVEIKVEFKDDDLVNKLSRDSLVQMTSRN   81 (627)
T ss_pred             ceeeecccccccCceeeEeHHHHHHhhhhhccceeece-eccccccCCchhhhhhhhhcccccccccccccchhhcccCC
Confidence            47788999999999999999999999999999999997 999999999999998876655443221      10  1111


Q ss_pred             CCCCCCCCCCccccccccccCccceeeeeccccCCCCCCceeeccCCEEEEeeecCCCceeeeeCCceeeccccceeecC
Q psy10852        184 SHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP  263 (563)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~a~~~~eLsf~~Gd~v~V~~~~~~~W~~g~~~g~~G~~P~~~ve~~~  263 (563)
                      .-+..++...+..+.   ..-..+|.|.|.|.+  +.++||.|+.||+|.|+..+++|||.|.++|+.|+||+|||..+.
T Consensus        82 ~l~~~q~v~rtn~~~---q~~~r~c~v~f~Y~p--qndDELelkVGDiIeli~eVEeGWw~G~Lngk~GmFPsNFVkel~  156 (627)
T KOG4348|consen   82 PLTVHQQVERTNPPP---QPQARICVVTFAYSP--QNDDELELKVGDIIELISEVEEGWWKGKLNGKVGMFPSNFVKELP  156 (627)
T ss_pred             CccccCcccccCCCC---CccceeEEEEEeecC--CCCceeeeeeccHHHhhhHhhhhhhhceecCcccccchhhceecC
Confidence            112222221111111   111245788888755  579999999999999999999999999999999999999999987


Q ss_pred             CCCCCCCCCCCCccCCCCCCCCCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecC
Q psy10852        264 TNETMPFHSSMKMTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN  343 (563)
Q Consensus       264 ~~~~~p~~~~~~~~~~~~~~~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~  343 (563)
                      ..+... ..      ..++..++.-..|...+.-+...       |      |+...|+    +....     .|..+..
T Consensus       157 ~~sde~-~~------aqd~~~S~stlagst~~~ps~s~-------~------SE~a~gs----v~qPK-----kI~g~gf  207 (627)
T KOG4348|consen  157 TPSDES-AA------AQDPAASASTLAGSTARTPSKSI-------G------SEVAMGS----VTQPK-----KIDGTGF  207 (627)
T ss_pred             CCCcch-hh------hcCcccchhhhcCcCCCCCcccc-------c------chhhccc----ccCcc-----cccCCCc
Confidence            644310 00      00111111111111111110000       0      0000000    00000     0000000


Q ss_pred             CCcce--eEEeC-CcccCCh-----hhHHhhh---hcccCCC-CccccccccceeeEEEeecccCCCCCCCCCCCCCEEE
Q psy10852        344 TEQQT--CYKIG-DKTFSDL-----PSLLAFY---KVHYLDT-SPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILI  411 (563)
Q Consensus       344 ~~~~~--~~~i~-~~~f~sl-----~~lv~~y---~~~~~~~-~~l~~P~~~~~~~~~a~~~y~~~~~~el~~~~g~~v~  411 (563)
                      ++...  -..+. ...|...     ..+|..-   .+.+.+. ..-..-.-+...+|+++|.|++++++||.|++||+|.
T Consensus       208 gdIfk~~pVklr~rt~~sete~~p~~~~i~~~l~asT~s~d~tktd~~~~tKtKeycrv~F~Ye~qndDELt~KEgdil~  287 (627)
T KOG4348|consen  208 GDIFKPAPVKLRLRTKFSETEKKPEKPFISSALSASTQSVDITKTDTAETTKTKEYCRVKFVYEPQNDDELTLKEGDILI  287 (627)
T ss_pred             ccccCCccceecccccccccccccccchhhhccCccccCccccccccccchhhhhheeeeeeecCCCccceeeccccEEE
Confidence            00000  00000 0011110     1111100   0000000 0001111235779999999999999999999999999


Q ss_pred             EEEec--CCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        412 VVSKD--EEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       412 v~~~~--~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ++.+.  +.|||.|+ ++|+.|+||.|||+.+...
T Consensus       288 lItK~cgdaGWweGE-LnGk~GvFPDNFv~lv~~~  321 (627)
T KOG4348|consen  288 LITKNCGDAGWWEGE-LNGKKGVFPDNFVELVQVP  321 (627)
T ss_pred             Eecccccccceeeee-ecCccccCCchhhhhcCCc
Confidence            99976  56999998 8999999999999988743

>KOG4225|consensus

Probab=99.97  E-value=1.8e-30  Score=252.64  Aligned_cols=253  Identities=21%  Similarity=0.377  Sum_probs=168.2

Q ss_pred             ceeeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEeeCCCeeeEEecCceeecccccccccccccccCCCCCCCCC
Q psy10852        110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQ  189 (563)
Q Consensus       110 ~~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~~~g~~G~fP~~yv~~~~~~~~~~~~~~~~~~g~~~~~~~  189 (563)
                      ...++|+|+|.+++..||+|.+||||.|+.+.|++|+.|. .+|+.|+||++||+.+.......+.+             
T Consensus       230 ~~~aralf~F~~qt~kEL~~~kGDIVyI~rkvD~nWyeGE-hhGr~GifP~sYvE~~~~~e~~qP~~-------------  295 (489)
T KOG4225|consen  230 KRAARALFDFEAQTPKELPFNKGDIVYILRKVDQNWYEGE-HHGRVGIFPASYVEILTPREKAQPAR-------------  295 (489)
T ss_pred             cchhhheeccccCCccccccCCCCEEEEEeeccCceeeee-ecceecceechheeecCcccccCcCC-------------
Confidence            3448999999999999999999999999999999999997 99999999999999987532211100             


Q ss_pred             CCCCccccccccccCccceeeeeccccCCCCCCceeeccCCEEEEeeecCCCceeeeeC--CceeeccccceeecCCCCC
Q psy10852        190 QQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELN--GKTGHFPFTHVEFIPTNET  267 (563)
Q Consensus       190 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~a~~~~eLsf~~Gd~v~V~~~~~~~W~~g~~~--g~~G~~P~~~ve~~~~~~~  267 (563)
                               ....+......+++.|.+++..+.||+|++|+.|.++.+.+.+|++|.+.  ++.|+||.+||+.+.....
T Consensus       296 ---------~~P~q~~~~g~a~A~y~F~~~s~~Els~~kge~v~L~r~vd~nw~eG~i~g~~rqgifP~SyVev~~~~~~  366 (489)
T KOG4225|consen  296 ---------PPPQQVLEQGEAIAKYNFNADSPVELSLRKGERVTLTRQVDENWYEGKIPGTNRQGIFPASYVEVIKSPKL  366 (489)
T ss_pred             ---------CCcccccccccccccCCCCCCCchhcccccCceEEEEEeccCceeeccccccccccccchhHhhhhhcccc
Confidence                     01123445567788888899999999999999999999999999999986  8999999999999986421


Q ss_pred             -CCCC-CCCCc-cCCCCCCCCCCccccccCHHHHHHHHhc-CCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecC
Q psy10852        268 -MPFH-SSMKM-TGTFDPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN  343 (563)
Q Consensus       268 -~p~~-~~~~~-~~~~~~~~~~~w~~g~~sr~~A~~~l~~-~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~  343 (563)
                       .+.. +..+. +...+..           +...+..... ..+            ...+.......+            
T Consensus       367 ~~~~~~~~~p~~p~~s~~~-----------~~~~~~s~~~~~~~------------~~t~~~~q~~~n------------  411 (489)
T KOG4225|consen  367 ELPLDYPDLPIPPRSSNEL-----------RPLSEDSMKNAWPQ------------THTQSSTQPPEN------------  411 (489)
T ss_pred             ccccccCCCCCCcccchhh-----------cccccchhhhcccc------------cccccccCCCCC------------
Confidence             1111 00000 0000000           0000000000 000            000000000000            


Q ss_pred             CCcceeEEeCCcccCChhhHHhhhhcccCCCCccccccccceeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEE
Q psy10852        344 TEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTA  423 (563)
Q Consensus       344 ~~~~~~~~i~~~~f~sl~~lv~~y~~~~~~~~~l~~P~~~~~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~  423 (563)
                                   |...+...+    ..+..  ...+.  ....++|||.|.+++++||.|.+||+|.|++++|+||+.|
T Consensus       412 -------------~~qepr~~~----~~~~~--~qt~~--~~l~yrAly~Y~pqnedeLEl~egDii~VmeKcddgWfvG  470 (489)
T KOG4225|consen  412 -------------FPQEPRVTE----KNDAH--SQTSS--EPLKYRALYSYRPQNEDELELREGDIIDVMEKCDDGWFVG  470 (489)
T ss_pred             -------------ccccccccc----ccCcc--cCCCC--CcccceeccccCCCCchhheeccCCEEeeeecccCcceec
Confidence                         000000000    00000  00000  1124899999999999999999999999999999999999


Q ss_pred             Ee-cCCcEEEEcCCCeEec
Q psy10852        424 QN-ISGEVGSIPVPYVQKY  441 (563)
Q Consensus       424 ~~-~~g~~G~~P~~~v~~~  441 (563)
                      +. +.|+.|.||.|||+.+
T Consensus       471 ts~rtg~fGtFPgnyV~~~  489 (489)
T KOG4225|consen  471 TSRRTGKFGTFPGNYVKRL  489 (489)
T ss_pred             cceecccccccCccccccC
Confidence            42 5899999999999863

>KOG1029|consensus

Probab=99.96  E-value=1.2e-29  Score=260.38  Aligned_cols=286  Identities=25%  Similarity=0.414  Sum_probs=166.1

Q ss_pred             eeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEeeCCCeeeEEecCceeecccccccccccccccCCCCCCCCCCC
Q psy10852        112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQ  191 (563)
Q Consensus       112 ~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~~~g~~G~fP~~yv~~~~~~~~~~~~~~~~~~g~~~~~~~~~  191 (563)
                      .|+|+|.|.+..+++|+|.+||+|+||++. +.||+| +..|++||||.+||+++.-.....- ...+........+.  
T Consensus       815 q~iA~y~wrakke~dLsFskgd~I~Vlekq-emwW~G-~v~g~~GwFPksYVk~~~~~t~st~-~~~s~es~sae~p~--  889 (1118)
T KOG1029|consen  815 QAIALYPWRAKKENDLSFSKGDTITVLEKQ-EMWWFG-EVAGEIGWFPKSYVKEVGAITGSTT-KIESPESLSAEAPG--  889 (1118)
T ss_pred             hHHhhccccccccccccccCCCeeeeehhc-cceecc-cccCccCcCcHHhhhhccccccccc-cccCcccccccCcc--
Confidence            689999999999999999999999999886 689999 5999999999999997653211110 00000000000000  


Q ss_pred             CCccccccc-cccCccceeeeecccc-CCCCCCceeeccCCEEEEeeecCCCceeeeeCCceeecccc-ceeecCCCCCC
Q psy10852        192 TTPVRKTHL-EVKLPAFARVKQVRVP-NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFT-HVEFIPTNETM  268 (563)
Q Consensus       192 ~~~~~~~~~-~~~~p~~~~~~~~~~~-~a~~~~eLsf~~Gd~v~V~~~~~~~W~~g~~~g~~G~~P~~-~ve~~~~~~~~  268 (563)
                       ..++.... ........++.+.|.+ .+.....|.|..||.|.|++++ +.||.|.++++.|+||+| |+...+.+..+
T Consensus       890 -~~~~~a~~taa~v~~qeq~ya~~~~~e~vEq~dlt~~egd~iLvtekd-geww~gt~~~r~gifPan~y~r~~~q~gs~  967 (1118)
T KOG1029|consen  890 -AAASDATPTAAPVAPQEQLYAVYPYFEAVEQGDLTFHEGDEILVTEKD-GEWWTGTCGDREGIFPANYYVRPKDQEGSG  967 (1118)
T ss_pred             -ccccccCcccccccccceeEEEecccccccCCCccccccceEEEeecc-CceeccccCCccccccccceeeehhccCCC
Confidence             00000000 0000111223333333 4467789999999999999876 569999999999999999 56555544433


Q ss_pred             CCCCCCCccCCCCCCCCCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcce
Q psy10852        269 PFHSSMKMTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQT  348 (563)
Q Consensus       269 p~~~~~~~~~~~~~~~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~  348 (563)
                      .+...-..+.       .+        ..| +++.      .|..      .|.-.|++..+.   -+.|... +..|+|
T Consensus       968 Tp~k~g~~~k-------kp--------eiA-qVia------~yvA------s~peQLsla~Gq---lIlIrkK-n~sGWW 1015 (1118)
T KOG1029|consen  968 TPPKQGPTPK-------KP--------EIA-QVIA------DYVA------SGPEQLSLAPGQ---LILIRKK-NASGWW 1015 (1118)
T ss_pred             CCCCCCCCCC-------Cc--------hhh-hhhh------hhhc------cCchhccccCcc---EEEEEec-CCCccc
Confidence            2211111110       00        001 1110      0100      000011111111   0111111 112333


Q ss_pred             -e-EEeCC-----cccCChhhHHhhhhcccCCCCccccccccceeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcE
Q psy10852        349 -C-YKIGD-----KTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWW  421 (563)
Q Consensus       349 -~-~~i~~-----~~f~sl~~lv~~y~~~~~~~~~l~~P~~~~~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~  421 (563)
                       | +...+     ..|+..  .|....    ..+.-..|.....+.++|+|||.+++++||+|.+||+|.|+.+++.+||
T Consensus      1016 eGELqarGkkrq~GWFPa~--yVKvL~----~~s~raTPa~~~v~qviamYdY~AqndDELsF~kgdiI~VlnkdepeWW 1089 (1118)
T KOG1029|consen 1016 EGELQARGKKRQIGWFPAE--YVKVLE----PGSGRATPATRPVCQVIAMYDYEAQNDDELSFKKGDIINVLNKDEPEWW 1089 (1118)
T ss_pred             hhhHhhcCCccccccccHH--Hhhhcc----CCCCcCCCCCCccceeEEeeccccCCcccccccCCCEEEecCCCChhhh
Confidence             0 11111     234421  111000    1112233444446889999999999999999999999999999999999


Q ss_pred             EEEecCCcEEEEcCCCeEeccC
Q psy10852        422 TAQNISGEVGSIPVPYVQKYSE  443 (563)
Q Consensus       422 ~~~~~~g~~G~~P~~~v~~~~~  443 (563)
                      .|. .+|+.|+||+|||+....
T Consensus      1090 ~Ge-~ng~sGLFPSNYV~k~tt 1110 (1118)
T KOG1029|consen 1090 SGE-RNGKSGLFPSNYVQKQTT 1110 (1118)
T ss_pred             ccc-ccCccccCcccccccccc
Confidence            997 899999999999976544

>KOG2996|consensus

Probab=99.96  E-value=2.1e-29  Score=251.82  Aligned_cols=206  Identities=29%  Similarity=0.538  Sum_probs=169.3

Q ss_pred             ceeeccCCEEEEeeecC-CCceeeee--CCceeeccccceeecCCCCCCCCCCCCCccCCCCCCCCCCccccccCHHHHH
Q psy10852        223 ALKLEIGDIIKVTKTNI-NGQWEGEL--NGKTGHFPFTHVEFIPTNETMPFHSSMKMTGTFDPHDRNSWYFGMMTRQEAQ  299 (563)
Q Consensus       223 eLsf~~Gd~v~V~~~~~-~~W~~g~~--~g~~G~~P~~~ve~~~~~~~~p~~~~~~~~~~~~~~~~~~w~~g~~sr~~A~  299 (563)
                      .|.+..||++.++...+ ..||+|+.  .+..|+||++-|++...-..-+...       .-.++...||.|+|.|.+|+
T Consensus       626 ~l~~~~gdvlel~~~d~~s~~w~gr~~~sr~sg~fpss~vkp~~~vpr~~~~~-------~~d~s~~~WyaG~MERaqae  698 (865)
T KOG2996|consen  626 RLVLQEGDVLELLKGDAESSWWEGRNHGSRESGNFPSSTVKPCPSVPRQQDYV-------PTDYSEFPWYAGEMERAQAE  698 (865)
T ss_pred             ceEecCCceeehhcCCCCCcccccCCccCCccCCCCccccCcCCCCCCCCCCC-------ccchhhhhhhcchHhhhhhh
Confidence            57888999999888765 67999997  4689999999998765421110000       12244569999999999999


Q ss_pred             HHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeC-CcccCChhhHHhhhhcccCCC----
Q psy10852        300 AILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDLPSLLAFYKVHYLDT----  374 (563)
Q Consensus       300 ~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~-~~~f~sl~~lv~~y~~~~~~~----  374 (563)
                      ..|.+.. +|+||||.+....+.|++|+++++.|+|+.|...+.-     ++|. +..|.|+.+||+||+.+++..    
T Consensus       699 s~Lk~~~-ngT~LVR~r~kea~e~AISikynnevKHikI~~~dg~-----~~i~E~k~F~sl~ELVeyYq~~sLke~Fk~  772 (865)
T KOG2996|consen  699 STLKNRP-NGTYLVRYRTKEAKEFAISIKYNNEVKHIKIETNDGK-----VHITEDKKFNSLVELVEYYQSHSLKEIFKA  772 (865)
T ss_pred             hHhhcCC-CceEEEEecccchhheeEEEEeccccceEEEEecCCe-----EEechhhhhhhHHHHHHHHHhccHHHHHHH
Confidence            9998854 5999999999989999999999999999999987433     7886 599999999999999998753    


Q ss_pred             --Cccccccc--------------------cceeeEEEeecccCCCCCCCCCCCCCEEEEEEecC--CCcEEEEecCCcE
Q psy10852        375 --SPLIKPAT--------------------KTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE--EHWWTAQNISGEV  430 (563)
Q Consensus       375 --~~l~~P~~--------------------~~~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~--~~W~~~~~~~g~~  430 (563)
                        ++|..|+.                    +....++|-|||-+.+..||||++||+|.++.+..  .|||.|+ .+|+.
T Consensus       773 LDTtLk~Pyke~e~sa~~~~~~~~~sv~s~~~~g~AvarYdf~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGe-vngrv  851 (865)
T KOG2996|consen  773 LDTTLKFPYKEPEHSAGQRGNRAGNSVLSPKVVGTAVARYDFCARDMRELSLKEGDVVKIYDKVGEDQGWWKGE-VNGRV  851 (865)
T ss_pred             hhhhhcCCCcChhhhhhhccccccccccCcceeeeeeeccccCCCchhhcccccCCEEEEehhccccCceecce-ecCcc
Confidence              56777764                    13456788899999999999999999999999874  5999998 89999


Q ss_pred             EEEcCCCeEecc
Q psy10852        431 GSIPVPYVQKYS  442 (563)
Q Consensus       431 G~~P~~~v~~~~  442 (563)
                      ||||++||++..
T Consensus       852 GwFPstYVee~~  863 (865)
T KOG2996|consen  852 GWFPSTYVEEDD  863 (865)
T ss_pred             cccccccccccC
Confidence            999999998754

>KOG4225|consensus

Probab=99.95  E-value=4.8e-28  Score=235.87  Aligned_cols=221  Identities=27%  Similarity=0.404  Sum_probs=158.1

Q ss_pred             eeeeeccccCCCCCCceeeccCCEEEEeeecCCCceeeeeCCceeeccccceeecCCCCCCCCCCCCCccCCCCCCCCCC
Q psy10852        208 ARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETMPFHSSMKMTGTFDPHDRNS  287 (563)
Q Consensus       208 ~~~~~~~~~~a~~~~eLsf~~Gd~v~V~~~~~~~W~~g~~~g~~G~~P~~~ve~~~~~~~~p~~~~~~~~~~~~~~~~~~  287 (563)
                      ++|+|+|  .+....||.|.+||+|.|+++.|++|++|+++|+.|+||.+|||.+....-.            .+     
T Consensus       233 aralf~F--~~qt~kEL~~~kGDIVyI~rkvD~nWyeGEhhGr~GifP~sYvE~~~~~e~~------------qP-----  293 (489)
T KOG4225|consen  233 ARALFDF--EAQTPKELPFNKGDIVYILRKVDQNWYEGEHHGRVGIFPASYVEILTPREKA------------QP-----  293 (489)
T ss_pred             hhheecc--ccCCccccccCCCCEEEEEeeccCceeeeeecceecceechheeecCccccc------------Cc-----
Confidence            5556555  7788999999999999999999999999999999999999999999741100            00     


Q ss_pred             ccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeCCcccCChhhHHhhh
Q psy10852        288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFY  367 (563)
Q Consensus       288 w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~~~~f~sl~~lv~~y  367 (563)
                                           +    + +.  |..                                             
T Consensus       294 ---------------------~----~-~~--P~q---------------------------------------------  300 (489)
T KOG4225|consen  294 ---------------------A----R-PP--PQQ---------------------------------------------  300 (489)
T ss_pred             ---------------------C----C-CC--ccc---------------------------------------------
Confidence                                 0    0 00  000                                             


Q ss_pred             hcccCCCCccccccccceeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEec-CCcEEEEcCCCeEeccCCcc
Q psy10852        368 KVHYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYSEGMS  446 (563)
Q Consensus       368 ~~~~~~~~~l~~P~~~~~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~-~g~~G~~P~~~v~~~~~~~~  446 (563)
                              .+      ....++|+|+|.+..+.||++++|+.|.++.+.+..|++|.+. .++.|+||++||+.+.....
T Consensus       301 --------~~------~~g~a~A~y~F~~~s~~Els~~kge~v~L~r~vd~nw~eG~i~g~~rqgifP~SyVev~~~~~~  366 (489)
T KOG4225|consen  301 --------VL------EQGEAIAKYNFNADSPVELSLRKGERVTLTRQVDENWYEGKIPGTNRQGIFPASYVEVIKSPKL  366 (489)
T ss_pred             --------cc------ccccccccCCCCCCCchhcccccCceEEEEEeccCceeeccccccccccccchhHhhhhhcccc
Confidence                    00      0125899999999999999999999999999999999999865 68999999999998875411


Q ss_pred             cc------------ccccc-------CCC------CCCCCCCCC------CCCccccccc-ccccccceEEeecCCCCCC
Q psy10852        447 IL------------SLRNL-------HLD------SSSHHVPQQ------QTTPVRKTHL-EVKLPAFARVKQVRVPNAY  494 (563)
Q Consensus       447 ~~------------~~~~~-------~~~------~~~~~~~~~------~~~~~~~~~~-~~~~~~~~~~~~~y~~~~~  494 (563)
                      ..            .+.+.       +..      ..+.+.+..      .......+.. ....+-.++|+|.|.|+. 
T Consensus       367 ~~~~~~~~~p~~p~~s~~~~~~~~~s~~~~~~~~~t~~~~q~~~n~~qepr~~~~~~~~~qt~~~~l~yrAly~Y~pqn-  445 (489)
T KOG4225|consen  367 ELPLDYPDLPIPPRSSNELRPLSEDSMKNAWPQTHTQSSTQPPENFPQEPRVTEKNDAHSQTSSEPLKYRALYSYRPQN-  445 (489)
T ss_pred             ccccccCCCCCCcccchhhcccccchhhhcccccccccccCCCCCcccccccccccCcccCCCCCcccceeccccCCCC-
Confidence            00            00000       000      000011100      0000010000 111223489999999665 


Q ss_pred             CCCCeeccCCCEEEEEEeCCCCEEEE--EeCCeeeeecCCceEE
Q psy10852        495 DKTALKLEIGDIIKVTKTNINGQWEG--ELNGKTGHFPFTHVEF  536 (563)
Q Consensus       495 ~~~eL~~~~gd~i~v~~~~~~~w~~g--~~~g~~G~~P~~~v~~  536 (563)
                       ++||-|..||||.|++++|+||+.|  ++.|+-|+||.|||+.
T Consensus       446 -edeLEl~egDii~VmeKcddgWfvGts~rtg~fGtFPgnyV~~  488 (489)
T KOG4225|consen  446 -EDELELREGDIIDVMEKCDDGWFVGTSRRTGKFGTFPGNYVKR  488 (489)
T ss_pred             -chhheeccCCEEeeeecccCcceeccceecccccccCcccccc
Confidence             8899999999999999999999999  8889999999999975

>KOG1264|consensus

Probab=99.93  E-value=5.8e-26  Score=234.63  Aligned_cols=159  Identities=29%  Similarity=0.561  Sum_probs=139.3

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeCCceecC
Q psy10852          5 FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSD   84 (563)
Q Consensus         5 ~~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~s   84 (563)
                      ..+|++++|||..++|++||++|..-+.||+||||.++. ...|+||++.+|+|+|++|.+.    |.. |.++...|.|
T Consensus       642 p~~He~k~W~~as~treqAE~mL~rvp~DGaFLiR~~~~-~nsy~iSfr~~gkikHcRi~rd----Gr~-fvl~t~~Fes  715 (1267)
T KOG1264|consen  642 PNPHESKPWYHASLTREQAEDMLMRVPRDGAFLIRKREG-SNSYAISFRARGKIKHCRINRD----GRH-FVLGTSAFES  715 (1267)
T ss_pred             CCcccCCccccccccHHHHHHHHhhCccCcceEEEeccC-CceEEEEEEEcCcEeEEEEccC----ceE-EEeccHHHHH
Confidence            568999999999999999999999977889999995544 7789999999999999999984    443 9999989999


Q ss_pred             hHhhHHhhhcccCC-Cccccccccc--------------------------------cceeeeecccCCCCCCCCCcCCC
Q psy10852         85 LPSLLAFYKVHYLD-TSPLIKPATK--------------------------------TIEKVIAKYDFDGNDPDDLPFKK  131 (563)
Q Consensus        85 l~~Li~~y~~~~~~-~~~L~~p~~~--------------------------------~~~~~~a~~d~~~~~~~eLs~~~  131 (563)
                      |.+||+||.++++- ...|.+|+..                                +...++|+|+|.++.++||+|.+
T Consensus       716 Lv~lv~yY~k~~lyR~mkLr~PVnee~l~~~~~e~d~~a~~d~~r~pg~yme~n~~~~~vt~kAL~~Yka~r~DELSFpk  795 (1267)
T KOG1264|consen  716 LVELVSYYEKHPLYRKMKLRYPVNEELLERYNTERDINALYDVSRMPGDYMEINPSMPQVTVKALYDYKAKRSDELSFPK  795 (1267)
T ss_pred             HHHHHHHHhcChhhhcccccCcCCHHHHHHhhhhcccccccccccCCCCccccCccccchhhhhhhccccCCcccccccc
Confidence            99999999999885 5667777643                                12458999999999999999999


Q ss_pred             CCEEEEEEecCCCeeEEeeCCCeeeEEecCceeecccc
Q psy10852        132 NDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (563)
Q Consensus       132 Gd~i~vl~~~~~~ww~g~~~~g~~G~fP~~yv~~~~~~  169 (563)
                      |-+|.+++|...+||.|.-.+..++|||+|||+++..+
T Consensus       796 ~aiItnv~keeg~wWrGdYGg~iq~wfPsnyVeei~~~  833 (1267)
T KOG1264|consen  796 GAIITNVSKEEGGWWRGDYGGRIQQWFPSNYVEEISTA  833 (1267)
T ss_pred             cceeEeeeccCCceeecccccceeeeccHHHhhhhccc
Confidence            99999999999999999844456899999999988764

>KOG0790|consensus

Probab=99.93  E-value=3.2e-25  Score=216.22  Aligned_cols=190  Identities=28%  Similarity=0.584  Sum_probs=155.3

Q ss_pred             CCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEe-CCceecChHhh
Q psy10852         10 RNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKI-GDKTFSDLPSL   88 (563)
Q Consensus        10 ~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~-~~~~F~sl~~L   88 (563)
                      +..|||.+|+-.+||.||+....+|+||.|.|++++|+|+|+++.+++|.|++|...++.     |.+ ++..|.++.||
T Consensus         3 s~~wfh~~~~g~~ae~Ll~~~g~dgsfl~r~s~sNp~~fsl~~r~~~~v~hikiq~~~~~-----~~l~~gekfat~~EL   77 (600)
T KOG0790|consen    3 SRRWFHPDLSGVEAETLLKERGVDGSFLARPSESNPGDFSLSVRRGDKVTHIKIQNSGDF-----YDLYGGEKFATLAEL   77 (600)
T ss_pred             chhhcCCCccchhHHHHHHHhccccchhhccccCCCcceeEEEEeCCceEEEEEeecCcc-----ccccCCccccchHHH
Confidence            467999999999999999998888999999999999999999999999999999987643     766 67999999999


Q ss_pred             HHhhhcccCCCccccccccccceeeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEeeCCCeeeEEecCceeeccc
Q psy10852         89 LAFYKVHYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  168 (563)
Q Consensus        89 i~~y~~~~~~~~~L~~p~~~~~~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~~~g~~G~fP~~yv~~~~~  168 (563)
                      |+||+.+.-                            .|.=+.|++|.+-.                             
T Consensus        78 vqyyme~~~----------------------------~lkekng~~ielK~-----------------------------  100 (600)
T KOG0790|consen   78 VQYYMEHHG----------------------------QLKEKNGDVIELKY-----------------------------  100 (600)
T ss_pred             HHHHHhhhH----------------------------HHHhcCCCEEEecC-----------------------------
Confidence            999998731                            12123333333210                             


Q ss_pred             ccccccccccccCCCCCCCCCCCCCccccccccccCccceeeeeccccCCCCCCceeeccCCEEEEeeecCCCceeeeeC
Q psy10852        169 GMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELN  248 (563)
Q Consensus       169 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~a~~~~eLsf~~Gd~v~V~~~~~~~W~~g~~~  248 (563)
                                                                                                      
T Consensus       101 --------------------------------------------------------------------------------  100 (600)
T KOG0790|consen  101 --------------------------------------------------------------------------------  100 (600)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CceeeccccceeecCCCCCCCCCCCCCccCCCCCCCCCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEE
Q psy10852        249 GKTGHFPFTHVEFIPTNETMPFHSSMKMTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVK  328 (563)
Q Consensus       249 g~~G~~P~~~ve~~~~~~~~p~~~~~~~~~~~~~~~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~  328 (563)
                            |.++.+                     + .++.||||+++..+|+.+|......|+||||+|.++||+|+||++
T Consensus       101 ------pl~cAd---------------------p-tserWfHG~LsgkeAekLl~ekgk~gsfLvReSqs~PGdfVlSvr  152 (600)
T KOG0790|consen  101 ------PLNCAD---------------------P-TSERWFHGHLSGKEAEKLLQEKGKHGSFLVRESQSHPGDFVLSVR  152 (600)
T ss_pred             ------CCccCC---------------------c-hhhhhhccCCCchhHHHHHHhcCCCccEEEeccccCCCceEEEEE
Confidence                  000100                     0 123799999999999999988777799999999999999999999


Q ss_pred             eCC---------eeEEEEEeeecCCCcceeEEeCC-cccCChhhHHhhhhcccCCC
Q psy10852        329 ENN---------KVSHYIINKITNTEQQTCYKIGD-KTFSDLPSLLAFYKVHYLDT  374 (563)
Q Consensus       329 ~~~---------~v~h~~I~~~~~~~~~~~~~i~~-~~f~sl~~lv~~y~~~~~~~  374 (563)
                      .++         +|.|..|...+..     |.+++ ..|+|+.+||+||+.++.-.
T Consensus       153 Tdd~~~~~~~~~kVtHvmI~~q~~k-----ydVGgge~F~sltdLidhykknpmvE  203 (600)
T KOG0790|consen  153 TDDKKESNDSKLKVTHVMIRCQEGK-----YDVGGGERFDSLTDLVEHYKKNPMVE  203 (600)
T ss_pred             cCCcccCCCCccceEEEEEEecccc-----cccCCccccchHHHHHHHhccCchhh
Confidence            976         8999999987643     88875 89999999999999988654

>KOG2996|consensus

Probab=99.92  E-value=1.9e-25  Score=223.58  Aligned_cols=153  Identities=30%  Similarity=0.583  Sum_probs=133.5

Q ss_pred             CCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeC-CceecChH
Q psy10852          8 HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDLP   86 (563)
Q Consensus         8 ~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~sl~   86 (563)
                      +..++||.|.|-|.+||..|++.. +|+||||.+....+.|+||+.++..|+|++|...++     .|.|. ...|.|+.
T Consensus       682 ~s~~~WyaG~MERaqaes~Lk~~~-ngT~LVR~r~kea~e~AISikynnevKHikI~~~dg-----~~~i~E~k~F~sl~  755 (865)
T KOG2996|consen  682 YSEFPWYAGEMERAQAESTLKNRP-NGTYLVRYRTKEAKEFAISIKYNNEVKHIKIETNDG-----KVHITEDKKFNSLV  755 (865)
T ss_pred             hhhhhhhcchHhhhhhhhHhhcCC-CceEEEEecccchhheeEEEEeccccceEEEEecCC-----eEEechhhhhhhHH
Confidence            344689999999999999998855 599999999887889999999999999999998743     26664 59999999


Q ss_pred             hhHHhhhcccCC------Cccccccccc--------------------cceeeeecccCCCCCCCCCcCCCCCEEEEEEe
Q psy10852         87 SLLAFYKVHYLD------TSPLIKPATK--------------------TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSK  140 (563)
Q Consensus        87 ~Li~~y~~~~~~------~~~L~~p~~~--------------------~~~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~  140 (563)
                      |||+||+.|+|.      .+.|+.|+..                    .+-.++|.|||.+++-.+|||+.||+|.++.+
T Consensus       756 ELVeyYq~~sLke~Fk~LDTtLk~Pyke~e~sa~~~~~~~~~sv~s~~~~g~AvarYdf~ard~~eLSlk~GDvV~i~~k  835 (865)
T KOG2996|consen  756 ELVEYYQSHSLKEIFKALDTTLKFPYKEPEHSAGQRGNRAGNSVLSPKVVGTAVARYDFCARDMRELSLKEGDVVKIYDK  835 (865)
T ss_pred             HHHHHHHhccHHHHHHHhhhhhcCCCcChhhhhhhccccccccccCcceeeeeeeccccCCCchhhcccccCCEEEEehh
Confidence            999999999874      5678888762                    24558999999999999999999999999998


Q ss_pred             c--CCCeeEEeeCCCeeeEEecCceeecc
Q psy10852        141 D--EEHWWTAQNISGEVGSIPVPYVQKYS  167 (563)
Q Consensus       141 ~--~~~ww~g~~~~g~~G~fP~~yv~~~~  167 (563)
                      .  |.+||.|. .+|+.||||++||++..
T Consensus       836 ~g~d~GWWkGe-vngrvGwFPstYVee~~  863 (865)
T KOG2996|consen  836 VGEDQGWWKGE-VNGRVGWFPSTYVEEDD  863 (865)
T ss_pred             ccccCceecce-ecCcccccccccccccC
Confidence            6  46999997 99999999999999875

>KOG3601|consensus

Probab=99.91  E-value=1.8e-25  Score=198.78  Aligned_cols=203  Identities=24%  Similarity=0.411  Sum_probs=173.6

Q ss_pred             eccccCCCCCCceeeccCCEEEEeeecCC-CceeeeeCCceeeccccceeecCCCCCCCCCCCCCccCCCCCCCCCCccc
Q psy10852        212 QVRVPNAYDKTALKLEIGDIIKVTKTNIN-GQWEGELNGKTGHFPFTHVEFIPTNETMPFHSSMKMTGTFDPHDRNSWYF  290 (563)
Q Consensus       212 ~~~~~~a~~~~eLsf~~Gd~v~V~~~~~~-~W~~g~~~g~~G~~P~~~ve~~~~~~~~p~~~~~~~~~~~~~~~~~~w~~  290 (563)
                      +.+...+...+||+|.+|+.|.++...|+ +|...+++|..|++|.||.+...                      ..|++
T Consensus         5 a~n~f~a~i~dELsFlkg~~lk~l~~~d~~nw~~ael~g~~g~~P~Nai~~~~----------------------~~wve   62 (222)
T KOG3601|consen    5 AKNDFLAGIRDELSFLKGDNLKILNMEDDINWYKAELDGPEGFIPKNAIRMKP----------------------HEWVE   62 (222)
T ss_pred             hhhhhhhcCcccceeecCCceEecchHHhhhhhhHhhcCccccCccccccccc----------------------cccee
Confidence            34445677889999999999999988764 68899999999999999997643                      28999


Q ss_pred             cccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeCCcccCChhhHHhhhhcc
Q psy10852        291 GMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVH  370 (563)
Q Consensus       291 g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~~~~f~sl~~lv~~y~~~  370 (563)
                      +.++|..|+.++.. ...|.|++|.++++||.|++++++.+.|.|+.+.+...+    +|......|.++.+|++||+++
T Consensus        63 ~~i~r~~ae~~l~~-~~~G~fl~r~s~sSPg~fsgsvr~~d~vqhfkvvrpa~~----k~~lw~skfnslnplv~Y~rt~  137 (222)
T KOG3601|consen   63 GLIPRPLAEDLLSK-KRDGDFLIRLSESSPGDFSGSVRFPDGVQHFKVVRPAFG----KYFLWSSKFNSLNPLVSYHRTA  137 (222)
T ss_pred             cccccchhhhhhhc-cCcchhhhhhhhcCcccccccccCCCCceeccccccCcc----ccccchhhccCCCCCcccCccc
Confidence            99999999999998 777999999999999999999999999999999876555    3677778999999999999987


Q ss_pred             cCCCC---------c--cccccccceeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeE
Q psy10852        371 YLDTS---------P--LIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ  439 (563)
Q Consensus       371 ~~~~~---------~--l~~P~~~~~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~  439 (563)
                      +....         +  +..|.+....+..++|+|.++.+.+|.|++||++.|+++.+.-||.|+ ..|+.|+||++||.
T Consensus       138 s~~r~~qi~l~d~~~~~~~~~~~~~~~yqQa~~df~~~pp~ql~f~~gq~~~v~~~ss~~ww~Gs-~lg~agiFpagyv~  216 (222)
T KOG3601|consen  138 SQSRNQQIFLRDMEPPPAPLPPAPTNYYQQALYDFQPQPPGQLAFRRGQQIQVLDSSSPFWWFGS-KLGRAGIFPAGYVA  216 (222)
T ss_pred             ccccceeeeecccccccccCCCCccchhhhhcCCCCCCCchhhccccCCcceeecCCCcchhhcc-ccCceeeecCcccc
Confidence            66431         1  112222346688999999999999999999999999999999999997 78999999999986


Q ss_pred             ecc
Q psy10852        440 KYS  442 (563)
Q Consensus       440 ~~~  442 (563)
                      +..
T Consensus       217 p~d  219 (222)
T KOG3601|consen  217 PSD  219 (222)
T ss_pred             ccc
Confidence            543

>KOG4637|consensus

Probab=99.91  E-value=4e-25  Score=210.46  Aligned_cols=97  Identities=28%  Similarity=0.545  Sum_probs=84.2

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeC-CceecC
Q psy10852          6 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSD   84 (563)
Q Consensus         6 ~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~s   84 (563)
                      |.+..++||||+|+|+++...|.+.++ |+||||+-++-+|.|+|+++.++.++-++|...+..     |.+. .-.|.|
T Consensus        18 ~~L~~a~WYWgdisReev~~~L~d~PD-GsFlVRdAstm~GdYTLtl~k~g~~KLikI~h~DgK-----yGF~d~ltf~S   91 (464)
T KOG4637|consen   18 DELQDAEWYWGDISREEVNKKLRDQPD-GSFLVRDASTMQGDYTLTLRKGGNNKLIKIVHRDGK-----YGFSDPLTFNS   91 (464)
T ss_pred             hhhhhccccccccCHHHHHHHhcCCCC-CcEEeeccccCCCceEEEEecCCccceeeeEEecCc-----cCCCCchhhHH
Confidence            457788999999999999999988664 999999987789999999999999999999987654     5554 479999


Q ss_pred             hHhhHHhhhcccCC------Cccccccccc
Q psy10852         85 LPSLLAFYKVHYLD------TSPLIKPATK  108 (563)
Q Consensus        85 l~~Li~~y~~~~~~------~~~L~~p~~~  108 (563)
                      +.+||+||+..+|.      .+.|++|+.+
T Consensus        92 VVelIn~yr~~SL~~yN~~LDvrLlyPVs~  121 (464)
T KOG4637|consen   92 VVELINHYRNESLAQYNPKLDVRLLYPVSR  121 (464)
T ss_pred             HHHHHHHHhhhHHHhhCcccceeeechHHH
Confidence            99999999998775      4678888866

>KOG3601|consensus

Probab=99.83  E-value=2.5e-21  Score=172.42  Aligned_cols=156  Identities=24%  Similarity=0.425  Sum_probs=134.1

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeCCceecCh
Q psy10852          6 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDL   85 (563)
Q Consensus         6 ~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~sl   85 (563)
                      ......+||+|.|+|..||.+|+. ..+|+||+|.++..+|.|.+|+++...|.||++.+...+    +|++-...|.++
T Consensus        53 i~~~~~~wve~~i~r~~ae~~l~~-~~~G~fl~r~s~sSPg~fsgsvr~~d~vqhfkvvrpa~~----k~~lw~skfnsl  127 (222)
T KOG3601|consen   53 IRMKPHEWVEGLIPRPLAEDLLSK-KRDGDFLIRLSESSPGDFSGSVRFPDGVQHFKVVRPAFG----KYFLWSSKFNSL  127 (222)
T ss_pred             cccccccceecccccchhhhhhhc-cCcchhhhhhhhcCcccccccccCCCCceeccccccCcc----ccccchhhccCC
Confidence            333456899999999999999998 556999999999999999999999999999999987665    599988899999


Q ss_pred             HhhHHhhhcccCCC---------c--cccccccccceeeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEeeCCCe
Q psy10852         86 PSLLAFYKVHYLDT---------S--PLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGE  154 (563)
Q Consensus        86 ~~Li~~y~~~~~~~---------~--~L~~p~~~~~~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~~~g~  154 (563)
                      .+|++||+++....         .  .+..|.........++|||.++.+.+|.|++|+.+.|+...+..||.|. +.|+
T Consensus       128 nplv~Y~rt~s~~r~~qi~l~d~~~~~~~~~~~~~~~yqQa~~df~~~pp~ql~f~~gq~~~v~~~ss~~ww~Gs-~lg~  206 (222)
T KOG3601|consen  128 NPLVSYHRTASQSRNQQIFLRDMEPPPAPLPPAPTNYYQQALYDFQPQPPGQLAFRRGQQIQVLDSSSPFWWFGS-KLGR  206 (222)
T ss_pred             CCCcccCcccccccceeeeecccccccccCCCCccchhhhhcCCCCCCCchhhccccCCcceeecCCCcchhhcc-ccCc
Confidence            99999999876531         1  1222222446678999999999999999999999999999999999997 8999


Q ss_pred             eeEEecCceeecc
Q psy10852        155 VGSIPVPYVQKYS  167 (563)
Q Consensus       155 ~G~fP~~yv~~~~  167 (563)
                      .|+||++||...+
T Consensus       207 agiFpagyv~p~d  219 (222)
T KOG3601|consen  207 AGIFPAGYVAPSD  219 (222)
T ss_pred             eeeecCccccccc
Confidence            9999999998664

>smart00252 SH2 Src homology 2 domains

Probab=99.81  E-value=1e-19  Score=146.47  Aligned_cols=82  Identities=37%  Similarity=0.710  Sum_probs=74.0

Q ss_pred             CCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeCC-ceecChHhhH
Q psy10852         11 NSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD-KTFSDLPSLL   89 (563)
Q Consensus        11 ~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~-~~F~sl~~Li   89 (563)
                      ++||||.|+|++||++|.+.+ +|+||||.|++.++.|+||++.++.++||+|....++    .|.+.+ ..|.||.+||
T Consensus         1 ~~w~~g~i~r~~Ae~lL~~~~-~G~FLvR~s~~~~~~~~Lsv~~~~~~~h~~I~~~~~~----~~~l~~~~~F~sl~eLI   75 (84)
T smart00252        1 QPWYHGFISREEAEKLLKNEG-DGDFLVRDSESEPGDYVLSVRVKGKVKHYRIRRNEDG----KFYLDGGRKFPSLVELV   75 (84)
T ss_pred             CCeecccCCHHHHHHHHhcCC-CcEEEEEcCCCCCCCEEEEEEECCEEEEEEEEECCCC----cEEECCCCccCCHHHHH
Confidence            489999999999999998855 6999999999878999999999999999999987643    388876 9999999999


Q ss_pred             HhhhcccC
Q psy10852         90 AFYKVHYL   97 (563)
Q Consensus        90 ~~y~~~~~   97 (563)
                      +||+.+++
T Consensus        76 ~~y~~~~~   83 (84)
T smart00252       76 EHYQKNSL   83 (84)
T ss_pred             HHHhhCCC
Confidence            99998865

Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae.

>KOG4278|consensus

Probab=99.80  E-value=2e-19  Score=183.42  Aligned_cols=203  Identities=27%  Similarity=0.453  Sum_probs=154.8

Q ss_pred             cChHhhHHhhhcccCCCccccccccccceeeeecccCCCCCCCCCcCCCCCEEEEEEec-CCCeeEEeeCCCeeeEEecC
Q psy10852         83 SDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD-EEHWWTAQNISGEVGSIPVP  161 (563)
Q Consensus        83 ~sl~~Li~~y~~~~~~~~~L~~p~~~~~~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~-~~~ww~g~~~~g~~G~fP~~  161 (563)
                      .++.+-|.+-++..|    |.++-.+....++|+|||.+..++.|++.+|+.+.|+.-. +.+|..++..+|+ ||+|+|
T Consensus        67 q~lsea~RwsSkEnL----la~~sendpNLFVALYDFvasGdntLSitKGeklRvLGYN~NgEWcEartKNGq-GWVPSN  141 (1157)
T KOG4278|consen   67 QSLSEAIRWSSKENL----LACSSENDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNKNGEWCEARTKNGQ-GWVPSN  141 (1157)
T ss_pred             chhHHHHhccchhhh----hcccccCCCceeEeeeeeeccccceeeeecCceEEEeeecCCCcceeecccCCC-cccccc
Confidence            345555555433322    2223333445799999999999999999999999999875 4678888877776 999999


Q ss_pred             ceeecccccccccccccccCCCCCCCCCCCCCccccccccccCccceeeeeccccCCCCCCceeeccCCEEEEeeecCCC
Q psy10852        162 YVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNING  241 (563)
Q Consensus       162 yv~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~a~~~~eLsf~~Gd~v~V~~~~~~~  241 (563)
                      |+.++..                                                                         
T Consensus       142 yItPvNS-------------------------------------------------------------------------  148 (1157)
T KOG4278|consen  142 YITPVNS-------------------------------------------------------------------------  148 (1157)
T ss_pred             ccccccc-------------------------------------------------------------------------
Confidence            9877642                                                                         


Q ss_pred             ceeeeeCCceeeccccceeecCCCCCCCCCCCCCccCCCCCCCCCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCc
Q psy10852        242 QWEGELNGKTGHFPFTHVEFIPTNETMPFHSSMKMTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILG  321 (563)
Q Consensus       242 W~~g~~~g~~G~~P~~~ve~~~~~~~~p~~~~~~~~~~~~~~~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g  321 (563)
                                                               .+...||||.++|..|+.+|.+. ..|+||||+|++++|
T Consensus       149 -----------------------------------------LeKhsWYHGpvSRsaaEy~LsSg-InGSFLVRESEsSpg  186 (1157)
T KOG4278|consen  149 -----------------------------------------LEKHSWYHGPVSRSAAEYILSSG-INGSFLVRESESSPG  186 (1157)
T ss_pred             -----------------------------------------hhhcccccCccccchhhhhhhcC-cccceEEeeccCCCc
Confidence                                                     12338999999999999999876 449999999999999


Q ss_pred             ceEEEEEeCCeeEEEEEeeecCCCcceeEEeCCcccCChhhHHhhhhcccCCC-CccccccccceeeEEEeecccCCCCC
Q psy10852        322 NYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDT-SPLIKPATKTIEKVIAKYDFDGNDPD  400 (563)
Q Consensus       322 ~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~~~~f~sl~~lv~~y~~~~~~~-~~l~~P~~~~~~~~~a~~~y~~~~~~  400 (563)
                      .|+++++++++|.||+|.....+  .. |......|.+|.+||.|+....+.. +.|-+|.++. .... +|.-.+.. +
T Consensus       187 Q~sISlRyeGRVyHYRINt~~dg--K~-yvt~EsrF~TLaELVHHHStvADGLittLhYPApK~-nKpt-vygvSPn~-D  260 (1157)
T KOG4278|consen  187 QYSISLRYEGRVYHYRINTDNDG--KM-YVTQESRFRTLAELVHHHSTVADGLITTLHYPAPKK-NKPT-VYGVSPNA-D  260 (1157)
T ss_pred             ceeEEEEecceEEEEEeeccCCc--cE-EEeehhhhhHHHHHHhhccccccceeEeeeccCccC-CCCc-eeeecCCc-c
Confidence            99999999999999999886654  22 4445689999999999999988776 5577888762 2222 56555554 7


Q ss_pred             CCCCCCCCEEE
Q psy10852        401 DLPFKKNDILI  411 (563)
Q Consensus       401 el~~~~g~~v~  411 (563)
                      +..+.+-|+++
T Consensus       261 kWEmeRtdItM  271 (1157)
T KOG4278|consen  261 KWEMERTDITM  271 (1157)
T ss_pred             hhhccchheee
Confidence            77777777764

>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []

Probab=99.79  E-value=3.7e-19  Score=140.65  Aligned_cols=76  Identities=41%  Similarity=0.773  Sum_probs=69.1

Q ss_pred             ccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeC-CceecChHhhHHh
Q psy10852         13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDLPSLLAF   91 (563)
Q Consensus        13 w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~sl~~Li~~   91 (563)
                      ||||.|+|++||++|++...+|+||||.|.+.+|.|+|||+.+++|+||+|.+..++    .|.+. +..|+||.+||+|
T Consensus         1 W~~g~isr~~Ae~~L~~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~----~~~~~~~~~F~sl~~LV~~   76 (77)
T PF00017_consen    1 WFHGFISRQEAERLLMQGKPDGTFLVRPSSSKPGKYVLSVRFDGKVKHFRINRTENG----GYFLSDGKKFPSLSDLVEH   76 (77)
T ss_dssp             TBEESSHHHHHHHHHHTTSSTTEEEEEEESSSTTSEEEEEEETTEEEEEEEEEETTS----EEESSTSSEBSSHHHHHHH
T ss_pred             CcCCCCCHHHHHHHHHhcCCCCeEEEEeccccccccccccccccccEEEEEEecCCc----eEEccCCCcCCCHHHHHHh
Confidence            999999999999999985566999999999888999999999999999999998765    36664 5889999999999


Q ss_pred             h
Q psy10852         92 Y   92 (563)
Q Consensus        92 y   92 (563)
                      |
T Consensus        77 y   77 (77)
T PF00017_consen   77 Y   77 (77)
T ss_dssp             H
T ss_pred             C
Confidence            8

Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....

>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr)

Probab=99.79  E-value=5.3e-19  Score=145.71  Aligned_cols=81  Identities=41%  Similarity=0.808  Sum_probs=71.5

Q ss_pred             CccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeC-CceecChHhhHH
Q psy10852         12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDLPSLLA   90 (563)
Q Consensus        12 ~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~sl~~Li~   90 (563)
                      +||||.|+|++||++|++ ..+|+||||.|.+.++.|+||++.+++++||+|.+..++    .+... +..|+||.+||+
T Consensus         1 ~w~~g~i~r~~Ae~~L~~-~~~G~FLiR~s~~~~~~~~Lsv~~~~~v~H~~I~~~~~~----~~~~~~~~~f~sl~eLv~   75 (94)
T cd00173           1 PWYHGPISREEAEELLKK-KPDGTFLVRDSESSPGDYVLSVRVKGKVKHYRIERTDDG----YYLLGEGRSFPSLPELIE   75 (94)
T ss_pred             CccccCCCHHHHHHHHhc-CCCceEEEEecCCCCCCEEEEEEECCEEEEEEEEECCCC----eEEecCCCccCCHHHHHH
Confidence            699999999999999987 456999999999778999999999999999999997765    13333 789999999999


Q ss_pred             hhhcccC
Q psy10852         91 FYKVHYL   97 (563)
Q Consensus        91 ~y~~~~~   97 (563)
                      ||+.+++
T Consensus        76 ~y~~~~~   82 (94)
T cd00173          76 HYQKNPL   82 (94)
T ss_pred             HHhhCcc
Confidence            9999875

SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.

>KOG0197|consensus

Probab=99.65  E-value=2.8e-16  Score=160.07  Aligned_cols=161  Identities=35%  Similarity=0.679  Sum_probs=130.7

Q ss_pred             ceeeeecccCCCCCCCCCcCCCCCE-EEEEEecCCCeeEEeeC-CCeeeEEecCceeecccccccccccccccCCCCCCC
Q psy10852        110 IEKVIAKYDFDGNDPDDLPFKKNDI-LIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHV  187 (563)
Q Consensus       110 ~~~~~a~~d~~~~~~~eLs~~~Gd~-i~vl~~~~~~ww~g~~~-~g~~G~fP~~yv~~~~~~~~~~~~~~~~~~g~~~~~  187 (563)
                      ...++|+|||.+....+|+|.+||. ..+++..+..||.+++. .+..|++|.|||.+....    +             
T Consensus        11 ~~~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~~~~~----~-------------   73 (468)
T KOG0197|consen   11 ETIVVALYDYASRTPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVARNRGS----P-------------   73 (468)
T ss_pred             cceEEEeccccCCCccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeeccccC----C-------------
Confidence            4578999999999999999999999 88888888999999876 788889999888765310    0             


Q ss_pred             CCCCCCccccccccccCccceeeeeccccCCCCCCceeeccCCEEEEeeecCCCceeeeeCCceeeccccceeecCCCCC
Q psy10852        188 PQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET  267 (563)
Q Consensus       188 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~a~~~~eLsf~~Gd~v~V~~~~~~~W~~g~~~g~~G~~P~~~ve~~~~~~~  267 (563)
                                                                                                      
T Consensus        74 --------------------------------------------------------------------------------   73 (468)
T KOG0197|consen   74 --------------------------------------------------------------------------------   73 (468)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCccCCCCCCCCCCccccccCHHHHHHHHhc-CCCCCcEEEEecCCCCcceEEEEEeCC------eeEEEEEee
Q psy10852        268 MPFHSSMKMTGTFDPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENN------KVSHYIINK  340 (563)
Q Consensus       268 ~p~~~~~~~~~~~~~~~~~~w~~g~~sr~~A~~~l~~-~~~~G~FlvR~S~~~~g~~~ls~~~~~------~v~h~~I~~  340 (563)
                                 .....+..+||++.++|.+|++.|.. +...|+||||+|++.+|+|+++++...      .|+|++|..
T Consensus        74 -----------~~~~l~~~~Wf~~~isR~~ae~~ll~p~~~~G~flvR~se~~~g~yslsv~~~~~~~~~~~v~hyri~~  142 (468)
T KOG0197|consen   74 -----------AFIKLSDEPWFFGKISREEAERQLLAPENKEGAFLVRESESDKGDYSLSVREGDSGGLGAKVKHYRIRQ  142 (468)
T ss_pred             -----------CccccccCCchhccccHHHHHHhhcCCCCCccceeeecccCCcCCeeEEEEeccccCCccceeeeeeeE
Confidence                       00112345999999999999965554 567799999999999999999999866      899999999


Q ss_pred             ecCCCcceeEE--eC-CcccCChhhHHhhhhcccCCC-Cccccccc
Q psy10852        341 ITNTEQQTCYK--IG-DKTFSDLPSLLAFYKVHYLDT-SPLIKPAT  382 (563)
Q Consensus       341 ~~~~~~~~~~~--i~-~~~f~sl~~lv~~y~~~~~~~-~~l~~P~~  382 (563)
                      .+.+    ++.  ++ ...|+++.+||+||+.+.... +.+..|+.
T Consensus       143 ~~~~----~~~~~~~~~~~F~~l~~lv~~~~~~~~gl~~~l~~p~~  184 (468)
T KOG0197|consen  143 LDGG----GLYPYIDERELFSSLQQLVNYYSKNADGLCTRLRDPCS  184 (468)
T ss_pred             cCCC----CeecCCCHHHhhhhHHHHHhhhhccCcchhhcccCchh
Confidence            8765    355  65 489999999999999988776 34556654

>KOG0790|consensus

Probab=99.60  E-value=1.1e-15  Score=150.01  Aligned_cols=93  Identities=30%  Similarity=0.605  Sum_probs=79.6

Q ss_pred             CCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECC---------eEEEEEEEEecCCCcceEEEeCC-
Q psy10852         10 RNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENN---------KVSHYIINKITNTEQQTCYKIGD-   79 (563)
Q Consensus        10 ~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~---------~v~h~~I~~~~~~~~~~~~~~~~-   79 (563)
                      ++.||||.|+-.+||.||.....+|+||||+|.+.||+|+|||+.+.         +|.|..|+..+.     +|-+++ 
T Consensus       109 serWfHG~LsgkeAekLl~ekgk~gsfLvReSqs~PGdfVlSvrTdd~~~~~~~~~kVtHvmI~~q~~-----kydVGgg  183 (600)
T KOG0790|consen  109 SERWFHGHLSGKEAEKLLQEKGKHGSFLVRESQSHPGDFVLSVRTDDKKESNDSKLKVTHVMIRCQEG-----KYDVGGG  183 (600)
T ss_pred             hhhhhccCCCchhHHHHHHhcCCCccEEEeccccCCCceEEEEEcCCcccCCCCccceEEEEEEeccc-----ccccCCc
Confidence            46799999999999999977667799999999999999999999866         899999998653     399965 


Q ss_pred             ceecChHhhHHhhhcccCCC-----cccccccc
Q psy10852         80 KTFSDLPSLLAFYKVHYLDT-----SPLIKPAT  107 (563)
Q Consensus        80 ~~F~sl~~Li~~y~~~~~~~-----~~L~~p~~  107 (563)
                      ..|.||.+||+||+++++-.     ..|..|+.
T Consensus       184 e~F~sltdLidhykknpmvEt~gtvv~LrqP~n  216 (600)
T KOG0790|consen  184 ERFDSLTDLVEHYKKNPMVETLGTVVYLRQPLN  216 (600)
T ss_pred             cccchHHHHHHHhccCchhhhcceeEEeecccc
Confidence            89999999999999998741     23555654

>KOG4278|consensus

Probab=99.59  E-value=2.9e-15  Score=153.43  Aligned_cols=125  Identities=28%  Similarity=0.475  Sum_probs=97.3

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeCCceecC
Q psy10852          5 FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSD   84 (563)
Q Consensus         5 ~~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~s   84 (563)
                      .+.++...||||.++|..||.+|.. ..+|+||||+|++.+|.|+||+|+.++|.||+|....+  |.. |...+..|.+
T Consensus       146 vNSLeKhsWYHGpvSRsaaEy~LsS-gInGSFLVRESEsSpgQ~sISlRyeGRVyHYRINt~~d--gK~-yvt~EsrF~T  221 (1157)
T KOG4278|consen  146 VNSLEKHSWYHGPVSRSAAEYILSS-GINGSFLVRESESSPGQYSISLRYEGRVYHYRINTDND--GKM-YVTQESRFRT  221 (1157)
T ss_pred             ccchhhcccccCccccchhhhhhhc-CcccceEEeeccCCCcceeEEEEecceEEEEEeeccCC--ccE-EEeehhhhhH
Confidence            4567778999999999999999977 45699999999999999999999999999999997654  343 7777899999


Q ss_pred             hHhhHHhhhcccCC-CccccccccccceeeeecccCCCCCCCCCcCCCCCEEE
Q psy10852         85 LPSLLAFYKVHYLD-TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILI  136 (563)
Q Consensus        85 l~~Li~~y~~~~~~-~~~L~~p~~~~~~~~~a~~d~~~~~~~eLs~~~Gd~i~  136 (563)
                      |.|||.||+.+..+ -|.|.+|.++....-  +|...+ +.+..-+.+-||++
T Consensus       222 LaELVHHHStvADGLittLhYPApK~nKpt--vygvSP-n~DkWEmeRtdItM  271 (1157)
T KOG4278|consen  222 LAELVHHHSTVADGLITTLHYPAPKKNKPT--VYGVSP-NADKWEMERTDITM  271 (1157)
T ss_pred             HHHHHhhccccccceeEeeeccCccCCCCc--eeeecC-Ccchhhccchheee
Confidence            99999999999887 456778887733221  232222 22555555656544

>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []

Probab=99.50  E-value=1.1e-13  Score=109.18  Aligned_cols=76  Identities=41%  Similarity=0.773  Sum_probs=69.8

Q ss_pred             ccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeC-CcccCChhhHHhh
Q psy10852        288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDLPSLLAF  366 (563)
Q Consensus       288 w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~-~~~f~sl~~lv~~  366 (563)
                      ||+|.|+|++|+++|.....+|+||||.|.+.++.|+|+++..++++|++|.....+    +|.+. ...|+|+.+||+|
T Consensus         1 W~~g~isr~~Ae~~L~~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~----~~~~~~~~~F~sl~~LV~~   76 (77)
T PF00017_consen    1 WFHGFISRQEAERLLMQGKPDGTFLVRPSSSKPGKYVLSVRFDGKVKHFRINRTENG----GYFLSDGKKFPSLSDLVEH   76 (77)
T ss_dssp             TBEESSHHHHHHHHHHTTSSTTEEEEEEESSSTTSEEEEEEETTEEEEEEEEEETTS----EEESSTSSEBSSHHHHHHH
T ss_pred             CcCCCCCHHHHHHHHHhcCCCCeEEEEeccccccccccccccccccEEEEEEecCCc----eEEccCCCcCCCHHHHHHh
Confidence            999999999999999996777999999999989999999999999999999998776    36675 4889999999999


Q ss_pred             h
Q psy10852        367 Y  367 (563)
Q Consensus       367 y  367 (563)
                      |
T Consensus        77 y   77 (77)
T PF00017_consen   77 Y   77 (77)
T ss_dssp             H
T ss_pred             C
Confidence            8

Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....

>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A

Probab=99.49  E-value=3.5e-14  Score=100.58  Aligned_cols=49  Identities=43%  Similarity=1.011  Sum_probs=44.9

Q ss_pred             EeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeE
Q psy10852        390 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ  439 (563)
Q Consensus       390 a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~  439 (563)
                      |+|+|.++.++||+|++||+|.|+.+.+++||+|++ +|+.|+||++||+
T Consensus         1 Al~~y~~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~-~g~~G~~P~~yV~   49 (49)
T PF14604_consen    1 ALYDYEAQDPDELSFKKGDVITVLEKSDDGWWYGRN-TGRTGLFPANYVE   49 (49)
T ss_dssp             ESSCBCSSSTTB-EB-TTEEEEEEEESSTSEEEEEE-TTEEEEEEGGGEE
T ss_pred             CCccCCCCCcCEeeEcCCCEEEEEEeCCCCEEEEEE-CCEEEEECHHhCC
Confidence            789999999999999999999999999999999985 9999999999996

...

>smart00252 SH2 Src homology 2 domains

Probab=99.49  E-value=2.1e-13  Score=109.60  Aligned_cols=81  Identities=37%  Similarity=0.716  Sum_probs=72.9

Q ss_pred             CccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeCC-cccCChhhHHh
Q psy10852        287 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD-KTFSDLPSLLA  365 (563)
Q Consensus       287 ~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~~-~~f~sl~~lv~  365 (563)
                      +||+|.++|++|+.+|.+.. +|+||||.|++.++.|+|+++..+.++|+.|.....+    +|.+.+ ..|+++.+||+
T Consensus         2 ~w~~g~i~r~~Ae~lL~~~~-~G~FLvR~s~~~~~~~~Lsv~~~~~~~h~~I~~~~~~----~~~l~~~~~F~sl~eLI~   76 (84)
T smart00252        2 PWYHGFISREEAEKLLKNEG-DGDFLVRDSESEPGDYVLSVRVKGKVKHYRIRRNEDG----KFYLDGGRKFPSLVELVE   76 (84)
T ss_pred             CeecccCCHHHHHHHHhcCC-CcEEEEEcCCCCCCCEEEEEEECCEEEEEEEEECCCC----cEEECCCCccCCHHHHHH
Confidence            79999999999999998855 7999999999989999999999999999999987642    288876 99999999999


Q ss_pred             hhhcccC
Q psy10852        366 FYKVHYL  372 (563)
Q Consensus       366 ~y~~~~~  372 (563)
                      ||+.+++
T Consensus        77 ~y~~~~~   83 (84)
T smart00252       77 HYQKNSL   83 (84)
T ss_pred             HHhhCCC
Confidence            9987654

Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae.

>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A

Probab=99.48  E-value=6.1e-14  Score=99.32  Aligned_cols=49  Identities=35%  Similarity=0.510  Sum_probs=43.0

Q ss_pred             EeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceE
Q psy10852        485 VKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE  535 (563)
Q Consensus       485 ~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~  535 (563)
                      |+++|.  +.+++||+|++||+|.|+++.++|||+|+.+|++|+||++||+
T Consensus         1 Al~~y~--~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~   49 (49)
T PF14604_consen    1 ALYDYE--AQDPDELSFKKGDVITVLEKSDDGWWYGRNTGRTGLFPANYVE   49 (49)
T ss_dssp             ESSCBC--SSSTTB-EB-TTEEEEEEEESSTSEEEEEETTEEEEEEGGGEE
T ss_pred             CCccCC--CCCcCEeeEcCCCEEEEEEeCCCCEEEEEECCEEEEECHHhCC
Confidence            578888  4458899999999999999989999999999999999999996

...

>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr)

Probab=99.45  E-value=5.3e-13  Score=109.81  Aligned_cols=80  Identities=40%  Similarity=0.774  Sum_probs=72.0

Q ss_pred             CccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeC--CcccCChhhHH
Q psy10852        287 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG--DKTFSDLPSLL  364 (563)
Q Consensus       287 ~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~--~~~f~sl~~lv  364 (563)
                      +||||.|+|++|+.+|.+ ..+|+||||.|.+.++.|+||++..+.++|+.|...+.+     +.+.  ...|+|+.+||
T Consensus         1 ~w~~g~i~r~~Ae~~L~~-~~~G~FLiR~s~~~~~~~~Lsv~~~~~v~H~~I~~~~~~-----~~~~~~~~~f~sl~eLv   74 (94)
T cd00173           1 PWYHGPISREEAEELLKK-KPDGTFLVRDSESSPGDYVLSVRVKGKVKHYRIERTDDG-----YYLLGEGRSFPSLPELI   74 (94)
T ss_pred             CccccCCCHHHHHHHHhc-CCCceEEEEecCCCCCCEEEEEEECCEEEEEEEEECCCC-----eEEecCCCccCCHHHHH
Confidence            599999999999999998 567999999999889999999999999999999987665     4443  78999999999


Q ss_pred             hhhhcccC
Q psy10852        365 AFYKVHYL  372 (563)
Q Consensus       365 ~~y~~~~~  372 (563)
                      +||+.+.+
T Consensus        75 ~~y~~~~~   82 (94)
T cd00173          75 EHYQKNPL   82 (94)
T ss_pred             HHHhhCcc
Confidence            99998875

SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.

>KOG0197|consensus

Probab=99.41  E-value=4.1e-13  Score=137.11  Aligned_cols=101  Identities=36%  Similarity=0.636  Sum_probs=84.1

Q ss_pred             CCCCCCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEecCCCCcceEEEEEECC------eEEEEEEEEecCCCcceEEE
Q psy10852          4 TFDPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENN------KVSHYIINKITNTEQQTCYK   76 (563)
Q Consensus         4 ~~~~~~~~~w~~g~i~r~~ae~~L~~-~~~~G~FLvR~s~~~~~~~~lsv~~~~------~v~h~~I~~~~~~~~~~~~~   76 (563)
                      ....++.++||||.|+|++||+.|.. ....|+||||+|++.+|+|+|||+...      .|+||+|.+.+++    .|.
T Consensus        74 ~~~~l~~~~Wf~~~isR~~ae~~ll~p~~~~G~flvR~se~~~g~yslsv~~~~~~~~~~~v~hyri~~~~~~----~~~  149 (468)
T KOG0197|consen   74 AFIKLSDEPWFFGKISREEAERQLLAPENKEGAFLVRESESDKGDYSLSVREGDSGGLGAKVKHYRIRQLDGG----GLY  149 (468)
T ss_pred             CccccccCCchhccccHHHHHHhhcCCCCCccceeeecccCCcCCeeEEEEeccccCCccceeeeeeeEcCCC----Cee
Confidence            34678889999999999999965554 555599999999999999999999765      8999999998765    244


Q ss_pred             --eC-CceecChHhhHHhhhcccCC-Cccccccccc
Q psy10852         77 --IG-DKTFSDLPSLLAFYKVHYLD-TSPLIKPATK  108 (563)
Q Consensus        77 --~~-~~~F~sl~~Li~~y~~~~~~-~~~L~~p~~~  108 (563)
                        +. ...|.+|.+||+||+.+..+ .+.|..||..
T Consensus       150 ~~~~~~~~F~~l~~lv~~~~~~~~gl~~~l~~p~~~  185 (468)
T KOG0197|consen  150 PYIDERELFSSLQQLVNYYSKNADGLCTRLRDPCSK  185 (468)
T ss_pred             cCCCHHHhhhhHHHHHhhhhccCcchhhcccCchhc
Confidence              65 48999999999999999887 4567777764

>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.40  E-value=5e-13  Score=97.68  Aligned_cols=54  Identities=39%  Similarity=0.579  Sum_probs=47.3

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEE-EeCCCCEEEEEeCCeeeeecCCceEEc
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVT-KTNINGQWEGELNGKTGHFPFTHVEFI  537 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~-~~~~~~w~~g~~~g~~G~~P~~~v~~~  537 (563)
                      +++|+++|.  +.++++|+|++||+|.|+ .+.+++||.|+.+|+.||||++||+++
T Consensus         1 ~~~a~~d~~--~~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~~g~~G~~P~~~v~~~   55 (55)
T PF07653_consen    1 YYRAIFDYV--AEDPDELSFKKGDVIEVLGEKDDDGWWLGENNGRRGWFPSSYVEEI   55 (55)
T ss_dssp             EEEESSSBE--SSSTTB-EB-TTEEEEEEEEECSTSEEEEEETTEEEEEEGGGEEEH
T ss_pred             CEEEeEEEC--CCCCCceEEecCCEEEEEEeecCCCEEEEEECCcEEEEcHHHEEEC
Confidence            478999999  566999999999999999 778889999999999999999999875

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....

>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.37  E-value=7.7e-13  Score=96.65  Aligned_cols=54  Identities=39%  Similarity=0.832  Sum_probs=48.4

Q ss_pred             eEEEeecccCCCCCCCCCCCCCEEEEE-EecCCCcEEEEecCCcEEEEcCCCeEec
Q psy10852        387 KVIAKYDFDGNDPDDLPFKKNDILIVV-SKDEEHWWTAQNISGEVGSIPVPYVQKY  441 (563)
Q Consensus       387 ~~~a~~~y~~~~~~el~~~~g~~v~v~-~~~~~~W~~~~~~~g~~G~~P~~~v~~~  441 (563)
                      +++|+++|.+..+++|+|++||+|.|+ ++.+++||+|++ +|+.||||++||+++
T Consensus         1 ~~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~-~g~~G~~P~~~v~~~   55 (55)
T PF07653_consen    1 YYRAIFDYVAEDPDELSFKKGDVIEVLGEKDDDGWWLGEN-NGRRGWFPSSYVEEI   55 (55)
T ss_dssp             EEEESSSBESSSTTB-EB-TTEEEEEEEEECSTSEEEEEE-TTEEEEEEGGGEEEH
T ss_pred             CEEEeEEECCCCCCceEEecCCEEEEEEeecCCCEEEEEE-CCcEEEEcHHHEEEC
Confidence            489999999999999999999999999 788889999996 999999999999874

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....

>KOG3632|consensus

Probab=99.34  E-value=2.3e-12  Score=137.37  Aligned_cols=154  Identities=21%  Similarity=0.322  Sum_probs=106.2

Q ss_pred             eeeEEEeecccCCC--------CCCCCCCCCCEEEEEEecC-CCcEEEEecCCcEEEEcCCCeEeccCCccccc--cccc
Q psy10852        385 IEKVIAKYDFDGND--------PDDLPFKKNDILIVVSKDE-EHWWTAQNISGEVGSIPVPYVQKYSEGMSILS--LRNL  453 (563)
Q Consensus       385 ~~~~~a~~~y~~~~--------~~el~~~~g~~v~v~~~~~-~~W~~~~~~~g~~G~~P~~~v~~~~~~~~~~~--~~~~  453 (563)
                      ...++|||||++..        ..||.|++|++|.|+...| +|.+.|+ ++|+.|+||+|+|.++.-.....-  -+..
T Consensus      1138 arifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE-~ngr~GlIPcNmvae~~vd~eq~~~r~rqG 1216 (1335)
T KOG3632|consen 1138 ARIFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGE-LNGRRGLIPCNMVAEQPVDNEQTDRRWRQG 1216 (1335)
T ss_pred             ceeeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeecc-cccccccccccccccccCCcHHHHHHHHhc
Confidence            45689999998743        4499999999999998665 6888997 899999999999998875521000  0001


Q ss_pred             CCCCCCCCCCCCC-CCcc-cccccccccccceEEeecCCCCCCCC-----CCeeccCCCEEEEEEeCC-CCEEEEEeCCe
Q psy10852        454 HLDSSSHHVPQQQ-TTPV-RKTHLEVKLPAFARVKQVRVPNAYDK-----TALKLEIGDIIKVTKTNI-NGQWEGELNGK  525 (563)
Q Consensus       454 ~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~y~~~~~~~-----~eL~~~~gd~i~v~~~~~-~~w~~g~~~g~  525 (563)
                      .+... .+.+... +... -...+.++.+....+.+||.++..++     .+|.|..||||+|..+.+ +|+++|+++|+
T Consensus      1217 ~lPsv-~~~e~~~gs~~s~g~~k~vp~~p~~mvaa~dydpqeSSpg~dgeAelafraGdIitVfg~mdddgfyyGelngq 1295 (1335)
T KOG3632|consen 1217 LLPSV-PTEEMRKGSAFSDGQQKMVPWPPRQMVAASDYDPQESSPGLDGEAELAFRAGDIITVFGKMDDDGFYYGELNGQ 1295 (1335)
T ss_pred             cCCCC-CchhhhcccccCCCCccccCCchhhhhhhhcCCcccCCCCcccceeeccccCCeEEeeccccCCcccccccCCc
Confidence            11000 0000000 0000 00112223445677889999876554     399999999999999887 89999999999


Q ss_pred             eeeecCCceEEcCCC
Q psy10852        526 TGHFPFTHVEFIPTN  540 (563)
Q Consensus       526 ~G~~P~~~v~~~~~~  540 (563)
                      +|++|++|++.....
T Consensus      1296 kglvpsnfle~p~~e 1310 (1335)
T KOG3632|consen 1296 KGLVPSNFLEAPNAE 1310 (1335)
T ss_pred             cCccccccccCCCcc
Confidence            999999999877443

>KOG4637|consensus

Probab=99.30  E-value=2.4e-12  Score=123.76  Aligned_cols=83  Identities=27%  Similarity=0.542  Sum_probs=73.0

Q ss_pred             CCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeCC--ceecChH
Q psy10852          9 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD--KTFSDLP   86 (563)
Q Consensus         9 ~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~--~~F~sl~   86 (563)
                      ....|+.+.+.|..||.||+.. .+|+||||.|+. .|.|+|||.+++.|+|+.|.++..|     |.+..  ..+.||.
T Consensus       330 ~e~~w~~~~a~r~kAe~llrg~-~dGtFLIR~ss~-~g~yalSV~~~~~V~HClIy~tatG-----~GFa~pyn~y~tlk  402 (464)
T KOG4637|consen  330 DEKTWRVRDANRDKAEELLRGK-PDGTFLIRESSK-GGCYALSVVHDGEVKHCLIYQTATG-----FGFAEPYNLYSTLK  402 (464)
T ss_pred             hhhHhHHhhhhHHHHHHHhcCC-CCCeEEEeeccC-CCceEEEEEECCceeeeEEeecccc-----ccccchhHHHHHHH
Confidence            3357999999999999999874 459999999765 8999999999999999999999887     66654  6789999


Q ss_pred             hhHHhhhcccCC
Q psy10852         87 SLLAFYKVHYLD   98 (563)
Q Consensus        87 ~Li~~y~~~~~~   98 (563)
                      +||.||+.++|.
T Consensus       403 ~lV~hY~h~SLe  414 (464)
T KOG4637|consen  403 ELVLHYQHTSLE  414 (464)
T ss_pred             HHHHHHhhhhHH
Confidence            999999998885

>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.21  E-value=1.8e-11  Score=86.64  Aligned_cols=47  Identities=49%  Similarity=0.961  Sum_probs=43.2

Q ss_pred             EEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecC-CcEEEEcC
Q psy10852        389 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPV  435 (563)
Q Consensus       389 ~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~-g~~G~~P~  435 (563)
                      +|+|+|.++.++||+|++||+|.|+.+.+++||.+++.+ ++.||||+
T Consensus         1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~   48 (48)
T PF00018_consen    1 RALYDFDAEDPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS   48 (48)
T ss_dssp             EESSCBETSSTTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred             CCCeeeCCCCCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence            689999999999999999999999999999999998765 79999996

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....

>KOG0194|consensus

Probab=99.19  E-value=5.4e-11  Score=123.49  Aligned_cols=92  Identities=32%  Similarity=0.609  Sum_probs=76.4

Q ss_pred             CCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcc---e-EEEEEEC--CeEEEEEEEEecCCCcceEEEeCCceec
Q psy10852         10 RNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGN---Y-VLCVKEN--NKVSHYIINKITNTEQQTCYKIGDKTFS   83 (563)
Q Consensus        10 ~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~---~-~lsv~~~--~~v~h~~I~~~~~~~~~~~~~~~~~~F~   83 (563)
                      .++||||.|.|++|+.+|.+   +|+||||.|...+|.   + +|||.+.  ..++||.|.+..+.    +|......|.
T Consensus        48 ~~~~yHG~l~red~~~lL~~---~GDfLvR~s~~~~~~~~~~~vlSv~~~~~~~~~h~vi~~~~~~----~~~~~~~~F~  120 (474)
T KOG0194|consen   48 ELPYYHGLLPREDAEKLLKN---DGDFLVRASEPKEGEKREFVVLSVKWSVFKKIKHYVIKRNGNL----FFFEGLRKFP  120 (474)
T ss_pred             cCccccccccHhHHHHHhCC---CCceEEEeecccCCcceeEEEEEEEeecCCceeEEEEEEcCCe----eEEeccccCC
Confidence            36999999999999999987   799999999876553   3 8999985  88999999997653    3555669999


Q ss_pred             ChHhhHHhhhcccCC----Cccccccccc
Q psy10852         84 DLPSLLAFYKVHYLD----TSPLIKPATK  108 (563)
Q Consensus        84 sl~~Li~~y~~~~~~----~~~L~~p~~~  108 (563)
                      |+.+||+||..+...    ...|..|+.+
T Consensus       121 si~~li~~~~~~~~~~~~~~~~L~~PI~r  149 (474)
T KOG0194|consen  121 TISELVNYYKFSKLEITGKNFFLKRPIPR  149 (474)
T ss_pred             cHHHHHHHHHhcccceeccceeecccccc
Confidence            999999999998764    3347778776

>KOG2070|consensus

Probab=99.19  E-value=9.6e-12  Score=123.84  Aligned_cols=59  Identities=36%  Similarity=0.564  Sum_probs=52.3

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCCCC
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET  542 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~~~  542 (563)
                      .++|-|.|.  ..+.|||+|.+||||+|.+..++|||+|.++|++||||++||..|..+.+
T Consensus        19 vvrAkf~F~--gsNnDELsf~KgDvItVTq~eeGGWWEGTlng~TGWFPsnYV~eik~e~p   77 (661)
T KOG2070|consen   19 VVRAKFNFQ--GSNNDELSFSKGDVITVTQVEEGGWWEGTLNGRTGWFPSNYVREIKSEKP   77 (661)
T ss_pred             EEEEEeecc--cCCCceeccccCCEEEEEEeccCcceeccccCccCccchHHHHHHhhcCC
Confidence            566666665  66799999999999999999999999999999999999999999986544

>KOG1118|consensus

Probab=99.15  E-value=3e-11  Score=113.73  Aligned_cols=62  Identities=26%  Similarity=0.347  Sum_probs=55.2

Q ss_pred             cccccceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCC
Q psy10852        477 VKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       477 ~~~~~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~  540 (563)
                      .....+||++|+|.|+.  ++||.|+.||+|+|+...+.+||+|+..|..|+||.|||++|-+-
T Consensus       303 ~~~~p~cralYdFepen--EgEL~fkeGDlI~l~~QIdenWyeG~~~g~sG~FPvnYv~vlvpl  364 (366)
T KOG1118|consen  303 QMDQPCCRALYDFEPEN--EGELDFKEGDLITLTNQIDENWYEGEKHGESGMFPVNYVEVLVPL  364 (366)
T ss_pred             cccchhheeeeccCCCC--CCccCcccCceeeehhhcCcchhhheecCccCccccceeEEeccC
Confidence            33445799999999555  889999999999999999999999999999999999999998653

>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.11  E-value=1.3e-10  Score=82.31  Aligned_cols=47  Identities=49%  Similarity=0.961  Sum_probs=43.4

Q ss_pred             eecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEeeCC-CeeeEEec
Q psy10852        114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPV  160 (563)
Q Consensus       114 ~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~~~-g~~G~fP~  160 (563)
                      +|+|+|.++.+++|+|++||+|.|+++.+++||.+++.+ ++.|+||+
T Consensus         1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~   48 (48)
T PF00018_consen    1 RALYDFDAEDPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS   48 (48)
T ss_dssp             EESSCBETSSTTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred             CCCeeeCCCCCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence            589999999999999999999999999999999999875 79999995

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....

>smart00326 SH3 Src homology 3 domains

Probab=99.09  E-value=2.7e-10  Score=84.16  Aligned_cols=56  Identities=39%  Similarity=0.811  Sum_probs=51.3

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEec
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY  441 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~  441 (563)
                      ..++|+|+|.+..+++|+|++||+|.|+.+.+++||.++..+++.||||++||+.+
T Consensus         3 ~~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~~~   58 (58)
T smart00326        3 PQVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVEEI   58 (58)
T ss_pred             cEEEEeeeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEeCCCCEEEEchHHEEEC
Confidence            36899999999999999999999999999988999999866699999999999763

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.

>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies

Probab=99.08  E-value=3e-10  Score=82.61  Aligned_cols=52  Identities=44%  Similarity=0.926  Sum_probs=48.4

Q ss_pred             EEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeE
Q psy10852        388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ  439 (563)
Q Consensus       388 ~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~  439 (563)
                      ++|+|+|.+..+++|+|.+||+|.|+...+++||.+++.+++.||||++||+
T Consensus         2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~   53 (54)
T cd00174           2 VRALYDYDARDPDELSFKKGDIIEVLEKSDDGWWEGRLLGGKRGLFPSNYVE   53 (54)
T ss_pred             EEEEEeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEccccCc
Confidence            6899999999999999999999999999888999998666699999999986

>KOG3632|consensus

Probab=99.05  E-value=2.7e-10  Score=121.86  Aligned_cols=150  Identities=21%  Similarity=0.304  Sum_probs=100.1

Q ss_pred             cceeeeecccCCCCC--------CCCCcCCCCCEEEEEEecC-CCeeEEeeCCCeeeEEecCceeecccccccccccccc
Q psy10852        109 TIEKVIAKYDFDGND--------PDDLPFKKNDILIVVSKDE-EHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLH  179 (563)
Q Consensus       109 ~~~~~~a~~d~~~~~--------~~eLs~~~Gd~i~vl~~~~-~~ww~g~~~~g~~G~fP~~yv~~~~~~~~~~~~~~~~  179 (563)
                      +.++++|+|||....        ..||+|++|+||.|+...| ++.|+|. ++|+.|++|+|+|.+..-.-+....+  -
T Consensus      1137 parifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE-~ngr~GlIPcNmvae~~vd~eq~~~r--~ 1213 (1335)
T KOG3632|consen 1137 PARIFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGE-LNGRRGLIPCNMVAEQPVDNEQTDRR--W 1213 (1335)
T ss_pred             cceeeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeecc-cccccccccccccccccCCcHHHHHH--H
Confidence            356799999997743        5699999999999998655 6778886 99999999999999875432111101  0


Q ss_pred             cCCCCC---C----CCCCCCCccccccccccCccceeeeeccccC-----CCCCCceeeccCCEEEEeeecC-CCceeee
Q psy10852        180 LDSSSH---H----VPQQQTTPVRKTHLEVKLPAFARVKQVRVPN-----AYDKTALKLEIGDIIKVTKTNI-NGQWEGE  246 (563)
Q Consensus       180 ~~g~~~---~----~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-----a~~~~eLsf~~Gd~v~V~~~~~-~~W~~g~  246 (563)
                      .+|..-   +    .-.......+  .+....|-..-+.++|.+.     ...+.+|.|..||||.|+.+.| +|.++|+
T Consensus      1214 rqG~lPsv~~~e~~~gs~~s~g~~--k~vp~~p~~mvaa~dydpqeSSpg~dgeAelafraGdIitVfg~mdddgfyyGe 1291 (1335)
T KOG3632|consen 1214 RQGLLPSVPTEEMRKGSAFSDGQQ--KMVPWPPRQMVAASDYDPQESSPGLDGEAELAFRAGDIITVFGKMDDDGFYYGE 1291 (1335)
T ss_pred             HhccCCCCCchhhhcccccCCCCc--cccCCchhhhhhhhcCCcccCCCCcccceeeccccCCeEEeeccccCCcccccc
Confidence            011000   0    0000000000  1111122234455666663     3345689999999999999876 5788999


Q ss_pred             eCCceeeccccceeecC
Q psy10852        247 LNGKTGHFPFTHVEFIP  263 (563)
Q Consensus       247 ~~g~~G~~P~~~ve~~~  263 (563)
                      ++|+.|.+|++|++...
T Consensus      1292 lngqkglvpsnfle~p~ 1308 (1335)
T KOG3632|consen 1292 LNGQKGLVPSNFLEAPN 1308 (1335)
T ss_pred             cCCccCccccccccCCC
Confidence            99999999999998774

>KOG2199|consensus

Probab=99.03  E-value=6.1e-11  Score=115.57  Aligned_cols=58  Identities=29%  Similarity=0.669  Sum_probs=53.2

Q ss_pred             cceeeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEeeCCCeeeEEecCceeecc
Q psy10852        109 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS  167 (563)
Q Consensus       109 ~~~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~~~g~~G~fP~~yv~~~~  167 (563)
                      ..++++|+|||++.+++||+|++||||.|++..+.+||.|. .++..|+||+|||...-
T Consensus       214 ~~rkVRALYDFeAaE~nELsFkaGdIItVLd~s~~~WWKG~-~~~~~GlFPsnfVT~~l  271 (462)
T KOG2199|consen  214 VVRKVRALYDFEAAEDNELSFKAGDIITVLDDSDPNWWKGE-NHRGIGLFPSNFVTADL  271 (462)
T ss_pred             cchhhhhhhcccccCCCccceecCcEEEEcccCCcchhccc-cCCcccccchhhhhhhh
Confidence            35679999999999999999999999999999999999997 77889999999998653

>KOG1930|consensus

Probab=99.02  E-value=2.6e-10  Score=111.85  Aligned_cols=92  Identities=29%  Similarity=0.518  Sum_probs=75.6

Q ss_pred             CCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEE---------------CCeEEEEEEEEecCCCcce
Q psy10852          9 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKE---------------NNKVSHYIINKITNTEQQT   73 (563)
Q Consensus         9 ~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~---------------~~~v~h~~I~~~~~~~~~~   73 (563)
                      -+.-||..+|+|++|-+||+++.. |+||||+|.+..|.|-|.++.               +.-|+||.|+....|    
T Consensus       210 TSKyWYKP~isREQAIalLrdkeP-GtFvvRDS~SfrGayGLAlKVstPPPs~~~~~g~~~neLVRHFLIE~spkG----  284 (483)
T KOG1930|consen  210 TSKYWYKPNISREQAIALLRDKEP-GTFVVRDSHSFRGAYGLALKVSTPPPSVQPGDGSDSNELVRHFLIEPSPKG----  284 (483)
T ss_pred             ccccccCCCCCHHHHHHHhhcCCC-CeEEEecCCcCCCccceEEEeccCCCcccCCCCCchhhhhhhheeccCCCc----
Confidence            356799999999999999998655 999999999999999999974               135999999988766    


Q ss_pred             EEEeC----CceecChHhhHHhhhcccCC-Cccccccc
Q psy10852         74 CYKIG----DKTFSDLPSLLAFYKVHYLD-TSPLIKPA  106 (563)
Q Consensus        74 ~~~~~----~~~F~sl~~Li~~y~~~~~~-~~~L~~p~  106 (563)
                       ..|-    +..|.||..||-.|+-.+|. .|.|..|-
T Consensus       285 -VkLKGC~nEP~FGSLSALV~QHSIt~LALPckL~iP~  321 (483)
T KOG1930|consen  285 -VKLKGCDNEPVFGSLSALVYQHSITALALPCKLVIPD  321 (483)
T ss_pred             -eeccCCCCCCccchhHHHHhhccchhhhcceeEeccC
Confidence             7773    47999999999988877664 45555443

>KOG2070|consensus

Probab=99.02  E-value=9.8e-11  Score=116.75  Aligned_cols=57  Identities=33%  Similarity=0.746  Sum_probs=53.7

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccC
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  443 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~  443 (563)
                      -.++|.|.|.+.+.+||+|.+||+|+|....+.|||.|+ .+|+.||||++||..+..
T Consensus        18 LvvrAkf~F~gsNnDELsf~KgDvItVTq~eeGGWWEGT-lng~TGWFPsnYV~eik~   74 (661)
T KOG2070|consen   18 LVVRAKFNFQGSNNDELSFSKGDVITVTQVEEGGWWEGT-LNGRTGWFPSNYVREIKS   74 (661)
T ss_pred             eEEEEEeecccCCCceeccccCCEEEEEEeccCcceecc-ccCccCccchHHHHHHhh
Confidence            368999999999999999999999999999999999997 899999999999998874

>smart00326 SH3 Src homology 3 domains

Probab=99.00  E-value=8.4e-10  Score=81.44  Aligned_cols=54  Identities=37%  Similarity=0.532  Sum_probs=48.9

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeC-CeeeeecCCceEEc
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELN-GKTGHFPFTHVEFI  537 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~-g~~G~~P~~~v~~~  537 (563)
                      .++|+++|.+  ..+++|+|++||+|.|+...++|||.++.. |+.||||.+||+.+
T Consensus         4 ~~~a~~~~~~--~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~~~   58 (58)
T smart00326        4 QVRALYDYTA--QDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVEEI   58 (58)
T ss_pred             EEEEeeeeCC--CCCCCCCCCCCCEEEEEEcCCCCeEEEEeCCCCEEEEchHHEEEC
Confidence            6789999995  558899999999999999888999999988 99999999999864

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.

>KOG2199|consensus

Probab=99.00  E-value=8.7e-11  Score=114.52  Aligned_cols=57  Identities=30%  Similarity=0.680  Sum_probs=53.0

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEecc
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS  442 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~  442 (563)
                      ..+++|||||.+..++||+|++||+|+|++..+..||+|. ..+..|+||.|||...-
T Consensus       215 ~rkVRALYDFeAaE~nELsFkaGdIItVLd~s~~~WWKG~-~~~~~GlFPsnfVT~~l  271 (462)
T KOG2199|consen  215 VRKVRALYDFEAAEDNELSFKAGDIITVLDDSDPNWWKGE-NHRGIGLFPSNFVTADL  271 (462)
T ss_pred             chhhhhhhcccccCCCccceecCcEEEEcccCCcchhccc-cCCcccccchhhhhhhh
Confidence            4589999999999999999999999999999999999998 68889999999998655

>KOG0162|consensus

Probab=98.98  E-value=6.6e-10  Score=115.65  Aligned_cols=60  Identities=28%  Similarity=0.399  Sum_probs=53.1

Q ss_pred             ccccccceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEc
Q psy10852        476 EVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI  537 (563)
Q Consensus       476 ~~~~~~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~  537 (563)
                      .......|.|+|+|.  +++.+||+|++||+|.|+.+..+|||.|+++|++||||.+||+.+
T Consensus      1047 ~~~k~p~~~A~Y~y~--gq~~dEls~~~~diIei~~edpSGWw~gk~~~keG~~P~~Yv~~~ 1106 (1106)
T KOG0162|consen 1047 KPPKNPVCEALYDYP--GQDVDELSFKKGDIIEIMREDPSGWWLGKLNGKEGLFPGNYVTEY 1106 (1106)
T ss_pred             CCCCCcceeeeccCC--CCCcccccccCCCEEEEeccCCCcchhhccCCccccccccccccC
Confidence            334446799999999  557999999999999999999999999999999999999999753

>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies

Probab=98.95  E-value=1.7e-09  Score=78.56  Aligned_cols=51  Identities=39%  Similarity=0.574  Sum_probs=46.0

Q ss_pred             eEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCC-eeeeecCCceE
Q psy10852        483 ARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNG-KTGHFPFTHVE  535 (563)
Q Consensus       483 ~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g-~~G~~P~~~v~  535 (563)
                      ++++++|.++  .+++|+|.+||+|.|++..++|||.++..+ +.||||.+||+
T Consensus         2 ~~a~~~~~~~--~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~   53 (54)
T cd00174           2 VRALYDYDAR--DPDELSFKKGDIIEVLEKSDDGWWEGRLLGGKRGLFPSNYVE   53 (54)
T ss_pred             EEEEEeeCCC--CCCCCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEccccCc
Confidence            6789999954  488999999999999998889999999876 99999999986

>KOG1118|consensus

Probab=98.88  E-value=7.3e-10  Score=104.57  Aligned_cols=58  Identities=29%  Similarity=0.602  Sum_probs=54.0

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  443 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~  443 (563)
                      ...|+|+|+|++++++||.|++||+|.|+...|++||.|. ..|..|+||.|||+++.+
T Consensus       306 ~p~cralYdFepenEgEL~fkeGDlI~l~~QIdenWyeG~-~~g~sG~FPvnYv~vlvp  363 (366)
T KOG1118|consen  306 QPCCRALYDFEPENEGELDFKEGDLITLTNQIDENWYEGE-KHGESGMFPVNYVEVLVP  363 (366)
T ss_pred             chhheeeeccCCCCCCccCcccCceeeehhhcCcchhhhe-ecCccCccccceeEEecc
Confidence            3469999999999999999999999999999999999998 789999999999998754

>KOG0162|consensus

Probab=98.71  E-value=8.2e-09  Score=107.70  Aligned_cols=55  Identities=38%  Similarity=0.808  Sum_probs=52.0

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEec
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY  441 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~  441 (563)
                      ..|.|+|+|.++..+||+|++||+|.++.++..|||.|+ .+|+.||||.+||.++
T Consensus      1052 p~~~A~Y~y~gq~~dEls~~~~diIei~~edpSGWw~gk-~~~keG~~P~~Yv~~~ 1106 (1106)
T KOG0162|consen 1052 PVCEALYDYPGQDVDELSFKKGDIIEIMREDPSGWWLGK-LNGKEGLFPGNYVTEY 1106 (1106)
T ss_pred             cceeeeccCCCCCcccccccCCCEEEEeccCCCcchhhc-cCCccccccccccccC
Confidence            579999999999999999999999999999999999998 8999999999999753

>KOG2856|consensus

Probab=98.69  E-value=3.6e-09  Score=102.08  Aligned_cols=56  Identities=34%  Similarity=0.604  Sum_probs=50.7

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEecC-CCcEEEEecCCcEEEEcCCCeEec
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE-EHWWTAQNISGEVGSIPVPYVQKY  441 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~-~~W~~~~~~~g~~G~~P~~~v~~~  441 (563)
                      .+++|||||.++..+||+|++||.|.+++..| .||+.|+...|+.|++|+|||+.+
T Consensus       415 v~vraLYDY~gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~~G~vGLyPAnYVe~~  471 (472)
T KOG2856|consen  415 VRVRALYDYAGQEGDELSFKAGDELEKLEEEDEQGWCKGRLDSGRVGLYPANYVECI  471 (472)
T ss_pred             eeEEeeeccCcccccchhhccccHhhhcCCccccccccccccCCcccccchhhhhcc
Confidence            57999999999999999999999999998776 499999855699999999999865

>KOG2546|consensus

Probab=98.67  E-value=5e-09  Score=103.28  Aligned_cols=56  Identities=29%  Similarity=0.321  Sum_probs=50.8

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCC
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT  539 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~  539 (563)
                      .+.++|+|+...  .+||+|.+|-+|.|++++|+|||+|.++|-.|+||.|||+.+..
T Consensus       425 kVv~iydy~~~K--ddeLsf~E~ailyv~kknddgw~EgV~~~VTglFpgnyve~~~~  480 (483)
T KOG2546|consen  425 KVVAIYDYTADK--DDELSFAEGAILYVLKKNDDGWYEGVQDGVTGLFPGNYVEPLKA  480 (483)
T ss_pred             HHHhhccccccc--ccccccccccEEEEEEecCCcchhheecCcceeccCcccccccc
Confidence            567899999544  88999999999999999999999999999999999999998753

>PF14633 SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_A

Probab=98.54  E-value=3.5e-06  Score=78.98  Aligned_cols=81  Identities=16%  Similarity=0.228  Sum_probs=61.5

Q ss_pred             CccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEE-CCeEEEEEEEEecCCC----cceEEEeCCceecChH
Q psy10852         12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKE-NNKVSHYIINKITNTE----QQTCYKIGDKTFSDLP   86 (563)
Q Consensus        12 ~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~-~~~v~h~~I~~~~~~~----~~~~~~~~~~~F~sl~   86 (563)
                      |-|+ +++-.+|+++|..... |+++||.|+......+|+++. ++-..|+.|...+...    |. .+.+++..|.+|+
T Consensus        39 P~F~-n~~~~qAe~~L~~~~~-Ge~iIRPSSkG~dhL~vTwKv~d~vyqHidV~E~~K~n~~slG~-~L~i~~~~yeDLD  115 (220)
T PF14633_consen   39 PLFK-NFNYKQAEEYLADQDV-GEVIIRPSSKGPDHLTVTWKVADGVYQHIDVKEEDKENEFSLGK-TLKIGGEEYEDLD  115 (220)
T ss_dssp             TTEE-SS-HHHHHHHHCCS-T-T-EEEEE-TTTTTEEEEEEEEETTEEEEEEEEEECSSSTTS-SS-EEEETTEEESSHH
T ss_pred             CCcc-CCCHHHHHHHHhcCCC-CCEEEeeCCCCCCeEEEEEEEcCCcEEEEEEEECCCcCccccCc-EEEECCeEECCHH
Confidence            5566 8999999999988654 999999999866668888875 6778899999765321    23 3778889999999


Q ss_pred             hhHHhhhcc
Q psy10852         87 SLLAFYKVH   95 (563)
Q Consensus        87 ~Li~~y~~~   95 (563)
                      |||.-|...
T Consensus       116 Eii~r~V~p  124 (220)
T PF14633_consen  116 EIIARHVEP  124 (220)
T ss_dssp             HHHHHCHHH
T ss_pred             HHHHHHHHH
Confidence            999998764

>KOG2546|consensus

Probab=98.47  E-value=6.1e-08  Score=95.75  Aligned_cols=57  Identities=33%  Similarity=0.702  Sum_probs=53.3

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEecc
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS  442 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~  442 (563)
                      .+.++++|||.+..++||+|.+|-+|.|+.+.|+|||+|. .+|..|+||.|||+++.
T Consensus       423 LEkVv~iydy~~~KddeLsf~E~ailyv~kknddgw~EgV-~~~VTglFpgnyve~~~  479 (483)
T KOG2546|consen  423 LEKVVAIYDYTADKDDELSFAEGAILYVLKKNDDGWYEGV-QDGVTGLFPGNYVEPLK  479 (483)
T ss_pred             HHHHHhhcccccccccccccccccEEEEEEecCCcchhhe-ecCcceeccCccccccc
Confidence            4568999999999999999999999999999999999996 89999999999998774

>KOG2856|consensus

Probab=98.45  E-value=3.5e-08  Score=95.44  Aligned_cols=55  Identities=24%  Similarity=0.344  Sum_probs=49.4

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCC-CCEEEEEeC-CeeeeecCCceEEc
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI-NGQWEGELN-GKTGHFPFTHVEFI  537 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~-~~w~~g~~~-g~~G~~P~~~v~~~  537 (563)
                      ..++|||||.++.  .+||+|++||.+..++..| -||..|+++ |+.|++|+|||+-+
T Consensus       415 v~vraLYDY~gqE--~DElsfkaGd~l~kl~eeDeqGWC~Grl~~G~vGLyPAnYVe~~  471 (472)
T KOG2856|consen  415 VRVRALYDYAGQE--GDELSFKAGDELEKLEEEDEQGWCKGRLDSGRVGLYPANYVECI  471 (472)
T ss_pred             eeEEeeeccCccc--ccchhhccccHhhhcCCccccccccccccCCcccccchhhhhcc
Confidence            4689999999655  8899999999999999776 799999998 99999999999854

>KOG3751|consensus

Probab=98.35  E-value=2.5e-07  Score=93.77  Aligned_cols=91  Identities=30%  Similarity=0.543  Sum_probs=78.4

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeC--Cce
Q psy10852          5 FDPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG--DKT   81 (563)
Q Consensus         5 ~~~~~~~~w~~g~i~r~~ae~~L~~-~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~--~~~   81 (563)
                      +..|-++.||||.|+|+++..++++ +-.+|-||+|+|.+++-.|++++.+..+|+||+|...+. +|..+|.+.  ...
T Consensus       513 ~~~h~sq~~~~~kis~~es~~~ikq~glv~~~~l~r~sqsnP~~~~~~~~~~~~v~~~~~~P~~~-~~~~~~t~~~g~t~  591 (622)
T KOG3751|consen  513 QAIHRSQTWFHGKISRDESQRLIKQQGLVDGLFLVRDSQSNPKIFVLSLCHPQKVKHFQILPVED-DGCTFFTLDDGPTK  591 (622)
T ss_pred             hhhcccccCcccccCchhhhhHHHhcccceeeeeecccccCcchhhhhccCCccccceEEecCCC-CCceeeccCCCCcc
Confidence            5567889999999999999999988 467899999999999999999999999999999999665 455445553  389


Q ss_pred             ecChHhhHHhhhccc
Q psy10852         82 FSDLPSLLAFYKVHY   96 (563)
Q Consensus        82 F~sl~~Li~~y~~~~   96 (563)
                      |.++..|+++|.-++
T Consensus       592 ~sd~~ql~~~~ql~k  606 (622)
T KOG3751|consen  592 FSDLIQLVEFYQLNK  606 (622)
T ss_pred             ccccccccchhhcCC
Confidence            999999999998773

>KOG3655|consensus

Probab=98.29  E-value=2.1e-07  Score=93.74  Aligned_cols=57  Identities=32%  Similarity=0.674  Sum_probs=53.1

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEec
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY  441 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~  441 (563)
                      .-.++|+|+|+|.++.||+|..+|+|.+|...++|||.|...+|..|+||+|||+.+
T Consensus       427 ~q~A~A~~dyqAAddtEisf~p~d~it~Id~vdegww~g~~pdG~~glfPaNyV~li  483 (484)
T KOG3655|consen  427 PQTARALYDYQAADDTEISFDPPDAITLIDQVDEGWWTGQGPDGEVGLFPANYVELI  483 (484)
T ss_pred             CCCccccccccccCCcccccCCccccccccccCCccccccCCCCCcCcccccccccC
Confidence            347899999999999999999999999999999999999877999999999999865

>KOG3875|consensus

Probab=98.29  E-value=1.8e-07  Score=88.76  Aligned_cols=59  Identities=34%  Similarity=0.563  Sum_probs=52.5

Q ss_pred             ceeeeecccCCCCCCCCCcCCCCCEEEEEEecC-----CCeeEEeeC-CCeeeEEecCceeeccc
Q psy10852        110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE-----EHWWTAQNI-SGEVGSIPVPYVQKYSE  168 (563)
Q Consensus       110 ~~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~-----~~ww~g~~~-~g~~G~fP~~yv~~~~~  168 (563)
                      .+.++|+|||.++++.||+|++||++.|+.|.+     .+||..+.. ++.+||||.|||+.+..
T Consensus       268 ~~~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~r  332 (362)
T KOG3875|consen  268 HEFARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIGR  332 (362)
T ss_pred             HHHHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhhc
Confidence            477999999999999999999999999988765     469999887 77899999999998864

>KOG3655|consensus

Probab=98.20  E-value=8.1e-07  Score=89.60  Aligned_cols=58  Identities=31%  Similarity=0.433  Sum_probs=52.5

Q ss_pred             cccceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEe-CCeeeeecCCceEEcC
Q psy10852        479 LPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL-NGKTGHFPFTHVEFIP  538 (563)
Q Consensus       479 ~~~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~-~g~~G~~P~~~v~~~~  538 (563)
                      .+..++|+++|.  |-+..||+|.++|+|++|...+.|||.|.. +|..|+||+|||++|.
T Consensus       426 ~~q~A~A~~dyq--AAddtEisf~p~d~it~Id~vdegww~g~~pdG~~glfPaNyV~li~  484 (484)
T KOG3655|consen  426 EPQTARALYDYQ--AADDTEISFDPPDAITLIDQVDEGWWTGQGPDGEVGLFPANYVELIE  484 (484)
T ss_pred             cCCCcccccccc--ccCCcccccCCccccccccccCCccccccCCCCCcCcccccccccCC
Confidence            567889999998  777899999999999999999999999987 5999999999998873

>KOG3875|consensus

Probab=98.20  E-value=2.5e-07  Score=87.86  Aligned_cols=58  Identities=34%  Similarity=0.586  Sum_probs=51.8

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEecC-----CCcEEEEec-CCcEEEEcCCCeEeccC
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE-----EHWWTAQNI-SGEVGSIPVPYVQKYSE  443 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~-----~~W~~~~~~-~g~~G~~P~~~v~~~~~  443 (563)
                      ..|+|+|||.+.++.||+|++||++.|..|.+     ..||..... ++..||||.|||+.+..
T Consensus       269 ~~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~r  332 (362)
T KOG3875|consen  269 EFARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIGR  332 (362)
T ss_pred             HHHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhhc
Confidence            57899999999999999999999999999875     358888766 78999999999998876

>KOG0515|consensus

Probab=98.20  E-value=6.1e-07  Score=91.02  Aligned_cols=57  Identities=35%  Similarity=0.751  Sum_probs=50.6

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEecCC---CcEEEEecCCcEEEEcCCCeEeccC
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEE---HWWTAQNISGEVGSIPVPYVQKYSE  443 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~---~W~~~~~~~g~~G~~P~~~v~~~~~  443 (563)
                      ..+-|+|||.++..+||+|.+||.++|+.++|+   +||.++ .+|+.|+||.+|+-.+..
T Consensus       684 G~vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~-lng~eGyVPRnylgLyPr  743 (752)
T KOG0515|consen  684 GVVYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWAR-LNGEEGYVPRNYLGLYPR  743 (752)
T ss_pred             ceeEEeecccccccccccccCCceeEEEecCCcchhhhhhHh-hcCcccccchhhhhcCcc
Confidence            357899999999999999999999999999753   799998 899999999999976543

>KOG0515|consensus

Probab=98.19  E-value=5.6e-07  Score=91.28  Aligned_cols=57  Identities=21%  Similarity=0.254  Sum_probs=49.8

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEeCC---CCEEEEEeCCeeeeecCCceEEcCCC
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI---NGQWEGELNGKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~---~~w~~g~~~g~~G~~P~~~v~~~~~~  540 (563)
                      .+.+++||.  ++..|||+|++||.++|+++.+   ..||.++++|++|+||.+|+-+...-
T Consensus       685 ~vYAlwdYe--aqf~DELsf~eGd~lTvirr~d~~eteWWwa~lng~eGyVPRnylgLyPri  744 (752)
T KOG0515|consen  685 VVYALWDYE--AQFEDELSFDEGDELTVIRRDDEVETEWWWARLNGEEGYVPRNYLGLYPRI  744 (752)
T ss_pred             eeEEeeccc--ccccccccccCCceeEEEecCCcchhhhhhHhhcCcccccchhhhhcCccc
Confidence            477899998  6679999999999999999865   68999999999999999999876543

>KOG1930|consensus

Probab=98.17  E-value=2.3e-06  Score=84.56  Aligned_cols=84  Identities=29%  Similarity=0.508  Sum_probs=68.6

Q ss_pred             CCCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeC---------------CeeEEEEEeeecCCCcce
Q psy10852        284 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKEN---------------NKVSHYIINKITNTEQQT  348 (563)
Q Consensus       284 ~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~---------------~~v~h~~I~~~~~~~~~~  348 (563)
                      .++-||..+|+|++|.++|..+. .|+|+||+|.+-.|.|-|.++..               .-|+||+|+....+    
T Consensus       210 TSKyWYKP~isREQAIalLrdke-PGtFvvRDS~SfrGayGLAlKVstPPPs~~~~~g~~~neLVRHFLIE~spkG----  284 (483)
T KOG1930|consen  210 TSKYWYKPNISREQAIALLRDKE-PGTFVVRDSHSFRGAYGLALKVSTPPPSVQPGDGSDSNELVRHFLIEPSPKG----  284 (483)
T ss_pred             ccccccCCCCCHHHHHHHhhcCC-CCeEEEecCCcCCCccceEEEeccCCCcccCCCCCchhhhhhhheeccCCCc----
Confidence            35689999999999999998854 49999999999999999988851               23889999988776    


Q ss_pred             eEEeC----CcccCChhhHHhhhhcccCC
Q psy10852        349 CYKIG----DKTFSDLPSLLAFYKVHYLD  373 (563)
Q Consensus       349 ~~~i~----~~~f~sl~~lv~~y~~~~~~  373 (563)
                       .++.    ++.|.||..||-.+.-..|.
T Consensus       285 -VkLKGC~nEP~FGSLSALV~QHSIt~LA  312 (483)
T KOG1930|consen  285 -VKLKGCDNEPVFGSLSALVYQHSITALA  312 (483)
T ss_pred             -eeccCCCCCCccchhHHHHhhccchhhh
Confidence             7774    48999999999765443333

>KOG1702|consensus

Probab=98.08  E-value=3.5e-06  Score=75.19  Aligned_cols=56  Identities=25%  Similarity=0.264  Sum_probs=50.3

Q ss_pred             ccceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEe--CCeeeeecCCceEEc
Q psy10852        480 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFI  537 (563)
Q Consensus       480 ~~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~--~g~~G~~P~~~v~~~  537 (563)
                      ...+++.+||.  |++++|++|.-||-|.-....++||.+|.+  +|..|.+|+|||+.+
T Consensus       207 gktyra~ydys--aqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie~v  264 (264)
T KOG1702|consen  207 GKTYRAFYDYS--AQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIEFV  264 (264)
T ss_pred             CccchhhccCc--ccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhheeeC
Confidence            35789999999  778999999999999999999999999976  599999999999864

>KOG1843|consensus

Probab=98.04  E-value=2e-06  Score=84.88  Aligned_cols=55  Identities=36%  Similarity=0.758  Sum_probs=50.6

Q ss_pred             ceeeeecccCCCCCCCCCcCCCCCEEEEEEecC--CCeeEEeeCCCeeeEEecCceee
Q psy10852        110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE--EHWWTAQNISGEVGSIPVPYVQK  165 (563)
Q Consensus       110 ~~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~--~~ww~g~~~~g~~G~fP~~yv~~  165 (563)
                      ...++++|+|..+.+.+|+|++||||.++++.+  ..||.++ .++++|+||+|||+.
T Consensus       416 ~n~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr-~~~~egifPanyv~~  472 (473)
T KOG1843|consen  416 PNIATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGR-GNGYEGIFPANYVSL  472 (473)
T ss_pred             cceeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhh-ccccccccccceecc
Confidence            346899999999999999999999999999876  6899998 999999999999964

>KOG2222|consensus

Probab=98.03  E-value=6.7e-07  Score=89.50  Aligned_cols=60  Identities=28%  Similarity=0.407  Sum_probs=54.0

Q ss_pred             ccceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCCC
Q psy10852        480 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNE  541 (563)
Q Consensus       480 ~~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~~  541 (563)
                      ..+++++.||.  ..+.+||.|+++|+|+|++.-+...|.|+++|-+||||+-||+++++..
T Consensus       548 ~krakal~df~--r~dddelgfrkndiitiisekdehcwvgelnglrgwfpakfvellder~  607 (848)
T KOG2222|consen  548 AKRAKALHDFA--REDDDELGFRKNDIITIISEKDEHCWVGELNGLRGWFPAKFVELLDERG  607 (848)
T ss_pred             hHHHHHHhhhh--hccccccccccccEEEEeecCCcceeeeccccccccchHHHHHHHHhcc
Confidence            34688899987  6678899999999999999999999999999999999999999997653

>KOG1702|consensus

Probab=98.02  E-value=3.3e-06  Score=75.41  Aligned_cols=57  Identities=23%  Similarity=0.453  Sum_probs=51.1

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEe-cCCcEEEEcCCCeEec
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKY  441 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~-~~g~~G~~P~~~v~~~  441 (563)
                      ...++|+|||.|+..+|++|.-||.|..+...++||-+|+. .+|..|..|+||++.+
T Consensus       207 gktyra~ydysaqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie~v  264 (264)
T KOG1702|consen  207 GKTYRAFYDYSAQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIEFV  264 (264)
T ss_pred             CccchhhccCcccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhheeeC
Confidence            45799999999999999999999999999999999988863 3899999999999853

>KOG3697|consensus

Probab=98.00  E-value=6.3e-06  Score=77.58  Aligned_cols=91  Identities=18%  Similarity=0.229  Sum_probs=71.9

Q ss_pred             CCCccccCCCHHHHHHHHcCCCCCCeEEEEecC-----------------------------------------------
Q psy10852         10 RNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSN-----------------------------------------------   42 (563)
Q Consensus        10 ~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~-----------------------------------------------   42 (563)
                      ..+||||.++++.+++.|..   +|.|++|.+.                                               
T Consensus       200 k~pp~~g~l~~~~~q~~l~~---~a~~~a~~~~~~p~~~~ls~l~~~n~ppp~~p~~kl~~~~~~~n~~~~~~rd~~~~~  276 (345)
T KOG3697|consen  200 KMPPPGGFLDTRLKQRPLAP---DAAQFAGKEQTYPQGRHLSDLRQGNSPPPSTPEGKLHVAPTYVNTQQIPRRDLFDET  276 (345)
T ss_pred             cCCCCCCccchhhhhccCCc---ccchhhhhccCCcccccccchhhcCCCCCCCCCccCCCCcccccccccchhhhcccc
Confidence            46999999999999999975   6899988643                                               


Q ss_pred             CCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeCCceecChHhhHHhhhcccCC------Cccccccccc
Q psy10852         43 TILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLD------TSPLIKPATK  108 (563)
Q Consensus        43 ~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~sl~~Li~~y~~~~~~------~~~L~~p~~~  108 (563)
                      +.+|.|+|+=..+++.+|..+.--+ |  .  .+..++.|+|+..||+|+..+.|.      .-+|+.|+.+
T Consensus       277 ~~~gqyvltgl~~~~~khlllvdpe-g--v--vrtkd~~fdsishli~yh~~~~lpiis~~sel~l~~pv~r  343 (345)
T KOG3697|consen  277 TTPGQYVLTGLQSGQPKHLLLVDPE-G--V--VRTKDRRFDSISHLINYHMDNHLPIISAGSELCLQQPVER  343 (345)
T ss_pred             CCCccEEEecccCCCcceEEEECCc-c--c--eecccchhhHHHHHHHHhhhccCceecCcchhhhhCcccc
Confidence            4578899998899999999876432 2  2  566679999999999999998763      2356667654

>KOG1843|consensus

Probab=98.00  E-value=3e-06  Score=83.57  Aligned_cols=56  Identities=36%  Similarity=0.744  Sum_probs=51.1

Q ss_pred             ceeeEEEeecccCCCCCCCCCCCCCEEEEEEecC--CCcEEEEecCCcEEEEcCCCeEe
Q psy10852        384 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE--EHWWTAQNISGEVGSIPVPYVQK  440 (563)
Q Consensus       384 ~~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~--~~W~~~~~~~g~~G~~P~~~v~~  440 (563)
                      ....+.|+|+|.++.+++|+|++||+|.++.+.+  +.||.++ .++++|+||+|||++
T Consensus       415 ~~n~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr-~~~~egifPanyv~~  472 (473)
T KOG1843|consen  415 EPNIATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGR-GNGYEGIFPANYVSL  472 (473)
T ss_pred             CcceeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhh-ccccccccccceecc
Confidence            4558999999999999999999999999999886  4799997 899999999999964

>KOG3523|consensus

Probab=97.85  E-value=2e-06  Score=88.98  Aligned_cols=62  Identities=29%  Similarity=0.375  Sum_probs=53.6

Q ss_pred             cccceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEe--CCeeeeecCCceEEcCCCCC
Q psy10852        479 LPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIPTNET  542 (563)
Q Consensus       479 ~~~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~--~g~~G~~P~~~v~~~~~~~~  542 (563)
                      ....+.++..|.  +..++||++..+|++.|+.+.++||++|+.  +|.+||||.+||+.|.+..+
T Consensus       607 dcpQv~~~~sy~--a~q~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~veeI~~~~~  670 (695)
T KOG3523|consen  607 DCPQVQCVHSYK--AKQPDELTLELADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEEITNPHT  670 (695)
T ss_pred             CCChhheeeccc--cCCCceeeeehhhhhhhhhcCCCccccccccccCccCcchHHHHHHhcCHHH
Confidence            344577888888  556999999999999999999999999976  59999999999999977554

>KOG0194|consensus

Probab=97.84  E-value=6.5e-05  Score=78.65  Aligned_cols=91  Identities=32%  Similarity=0.611  Sum_probs=73.0

Q ss_pred             CCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcc---e-EEEEEeC--CeeEEEEEeeecCCCcceeEEeCCcccCC
Q psy10852        286 NSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGN---Y-VLCVKEN--NKVSHYIINKITNTEQQTCYKIGDKTFSD  359 (563)
Q Consensus       286 ~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~---~-~ls~~~~--~~v~h~~I~~~~~~~~~~~~~i~~~~f~s  359 (563)
                      .+||||-+.|++++.+|..   +|.||||.|...++.   + .||+...  .+++|+.|...++.    .|......|++
T Consensus        49 ~~~yHG~l~red~~~lL~~---~GDfLvR~s~~~~~~~~~~~vlSv~~~~~~~~~h~vi~~~~~~----~~~~~~~~F~s  121 (474)
T KOG0194|consen   49 LPYYHGLLPREDAEKLLKN---DGDFLVRASEPKEGEKREFVVLSVKWSVFKKIKHYVIKRNGNL----FFFEGLRKFPT  121 (474)
T ss_pred             CccccccccHhHHHHHhCC---CCceEEEeecccCCcceeEEEEEEEeecCCceeEEEEEEcCCe----eEEeccccCCc
Confidence            5999999999999999987   699999999987663   3 7888874  78899999987652    24555699999


Q ss_pred             hhhHHhhhhcccCCC----Ccccccccc
Q psy10852        360 LPSLLAFYKVHYLDT----SPLIKPATK  383 (563)
Q Consensus       360 l~~lv~~y~~~~~~~----~~l~~P~~~  383 (563)
                      +.+||.||..+...-    ..|..|+++
T Consensus       122 i~~li~~~~~~~~~~~~~~~~L~~PI~r  149 (474)
T KOG0194|consen  122 ISELVNYYKFSKLEITGKNFFLKRPIPR  149 (474)
T ss_pred             HHHHHHHHHhcccceeccceeecccccc
Confidence            999999999876543    236677765

>KOG4773|consensus

Probab=97.79  E-value=4e-06  Score=81.22  Aligned_cols=151  Identities=17%  Similarity=0.137  Sum_probs=94.8

Q ss_pred             eEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEe--cCCcEEEEcCCCeEeccCCcccccccccCCCCCCCCCCC
Q psy10852        387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN--ISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQ  464 (563)
Q Consensus       387 ~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~--~~g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (563)
                      .+++.|||.++..+++.-.....        ..|+....  .-|..|++|-.||.+......+...... .+..-.-++.
T Consensus        91 pA~v~fdfkqe~Ae~r~~~ln~y--------~e~LlslPi~~l~~p~l~~fffvsp~D~~dVpeai~r~-~Prt~~~ks~  161 (386)
T KOG4773|consen   91 PAIVYFDFKQEIAEERIPALNAY--------CEWLLSLPIGRLGGPGLRPFFFVSPYDSEDVPEAIRRL-RPRTRKWKSD  161 (386)
T ss_pred             cceeEechhhhhhhhhhHHHHHH--------HHHHHhcchhhcCCCCceeeeeeccchHhhhhHHHHhc-Cchhhhcccc
Confidence            57888888888777654332110        34655432  1356789999999887733112111100 0000000000


Q ss_pred             CCCCcccccc-cccccccceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCCCCC
Q psy10852        465 QQTTPVRKTH-LEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS  543 (563)
Q Consensus       465 ~~~~~~~~~~-~~~~~~~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~~~~  543 (563)
                      . .+  ..+. ........++++++|..+.  ..||.|.+||++.++.+.+.+||.|...|.+||+|.+|++.++.....
T Consensus       162 ~-~s--kasni~~~~~~q~~~a~~df~gns--~~EL~l~agdV~~~~~r~ek~W~~gk~R~~~g~yp~sF~~~ld~fpee  236 (386)
T KOG4773|consen  162 G-VS--KASNIVLGMAAQRAEASFDFPGNS--KLELNLVAGDVEFLLSRDEKYWLLGKVRGLTGYYPDSFVKQLDDFPEE  236 (386)
T ss_pred             c-cC--ccccccchhhhHHHHhhccCCCCc--cceeeeehhhHHHHHhhcccceeeeeeccccccccHHhhhhhccCccc
Confidence            0 00  0000 0111224678899998665  779999999999999999999999999999999999999999877665


Q ss_pred             CCCCCCCc
Q psy10852        544 VETNGNGD  551 (563)
Q Consensus       544 ~~~~~~~~  551 (563)
                      ...+++..
T Consensus       237 D~~~nw~r  244 (386)
T KOG4773|consen  237 DAGTNWLR  244 (386)
T ss_pred             cCCCCccc
Confidence            66666654

>KOG2528|consensus

Probab=97.73  E-value=1.9e-05  Score=79.09  Aligned_cols=58  Identities=31%  Similarity=0.532  Sum_probs=53.1

Q ss_pred             eEEEeecccCCCCCCCCCCCCCEEEEEEec-CCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKD-EEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       387 ~~~a~~~y~~~~~~el~~~~g~~v~v~~~~-~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      +++|+|+|.++...||++..||++.+.... .+|||.|.+..|..|+||++||+.+...
T Consensus         4 k~RamyDf~~E~~sElsi~~~evl~i~~e~~~~GwLeg~Nsrge~GlfPa~yVeV~~~a   62 (490)
T KOG2528|consen    4 KARAMYDFQSEGHSELSIWEGEVLSITSEDVIEGWLEGSNSRGERGLFPASYVEVTRLA   62 (490)
T ss_pred             chhhhcchhhcccccccccccceeeecCcccccccccCCCccCccCCCcccceeeeccc
Confidence            678999999999999999999999998866 4799999999999999999999988744

>KOG3725|consensus

Probab=97.66  E-value=9.2e-06  Score=75.16  Aligned_cols=56  Identities=29%  Similarity=0.208  Sum_probs=50.4

Q ss_pred             ccceEEeecCCCCCCCCCCeeccCCCEEEEEEeC--CCCEEEEEeCCeeeeecCCceEEc
Q psy10852        480 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTN--INGQWEGELNGKTGHFPFTHVEFI  537 (563)
Q Consensus       480 ~~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~--~~~w~~g~~~g~~G~~P~~~v~~~  537 (563)
                      ...++|++||.  +....||++-..|+|+|.+..  |.+|..|+.++++|-+|..|++.+
T Consensus       317 trkArVlyDYd--Aa~s~ElslladeiitVyslpGMD~dwlmgErGnkkGKvPvtYlELL  374 (375)
T KOG3725|consen  317 TRKARVLYDYD--AALSQELSLLADEIITVYSLPGMDADWLMGERGNKKGKVPVTYLELL  374 (375)
T ss_pred             ccceeeeeccc--ccchhhhhhhhcceEEEEecCCCChHHhhhhhcCCCCCcchhHHHhc
Confidence            45799999999  667889999999999998865  589999999999999999999876

>KOG3523|consensus

Probab=97.58  E-value=7.6e-06  Score=84.78  Aligned_cols=58  Identities=24%  Similarity=0.558  Sum_probs=52.7

Q ss_pred             eEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEec-CCcEEEEcCCCeEeccCC
Q psy10852        387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       387 ~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~-~g~~G~~P~~~v~~~~~~  444 (563)
                      .+.++..|.+..++||+++.+|+|.|+.+..+||++|... +|..||||.+||+.+...
T Consensus       610 Qv~~~~sy~a~q~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~veeI~~~  668 (695)
T KOG3523|consen  610 QVQCVHSYKAKQPDELTLELADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEEITNP  668 (695)
T ss_pred             hhheeeccccCCCceeeeehhhhhhhhhcCCCccccccccccCccCcchHHHHHHhcCH
Confidence            4678899999999999999999999999999999999644 899999999999988654

>KOG2222|consensus

Probab=97.43  E-value=1.9e-05  Score=79.41  Aligned_cols=59  Identities=34%  Similarity=0.665  Sum_probs=54.2

Q ss_pred             ceeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccC
Q psy10852        384 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  443 (563)
Q Consensus       384 ~~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~  443 (563)
                      ...+++|+.||.-..++||.|++.|+|++++..|+..|.|+ .+|-+||||+-||+.+..
T Consensus       547 ~~krakal~df~r~dddelgfrkndiitiisekdehcwvge-lnglrgwfpakfvellde  605 (848)
T KOG2222|consen  547 GAKRAKALHDFAREDDDELGFRKNDIITIISEKDEHCWVGE-LNGLRGWFPAKFVELLDE  605 (848)
T ss_pred             hhHHHHHHhhhhhccccccccccccEEEEeecCCcceeeec-cccccccchHHHHHHHHh
Confidence            35578999999999999999999999999999999999997 899999999999987654

>KOG1856|consensus

Probab=97.37  E-value=0.0011  Score=73.92  Aligned_cols=82  Identities=20%  Similarity=0.302  Sum_probs=61.8

Q ss_pred             CCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEE-CCeEEEEEEEEecCCC----cceEEEeCCceecCh
Q psy10852         11 NSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKE-NNKVSHYIINKITNTE----QQTCYKIGDKTFSDL   85 (563)
Q Consensus        11 ~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~-~~~v~h~~I~~~~~~~----~~~~~~~~~~~F~sl   85 (563)
                      .|.|| +++-++|+.+|.... .|.++||.|+......+++.+. ++-..|+.|+......    |. .+.+++..|..|
T Consensus      1108 HP~F~-n~n~eQAe~yL~~~d-~ge~iiRpSSrgddhLvvtwKVsD~iYqhidV~E~eKEn~fslg~-~l~i~~e~feDL 1184 (1299)
T KOG1856|consen 1108 HPLFK-NLNAEQAEAYLSDMD-QGELIIRPSSRGDDHLVVTWKVSDGIYQHIDVQELEKENYFSLGK-TLWIGGEEFEDL 1184 (1299)
T ss_pred             Ccccc-CCCHHHHHHHHHhcc-cccEEeccccCCCCceEEEEEecCchhhhhhhhhhhccccccccc-eEEECCcccccH
Confidence            37777 799999999998854 5999999998866667777665 5667788887643211    11 244567899999


Q ss_pred             HhhHHhhhcc
Q psy10852         86 PSLLAFYKVH   95 (563)
Q Consensus        86 ~~Li~~y~~~   95 (563)
                      .|+|.-|...
T Consensus      1185 DEiI~r~vqp 1194 (1299)
T KOG1856|consen 1185 DEIIARYVQP 1194 (1299)
T ss_pred             HHHHHHHHHH
Confidence            9999999765

>KOG4566|consensus

Probab=97.14  E-value=0.00073  Score=64.71  Aligned_cols=89  Identities=25%  Similarity=0.393  Sum_probs=71.8

Q ss_pred             CCCCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeC---
Q psy10852          2 TGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG---   78 (563)
Q Consensus         2 ~~~~~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~---   78 (563)
                      +.++.-++...||+|.+++++|+..|..++. |.||||+|+..+-.+.|++.....-+..+|.....     .|..+   
T Consensus        43 a~s~~~~~~~g~~w~~~~~~~~~~~l~~~p~-~~~l~Rdss~~~~~~~I~vk~~~g~~~~r~~~~~~-----sfr~ds~~  116 (258)
T KOG4566|consen   43 AKSLSLLDSSGHYWGLETANEAELCLGQEPR-GTFLVRDSSHRPYLFTISVKTHSGPKNLRIQYQDS-----SFRLDSSH  116 (258)
T ss_pred             hheeeccccCCcccccccchhHHHhhcCCCc-cceeeecCcCccccceeEeeeccCCCCcccccccc-----ceeccccc
Confidence            4567778888999999999999999988765 99999999987777999999877777777776542     25552   


Q ss_pred             ---C--ceecChHhhHHhhhccc
Q psy10852         79 ---D--KTFSDLPSLLAFYKVHY   96 (563)
Q Consensus        79 ---~--~~F~sl~~Li~~y~~~~   96 (563)
                         .  ..|+.+..+|+||+...
T Consensus       117 ~~~~pl~~~e~~~~~~~~y~~~~  139 (258)
T KOG4566|consen  117 RHTPPLISFEDVEVLIHHYRQSR  139 (258)
T ss_pred             ccCCCcccChhHHHHHHhhhhhh
Confidence               1  48999999999996553

>KOG4773|consensus

Probab=97.12  E-value=4.3e-05  Score=74.21  Aligned_cols=56  Identities=27%  Similarity=0.582  Sum_probs=52.3

Q ss_pred             eEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccC
Q psy10852        387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  443 (563)
Q Consensus       387 ~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~  443 (563)
                      .+.|+++|.+....||.|.+||++.++.+++.+||.|+ ..|..||+|.+|++++..
T Consensus       177 ~~~a~~df~gns~~EL~l~agdV~~~~~r~ek~W~~gk-~R~~~g~yp~sF~~~ld~  232 (386)
T KOG4773|consen  177 RAEASFDFPGNSKLELNLVAGDVEFLLSRDEKYWLLGK-VRGLTGYYPDSFVKQLDD  232 (386)
T ss_pred             HHHhhccCCCCccceeeeehhhHHHHHhhcccceeeee-eccccccccHHhhhhhcc
Confidence            57889999999999999999999999999999999998 789999999999998854

>KOG3557|consensus

Probab=96.83  E-value=0.00055  Score=71.88  Aligned_cols=59  Identities=25%  Similarity=0.569  Sum_probs=53.1

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ..++.++|||.+.+..||++.+||++.|+.. ..+||.+++..|+.|++|.|.+.++...
T Consensus       500 ~k~~~~~Ydf~arNs~ELsV~k~E~LEvl~d-~R~WW~~kn~~G~~GyvP~nIL~~~~~~  558 (721)
T KOG3557|consen  500 KKWVLVLYDFQARNSSELSVKKGEVLEVLDD-GRKWWKVKNGHGRAGYVPSNILAPLQPE  558 (721)
T ss_pred             ceeeeeehhhhcccchhhhhhhhhhhhhhhc-cccceeccCccCCCCCcchhhhccCCCc
Confidence            4588999999999999999999999999954 4689999999999999999999888765

>KOG1451|consensus

Probab=96.79  E-value=0.001  Score=69.07  Aligned_cols=55  Identities=29%  Similarity=0.321  Sum_probs=45.0

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeC-CCCEEEEEeCCeeeeecCCceEEc
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTN-INGQWEGELNGKTGHFPFTHVEFI  537 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~-~~~w~~g~~~g~~G~~P~~~v~~~  537 (563)
                      ..+++++.-+  +....+|+|.+|.+++-.... .+||..|+++|++|++|.|||+.+
T Consensus       757 rk~k~lyAc~--a~h~selsf~~gt~f~nv~~S~e~Gwl~GtLnGktglip~nyve~l  812 (812)
T KOG1451|consen  757 RRVKTLYACT--ADHHSELSFEPGTIFTNVYESNEDGWLVGTLNGKTGLIPSNYVEPL  812 (812)
T ss_pred             ccccceeccC--CCCcccccccCcceeeeecccCCCCceeeecCCCcccCcccccCcC
Confidence            3455666655  555779999999999887744 499999999999999999999864

>KOG3775|consensus

Probab=96.79  E-value=0.00058  Score=66.97  Aligned_cols=57  Identities=25%  Similarity=0.530  Sum_probs=51.6

Q ss_pred             EEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEec-CCcEEEEcCCCeEeccCC
Q psy10852        388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       388 ~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~-~g~~G~~P~~~v~~~~~~  444 (563)
                      -+|++.|.+..++||.++.||-|.|-...++-|++|.|. +|++|+||+.|+-.+...
T Consensus       265 HR~~~rFvPRHpDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~evd~~  322 (482)
T KOG3775|consen  265 HRAVFRFVPRHPDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEVDGP  322 (482)
T ss_pred             hhhhhhccCCCcceeeeecCCeeEeeecccchhhccccccccccccccceeEEecCCc
Confidence            478899999999999999999999999989999999875 799999999999877654

>KOG0609|consensus

Probab=96.71  E-value=0.00054  Score=70.96  Aligned_cols=58  Identities=38%  Similarity=0.762  Sum_probs=48.8

Q ss_pred             eeeEEEeecccCCCCC-------CCCCCCCCEEEEEEecCCCcEEEEec----CCcEEEEcCCCeEecc
Q psy10852        385 IEKVIAKYDFDGNDPD-------DLPFKKNDILIVVSKDEEHWWTAQNI----SGEVGSIPVPYVQKYS  442 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~-------el~~~~g~~v~v~~~~~~~W~~~~~~----~g~~G~~P~~~v~~~~  442 (563)
                      ...++|+|||++..++       -|+|++||++.|++++|..||+++..    ++..|++|+..++.-.
T Consensus       214 ~~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qerr  282 (542)
T KOG0609|consen  214 VVFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQERR  282 (542)
T ss_pred             eeeehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHHHHH
Confidence            3678999999998766       68999999999999999999999744    3789999998776443

>KOG2528|consensus

Probab=96.71  E-value=0.00067  Score=68.27  Aligned_cols=56  Identities=32%  Similarity=0.565  Sum_probs=51.6

Q ss_pred             eeeecccCCCCCCCCCcCCCCCEEEEEEec-CCCeeEEeeCCCeeeEEecCceeecc
Q psy10852        112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKD-EEHWWTAQNISGEVGSIPVPYVQKYS  167 (563)
Q Consensus       112 ~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~-~~~ww~g~~~~g~~G~fP~~yv~~~~  167 (563)
                      ..+++|||...+..+|+...|+++.+.... .++||.|.|.+|.+|+||+.||+...
T Consensus         4 k~RamyDf~~E~~sElsi~~~evl~i~~e~~~~GwLeg~Nsrge~GlfPa~yVeV~~   60 (490)
T KOG2528|consen    4 KARAMYDFQSEGHSELSIWEGEVLSITSEDVIEGWLEGSNSRGERGLFPASYVEVTR   60 (490)
T ss_pred             chhhhcchhhcccccccccccceeeecCcccccccccCCCccCccCCCcccceeeec
Confidence            468999999999999999999999998765 58999999999999999999999876

>KOG3775|consensus

Probab=96.61  E-value=0.0011  Score=65.10  Aligned_cols=59  Identities=24%  Similarity=0.493  Sum_probs=53.2

Q ss_pred             eeeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEee-CCCeeeEEecCceeecccc
Q psy10852        111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKYSEG  169 (563)
Q Consensus       111 ~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~-~~g~~G~fP~~yv~~~~~~  169 (563)
                      ..-++++.|.++.++||-+..||-|.|-...++.|..|.| .+|++|+||+.|+.+++..
T Consensus       263 ~THR~~~rFvPRHpDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~evd~~  322 (482)
T KOG3775|consen  263 QTHRAVFRFVPRHPDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEVDGP  322 (482)
T ss_pred             hhhhhhhhccCCCcceeeeecCCeeEeeecccchhhccccccccccccccceeEEecCCc
Confidence            3357889999999999999999999999999999999999 5899999999999988753

>KOG4429|consensus

Probab=96.60  E-value=0.00066  Score=64.31  Aligned_cols=54  Identities=24%  Similarity=0.174  Sum_probs=48.4

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEc
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI  537 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~  537 (563)
                      .|.+.|.|.  +...+||....||++.+.++...|||.|++.|..|-||+.||+..
T Consensus       365 lcdafYSfq--arqddel~~e~gditif~Ekkeeg~~f~rl~gd~~hf~Aa~iEea  418 (421)
T KOG4429|consen  365 LCDAFYSFQ--ARQDDELGGEIGDITIFDEKKEEGPTFCRLLGDFEHFHAAEIEEA  418 (421)
T ss_pred             Hhhhhhccc--cccccccCCcccceeeecCcccCCCceeeeccccCCCcHHHHHHh
Confidence            467777766  777999999999999999999999999999999999999999764

>KOG3771|consensus

Probab=96.59  E-value=0.0017  Score=66.31  Aligned_cols=52  Identities=25%  Similarity=0.138  Sum_probs=42.2

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEeCC-CCEEEEEeCCeeeeecCCceE
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI-NGQWEGELNGKTGHFPFTHVE  535 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~-~~w~~g~~~g~~G~~P~~~v~  535 (563)
                      .++++++|.  +.+.++|+|+.||+|.|+...+ +.||.|++.|..+-+|..|+.
T Consensus       402 ~v~a~~dy~--a~~~deLsf~~gd~i~vi~s~~~~e~~eg~~mg~ke~~~~~~~~  454 (460)
T KOG3771|consen  402 KVKALHDYA--AQDTDELSFEAGDVILVIPSDNPEEQDEGWLMGVKESDWNGLFP  454 (460)
T ss_pred             ceecccccc--ccccccccccCCCEEEEecCCCccchhhHHHhhhccccccccee
Confidence            455666666  8789999999999999999655 899999999877777766664

>KOG3725|consensus

Probab=96.55  E-value=0.00054  Score=63.70  Aligned_cols=56  Identities=23%  Similarity=0.501  Sum_probs=50.0

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEec--CCCcEEEEecCCcEEEEcCCCeEec
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVPYVQKY  441 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~--~~~W~~~~~~~g~~G~~P~~~v~~~  441 (563)
                      ...++++|||++..+.||++-+.++|+|.+-.  |.+|..|+ .+++.|-+|.+|++.+
T Consensus       317 trkArVlyDYdAa~s~ElslladeiitVyslpGMD~dwlmgE-rGnkkGKvPvtYlELL  374 (375)
T KOG3725|consen  317 TRKARVLYDYDAALSQELSLLADEIITVYSLPGMDADWLMGE-RGNKKGKVPVTYLELL  374 (375)
T ss_pred             ccceeeeecccccchhhhhhhhcceEEEEecCCCChHHhhhh-hcCCCCCcchhHHHhc
Confidence            45799999999999999999999999998764  67899997 7999999999998754

>KOG1451|consensus

Probab=96.55  E-value=0.0024  Score=66.34  Aligned_cols=59  Identities=24%  Similarity=0.487  Sum_probs=51.1

Q ss_pred             ccceeeEEEeecccCCCCCCCCCCCCCEEEEEE-ecCCCcEEEEecCCcEEEEcCCCeEec
Q psy10852        382 TKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVS-KDEEHWWTAQNISGEVGSIPVPYVQKY  441 (563)
Q Consensus       382 ~~~~~~~~a~~~y~~~~~~el~~~~g~~v~v~~-~~~~~W~~~~~~~g~~G~~P~~~v~~~  441 (563)
                      +....++.++|.-.+....+++|..|.++.-+. ...+||..|+ ++|+.|++|.|||+++
T Consensus       753 ~~~~rk~k~lyAc~a~h~selsf~~gt~f~nv~~S~e~Gwl~Gt-LnGktglip~nyve~l  812 (812)
T KOG1451|consen  753 KYLSRRVKTLYACTADHHSELSFEPGTIFTNVYESNEDGWLVGT-LNGKTGLIPSNYVEPL  812 (812)
T ss_pred             ccccccccceeccCCCCcccccccCcceeeeecccCCCCceeee-cCCCcccCcccccCcC
Confidence            334567899999999999999999999998776 4567999998 8999999999999863

>KOG4575|consensus

Probab=96.54  E-value=0.0035  Score=65.61  Aligned_cols=61  Identities=23%  Similarity=0.325  Sum_probs=46.5

Q ss_pred             ccccceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeC--CeeeeecCCceEEcCCC
Q psy10852        478 KLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELN--GKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       478 ~~~~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~--g~~G~~P~~~v~~~~~~  540 (563)
                      +.++.++|++...  .+.+++|.|-+||+|.++.-.++.||-+.+.  ...|+||+|||..++.-
T Consensus         6 q~p~~vrA~y~w~--ge~eGdl~f~egDlie~trI~dgkwwi~lhrNk~~~g~fpsNFvhcLd~r   68 (874)
T KOG4575|consen    6 QLPCMVRALYAWP--GEREGDLKFTEGDLIEQTRIEDGKWWILLHRNKDEDGLFPSNFVHCLDKR   68 (874)
T ss_pred             CCCceEEeeccCC--CCcccccceecccceeEEeeccceeeeeeeecccccccCcccceeecccc
Confidence            4466778888777  5558899999999999999666555555544  46799999999777543

>KOG3751|consensus

Probab=96.52  E-value=0.0021  Score=66.10  Aligned_cols=89  Identities=30%  Similarity=0.556  Sum_probs=72.7

Q ss_pred             CCCCCCccccccCHHHHHHHHhc-CCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeC--CcccC
Q psy10852        282 PHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG--DKTFS  358 (563)
Q Consensus       282 ~~~~~~w~~g~~sr~~A~~~l~~-~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~--~~~f~  358 (563)
                      .|....|+|+.++|.++..++.+ +-.+|.|++|+|.+.|..|++++...++++|+.|.-+... +..-+...  ...|.
T Consensus       515 ~h~sq~~~~~kis~~es~~~ikq~glv~~~~l~r~sqsnP~~~~~~~~~~~~v~~~~~~P~~~~-~~~~~t~~~g~t~~s  593 (622)
T KOG3751|consen  515 IHRSQTWFHGKISRDESQRLIKQQGLVDGLFLVRDSQSNPKIFVLSLCHPQKVKHFQILPVEDD-GCTFFTLDDGPTKFS  593 (622)
T ss_pred             hcccccCcccccCchhhhhHHHhcccceeeeeecccccCcchhhhhccCCccccceEEecCCCC-CceeeccCCCCcccc
Confidence            34567999999999999998877 4678999999999999999999999999999999986543 32213333  37899


Q ss_pred             ChhhHHhhhhccc
Q psy10852        359 DLPSLLAFYKVHY  371 (563)
Q Consensus       359 sl~~lv~~y~~~~  371 (563)
                      ++-.|+++|+.+.
T Consensus       594 d~~ql~~~~ql~k  606 (622)
T KOG3751|consen  594 DLIQLVEFYQLNK  606 (622)
T ss_pred             ccccccchhhcCC
Confidence            9999999998663

>KOG4575|consensus

Probab=96.47  E-value=0.0033  Score=65.79  Aligned_cols=58  Identities=24%  Similarity=0.464  Sum_probs=47.5

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEec-CCcEEEEcCCCeEecc
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYS  442 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~-~g~~G~~P~~~v~~~~  442 (563)
                      .+.++|+|.+.++.+++|.|-+||+|.++...+.-||-+.+. ....|+||.|||..+.
T Consensus         8 p~~vrA~y~w~ge~eGdl~f~egDlie~trI~dgkwwi~lhrNk~~~g~fpsNFvhcLd   66 (874)
T KOG4575|consen    8 PCMVRALYAWPGEREGDLKFTEGDLIEQTRIEDGKWWILLHRNKDEDGLFPSNFVHCLD   66 (874)
T ss_pred             CceEEeeccCCCCcccccceecccceeEEeeccceeeeeeeecccccccCcccceeecc
Confidence            357899999999999999999999999998766555555544 4678999999996544

>KOG4429|consensus

Probab=96.32  E-value=0.0011  Score=62.91  Aligned_cols=55  Identities=22%  Similarity=0.195  Sum_probs=50.7

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEec
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY  441 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~  441 (563)
                      ..|.++|.|.+..++||....||++.+-++..+|||.|+ ..|..|-||+.||+..
T Consensus       364 ~lcdafYSfqarqddel~~e~gditif~Ekkeeg~~f~r-l~gd~~hf~Aa~iEea  418 (421)
T KOG4429|consen  364 ILCDAFYSFQARQDDELGGEIGDITIFDEKKEEGPTFCR-LLGDFEHFHAAEIEEA  418 (421)
T ss_pred             HHhhhhhccccccccccCCcccceeeecCcccCCCceee-eccccCCCcHHHHHHh
Confidence            468899999999999999999999999999999999998 7999999999998754

>KOG0609|consensus

Probab=96.29  E-value=0.0015  Score=67.68  Aligned_cols=57  Identities=39%  Similarity=0.777  Sum_probs=47.4

Q ss_pred             ceeeeecccCCCCCCC-------CCcCCCCCEEEEEEecCCCeeEEeeCC----CeeeEEecCceeec
Q psy10852        110 IEKVIAKYDFDGNDPD-------DLPFKKNDILIVVSKDEEHWWTAQNIS----GEVGSIPVPYVQKY  166 (563)
Q Consensus       110 ~~~~~a~~d~~~~~~~-------eLs~~~Gd~i~vl~~~~~~ww~g~~~~----g~~G~fP~~yv~~~  166 (563)
                      ...++|+|||++..++       -|+|++|||+.|+.++|.+||.++...    +..|++|+..+++-
T Consensus       214 ~~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qer  281 (542)
T KOG0609|consen  214 VVFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQER  281 (542)
T ss_pred             eeeehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHHHH
Confidence            4678999999987754       678999999999999999999998643    45799999877653

>KOG3557|consensus

Probab=96.05  E-value=0.0026  Score=66.95  Aligned_cols=60  Identities=17%  Similarity=0.264  Sum_probs=50.1

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeC-CeeeeecCCceEEcCCCCCCC
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELN-GKTGHFPFTHVEFIPTNETSV  544 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~-g~~G~~P~~~v~~~~~~~~~~  544 (563)
                      +++++|||.  +++..||++.+||++.|+. ..-+||+++.. |+.|++|.+.|..+.+.....
T Consensus       502 ~~~~~Ydf~--arNs~ELsV~k~E~LEvl~-d~R~WW~~kn~~G~~GyvP~nIL~~~~~~~~~~  562 (721)
T KOG3557|consen  502 WVLVLYDFQ--ARNSSELSVKKGEVLEVLD-DGRKWWKVKNGHGRAGYVPSNILAPLQPEHTGE  562 (721)
T ss_pred             eeeeehhhh--cccchhhhhhhhhhhhhhh-ccccceeccCccCCCCCcchhhhccCCCccccc
Confidence            566666666  8889999999999999988 45689998875 999999999999998776544

>PF14633 SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_A

Probab=95.89  E-value=0.014  Score=54.90  Aligned_cols=73  Identities=21%  Similarity=0.351  Sum_probs=53.9

Q ss_pred             CCHHHHHHHHcCC----CCCCeEEEEecCCCCcceEEEEEECCeEEEEE--EEEecCCCcceEEEeCCceecChHhhHHh
Q psy10852         18 MTRQEAQAILLSE----KDNGAFLVRDSNTILGNYVLCVKENNKVSHYI--INKITNTEQQTCYKIGDKTFSDLPSLLAF   91 (563)
Q Consensus        18 i~r~~ae~~L~~~----~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~--I~~~~~~~~~~~~~~~~~~F~sl~~Li~~   91 (563)
                      =+++++|++|...    +.--.|.+-.+...||.|.|++..+...+|.-  |.-.+.|     |.+.+..|++|.+|+++
T Consensus       141 g~~~e~e~~L~~~k~~nP~~i~Y~f~~~~~~PG~F~L~y~~~~~~~~~~~~v~V~p~G-----f~~r~~~f~~~~~L~~~  215 (220)
T PF14633_consen  141 GTKEEVEEWLKEEKKANPKRIPYAFCISKEHPGYFILSYKPNKNPRHEYWPVKVTPDG-----FRFRKQVFPSLDRLINW  215 (220)
T ss_dssp             S-CCCCHHHHHCHHHHSTTS-EEEEEE-TTSTTEEEEEEESSTTS-EEEEEEEE-SSS-----EEETTEEESSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCceEEEEECCCCCCEEEEEEEcCCCCceEEeeEEEecCc-----EEEecccCCCHHHHHHH
Confidence            4577788888772    33346777778788999999998765544444  7777777     99999999999999999


Q ss_pred             hhcc
Q psy10852         92 YKVH   95 (563)
Q Consensus        92 y~~~   95 (563)
                      |+.+
T Consensus       216 FK~~  219 (220)
T PF14633_consen  216 FKKH  219 (220)
T ss_dssp             HHHH
T ss_pred             Hhhc
Confidence            9865

>KOG3771|consensus

Probab=95.77  E-value=0.005  Score=62.99  Aligned_cols=55  Identities=25%  Similarity=0.298  Sum_probs=43.5

Q ss_pred             ceeeEEEeecccCCCCCCCCCCCCCEEEEEEecC-CCcEEEEecCCcEEEEcCCCeE
Q psy10852        384 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE-EHWWTAQNISGEVGSIPVPYVQ  439 (563)
Q Consensus       384 ~~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~-~~W~~~~~~~g~~G~~P~~~v~  439 (563)
                      ....+.++|+|.++..++|+|+.||+|.|+..++ +.||.|. ..|..+-+|.+||.
T Consensus       399 ~~~~v~a~~dy~a~~~deLsf~~gd~i~vi~s~~~~e~~eg~-~mg~ke~~~~~~~~  454 (460)
T KOG3771|consen  399 FLYKVKALHDYAAQDTDELSFEAGDVILVIPSDNPEEQDEGW-LMGVKESDWNGLFP  454 (460)
T ss_pred             CccceeccccccccccccccccCCCEEEEecCCCccchhhHH-Hhhhccccccccee
Confidence            3557899999999999999999999999999654 4788886 55666666655553

>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A

Probab=95.28  E-value=0.024  Score=44.12  Aligned_cols=45  Identities=22%  Similarity=0.317  Sum_probs=32.5

Q ss_pred             CCCCCcCCCCCEEEEEEecCCCeeEEeeCCCeeeEEecCceeecc
Q psy10852        123 DPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS  167 (563)
Q Consensus       123 ~~~eLs~~~Gd~i~vl~~~~~~ww~g~~~~g~~G~fP~~yv~~~~  167 (563)
                      ..-+|.+++|+++.|++..+.+-|.+||..|+-|++|.+++-..+
T Consensus        29 G~kDLpi~~GE~LeVI~~t~~~kvlCRN~~GKYGYV~~~~L~~~d   73 (89)
T PF14603_consen   29 GGKDLPIKPGEILEVIQFTDDNKVLCRNSEGKYGYVLRSHLLPLD   73 (89)
T ss_dssp             -TTB----TT-B-EEEEESSSSEEEEEETTTEEEEEEGGGS----
T ss_pred             CcccCCcCCCCEEEEEEeCCCCeEEEeCCCCceeEEEHHHccCCC
Confidence            457999999999999999999999999999999999999986554

>KOG0199|consensus

Probab=94.96  E-value=0.02  Score=61.64  Aligned_cols=52  Identities=27%  Similarity=0.488  Sum_probs=42.6

Q ss_pred             EEEeecccCCCCCCCCCCCCCEEEEEEecCC-CcEEEEe-cCCcEEEEcCCCeE
Q psy10852        388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEE-HWWTAQN-ISGEVGSIPVPYVQ  439 (563)
Q Consensus       388 ~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~-~W~~~~~-~~g~~G~~P~~~v~  439 (563)
                      ++|...|++..++.|-|++||.|+|++.... -||+|.+ .+++.|.||.+-|-
T Consensus       377 ~~a~~~~d~~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt  430 (1039)
T KOG0199|consen  377 AVARETYDSIEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVT  430 (1039)
T ss_pred             ceeeeeccccCCCceeeccCCeEEEEecCCccceeeccccccceecccCcceee
Confidence            3445556677889999999999999998865 5999965 48899999999876

>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=94.95  E-value=0.054  Score=39.00  Aligned_cols=37  Identities=22%  Similarity=0.303  Sum_probs=30.9

Q ss_pred             eeccCCCEEEEEEeCCCC-EEEE-EeCCeeeeecCCceE
Q psy10852        499 LKLEIGDIIKVTKTNING-QWEG-ELNGKTGHFPFTHVE  535 (563)
Q Consensus       499 L~~~~gd~i~v~~~~~~~-w~~g-~~~g~~G~~P~~~v~  535 (563)
                      -.+..|+.|.|+....++ |++. ..+|.+||+++.||+
T Consensus        17 ~~l~~g~~v~v~~~~~~~~W~~V~~~~g~~GwV~~~~l~   55 (55)
T PF08239_consen   17 GQLPKGEKVTVLGESGDGNWYKVRTYDGKTGWVSSSYLS   55 (55)
T ss_dssp             EEEETTSEEEEEEEETT--EEEEEEETTEEEEEEGGCEE
T ss_pred             EEEeCCCEEEEEEEcCCcEEEEEECcCCcEEEEEccccC
Confidence            356889999999977755 9999 678999999999985

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.

>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=94.92  E-value=0.041  Score=39.66  Aligned_cols=36  Identities=17%  Similarity=0.544  Sum_probs=30.5

Q ss_pred             CCCCCEEEEEEecCCC-cEEEEecCCcEEEEcCCCeE
Q psy10852        404 FKKNDILIVVSKDEEH-WWTAQNISGEVGSIPVPYVQ  439 (563)
Q Consensus       404 ~~~g~~v~v~~~~~~~-W~~~~~~~g~~G~~P~~~v~  439 (563)
                      +..|+.|.|+....++ |++.+..+|..||+++.||+
T Consensus        19 l~~g~~v~v~~~~~~~~W~~V~~~~g~~GwV~~~~l~   55 (55)
T PF08239_consen   19 LPKGEKVTVLGESGDGNWYKVRTYDGKTGWVSSSYLS   55 (55)
T ss_dssp             EETTSEEEEEEEETT--EEEEEEETTEEEEEEGGCEE
T ss_pred             EeCCCEEEEEEEcCCcEEEEEECcCCcEEEEEccccC
Confidence            5779999999988765 99996679999999999984

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.

>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A

Probab=94.56  E-value=0.043  Score=42.77  Aligned_cols=45  Identities=22%  Similarity=0.310  Sum_probs=32.0

Q ss_pred             CCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccC
Q psy10852        399 PDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  443 (563)
Q Consensus       399 ~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~  443 (563)
                      ..+|.+++|+++.|+...+++=|.|++..|+-|+||.+++-+...
T Consensus        30 ~kDLpi~~GE~LeVI~~t~~~kvlCRN~~GKYGYV~~~~L~~~d~   74 (89)
T PF14603_consen   30 GKDLPIKPGEILEVIQFTDDNKVLCRNSEGKYGYVLRSHLLPLDG   74 (89)
T ss_dssp             TTB----TT-B-EEEEESSSSEEEEEETTTEEEEEEGGGS-----
T ss_pred             cccCCcCCCCEEEEEEeCCCCeEEEeCCCCceeEEEHHHccCCCC
Confidence            468999999999999999999999999999999999999865543

>KOG3565|consensus

Probab=94.46  E-value=0.022  Score=62.32  Aligned_cols=56  Identities=18%  Similarity=0.328  Sum_probs=47.3

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEeCC-CCEEEEE--eCCeeeeecCCceEEcCC
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI-NGQWEGE--LNGKTGHFPFTHVEFIPT  539 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~-~~w~~g~--~~g~~G~~P~~~v~~~~~  539 (563)
                      .+.+++.|.  +.+++++++.+|+++.+++... +||-+++  .+|..|.||.+||+.+..
T Consensus       580 ~~~a~~~~~--~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~~~~  638 (640)
T KOG3565|consen  580 TSKALYAFE--GQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDVTET  638 (640)
T ss_pred             ceecccCcC--CCCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCccccccccc
Confidence            455566666  6669999999999999999775 8999999  789999999999987754

>KOG1856|consensus

Probab=94.44  E-value=0.027  Score=63.38  Aligned_cols=83  Identities=24%  Similarity=0.429  Sum_probs=67.9

Q ss_pred             CccccCCCHHHHHHHHcC-CCCCCeEEEE---ecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeCCceecChHh
Q psy10852         12 SWYFGMMTRQEAQAILLS-EKDNGAFLVR---DSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPS   87 (563)
Q Consensus        12 ~w~~g~i~r~~ae~~L~~-~~~~G~FLvR---~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~sl~~   87 (563)
                      .+|. .=++.+.|++|.. .+.++.+.+-   .|...||.|+|+++.+.+++|--|.-.+.|     |++.+..|.||.+
T Consensus      1206 kyf~-~Gt~~~~ek~L~~~k~~np~~~~Y~F~~s~~~PG~F~L~y~~~~k~~heyv~v~p~g-----~~~rg~~f~tld~ 1279 (1299)
T KOG1856|consen 1206 KYFF-TGTKKEVEKLLRDYKKVNPKKSVYFFCASHEHPGKFCLSYKPSSKPRHEYVKVVPEG-----FRFRGQNFGTLDE 1279 (1299)
T ss_pred             hHhh-cCCHHHHHHHHHHHhccCCCeeeEEEEecccCCceEEEEeccCCCccceeEEEcccc-----eEEecccchhHHH
Confidence            4554 2349999999986 4555777665   577789999999999999999999988887     9999999999999


Q ss_pred             hHHhhhcccCCCc
Q psy10852         88 LLAFYKVHYLDTS  100 (563)
Q Consensus        88 Li~~y~~~~~~~~  100 (563)
                      |..+|+++-...+
T Consensus      1280 L~~~FK~h~~~~~ 1292 (1299)
T KOG1856|consen 1280 LCRWFKRHYKDPT 1292 (1299)
T ss_pred             HHHHHHHHhcCCC
Confidence            9999998855433

>KOG0199|consensus

Probab=94.43  E-value=0.11  Score=56.35  Aligned_cols=56  Identities=34%  Similarity=0.414  Sum_probs=44.9

Q ss_pred             cccceEEeecCCCCCCCCCCeeccCCCEEEEEEeCC-CCEEEEE--eCCeeeeecCCceEEcC
Q psy10852        479 LPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI-NGQWEGE--LNGKTGHFPFTHVEFIP  538 (563)
Q Consensus       479 ~~~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~-~~w~~g~--~~g~~G~~P~~~v~~~~  538 (563)
                      .+..+++++++.    .++.|.|++||.|+|++... +-||.|.  .+++.|.||.+-|..-.
T Consensus       375 qp~~a~~~~d~~----ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt~a~  433 (1039)
T KOG0199|consen  375 QPAVARETYDSI----EPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVTAAT  433 (1039)
T ss_pred             CCceeeeecccc----CCCceeeccCCeEEEEecCCccceeeccccccceecccCcceeeecc
Confidence            455677777754    49999999999999999765 6789984  46899999999998443

>KOG3697|consensus

Probab=94.11  E-value=0.061  Score=51.36  Aligned_cols=91  Identities=18%  Similarity=0.231  Sum_probs=64.0

Q ss_pred             CCCCccccccCHHHHHHHHhcCCCCCcEEEEec-----------------------------------------------
Q psy10852        284 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDS-----------------------------------------------  316 (563)
Q Consensus       284 ~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S-----------------------------------------------  316 (563)
                      ...+|++|.++++.++..|.-   .+.|+++.+                                               
T Consensus       199 ~k~pp~~g~l~~~~~q~~l~~---~a~~~a~~~~~~p~~~~ls~l~~~n~ppp~~p~~kl~~~~~~~n~~~~~~rd~~~~  275 (345)
T KOG3697|consen  199 SKMPPPGGFLDTRLKQRPLAP---DAAQFAGKEQTYPQGRHLSDLRQGNSPPPSTPEGKLHVAPTYVNTQQIPRRDLFDE  275 (345)
T ss_pred             ccCCCCCCccchhhhhccCCc---ccchhhhhccCCcccccccchhhcCCCCCCCCCccCCCCcccccccccchhhhccc
Confidence            356899999999988877653   244444432                                               


Q ss_pred             CCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeCCcccCChhhHHhhhhcccCC------CCccccccc
Q psy10852        317 NTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLD------TSPLIKPAT  382 (563)
Q Consensus       317 ~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~~~~f~sl~~lv~~y~~~~~~------~~~l~~P~~  382 (563)
                      ...+|.|+|+-..++..||..+.--...     ....++.|+|+..||+|+-.+.+.      ..+|..|+.
T Consensus       276 ~~~~gqyvltgl~~~~~khlllvdpegv-----vrtkd~~fdsishli~yh~~~~lpiis~~sel~l~~pv~  342 (345)
T KOG3697|consen  276 TTTPGQYVLTGLQSGQPKHLLLVDPEGV-----VRTKDRRFDSISHLINYHMDNHLPIISAGSELCLQQPVE  342 (345)
T ss_pred             cCCCccEEEecccCCCcceEEEECCccc-----eecccchhhHHHHHHHHhhhccCceecCcchhhhhCccc
Confidence            3457889999999999999876532211     444579999999999999887653      245566653

>KOG4384|consensus

Probab=94.04  E-value=0.063  Score=53.04  Aligned_cols=65  Identities=37%  Similarity=0.592  Sum_probs=58.9

Q ss_pred             ccccceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCCCC
Q psy10852        478 KLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET  542 (563)
Q Consensus       478 ~~~~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~~~  542 (563)
                      .....+++.-+++++.++.++|.++.||+|.++++..-|-|.|-++++.|-|+..||..+..++.
T Consensus       134 p~c~~~~~~t~~tp~p~~~d~lk~~~~~~i~~~~~~~~~~~~g~~~~kv~~f~~~~v~~~s~e~~  198 (361)
T KOG4384|consen  134 PFCGRARVHTDFTPSPYDTDSLKIKKGDIIDIIEKPPMGTWLGLLNNKVGSFKFIYVDVISEEEP  198 (361)
T ss_pred             CccccccccccCCCCcccccchhhcccchhhccccCccccccccccCcccccccceecccccccc
Confidence            34456889999999999999999999999999999999999999999999999999999976654

>COG3103 SH3 domain protein [Signal transduction mechanisms]

Probab=93.53  E-value=0.13  Score=47.88  Aligned_cols=105  Identities=16%  Similarity=0.167  Sum_probs=70.4

Q ss_pred             CCCCCCEEEEEEecCC-CcEEEEecCCcEEEEcCCCeEeccCCcccccccccCCCCCCCCCCCCCCCccccccccccccc
Q psy10852        403 PFKKNDILIVVSKDEE-HWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPA  481 (563)
Q Consensus       403 ~~~~g~~v~v~~~~~~-~W~~~~~~~g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  481 (563)
                      ++++|+.|.|+..... +|.+.+..+|+.||||..++..........                    +        ....
T Consensus        49 ~i~~Ge~vtvl~~~~~~~~~qI~~~~g~t~wi~~~~lt~e~s~~~~~--------------------p--------~~~~  100 (205)
T COG3103          49 SIKAGEKVTVLGTDGNTGYYQIRDSSGRTGWILSKNLTSEPSSNERV--------------------P--------DLEL  100 (205)
T ss_pred             EecCCcEEEEEEEcCcccEEEEEecCCceEEEechhhccccccceec--------------------C--------chhh
Confidence            5789999999999876 899998789999999998875332210000                    0        0000


Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCC
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT  539 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~  539 (563)
                      .+|.+..-.    ..-.=.++.|..+.+..+...+|.....+|+.||+-..|+..-..
T Consensus       101 nVr~~t~t~----~~v~g~~~~~t~~~~~sk~~~~w~~~~~~~k~~~vs~q~~~~~~~  154 (205)
T COG3103         101 NVRELTKTL----SNVDGTWKQGTAVMQISKTQNNWYIITLKGKNGYVSGQLVTAQSK  154 (205)
T ss_pred             hhhhcccch----hhhhhhhhcCcEEEEEeeccccchhhhhhcccchhhhhheecccc
Confidence            111111000    000124567889999998889999999999999999888865433

>smart00287 SH3b Bacterial SH3 domain homologues

Probab=93.28  E-value=0.15  Score=37.83  Aligned_cols=36  Identities=31%  Similarity=0.417  Sum_probs=30.0

Q ss_pred             CCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCe
Q psy10852        403 PFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV  438 (563)
Q Consensus       403 ~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v  438 (563)
                      .+..|+.|.|+...+++|++.+..+|+.||++..++
T Consensus        26 ~l~~g~~v~i~~~~~~~W~~v~~~~g~~Gwi~~~~~   61 (63)
T smart00287       26 TLKKGDKVKVLGVDGQDWAKITYGSGQRGYVPGYVV   61 (63)
T ss_pred             EecCCCEEEEEEccCCceEEEEcCCCCEEEEEeeee
Confidence            367899999999876699999865699999987765

>smart00287 SH3b Bacterial SH3 domain homologues

Probab=93.25  E-value=0.21  Score=36.96  Aligned_cols=38  Identities=24%  Similarity=0.168  Sum_probs=31.3

Q ss_pred             CeeccCCCEEEEEEeCCCCEEEEEeC-CeeeeecCCceE
Q psy10852        498 ALKLEIGDIIKVTKTNINGQWEGELN-GKTGHFPFTHVE  535 (563)
Q Consensus       498 eL~~~~gd~i~v~~~~~~~w~~g~~~-g~~G~~P~~~v~  535 (563)
                      --.+..|+.+.|+....++|+..+.. |.+||++..++.
T Consensus        24 ~~~l~~g~~v~i~~~~~~~W~~v~~~~g~~Gwi~~~~~~   62 (63)
T smart00287       24 IGTLKKGDKVKVLGVDGQDWAKITYGSGQRGYVPGYVVN   62 (63)
T ss_pred             eEEecCCCEEEEEEccCCceEEEEcCCCCEEEEEeeeec
Confidence            33578999999999765599999986 999999887764

>COG3103 SH3 domain protein [Signal transduction mechanisms]

Probab=93.00  E-value=0.19  Score=46.76  Aligned_cols=103  Identities=17%  Similarity=0.189  Sum_probs=70.9

Q ss_pred             cCCCCCEEEEEEecCC-CeeEEeeCCCeeeEEecCceeecccccccccccccccCCCCCCCCCCCCCccccccccccCc-
Q psy10852        128 PFKKNDILIVVSKDEE-HWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLP-  205 (563)
Q Consensus       128 s~~~Gd~i~vl~~~~~-~ww~g~~~~g~~G~fP~~yv~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p-  205 (563)
                      ++++|+.+.|+.+... +|.+.+-..|++|||+..++......-...|...+.+.                     .++ 
T Consensus        49 ~i~~Ge~vtvl~~~~~~~~~qI~~~~g~t~wi~~~~lt~e~s~~~~~p~~~~nVr---------------------~~t~  107 (205)
T COG3103          49 SIKAGEKVTVLGTDGNTGYYQIRDSSGRTGWILSKNLTSEPSSNERVPDLELNVR---------------------ELTK  107 (205)
T ss_pred             EecCCcEEEEEEEcCcccEEEEEecCCceEEEechhhccccccceecCchhhhhh---------------------hccc
Confidence            3789999999998765 89999989999999999988765432111111111110                     111 


Q ss_pred             cceeeeeccccCCCCCCceeeccCCEEEEeeecCCCceeeeeCCceeeccccceeecC
Q psy10852        206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP  263 (563)
Q Consensus       206 ~~~~~~~~~~~~a~~~~eLsf~~Gd~v~V~~~~~~~W~~g~~~g~~G~~P~~~ve~~~  263 (563)
                      ...+++            =.++.|..+.+..+..++|....++++.|++=..|+..-.
T Consensus       108 t~~~v~------------g~~~~~t~~~~~sk~~~~w~~~~~~~k~~~vs~q~~~~~~  153 (205)
T COG3103         108 TLSNVD------------GTWKQGTAVMQISKTQNNWYIITLKGKNGYVSGQLVTAQS  153 (205)
T ss_pred             chhhhh------------hhhhcCcEEEEEeeccccchhhhhhcccchhhhhheeccc
Confidence            011111            1356788889999888999999999999999987775443

>KOG3508|consensus

Probab=91.33  E-value=0.17  Score=56.65  Aligned_cols=120  Identities=19%  Similarity=0.235  Sum_probs=73.3

Q ss_pred             CCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEE-CCeEEEEEEEEecCCCcceEEEeCCceecChHhhH
Q psy10852         11 NSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKE-NNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLL   89 (563)
Q Consensus        11 ~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~-~~~v~h~~I~~~~~~~~~~~~~~~~~~F~sl~~Li   89 (563)
                      ..||||++.|.-++.+++.....|.|+||++...++.+.+++-- -+.+.|+++.-.... ... |.-+.-.|..++-| 
T Consensus        81 ~~~~~~~lrr~i~e~r~r~~e~s~~~wi~e~~~lp~~~~l~~~~~~d~~l~~r~~s~~~~-s~v-l~gE~~~f~~lPpl-  157 (932)
T KOG3508|consen   81 RKWYMENLRRTIAESRLRRAENSGSYWIREAKRLPGKGKLSCLLQLDGTLYARTISKCGT-SNV-LWGENFLFPVLPPL-  157 (932)
T ss_pred             hhhhhcchhhhcccchhhccCCceeEEeeccCcCCCcceeehhhccchhHHhhhhhhccc-chh-ccccccccccCCcc-
Confidence            36999999999999998875555999999999999999988743 233888877643321 000 11111223322211 


Q ss_pred             HhhhcccCCCccccccccccceeeeecccCCC-CCCCCCcCCCCCEEEEEEecCCCeeEEe
Q psy10852         90 AFYKVHYLDTSPLIKPATKTIEKVIAKYDFDG-NDPDDLPFKKNDILIVVSKDEEHWWTAQ  149 (563)
Q Consensus        90 ~~y~~~~~~~~~L~~p~~~~~~~~~a~~d~~~-~~~~eLs~~~Gd~i~vl~~~~~~ww~g~  149 (563)
                               ....       ...+++...+.. .+.+++.+.+|+...+-....+.|+...
T Consensus       158 ---------~~~~-------~~~~~~i~~~~k~~~n~~l~~~~~~~f~~~~~~~d~w~~v~  202 (932)
T KOG3508|consen  158 ---------PVVD-------VLRVRAILPKKKKPTNDEIGFVKGDEFPVHRDLEDGWYWVT  202 (932)
T ss_pred             ---------chhh-------hhhhhhhhhhhccCcccccccccchhheecccccceeEEee
Confidence                     0000       112333333332 3456888888888777766777786654

>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=91.20  E-value=0.59  Score=33.58  Aligned_cols=36  Identities=22%  Similarity=0.285  Sum_probs=30.3

Q ss_pred             CeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCce
Q psy10852        498 ALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHV  534 (563)
Q Consensus       498 eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v  534 (563)
                      -..+.+|.++.|++ ..++|...+.+|..||++...|
T Consensus        18 v~~l~~g~~v~v~~-~~~~W~~V~~~g~~GWv~~~~l   53 (55)
T PF06347_consen   18 VARLEPGVPVRVIE-CRGGWCKVRADGRTGWVHKSLL   53 (55)
T ss_pred             EEEECCCCEEEEEE-ccCCeEEEEECCeEEeEEeeec
Confidence            45678899999996 5679999999999999998765

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.

>KOG3565|consensus

Probab=91.12  E-value=0.057  Score=59.13  Aligned_cols=58  Identities=26%  Similarity=0.551  Sum_probs=51.4

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEec-CCCcEEEE-ecCCcEEEEcCCCeEecc
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD-EEHWWTAQ-NISGEVGSIPVPYVQKYS  442 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~-~~~W~~~~-~~~g~~G~~P~~~v~~~~  442 (563)
                      ...+.|+|.|.+..++++++.+|+++.|++.. .+||=+++ ..++..|.||++|++.+.
T Consensus       578 ~~~~~a~~~~~~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~~~  637 (640)
T KOG3565|consen  578 IRTSKALYAFEGQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDVTE  637 (640)
T ss_pred             ccceecccCcCCCCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCcccccccc
Confidence            56899999999999999999999999999877 56898887 468999999999998654

>PRK10884 SH3 domain-containing protein; Provisional

Probab=90.86  E-value=0.25  Score=46.29  Aligned_cols=41  Identities=7%  Similarity=0.224  Sum_probs=34.5

Q ss_pred             CCCCCCEEEEEEecC-CCcEEEEecCCcEEEEcCCCeEeccC
Q psy10852        403 PFKKNDILIVVSKDE-EHWWTAQNISGEVGSIPVPYVQKYSE  443 (563)
Q Consensus       403 ~~~~g~~v~v~~~~~-~~W~~~~~~~g~~G~~P~~~v~~~~~  443 (563)
                      ++..|+.|+|++..+ .+|.+++..+|+.||++..|+.....
T Consensus        49 ~l~~G~~v~vl~~~~~~~w~~Vr~~~G~~GWV~~~~Ls~~p~   90 (206)
T PRK10884         49 TLNAGEEVTLLQVNANTNYAQIRDSKGRTAWIPLKQLSTTPS   90 (206)
T ss_pred             EEcCCCEEEEEEEcCCCCEEEEEeCCCCEEeEEHHHhcCCcc
Confidence            467899999999876 58999987799999999999875543

>PRK10884 SH3 domain-containing protein; Provisional

Probab=89.88  E-value=0.33  Score=45.47  Aligned_cols=40  Identities=18%  Similarity=0.341  Sum_probs=33.8

Q ss_pred             eccCCCEEEEEEeCC-CCEEEEEe-CCeeeeecCCceEEcCC
Q psy10852        500 KLEIGDIIKVTKTNI-NGQWEGEL-NGKTGHFPFTHVEFIPT  539 (563)
Q Consensus       500 ~~~~gd~i~v~~~~~-~~w~~g~~-~g~~G~~P~~~v~~~~~  539 (563)
                      ++..|+.|+|++..+ .||...+. +|++||++..||...+.
T Consensus        49 ~l~~G~~v~vl~~~~~~~w~~Vr~~~G~~GWV~~~~Ls~~p~   90 (206)
T PRK10884         49 TLNAGEEVTLLQVNANTNYAQIRDSKGRTAWIPLKQLSTTPS   90 (206)
T ss_pred             EEcCCCEEEEEEEcCCCCEEEEEeCCCCEEeEEHHHhcCCcc
Confidence            678999999999776 68999985 68999999999976543

>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=88.88  E-value=0.7  Score=33.19  Aligned_cols=35  Identities=11%  Similarity=0.229  Sum_probs=28.7

Q ss_pred             CCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCe
Q psy10852        402 LPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV  438 (563)
Q Consensus       402 l~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v  438 (563)
                      ..+.+|..+.|+. +.++|.+.+ .+|..||++.+.|
T Consensus        19 ~~l~~g~~v~v~~-~~~~W~~V~-~~g~~GWv~~~~l   53 (55)
T PF06347_consen   19 ARLEPGVPVRVIE-CRGGWCKVR-ADGRTGWVHKSLL   53 (55)
T ss_pred             EEECCCCEEEEEE-ccCCeEEEE-ECCeEEeEEeeec
Confidence            3467888999884 457999998 8999999998765

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.

>KOG3812|consensus

Probab=86.97  E-value=0.25  Score=48.39  Aligned_cols=49  Identities=29%  Similarity=0.662  Sum_probs=39.1

Q ss_pred             EEEeecccCCCCC-------CCCCCCCCEEEEEEecCCCcEEEEec--CCcEEEEcCC
Q psy10852        388 VIAKYDFDGNDPD-------DLPFKKNDILIVVSKDEEHWWTAQNI--SGEVGSIPVP  436 (563)
Q Consensus       388 ~~a~~~y~~~~~~-------el~~~~g~~v~v~~~~~~~W~~~~~~--~g~~G~~P~~  436 (563)
                      +++.-+|.+.-++       .++|..-|.|.|.++.+++||.|+..  ++..||+|..
T Consensus        61 V~tnv~Y~gslde~~Pv~g~aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPsp  118 (475)
T KOG3812|consen   61 VRTNVSYDGSLDEDSPVQGHAISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSP  118 (475)
T ss_pred             EEeccccCCccCCCCCCCCceeeeccccceeehhhcccchhHHHHhhcCCccccccch
Confidence            4455667665544       58999999999999999999999643  7899999973

>KOG3705|consensus

Probab=86.35  E-value=0.61  Score=46.88  Aligned_cols=56  Identities=16%  Similarity=0.116  Sum_probs=46.5

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEec-CCcEEEEcCCCeEec
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKY  441 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~-~g~~G~~P~~~v~~~  441 (563)
                      ...+++++..++..+||.++.||+|-|-+.--+|.=+|++. .++.|+||+--|++.
T Consensus       510 Hn~ivi~aH~prt~~ei~l~vGD~vgvAGNHWdGySKG~Nr~t~~~GlfPSyKvrek  566 (580)
T KOG3705|consen  510 HNVIVIEAHIPRTNKEIDLKVGDKVGVAGNHWDGYSKGTNRQTYKEGLFPSYKVREK  566 (580)
T ss_pred             cceEEEEecCCCcccccCcccCCeeeecccccccccccccccccccCCCccceeeee
Confidence            45789999999999999999999999987665666677654 689999999777654

>KOG0040|consensus

Probab=84.12  E-value=0.033  Score=64.04  Aligned_cols=58  Identities=14%  Similarity=0.230  Sum_probs=51.6

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~  540 (563)
                      .++.++|+|.  ..++.+.+.+.||+.+.+.-.+-.||..+++.+.|++|+.||+.+.++
T Consensus       969 ~~v~alyd~q--~kSprev~mKkgDvltll~s~nkdwwkve~~d~qg~vpa~yvk~~~~~ 1026 (2399)
T KOG0040|consen  969 ECVLALYDYQ--EKSPREVTMKKGDVLTLLNSINKDWWKVEVNDRQGFVPAAYVKRLDPG 1026 (2399)
T ss_pred             HHHHHHHHHH--hcCHHHHHHhhhhHHHHHhhcccccccchhhhhcCcchHHHHHHhccC
Confidence            3455677776  777999999999999999988899999999999999999999999877

>PF02762 Cbl_N3: CBL proto-oncogene N-terminus, SH2-like domain; InterPro: IPR014742 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface

Probab=83.81  E-value=6.6  Score=29.93  Aligned_cols=43  Identities=26%  Similarity=0.393  Sum_probs=34.7

Q ss_pred             CccccCCCHHHHHHHHcC-CCCCCeEEEEecCCCCcceEEEEEE
Q psy10852         12 SWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKE   54 (563)
Q Consensus        12 ~w~~g~i~r~~ae~~L~~-~~~~G~FLvR~s~~~~~~~~lsv~~   54 (563)
                      +=|...|+=+|+.+.|+. ....|+|+.|-|-++.|..++-+..
T Consensus         3 pgY~AFlTYdevk~~L~~~~~kpGsYiFRlSCTrLGQWAIGyV~   46 (86)
T PF02762_consen    3 PGYMAFLTYDEVKARLQHYRDKPGSYIFRLSCTRLGQWAIGYVT   46 (86)
T ss_dssp             TTBETT--HHHHHHHHGGGTTSTTEEEEEEESSSTTSEEEEEEE
T ss_pred             CceeEEEeHHHHHHHHHHHhCCcccEEEeeccccccceeEEEEc
Confidence            457778999999999988 3445999999999989999998765

The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the SH2-like domain.; PDB: 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B 3BUW_B ....

>KOG0040|consensus

Probab=83.71  E-value=0.039  Score=63.46  Aligned_cols=58  Identities=29%  Similarity=0.755  Sum_probs=53.0

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ..+.|+|+|....+.+.+.++||+++.+......||.++ ++.+.|++|+.||+.+...
T Consensus       969 ~~v~alyd~q~kSprev~mKkgDvltll~s~nkdwwkve-~~d~qg~vpa~yvk~~~~~ 1026 (2399)
T KOG0040|consen  969 ECVLALYDYQEKSPREVTMKKGDVLTLLNSINKDWWKVE-VNDRQGFVPAAYVKRLDPG 1026 (2399)
T ss_pred             HHHHHHHHHHhcCHHHHHHhhhhHHHHHhhcccccccch-hhhhcCcchHHHHHHhccC
Confidence            356789999999999999999999999998889999998 8899999999999988765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	563
2eyz_A	304	Ct10-Regulated Kinase Isoform Ii Length = 304		6e-69
2eyz_A	304	Ct10-Regulated Kinase Isoform Ii Length = 304		6e-69
2lqw_A	303	Solution Structure Of Phosphorylated Crkl Length =		1e-68
2lqw_A	303	Solution Structure Of Phosphorylated Crkl Length =		1e-68
2lqn_A	303	Solution Structure Of Crkl Length = 303		1e-68
2lqn_A	303	Solution Structure Of Crkl Length = 303		1e-68
2dvj_A	230	Phosphorylated Crk-Ii Length = 230		1e-44
2dvj_A	230	Phosphorylated Crk-Ii Length = 230		1e-44
2eyy_A	204	Ct10-Regulated Kinase Isoform I Length = 204		2e-44
2eyy_A	204	Ct10-Regulated Kinase Isoform I Length = 204		2e-44
2l3s_A	163	Structure Of The Autoinhibited Crk Length = 163		1e-38
2l3s_A	163	Structure Of The Autoinhibited Crk Length = 163		1e-38
3qwy_A	308	Ced-2 Length = 308		6e-35
3qwy_A	308	Ced-2 Length = 308		6e-35
2eo3_A	111	Solution Structure Of The Sh2 Domain From Human Crk		3e-26
2eo3_A	111	Solution Structure Of The Sh2 Domain From Human Crk		3e-26
2eyv_A	124	Sh2 Domain Of Ct10-Regulated Kinase Length = 124		2e-23
2eyv_A	124	Sh2 Domain Of Ct10-Regulated Kinase Length = 124		2e-23
3qwx_X	174	Ced-2 1-174 Length = 174		6e-23
3qwx_X	174	Ced-2 1-174 Length = 174		6e-23
1ju5_A	109	Ternary Complex Of An Crk Sh2 Domain, Crk-Derived P		3e-21
1ju5_A	109	Ternary Complex Of An Crk Sh2 Domain, Crk-Derived P		3e-21
2eyx_A	67	C-Terminal Sh3 Domain Of Ct10-Regulated Kinase Leng		4e-20
2eyx_A	67	C-Terminal Sh3 Domain Of Ct10-Regulated Kinase Leng		4e-20
2l3p_A	78	Structure Of The Prolyl Cis Isomer Of The Crk Prote		6e-20
2l3p_A	78	Structure Of The Prolyl Cis Isomer Of The Crk Prote		6e-20
2ggr_A	76	Solution Structure Of The C-Terminal Sh3 Domain Of		6e-20
2ggr_A	76	Solution Structure Of The C-Terminal Sh3 Domain Of		6e-20
2dbk_A	88	Solution Structures Of The Sh3 Domain Of Human Crk-		4e-19
2bzx_A	67	Atomic Model Of Crkl-Sh3c Monomer Length = 67		7e-19
2bzx_A	67	Atomic Model Of Crkl-Sh3c Monomer Length = 67		7e-19
1gri_A	217	Grb2 Length = 217		1e-15
1gri_A	217	Grb2 Length = 217		4e-04
2eyw_A	78	N-Terminal Sh3 Domain Of Ct10-Regulated Kinase Leng		5e-14
2eyw_A	78	N-Terminal Sh3 Domain Of Ct10-Regulated Kinase Leng		5e-14
1m3c_A	60	Solution Structure Of A Circular Form Of The N-Term		1e-13
1m3c_A	60	Solution Structure Of A Circular Form Of The N-Term		1e-13
1m30_A	58	Solution Structure Of N-Terminal Sh3 Domain From On		1e-13
1m30_A	58	Solution Structure Of N-Terminal Sh3 Domain From On		1e-13
1b07_A	65	Crk Sh3 Domain Complexed With Peptoid Inhibitor Len		1e-13
1b07_A	65	Crk Sh3 Domain Complexed With Peptoid Inhibitor Len		1e-13
1cka_A	57	Structural Basis For The Specific Interaction Of Ly		2e-13
1cka_A	57	Structural Basis For The Specific Interaction Of Ly		2e-13
1m3b_A	58	Solution Structure Of A Circular Form Of The N-Term		3e-13
1m3b_A	58	Solution Structure Of A Circular Form Of The N-Term		3e-13
1m3a_A	57	Solution Structure Of A Circular Form Of The Trunca		4e-13
1m3a_A	57	Solution Structure Of A Circular Form Of The Trunca		4e-13
4f59_A	112	Triple Mutant Src Sh2 Domain Length = 112		3e-09
4f59_A	112	Triple Mutant Src Sh2 Domain Length = 112		3e-09
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		5e-09
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		5e-04
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		6e-09
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		6e-05
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		1e-08
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		2e-04
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		1e-08
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		2e-04
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		1e-08
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		2e-04
1bkm_A	113	Cocrystal Structure Of D-Amino Acid Substituted Pho		3e-08
1bkm_A	113	Cocrystal Structure Of D-Amino Acid Substituted Pho		3e-08
1bkl_A	113	Self-Associated Apo Src Sh2 Domain Length = 113		7e-08
1bkl_A	113	Self-Associated Apo Src Sh2 Domain Length = 113		7e-08
1kc2_A	103	Structure Of The Triple (Lys(Beta)d3ala, Asp(Beta)c		7e-08
1kc2_A	103	Structure Of The Triple (Lys(Beta)d3ala, Asp(Beta)c		7e-08
1p13_A	102	Crystal Structure Of The Src Sh2 Domain Complexed W		9e-08
1p13_A	102	Crystal Structure Of The Src Sh2 Domain Complexed W		9e-08
1nzl_A	103	Crystal Structure Of Src Sh2 Domain Bound To Doubly		1e-07
1nzl_A	103	Crystal Structure Of Src Sh2 Domain Bound To Doubly		1e-07
1sha_A	104	Crystal Structure Of The Phosphotyrosine Recognitio		1e-07
1sha_A	104	Crystal Structure Of The Phosphotyrosine Recognitio		1e-07
1skj_A	113	Cocrystal Structure Of Urea-Substituted Phosphopept		1e-07
1skj_A	113	Cocrystal Structure Of Urea-Substituted Phosphopept		1e-07
1is0_A	106	Crystal Structure Of A Complex Of The Src Sh2 Domai		1e-07
1is0_A	106	Crystal Structure Of A Complex Of The Src Sh2 Domai		1e-07
1f1w_A	104	Src Sh2 Thref1trp Mutant Complexed With The Phospho		1e-07
1f1w_A	104	Src Sh2 Thref1trp Mutant Complexed With The Phospho		1e-07
1shd_A	107	Peptide Inhibitors Of Src Sh3-Sh2-Phosphoprotein In		2e-07
1shd_A	107	Peptide Inhibitors Of Src Sh3-Sh2-Phosphoprotein In		2e-07
1o41_A	108	Crystal Structure Of Sh2 In Complex With Ru78300. L		2e-07
1o41_A	108	Crystal Structure Of Sh2 In Complex With Ru78300. L		2e-07
1a1a_A	107	C-Src (Sh2 Domain With C188a Mutation) Complexed Wi		4e-07
1a1a_A	107	C-Src (Sh2 Domain With C188a Mutation) Complexed Wi		4e-07
1o4c_A	108	Crystal Structure Of Sh2 In Complex With Phosphate.		4e-07
1o4c_A	108	Crystal Structure Of Sh2 In Complex With Phosphate.		4e-07
2kk6_A	116	Solution Structure Of Sh2 Domain Of Proto-Oncogene		5e-07
2kk6_A	116	Solution Structure Of Sh2 Domain Of Proto-Oncogene		5e-07
2abl_A	163	Sh3-Sh2 Domain Fragment Of Human Bcr-Abl Tyrosine K		6e-07
1opl_A	537	Structural Basis For The Auto-Inhibition Of C-Abl T		6e-07
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		6e-07
2fo0_A	495	Organization Of The Sh3-Sh2 Unit In Active And Inac		7e-07
1jeg_A	83	Solution Structure Of The Sh3 Domain From C-Termina		1e-06
1jeg_A	83	Solution Structure Of The Sh3 Domain From C-Termina		1e-06
1s1n_A	68	Sh3 Domain Of Human Nephrocystin Length = 68		1e-06
1s1n_A	68	Sh3 Domain Of Human Nephrocystin Length = 68		1e-06
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		1e-06
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		1e-06
2yun_A	79	Solution Structure Of The Sh3 Domain Of Human Nostr		2e-06
1csk_A	71	The Crystal Structure Of Human Csksh3: Structural D		2e-06
1csk_A	71	The Crystal Structure Of Human Csksh3: Structural D		2e-06
2ci9_A	102	Nck1 Sh2-Domain In Complex With A Dodecaphosphopept		2e-06
2ci9_A	102	Nck1 Sh2-Domain In Complex With A Dodecaphosphopept		2e-06
2ci8_A	99	Sh2 Domain Of Human Nck1 Adaptor Protein - Uncomple		2e-06
2ci8_A	99	Sh2 Domain Of Human Nck1 Adaptor Protein - Uncomple		2e-06
1a81_A	254	Crystal Structure Of The Tandem Sh2 Domain Of The S		5e-06
1a81_A	254	Crystal Structure Of The Tandem Sh2 Domain Of The S		5e-06
1csy_A	112	Syk Tyrosine Kinase C-Terminal Sh2 Domain Complexed		5e-06
1csy_A	112	Syk Tyrosine Kinase C-Terminal Sh2 Domain Complexed		5e-06
1fyr_A	114	Dimer Formation Through Domain Swapping In The Crys		6e-06
1fyr_A	114	Dimer Formation Through Domain Swapping In The Crys		6e-06
1ghu_A	107	Nmr Solution Structure Of Growth Factor Receptor-Bo		6e-06
1ghu_A	107	Nmr Solution Structure Of Growth Factor Receptor-Bo		6e-06
4fl3_A	635	Structural And Biophysical Characterization Of The		7e-06
4fl3_A	635	Structural And Biophysical Characterization Of The		7e-06
4fl2_A	636	Structural And Biophysical Characterization Of The		7e-06
4fl2_A	636	Structural And Biophysical Characterization Of The		7e-06
2dly_A	121	Solution Structure Of The Sh2 Domain Of Murine Fyn-		7e-06
2dly_A	121	Solution Structure Of The Sh2 Domain Of Murine Fyn-		7e-06
1jyq_A	96	Xray Structure Of Grb2 Sh2 Domain Complexed With A		7e-06
1jyq_A	96	Xray Structure Of Grb2 Sh2 Domain Complexed With A		7e-06
3eaz_A	106	Crystal Structure Of Sh2 Domain Of Human Csk (Carbo		9e-06
3eaz_A	106	Crystal Structure Of Sh2 Domain Of Human Csk (Carbo		9e-06
2lmj_A	66	Itk-Sh3 Length = 66		1e-05
2lmj_A	66	Itk-Sh3 Length = 66		1e-05
1cj1_A	96	Growth Factor Receptor Binding Protein Sh2 Domain (		1e-05
1cj1_A	96	Growth Factor Receptor Binding Protein Sh2 Domain (		1e-05
1tze_E	98	Signal Transduction Adaptor Growth Factor, Grb2 Sh2		1e-05
1tze_E	98	Signal Transduction Adaptor Growth Factor, Grb2 Sh2		1e-05
2aoa_A	99	Crystal Structures Of A High-affinity Macrocyclic P		1e-05
2aoa_A	99	Crystal Structures Of A High-affinity Macrocyclic P		1e-05
3mxc_A	101	Structures Of Grb2-Sh2 Domain And Aicd Peptide Comp		1e-05
3mxc_A	101	Structures Of Grb2-Sh2 Domain And Aicd Peptide Comp		1e-05
2yuq_A	85	Solution Structure Of The Sh3 Domain Of Human Tyros		2e-05
2yuq_A	85	Solution Structure Of The Sh3 Domain Of Human Tyros		2e-05
1zfp_E	98	Growth Factor Receptor Binding Protein Sh2 Domain C		2e-05
1zfp_E	98	Growth Factor Receptor Binding Protein Sh2 Domain C		2e-05
1fhs_A	112	The Three-Dimensional Solution Structure Of The Src		2e-05
1fhs_A	112	The Three-Dimensional Solution Structure Of The Src		2e-05
3eac_A	106	Crystal Structure Of Sh2 Domain Of Human Csk (Carbo		2e-05
3eac_A	106	Crystal Structure Of Sh2 Domain Of Human Csk (Carbo		2e-05
3n84_A	112	Crystal Structure Of The Grb2 Sh2 Domain In Complex		2e-05
3n84_A	112	Crystal Structure Of The Grb2 Sh2 Domain In Complex		2e-05
1udl_A	98	The Solution Structure Of The Fifth Sh3 Domain Of I		2e-05
1udl_A	98	The Solution Structure Of The Fifth Sh3 Domain Of I		2e-05
3ove_A	117	Crystal Structure Of The Grb2 Sh2 Domain In Complex		2e-05
3ove_A	117	Crystal Structure Of The Grb2 Sh2 Domain In Complex		2e-05
3imd_A	117	Crystal Structure Of The Grb2 Sh2 Domain In Complex		2e-05
3imd_A	117	Crystal Structure Of The Grb2 Sh2 Domain In Complex		2e-05
1bmb_A	123	Grb2-Sh2 Domain In Complex With KpfyVnvef (Pkf270-9		2e-05
1bmb_A	123	Grb2-Sh2 Domain In Complex With KpfyVnvef (Pkf270-9		2e-05
2h46_E	116	Native Domain-Swapped Dimer Crystal Structure Of Th		2e-05
2h46_E	116	Native Domain-Swapped Dimer Crystal Structure Of Th		2e-05
4ey0_A	246	Structure Of Tandem Sh2 Domains From Plcgamma1 Leng		2e-05
4ey0_A	246	Structure Of Tandem Sh2 Domains From Plcgamma1 Leng		2e-05
3gqi_B	226	Crystal Structure Of Activated Receptor Tyrosine Ki		2e-05
3gqi_B	226	Crystal Structure Of Activated Receptor Tyrosine Ki		2e-05
1x0n_A	104	Nmr Structure Of Growth Factor Receptor Binding Pro		2e-05
1x0n_A	104	Nmr Structure Of Growth Factor Receptor Binding Pro		2e-05
4fbn_A	246	Insights Into Structural Integration Of The Plcgamm		2e-05
4fbn_A	246	Insights Into Structural Integration Of The Plcgamm		2e-05
2cia_A	102	Human Nck2 Sh2-Domain In Complex With A Decaphospho		2e-05
2cia_A	102	Human Nck2 Sh2-Domain In Complex With A Decaphospho		2e-05
1g83_A	165	Crystal Structure Of Fyn Sh3-Sh2 Length = 165		2e-05
1g83_A	165	Crystal Structure Of Fyn Sh3-Sh2 Length = 165		5e-04
1bm2_A	117	Grb2-Sh2 Domain In Complex With Cyclo-[n-Alpha-Acet		2e-05
1bm2_A	117	Grb2-Sh2 Domain In Complex With Cyclo-[n-Alpha-Acet		2e-05
3uf4_A	164	Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn P		3e-05
3uf4_A	164	Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn P		5e-04
1z3k_A	98	Structural Insight Into The Binding Diversity Betwe		3e-05
1z3k_A	98	Structural Insight Into The Binding Diversity Betwe		3e-05
2ebp_A	73	Solution Structure Of The Sh3 Domain From Human Sam		3e-05
3gf9_A	295	Crystal Structure Of Human Intersectin 2 Rhogef Dom		3e-05
3gf9_A	295	Crystal Structure Of Human Intersectin 2 Rhogef Dom		3e-05
2drm_A	58	Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 L		4e-05
2drm_A	58	Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 L		4e-05
2gsb_A	119	Solution Structure Of The Second Sh2 Domain Of Huma		5e-05
2gsb_A	119	Solution Structure Of The Second Sh2 Domain Of Huma		5e-05
1oot_A	60	Crystal Structure Of The Sh3 Domain From A S. Cerev		5e-05
1oot_A	60	Crystal Structure Of The Sh3 Domain From A S. Cerev		5e-05
1ujy_A	76	Solution Structure Of Sh3 Domain In RacCDC42 GUANIN		5e-05
2fci_A	105	Structural Basis For The Requirement Of Two Phospho		5e-05
2fci_A	105	Structural Basis For The Requirement Of Two Phospho		5e-05
2ysx_A	119	Solution Structure Of The Human Ship Sh2 Domain Len		6e-05
2ysx_A	119	Solution Structure Of The Human Ship Sh2 Domain Len		6e-05
2yuo_A	78	Solution Structure Of The Sh3 Domain Of Mouse Run A		7e-05
2yuo_A	78	Solution Structure Of The Sh3 Domain Of Mouse Run A		7e-05
2dil_A	69	Solution Structure Of The Sh3 Domain Of The Human P		7e-05
2dil_A	69	Solution Structure Of The Sh3 Domain Of The Human P		7e-05
3jv3_A	283	Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l		8e-05
3jv3_A	283	Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l		8e-05
2ecd_A	119	Solution Structure Of The Human Abl2 Sh2 Domain Len		1e-04
2ecd_A	119	Solution Structure Of The Human Abl2 Sh2 Domain Len		1e-04
1gl5_A	67	Nmr Structure Of The Sh3 Domain From The Tec Protei		1e-04
1gl5_A	67	Nmr Structure Of The Sh3 Domain From The Tec Protei		1e-04
2ge9_A	125	Solution Structures Of The Sh2 Domain Of Bruton's T		1e-04
2ge9_A	125	Solution Structures Of The Sh2 Domain Of Bruton's T		1e-04
2drk_A	59	Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 L		1e-04
2drk_A	59	Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 L		1e-04
2aug_A	126	Crystal Structure Of The Grb14 Sh2 Domain Length =		1e-04
2aug_A	126	Crystal Structure Of The Grb14 Sh2 Domain Length =		1e-04
3nhn_A	193	Crystal Structure Of The Src-Family Kinase Hck Sh3-		1e-04
2xmf_A	60	Myosin 1e Sh3 Length = 60		2e-04
2xmf_A	60	Myosin 1e Sh3 Length = 60		2e-04
1ad5_A	438	Src Family Kinase Hck-Amp-Pnp Complex Length = 438		2e-04
1ad5_A	438	Src Family Kinase Hck-Amp-Pnp Complex Length = 438		2e-04
1rja_A	100	Solution Structure And Backbone Dynamics Of The Non		2e-04
1rja_A	100	Solution Structure And Backbone Dynamics Of The Non		2e-04
1qcf_A	454	Crystal Structure Of Hck In Complex With A Src Fami		2e-04
1qcf_A	454	Crystal Structure Of Hck In Complex With A Src Fami		2e-04
2d8h_A	80	Solution Structure Of The Sh3 Domain Of Hypothetica		2e-04
2d8h_A	80	Solution Structure Of The Sh3 Domain Of Hypothetica		2e-04
2a08_A	60	Structure Of The Yeast Yhh6 Sh3 Domain Length = 60		2e-04
2a08_A	60	Structure Of The Yeast Yhh6 Sh3 Domain Length = 60		2e-04
1aya_A	101	Crystal Structures Of Peptide Complexes Of The Amin		2e-04
1aya_A	101	Crystal Structures Of Peptide Complexes Of The Amin		2e-04
1tce_A	107	Solution Nmr Structure Of The Shc Sh2 Domain Comple		2e-04
1tce_A	107	Solution Nmr Structure Of The Shc Sh2 Domain Comple		2e-04
1aot_F	106	Nmr Structure Of The Fyn Sh2 Domain Complexed With		2e-04
1aot_F	106	Nmr Structure Of The Fyn Sh2 Domain Complexed With		2e-04
2eob_A	124	Solution Structure Of The Second Sh2 Domain From Ra		2e-04
2eob_A	124	Solution Structure Of The Second Sh2 Domain From Ra		2e-04
2i0n_A	80	Structure Of Dictyostelium Discoideum Myosin Vii Sh		2e-04
2i0n_A	80	Structure Of Dictyostelium Discoideum Myosin Vii Sh		2e-04
3tl0_A	109	Structure Of Shp2 N-Sh2 Domain In Complex With Rlnp		2e-04
3tl0_A	109	Structure Of Shp2 N-Sh2 Domain In Complex With Rlnp		2e-04
4gbq_A	74	Solution Nmr Structure Of The Grb2 N-Terminal Sh3 D		2e-04
4gbq_A	74	Solution Nmr Structure Of The Grb2 N-Terminal Sh3 D		2e-04
3haj_A	486	Crystal Structure Of Human Pacsin2 F-Bar Domain (P2		3e-04
3haj_A	486	Crystal Structure Of Human Pacsin2 F-Bar Domain (P2		3e-04
1ab2_A	109	Three-Dimensional Solution Structure Of The Src Hom		3e-04
1ab2_A	109	Three-Dimensional Solution Structure Of The Src Hom		3e-04
4hxj_A	60	Crystal Structure Of Sh3:rgt Complex Length = 60		3e-04
4hxj_A	60	Crystal Structure Of Sh3:rgt Complex Length = 60		3e-04
1mil_A	104	Transforming Protein Length = 104		3e-04
1mil_A	104	Transforming Protein Length = 104		3e-04
1qwe_A	64	C-Src Sh3 Domain Complexed With Ligand App12 Length		3e-04
1qwe_A	64	C-Src Sh3 Domain Complexed With Ligand App12 Length		3e-04
1prl_C	64	Two Binding Orientations For Peptides To Src Sh3 Do		4e-04
1prl_C	64	Two Binding Orientations For Peptides To Src Sh3 Do		4e-04
3hck_A	107	Nmr Ensemble Of The Uncomplexed Human Hck Sh2 Domai		4e-04
3hck_A	107	Nmr Ensemble Of The Uncomplexed Human Hck Sh2 Domai		4e-04
2shp_A	525	Tyrosine Phosphatase Shp-2 Length = 525		5e-04
2shp_A	525	Tyrosine Phosphatase Shp-2 Length = 525		5e-04
3s9k_A	118	Crystal Structure Of The Itk Sh2 Domain Length = 11		5e-04
3s9k_A	118	Crystal Structure Of The Itk Sh2 Domain Length = 11		5e-04
1wi7_A	68	Solution Structure Of The Sh3 Domain Of Sh3-Domain		6e-04
1wi7_A	68	Solution Structure Of The Sh3 Domain Of Sh3-Domain		6e-04
1uue_A	62	A-Spectrin Sh3 Domain (V44t, D48g Mutant) Length =		6e-04
1uue_A	62	A-Spectrin Sh3 Domain (V44t, D48g Mutant) Length =		6e-04
1awj_A	77	Intramolecular Itk-Proline Complex, Nmr, Minimized		6e-04
1awj_A	77	Intramolecular Itk-Proline Complex, Nmr, Minimized		6e-04
1avz_C	57	V-1 Nef Protein In Complex With Wild Type Fyn Sh3 D		6e-04
1avz_C	57	V-1 Nef Protein In Complex With Wild Type Fyn Sh3 D		6e-04
1bk2_A	57	A-Spectrin Sh3 Domain D48g Mutant Length = 57		6e-04
1bk2_A	57	A-Spectrin Sh3 Domain D48g Mutant Length = 57		6e-04
1aww_A	67	Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, 42 S		7e-04
1aww_A	67	Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, 42 S		7e-04
2l2p_A	66	Folding Intermediate Of The Fyn Sh3 A39vN53PV55L FR		7e-04
2l2p_A	66	Folding Intermediate Of The Fyn Sh3 A39vN53PV55L FR		7e-04
3ua6_A	64	Crystal Structure Of The Human Fyn Sh3 Domain Lengt		7e-04
3ua6_A	64	Crystal Structure Of The Human Fyn Sh3 Domain Lengt		7e-04
2k79_A	63	Solution Structure Of The Binary Complex Between Th		7e-04
2k79_A	63	Solution Structure Of The Binary Complex Between Th		7e-04
4esr_A	69	Molecular And Structural Characterization Of The Sh		7e-04
4esr_A	69	Molecular And Structural Characterization Of The Sh		7e-04
3k2m_A	112	Crystal Structure Of Monobody Ha4ABL1 SH2 DOMAIN CO		7e-04
3k2m_A	112	Crystal Structure Of Monobody Ha4ABL1 SH2 DOMAIN CO		7e-04
3fj5_A	57	Crystal Structure Of The C-Src-Sh3 Domain Length =		7e-04
3fj5_A	57	Crystal Structure Of The C-Src-Sh3 Domain Length =		7e-04
1fyn_A	62	Phosphotransferase Length = 62		7e-04
1fyn_A	62	Phosphotransferase Length = 62		7e-04
2x3w_D	60	Structure Of Mouse Syndapin I (Crystal Form 2) Leng		8e-04
2x3w_D	60	Structure Of Mouse Syndapin I (Crystal Form 2) Leng		8e-04
2rn8_A	64	Nmr Structure Note: Murine Itk Sh3 Domain Length =		8e-04
2rn8_A	64	Nmr Structure Note: Murine Itk Sh3 Domain Length =		8e-04
1a0n_B	69	Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene		8e-04
1a0n_B	69	Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene		8e-04
1shf_A	59	Crystal Structure Of The Sh3 Domain In Human Fyn; C		8e-04
1shf_A	59	Crystal Structure Of The Sh3 Domain In Human Fyn; C		8e-04
1i3z_A	103	Murine Eat2 Sh2 Domain In Complex With Slam Phospho		8e-04
1i3z_A	103	Murine Eat2 Sh2 Domain In Complex With Slam Phospho		8e-04
2yt6_A	109	Solution Structure Of The Sh3_1 Domain Of Yamaguchi		8e-04
2yt6_A	109	Solution Structure Of The Sh3_1 Domain Of Yamaguchi		8e-04
1m27_C	61	Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX		8e-04
1m27_C	61	Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX		8e-04
2o2o_A	92	Solution Structure Of Domain B From Human Cin85 Pro		8e-04
2o2o_A	92	Solution Structure Of Domain B From Human Cin85 Pro		8e-04
1azg_B	67	Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene		9e-04
1azg_B	67	Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene		9e-04
2crh_A	138	Solution Structure Of The Sh2 Domain Of Human Proto		9e-04
2crh_A	138	Solution Structure Of The Sh2 Domain Of Human Proto		9e-04

>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii Length = 304

Iteration: 1
 Score =  258 bits (659), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 136/295 (46%), Positives = 180/295 (61%), Gaps = 34/295 (11%)
Query: 1   MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
           M G FD  +R+SWY+G ++RQEA A+L  ++ +G FLVRDS+T  G+YVL V EN++VSH
Sbjct: 1   MAGNFDSEERSSWYWGRLSRQEAVALLQGQR-HGVFLVRDSSTSPGDYVLSVSENSRVSH 59
Query: 61  YIINKITNTEQQ-------------TCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPAT 107
           YIIN                     +  +IGD+ F  LP+LL FYK+HYLDT+ LI+P +
Sbjct: 60  YIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVS 119
Query: 108 KT------------IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEV 155
           ++             E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ 
Sbjct: 120 RSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKR 179
Query: 156 GSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVP--QQQTTPVRKTHLEVKLP------AF 207
           G IPVPYV+KY    + +S         SH  P    +  P  +  +   LP       +
Sbjct: 180 GMIPVPYVEKYRPASASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIY 239
Query: 208 ARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
           ARV Q RVPNAYDKTAL LE+G+++KVTK N++GQWEGE NGK GHFPFTHV  +
Sbjct: 240 ARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLL 294

>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii Length = 304

Iteration: 1
 Score =  258 bits (659), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 136/295 (46%), Positives = 180/295 (61%), Gaps = 34/295 (11%)
Query: 276 MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 335
           M G FD  +R+SWY+G ++RQEA A+L  ++ +G FLVRDS+T  G+YVL V EN++VSH
Sbjct: 1   MAGNFDSEERSSWYWGRLSRQEAVALLQGQR-HGVFLVRDSSTSPGDYVLSVSENSRVSH 59
Query: 336 YIINKITNTEQQ-------------TCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPAT 382
           YIIN                     +  +IGD+ F  LP+LL FYK+HYLDT+ LI+P +
Sbjct: 60  YIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVS 119
Query: 383 KT------------IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEV 430
           ++             E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ 
Sbjct: 120 RSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKR 179
Query: 431 GSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVP--QQQTTPVRKTHLEVKLP------AF 482
           G IPVPYV+KY    + +S         SH  P    +  P  +  +   LP       +
Sbjct: 180 GMIPVPYVEKYRPASASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIY 239
Query: 483 ARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 537
           ARV Q RVPNAYDKTAL LE+G+++KVTK N++GQWEGE NGK GHFPFTHV  +
Sbjct: 240 ARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLL 294

>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl Length = 303

Iteration: 1
 Score =  257 bits (656), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 141/303 (46%), Positives = 186/303 (61%), Gaps = 46/303 (15%)
Query: 2   TGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 61
           +  FD  DR++WY G ++RQEAQ  L  ++ +G FLVRDS+T  G+YVL V EN++VSHY
Sbjct: 3   SARFDSSDRSAWYMGPVSRQEAQTRLQGQR-HGMFLVRDSSTCPGDYVLSVSENSRVSHY 61
Query: 62  IINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK------------- 108
           IIN + N      +KIGD+ F  LP+LL FYK+HYLDT+ LI+PA +             
Sbjct: 62  IINSLPNRR----FKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAPRYPSPPMGSVSAPN 117
Query: 109 ------TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPY 162
                  +E V   YDF GND +DLPFKK +IL+++ K EE WW+A+N  G VG IPVPY
Sbjct: 118 LPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPY 177
Query: 163 VQKYSEGMSILSLRNLHLDSSSHHVPQ--------QQTTPVRKTHLEVKL---------- 204
           V+K     S    ++ + +S+S+ +P+        Q TTP+                   
Sbjct: 178 VEKLVR--SSPHGKHGNRNSNSYGIPEPAHAXAQPQTTTPLPAVSGSPGAAITPLPSTQN 235
Query: 205 -PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE-FI 262
            P FA+  Q RVP AYDKTAL LE+GDI+KVT+ NINGQWEGE+NG+ G FPFTHV+ F 
Sbjct: 236 GPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFD 295
Query: 263 PTN 265
           P N
Sbjct: 296 PQN 298

>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl Length = 303

Iteration: 1
 Score =  257 bits (656), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 141/303 (46%), Positives = 186/303 (61%), Gaps = 46/303 (15%)
Query: 277 TGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 336
           +  FD  DR++WY G ++RQEAQ  L  ++ +G FLVRDS+T  G+YVL V EN++VSHY
Sbjct: 3   SARFDSSDRSAWYMGPVSRQEAQTRLQGQR-HGMFLVRDSSTCPGDYVLSVSENSRVSHY 61
Query: 337 IINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK------------- 383
           IIN + N      +KIGD+ F  LP+LL FYK+HYLDT+ LI+PA +             
Sbjct: 62  IINSLPNRR----FKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAPRYPSPPMGSVSAPN 117
Query: 384 ------TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPY 437
                  +E V   YDF GND +DLPFKK +IL+++ K EE WW+A+N  G VG IPVPY
Sbjct: 118 LPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPY 177
Query: 438 VQKYSEGMSILSLRNLHLDSSSHHVPQ--------QQTTPVRKTHLEVKL---------- 479
           V+K     S    ++ + +S+S+ +P+        Q TTP+                   
Sbjct: 178 VEKLVR--SSPHGKHGNRNSNSYGIPEPAHAXAQPQTTTPLPAVSGSPGAAITPLPSTQN 235
Query: 480 -PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE-FI 537
            P FA+  Q RVP AYDKTAL LE+GDI+KVT+ NINGQWEGE+NG+ G FPFTHV+ F 
Sbjct: 236 GPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFD 295
Query: 538 PTN 540
           P N
Sbjct: 296 PQN 298

>pdb|2LQN|A Chain A, Solution Structure Of Crkl Length = 303

Iteration: 1
 Score =  257 bits (656), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 141/303 (46%), Positives = 186/303 (61%), Gaps = 46/303 (15%)
Query: 2   TGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 61
           +  FD  DR++WY G ++RQEAQ  L  ++ +G FLVRDS+T  G+YVL V EN++VSHY
Sbjct: 3   SARFDSSDRSAWYMGPVSRQEAQTRLQGQR-HGMFLVRDSSTCPGDYVLSVSENSRVSHY 61
Query: 62  IINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK------------- 108
           IIN + N      +KIGD+ F  LP+LL FYK+HYLDT+ LI+PA +             
Sbjct: 62  IINSLPNRR----FKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAPRYPSPPMGSVSAPN 117
Query: 109 ------TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPY 162
                  +E V   YDF GND +DLPFKK +IL+++ K EE WW+A+N  G VG IPVPY
Sbjct: 118 LPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPY 177
Query: 163 VQKYSEGMSILSLRNLHLDSSSHHVPQ--------QQTTPVRKTHLEVKL---------- 204
           V+K     S    ++ + +S+S+ +P+        Q TTP+                   
Sbjct: 178 VEKLVR--SSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQN 235
Query: 205 -PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE-FI 262
            P FA+  Q RVP AYDKTAL LE+GDI+KVT+ NINGQWEGE+NG+ G FPFTHV+ F 
Sbjct: 236 GPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFD 295
Query: 263 PTN 265
           P N
Sbjct: 296 PQN 298

>pdb|2LQN|A Chain A, Solution Structure Of Crkl Length = 303

Iteration: 1
 Score =  257 bits (656), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 141/303 (46%), Positives = 186/303 (61%), Gaps = 46/303 (15%)
Query: 277 TGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 336
           +  FD  DR++WY G ++RQEAQ  L  ++ +G FLVRDS+T  G+YVL V EN++VSHY
Sbjct: 3   SARFDSSDRSAWYMGPVSRQEAQTRLQGQR-HGMFLVRDSSTCPGDYVLSVSENSRVSHY 61
Query: 337 IINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK------------- 383
           IIN + N      +KIGD+ F  LP+LL FYK+HYLDT+ LI+PA +             
Sbjct: 62  IINSLPNRR----FKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAPRYPSPPMGSVSAPN 117
Query: 384 ------TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPY 437
                  +E V   YDF GND +DLPFKK +IL+++ K EE WW+A+N  G VG IPVPY
Sbjct: 118 LPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPY 177
Query: 438 VQKYSEGMSILSLRNLHLDSSSHHVPQ--------QQTTPVRKTHLEVKL---------- 479
           V+K     S    ++ + +S+S+ +P+        Q TTP+                   
Sbjct: 178 VEKLVR--SSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQN 235
Query: 480 -PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE-FI 537
            P FA+  Q RVP AYDKTAL LE+GDI+KVT+ NINGQWEGE+NG+ G FPFTHV+ F 
Sbjct: 236 GPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFD 295
Query: 538 PTN 540
           P N
Sbjct: 296 PQN 298

>pdb|2DVJ|A Chain A, Phosphorylated Crk-Ii Length = 230

Iteration: 1
 Score =  177 bits (450), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 89/191 (46%), Positives = 120/191 (62%), Gaps = 26/191 (13%)
Query: 1   MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
           M G FD  +R+SWY+G ++RQEA A+L  ++ +G FLVRDS+T  G+YVL V EN++VSH
Sbjct: 3   MAGNFDSEERSSWYWGRLSRQEAVALLQGQR-HGVFLVRDSSTSPGDYVLSVSENSRVSH 61
Query: 61  YIINKITNTEQQ-------------TCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPAT 107
           YIIN                     +  +IGD+ F  LP+LL FYK+HYLDT+ LI+P +
Sbjct: 62  YIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVS 121
Query: 108 KT------------IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEV 155
           ++             E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ 
Sbjct: 122 RSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKR 181
Query: 156 GSIPVPYVQKY 166
           G IPVPYV+KY
Sbjct: 182 GMIPVPYVEKY 192

>pdb|2DVJ|A Chain A, Phosphorylated Crk-Ii Length = 230

Iteration: 1
 Score =  177 bits (450), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 89/191 (46%), Positives = 120/191 (62%), Gaps = 26/191 (13%)
Query: 276 MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 335
           M G FD  +R+SWY+G ++RQEA A+L  ++ +G FLVRDS+T  G+YVL V EN++VSH
Sbjct: 3   MAGNFDSEERSSWYWGRLSRQEAVALLQGQR-HGVFLVRDSSTSPGDYVLSVSENSRVSH 61
Query: 336 YIINKITNTEQQ-------------TCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPAT 382
           YIIN                     +  +IGD+ F  LP+LL FYK+HYLDT+ LI+P +
Sbjct: 62  YIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVS 121
Query: 383 KT------------IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEV 430
           ++             E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ 
Sbjct: 122 RSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKR 181
Query: 431 GSIPVPYVQKY 441
           G IPVPYV+KY
Sbjct: 182 GMIPVPYVEKY 192

>pdb|2EYY|A Chain A, Ct10-Regulated Kinase Isoform I Length = 204

Iteration: 1
 Score =  177 bits (448), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 89/191 (46%), Positives = 120/191 (62%), Gaps = 26/191 (13%)
Query: 1   MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
           M G FD  +R+SWY+G ++RQEA A+L  ++ +G FLVRDS+T  G+YVL V EN++VSH
Sbjct: 1   MAGNFDSEERSSWYWGRLSRQEAVALLQGQR-HGVFLVRDSSTSPGDYVLSVSENSRVSH 59
Query: 61  YIINKITNTEQQ-------------TCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPAT 107
           YIIN                     +  +IGD+ F  LP+LL FYK+HYLDT+ LI+P +
Sbjct: 60  YIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVS 119
Query: 108 KT------------IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEV 155
           ++             E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ 
Sbjct: 120 RSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKR 179
Query: 156 GSIPVPYVQKY 166
           G IPVPYV+KY
Sbjct: 180 GMIPVPYVEKY 190

>pdb|2EYY|A Chain A, Ct10-Regulated Kinase Isoform I Length = 204

Iteration: 1
 Score =  177 bits (448), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 89/191 (46%), Positives = 120/191 (62%), Gaps = 26/191 (13%)
Query: 276 MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 335
           M G FD  +R+SWY+G ++RQEA A+L  ++ +G FLVRDS+T  G+YVL V EN++VSH
Sbjct: 1   MAGNFDSEERSSWYWGRLSRQEAVALLQGQR-HGVFLVRDSSTSPGDYVLSVSENSRVSH 59
Query: 336 YIINKITNTEQQ-------------TCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPAT 382
           YIIN                     +  +IGD+ F  LP+LL FYK+HYLDT+ LI+P +
Sbjct: 60  YIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVS 119
Query: 383 KT------------IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEV 430
           ++             E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ 
Sbjct: 120 RSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKR 179
Query: 431 GSIPVPYVQKY 441
           G IPVPYV+KY
Sbjct: 180 GMIPVPYVEKY 190

>pdb|2L3S|A Chain A, Structure Of The Autoinhibited Crk Length = 163

Iteration: 1
 Score =  157 bits (398), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 80/161 (49%), Positives = 103/161 (63%), Gaps = 8/161 (4%)
Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG 169
           +E V A +DF+GND +DLPFKK DIL +  K EE WW A+++ G+ G IPVPYV+K    
Sbjct: 1   VEYVRALFDFNGNDDEDLPFKKGDILKIRDKPEEQWWNAEDMDGKRGMIPVPYVEKCRPS 60
Query: 170 MSILSLRNLHLDSSSHHVP--QQQTTPVRKTHLEVKLPA------FARVKQVRVPNAYDK 221
            + +S        SSH  P    +  P  +  +   LP       +ARV Q RVPNAYDK
Sbjct: 61  SASVSTLTGGNQDSSHPQPLGGPEPGPYAQPSINTPLPNLQNGPFYARVIQKRVPNAYDK 120
Query: 222 TALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
           TAL LE+G+++KVTK N++GQWEGE NGK GHFPFTHV  +
Sbjct: 121 TALALEVGELVKVTKINMSGQWEGECNGKRGHFPFTHVRLL 161

>pdb|2L3S|A Chain A, Structure Of The Autoinhibited Crk Length = 163

Iteration: 1
 Score =  157 bits (398), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 80/161 (49%), Positives = 103/161 (63%), Gaps = 8/161 (4%)
Query: 385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG 444
           +E V A +DF+GND +DLPFKK DIL +  K EE WW A+++ G+ G IPVPYV+K    
Sbjct: 1   VEYVRALFDFNGNDDEDLPFKKGDILKIRDKPEEQWWNAEDMDGKRGMIPVPYVEKCRPS 60
Query: 445 MSILSLRNLHLDSSSHHVP--QQQTTPVRKTHLEVKLPA------FARVKQVRVPNAYDK 496
            + +S        SSH  P    +  P  +  +   LP       +ARV Q RVPNAYDK
Sbjct: 61  SASVSTLTGGNQDSSHPQPLGGPEPGPYAQPSINTPLPNLQNGPFYARVIQKRVPNAYDK 120
Query: 497 TALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 537
           TAL LE+G+++KVTK N++GQWEGE NGK GHFPFTHV  +
Sbjct: 121 TALALEVGELVKVTKINMSGQWEGECNGKRGHFPFTHVRLL 161

>pdb|3QWY|A Chain A, Ced-2 Length = 308

Iteration: 1
 Score =  145 bits (366), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 96/287 (33%), Positives = 144/287 (50%), Gaps = 32/287 (11%)
Query: 2   TGTFDPHDRNSWYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCVKE---NNK 57
           T  FDP +  S+YF  M+R+EA  +L   + + G FL+RDS+   G Y L V+E    N 
Sbjct: 32  TNGFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDSSRP-GEYSLTVREADEGNA 90
Query: 58  VSHYIINKITNTEQQTC---YKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK-TIEKV 113
           V HY+I +    E  T     KI +++F D+P+LL  +K+  L  + L+    K  IE V
Sbjct: 91  VCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVV 150
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSIL 173
           +  + F G    DLPF++ + L ++SK  + WW A+N  G  G +P  YVQ   E     
Sbjct: 151 VGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQIQME----- 205
Query: 174 SLRNLHLDSSSHHVP--------------QQQTTPVRKTHLEVKLPAFARVKQVRVPNAY 219
                H D +S                     +T      L+ +LPA A+V   RVPNAY
Sbjct: 206 ----FHNDRTSKGASQSSIGSSGGGAERFSSASTSSDNIELQPRLPAKAKVTFDRVPNAY 261
Query: 220 DKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNE 266
           D T L+++ G  + VT+   NG ++ EL+G+ G  P T++ F   +E
Sbjct: 262 DPTQLRVKKGQTVLVTQKMSNGMYKAELDGQIGSVPHTYLRFTAVSE 308

>pdb|3QWY|A Chain A, Ced-2 Length = 308

Iteration: 1
 Score =  145 bits (366), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 96/287 (33%), Positives = 144/287 (50%), Gaps = 32/287 (11%)
Query: 277 TGTFDPHDRNSWYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCVKE---NNK 332
           T  FDP +  S+YF  M+R+EA  +L   + + G FL+RDS+   G Y L V+E    N 
Sbjct: 32  TNGFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDSSRP-GEYSLTVREADEGNA 90
Query: 333 VSHYIINKITNTEQQTC---YKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK-TIEKV 388
           V HY+I +    E  T     KI +++F D+P+LL  +K+  L  + L+    K  IE V
Sbjct: 91  VCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVV 150
Query: 389 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSIL 448
           +  + F G    DLPF++ + L ++SK  + WW A+N  G  G +P  YVQ   E     
Sbjct: 151 VGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQIQME----- 205
Query: 449 SLRNLHLDSSSHHVP--------------QQQTTPVRKTHLEVKLPAFARVKQVRVPNAY 494
                H D +S                     +T      L+ +LPA A+V   RVPNAY
Sbjct: 206 ----FHNDRTSKGASQSSIGSSGGGAERFSSASTSSDNIELQPRLPAKAKVTFDRVPNAY 261
Query: 495 DKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNE 541
           D T L+++ G  + VT+   NG ++ EL+G+ G  P T++ F   +E
Sbjct: 262 DPTQLRVKKGQTVLVTQKMSNGMYKAELDGQIGSVPHTYLRFTAVSE 308

>pdb|2EO3|A Chain A, Solution Structure Of The Sh2 Domain From Human Crk-Like Protein Length = 111

Iteration: 1
 Score =  116 bits (291), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 57/104 (54%), Positives = 76/104 (73%), Gaps = 5/104 (4%)
Query: 5   FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 64
           FD  DR++WY G ++RQEAQ  L  ++ +G FLVRDS+T  G+YVL V EN++VSHYIIN
Sbjct: 13  FDSSDRSAWYMGPVSRQEAQTRLQGQR-HGMFLVRDSSTCPGDYVLSVSENSRVSHYIIN 71
Query: 65  KITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK 108
            + N      +KIGD+ F  LP+LL FYK+HYLDT+ LI+PA +
Sbjct: 72  SLPNRR----FKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAPR 111

>pdb|2EO3|A Chain A, Solution Structure Of The Sh2 Domain From Human Crk-Like Protein Length = 111

Iteration: 1
 Score =  116 bits (291), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 57/104 (54%), Positives = 76/104 (73%), Gaps = 5/104 (4%)
Query: 280 FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 339
           FD  DR++WY G ++RQEAQ  L  ++ +G FLVRDS+T  G+YVL V EN++VSHYIIN
Sbjct: 13  FDSSDRSAWYMGPVSRQEAQTRLQGQR-HGMFLVRDSSTCPGDYVLSVSENSRVSHYIIN 71
Query: 340 KITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK 383
            + N      +KIGD+ F  LP+LL FYK+HYLDT+ LI+PA +
Sbjct: 72  SLPNRR----FKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAPR 111

>pdb|2EYV|A Chain A, Sh2 Domain Of Ct10-Regulated Kinase Length = 124

Iteration: 1
 Score =  107 bits (266), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/117 (45%), Positives = 76/117 (64%), Gaps = 14/117 (11%)
Query: 6   DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
           D  +R+SWY+G ++RQEA A+L  ++ +G FLVRDS+T  G+YVL V EN++VSHYIIN 
Sbjct: 5   DSEERSSWYWGRLSRQEAVALLQGQR-HGVFLVRDSSTSPGDYVLSVSENSRVSHYIINS 63
Query: 66  ITNTEQQ-------------TCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKT 109
                               +  +IGD+ F  LP+LL FYK+HYLDT+ LI+P +++
Sbjct: 64  SGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSRS 120

>pdb|2EYV|A Chain A, Sh2 Domain Of Ct10-Regulated Kinase Length = 124

Iteration: 1
 Score =  107 bits (266), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/117 (45%), Positives = 76/117 (64%), Gaps = 14/117 (11%)
Query: 281 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 340
           D  +R+SWY+G ++RQEA A+L  ++ +G FLVRDS+T  G+YVL V EN++VSHYIIN 
Sbjct: 5   DSEERSSWYWGRLSRQEAVALLQGQR-HGVFLVRDSSTSPGDYVLSVSENSRVSHYIINS 63
Query: 341 ITNTEQQ-------------TCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKT 384
                               +  +IGD+ F  LP+LL FYK+HYLDT+ LI+P +++
Sbjct: 64  SGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSRS 120

>pdb|3QWX|X Chain X, Ced-2 1-174 Length = 174

Iteration: 1
 Score =  105 bits (263), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 63/171 (36%), Positives = 94/171 (54%), Gaps = 9/171 (5%)
Query: 2   TGTFDPHDRNSWYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCVKE---NNK 57
           T  FDP +  S+YF  M+R+EA  +L   + + G FL+RDS+   G Y L V+E    N 
Sbjct: 3   TNGFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDSSRP-GEYSLTVREADEGNA 61
Query: 58  VSHYIINKITNTEQQTC---YKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK-TIEKV 113
           V HY+I +    E  T     KI +++F D+P+LL  +K+  L  + L+    K  IE V
Sbjct: 62  VCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVV 121
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           +  + F G    DLPF++ + L ++SK  + WW A+N  G  G +P  YVQ
Sbjct: 122 VGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQ 172

>pdb|3QWX|X Chain X, Ced-2 1-174 Length = 174

Iteration: 1
 Score =  105 bits (263), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 63/171 (36%), Positives = 94/171 (54%), Gaps = 9/171 (5%)
Query: 277 TGTFDPHDRNSWYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCVKE---NNK 332
           T  FDP +  S+YF  M+R+EA  +L   + + G FL+RDS+   G Y L V+E    N 
Sbjct: 3   TNGFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDSSRP-GEYSLTVREADEGNA 61
Query: 333 VSHYIINKITNTEQQTC---YKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK-TIEKV 388
           V HY+I +    E  T     KI +++F D+P+LL  +K+  L  + L+    K  IE V
Sbjct: 62  VCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVV 121
Query: 389 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
           +  + F G    DLPF++ + L ++SK  + WW A+N  G  G +P  YVQ
Sbjct: 122 VGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQ 172

>pdb|1JU5|A Chain A, Ternary Complex Of An Crk Sh2 Domain, Crk-Derived Phophopeptide, And Abl Sh3 Domain By Nmr Spectroscopy Length = 109

Iteration: 1
 Score =  100 bits (248), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 51/110 (46%), Positives = 71/110 (64%), Gaps = 14/110 (12%)
Query: 12  SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 71
           SWY+G ++RQEA A+L  ++ +G FLVRDS+T  G+YVL V EN++VSHYIIN       
Sbjct: 1   SWYWGRLSRQEAVALLQGQR-HGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPP 59
Query: 72  Q-------------TCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK 108
                         +  +IGD+ F  LP+LL FYK+HYLDT+ LI+P ++
Sbjct: 60  VPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSR 109

>pdb|1JU5|A Chain A, Ternary Complex Of An Crk Sh2 Domain, Crk-Derived Phophopeptide, And Abl Sh3 Domain By Nmr Spectroscopy Length = 109

Iteration: 1
 Score =  100 bits (248), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 51/110 (46%), Positives = 71/110 (64%), Gaps = 14/110 (12%)
Query: 287 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 346
           SWY+G ++RQEA A+L  ++ +G FLVRDS+T  G+YVL V EN++VSHYIIN       
Sbjct: 1   SWYWGRLSRQEAVALLQGQR-HGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPP 59
Query: 347 Q-------------TCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK 383
                         +  +IGD+ F  LP+LL FYK+HYLDT+ LI+P ++
Sbjct: 60  VPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSR 109

>pdb|2EYX|A Chain A, C-Terminal Sh3 Domain Of Ct10-Regulated Kinase Length = 67

Iteration: 1
 Score = 96.3 bits (238), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 41/58 (70%), Positives = 49/58 (84%)
Query: 205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
           P +ARV Q RVPNAYDKTAL LE+G+++KVTK N++GQWEGE NGK GHFPFTHV  +
Sbjct: 6   PIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLL 63

>pdb|2EYX|A Chain A, C-Terminal Sh3 Domain Of Ct10-Regulated Kinase Length = 67

Iteration: 1
 Score = 96.3 bits (238), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 41/58 (70%), Positives = 49/58 (84%)
Query: 480 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 537
           P +ARV Q RVPNAYDKTAL LE+G+++KVTK N++GQWEGE NGK GHFPFTHV  +
Sbjct: 6   PIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLL 63

>pdb|2L3P|A Chain A, Structure Of The Prolyl Cis Isomer Of The Crk Protein Length = 78

Iteration: 1
 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 41/58 (70%), Positives = 49/58 (84%)
Query: 205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
           P +ARV Q RVPNAYDKTAL LE+G+++KVTK N++GQWEGE NGK GHFPFTHV  +
Sbjct: 19  PFYARVIQKRVPNAYDKTALALEVGELVKVTKINMSGQWEGECNGKRGHFPFTHVRLL 76

>pdb|2L3P|A Chain A, Structure Of The Prolyl Cis Isomer Of The Crk Protein Length = 78

Iteration: 1
 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 41/58 (70%), Positives = 49/58 (84%)
Query: 480 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 537
           P +ARV Q RVPNAYDKTAL LE+G+++KVTK N++GQWEGE NGK GHFPFTHV  +
Sbjct: 19  PFYARVIQKRVPNAYDKTALALEVGELVKVTKINMSGQWEGECNGKRGHFPFTHVRLL 76

>pdb|2GGR|A Chain A, Solution Structure Of The C-Terminal Sh3 Domain Of C-Crkii Length = 76

Iteration: 1
 Score = 95.5 bits (236), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 41/58 (70%), Positives = 49/58 (84%)
Query: 205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
           P +ARV Q RVPNAYDKTAL LE+G+++KVTK N++GQWEGE NGK GHFPFTHV  +
Sbjct: 9   PIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLL 66

>pdb|2GGR|A Chain A, Solution Structure Of The C-Terminal Sh3 Domain Of C-Crkii Length = 76

Iteration: 1
 Score = 95.5 bits (236), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 41/58 (70%), Positives = 49/58 (84%)
Query: 480 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 537
           P +ARV Q RVPNAYDKTAL LE+G+++KVTK N++GQWEGE NGK GHFPFTHV  +
Sbjct: 9   PIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLL 66

>pdb|2DBK|A Chain A, Solution Structures Of The Sh3 Domain Of Human Crk-Like Protein Length = 88

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 44/68 (64%), Positives = 52/68 (76%), Gaps = 1/68 (1%)
Query: 480 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE-FIP 538
           P FA+  Q RVP AYDKTAL LE+GDI+KVT+ NINGQWEGE+NG+ G FPFTHV+ F P
Sbjct: 16  PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDP 75
Query: 539 TNETSVET 546
            N    E+
Sbjct: 76  QNPDENES 83

>pdb|2BZX|A Chain A, Atomic Model Of Crkl-Sh3c Monomer Length = 67

Iteration: 1
 Score = 92.0 bits (227), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 43/62 (69%), Positives = 50/62 (80%), Gaps = 1/62 (1%)
Query: 205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE-FIP 263
           P FA+  Q RVP AYDKTAL LE+GDI+KVT+ NINGQWEGE+NG+ G FPFTHV+ F P
Sbjct: 1   PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDP 60
Query: 264 TN 265
            N
Sbjct: 61  QN 62

>pdb|2BZX|A Chain A, Atomic Model Of Crkl-Sh3c Monomer Length = 67

Iteration: 1
 Score = 92.0 bits (227), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 43/62 (69%), Positives = 50/62 (80%), Gaps = 1/62 (1%)
Query: 480 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE-FIP 538
           P FA+  Q RVP AYDKTAL LE+GDI+KVT+ NINGQWEGE+NG+ G FPFTHV+ F P
Sbjct: 1   PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDP 60
Query: 539 TN 540
            N
Sbjct: 61  QN 62

>pdb|1GRI|A Chain A, Grb2 Length = 217

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 102/223 (45%), Gaps = 37/223 (16%)
Query: 224 LKLEIGDIIKVTKTNINGQW-EGELNGKTGHFPFTHVEFIPTNETMPFHSSMKMTGTFDP 282
           L  + GDI+KV     +  W + ELNGK G  P  ++E  P                   
Sbjct: 17  LSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKP------------------- 57
Query: 283 HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKIT 342
              + W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+ + +  
Sbjct: 58  ---HPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLR-- 112
Query: 343 NTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEK-------VIAKYDFD 395
             +    Y +    F+ L  L+ +++   +  +  I    + IE+       V A +DFD
Sbjct: 113 --DGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQI--FLRDIEQVPQQPTYVQALFDFD 168
Query: 396 GNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 438
             +  +L F++ D + V+   + +WW      G+ G  P  YV
Sbjct: 169 PQEDGELGFRRGDFIHVMDNSDPNWWKGA-CHGQTGMFPRNYV 210

>pdb|1GRI|A Chain A, Grb2 Length = 217

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 33/53 (62%)
Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
           + IAKYDF     D+L FK+ DIL V++++ +  W    ++G+ G IP  Y++
Sbjct: 2   EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIE 54

>pdb|2EYW|A Chain A, N-Terminal Sh3 Domain Of Ct10-Regulated Kinase Length = 78

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/64 (53%), Positives = 44/64 (68%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM 170
           E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ G IPVPYV+KY    
Sbjct: 15  EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPAS 74
Query: 171 SILS 174
           + +S
Sbjct: 75  ASVS 78

>pdb|2EYW|A Chain A, N-Terminal Sh3 Domain Of Ct10-Regulated Kinase Length = 78

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/64 (53%), Positives = 44/64 (68%)
Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM 445
           E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ G IPVPYV+KY    
Sbjct: 15  EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPAS 74
Query: 446 SILS 449
           + +S
Sbjct: 75  ASVS 78

>pdb|1M3C|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal Sh3 Domain (E132c, E133g, R191g Mutant) From Oncogene Protein C-Crk Length = 60

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 41/56 (73%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 166
           E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ G IPVPYV+KY
Sbjct: 4   EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 59

>pdb|1M3C|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal Sh3 Domain (E132c, E133g, R191g Mutant) From Oncogene Protein C-Crk Length = 60

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 41/56 (73%)
Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 441
           E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ G IPVPYV+KY
Sbjct: 4   EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 59

>pdb|1M30|A Chain A, Solution Structure Of N-Terminal Sh3 Domain From Oncogene Protein C-Crk Length = 58

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 41/56 (73%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 166
           E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ G IPVPYV+KY
Sbjct: 2   EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 57

>pdb|1M30|A Chain A, Solution Structure Of N-Terminal Sh3 Domain From Oncogene Protein C-Crk Length = 58

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 41/56 (73%)
Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 441
           E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ G IPVPYV+KY
Sbjct: 2   EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 57

>pdb|1B07|A Chain A, Crk Sh3 Domain Complexed With Peptoid Inhibitor Length = 65

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 42/58 (72%)
Query: 109 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 166
           + E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ G IPVPYV+KY
Sbjct: 2   SAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 59

>pdb|1B07|A Chain A, Crk Sh3 Domain Complexed With Peptoid Inhibitor Length = 65

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 42/58 (72%)
Query: 384 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 441
           + E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ G IPVPYV+KY
Sbjct: 2   SAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 59

>pdb|1CKA|A Chain A, Structural Basis For The Specific Interaction Of Lysine- Containing Proline-Rich Peptides With The N-Terminal Sh3 Domain Of C-Crk Length = 57

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 41/56 (73%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 166
           E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ G IPVPYV+KY
Sbjct: 2   EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 57

>pdb|1CKA|A Chain A, Structural Basis For The Specific Interaction Of Lysine- Containing Proline-Rich Peptides With The N-Terminal Sh3 Domain Of C-Crk Length = 57

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 41/56 (73%)
Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 441
           E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ G IPVPYV+KY
Sbjct: 2   EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 57

>pdb|1M3B|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal Sh3 Domain (A134c, E135g, R191g Mutant) From Oncogene Protein C-Crk Length = 58

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/54 (59%), Positives = 40/54 (74%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 166
           V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ G IPVPYV+KY
Sbjct: 4   VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 57

>pdb|1M3B|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal Sh3 Domain (A134c, E135g, R191g Mutant) From Oncogene Protein C-Crk Length = 58

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/54 (59%), Positives = 40/54 (74%)
Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 441
           V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ G IPVPYV+KY
Sbjct: 4   VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 57

>pdb|1M3A|A Chain A, Solution Structure Of A Circular Form Of The Truncated N- Terminal Sh3 Domain From Oncogene Protein C-Crk Length = 57

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/54 (59%), Positives = 40/54 (74%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 166
           V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ G IPVPYV+KY
Sbjct: 3   VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 56

>pdb|1M3A|A Chain A, Solution Structure Of A Circular Form Of The Truncated N- Terminal Sh3 Domain From Oncogene Protein C-Crk Length = 57

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/54 (59%), Positives = 40/54 (74%)
Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 441
           V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ G IPVPYV+KY
Sbjct: 3   VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 56

>pdb|4F59|A Chain A, Triple Mutant Src Sh2 Domain Length = 112

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 9/99 (9%)
Query: 3  GTFDPHDRNSWYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVK--ENNK-- 57
          G  D      WYFG +TR+E++ +LL +E   G FLVR+S T+ G Y L V   +N K  
Sbjct: 1  GAMDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETVKGAYALSVSDFDNAKGL 60
Query: 58 -VSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
           V HY+I K+   +    Y      F+ L  L+A+Y  H
Sbjct: 61 NVKHYLIRKL---DSGGFYITSRTQFNSLQQLVAYYSKH 96

>pdb|4F59|A Chain A, Triple Mutant Src Sh2 Domain Length = 112

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 9/99 (9%)
Query: 278 GTFDPHDRNSWYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVK--ENNK-- 332
           G  D      WYFG +TR+E++ +LL +E   G FLVR+S T+ G Y L V   +N K  
Sbjct: 1   GAMDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETVKGAYALSVSDFDNAKGL 60
Query: 333 -VSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVH 370
            V HY+I K+   +    Y      F+ L  L+A+Y  H
Sbjct: 61  NVKHYLIRKL---DSGGFYITSRTQFNSLQQLVAYYSKH 96

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 79/183 (43%), Gaps = 38/183 (20%)
Query: 221 KTALKLEIGDIIKVTKTNINGQW---EGELNGKTGHFPFTHVEFIPTNETMPFHSSMKMT 277
           +T L  + G+ +++   N  G W        G+TG        +IP+N   P        
Sbjct: 17  ETDLSFKKGERLQIV-NNTEGDWWLAHSLTTGQTG--------YIPSNYVAPS------- 60
Query: 278 GTFDPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK--ENNK-- 332
              D      WYFG +TR+E++ +LL+ E   G FLVR+S T  G Y L V   +N K  
Sbjct: 61  ---DSIQAEEWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGL 117
Query: 333 -VSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVH-------YLDTSPLIKPATKT 384
            V HY I K+   +    Y      FS L  L+A+Y  H         +  P  KP T+ 
Sbjct: 118 NVKHYKIRKL---DSGGFYITSRTQFSSLQQLVAYYSKHADGLCHRLTNVCPTSKPQTQG 174
Query: 385 IEK 387
           + K
Sbjct: 175 LAK 177

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 389 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 438
           +A YD++     DL FKK + L +V+  E  WW A ++ +G+ G IP  YV
Sbjct: 7   VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 57

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 79/180 (43%), Gaps = 32/180 (17%)
Query: 221 KTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETMPFHSSMKMTGTF 280
           +T L  + G+ +++   N  G W    +  TG        +IP+N   P           
Sbjct: 99  ETDLSFKKGERLQIV-NNTEGDWWLAHSLSTGQ-----TGYIPSNYVAPS---------- 142
Query: 281 DPHDRNSWYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVK--ENNK---VS 334
           D      WYFG +TR+E++ +LL +E   G FLVR+S T  G Y L V   +N K   V 
Sbjct: 143 DSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVK 202
Query: 335 HYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYK------VHYLDT-SPLIKPATKTIEK 387
           HY I K+   +    Y      F+ L  L+A+Y        H L T  P  KP T+ + K
Sbjct: 203 HYKIRKL---DSGGFYITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPTSKPQTQGLAK 259

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 361 PSLLAFYKVHYLDTSP-LIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH 419
           P L   +      TSP    P    +   +A YD++     DL FKK + L +V+  E  
Sbjct: 60  PKLFGGFNSSDTVTSPQRAGPLAGGVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGD 119
Query: 420 WWTAQNIS-GEVGSIPVPYV 438
           WW A ++S G+ G IP  YV
Sbjct: 120 WWLAHSLSTGQTGYIPSNYV 139

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 79/180 (43%), Gaps = 32/180 (17%)
Query: 221 KTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETMPFHSSMKMTGTF 280
           +T L  + G+ +++   N  G W    +  TG        +IP+N   P           
Sbjct: 16  ETDLSFKKGERLQIV-NNTEGDWWLAHSLSTGQ-----TGYIPSNYVAPS---------- 59
Query: 281 DPHDRNSWYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVK--ENNK---VS 334
           D      WYFG +TR+E++ +LL +E   G FLVR+S T  G Y L V   +N K   V 
Sbjct: 60  DSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVK 119
Query: 335 HYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYK------VHYLDT-SPLIKPATKTIEK 387
           HY I K+   +    Y      F+ L  L+A+Y        H L T  P  KP T+ + K
Sbjct: 120 HYKIRKL---DSGGFYITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPTSKPQTQGLAK 176

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 389 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYV 438
           +A YD++     DL FKK + L +V+  E  WW A ++S G+ G IP  YV
Sbjct: 6   VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 79/180 (43%), Gaps = 32/180 (17%)
Query: 221 KTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETMPFHSSMKMTGTF 280
           +T L  + G+ +++   N  G W    +  TG        +IP+N   P           
Sbjct: 16  ETDLSFKKGERLQIV-NNTEGDWWLAHSLSTGQ-----TGYIPSNYVAPS---------- 59
Query: 281 DPHDRNSWYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVK--ENNK---VS 334
           D      WYFG +TR+E++ +LL +E   G FLVR+S T  G Y L V   +N K   V 
Sbjct: 60  DSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVK 119
Query: 335 HYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYK------VHYLDT-SPLIKPATKTIEK 387
           HY I K+   +    Y      F+ L  L+A+Y        H L T  P  KP T+ + K
Sbjct: 120 HYKIRKL---DSGGFYITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPTSKPQTQGLAK 176

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 389 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYV 438
           +A YD++     DL FKK + L +V+  E  WW A ++S G+ G IP  YV
Sbjct: 6   VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 79/180 (43%), Gaps = 32/180 (17%)
Query: 221 KTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETMPFHSSMKMTGTF 280
           +T L  + G+ +++   N  G W    +  TG        +IP+N   P           
Sbjct: 16  ETDLSFKKGERLQIV-NNTEGDWWLAHSLSTGQ-----TGYIPSNYVAPS---------- 59
Query: 281 DPHDRNSWYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVK--ENNK---VS 334
           D      WYFG +TR+E++ +LL +E   G FLVR+S T  G Y L V   +N K   V 
Sbjct: 60  DSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVK 119
Query: 335 HYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYK------VHYLDT-SPLIKPATKTIEK 387
           HY I K+   +    Y      F+ L  L+A+Y        H L T  P  KP T+ + K
Sbjct: 120 HYKIRKL---DSGGFYITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPTSKPQTQGLAK 176

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 389 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYV 438
           +A YD++     DL FKK + L +V+  E  WW A ++S G+ G IP  YV
Sbjct: 6   VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56

>pdb|1BKM|A Chain A, Cocrystal Structure Of D-Amino Acid Substituted Phosphopeptide Complex Length = 113

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 9/89 (10%)
Query: 13 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 66
          WYFG +TR+E++A+LL+ E   G FLVR+S T  G Y L V   +N K   V HY I K+
Sbjct: 6  WYFGKITRRESEALLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 65
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
             +    Y      FS L  L+A+Y  H
Sbjct: 66 ---DSGGFYITSRTQFSSLQQLVAYYSKH 91

>pdb|1BKM|A Chain A, Cocrystal Structure Of D-Amino Acid Substituted Phosphopeptide Complex Length = 113

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 9/89 (10%)
Query: 288 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 341
           WYFG +TR+E++A+LL+ E   G FLVR+S T  G Y L V   +N K   V HY I K+
Sbjct: 6   WYFGKITRRESEALLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 65
Query: 342 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 370
              +    Y      FS L  L+A+Y  H
Sbjct: 66  ---DSGGFYITSRTQFSSLQQLVAYYSKH 91

>pdb|1BKL|A Chain A, Self-Associated Apo Src Sh2 Domain Length = 113

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 9/89 (10%)
Query: 13 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 66
          WYFG +TR+E++++LL+ E   G FLVR+S T  G Y L V   +N K   V HY I K+
Sbjct: 6  WYFGKITRRESESLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 65
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
             +    Y      FS L  L+A+Y  H
Sbjct: 66 ---DSGGFYITSRTQFSSLQQLVAYYSKH 91

>pdb|1BKL|A Chain A, Self-Associated Apo Src Sh2 Domain Length = 113

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 9/89 (10%)
Query: 288 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 341
           WYFG +TR+E++++LL+ E   G FLVR+S T  G Y L V   +N K   V HY I K+
Sbjct: 6   WYFGKITRRESESLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 65
Query: 342 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 370
              +    Y      FS L  L+A+Y  H
Sbjct: 66  ---DSGGFYITSRTQFSSLQQLVAYYSKH 91

>pdb|1KC2|A Chain A, Structure Of The Triple (Lys(Beta)d3ala, Asp(Beta)c8ala, Aspcd2ala) Mutant Of The Src Sh2 Domain Bound To The Pqpyeeipi Peptide Length = 103

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 13 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 66
          WYFG +TR+E++ +LL+ E   G FLVR+S T  G Y L V    N K   V+HY I K+
Sbjct: 4  WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSAFANAKGLNVAHYKIRKL 63
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
             +    Y      FS L  L+A+Y  H
Sbjct: 64 ---DSGGFYITSRTQFSSLQQLVAYYSKH 89

>pdb|1KC2|A Chain A, Structure Of The Triple (Lys(Beta)d3ala, Asp(Beta)c8ala, Aspcd2ala) Mutant Of The Src Sh2 Domain Bound To The Pqpyeeipi Peptide Length = 103

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 288 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 341
           WYFG +TR+E++ +LL+ E   G FLVR+S T  G Y L V    N K   V+HY I K+
Sbjct: 4   WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSAFANAKGLNVAHYKIRKL 63
Query: 342 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 370
              +    Y      FS L  L+A+Y  H
Sbjct: 64  ---DSGGFYITSRTQFSSLQQLVAYYSKH 89

>pdb|1P13|A Chain A, Crystal Structure Of The Src Sh2 Domain Complexed With Peptide (Sdpyanfk) Length = 102

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 13 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 66
          WYFG +TR+E++ +LL+ E   G FLVR+S T  G Y L V   +N K   V HY I K+
Sbjct: 4  WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 63
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
             +    Y      FS L  L+A+Y  H
Sbjct: 64 ---DSGGFYITSRTQFSSLQQLVAYYSKH 89

>pdb|1P13|A Chain A, Crystal Structure Of The Src Sh2 Domain Complexed With Peptide (Sdpyanfk) Length = 102

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 288 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 341
           WYFG +TR+E++ +LL+ E   G FLVR+S T  G Y L V   +N K   V HY I K+
Sbjct: 4   WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 63
Query: 342 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 370
              +    Y      FS L  L+A+Y  H
Sbjct: 64  ---DSGGFYITSRTQFSSLQQLVAYYSKH 89

>pdb|1NZL|A Chain A, Crystal Structure Of Src Sh2 Domain Bound To Doubly Phosphorylated Peptide Pqpyepyipi Length = 103

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 13 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 66
          WYFG +TR+E++ +LL+ E   G FLVR+S T  G Y L V   +N K   V HY I K+
Sbjct: 4  WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 63
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
             +    Y      FS L  L+A+Y  H
Sbjct: 64 ---DSGGFYITSRTQFSSLQQLVAYYSKH 89

>pdb|1NZL|A Chain A, Crystal Structure Of Src Sh2 Domain Bound To Doubly Phosphorylated Peptide Pqpyepyipi Length = 103

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 288 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 341
           WYFG +TR+E++ +LL+ E   G FLVR+S T  G Y L V   +N K   V HY I K+
Sbjct: 4   WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 63
Query: 342 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 370
              +    Y      FS L  L+A+Y  H
Sbjct: 64  ---DSGGFYITSRTQFSSLQQLVAYYSKH 89

>pdb|1SHA|A Chain A, Crystal Structure Of The Phosphotyrosine Recognition Domain Sh2 Of V-Src Complexed With Tyrosine-Phosphorylated Peptides Length = 104

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 13 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 66
          WYFG +TR+E++ +LL+ E   G FLVR+S T  G Y L V   +N K   V HY I K+
Sbjct: 5  WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 64
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
             +    Y      FS L  L+A+Y  H
Sbjct: 65 ---DSGGFYITSRTQFSSLQQLVAYYSKH 90

>pdb|1SHA|A Chain A, Crystal Structure Of The Phosphotyrosine Recognition Domain Sh2 Of V-Src Complexed With Tyrosine-Phosphorylated Peptides Length = 104

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 288 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 341
           WYFG +TR+E++ +LL+ E   G FLVR+S T  G Y L V   +N K   V HY I K+
Sbjct: 5   WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 64
Query: 342 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 370
              +    Y      FS L  L+A+Y  H
Sbjct: 65  ---DSGGFYITSRTQFSSLQQLVAYYSKH 90

>pdb|1SKJ|A Chain A, Cocrystal Structure Of Urea-Substituted Phosphopeptide Complex Length = 113

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 13 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 66
          WYFG +TR+E++ +LL+ E   G FLVR+S T  G Y L V   +N K   V HY I K+
Sbjct: 6  WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 65
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
             +    Y      FS L  L+A+Y  H
Sbjct: 66 ---DSGGFYITSRTQFSSLQQLVAYYSKH 91

>pdb|1SKJ|A Chain A, Cocrystal Structure Of Urea-Substituted Phosphopeptide Complex Length = 113

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 288 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 341
           WYFG +TR+E++ +LL+ E   G FLVR+S T  G Y L V   +N K   V HY I K+
Sbjct: 6   WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 65
Query: 342 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 370
              +    Y      FS L  L+A+Y  H
Sbjct: 66  ---DSGGFYITSRTQFSSLQQLVAYYSKH 91

>pdb|1IS0|A Chain A, Crystal Structure Of A Complex Of The Src Sh2 Domain With Conformationally Constrained Peptide Inhibitor Length = 106

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 13 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 66
          WYFG +TR+E++ +LL+ E   G FLVR+S T  G Y L V   +N K   V HY I K+
Sbjct: 5  WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 64
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
             +    Y      FS L  L+A+Y  H
Sbjct: 65 ---DSGGFYITSRTQFSSLQQLVAYYSKH 90

>pdb|1IS0|A Chain A, Crystal Structure Of A Complex Of The Src Sh2 Domain With Conformationally Constrained Peptide Inhibitor Length = 106

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 288 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 341
           WYFG +TR+E++ +LL+ E   G FLVR+S T  G Y L V   +N K   V HY I K+
Sbjct: 5   WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 64
Query: 342 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 370
              +    Y      FS L  L+A+Y  H
Sbjct: 65  ---DSGGFYITSRTQFSSLQQLVAYYSKH 90

>pdb|1F1W|A Chain A, Src Sh2 Thref1trp Mutant Complexed With The Phosphopeptide S(Ptr)vnvqn Length = 104

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 13 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 66
          WYFG +TR+E++ +LL+ E   G FLVR+S T  G Y L V   +N K   V HY I K+
Sbjct: 5  WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 64
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
             +    Y      FS L  L+A+Y  H
Sbjct: 65 ---DSGGFYIWSRTQFSSLQQLVAYYSKH 90

>pdb|1F1W|A Chain A, Src Sh2 Thref1trp Mutant Complexed With The Phosphopeptide S(Ptr)vnvqn Length = 104

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 288 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 341
           WYFG +TR+E++ +LL+ E   G FLVR+S T  G Y L V   +N K   V HY I K+
Sbjct: 5   WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 64
Query: 342 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 370
              +    Y      FS L  L+A+Y  H
Sbjct: 65  ---DSGGFYIWSRTQFSSLQQLVAYYSKH 90

>pdb|1SHD|A Chain A, Peptide Inhibitors Of Src Sh3-Sh2-Phosphoprotein Interactions Length = 107

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 13 WYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 66
          WYFG +TR+E++ +LL +E   G FLVR+S T  G Y L V   +N K   V HY I K+
Sbjct: 9  WYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 68
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
             +    Y      F+ L  L+A+Y  H
Sbjct: 69 ---DSGGFYITSRTQFNSLQQLVAYYSKH 94

>pdb|1SHD|A Chain A, Peptide Inhibitors Of Src Sh3-Sh2-Phosphoprotein Interactions Length = 107

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 288 WYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 341
           WYFG +TR+E++ +LL +E   G FLVR+S T  G Y L V   +N K   V HY I K+
Sbjct: 9   WYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 68
Query: 342 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 370
              +    Y      F+ L  L+A+Y  H
Sbjct: 69  ---DSGGFYITSRTQFNSLQQLVAYYSKH 94

>pdb|1O41|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78300. Length = 108

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 13 WYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 66
          WYFG +TR+E++ +LL +E   G FLVR+S T  G Y L V   +N K   V HY I K+
Sbjct: 7  WYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 66
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
             +    Y      F+ L  L+A+Y  H
Sbjct: 67 ---DSGGFYITSRTQFNSLQQLVAYYSKH 92

>pdb|1O41|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78300. Length = 108

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 288 WYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 341
           WYFG +TR+E++ +LL +E   G FLVR+S T  G Y L V   +N K   V HY I K+
Sbjct: 7   WYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 66
Query: 342 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 370
              +    Y      F+ L  L+A+Y  H
Sbjct: 67  ---DSGGFYITSRTQFNSLQQLVAYYSKH 92

>pdb|1A1A|A Chain A, C-Src (Sh2 Domain With C188a Mutation) Complexed With Ace-Formyl Phosphotyr-Glu-(N,N-Dipentyl Amine) Length = 107

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 13 WYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 66
          WYFG +TR+E++ +LL +E   G FLVR+S T  G Y L V   +N K   V HY I K+
Sbjct: 9  WYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYSLSVSDFDNAKGLNVKHYKIRKL 68
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
             +    Y      F+ L  L+A+Y  H
Sbjct: 69 ---DSGGFYITSRTQFNSLQQLVAYYSKH 94

>pdb|1A1A|A Chain A, C-Src (Sh2 Domain With C188a Mutation) Complexed With Ace-Formyl Phosphotyr-Glu-(N,N-Dipentyl Amine) Length = 107

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 288 WYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 341
           WYFG +TR+E++ +LL +E   G FLVR+S T  G Y L V   +N K   V HY I K+
Sbjct: 9   WYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYSLSVSDFDNAKGLNVKHYKIRKL 68
Query: 342 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 370
              +    Y      F+ L  L+A+Y  H
Sbjct: 69  ---DSGGFYITSRTQFNSLQQLVAYYSKH 94

>pdb|1O4C|A Chain A, Crystal Structure Of Sh2 In Complex With Phosphate. Length = 108

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 13 WYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 66
          WYFG +TR+E++ +LL +E   G FLVR+S T  G Y L V   +N K   V HY I K+
Sbjct: 7  WYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYXLSVSDFDNAKGLNVKHYKIRKL 66
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
             +    Y      F+ L  L+A+Y  H
Sbjct: 67 ---DSGGFYITSRTQFNSLQQLVAYYSKH 92

>pdb|1O4C|A Chain A, Crystal Structure Of Sh2 In Complex With Phosphate. Length = 108

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 288 WYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 341
           WYFG +TR+E++ +LL +E   G FLVR+S T  G Y L V   +N K   V HY I K+
Sbjct: 7   WYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYXLSVSDFDNAKGLNVKHYKIRKL 66
Query: 342 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 370
              +    Y      F+ L  L+A+Y  H
Sbjct: 67  ---DSGGFYITSRTQFNSLQQLVAYYSKH 92

>pdb|2KK6|A Chain A, Solution Structure Of Sh2 Domain Of Proto-Oncogene Tyrosine- Protein Kinase Fer From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr3461d Length = 116

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 7  PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI 66
          P     WY G + R EAQ +L   K  G FLVR+S+   G YVL V  + +  H+II  +
Sbjct: 13 PLAEQDWYHGAIPRIEAQELL---KKQGDFLVRESHGKPGEYVLSVYSDGQRRHFIIQYV 69
Query: 67 TNTEQQTCYKIGDKTFSDLPSLL 89
           N      Y+     FS++P L+
Sbjct: 70 DN-----MYRFEGTGFSNIPQLI 87

>pdb|2KK6|A Chain A, Solution Structure Of Sh2 Domain Of Proto-Oncogene Tyrosine- Protein Kinase Fer From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr3461d Length = 116

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 282 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI 341
           P     WY G + R EAQ +L   K  G FLVR+S+   G YVL V  + +  H+II  +
Sbjct: 13  PLAEQDWYHGAIPRIEAQELL---KKQGDFLVRESHGKPGEYVLSVYSDGQRRHFIIQYV 69
Query: 342 TNTEQQTCYKIGDKTFSDLPSLL 364
            N      Y+     FS++P L+
Sbjct: 70  DN-----MYRFEGTGFSNIPQLI 87

>pdb|2ABL|A Chain A, Sh3-Sh2 Domain Fragment Of Human Bcr-Abl Tyrosine Kinase Length = 163

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 21/141 (14%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETMPFHSSMKMTGTFDPH 283
           L +  G+ ++V   N NG+W  E   K G        ++P+N   P +S           
Sbjct: 25  LSITKGEKLRVLGYNHNGEW-CEAQTKNGQ------GWVPSNYITPVNSL---------- 67
Query: 284 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 343
           +++SWY G ++R  A+  LLS   NG+FLVR+S +  G   + ++   +V HY IN  ++
Sbjct: 68  EKHSWYHGPVSRNAAE-YLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 126
Query: 344 TEQQTCYKIGDKTFSDLPSLL 364
            +    Y   +  F+ L  L+
Sbjct: 127 GK---LYVSSESRFNTLAELV 144

>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 21/141 (14%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETMPFHSSMKMTGTFDPH 283
           L +  G+ ++V   N NG+W  E   K G        ++P+N   P +S           
Sbjct: 99  LSITKGEKLRVLGYNHNGEW-CEAQTKNGQ------GWVPSNYITPVNSL---------- 141
Query: 284 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 343
           +++SWY G ++R  A+  LLS   NG+FLVR+S +  G   + ++   +V HY IN  ++
Sbjct: 142 EKHSWYHGPVSRNAAE-YLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 200
Query: 344 TEQQTCYKIGDKTFSDLPSLL 364
            +    Y   +  F+ L  L+
Sbjct: 201 GK---LYVSSESRFNTLAELV 218

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 21/141 (14%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETMPFHSSMKMTGTFDPH 283
           L +  G+ ++V   N NG+W  E   K G        ++P+N   P +S           
Sbjct: 60  LSITKGEKLRVLGYNHNGEW-CEAQTKNGQ------GWVPSNYITPVNSL---------- 102
Query: 284 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 343
           +++SWY G ++R  A+  LLS   NG+FLVR+S +  G   + ++   +V HY IN  ++
Sbjct: 103 EKHSWYHGPVSRNAAE-YLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 161
Query: 344 TEQQTCYKIGDKTFSDLPSLL 364
            +    Y   +  F+ L  L+
Sbjct: 162 GK---LYVSSESRFNTLAELV 179

>pdb|1JEG|A Chain A, Solution Structure Of The Sh3 Domain From C-Terminal Src Kinase Complexed With A Peptide From The Tyrosine Phosphatase Pep Length = 83

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 103 IKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVS-KDEEHWWTAQNISGEVGSIPVP 161
           I+ A  +  + IAKY+F G    DLPF K D+L +V+   + +W+ A+N  G  G IP  
Sbjct: 4   IQAAWPSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPAN 63
Query: 162 YVQK 165
           YVQK
Sbjct: 64  YVQK 67

>pdb|1JEG|A Chain A, Solution Structure Of The Sh3 Domain From C-Terminal Src Kinase Complexed With A Peptide From The Tyrosine Phosphatase Pep Length = 83

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 378 IKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVS-KDEEHWWTAQNISGEVGSIPVP 436
           I+ A  +  + IAKY+F G    DLPF K D+L +V+   + +W+ A+N  G  G IP  
Sbjct: 4   IQAAWPSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPAN 63
Query: 437 YVQK 440
           YVQK
Sbjct: 64  YVQK 67

>pdb|1S1N|A Chain A, Sh3 Domain Of Human Nephrocystin Length = 68

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 35/60 (58%)
Query: 109 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
           T E+ IA  DF      DL FKK +IL+V+ K  + WW A++  G  G +P  Y++ YSE
Sbjct: 9   TGEEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLEPYSE 68

>pdb|1S1N|A Chain A, Sh3 Domain Of Human Nephrocystin Length = 68

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 35/60 (58%)
Query: 384 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 443
           T E+ IA  DF      DL FKK +IL+V+ K  + WW A++  G  G +P  Y++ YSE
Sbjct: 9   TGEEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLEPYSE 68

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEE-HWWTAQNISGEVGSIPVPYVQK 165
           + IAKY+F G    DLPF K D+L +V+  ++ +W+ A+N  G  G IP  YVQK
Sbjct: 13  ECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQK 67

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEE-HWWTAQNISGEVGSIPVPYVQK 440
           + IAKY+F G    DLPF K D+L +V+  ++ +W+ A+N  G  G IP  YVQK
Sbjct: 13  ECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQK 67

>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin Length = 79

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 31/52 (59%)
Query: 499 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETNGNG 550
           L LE GDI+ + +    G W G LNGK GHFP  +VE +P+N  +  T  +G
Sbjct: 24  LNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEELPSNAGNTATKASG 75

>pdb|1CSK|A Chain A, The Crystal Structure Of Human Csksh3: Structural Diversity Near The Rt-Src And N-Src Loop Length = 71

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVS-KDEEHWWTAQNISGEVGSIPVPYVQK 165
           IAKY+F G    DLPF K D+L +V+   + +W+ A+N  G  G IP  YVQK
Sbjct: 15  IAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQK 67

>pdb|1CSK|A Chain A, The Crystal Structure Of Human Csksh3: Structural Diversity Near The Rt-Src And N-Src Loop Length = 71

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 389 IAKYDFDGNDPDDLPFKKNDILIVVS-KDEEHWWTAQNISGEVGSIPVPYVQK 440
           IAKY+F G    DLPF K D+L +V+   + +W+ A+N  G  G IP  YVQK
Sbjct: 15  IAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQK 67

>pdb|2CI9|A Chain A, Nck1 Sh2-Domain In Complex With A Dodecaphosphopeptide From Epec Protein Tir Length = 102

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
          WY+G +TR +A+  L      G FL+RDS +   ++ + +K   K  H+ +       ++
Sbjct: 7  WYYGKVTRHQAEMALNERGHEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQL-----KE 61
Query: 73 TCYKIGDKTFSDLPSLLAFYK 93
          T Y IG + FS +  L+  YK
Sbjct: 62 TVYCIGQRKFSTMEELVEHYK 82

>pdb|2CI9|A Chain A, Nck1 Sh2-Domain In Complex With A Dodecaphosphopeptide From Epec Protein Tir Length = 102

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 347
           WY+G +TR +A+  L      G FL+RDS +   ++ + +K   K  H+ +       ++
Sbjct: 7   WYYGKVTRHQAEMALNERGHEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQL-----KE 61
Query: 348 TCYKIGDKTFSDLPSLLAFYK 368
           T Y IG + FS +  L+  YK
Sbjct: 62  TVYCIGQRKFSTMEELVEHYK 82

>pdb|2CI8|A Chain A, Sh2 Domain Of Human Nck1 Adaptor Protein - Uncomplexed Length = 99

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
          WY+G +TR +A+  L      G FL+RDS +   ++ + +K   K  H+ +       ++
Sbjct: 3  WYYGKVTRHQAEMALNERGHEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQL-----KE 57
Query: 73 TCYKIGDKTFSDLPSLLAFYK 93
          T Y IG + FS +  L+  YK
Sbjct: 58 TVYCIGQRKFSTMEELVEHYK 78

>pdb|2CI8|A Chain A, Sh2 Domain Of Human Nck1 Adaptor Protein - Uncomplexed Length = 99

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 347
           WY+G +TR +A+  L      G FL+RDS +   ++ + +K   K  H+ +       ++
Sbjct: 3   WYYGKVTRHQAEMALNERGHEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQL-----KE 57
Query: 348 TCYKIGDKTFSDLPSLLAFYK 368
           T Y IG + FS +  L+  YK
Sbjct: 58  TVYCIGQRKFSTMEELVEHYK 78

>pdb|1A81|A Chain A, Crystal Structure Of The Tandem Sh2 Domain Of The Syk Kinase Bound To A Dually Tyrosine-Phosphorylated Itam Length = 254

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 6/61 (9%)
Query: 8   HDRNSWYFGMMTRQEA-QAILLSEKDNGAFLVR--DSNTILGNYVLCVKENNKVSHYIIN 64
           H++  W+ G ++R+E+ Q +L+  K NG FL+R  D+N   G+Y LC+    KV HY I+
Sbjct: 155 HEKMPWFHGKISREESEQIVLIGSKTNGKFLIRARDNN---GSYALCLLHEGKVLHYRID 211
Query: 65  K 65
           K
Sbjct: 212 K 212

>pdb|1A81|A Chain A, Crystal Structure Of The Tandem Sh2 Domain Of The Syk Kinase Bound To A Dually Tyrosine-Phosphorylated Itam Length = 254

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 6/61 (9%)
Query: 283 HDRNSWYFGMMTRQEA-QAILLSEKDNGAFLVR--DSNTILGNYVLCVKENNKVSHYIIN 339
           H++  W+ G ++R+E+ Q +L+  K NG FL+R  D+N   G+Y LC+    KV HY I+
Sbjct: 155 HEKMPWFHGKISREESEQIVLIGSKTNGKFLIRARDNN---GSYALCLLHEGKVLHYRID 211
Query: 340 K 340
           K
Sbjct: 212 K 212

>pdb|1CSY|A Chain A, Syk Tyrosine Kinase C-Terminal Sh2 Domain Complexed With A Phosphopeptidefrom The Gamma Chain Of The High Affinity Immunoglobin G Receptor, Nmr Length = 112

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 6/65 (9%)
Query: 4  TFDPHDRNSWYFGMMTRQEA-QAILLSEKDNGAFLVR--DSNTILGNYVLCVKENNKVSH 60
          +   H++  W+ G ++R+E+ Q +L+  K NG FL+R  D+N   G+Y LC+    KV H
Sbjct: 6  SVGSHEKMPWFHGKISREESEQIVLIGSKTNGKFLIRARDNN---GSYALCLLHEGKVLH 62
Query: 61 YIINK 65
          Y I+K
Sbjct: 63 YRIDK 67

>pdb|1CSY|A Chain A, Syk Tyrosine Kinase C-Terminal Sh2 Domain Complexed With A Phosphopeptidefrom The Gamma Chain Of The High Affinity Immunoglobin G Receptor, Nmr Length = 112

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 6/65 (9%)
Query: 279 TFDPHDRNSWYFGMMTRQEA-QAILLSEKDNGAFLVR--DSNTILGNYVLCVKENNKVSH 335
           +   H++  W+ G ++R+E+ Q +L+  K NG FL+R  D+N   G+Y LC+    KV H
Sbjct: 6   SVGSHEKMPWFHGKISREESEQIVLIGSKTNGKFLIRARDNN---GSYALCLLHEGKVLH 62
Query: 336 YIINK 340
           Y I+K
Sbjct: 63  YRIDK 67

>pdb|1FYR|A Chain A, Dimer Formation Through Domain Swapping In The Crystal Structure Of The Grb2-Sh2 Ac-Pyvnv Complex Length = 114

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
          W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+ +
Sbjct: 13 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 63

>pdb|1FYR|A Chain A, Dimer Formation Through Domain Swapping In The Crystal Structure Of The Grb2-Sh2 Ac-Pyvnv Complex Length = 114

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 338
           W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+ +
Sbjct: 13  WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 63

>pdb|1GHU|A Chain A, Nmr Solution Structure Of Growth Factor Receptor-Bound Protein 2 (Grb2) Sh2 Domain, 24 Structures Length = 107

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 34/50 (68%)
Query: 12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 61
          SW+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+
Sbjct: 2  SWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHF 51

>pdb|1GHU|A Chain A, Nmr Solution Structure Of Growth Factor Receptor-Bound Protein 2 (Grb2) Sh2 Domain, 24 Structures Length = 107

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 34/50 (68%)
Query: 287 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 336
           SW+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+
Sbjct: 2   SWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHF 51

>pdb|4FL3|A Chain A, Structural And Biophysical Characterization Of The Syk Activation Switch Length = 635

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 2  TGTFDPHDRNSWYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
          +G  D  +   ++FG +TR+EA+  L+     +G +L+R S   LG + L V    K  H
Sbjct: 4  SGMADSANHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHH 63
Query: 61 YIINKITN 68
          Y I +  N
Sbjct: 64 YTIERELN 71

>pdb|4FL3|A Chain A, Structural And Biophysical Characterization Of The Syk Activation Switch Length = 635

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 274 MKMTGTFDPHDRNSWYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVKENNK 332
           M  +G  D  +   ++FG +TR+EA+  L+     +G +L+R S   LG + L V    K
Sbjct: 1   MASSGMADSANHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRK 60
Query: 333 VSHYIINKITN 343
             HY I +  N
Sbjct: 61  AHHYTIERELN 71

>pdb|4FL2|A Chain A, Structural And Biophysical Characterization Of The Syk Activation Switch Length = 636

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 2  TGTFDPHDRNSWYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
          +G  D  +   ++FG +TR+EA+  L+     +G +L+R S   LG + L V    K  H
Sbjct: 5  SGMADSANHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHH 64
Query: 61 YIINKITN 68
          Y I +  N
Sbjct: 65 YTIERELN 72

>pdb|4FL2|A Chain A, Structural And Biophysical Characterization Of The Syk Activation Switch Length = 636

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 273 SMKMTGTFDPHDRNSWYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVKENN 331
            M  +G  D  +   ++FG +TR+EA+  L+     +G +L+R S   LG + L V    
Sbjct: 1   GMASSGMADSANHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGR 60
Query: 332 KVSHYIINKITN 343
           K  HY I +  N
Sbjct: 61  KAHHYTIERELN 72

>pdb|2DLY|A Chain A, Solution Structure Of The Sh2 Domain Of Murine Fyn-Related Kinase Length = 121

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 2  TGTFDPHDRN----SWYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVKENN 56
          +G+    DR+     W+FG + R +A+  LL SE   GAFL+R+S +  G++ L V +  
Sbjct: 3  SGSSGAEDRSLQAEPWFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLDEG 62
Query: 57 KVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFY 92
           V HY I ++   ++   +    K FS L   + +Y
Sbjct: 63 VVKHYRIRRL---DEGGFFLTRRKVFSTLNEFVNYY 95

>pdb|2DLY|A Chain A, Solution Structure Of The Sh2 Domain Of Murine Fyn-Related Kinase Length = 121

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 277 TGTFDPHDRN----SWYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVKENN 331
           +G+    DR+     W+FG + R +A+  LL SE   GAFL+R+S +  G++ L V +  
Sbjct: 3   SGSSGAEDRSLQAEPWFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLDEG 62
Query: 332 KVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFY 367
            V HY I ++   ++   +    K FS L   + +Y
Sbjct: 63  VVKHYRIRRL---DEGGFFLTRRKVFSTLNEFVNYY 95

>pdb|1JYQ|A Chain A, Xray Structure Of Grb2 Sh2 Domain Complexed With A Highly Affine Phospho Peptide Length = 96

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 34/50 (68%)
Query: 12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 61
          +W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+
Sbjct: 4  AWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHF 53

>pdb|1JYQ|A Chain A, Xray Structure Of Grb2 Sh2 Domain Complexed With A Highly Affine Phospho Peptide Length = 96

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 34/50 (68%)
Query: 287 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 336
           +W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+
Sbjct: 4   AWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHF 53

>pdb|3EAZ|A Chain A, Crystal Structure Of Sh2 Domain Of Human Csk (Carboxyl- Terminal Src Kinase), C122s Mutant Length = 106

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
          W+ G +TR++A+  LL   + G FLVR+S    G+Y LCV  + KV HY I
Sbjct: 10 WFHGKITREQAER-LLYPPETGLFLVRESTNYPGDYTLCVSSDGKVEHYRI 59

>pdb|3EAZ|A Chain A, Crystal Structure Of Sh2 Domain Of Human Csk (Carboxyl- Terminal Src Kinase), C122s Mutant Length = 106

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 338
           W+ G +TR++A+  LL   + G FLVR+S    G+Y LCV  + KV HY I
Sbjct: 10  WFHGKITREQAER-LLYPPETGLFLVRESTNYPGDYTLCVSSDGKVEHYRI 59

>pdb|2LMJ|A Chain A, Itk-Sh3 Length = 66

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
           VIA YD+  NDP +L  ++N+   ++   E HWW  Q+ +G  G +P  Y+ + S
Sbjct: 11  VIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVEKS 65

>pdb|2LMJ|A Chain A, Itk-Sh3 Length = 66

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 442
           VIA YD+  NDP +L  ++N+   ++   E HWW  Q+ +G  G +P  Y+ + S
Sbjct: 11  VIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVEKS 65

>pdb|1CJ1|A Chain A, Growth Factor Receptor Binding Protein Sh2 Domain (Human) Complexed With A Phosphotyrosyl Derivative Length = 96

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 7  PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 61
          PH    W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+
Sbjct: 1  PH---PWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHF 52

>pdb|1CJ1|A Chain A, Growth Factor Receptor Binding Protein Sh2 Domain (Human) Complexed With A Phosphotyrosyl Derivative Length = 96

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 282 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 336
           PH    W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+
Sbjct: 1   PH---PWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHF 52

>pdb|1TZE|E Chain E, Signal Transduction Adaptor Growth Factor, Grb2 Sh2 Domain Complexed With Phosphotyrosyl Heptapeptide Lys-Pro-Phe-Ptyr-Val-Asn-Val-Nh2 (Kfppyvnc-Nh2) Length = 98

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 7  PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 61
          PH    W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+
Sbjct: 3  PH---PWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHF 54

>pdb|1TZE|E Chain E, Signal Transduction Adaptor Growth Factor, Grb2 Sh2 Domain Complexed With Phosphotyrosyl Heptapeptide Lys-Pro-Phe-Ptyr-Val-Asn-Val-Nh2 (Kfppyvnc-Nh2) Length = 98

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 282 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 336
           PH    W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+
Sbjct: 3   PH---PWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHF 54

>pdb|2AOA|A Chain A, Crystal Structures Of A High-affinity Macrocyclic Peptide Mimetic In Complex With The Grb2 Sh2 Domain Length = 99

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 7  PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 61
          PH    W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+
Sbjct: 3  PH---PWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHF 54

>pdb|2AOA|A Chain A, Crystal Structures Of A High-affinity Macrocyclic Peptide Mimetic In Complex With The Grb2 Sh2 Domain Length = 99

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 282 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 336
           PH    W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+
Sbjct: 3   PH---PWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHF 54

>pdb|3MXC|A Chain A, Structures Of Grb2-Sh2 Domain And Aicd Peptide Complexes Reveal A Conformational Switch And Their Functional Implications. Length = 101

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 7  PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 61
          PH    W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+
Sbjct: 6  PH---PWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHF 57

>pdb|3MXC|A Chain A, Structures Of Grb2-Sh2 Domain And Aicd Peptide Complexes Reveal A Conformational Switch And Their Functional Implications. Length = 101

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 282 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 336
           PH    W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+
Sbjct: 6   PH---PWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHF 57

>pdb|2YUQ|A Chain A, Solution Structure Of The Sh3 Domain Of Human Tyrosine- Protein Kinase ItkTSK Length = 85

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 101 PLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPV 160
           PL +P       VIA YD+  NDP +L  ++N+   ++   E HWW  Q+ +G  G +P 
Sbjct: 13  PLWEPEETV---VIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPS 69
Query: 161 PYVQKYS 167
            Y+ + S
Sbjct: 70  SYLVEKS 76

>pdb|2YUQ|A Chain A, Solution Structure Of The Sh3 Domain Of Human Tyrosine- Protein Kinase ItkTSK Length = 85

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 376 PLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPV 435
           PL +P       VIA YD+  NDP +L  ++N+   ++   E HWW  Q+ +G  G +P 
Sbjct: 13  PLWEPEETV---VIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPS 69
Query: 436 PYVQKYS 442
            Y+ + S
Sbjct: 70  SYLVEKS 76

>pdb|1ZFP|E Chain E, Growth Factor Receptor Binding Protein Sh2 Domain Complexed With A Phosphotyrosyl Pentapeptide Length = 98

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 7  PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 61
          PH    W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+
Sbjct: 2  PH---PWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHF 53

>pdb|1ZFP|E Chain E, Growth Factor Receptor Binding Protein Sh2 Domain Complexed With A Phosphotyrosyl Pentapeptide Length = 98

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 282 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 336
           PH    W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+
Sbjct: 2   PH---PWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHF 53

>pdb|1FHS|A Chain A, The Three-Dimensional Solution Structure Of The Src Homology Domain-2 Of The Growth Factor Receptor Bound Protein-2, Nmr, 18 Structures Length = 112

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 7  PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 61
          PH    W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+
Sbjct: 6  PH---PWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHF 57

>pdb|1FHS|A Chain A, The Three-Dimensional Solution Structure Of The Src Homology Domain-2 Of The Growth Factor Receptor Bound Protein-2, Nmr, 18 Structures Length = 112

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 282 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 336
           PH    W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+
Sbjct: 6   PH---PWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHF 57

>pdb|3EAC|A Chain A, Crystal Structure Of Sh2 Domain Of Human Csk (Carboxyl- Terminal Src Kinase), Oxidized Form Length = 106

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
          W+ G +TR++A+  LL   + G FLVR+S    G+Y LCV  + KV HY I
Sbjct: 10 WFHGKITREQAER-LLYPPETGLFLVRESTNYPGDYTLCVSCDGKVEHYRI 59

>pdb|3EAC|A Chain A, Crystal Structure Of Sh2 Domain Of Human Csk (Carboxyl- Terminal Src Kinase), Oxidized Form Length = 106

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 338
           W+ G +TR++A+  LL   + G FLVR+S    G+Y LCV  + KV HY I
Sbjct: 10  WFHGKITREQAER-LLYPPETGLFLVRESTNYPGDYTLCVSCDGKVEHYRI 59

>pdb|3N84|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A 23-Membered Macrocyclic Ligand Having The Sequence Pyvnvp Length = 112

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 7  PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 61
          PH    W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+
Sbjct: 6  PH---PWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHF 57

>pdb|3N84|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A 23-Membered Macrocyclic Ligand Having The Sequence Pyvnvp Length = 112

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 282 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 336
           PH    W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+
Sbjct: 6   PH---PWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHF 57

>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of Intersectin 2 (Kiaa1256) Length = 98

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           PA   + +VIA YD+  N+ D+L F K  ++ V++KD+  WW  + I+G  G  P  YV+
Sbjct: 29  PAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGE-INGVTGLFPSNYVK 87

>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of Intersectin 2 (Kiaa1256) Length = 98

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 380 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
           PA   + +VIA YD+  N+ D+L F K  ++ V++KD+  WW  + I+G  G  P  YV+
Sbjct: 29  PAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGE-INGVTGLFPSNYVK 87

>pdb|3OVE|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A Pyxn- Derived Tripeptide Length = 117

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 7  PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 61
          PH    W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+
Sbjct: 5  PH---PWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHF 56

>pdb|3OVE|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A Pyxn- Derived Tripeptide Length = 117

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 282 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 336
           PH    W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+
Sbjct: 5   PH---PWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHF 56

>pdb|3IMD|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A Flexible Ac-Py-Q-N-Nh2 Tripeptide Mimic Length = 117

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 7  PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 61
          PH    W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+
Sbjct: 5  PH---PWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHF 56

>pdb|3IMD|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A Flexible Ac-Py-Q-N-Nh2 Tripeptide Mimic Length = 117

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 282 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 336
           PH    W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+
Sbjct: 5   PH---PWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHF 56

>pdb|1BMB|A Chain A, Grb2-Sh2 Domain In Complex With KpfyVnvef (Pkf270-974) Length = 123

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 7  PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 61
          PH    W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+
Sbjct: 12 PH---PWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHF 63

>pdb|1BMB|A Chain A, Grb2-Sh2 Domain In Complex With KpfyVnvef (Pkf270-974) Length = 123

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 282 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 336
           PH    W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+
Sbjct: 12  PH---PWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHF 63

>pdb|2H46|E Chain E, Native Domain-Swapped Dimer Crystal Structure Of The Grb2 Sh2 Domain Length = 116

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 7  PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 61
          PH    W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+
Sbjct: 5  PH---PWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHF 56

>pdb|2H46|E Chain E, Native Domain-Swapped Dimer Crystal Structure Of The Grb2 Sh2 Domain Length = 116

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 282 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 336
           PH    W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+
Sbjct: 5   PH---PWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHF 56

>pdb|4EY0|A Chain A, Structure Of Tandem Sh2 Domains From Plcgamma1 Length = 246

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 6   DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
           + H+   WY   +TR +A+ +L+    +GAFLVR  N    +Y +  +   K+ H  + +
Sbjct: 117 NAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEP-NSYAISFRAEGKIKHCRVQQ 175
Query: 66  ITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYL 97
               E QT   +G+  F  L  L+++Y+ H L
Sbjct: 176 ----EGQTVM-LGNSEFDSLVDLISYYEKHPL 202

>pdb|4EY0|A Chain A, Structure Of Tandem Sh2 Domains From Plcgamma1 Length = 246

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 281 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 340
           + H+   WY   +TR +A+ +L+    +GAFLVR  N    +Y +  +   K+ H  + +
Sbjct: 117 NAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEP-NSYAISFRAEGKIKHCRVQQ 175
Query: 341 ITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYL 372
               E QT   +G+  F  L  L+++Y+ H L
Sbjct: 176 ----EGQTVM-LGNSEFDSLVDLISYYEKHPL 202

>pdb|3GQI|B Chain B, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 226

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 6   DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
           + H+   WY   +TR +A+ +L+    +GAFLVR  N    +Y +  +   K+ H  + +
Sbjct: 117 NAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEP-NSYAISFRAEGKIKHCRVQQ 175
Query: 66  ITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYL 97
               E QT   +G+  F  L  L+++Y+ H L
Sbjct: 176 ----EGQTVM-LGNSEFDSLVDLISYYEKHPL 202

>pdb|3GQI|B Chain B, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 226

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 281 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 340
           + H+   WY   +TR +A+ +L+    +GAFLVR  N    +Y +  +   K+ H  + +
Sbjct: 117 NAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEP-NSYAISFRAEGKIKHCRVQQ 175
Query: 341 ITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYL 372
               E QT   +G+  F  L  L+++Y+ H L
Sbjct: 176 ----EGQTVM-LGNSEFDSLVDLISYYEKHPL 202

>pdb|1X0N|A Chain A, Nmr Structure Of Growth Factor Receptor Binding Protein Sh2 Domain Complexed With The Inhibitor Length = 104

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 61
          W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+
Sbjct: 5  WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHF 53

>pdb|1X0N|A Chain A, Nmr Structure Of Growth Factor Receptor Binding Protein Sh2 Domain Complexed With The Inhibitor Length = 104

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 336
           W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+
Sbjct: 5   WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHF 53

>pdb|4FBN|A Chain A, Insights Into Structural Integration Of The Plcgamma Regulatory Region And Mechanism Of Autoinhibition And Activation Based On Key Roles Of Sh2 Domains Length = 246

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 6   DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
           + H+   WY   +TR +A+ +L+    +GAFLVR  N    +Y +  +   K+ H  + +
Sbjct: 117 NAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEP-NSYAISFRAEGKIKHCRVQQ 175
Query: 66  ITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYL 97
               E QT   +G+  F  L  L+++Y+ H L
Sbjct: 176 ----EGQTV-MLGNSEFDSLVDLISYYEKHPL 202

>pdb|4FBN|A Chain A, Insights Into Structural Integration Of The Plcgamma Regulatory Region And Mechanism Of Autoinhibition And Activation Based On Key Roles Of Sh2 Domains Length = 246

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 281 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 340
           + H+   WY   +TR +A+ +L+    +GAFLVR  N    +Y +  +   K+ H  + +
Sbjct: 117 NAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEP-NSYAISFRAEGKIKHCRVQQ 175
Query: 341 ITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYL 372
               E QT   +G+  F  L  L+++Y+ H L
Sbjct: 176 ----EGQTV-MLGNSEFDSLVDLISYYEKHPL 202

>pdb|2CIA|A Chain A, Human Nck2 Sh2-Domain In Complex With A Decaphosphopeptide From Translocated Intimin Receptor (Tir) Of Epec Length = 102

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 11 NSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTE 70
          + WY+G +TR +A+  L      G FL+RDS +   ++ + +K + K  H+ +  + N  
Sbjct: 5  SEWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNV- 63
Query: 71 QQTCYKIGDKTFSDLPSLLAFYK 93
              Y IG + F  +  L+  YK
Sbjct: 64 ----YCIGQRRFHTMDELVEHYK 82

>pdb|2CIA|A Chain A, Human Nck2 Sh2-Domain In Complex With A Decaphosphopeptide From Translocated Intimin Receptor (Tir) Of Epec Length = 102

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 286 NSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTE 345
           + WY+G +TR +A+  L      G FL+RDS +   ++ + +K + K  H+ +  + N  
Sbjct: 5   SEWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNV- 63
Query: 346 QQTCYKIGDKTFSDLPSLLAFYK 368
               Y IG + F  +  L+  YK
Sbjct: 64  ----YCIGQRRFHTMDELVEHYK 82

>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2 Length = 165

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 26/128 (20%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVEFIPTNETMPFHSSMKMTGTFD 281
           L    G+  ++  ++    WE      G+TG        +IP+N   P           D
Sbjct: 20  LSFHKGEKFQILNSSEGDWWEARSLTTGETG--------YIPSNYVAPV----------D 61
Query: 282 PHDRNSWYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKE-----NNKVSH 335
                 WYFG + R++A+  LLS  +  G FL+R+S T  G Y L +++      + V H
Sbjct: 62  SIQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKH 121
Query: 336 YIINKITN 343
           Y I K+ N
Sbjct: 122 YKIRKLDN 129

>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2 Length = 165

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 389 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 438
           +A YD++    DDL F K +   +++  E  WW A+++ +GE G IP  YV
Sbjct: 7   VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 57

>pdb|1BM2|A Chain A, Grb2-Sh2 Domain In Complex With Cyclo-[n-Alpha-Acetyl-L-Thi Alysyl-O-Phosphotyrosyl-Valyl-Asparagyl-Valyl-Prolyl] (Pkf273-791) Length = 117

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 7  PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 61
          PH    W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+
Sbjct: 11 PH---PWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHF 62

>pdb|1BM2|A Chain A, Grb2-Sh2 Domain In Complex With Cyclo-[n-Alpha-Acetyl-L-Thi Alysyl-O-Phosphotyrosyl-Valyl-Asparagyl-Valyl-Prolyl] (Pkf273-791) Length = 117

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 282 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 336
           PH    W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+
Sbjct: 11  PH---PWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHF 62

>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn Protein (Proto- Concogene Tyrosine-Protein Kinase Fyn) From Mus Musculus At 1.98 A Resolution Length = 164

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 26/128 (20%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVEFIPTNETMPFHSSMKMTGTFD 281
           L    G+  ++  ++    WE      G+TG        +IP+N   P           D
Sbjct: 21  LSFHKGEKFQILNSSEGDWWEARSLTTGETG--------YIPSNYVAPV----------D 62
Query: 282 PHDRNSWYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKE-----NNKVSH 335
                 WYFG + R++A+  LLS  +  G FL+R+S T  G Y L +++      + V H
Sbjct: 63  SIQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDXKGDHVKH 122
Query: 336 YIINKITN 343
           Y I K+ N
Sbjct: 123 YKIRKLDN 130

>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn Protein (Proto- Concogene Tyrosine-Protein Kinase Fyn) From Mus Musculus At 1.98 A Resolution Length = 164

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 389 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 438
           +A YD++    DDL F K +   +++  E  WW A+++ +GE G IP  YV
Sbjct: 8   VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 58

>pdb|1Z3K|A Chain A, Structural Insight Into The Binding Diversity Between The Tyr-Phosphorylated Human Ephrinbs And Nck2 Sh2 Domain Length = 98

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
          WY+G +TR +A+  L      G FL+RDS +   ++ + +K + K  H+ +  + N    
Sbjct: 3  WYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNV--- 59
Query: 73 TCYKIGDKTFSDLPSLLAFYK 93
            Y IG + F  +  L+  YK
Sbjct: 60 --YCIGQRRFHTMDELVEHYK 78

>pdb|1Z3K|A Chain A, Structural Insight Into The Binding Diversity Between The Tyr-Phosphorylated Human Ephrinbs And Nck2 Sh2 Domain Length = 98

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 347
           WY+G +TR +A+  L      G FL+RDS +   ++ + +K + K  H+ +  + N    
Sbjct: 3   WYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNV--- 59
Query: 348 TCYKIGDKTFSDLPSLLAFYK 368
             Y IG + F  +  L+  YK
Sbjct: 60  --YCIGQRRFHTMDELVEHYK 78

>pdb|2EBP|A Chain A, Solution Structure Of The Sh3 Domain From Human Sam And Sh3 Domain Containing Protein 1 Length = 73

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 33/61 (54%)
Query: 483 ARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET 542
           ARV     P+ YD  +LKL+ GDII +      G W G LN K G F F +V+ + +  +
Sbjct: 12  ARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDVLSSGPS 71
Query: 543 S 543
           S
Sbjct: 72  S 72

>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain Length = 295

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           +VIA YD+  N+ D+L F K  ++ V++KD+  WW  + I+G  G  P  YV+
Sbjct: 20  QVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGE-INGVTGLFPSNYVK 71

>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain Length = 295

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
           +VIA YD+  N+ D+L F K  ++ V++KD+  WW  + I+G  G  P  YV+
Sbjct: 20  QVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGE-INGVTGLFPSNYVK 71

>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 Length = 58

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           +V A YD+D    D+L FK+ D +IV  KD   WW  + ++G+ G +P  YVQ
Sbjct: 5   QVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGE-LNGKRGWVPANYVQ 56

>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 Length = 58

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
           +V A YD+D    D+L FK+ D +IV  KD   WW  + ++G+ G +P  YVQ
Sbjct: 5   QVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGE-LNGKRGWVPANYVQ 56

>pdb|2GSB|A Chain A, Solution Structure Of The Second Sh2 Domain Of Human Ras Gtpase-Activating Protein 1 Length = 119

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 6  DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
          DPH+   W+ G +++QEA  +L++     +FLVR S+   G+Y L  + N  +  + I  
Sbjct: 11 DPHEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQRFKICP 70
Query: 66 ITNTEQQTCYKIGDKTFSDLPSLLAFYK 93
            N +    + +G + ++ +  ++  Y+
Sbjct: 71 TPNNQ----FMMGGRYYNSIGDIIDHYR 94

>pdb|2GSB|A Chain A, Solution Structure Of The Second Sh2 Domain Of Human Ras Gtpase-Activating Protein 1 Length = 119

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 281 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 340
           DPH+   W+ G +++QEA  +L++     +FLVR S+   G+Y L  + N  +  + I  
Sbjct: 11  DPHEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQRFKICP 70
Query: 341 ITNTEQQTCYKIGDKTFSDLPSLLAFYK 368
             N +    + +G + ++ +  ++  Y+
Sbjct: 71  TPNNQ----FMMGGRYYNSIGDIIDHYR 94

>pdb|1OOT|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae Hypothetical 40.4 Kda Protein At 1.39 A Resolution Length = 60

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH--WWTAQNISGEVGSIPVPYVQ 164
           K +A Y F G +  DLPF+K D++ ++ K +    WWT + ++G  G  P  YV+
Sbjct: 5   KAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGR-VNGREGIFPANYVE 58

>pdb|1OOT|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae Hypothetical 40.4 Kda Protein At 1.39 A Resolution Length = 60

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH--WWTAQNISGEVGSIPVPYVQ 439
           K +A Y F G +  DLPF+K D++ ++ K +    WWT + ++G  G  P  YV+
Sbjct: 5   KAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGR-VNGREGIFPANYVE 58

>pdb|1UJY|A Chain A, Solution Structure Of Sh3 Domain In RacCDC42 GUANINE Nucleotide Exchange Factor(Gef) 6 Length = 76

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/45 (48%), Positives = 29/45 (64%)
Query: 504 GDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETNG 548
           GDII VT+    G WEG LNG+TG FP  +V  I ++E S  ++G
Sbjct: 32  GDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKSSERSGPSSG 76

>pdb|2FCI|A Chain A, Structural Basis For The Requirement Of Two Phosphotyrosines In Signaling Mediated By Syk Tyrosine Kinase Length = 105

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 8  HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKIT 67
          H+   WY   +TR +A+ +L+    +GAFLVR  N    +Y +  +   K+ H  + +  
Sbjct: 6  HESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEP-NSYAISFRAEGKIKHCRVQQ-- 62
Query: 68 NTEQQTCYKIGDKTFSDLPSLLAFYKVHYL 97
            E QT   +G+  F  L  L+++Y+ H L
Sbjct: 63 --EGQTVM-LGNSEFDSLVDLISYYEKHPL 89

>pdb|2FCI|A Chain A, Structural Basis For The Requirement Of Two Phosphotyrosines In Signaling Mediated By Syk Tyrosine Kinase Length = 105

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 283 HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKIT 342
           H+   WY   +TR +A+ +L+    +GAFLVR  N    +Y +  +   K+ H  + +  
Sbjct: 6   HESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEP-NSYAISFRAEGKIKHCRVQQ-- 62
Query: 343 NTEQQTCYKIGDKTFSDLPSLLAFYKVHYL 372
             E QT   +G+  F  L  L+++Y+ H L
Sbjct: 63  --EGQTVM-LGNSEFDSLVDLISYYEKHPL 89

>pdb|2YSX|A Chain A, Solution Structure Of The Human Ship Sh2 Domain Length = 119

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII--NKITNT 69
           W  G +TR +A+ +L     +G+FLVR S +I   Y LCV   N V  Y I  N+    
Sbjct: 11 CWNHGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYRNCVYTYRILPNEDDKF 70
Query: 70 EQQTCYKIGDKTFSDLPSLLAFYK 93
            Q    +  + F+ L  L+ FYK
Sbjct: 71 TVQASEGVSMRFFTKLDQLIEFYK 94

>pdb|2YSX|A Chain A, Solution Structure Of The Human Ship Sh2 Domain Length = 119

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 287 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII--NKITNT 344
            W  G +TR +A+ +L     +G+FLVR S +I   Y LCV   N V  Y I  N+    
Sbjct: 11  CWNHGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYRNCVYTYRILPNEDDKF 70
Query: 345 EQQTCYKIGDKTFSDLPSLLAFYK 368
             Q    +  + F+ L  L+ FYK
Sbjct: 71  TVQASEGVSMRFFTKLDQLIEFYK 94

>pdb|2YUO|A Chain A, Solution Structure Of The Sh3 Domain Of Mouse Run And Tbc1 Domain Containing 3 Length = 78

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
           A  DF+ +D D+L F+KNDI+ ++S+ +EH W  + ++G  G  P  +V+   E
Sbjct: 12  ALLDFERHDDDELGFRKNDIITIISQKDEHCWVGE-LNGLRGWFPAKFVEVLDE 64

>pdb|2YUO|A Chain A, Solution Structure Of The Sh3 Domain Of Mouse Run And Tbc1 Domain Containing 3 Length = 78

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 390 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 443
           A  DF+ +D D+L F+KNDI+ ++S+ +EH W  + ++G  G  P  +V+   E
Sbjct: 12  ALLDFERHDDDELGFRKNDIITIISQKDEHCWVGE-LNGLRGWFPAKFVEVLDE 64

>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human Proline- Serine-Threonine Phosphatase-Interacting Protein 1 Length = 69

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
           A YD+   +PD+L     DIL V+ + E+ WWT +  +G+ G +P  Y++K S
Sbjct: 13  ALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVER-NGQRGFVPGSYLEKLS 64

>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human Proline- Serine-Threonine Phosphatase-Interacting Protein 1 Length = 69

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 390 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 442
           A YD+   +PD+L     DIL V+ + E+ WWT +  +G+ G +P  Y++K S
Sbjct: 13  ALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVER-NGQRGFVPGSYLEKLS 64

>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l Length = 283

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           +VI  YD+   + D+L F K  I+ V++K++  WW  + +SG+VG  P  YV+
Sbjct: 4   QVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGE-VSGQVGLFPSNYVK 55

>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l Length = 283

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
           +VI  YD+   + D+L F K  I+ V++K++  WW  + +SG+VG  P  YV+
Sbjct: 4   QVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGE-VSGQVGLFPSNYVK 55

>pdb|2ECD|A Chain A, Solution Structure Of The Human Abl2 Sh2 Domain Length = 119

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 9  DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 68
          +++SWY G ++R  A+  LLS   NG+FLVR+S +  G   + ++   +V HY IN    
Sbjct: 14 EKHSWYHGPVSRSAAE-YLLSSLINGSFLVRESESSPGQLSISLRYEGRVYHYRIN---T 69
Query: 69 TEQQTCYKIGDKTFSDLPSLL 89
          T     Y   +  FS L  L+
Sbjct: 70 TADGKVYVTAESRFSTLAELV 90

>pdb|2ECD|A Chain A, Solution Structure Of The Human Abl2 Sh2 Domain Length = 119

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 284 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 343
           +++SWY G ++R  A+  LLS   NG+FLVR+S +  G   + ++   +V HY IN    
Sbjct: 14  EKHSWYHGPVSRSAAE-YLLSSLINGSFLVRESESSPGQLSISLRYEGRVYHYRIN---T 69
Query: 344 TEQQTCYKIGDKTFSDLPSLL 364
           T     Y   +  FS L  L+
Sbjct: 70  TADGKVYVTAESRFSTLAELV 90

>pdb|1GL5|A Chain A, Nmr Structure Of The Sh3 Domain From The Tec Protein Tyrosine Kinase Length = 67

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
           E V+A YDF   +  DL  ++    I++ K++ HWW A++  G  G IP  YV
Sbjct: 3   EIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYV 55

>pdb|1GL5|A Chain A, Nmr Structure Of The Sh3 Domain From The Tec Protein Tyrosine Kinase Length = 67

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 438
           E V+A YDF   +  DL  ++    I++ K++ HWW A++  G  G IP  YV
Sbjct: 3   EIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYV 55

>pdb|2GE9|A Chain A, Solution Structures Of The Sh2 Domain Of Bruton's Tyrosine Kinase Length = 125

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
Query: 1  MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNK--- 57
          MT   D  +   WY   MTR +A+ +L  E   G F+VRDS+   G Y + V   +    
Sbjct: 1  MTEAEDSIEMYEWYSKHMTRSQAEQLLKQEGKEGGFIVRDSSKA-GKYTVSVFAKSTGDP 59
Query: 58 ---VSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYK 93
             + HY+   + +T Q   Y      FS +P L+ +++
Sbjct: 60 QGVIRHYV---VCSTPQSQYYLAEKHLFSTIPELINYHQ 95

>pdb|2GE9|A Chain A, Solution Structures Of The Sh2 Domain Of Bruton's Tyrosine Kinase Length = 125

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
Query: 276 MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNK--- 332
           MT   D  +   WY   MTR +A+ +L  E   G F+VRDS+   G Y + V   +    
Sbjct: 1   MTEAEDSIEMYEWYSKHMTRSQAEQLLKQEGKEGGFIVRDSSKA-GKYTVSVFAKSTGDP 59
Query: 333 ---VSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYK 368
              + HY+   + +T Q   Y      FS +P L+ +++
Sbjct: 60  QGVIRHYV---VCSTPQSQYYLAEKHLFSTIPELINYHQ 95

>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 Length = 59

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           +V A YD+D    D+L FK+ D +IV  KD   WW  + ++G+ G +P  YVQ
Sbjct: 6   QVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGE-LNGKRGWVPANYVQ 57

>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 Length = 59

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
           +V A YD+D    D+L FK+ D +IV  KD   WW  + ++G+ G +P  YVQ
Sbjct: 6   QVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGE-LNGKRGWVPANYVQ 57

>pdb|2AUG|A Chain A, Crystal Structure Of The Grb14 Sh2 Domain Length = 126

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 8   HDRNSWYFGMMTRQEAQAILLSEK-DNGAFLVRDSNTILGNYVLCVKENNKVSHY-IINK 65
           H    W+   ++R EAQ +++ +   +G FLVRDS +    +VL +    K+ H+ II  
Sbjct: 23  HRSQPWFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTFVLSMSHGQKIKHFQIIPV 82
Query: 66  ITNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
             + E       G   F+DL  L+ FY+++
Sbjct: 83  EDDGEMFHTLDDGHTRFTDLIQLVEFYQLN 112

>pdb|2AUG|A Chain A, Crystal Structure Of The Grb14 Sh2 Domain Length = 126

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 283 HDRNSWYFGMMTRQEAQAILLSEK-DNGAFLVRDSNTILGNYVLCVKENNKVSHY-IINK 340
           H    W+   ++R EAQ +++ +   +G FLVRDS +    +VL +    K+ H+ II  
Sbjct: 23  HRSQPWFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTFVLSMSHGQKIKHFQIIPV 82
Query: 341 ITNTEQQTCYKIGDKTFSDLPSLLAFYKVH 370
             + E       G   F+DL  L+ FY+++
Sbjct: 83  EDDGEMFHTLDDGHTRFTDLIQLVEFYQLN 112

>pdb|3NHN|A Chain A, Crystal Structure Of The Src-Family Kinase Hck Sh3-Sh2-Linker Regulatory Region Length = 193

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 19/114 (16%)
Query: 261 FIPTNETMPFHSSMKMTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTI 319
           +IP+N               D  +   W+F  ++R++A+  LL+  +  G+F++RDS T 
Sbjct: 56  YIPSN----------YVARVDSLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETT 105
Query: 320 LGNYVLCV-----KENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYK 368
            G+Y L V     ++ + V HY I  + N      Y     TFS L  L+  YK
Sbjct: 106 KGSYSLSVRDYDPRQGDTVKHYKIRTLDNG---GFYISPRSTFSTLQELVDHYK 156

>pdb|2XMF|A Chain A, Myosin 1e Sh3 Length = 60

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 101 PLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPV 160
           PL  P  K      A Y +D  D D+L F  NDI+ ++ +D   WWT + + G+ G  P 
Sbjct: 2   PLGSPQCK------ALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGR-LRGKQGLFPN 54
Query: 161 PYVQK 165
            YV K
Sbjct: 55  NYVTK 59

>pdb|2XMF|A Chain A, Myosin 1e Sh3 Length = 60

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 376 PLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPV 435
           PL  P  K      A Y +D  D D+L F  NDI+ ++ +D   WWT + + G+ G  P 
Sbjct: 2   PLGSPQCK------ALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGR-LRGKQGLFPN 54
Query: 436 PYVQK 440
            YV K
Sbjct: 55  NYVTK 59

>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex Length = 438

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 6   DPHDRNSWYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCV-----KENNKVS 59
           D  +   W+F  ++R++A+  LL+  +  G+F++RDS T  G+Y L V     ++ + V 
Sbjct: 59  DSLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVK 118
Query: 60  HYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYK 93
           HY I  + N      Y     TFS L  L+  YK
Sbjct: 119 HYKIRTLDNG---GFYISPRSTFSTLQELVDHYK 149

>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex Length = 438

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 281 DPHDRNSWYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCV-----KENNKVS 334
           D  +   W+F  ++R++A+  LL+  +  G+F++RDS T  G+Y L V     ++ + V 
Sbjct: 59  DSLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVK 118
Query: 335 HYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYK 368
           HY I  + N      Y     TFS L  L+  YK
Sbjct: 119 HYKIRTLDNG---GFYISPRSTFSTLQELVDHYK 149

>pdb|1RJA|A Chain A, Solution Structure And Backbone Dynamics Of The Nonreceptor Tyrosine Kinase Ptk6BRK SH2 DOMAIN Length = 100

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 13 WYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 71
          W+FG ++R EA   L +E +  GAFL+R S     +YVL V++   V HY I +      
Sbjct: 4  WFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGRL 63
Query: 72 QTCYKIGDKTFSDLPSLLAFYKVHYL 97
               +   +F  LP L+ +++   L
Sbjct: 64 HLNEAV---SFLSLPELVNYHRAQSL 86

>pdb|1RJA|A Chain A, Solution Structure And Backbone Dynamics Of The Nonreceptor Tyrosine Kinase Ptk6BRK SH2 DOMAIN Length = 100

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 288 WYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 346
           W+FG ++R EA   L +E +  GAFL+R S     +YVL V++   V HY I +      
Sbjct: 4   WFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGRL 63
Query: 347 QTCYKIGDKTFSDLPSLLAFYKVHYL 372
                +   +F  LP L+ +++   L
Sbjct: 64  HLNEAV---SFLSLPELVNYHRAQSL 86

>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 6   DPHDRNSWYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCV-----KENNKVS 59
           D  +   W+F  ++R++A+  LL+  +  G+F++RDS T  G+Y L V     ++ + V 
Sbjct: 65  DSLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVK 124
Query: 60  HYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYK 93
           HY I  + N      Y     TFS L  L+  YK
Sbjct: 125 HYKIRTLDNG---GFYISPRSTFSTLQELVDHYK 155

>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 281 DPHDRNSWYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCV-----KENNKVS 334
           D  +   W+F  ++R++A+  LL+  +  G+F++RDS T  G+Y L V     ++ + V 
Sbjct: 65  DSLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVK 124
Query: 335 HYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYK 368
           HY I  + N      Y     TFS L  L+  YK
Sbjct: 125 HYKIRTLDNG---GFYISPRSTFSTLQELVDHYK 155

>pdb|2D8H|A Chain A, Solution Structure Of The Sh3 Domain Of Hypothetical Protein Sh3yl1 Length = 80

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH--WWTAQNISGEVGSIPVPYV 163
           +V A Y F+G  P DL F+  D + V+SK + H  WW  + + G+ G  P  YV
Sbjct: 19  EVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGK-LRGQTGIFPANYV 71

>pdb|2D8H|A Chain A, Solution Structure Of The Sh3 Domain Of Hypothetical Protein Sh3yl1 Length = 80

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH--WWTAQNISGEVGSIPVPYV 438
           +V A Y F+G  P DL F+  D + V+SK + H  WW  + + G+ G  P  YV
Sbjct: 19  EVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGK-LRGQTGIFPANYV 71

>pdb|2A08|A Chain A, Structure Of The Yeast Yhh6 Sh3 Domain Length = 60

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEH--WWTAQNISGEVGSIPVPYVQ 164
           +A Y+F G  P DL FKK D++ ++ K +    WWT +  +G+ G  P  YV+
Sbjct: 7   VALYNFAGEQPGDLAFKKGDVITILKKSDSQNDWWTGRT-NGKEGIFPANYVR 58

>pdb|2A08|A Chain A, Structure Of The Yeast Yhh6 Sh3 Domain Length = 60

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 389 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEH--WWTAQNISGEVGSIPVPYVQ 439
           +A Y+F G  P DL FKK D++ ++ K +    WWT +  +G+ G  P  YV+
Sbjct: 7   VALYNFAGEQPGDLAFKKGDVITILKKSDSQNDWWTGRT-NGKEGIFPANYVR 58

>pdb|1AYA|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino- Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase Length = 101

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
          W+   +T  EA+ +LL+   +G+FL R S +  G++ L V+ N  V+H    KI NT   
Sbjct: 4  WFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHI---KIQNTGDY 60
Query: 73 TCYKIGDKTFSDLPSLLAFYKVHY 96
               G+K F+ L  L+ +Y  H+
Sbjct: 61 YDLYGGEK-FATLAELVQYYMEHH 83

>pdb|1AYA|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino- Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase Length = 101

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 347
           W+   +T  EA+ +LL+   +G+FL R S +  G++ L V+ N  V+H    KI NT   
Sbjct: 4   WFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHI---KIQNTGDY 60
Query: 348 TCYKIGDKTFSDLPSLLAFYKVHY 371
                G+K F+ L  L+ +Y  H+
Sbjct: 61  YDLYGGEK-FATLAELVQYYMEHH 83

>pdb|1TCE|A Chain A, Solution Nmr Structure Of The Shc Sh2 Domain Complexed With A Tyrosine-Phosphorylated Peptide From The T-Cell Receptor, Minimized Average Structure Length = 107

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 52/96 (54%), Gaps = 11/96 (11%)
Query: 13  WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
           W+ G ++R+EA+A+L   + NG FLVR+S T  G YVL   ++ +  H ++      + +
Sbjct: 9   WFHGKLSRREAEALL---QLNGDFLVRESTTTPGQYVLTGSQSGQPKHLLL-----VDPE 60
Query: 73  TCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK 108
              +  D  F  +  L++++  ++L   P+I   ++
Sbjct: 61  GVVRTKDHRFESVSHLISYHMDNHL---PIISAGSE 93

>pdb|1TCE|A Chain A, Solution Nmr Structure Of The Shc Sh2 Domain Complexed With A Tyrosine-Phosphorylated Peptide From The T-Cell Receptor, Minimized Average Structure Length = 107

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 52/96 (54%), Gaps = 11/96 (11%)
Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 347
           W+ G ++R+EA+A+L   + NG FLVR+S T  G YVL   ++ +  H ++      + +
Sbjct: 9   WFHGKLSRREAEALL---QLNGDFLVRESTTTPGQYVLTGSQSGQPKHLLL-----VDPE 60
Query: 348 TCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK 383
              +  D  F  +  L++++  ++L   P+I   ++
Sbjct: 61  GVVRTKDHRFESVSHLISYHMDNHL---PIISAGSE 93

>pdb|1AOT|F Chain F, Nmr Structure Of The Fyn Sh2 Domain Complexed With A Phosphotyrosyl Peptide, Minimized Average Structure Length = 106

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 13 WYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKI 66
          WYFG + R++A+  LLS  +  G FL+R+S T  G Y L +++      + V HY I K+
Sbjct: 7  WYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKL 66
Query: 67 TN 68
           N
Sbjct: 67 DN 68

>pdb|1AOT|F Chain F, Nmr Structure Of The Fyn Sh2 Domain Complexed With A Phosphotyrosyl Peptide, Minimized Average Structure Length = 106

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 288 WYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKI 341
           WYFG + R++A+  LLS  +  G FL+R+S T  G Y L +++      + V HY I K+
Sbjct: 7   WYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKL 66
Query: 342 TN 343
            N
Sbjct: 67  DN 68

>pdb|2EOB|A Chain A, Solution Structure Of The Second Sh2 Domain From Rat Plc Gamma-2 Length = 124

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 6   DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
           +PH+   WY+  ++R EA+ +L+    +GAFL+R       +Y +  +   KV H  IN+
Sbjct: 14  NPHESKPWYYDRLSRGEAEDMLMRIPRDGAFLIRKREGT-DSYAITFRARGKVKHCRINR 72
Query: 66  ITNTEQQTCYKIGDKT-FSDLPSLLAFYKVHYL 97
                    + +G    F  L  L+++Y+ H L
Sbjct: 73  -----DGRHFVLGTSAYFESLVELVSYYEKHAL 100

>pdb|2EOB|A Chain A, Solution Structure Of The Second Sh2 Domain From Rat Plc Gamma-2 Length = 124

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 281 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 340
           +PH+   WY+  ++R EA+ +L+    +GAFL+R       +Y +  +   KV H  IN+
Sbjct: 14  NPHESKPWYYDRLSRGEAEDMLMRIPRDGAFLIRKREGT-DSYAITFRARGKVKHCRINR 72
Query: 341 ITNTEQQTCYKIGDKT-FSDLPSLLAFYKVHYL 372
                    + +G    F  L  L+++Y+ H L
Sbjct: 73  -----DGRHFVLGTSAYFESLVELVSYYEKHAL 100

>pdb|2I0N|A Chain A, Structure Of Dictyostelium Discoideum Myosin Vii Sh3 Domain With Adjacent Proline Rich Region Length = 80

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 5/56 (8%)
Query: 114 IAKY-----DFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
            AKY     D++ +D   LPFK+NDI+ +  KD+E+ W    ++G+ GS PV +V+
Sbjct: 9   FAKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVE 64

>pdb|2I0N|A Chain A, Structure Of Dictyostelium Discoideum Myosin Vii Sh3 Domain With Adjacent Proline Rich Region Length = 80

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 5/56 (8%)
Query: 389 IAKY-----DFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
            AKY     D++ +D   LPFK+NDI+ +  KD+E+ W    ++G+ GS PV +V+
Sbjct: 9   FAKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVE 64

>pdb|3TL0|A Chain A, Structure Of Shp2 N-Sh2 Domain In Complex With Rlnpyaqlwhr Peptide Length = 109

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
          W+   +T  EA+ +LL+   +G+FL R S +  G++ L V+ N  V+H    KI NT   
Sbjct: 9  WFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHI---KIQNTGDY 65
Query: 73 TCYKIGDKTFSDLPSLLAFYKVHY 96
               G+K F+ L  L+ +Y  H+
Sbjct: 66 YDLYGGEK-FATLAELVQYYMEHH 88

>pdb|3TL0|A Chain A, Structure Of Shp2 N-Sh2 Domain In Complex With Rlnpyaqlwhr Peptide Length = 109

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 347
           W+   +T  EA+ +LL+   +G+FL R S +  G++ L V+ N  V+H    KI NT   
Sbjct: 9   WFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHI---KIQNTGDY 65
Query: 348 TCYKIGDKTFSDLPSLLAFYKVHY 371
                G+K F+ L  L+ +Y  H+
Sbjct: 66  YDLYGGEK-FATLAELVQYYMEHH 88

>pdb|4GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain Complexed With A Ten-Residue Peptide Derived From Sos Direct Refinement Against Noes, J-Couplings, And 1h And 13c Chemical Shifts, 15 Structures Length = 74

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 33/53 (62%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           + IAKYDF     D+L FK+ DIL V++++ +  W    ++G+ G IP  Y++
Sbjct: 11  EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIE 63

>pdb|4GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain Complexed With A Ten-Residue Peptide Derived From Sos Direct Refinement Against Noes, J-Couplings, And 1h And 13c Chemical Shifts, 15 Structures Length = 74

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 33/53 (62%)
Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
           + IAKYDF     D+L FK+ DIL V++++ +  W    ++G+ G IP  Y++
Sbjct: 11  EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIE 63

>pdb|3HAJ|A Chain A, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121 Lattice) Length = 486

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 98  DTSPLIKPATKTIE-KVIAKYDFDGNDPDDLPFKKNDILIVVS-KDEEHWWTAQNISGEV 155
           D++P    AT   E +V A YD++G + D+L FK  D L  +  +DE+ W   +  +G+V
Sbjct: 415 DSNPFDDDATSGTEVRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQV 474
Query: 156 GSIPVPYVQ 164
           G  P  YV+
Sbjct: 475 GLYPANYVE 483

>pdb|3HAJ|A Chain A, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121 Lattice) Length = 486

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 373 DTSPLIKPATKTIE-KVIAKYDFDGNDPDDLPFKKNDILIVVS-KDEEHWWTAQNISGEV 430
           D++P    AT   E +V A YD++G + D+L FK  D L  +  +DE+ W   +  +G+V
Sbjct: 415 DSNPFDDDATSGTEVRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQV 474
Query: 431 GSIPVPYVQ 439
           G  P  YV+
Sbjct: 475 GLYPANYVE 483

>pdb|1AB2|A Chain A, Three-Dimensional Solution Structure Of The Src Homology 2 Domain Of C-Abl Length = 109

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 3  GTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYI 62
          G+ +  +++SWY G ++R  A+  LLS   NG+FLVR+S +  G   + ++   +V HY 
Sbjct: 1  GSGNSLEKHSWYHGPVSRNAAE-YLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYR 59
Query: 63 INKITN 68
          IN  ++
Sbjct: 60 INTASD 65

>pdb|1AB2|A Chain A, Three-Dimensional Solution Structure Of The Src Homology 2 Domain Of C-Abl Length = 109

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 278 GTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYI 337
           G+ +  +++SWY G ++R  A+  LLS   NG+FLVR+S +  G   + ++   +V HY 
Sbjct: 1   GSGNSLEKHSWYHGPVSRNAAE-YLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYR 59
Query: 338 INKITN 343
           IN  ++
Sbjct: 60  INTASD 65

>pdb|4HXJ|A Chain A, Crystal Structure Of Sh3:rgt Complex Length = 60

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYV 163
           +A YD++     DL FKK + L +V+  E  WW A ++S G+ G IP  YV
Sbjct: 6   VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56

>pdb|4HXJ|A Chain A, Crystal Structure Of Sh3:rgt Complex Length = 60

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 389 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYV 438
           +A YD++     DL FKK + L +V+  E  WW A ++S G+ G IP  YV
Sbjct: 6   VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56

>pdb|1MIL|A Chain A, Transforming Protein Length = 104

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 52/96 (54%), Gaps = 11/96 (11%)
Query: 13  WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
           W+ G ++R+EA+A+L   + NG FLVR+S T  G YVL   ++ +  H ++      + +
Sbjct: 9   WFHGKLSRREAEALL---QLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLL-----VDPE 60
Query: 73  TCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK 108
              +  D  F  +  L++++  ++L   P+I   ++
Sbjct: 61  GVVRTKDHRFESVSHLISYHMDNHL---PIISAGSE 93

>pdb|1MIL|A Chain A, Transforming Protein Length = 104

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 52/96 (54%), Gaps = 11/96 (11%)
Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 347
           W+ G ++R+EA+A+L   + NG FLVR+S T  G YVL   ++ +  H ++      + +
Sbjct: 9   WFHGKLSRREAEALL---QLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLL-----VDPE 60
Query: 348 TCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK 383
              +  D  F  +  L++++  ++L   P+I   ++
Sbjct: 61  GVVRTKDHRFESVSHLISYHMDNHL---PIISAGSE 93

>pdb|1QWE|A Chain A, C-Src Sh3 Domain Complexed With Ligand App12 Length = 64

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
           +   +A YD++     DL FKK + L +V+  E  WW A ++ +G+ G IP  YV
Sbjct: 7   VTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 61

>pdb|1QWE|A Chain A, C-Src Sh3 Domain Complexed With Ligand App12 Length = 64

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 438
           +   +A YD++     DL FKK + L +V+  E  WW A ++ +G+ G IP  YV
Sbjct: 7   VTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 61

>pdb|1PRL|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain: Development Of A General Model For Sh3-Ligand Interactions Length = 64

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
           +   +A YD++     DL FKK + L +V+  E  WW A ++ +G+ G IP  YV
Sbjct: 7   VTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 61

>pdb|1PRL|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain: Development Of A General Model For Sh3-Ligand Interactions Length = 64

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 438
           +   +A YD++     DL FKK + L +V+  E  WW A ++ +G+ G IP  YV
Sbjct: 7   VTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 61

>pdb|3HCK|A Chain A, Nmr Ensemble Of The Uncomplexed Human Hck Sh2 Domain, 20 Structures Length = 107

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 13 WYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCV-----KENNKVSHYIINKI 66
          W+F  ++R++A+  LL+  +  G+F++RDS T  G+Y L V     ++ + V HY   KI
Sbjct: 6  WFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHY---KI 62
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYK 93
             +    Y     TFS L  L+  YK
Sbjct: 63 RTLDNGGFYISPRSTFSTLQELVDHYK 89

>pdb|3HCK|A Chain A, Nmr Ensemble Of The Uncomplexed Human Hck Sh2 Domain, 20 Structures Length = 107

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 288 WYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCV-----KENNKVSHYIINKI 341
           W+F  ++R++A+  LL+  +  G+F++RDS T  G+Y L V     ++ + V HY   KI
Sbjct: 6   WFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHY---KI 62
Query: 342 TNTEQQTCYKIGDKTFSDLPSLLAFYK 368
              +    Y     TFS L  L+  YK
Sbjct: 63  RTLDNGGFYISPRSTFSTLQELVDHYK 89

>pdb|2SHP|A Chain A, Tyrosine Phosphatase Shp-2 Length = 525

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 16/92 (17%)
Query: 13  WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVK------ENN----KVSHYI 62
           W+ G ++ +EA+ +L  +  +G+FLVR+S +  G++VL V+      E+N    KV+H +
Sbjct: 112 WFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVM 171
Query: 63  INKITNTEQQTCYKI-GDKTFSDLPSLLAFYK 93
           I       Q+  Y + G + F  L  L+  YK
Sbjct: 172 IRC-----QELKYDVGGGERFDSLTDLVEHYK 198

>pdb|2SHP|A Chain A, Tyrosine Phosphatase Shp-2 Length = 525

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 16/92 (17%)
Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVK------ENN----KVSHYI 337
           W+ G ++ +EA+ +L  +  +G+FLVR+S +  G++VL V+      E+N    KV+H +
Sbjct: 112 WFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVM 171
Query: 338 INKITNTEQQTCYKI-GDKTFSDLPSLLAFYK 368
           I       Q+  Y + G + F  L  L+  YK
Sbjct: 172 IRC-----QELKYDVGGGERFDSLTDLVEHYK 198

>pdb|3S9K|A Chain A, Crystal Structure Of The Itk Sh2 Domain Length = 118

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCV------KENNKVSHYIINKI 66
          WY   ++R +A+ +LL     GAF+VRDS T  G Y + V       EN  + HY I K 
Sbjct: 11 WYNKSISRDKAEKLLLDTGKEGAFMVRDSRT-PGTYTVSVFTKAIISENPCIKHYHI-KE 68
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYK 93
          TN   +  Y      F  +P L+ +++
Sbjct: 69 TNDSPKRYYVAEKYVFDSIPLLIQYHQ 95

>pdb|3S9K|A Chain A, Crystal Structure Of The Itk Sh2 Domain Length = 118

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCV------KENNKVSHYIINKI 341
           WY   ++R +A+ +LL     GAF+VRDS T  G Y + V       EN  + HY I K 
Sbjct: 11  WYNKSISRDKAEKLLLDTGKEGAFMVRDSRT-PGTYTVSVFTKAIISENPCIKHYHI-KE 68
Query: 342 TNTEQQTCYKIGDKTFSDLPSLLAFYK 368
           TN   +  Y      F  +P L+ +++
Sbjct: 69  TNDSPKRYYVAEKYVFDSIPLLIQYHQ 95

>pdb|1WI7|A Chain A, Solution Structure Of The Sh3 Domain Of Sh3-Domain Kinase Binding Protein 1 Length = 68

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFP 255
           L+L++GDII+V      G WEG LNGKTG FP
Sbjct: 24  LELKVGDIIEVVGEVEEGWWEGVLNGKTGMFP 55

>pdb|1WI7|A Chain A, Solution Structure Of The Sh3 Domain Of Sh3-Domain Kinase Binding Protein 1 Length = 68

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 499 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFP 530
           L+L++GDII+V      G WEG LNGKTG FP
Sbjct: 24  LELKVGDIIEVVGEVEEGWWEGVLNGKTGMFP 55

>pdb|1UUE|A Chain A, A-Spectrin Sh3 Domain (V44t, D48g Mutant) Length = 62

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           E V+A YD+    P ++  KK DIL +++   + WW  + ++G  G +P  YV+K
Sbjct: 7   ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKTE-VNGRQGFVPAAYVKK 60

>pdb|1UUE|A Chain A, A-Spectrin Sh3 Domain (V44t, D48g Mutant) Length = 62

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 440
           E V+A YD+    P ++  KK DIL +++   + WW  + ++G  G +P  YV+K
Sbjct: 7   ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKTE-VNGRQGFVPAAYVKK 60

>pdb|1AWJ|A Chain A, Intramolecular Itk-Proline Complex, Nmr, Minimized Average Structure Length = 77

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
           VIA YD+  NDP +L  + ++   ++   E HWW  Q+ +G  G  P  Y+
Sbjct: 23  VIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYL 73

>pdb|1AWJ|A Chain A, Intramolecular Itk-Proline Complex, Nmr, Minimized Average Structure Length = 77

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 438
           VIA YD+  NDP +L  + ++   ++   E HWW  Q+ +G  G  P  Y+
Sbjct: 23  VIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYL 73

>pdb|1AVZ|C Chain C, V-1 Nef Protein In Complex With Wild Type Fyn Sh3 Domain Length = 57

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
           +A YD++    DDL F K +   +++  E  WW A+++ +GE G IP  YV
Sbjct: 4   VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 54

>pdb|1AVZ|C Chain C, V-1 Nef Protein In Complex With Wild Type Fyn Sh3 Domain Length = 57

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 389 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 438
           +A YD++    DDL F K +   +++  E  WW A+++ +GE G IP  YV
Sbjct: 4   VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 54

>pdb|1BK2|A Chain A, A-Spectrin Sh3 Domain D48g Mutant Length = 57

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           E V+A YD+    P ++  KK DIL +++   + WW  + ++G  G +P  YV+K
Sbjct: 2   ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE-VNGRQGFVPAAYVKK 55

>pdb|1BK2|A Chain A, A-Spectrin Sh3 Domain D48g Mutant Length = 57

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 440
           E V+A YD+    P ++  KK DIL +++   + WW  + ++G  G +P  YV+K
Sbjct: 2   ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE-VNGRQGFVPAAYVKK 55

>pdb|1AWW|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, 42 Structures Length = 67

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 106 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           +T  ++KV+A YD+   + +DL  +K D   ++ +    WW A++ +G+ G IP  YV +
Sbjct: 4   STSELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTE 63

>pdb|1AWW|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, 42 Structures Length = 67

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 381 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 440
           +T  ++KV+A YD+   + +DL  +K D   ++ +    WW A++ +G+ G IP  YV +
Sbjct: 4   STSELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTE 63

>pdb|2L2P|A Chain A, Folding Intermediate Of The Fyn Sh3 A39vN53PV55L FROM NMR RELAXATION Dispersion Experiments Length = 66

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
           A YD++    DDL F K +   +++  E  WW  +++ +GE G IP PY+
Sbjct: 12  ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEVRSLTTGETGYIPSPYL 61

>pdb|2L2P|A Chain A, Folding Intermediate Of The Fyn Sh3 A39vN53PV55L FROM NMR RELAXATION Dispersion Experiments Length = 66

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 390 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 438
           A YD++    DDL F K +   +++  E  WW  +++ +GE G IP PY+
Sbjct: 12  ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEVRSLTTGETGYIPSPYL 61

>pdb|3UA6|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain Length = 64

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
           +A YD++    DDL F K +   +++  E  WW A+++ +GE G IP  YV
Sbjct: 9   VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 59

>pdb|3UA6|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain Length = 64

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 389 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 438
           +A YD++    DDL F K +   +++  E  WW A+++ +GE G IP  YV
Sbjct: 9   VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 59

>pdb|2K79|A Chain A, Solution Structure Of The Binary Complex Between The Sh3 And Sh2 Domain Of Interleukin-2 Tyrosine Kinase Length = 63

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
           VIA YD+  NDP +L  + ++   ++   E HWW  Q+ +G  G  P  Y+ + S
Sbjct: 8   VIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVEKS 62

>pdb|2K79|A Chain A, Solution Structure Of The Binary Complex Between The Sh3 And Sh2 Domain Of Interleukin-2 Tyrosine Kinase Length = 63

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 442
           VIA YD+  NDP +L  + ++   ++   E HWW  Q+ +G  G  P  Y+ + S
Sbjct: 8   VIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVEKS 62

>pdb|4ESR|A Chain A, Molecular And Structural Characterization Of The Sh3 Domain Of Ahi-1 In Regulation Of Cellular Resistance Of Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine Kinase Inhibitors Length = 69

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Query: 95  HYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGE 154
           H +DT+P           V+A YD+  N  D+L   + DI+ V  KD E WW      G+
Sbjct: 1   HQVDTAP----------TVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQ 50
Query: 155 VGSIPVPYV 163
            G  P  +V
Sbjct: 51  EGYFPANHV 59

>pdb|4ESR|A Chain A, Molecular And Structural Characterization Of The Sh3 Domain Of Ahi-1 In Regulation Of Cellular Resistance Of Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine Kinase Inhibitors Length = 69

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Query: 370 HYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGE 429
           H +DT+P           V+A YD+  N  D+L   + DI+ V  KD E WW      G+
Sbjct: 1   HQVDTAP----------TVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQ 50
Query: 430 VGSIPVPYV 438
            G  P  +V
Sbjct: 51  EGYFPANHV 59

>pdb|3K2M|A Chain A, Crystal Structure Of Monobody Ha4ABL1 SH2 DOMAIN COMPLEX Length = 112

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 9  DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 68
          +++SWY G ++R  A+  LLS   NG+FLVR+S +  G   + ++   +V HY IN  ++
Sbjct: 3  EKHSWYHGPVSRNAAE-YLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 61

>pdb|3K2M|A Chain A, Crystal Structure Of Monobody Ha4ABL1 SH2 DOMAIN COMPLEX Length = 112

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 284 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 343
           +++SWY G ++R  A+  LLS   NG+FLVR+S +  G   + ++   +V HY IN  ++
Sbjct: 3   EKHSWYHGPVSRNAAE-YLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 61

>pdb|3FJ5|A Chain A, Crystal Structure Of The C-Src-Sh3 Domain Length = 57

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
           +A YD++     DL FKK + L +V+  E  WW A ++ +G  G IP  YV
Sbjct: 4   VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGRTGYIPSNYV 54

>pdb|3FJ5|A Chain A, Crystal Structure Of The C-Src-Sh3 Domain Length = 57

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 389 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 438
           +A YD++     DL FKK + L +V+  E  WW A ++ +G  G IP  YV
Sbjct: 4   VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGRTGYIPSNYV 54

>pdb|1FYN|A Chain A, Phosphotransferase Length = 62

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
           +A YD++    DDL F K +   +++  E  WW A+++ +GE G IP  YV
Sbjct: 8   VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 58

>pdb|1FYN|A Chain A, Phosphotransferase Length = 62

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 389 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 438
           +A YD++    DDL F K +   +++  E  WW A+++ +GE G IP  YV
Sbjct: 8   VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 58

>pdb|2X3W|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 2) Length = 60

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQ 164
           +V A YD+DG + D+L FK  D L  + +++E  W    + SG++G  P  YV+
Sbjct: 5   RVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVE 58

>pdb|2X3W|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 2) Length = 60

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQ 439
           +V A YD+DG + D+L FK  D L  + +++E  W    + SG++G  P  YV+
Sbjct: 5   RVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVE 58

>pdb|2RN8|A Chain A, Nmr Structure Note: Murine Itk Sh3 Domain Length = 64

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
           VIA YD+  NDP +L  + ++   ++   E HWW  Q+ +G  G  P  Y+ + S
Sbjct: 8   VIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVEKS 62

>pdb|2RN8|A Chain A, Nmr Structure Note: Murine Itk Sh3 Domain Length = 64

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 442
           VIA YD+  NDP +L  + ++   ++   E HWW  Q+ +G  G  P  Y+ + S
Sbjct: 8   VIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVEKS 62

>pdb|1A0N|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene Tyrosine Kinase Complexed With The Synthetic Peptide P2l Corresponding To Residues 91-104 Of The P85 Subunit Of Pi3- Kinase, Family Of 25 Structures Length = 69

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
           +A YD++    DDL F K +   +++  E  WW A+++ +GE G IP  YV
Sbjct: 9   VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 59

>pdb|1A0N|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene Tyrosine Kinase Complexed With The Synthetic Peptide P2l Corresponding To Residues 91-104 Of The P85 Subunit Of Pi3- Kinase, Family Of 25 Structures Length = 69

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 389 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 438
           +A YD++    DDL F K +   +++  E  WW A+++ +GE G IP  YV
Sbjct: 9   VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 59

>pdb|1SHF|A Chain A, Crystal Structure Of The Sh3 Domain In Human Fyn; Comparison Of The Three-Dimensional Structures Of Sh3 Domains In Tyrosine Kinases And Spectrin Length = 59

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
           +A YD++    DDL F K +   +++  E  WW A+++ +GE G IP  YV
Sbjct: 5   VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 55

>pdb|1SHF|A Chain A, Crystal Structure Of The Sh3 Domain In Human Fyn; Comparison Of The Three-Dimensional Structures Of Sh3 Domains In Tyrosine Kinases And Spectrin Length = 59

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 389 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 438
           +A YD++    DDL F K +   +++  E  WW A+++ +GE G IP  YV
Sbjct: 5   VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 55

>pdb|1I3Z|A Chain A, Murine Eat2 Sh2 Domain In Complex With Slam Phosphopeptide Length = 103

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
          +Y G +T++E +A+LL    +G FL+RDS ++ G   LCV     V  Y I +    E+ 
Sbjct: 5  YYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFR----EKH 60
Query: 73 TCYKI 77
            Y+I
Sbjct: 61 GYYRI 65

>pdb|1I3Z|A Chain A, Murine Eat2 Sh2 Domain In Complex With Slam Phosphopeptide Length = 103

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 347
           +Y G +T++E +A+LL    +G FL+RDS ++ G   LCV     V  Y I +    E+ 
Sbjct: 5   YYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFR----EKH 60
Query: 348 TCYKI 352
             Y+I
Sbjct: 61  GYYRI 65

>pdb|2YT6|A Chain A, Solution Structure Of The Sh3_1 Domain Of Yamaguchi Sarcoma Viral (V-Yes) Oncogene Homolog 1 Length = 109

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
           +A YD++    +DL FKK +   +++  E  WW A++I +G+ G IP  YV
Sbjct: 31  VALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYV 81

>pdb|2YT6|A Chain A, Solution Structure Of The Sh3_1 Domain Of Yamaguchi Sarcoma Viral (V-Yes) Oncogene Homolog 1 Length = 109

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 389 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 438
           +A YD++    +DL FKK +   +++  E  WW A++I +G+ G IP  YV
Sbjct: 31  VALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYV 81

>pdb|1M27|C Chain C, Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX Length = 61

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
           +A YD++    DDL F K +   +++  E  WW A+++ +GE G IP  YV
Sbjct: 5   VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 55

>pdb|1M27|C Chain C, Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX Length = 61

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 389 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 438
           +A YD++    DDL F K +   +++  E  WW A+++ +GE G IP  YV
Sbjct: 5   VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 55

>pdb|2O2O|A Chain A, Solution Structure Of Domain B From Human Cin85 Protein Length = 92

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFP 255
           L+L++GDII+V      G WEG LNGKTG FP
Sbjct: 35  LELKVGDIIEVVGEVEEGWWEGVLNGKTGMFP 66

>pdb|2O2O|A Chain A, Solution Structure Of Domain B From Human Cin85 Protein Length = 92

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 499 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFP 530
           L+L++GDII+V      G WEG LNGKTG FP
Sbjct: 35  LELKVGDIIEVVGEVEEGWWEGVLNGKTGMFP 66

>pdb|1AZG|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene Tyrosine Kinase Kinase Complexed With The Synthetic Peptide P2l Corresponding To Residues 91-104 Of The P85 Subunit Of Pi3-Kinase, Minimized Average (Probmap) Structure Length = 67

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
           +A YD++    DDL F K +   +++  E  WW A+++ +GE G IP  YV
Sbjct: 7   VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 57

>pdb|1AZG|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene Tyrosine Kinase Kinase Complexed With The Synthetic Peptide P2l Corresponding To Residues 91-104 Of The P85 Subunit Of Pi3-Kinase, Minimized Average (Probmap) Structure Length = 67

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 389 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 438
           +A YD++    DDL F K +   +++  E  WW A+++ +GE G IP  YV
Sbjct: 7   VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 57

>pdb|2CRH|A Chain A, Solution Structure Of The Sh2 Domain Of Human Proto- Oncogene Protein Vav1 Length = 138

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 36/111 (32%), Positives = 51/111 (45%), Gaps = 17/111 (15%)
Query: 13  WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
           WY G M R  A++IL +  D G FLVR        + + +K N +V H    KI   E  
Sbjct: 28  WYAGPMERAGAESILANRSD-GTFLVRQRVKDAAEFAISIKYNVEVKHI---KIMTAE-- 81
Query: 73  TCYKIGD-KTFSDLPSLLAFYK-------VHYLDTS---PLIKPATKTIEK 112
             Y+I + K F  L  L+ FY+          LDT+   P  +P  +TI +
Sbjct: 82  GLYRITEKKAFRGLTELVEFYQQNSLKDCFKSLDTTLQFPFKEPEKRTISR 132

>pdb|2CRH|A Chain A, Solution Structure Of The Sh2 Domain Of Human Proto- Oncogene Protein Vav1 Length = 138

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 36/111 (32%), Positives = 51/111 (45%), Gaps = 17/111 (15%)
Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 347
           WY G M R  A++IL +  D G FLVR        + + +K N +V H    KI   E  
Sbjct: 28  WYAGPMERAGAESILANRSD-GTFLVRQRVKDAAEFAISIKYNVEVKHI---KIMTAE-- 81
Query: 348 TCYKIGD-KTFSDLPSLLAFYK-------VHYLDTS---PLIKPATKTIEK 387
             Y+I + K F  L  L+ FY+          LDT+   P  +P  +TI +
Sbjct: 82  GLYRITEKKAFRGLTELVEFYQQNSLKDCFKSLDTTLQFPFKEPEKRTISR 132

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	563
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	6e-71
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	6e-71
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	3e-66
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	2e-65
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	4e-04
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	5e-04
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	9e-60
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	1e-59
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	7e-43
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	7e-43
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	3e-42
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	4e-42
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	7e-04
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	3e-39
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	1e-33
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	2e-15
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	2e-15
3hhm_B	373	NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidil	5e-35
3hhm_B	373	NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidil	1e-16
2eo3_A	111	CRK-like protein; phosphorylation, repeat, SH2 dom	1e-32
2eo3_A	111	CRK-like protein; phosphorylation, repeat, SH2 dom	1e-32
1ju5_A	109	CRK; CRK, SH2, SH3, adaptor protein, phosphopeptid	6e-31
1ju5_A	109	CRK; CRK, SH2, SH3, adaptor protein, phosphopeptid	6e-31
2gsb_A	119	RAS GTPase-activating protein 1; GAP, RAS P21 prot	3e-28
2gsb_A	119	RAS GTPase-activating protein 1; GAP, RAS P21 prot	3e-28
1nrv_A	105	Growth factor receptor-bound protein 10; dimer, si	5e-27
1nrv_A	105	Growth factor receptor-bound protein 10; dimer, si	5e-27
3pqz_A	117	Growth factor receptor-bound protein 7; SH2, binds	1e-26
3pqz_A	117	Growth factor receptor-bound protein 7; SH2, binds	1e-26
1r1p_A	100	GRB2-related adaptor protein 2; SH2, GADS, phospho	4e-26
1r1p_A	100	GRB2-related adaptor protein 2; SH2, GADS, phospho	4e-26
2cia_A	102	Cytoplasmic protein NCK2; SH2-domain, SH3 domain,	5e-26
2cia_A	102	Cytoplasmic protein NCK2; SH2-domain, SH3 domain,	5e-26
2aug_A	126	Growth factor receptor-bound protein 14; phosphory	9e-26
2aug_A	126	Growth factor receptor-bound protein 14; phosphory	9e-26
1jyr_A	96	Growth factor receptor-bound protein 2; receptor b	3e-25
1jyr_A	96	Growth factor receptor-bound protein 2; receptor b	3e-25
2ecd_A	119	Tyrosine-protein kinase ABL2; SH2 domain, phosphot	6e-25
2ecd_A	119	Tyrosine-protein kinase ABL2; SH2 domain, phosphot	6e-25
3us4_A	98	Megakaryocyte-associated tyrosine-protein kinase;	7e-25
3us4_A	98	Megakaryocyte-associated tyrosine-protein kinase;	7e-25
2kk6_A	116	Proto-oncogene tyrosine-protein kinase FER; method	2e-24
2kk6_A	116	Proto-oncogene tyrosine-protein kinase FER; method	2e-24
2dlz_A	118	Protein VAV-2; RHO family guanine nucleotide excha	3e-24
2dlz_A	118	Protein VAV-2; RHO family guanine nucleotide excha	3e-24
1rja_A	100	Tyrosine-protein kinase 6; human protein tyrosine	3e-24
1rja_A	100	Tyrosine-protein kinase 6; human protein tyrosine	3e-24
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	4e-24
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	4e-24
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	1e-04
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	1e-04
1h9o_A	112	Phosphatidylinositol 3-kinase; transferase/recepto	5e-24
1h9o_A	112	Phosphatidylinositol 3-kinase; transferase/recepto	5e-24
3ov1_A	117	Growth factor receptor-bound protein 2; GRB2 SH2 d	7e-24
3ov1_A	117	Growth factor receptor-bound protein 2; GRB2 SH2 d	7e-24
2hdv_A	111	SH2-B PH domain containing signaling mediator 1 ga	8e-24
2hdv_A	111	SH2-B PH domain containing signaling mediator 1 ga	8e-24
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	9e-24
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	9e-24
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	1e-23
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	3e-23
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	1e-11
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	1e-11
2dly_A	121	FYN-related kinase; BRK family kinase, structural	1e-23
2dly_A	121	FYN-related kinase; BRK family kinase, structural	1e-23
1d4t_A	104	T cell signal transduction molecule SAP; SH2 domai	2e-23
1d4t_A	104	T cell signal transduction molecule SAP; SH2 domai	2e-23
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	2e-23
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	1e-22
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	3e-13
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	3e-13
3eaz_A	106	Tyrosine-protein kinase CSK; SH2, disulfide, oxidi	2e-23
3eaz_A	106	Tyrosine-protein kinase CSK; SH2, disulfide, oxidi	2e-23
2cs0_A	119	Hematopoietic SH2 domain containing; ALX, FLJ14886	2e-23
2cs0_A	119	Hematopoietic SH2 domain containing; ALX, FLJ14886	4e-23
1ka6_A	128	SH2 domain protein 1A; SH2 domain, protein-peptide	2e-23
1ka6_A	128	SH2 domain protein 1A; SH2 domain, protein-peptide	2e-23
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	3e-23
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	3e-23
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	6e-05
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	6e-05
1i3z_A	103	EWS/FLI1 activated transcript 2; SH2 domain phosph	3e-23
1i3z_A	103	EWS/FLI1 activated transcript 2; SH2 domain phosph	3e-23
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	4e-23
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	4e-23
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	1e-11
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	1e-11
3tkz_A	109	Tyrosine-protein phosphatase non-receptor type 11;	4e-23
3tkz_A	109	Tyrosine-protein phosphatase non-receptor type 11;	4e-23
1mil_A	104	SHC adaptor protein; SH2 domain, phosphorylation,	6e-23
1mil_A	104	SHC adaptor protein; SH2 domain, phosphorylation,	6e-23
2crh_A	138	VAV proto-oncogene; oncoprotein, structural genomi	7e-23
2crh_A	138	VAV proto-oncogene; oncoprotein, structural genomi	1e-22
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	1e-22
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	1e-22
2ysx_A	119	Signaling inositol polyphosphate phosphatase SHIP	1e-22
2ysx_A	119	Signaling inositol polyphosphate phosphatase SHIP	1e-22
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	2e-22
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	3e-22
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	1e-11
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	1e-11
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	4e-07
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	5e-07
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	3e-22
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	2e-18
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	2e-12
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	2e-12
3k2m_A	112	Proto-oncogene tyrosine-protein kinase ABL1; engin	5e-22
3k2m_A	112	Proto-oncogene tyrosine-protein kinase ABL1; engin	5e-22
2oq1_A	254	Tyrosine-protein kinase ZAP-70; tandem SH2 domains	5e-22
2oq1_A	254	Tyrosine-protein kinase ZAP-70; tandem SH2 domains	5e-22
2oq1_A	254	Tyrosine-protein kinase ZAP-70; tandem SH2 domains	1e-18
2oq1_A	254	Tyrosine-protein kinase ZAP-70; tandem SH2 domains	7e-18
2eob_A	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	7e-22
2eob_A	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	7e-22
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	1e-21
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	1e-21
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	8e-04
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	1e-21
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	1e-21
2c9w_A	169	Suppressor of cytokine signaling 2; growth regulat	2e-21
2c9w_A	169	Suppressor of cytokine signaling 2; growth regulat	3e-21
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	2e-21
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	2e-21
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	4e-21
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	2e-20
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	1e-11
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	1e-11
3s9k_A	118	Tyrosine-protein kinase ITK/TSK; proline isomeriza	5e-21
3s9k_A	118	Tyrosine-protein kinase ITK/TSK; proline isomeriza	5e-21
3gqi_B	226	Phospholipase C-gamma-1; phosphorylated kinase, PY	5e-21
3gqi_B	226	Phospholipase C-gamma-1; phosphorylated kinase, PY	6e-21
3gqi_B	226	Phospholipase C-gamma-1; phosphorylated kinase, PY	7e-19
3gqi_B	226	Phospholipase C-gamma-1; phosphorylated kinase, PY	7e-19
1awj_A	77	ITK; transferase, regulatory intramolecular comple	7e-21
1awj_A	77	ITK; transferase, regulatory intramolecular comple	7e-21
2dx0_A	138	Phospholipase C, gamma 2; phosphoric diester hydro	8e-21
2dx0_A	138	Phospholipase C, gamma 2; phosphoric diester hydro	8e-21
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	9e-21
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	9e-21
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	9e-21
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	9e-21
1a81_A	254	SYK kinase; complex (transferase-peptide), SYK, ki	1e-20
1a81_A	254	SYK kinase; complex (transferase-peptide), SYK, ki	1e-20
1a81_A	254	SYK kinase; complex (transferase-peptide), SYK, ki	2e-18
1a81_A	254	SYK kinase; complex (transferase-peptide), SYK, ki	4e-18
1blj_A	114	P55 BLK protein tyrosine kinase; signal transducti	2e-20
1blj_A	114	P55 BLK protein tyrosine kinase; signal transducti	2e-20
2izv_A	187	Suppressor of cytokine signaling 4; signal transdu	5e-20
2izv_A	187	Suppressor of cytokine signaling 4; signal transdu	7e-20
1aot_F	106	FYN protein-tyrosine kinase; SH2 domain, signal tr	8e-20
1aot_F	106	FYN protein-tyrosine kinase; SH2 domain, signal tr	8e-20
2ge9_A	125	Tyrosine-protein kinase BTK; SH2 domain, structure	1e-19
2ge9_A	125	Tyrosine-protein kinase BTK; SH2 domain, structure	1e-19
2dm0_A	125	Tyrosine-protein kinase TXK; TEC family kinase, st	1e-19
2dm0_A	125	Tyrosine-protein kinase TXK; TEC family kinase, st	1e-19
1lkk_A	105	Human P56 tyrosine kinase; complex (tyrosine kinas	1e-19
1lkk_A	105	Human P56 tyrosine kinase; complex (tyrosine kinas	1e-19
2ekx_A	110	Cytoplasmic tyrosine-protein kinase BMX; SH2 domai	2e-19
2ekx_A	110	Cytoplasmic tyrosine-protein kinase BMX; SH2 domai	2e-19
1wqu_A	114	C-FES, proto-oncogene tyrosine-protein kinase FES/	2e-19
1wqu_A	114	C-FES, proto-oncogene tyrosine-protein kinase FES/	2e-19
2hmh_A	152	Suppressor of cytokine signaling 3; SOCS3, GP130,	3e-19
2hmh_A	152	Suppressor of cytokine signaling 3; SOCS3, GP130,	2e-18
2bbu_A	164	Suppressor of cytokine signaling 3; SH2 domain, ex	3e-19
2bbu_A	164	Suppressor of cytokine signaling 3; SH2 domain, ex	6e-19
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	5e-19
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	8e-16
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	3e-12
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	3e-12
2y3a_B	302	Phosphatidylinositol 3-kinase regulatory subunit;	5e-19
2y3a_B	302	Phosphatidylinositol 3-kinase regulatory subunit;	9e-19
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	1e-18
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	1e-18
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	1e-18
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	1e-18
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	3e-09
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	1e-08
2iug_A	120	Phosphatidylinositol 3-kinase regulatory alpha sub	1e-18
2iug_A	120	Phosphatidylinositol 3-kinase regulatory alpha sub	1e-18
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	2e-18
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	2e-18
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	2e-18
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	7e-17
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	1e-10
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	1e-10
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	2e-18
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	2e-18
2eo6_A	141	B-cell linker protein; SH2, cytoplasmic adapter pr	3e-18
2eo6_A	141	B-cell linker protein; SH2, cytoplasmic adapter pr	3e-18
2vif_A	141	Suppressor of cytokine signalling 6; growth regula	6e-18
2vif_A	141	Suppressor of cytokine signalling 6; growth regula	6e-18
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	6e-18
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	6e-18
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	1e-14
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	1e-14
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	7e-18
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	7e-18
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	9e-18
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	9e-18
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	1e-17
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	1e-17
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	1e-17
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	1e-17
1wxb_A	68	Epidermal growth factor receptor pathway substrate	2e-17
1wxb_A	68	Epidermal growth factor receptor pathway substrate	2e-17
1wxb_A	68	Epidermal growth factor receptor pathway substrate	7e-04
1wxb_A	68	Epidermal growth factor receptor pathway substrate	7e-04
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	2e-17
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	2e-17
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	2e-07
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	3e-17
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	3e-17
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	3e-17
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	3e-17
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	4e-17
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	4e-17
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	4e-17
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	4e-17
1i07_A	60	Epidermal growth factor receptor kinase substrate	8e-17
1i07_A	60	Epidermal growth factor receptor kinase substrate	8e-17
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	1e-16
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	1e-16
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	8e-09
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	2e-07
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	1e-16
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	1e-16
2kno_A	131	Tensin-like C1 domain-containing phosphatase; SH2	1e-16
2kno_A	131	Tensin-like C1 domain-containing phosphatase; SH2	1e-16
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	1e-16
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	1e-16
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	2e-06
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	2e-06
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	2e-16
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	2e-16
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	1e-07
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	4e-07
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	2e-16
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	2e-16
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	2e-07
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	6e-07
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	3e-16
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	3e-16
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	2e-04
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	2e-04
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	3e-16
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	1e-14
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	4e-10
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	4e-10
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	3e-16
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	3e-16
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	4e-16
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	4e-16
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	6e-07
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	6e-07
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	4e-16
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	4e-16
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	4e-06
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	3e-05
3maz_A	125	Signal-transducing adaptor protein 1; modular doma	7e-16
3maz_A	125	Signal-transducing adaptor protein 1; modular doma	7e-16
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	7e-16
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	7e-16
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	8e-16
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	8e-16
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	3e-08
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	3e-08
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	9e-16
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	9e-16
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	9e-16
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	9e-16
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	1e-15
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	1e-15
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	2e-08
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	7e-08
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	1e-15
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	1e-15
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	2e-06
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	2e-06
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	1e-15
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	1e-15
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	1e-15
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	1e-15
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	1e-15
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	1e-15
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	8e-04
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	1e-15
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	1e-15
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	1e-04
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	1e-04
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	2e-15
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	2e-15
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	2e-15
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	2e-15
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	7e-08
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	4e-07
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	2e-15
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	2e-15
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	2e-04
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	2e-04
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	2e-15
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	2e-15
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	2e-07
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	2e-07
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	2e-15
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	2e-15
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	2e-08
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	2e-08
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	2e-15
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	2e-15
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	1e-07
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	1e-07
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	2e-15
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	2e-15
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	6e-07
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	3e-06
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	3e-15
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	3e-15
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	2e-07
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	2e-07
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	3e-15
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	3e-15
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	1e-07
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	1e-07
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	3e-15
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	3e-15
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	2e-07
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	2e-07
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	4e-15
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	4e-15
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	4e-15
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	4e-15
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	5e-05
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	1e-04
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	4e-15
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	4e-15
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	4e-15
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	4e-15
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	4e-07
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	8e-07
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	4e-15
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	4e-15
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	1e-07
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	1e-07
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	5e-15
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	5e-15
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	5e-15
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	5e-15
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	6e-08
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	3e-07
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	6e-15
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	6e-15
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	8e-04
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	8e-04
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	7e-15
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	1e-13
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	6e-12
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	6e-12
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	7e-15
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	7e-15
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	7e-08
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	7e-08
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	7e-15
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	7e-15
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	2e-07
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	2e-07
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	7e-15
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	7e-15
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	2e-08
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	2e-08
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	7e-15
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	7e-15
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	8e-15
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	8e-15
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	3e-08
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	3e-08
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	8e-15
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	8e-15
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	6e-04
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	6e-04
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	8e-15
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	8e-15
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	2e-07
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	4e-07
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	8e-15
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	8e-15
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	2e-04
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	2e-04
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	9e-15
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	9e-15
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	1e-06
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	1e-06
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens} Length	9e-15
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens} Length	9e-15
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens} Length	4e-10
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens} Length	6e-10
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	1e-14
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	1e-14
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	1e-14
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	4e-12
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	1e-08
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	1e-08
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	1e-14
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	1e-14
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	1e-06
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	1e-06
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	2e-14
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	2e-14
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	4e-08
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	5e-08
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	2e-14
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	2e-14
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	1e-07
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	1e-07
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	2e-14
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	2e-14
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	9e-09
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	9e-09
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	2e-14
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	2e-14
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	9e-09
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	9e-09
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	2e-14
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	2e-14
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	4e-06
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	4e-06
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	2e-14
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	2e-14
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	7e-05
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	7e-05
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	3e-14
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	3e-14
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	8e-09
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	8e-09
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	3e-14
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	3e-14
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	5e-07
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	5e-07
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	3e-14
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	3e-14
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	1e-08
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	1e-08
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	3e-14
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	3e-14
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	4e-14
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	4e-14
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	1e-08
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	1e-08
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	4e-14
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	4e-14
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	1e-07
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	1e-07
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	5e-14
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	5e-14
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	7e-04
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	7e-04
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	7e-14
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	7e-14
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	1e-04
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	6e-04
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	8e-14
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	8e-14
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	3e-08
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	7e-08
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	9e-14
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	9e-14
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	7e-08
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	7e-08
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	1e-13
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	1e-13
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	4e-10
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	4e-10
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	1e-13
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	1e-13
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	1e-13
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	1e-13
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	2e-06
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	2e-06
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	2e-13
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	2e-13
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	9e-09
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	1e-08
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	2e-13
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	2e-13
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	5e-10
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	2e-09
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	2e-13
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	2e-13
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	3e-05
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	3e-05
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	2e-13
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	2e-13
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	8e-11
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	1e-09
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	2e-13
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	2e-13
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	9e-08
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	3e-07
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	2e-13
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	2e-13
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	9e-09
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	9e-09
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	3e-13
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	3e-13
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	8e-11
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	8e-11
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	3e-13
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	3e-13
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	9e-05
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	9e-05
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	3e-13
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	3e-13
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	6e-08
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	6e-08
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	3e-13
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	3e-13
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	3e-08
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	1e-07
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	3e-13
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	3e-13
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	3e-08
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	3e-08
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	4e-13
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	4e-13
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	3e-05
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	3e-05
3u23_A	65	CD2-associated protein; structural genomics, struc	4e-13
3u23_A	65	CD2-associated protein; structural genomics, struc	4e-13
3u23_A	65	CD2-associated protein; structural genomics, struc	8e-10
3u23_A	65	CD2-associated protein; structural genomics, struc	8e-10
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	5e-13
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	5e-13
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	2e-07
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	2e-07
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	5e-13
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	5e-13
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	7e-13
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	7e-13
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	3e-08
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	3e-08
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	7e-13
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	7e-13
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	3e-07
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	3e-07
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	8e-13
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	8e-13
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	8e-04
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	8e-04
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	8e-13
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	8e-13
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	3e-10
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	3e-09
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	8e-13
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	8e-13
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	1e-06
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	1e-06
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	9e-13
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	9e-13
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	9e-08
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	9e-08
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	9e-13
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	9e-13
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	3e-09
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	3e-09
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	9e-13
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	9e-13
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	1e-04
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	6e-04
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	1e-12
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	1e-12
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	2e-04
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	2e-04
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	1e-12
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	1e-12
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	1e-07
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	9e-07
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	1e-12
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	1e-12
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	7e-07
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	3e-06
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	1e-12
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	1e-12
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	6e-06
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	2e-05
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	2e-12
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	5e-12
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	5e-06
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	2e-12
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	2e-12
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	2e-12
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	2e-12
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	1e-07
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	2e-07
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	2e-12
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	2e-12
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	2e-08
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	6e-08
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	2e-12
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	2e-12
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	1e-08
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	8e-08
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	3e-12
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	3e-12
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	2e-08
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	2e-08
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	3e-12
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	3e-12
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	3e-07
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	3e-07
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	4e-12
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	4e-12
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	1e-08
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	3e-08
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	4e-12
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	4e-12
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	2e-07
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	2e-07
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	5e-12
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	5e-12
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	4e-05
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	2e-04
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	6e-12
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	6e-12
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	2e-06
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	3e-06
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	7e-12
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	7e-12
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	5e-07
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	5e-07
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	8e-12
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	8e-12
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	8e-05
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	8e-05
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	8e-12
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	8e-12
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	9e-04
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	9e-04
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	9e-12
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	9e-12
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	9e-12
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	9e-12
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	3e-07
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	3e-07
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	1e-11
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	1e-11
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	7e-07
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	7e-07
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	1e-11
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	1e-11
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	8e-09
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	1e-08
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	2e-11
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	2e-11
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	2e-07
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	5e-07
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	3e-11
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	3e-11
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	8e-11
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	8e-11
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	3e-11
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	3e-11
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	6e-11
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	6e-11
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	6e-11
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	6e-11
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	7e-11
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	7e-11
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	2e-06
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	2e-06
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	7e-11
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	7e-11
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	1e-06
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	1e-06
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	8e-11
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	8e-11
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	1e-06
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	2e-06
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	1e-10
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	1e-10
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	6e-06
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	6e-06
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	3e-10
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	3e-10
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	3e-08
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	9e-08
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	3e-10
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	3e-10
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	1e-05
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	1e-05
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	4e-10
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	4e-10
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	2e-08
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	2e-08
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	4e-10
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	4e-10
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	5e-07
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	5e-07
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	8e-10
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	8e-10
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	3e-05
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	3e-05
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	9e-10
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	9e-10
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	1e-09
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	1e-09
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	3e-06
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	3e-06
2shp_A	525	SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin	1e-09
2shp_A	525	SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin	1e-09
2shp_A	525	SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin	8e-05
2shp_A	525	SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin	8e-05
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	1e-09
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	1e-09
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	5e-07
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	5e-07
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	2e-09
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	2e-09
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	3e-07
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	1e-06
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	2e-09
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	2e-09
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	4e-08
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	4e-08
2b3o_A	532	Tyrosine-protein phosphatase, non-receptor type 6;	3e-09
2b3o_A	532	Tyrosine-protein phosphatase, non-receptor type 6;	3e-09
3ps5_A	595	Tyrosine-protein phosphatase non-receptor type 6;	4e-09
3ps5_A	595	Tyrosine-protein phosphatase non-receptor type 6;	4e-09
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	4e-09
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	4e-09
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	7e-09
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	2e-08
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	1e-08
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	1e-08
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	3e-05
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	3e-05
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	2e-08
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	2e-08
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	1e-04
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	2e-04
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	3e-08
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	3e-08
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	1e-07
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	3e-06
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	4e-08
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	4e-08
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	9e-08
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	9e-08
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	8e-06
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	8e-06
2cr4_A	126	3BP-2, SH3 domain-binding protein 2; structural ge	2e-07
2cr4_A	126	3BP-2, SH3 domain-binding protein 2; structural ge	2e-07
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	2e-07
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	2e-07
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	9e-06
2el8_A	118	Signal-transducing adaptor protein 2; SH2 domain,	4e-07
2el8_A	118	Signal-transducing adaptor protein 2; SH2 domain,	4e-07
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	4e-07
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	4e-07
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	5e-07
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	5e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-07
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	1e-06
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	1e-06
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	2e-05
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	2e-05
2gtj_A	96	FYN-binding protein; SH3, redox, signaling protein	4e-06
2gtj_A	96	FYN-binding protein; SH3, redox, signaling protein	4e-06
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	4e-06
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	4e-06
1ug1_A	92	KIAA1010 protein; structural genomics, SH3 domain,	5e-06
1ug1_A	92	KIAA1010 protein; structural genomics, SH3 domain,	5e-06
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	1e-05
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	1e-05
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	1e-05
1uur_A	473	Stata protein, STAT protein; transcription activat	2e-05
1uur_A	473	Stata protein, STAT protein; transcription activat	2e-04
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	3e-05
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	3e-05
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	3e-05
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	3e-05
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	2e-04
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	2e-04
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	4e-04
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	4e-04
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	7e-04
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	7e-04
3or8_A	197	Transcription elongation factor SPT6; SH2, CTD bin	8e-04
3or8_A	197	Transcription elongation factor SPT6; SH2, CTD bin	8e-04

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score =  229 bits (584), Expect = 6e-71
 Identities = 91/279 (32%), Positives = 142/279 (50%), Gaps = 14/279 (5%)

Query: 1   MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCVK---ENN 56
            T  FDP +  S+YF  M+R+EA  +L   + + G FL+RDS +  G Y L V+   E N
Sbjct: 31  TTNGFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDS-SRPGEYSLTVREADEGN 89

Query: 57  KVSHYIINKITNTEQ---QTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPA-TKTIEK 112
            V HY+I +    E        KI +++F D+P+LL  +K+  L  + L+       IE 
Sbjct: 90  AVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEV 149

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSI 172
           V+  + F G    DLPF++ + L ++SK  + WW A+N  G  G +P  YVQ   E  + 
Sbjct: 150 VVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQIQMEFHND 209

Query: 173 LSLRN-----LHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLE 227
            + +      +             +T      L+ +LPA A+V   RVPNAYD T L+++
Sbjct: 210 RTSKGASQSSIGSSGGGAERFSSASTSSDNIELQPRLPAKAKVTFDRVPNAYDPTQLRVK 269

Query: 228 IGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNE 266
            G  + VT+   NG ++ EL+G+ G  P T++ F   +E
Sbjct: 270 KGQTVLVTQKMSNGMYKAELDGQIGSVPHTYLRFTAVSE 308

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score =  229 bits (584), Expect = 6e-71
 Identities = 91/279 (32%), Positives = 142/279 (50%), Gaps = 14/279 (5%)

Query: 276 MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCVK---ENN 331
            T  FDP +  S+YF  M+R+EA  +L   + + G FL+RDS +  G Y L V+   E N
Sbjct: 31  TTNGFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDS-SRPGEYSLTVREADEGN 89

Query: 332 KVSHYIINKITNTEQ---QTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPA-TKTIEK 387
            V HY+I +    E        KI +++F D+P+LL  +K+  L  + L+       IE 
Sbjct: 90  AVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEV 149

Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSI 447
           V+  + F G    DLPF++ + L ++SK  + WW A+N  G  G +P  YVQ   E  + 
Sbjct: 150 VVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQIQMEFHND 209

Query: 448 LSLRN-----LHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLE 502
            + +      +             +T      L+ +LPA A+V   RVPNAYD T L+++
Sbjct: 210 RTSKGASQSSIGSSGGGAERFSSASTSSDNIELQPRLPAKAKVTFDRVPNAYDPTQLRVK 269

Query: 503 IGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNE 541
            G  + VT+   NG ++ EL+G+ G  P T++ F   +E
Sbjct: 270 KGQTVLVTQKMSNGMYKAELDGQIGSVPHTYLRFTAVSE 308

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score =  216 bits (551), Expect = 3e-66
 Identities = 135/305 (44%), Positives = 177/305 (58%), Gaps = 34/305 (11%)

Query: 276 MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 335
           M G FD  +R+SWY+G ++RQEA A+L  ++  G FLVRDS+T  G+YVL V EN++VSH
Sbjct: 1   MAGNFDSEERSSWYWGRLSRQEAVALLQGQRH-GVFLVRDSSTSPGDYVLSVSENSRVSH 59

Query: 336 YIINKI-------------TNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPAT 382
           YIIN                     +  +IGD+ F  LP+LL FYK+HYLDT+ LI+P +
Sbjct: 60  YIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVS 119

Query: 383 KTI------------EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEV 430
           ++             E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ 
Sbjct: 120 RSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKR 179

Query: 431 GSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTP--------VRKTHLEVKLPAF 482
           G IPVPYV+KY    + +S         SH  P     P                  P +
Sbjct: 180 GMIPVPYVEKYRPASASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIY 239

Query: 483 ARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET 542
           ARV Q RVPNAYDKTAL LE+G+++KVTK N++GQWEGE NGK GHFPFTHV  +     
Sbjct: 240 ARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQQNP 299

Query: 543 SVETN 547
             + +
Sbjct: 300 EEDFS 304

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score =  214 bits (546), Expect = 2e-65
 Identities = 135/300 (45%), Positives = 175/300 (58%), Gaps = 34/300 (11%)

Query: 1   MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
           M G FD  +R+SWY+G ++RQEA A+L  ++  G FLVRDS+T  G+YVL V EN++VSH
Sbjct: 1   MAGNFDSEERSSWYWGRLSRQEAVALLQGQRH-GVFLVRDSSTSPGDYVLSVSENSRVSH 59

Query: 61  YIINKI-------------TNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPAT 107
           YIIN                     +  +IGD+ F  LP+LL FYK+HYLDT+ LI+P +
Sbjct: 60  YIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVS 119

Query: 108 KTI------------EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEV 155
           ++             E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ 
Sbjct: 120 RSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKR 179

Query: 156 GSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTP--------VRKTHLEVKLPAF 207
           G IPVPYV+KY    + +S         SH  P     P                  P +
Sbjct: 180 GMIPVPYVEKYRPASASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIY 239

Query: 208 ARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET 267
           ARV Q RVPNAYDKTAL LE+G+++KVTK N++GQWEGE NGK GHFPFTHV  +     
Sbjct: 240 ARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQQNP 299

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score = 41.5 bits (96), Expect = 4e-04
 Identities = 29/175 (16%), Positives = 46/175 (26%), Gaps = 8/175 (4%)

Query: 397 NDPDD--LPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLH 454
             P D  L   +N  +     +          S       V   +         SL  L 
Sbjct: 42  TSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALL 101

Query: 455 LDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTA-----LKLEIGDIIKV 509
                H++             +       + +   V   +D        L  + GDI+++
Sbjct: 102 EFYKIHYLDTTTLIEPVSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRI 161

Query: 510 TKTNINGQWEGE-LNGKTGHFPFTHVEFIPTNETSVETNGNGDIHNSTPKTETPT 563
                   W  E   GK G  P  +VE       SV     G+   S P+     
Sbjct: 162 RDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASASVSALIGGNQEGSHPQPLGGP 216

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score = 41.1 bits (95), Expect = 5e-04
 Identities = 27/198 (13%), Positives = 47/198 (23%), Gaps = 8/198 (4%)

Query: 122 NDPDD--LPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLH 179
             P D  L   +N  +     +          S       V   +         SL  L 
Sbjct: 42  TSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALL 101

Query: 180 LDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTA-----LKLEIGDIIKV 234
                H++             +       + +   V   +D        L  + GDI+++
Sbjct: 102 EFYKIHYLDTTTLIEPVSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRI 161

Query: 235 TKTNINGQWEGE-LNGKTGHFPFTHVEFIPTNETMPFHSSMKMTGTFDPHDRNSWYFGMM 293
                   W  E   GK G  P  +VE                     P        G  
Sbjct: 162 RDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASASVSALIGGNQEGSHPQPLGGPEPGPY 221

Query: 294 TRQEAQAILLSEKDNGAF 311
            +      L + ++   +
Sbjct: 222 AQPSVNTPLPNLQNGPIY 239

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Length = 303

 Score =  199 bits (507), Expect = 9e-60
 Identities = 133/303 (43%), Positives = 171/303 (56%), Gaps = 41/303 (13%)

Query: 277 TGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 336
           +  FD  DR++WY G ++RQEAQ  L  ++  G FLVRDS+T  G+YVL V EN++VSHY
Sbjct: 3   SARFDSSDRSAWYMGPVSRQEAQTRLQGQRH-GMFLVRDSSTCPGDYVLSVSENSRVSHY 61

Query: 337 IINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKT------------ 384
           IIN + N      +KIGD+ F  LP+LL FYK+HYLDT+ LI+PA +             
Sbjct: 62  IINSLPNRR----FKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAPRYPSPPMGSVSAPN 117

Query: 385 -------IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPY 437
                  +E V   YDF GND +DLPFKK +IL+++ K EE WW+A+N  G VG IPVPY
Sbjct: 118 LPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPY 177

Query: 438 VQKYSEGMSILSLRNLHLDSS-----------------SHHVPQQQTTPVRKTHLEVKLP 480
           V+K           N + +S                     V       +         P
Sbjct: 178 VEKLVRSSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGP 237

Query: 481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN 540
            FA+  Q RVP AYDKTAL LE+GDI+KVT+ NINGQWEGE+NG+ G FPFTHV+     
Sbjct: 238 VFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQ 297

Query: 541 ETS 543
              
Sbjct: 298 NPD 300

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Length = 303

 Score =  199 bits (506), Expect = 1e-59
 Identities = 133/301 (44%), Positives = 171/301 (56%), Gaps = 41/301 (13%)

Query: 2   TGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 61
           +  FD  DR++WY G ++RQEAQ  L  ++  G FLVRDS+T  G+YVL V EN++VSHY
Sbjct: 3   SARFDSSDRSAWYMGPVSRQEAQTRLQGQRH-GMFLVRDSSTCPGDYVLSVSENSRVSHY 61

Query: 62  IINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKT------------ 109
           IIN + N      +KIGD+ F  LP+LL FYK+HYLDT+ LI+PA +             
Sbjct: 62  IINSLPNRR----FKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAPRYPSPPMGSVSAPN 117

Query: 110 -------IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPY 162
                  +E V   YDF GND +DLPFKK +IL+++ K EE WW+A+N  G VG IPVPY
Sbjct: 118 LPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPY 177

Query: 163 VQKYSEGMSILSLRNLHLDSS-----------------SHHVPQQQTTPVRKTHLEVKLP 205
           V+K           N + +S                     V       +         P
Sbjct: 178 VEKLVRSSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGP 237

Query: 206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN 265
            FA+  Q RVP AYDKTAL LE+GDI+KVT+ NINGQWEGE+NG+ G FPFTHV+     
Sbjct: 238 VFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQ 297

Query: 266 E 266
            
Sbjct: 298 N 298

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans} Length = 174

 Score =  150 bits (379), Expect = 7e-43
 Identities = 61/169 (36%), Positives = 91/169 (53%), Gaps = 9/169 (5%)

Query: 4   TFDPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK---ENNKVS 59
            FDP +  S+YF  M+R+EA  +L   +   G FL+RDS+   G Y L V+   E N V 
Sbjct: 5   GFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDSSRP-GEYSLTVREADEGNAVC 63

Query: 60  HYIINKITNTEQQTC---YKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIE-KVIA 115
           HY+I +    E  T     KI +++F D+P+LL  +K+  L  + L+    K I   V+ 
Sbjct: 64  HYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVVVG 123

Query: 116 KYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
            + F G    DLPF++ + L ++SK  + WW A+N  G  G +P  YVQ
Sbjct: 124 TFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQ 172

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans} Length = 174

 Score =  150 bits (379), Expect = 7e-43
 Identities = 61/169 (36%), Positives = 91/169 (53%), Gaps = 9/169 (5%)

Query: 279 TFDPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK---ENNKVS 334
            FDP +  S+YF  M+R+EA  +L   +   G FL+RDS+   G Y L V+   E N V 
Sbjct: 5   GFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDSSRP-GEYSLTVREADEGNAVC 63

Query: 335 HYIINKITNTEQQTC---YKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIE-KVIA 390
           HY+I +    E  T     KI +++F D+P+LL  +K+  L  + L+    K I   V+ 
Sbjct: 64  HYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVVVG 123

Query: 391 KYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
            + F G    DLPF++ + L ++SK  + WW A+N  G  G +P  YVQ
Sbjct: 124 TFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQ 172

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A Length = 230

 Score =  150 bits (379), Expect = 3e-42
 Identities = 93/234 (39%), Positives = 124/234 (52%), Gaps = 40/234 (17%)

Query: 261 FIPTNETMPFHSSMKMTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTIL 320
            +  N              FD  +R+SWY+G ++RQEA A+L  ++  G FLVRDS+T  
Sbjct: 2   AMAGN--------------FDSEERSSWYWGRLSRQEAVALLQGQRH-GVFLVRDSSTSP 46

Query: 321 GNYVLCVKENNKVSHYIINKITNTEQ-------------QTCYKIGDKTFSDLPSLLAFY 367
           G+YVL V EN++VSHYIIN                     +  +IGD+ F  LP+LL FY
Sbjct: 47  GDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFY 106

Query: 368 KVHYLDTSPLIKPA------------TKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSK 415
           K+HYLDT+ LI+P              +  E V A +DF+GND +DLPFKK DIL +  K
Sbjct: 107 KIHYLDTTTLIEPVSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDK 166

Query: 416 DEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTP 469
            EE WW A++  G+ G IPVPYV+KY    + +S         SH  P     P
Sbjct: 167 PEEQWWNAEDSEGKRGMIPVPYVEKYRPASASVSALIGGNQEGSHPQPLGGPEP 220

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A Length = 230

 Score =  150 bits (379), Expect = 4e-42
 Identities = 92/216 (42%), Positives = 122/216 (56%), Gaps = 26/216 (12%)

Query: 4   TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
            FD  +R+SWY+G ++RQEA A+L  ++  G FLVRDS+T  G+YVL V EN++VSHYII
Sbjct: 6   NFDSEERSSWYWGRLSRQEAVALLQGQRH-GVFLVRDSSTSPGDYVLSVSENSRVSHYII 64

Query: 64  NKITNTEQ-------------QTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPA---- 106
           N                     +  +IGD+ F  LP+LL FYK+HYLDT+ LI+P     
Sbjct: 65  NSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSRSR 124

Query: 107 --------TKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSI 158
                    +  E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ G I
Sbjct: 125 QGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMI 184

Query: 159 PVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTP 194
           PVPYV+KY    + +S         SH  P     P
Sbjct: 185 PVPYVEKYRPASASVSALIGGNQEGSHPQPLGGPEP 220

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A Length = 230

 Score = 40.3 bits (93), Expect = 7e-04
 Identities = 23/129 (17%), Positives = 36/129 (27%), Gaps = 6/129 (4%)

Query: 441 YSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTA-- 498
                   SL  L      H++             +       + +   V   +D     
Sbjct: 90  RIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSRSRQGSGVILRQEEAEYVRALFDFNGND 149

Query: 499 ---LKLEIGDIIKVTKTNINGQWEGE-LNGKTGHFPFTHVEFIPTNETSVETNGNGDIHN 554
              L  + GDI+++        W  E   GK G  P  +VE       SV     G+   
Sbjct: 150 EEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASASVSALIGGNQEG 209

Query: 555 STPKTETPT 563
           S P+     
Sbjct: 210 SHPQPLGGP 218

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score =  141 bits (357), Expect = 3e-39
 Identities = 57/238 (23%), Positives = 101/238 (42%), Gaps = 38/238 (15%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQW-EGELNGKTGHFPFTHVEFIPTNETMPFHS 272
           YD  A     L  + GDI+KV     +  W + ELNGK G  P                 
Sbjct: 7   YDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIP----------------- 49

Query: 273 SMKMTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNK 332
                  +     + W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N 
Sbjct: 50  -----KNYIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGND 104

Query: 333 VSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLD-----TSPLIKPATKTIEK 387
           V H+ + +    +    Y +    F+ L  L+ +++   +          I+   +    
Sbjct: 105 VQHFKVLR----DGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTY 160

Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM 445
           V A +DFD  +  +L F++ D + V+   + +WW      G+ G  P  YV   +  +
Sbjct: 161 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGAC-HGQTGMFPRNYVTPVNRNV 217

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score =  126 bits (317), Expect = 1e-33
 Identities = 40/171 (23%), Positives = 80/171 (46%), Gaps = 10/171 (5%)

Query: 5   FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 64
           +     + W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+ + 
Sbjct: 52  YIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVL 111

Query: 65  KITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLD-----TSPLIKPATKTIEKVIAKYDF 119
           +    +    Y +    F+ L  L+ +++   +          I+   +    V A +DF
Sbjct: 112 R----DGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDF 167

Query: 120 DGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM 170
           D  +  +L F++ D + V+   + +WW      G+ G  P  YV   +  +
Sbjct: 168 DPQEDGELGFRRGDFIHVMDNSDPNWWKGAC-HGQTGMFPRNYVTPVNRNV 217

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 74.7 bits (183), Expect = 2e-15
 Identities = 20/57 (35%), Positives = 33/57 (57%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
           + IAKYDF     D+L FK+ DIL V++++ +  W    ++G+ G IP  Y++    
Sbjct: 2   EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPH 58

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 74.7 bits (183), Expect = 2e-15
 Identities = 20/57 (35%), Positives = 33/57 (57%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 443
           + IAKYDF     D+L FK+ DIL V++++ +  W    ++G+ G IP  Y++    
Sbjct: 2   EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPH 58

>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A Length = 373

 Score =  134 bits (338), Expect = 5e-35
 Identities = 73/384 (19%), Positives = 130/384 (33%), Gaps = 37/384 (9%)

Query: 4   TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTIL-GNYVLCVKENNKVSHYI 62
                    WY+G ++R+E    L    D G FLVRD++T + G+Y L +++        
Sbjct: 3   NNMSLQNAEWYWGDISREEVNEKLRDTAD-GTFLVRDASTKMHGDYTLTLRKGGNNKLIK 61

Query: 63  INKITNTEQQTCYKIGDK-TFSDLPSLLAFYKVHYLDTS------PLIKPATKTIEKVIA 115
           I           Y   D  TFS +  L+  Y+   L          L+ P +K  +  + 
Sbjct: 62  IFHRDGK-----YGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQDQVV 116

Query: 116 KYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSL 175
           K D        L            + +  +      S E+  +    ++ ++E + I   
Sbjct: 117 KEDNIEAVGKKLHEYNTQFQEKSREYDRLYEEYTRTSQEI-QMKRTAIEAFNETIKIF-E 174

Query: 176 RNLHLDSSSHHVPQQQTTPVRKTHLEVKLP-----AFARVKQVRVPNAYDKTALKLEIGD 230
                         ++           ++        +R+ ++       +  LK +  +
Sbjct: 175 EQCQTQERYSKEYIEKFKREGNEKEIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAE 234

Query: 231 IIKVTKTNINGQWEGELNGKT----------GHFPFTHVEFIPTNETMPFHSSMKMTGTF 280
             ++ K   + + +     KT                 +     NE      S+      
Sbjct: 235 YREIDKRMNSIKPDLIQLRKTRDQYLMWLTQKGVRQKKLNEWLGNENTEDQYSLVEDDED 294

Query: 281 DPH-DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 339
            PH D  +W  G   R +A+  LL  K +G FLVR+S+   G Y   V  + +V H +IN
Sbjct: 295 LPHHDEKTWNVGSSNRNKAEN-LLRGKRDGTFLVRESSKQ-GCYACSVVVDGEVKHCVIN 352

Query: 340 KITNTEQQTCYKIGDKTFSDLPSL 363
           K   T     +      +S L  L
Sbjct: 353 K---TATGYGFAEPYNLYSSLKEL 373

>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A Length = 373

 Score = 80.6 bits (198), Expect = 1e-16
 Identities = 32/132 (24%), Positives = 50/132 (37%), Gaps = 14/132 (10%)

Query: 279 TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTIL-GNYVLCVKENNKVSHYI 337
                    WY+G ++R+E    L    D G FLVRD++T + G+Y L +++        
Sbjct: 3   NNMSLQNAEWYWGDISREEVNEKLRDTAD-GTFLVRDASTKMHGDYTLTLRKGGNNKLIK 61

Query: 338 INKITNTEQQTCYKIGDK-TFSDLPSLLAFYKVHYLDTS------PLIKPATKTIEKVIA 390
           I           Y   D  TFS +  L+  Y+   L          L+ P +K  +  + 
Sbjct: 62  IFHRDGK-----YGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQDQVV 116

Query: 391 KYDFDGNDPDDL 402
           K D        L
Sbjct: 117 KEDNIEAVGKKL 128

>2eo3_A CRK-like protein; phosphorylation, repeat, SH2 domain, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 111

 Score =  120 bits (302), Expect = 1e-32
 Identities = 57/104 (54%), Positives = 75/104 (72%), Gaps = 5/104 (4%)

Query: 5   FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 64
           FD  DR++WY G ++RQEAQ  L  ++  G FLVRDS+T  G+YVL V EN++VSHYIIN
Sbjct: 13  FDSSDRSAWYMGPVSRQEAQTRLQGQRH-GMFLVRDSSTCPGDYVLSVSENSRVSHYIIN 71

Query: 65  KITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK 108
            + N      +KIGD+ F  LP+LL FYK+HYLDT+ LI+PA +
Sbjct: 72  SLPNRR----FKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAPR 111

>2eo3_A CRK-like protein; phosphorylation, repeat, SH2 domain, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 111

 Score =  120 bits (302), Expect = 1e-32
 Identities = 57/104 (54%), Positives = 75/104 (72%), Gaps = 5/104 (4%)

Query: 280 FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 339
           FD  DR++WY G ++RQEAQ  L  ++  G FLVRDS+T  G+YVL V EN++VSHYIIN
Sbjct: 13  FDSSDRSAWYMGPVSRQEAQTRLQGQRH-GMFLVRDSSTCPGDYVLSVSENSRVSHYIIN 71

Query: 340 KITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK 383
            + N      +KIGD+ F  LP+LL FYK+HYLDT+ LI+PA +
Sbjct: 72  SLPNRR----FKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAPR 111

>1ju5_A CRK; CRK, SH2, SH3, adaptor protein, phosphopeptide, protein binding/transferase complex; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 Length = 109

 Score =  115 bits (289), Expect = 6e-31
 Identities = 51/110 (46%), Positives = 70/110 (63%), Gaps = 14/110 (12%)

Query: 12  SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK------ 65
           SWY+G ++RQEA A+L  ++  G FLVRDS+T  G+YVL V EN++VSHYIIN       
Sbjct: 1   SWYWGRLSRQEAVALLQGQRH-GVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPP 59

Query: 66  -------ITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK 108
                         +  +IGD+ F  LP+LL FYK+HYLDT+ LI+P ++
Sbjct: 60  VPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSR 109

>1ju5_A CRK; CRK, SH2, SH3, adaptor protein, phosphopeptide, protein binding/transferase complex; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 Length = 109

 Score =  115 bits (289), Expect = 6e-31
 Identities = 51/110 (46%), Positives = 70/110 (63%), Gaps = 14/110 (12%)

Query: 287 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK------ 340
           SWY+G ++RQEA A+L  ++  G FLVRDS+T  G+YVL V EN++VSHYIIN       
Sbjct: 1   SWYWGRLSRQEAVALLQGQRH-GVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPP 59

Query: 341 -------ITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK 383
                         +  +IGD+ F  LP+LL FYK+HYLDT+ LI+P ++
Sbjct: 60  VPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSR 109

>2gsb_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score =  108 bits (271), Expect = 3e-28
 Identities = 24/104 (23%), Positives = 51/104 (49%), Gaps = 5/104 (4%)

Query: 6   DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
           DPH+   W+ G +++QEA  +L++     +FLVR S+   G+Y L  + N  +  + I  
Sbjct: 11  DPHEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQRFKICP 70

Query: 66  ITNTEQQTCYKIGDKTFSDLPSLLAFYKVH-YLDTSPLIKPATK 108
             N +    + +G + ++ +  ++  Y+    ++   L +P   
Sbjct: 71  TPNNQ----FMMGGRYYNSIGDIIDHYRKEQIVEGYYLKEPVPM 110

>2gsb_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score =  108 bits (271), Expect = 3e-28
 Identities = 24/104 (23%), Positives = 51/104 (49%), Gaps = 5/104 (4%)

Query: 281 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 340
           DPH+   W+ G +++QEA  +L++     +FLVR S+   G+Y L  + N  +  + I  
Sbjct: 11  DPHEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQRFKICP 70

Query: 341 ITNTEQQTCYKIGDKTFSDLPSLLAFYKVH-YLDTSPLIKPATK 383
             N +    + +G + ++ +  ++  Y+    ++   L +P   
Sbjct: 71  TPNNQ----FMMGGRYYNSIGDIIDHYRKEQIVEGYYLKEPVPM 110

>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling protein; 1.65A {Homo sapiens} SCOP: d.93.1.1 PDB: 3m7f_A Length = 105

 Score =  103 bits (260), Expect = 5e-27
 Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 7/106 (6%)

Query: 8   HDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI 66
           H    W+ G ++R+E+  I+  +   +G FL+RDS +    +VL +  + K+ ++ I   
Sbjct: 2   HRTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPC 61

Query: 67  TNTEQQTCYKI--GDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 108
            + + QT + +  G+  FSDL  L+ FY+++   L    L     +
Sbjct: 62  ED-DGQTFFSLDDGNTKFSDLIQLVDFYQLNKGVL-PCKLKHHCIR 105

>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling protein; 1.65A {Homo sapiens} SCOP: d.93.1.1 PDB: 3m7f_A Length = 105

 Score =  103 bits (260), Expect = 5e-27
 Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 7/106 (6%)

Query: 283 HDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI 341
           H    W+ G ++R+E+  I+  +   +G FL+RDS +    +VL +  + K+ ++ I   
Sbjct: 2   HRTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPC 61

Query: 342 TNTEQQTCYKI--GDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 383
            + + QT + +  G+  FSDL  L+ FY+++   L    L     +
Sbjct: 62  ED-DGQTFFSLDDGNTKFSDLIQLVDFYQLNKGVL-PCKLKHHCIR 105

>3pqz_A Growth factor receptor-bound protein 7; SH2, binds phosphotyrosine, tyrosine kinases, cytoplasmic, P binding; 2.41A {Homo sapiens} PDB: 1mw4_A* 2l4k_A* 2qms_A Length = 117

 Score =  103 bits (260), Expect = 1e-26
 Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 7/108 (6%)

Query: 6   DPHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 64
             H    W+ G ++R+E+Q ++  +   +G FLVR+S      +VL +    KV HY+I 
Sbjct: 9   AIHRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLIL 68

Query: 65  KITNTEQQTCYKI--GDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 108
                E +  + +  G   F+DL  L+ F++++   L    L    T+
Sbjct: 69  PSEE-EGRLYFSMDDGQTRFTDLLQLVEFHQLNRGIL-PCLLRHCCTR 114

>3pqz_A Growth factor receptor-bound protein 7; SH2, binds phosphotyrosine, tyrosine kinases, cytoplasmic, P binding; 2.41A {Homo sapiens} PDB: 1mw4_A* 2l4k_A* 2qms_A Length = 117

 Score =  103 bits (260), Expect = 1e-26
 Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 7/108 (6%)

Query: 281 DPHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 339
             H    W+ G ++R+E+Q ++  +   +G FLVR+S      +VL +    KV HY+I 
Sbjct: 9   AIHRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLIL 68

Query: 340 KITNTEQQTCYKI--GDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 383
                E +  + +  G   F+DL  L+ F++++   L    L    T+
Sbjct: 69  PSEE-EGRLYFSMDDGQTRFTDLLQLVEFHQLNRGIL-PCLLRHCCTR 114

>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide binding protein; HET: PTR; 1.80A {Mus musculus} SCOP: d.93.1.1 PDB: 1r1q_A* 1r1s_A* Length = 100

 Score =  101 bits (254), Expect = 4e-26
 Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 5/93 (5%)

Query: 3  GTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYI 62
          G+F   +   W+   ++R +A+  LL  KD G F++R S +  G++ + V+  + V H+ 
Sbjct: 1  GSFIDIEFPEWFHEGLSRHQAEN-LLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFK 59

Query: 63 INKITNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
          + + T       Y +  + F  L  L+ +Y+  
Sbjct: 60 VMRDTKGN----YFLWTEKFPSLNKLVDYYRTT 88

>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide binding protein; HET: PTR; 1.80A {Mus musculus} SCOP: d.93.1.1 PDB: 1r1q_A* 1r1s_A* Length = 100

 Score =  101 bits (254), Expect = 4e-26
 Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 5/93 (5%)

Query: 278 GTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYI 337
           G+F   +   W+   ++R +A+  LL  KD G F++R S +  G++ + V+  + V H+ 
Sbjct: 1   GSFIDIEFPEWFHEGLSRHQAEN-LLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFK 59

Query: 338 INKITNTEQQTCYKIGDKTFSDLPSLLAFYKVH 370
           + + T       Y +  + F  L  L+ +Y+  
Sbjct: 60  VMRDTKGN----YFLWTEKFPSLNKLVDYYRTT 88

>2cia_A Cytoplasmic protein NCK2; SH2-domain, SH3 domain, phosphorylation, binding specificity; HET: PTR MPD; 1.45A {Homo sapiens} PDB: 1z3k_A 2ci9_A* 2ci8_A* Length = 102

 Score =  101 bits (253), Expect = 5e-26
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 5/89 (5%)

Query: 13  WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
           WY+G +TR +A+  L      G FL+RDS +   ++ + +K + K  H+ +  + N    
Sbjct: 7   WYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNV--- 63

Query: 73  TCYKIGDKTFSDLPSLLAFYKVHYLDTSP 101
             Y IG + F  +  L+  YK   + TS 
Sbjct: 64  --YCIGQRRFHTMDELVEHYKKAPIFTSE 90

>2cia_A Cytoplasmic protein NCK2; SH2-domain, SH3 domain, phosphorylation, binding specificity; HET: PTR MPD; 1.45A {Homo sapiens} PDB: 1z3k_A 2ci9_A* 2ci8_A* Length = 102

 Score =  101 bits (253), Expect = 5e-26
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 5/89 (5%)

Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 347
           WY+G +TR +A+  L      G FL+RDS +   ++ + +K + K  H+ +  + N    
Sbjct: 7   WYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNV--- 63

Query: 348 TCYKIGDKTFSDLPSLLAFYKVHYLDTSP 376
             Y IG + F  +  L+  YK   + TS 
Sbjct: 64  --YCIGQRRFHTMDELVEHYKKAPIFTSE 90

>2aug_A Growth factor receptor-bound protein 14; phosphorylation, SH2 domain, signaling protein; 2.30A {Homo sapiens} Length = 126

 Score =  101 bits (253), Expect = 9e-26
 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 5/107 (4%)

Query: 6   DPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 64
             H    W+   ++R EAQ +++     +G FLVRDS +    +VL +    K+ H+ I 
Sbjct: 21  MIHRSQPWFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTFVLSMSHGQKIKHFQII 80

Query: 65  KITNTEQ-QTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 108
            + +  +       G   F+DL  L+ FY+++   L    L     +
Sbjct: 81  PVEDDGEMFHTLDDGHTRFTDLIQLVEFYQLNKGVLPC-KLKHYCAR 126

>2aug_A Growth factor receptor-bound protein 14; phosphorylation, SH2 domain, signaling protein; 2.30A {Homo sapiens} Length = 126

 Score =  101 bits (253), Expect = 9e-26
 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 5/107 (4%)

Query: 281 DPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 339
             H    W+   ++R EAQ +++     +G FLVRDS +    +VL +    K+ H+ I 
Sbjct: 21  MIHRSQPWFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTFVLSMSHGQKIKHFQII 80

Query: 340 KITNTEQ-QTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 383
            + +  +       G   F+DL  L+ FY+++   L    L     +
Sbjct: 81  PVEDDGEMFHTLDDGHTRFTDLIQLVEFYQLNKGVLPC-KLKHYCAR 126

>1jyr_A Growth factor receptor-bound protein 2; receptor binding, regulatory, inhibitor, signaling protein-I complex; HET: PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A* 1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E* 1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A* Length = 96

 Score = 98.8 bits (247), Expect = 3e-25
 Identities = 23/84 (27%), Positives = 47/84 (55%), Gaps = 4/84 (4%)

Query: 12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 71
          +W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+ + +    + 
Sbjct: 4  AWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLR----DG 59

Query: 72 QTCYKIGDKTFSDLPSLLAFYKVH 95
             Y +    F+ L  L+ +++  
Sbjct: 60 AGKYFLWVVKFNSLNELVDYHRST 83

>1jyr_A Growth factor receptor-bound protein 2; receptor binding, regulatory, inhibitor, signaling protein-I complex; HET: PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A* 1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E* 1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A* Length = 96

 Score = 98.8 bits (247), Expect = 3e-25
 Identities = 23/84 (27%), Positives = 47/84 (55%), Gaps = 4/84 (4%)

Query: 287 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 346
           +W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+ + +    + 
Sbjct: 4   AWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLR----DG 59

Query: 347 QTCYKIGDKTFSDLPSLLAFYKVH 370
              Y +    F+ L  L+ +++  
Sbjct: 60  AGKYFLWVVKFNSLNELVDYHRST 83

>2ecd_A Tyrosine-protein kinase ABL2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 98.9 bits (247), Expect = 6e-25
 Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 7/105 (6%)

Query: 6   DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
           +  +++SWY G ++R  A+  LLS   NG+FLVR+S +  G   + ++   +V HY   +
Sbjct: 11  NSLEKHSWYHGPVSRSAAEY-LLSSLINGSFLVRESESSPGQLSISLRYEGRVYHY---R 66

Query: 66  ITNTEQQTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 108
           I  T     Y   +  FS L  L+  +      L T+ L  PA K
Sbjct: 67  INTTADGKVYVTAESRFSTLAELVHHHSTVADGLVTT-LHYPAPK 110

>2ecd_A Tyrosine-protein kinase ABL2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 98.9 bits (247), Expect = 6e-25
 Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 7/105 (6%)

Query: 281 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 340
           +  +++SWY G ++R  A+  LLS   NG+FLVR+S +  G   + ++   +V HY   +
Sbjct: 11  NSLEKHSWYHGPVSRSAAEY-LLSSLINGSFLVRESESSPGQLSISLRYEGRVYHY---R 66

Query: 341 ITNTEQQTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 383
           I  T     Y   +  FS L  L+  +      L T+ L  PA K
Sbjct: 67  INTTADGKVYVTAESRFSTLAELVHHHSTVADGLVTT-LHYPAPK 110

>3us4_A Megakaryocyte-associated tyrosine-protein kinase; SH2 domain, signaling protein, structural genomics, joint CE structural genomics, JCSG; 1.50A {Homo sapiens} PDB: 1jwo_A Length = 98

 Score = 98.0 bits (245), Expect = 7e-25
 Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 6/97 (6%)

Query: 13  WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
           W+ G ++ QEA   L   +D G FLVR+S    G+YVLCV     V HY +         
Sbjct: 7   WFHGKISGQEAVQQLQPPED-GLFLVRESARHPGDYVLCVSFGRDVIHYRVLH----RDG 61

Query: 73  TCYKIGDKTFSDLPSLLAFYKVHYL-DTSPLIKPATK 108
                    F +L  ++  Y        + L++P  K
Sbjct: 62  HLTIDEAVFFCNLMDMVEHYSKDKGAICTKLVRPKRK 98

>3us4_A Megakaryocyte-associated tyrosine-protein kinase; SH2 domain, signaling protein, structural genomics, joint CE structural genomics, JCSG; 1.50A {Homo sapiens} PDB: 1jwo_A Length = 98

 Score = 98.0 bits (245), Expect = 7e-25
 Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 6/97 (6%)

Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 347
           W+ G ++ QEA   L   +D G FLVR+S    G+YVLCV     V HY +         
Sbjct: 7   WFHGKISGQEAVQQLQPPED-GLFLVRESARHPGDYVLCVSFGRDVIHYRVLH----RDG 61

Query: 348 TCYKIGDKTFSDLPSLLAFYKVHYL-DTSPLIKPATK 383
                    F +L  ++  Y        + L++P  K
Sbjct: 62  HLTIDEAVFFCNLMDMVEHYSKDKGAICTKLVRPKRK 98

>2kk6_A Proto-oncogene tyrosine-protein kinase FER; methods development, SH2, NESG, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; NMR {Homo sapiens} Length = 116

 Score = 97.0 bits (242), Expect = 2e-24
 Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 13/111 (11%)

Query: 4   TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
              P     WY G + R EAQ +L   K  G FLVR+S+   G YVL V  + +  H+II
Sbjct: 10  HMKPLAEQDWYHGAIPRIEAQELL---KKQGDFLVRESHGKPGEYVLSVYSDGQRRHFII 66

Query: 64  NKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYL-----DTSPLIKPATKT 109
             + N      Y+     FS++P L+  +              L+ P  K 
Sbjct: 67  QYVDNM-----YRFEGTGFSNIPQLIDHHYTTKQVITKKSGVVLLNPIPKD 112

>2kk6_A Proto-oncogene tyrosine-protein kinase FER; methods development, SH2, NESG, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; NMR {Homo sapiens} Length = 116

 Score = 97.0 bits (242), Expect = 2e-24
 Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 13/111 (11%)

Query: 279 TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 338
              P     WY G + R EAQ +L   K  G FLVR+S+   G YVL V  + +  H+II
Sbjct: 10  HMKPLAEQDWYHGAIPRIEAQELL---KKQGDFLVRESHGKPGEYVLSVYSDGQRRHFII 66

Query: 339 NKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYL-----DTSPLIKPATKT 384
             + N      Y+     FS++P L+  +              L+ P  K 
Sbjct: 67  QYVDNM-----YRFEGTGFSNIPQLIDHHYTTKQVITKKSGVVLLNPIPKD 112

>2dlz_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 96.9 bits (242), Expect = 3e-24
 Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 11/111 (9%)

Query: 5   FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 64
              +    W+ G M RQ+    LL    +G +L+R+       + + +K N++V H  + 
Sbjct: 10  EIDYTAYPWFAGNMERQQTDN-LLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVV 68

Query: 65  KITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTS------PLIKPATKT 109
           +    +    +    K F  L  L+ +Y+ H L  S       L  P +  
Sbjct: 69  E----KDNWIHITEAKKFDSLLELVEYYQCHSLKESFKQLDTTLKYPYSGP 115

>2dlz_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 96.9 bits (242), Expect = 3e-24
 Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 11/111 (9%)

Query: 280 FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 339
              +    W+ G M RQ+    LL    +G +L+R+       + + +K N++V H  + 
Sbjct: 10  EIDYTAYPWFAGNMERQQTDN-LLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVV 68

Query: 340 KITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTS------PLIKPATKT 384
           +    +    +    K F  L  L+ +Y+ H L  S       L  P +  
Sbjct: 69  E----KDNWIHITEAKKFDSLLELVEYYQCHSLKESFKQLDTTLKYPYSGP 115

>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6 (PTK6/BRK), SRC homology 2(S domain, solution structure, backbone dynamics, transferase; NMR {Homo sapiens} SCOP: d.93.1.1 Length = 100

 Score = 96.1 bits (240), Expect = 3e-24
 Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 7/99 (7%)

Query: 13  WYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 71
           W+FG ++R EA   L +E    GAFL+R S     +YVL V++   V HY I +      
Sbjct: 4   WFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAG--- 60

Query: 72  QTCYKIGDK-TFSDLPSLLAFYKVHYL-DTSPLIKPATK 108
                + +  +F  LP L+ +++   L     L  P  K
Sbjct: 61  -GRLHLNEAVSFLSLPELVNYHRAQSLSHGLRLAAPCRK 98

>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6 (PTK6/BRK), SRC homology 2(S domain, solution structure, backbone dynamics, transferase; NMR {Homo sapiens} SCOP: d.93.1.1 Length = 100

 Score = 96.1 bits (240), Expect = 3e-24
 Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 7/99 (7%)

Query: 288 WYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 346
           W+FG ++R EA   L +E    GAFL+R S     +YVL V++   V HY I +      
Sbjct: 4   WFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAG--- 60

Query: 347 QTCYKIGDK-TFSDLPSLLAFYKVHYL-DTSPLIKPATK 383
                + +  +F  LP L+ +++   L     L  P  K
Sbjct: 61  -GRLHLNEAVSFLSLPELVNYHRAQSLSHGLRLAAPCRK 98

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A Length = 57

 Score = 94.1 bits (235), Expect = 4e-24
 Identities = 33/56 (58%), Positives = 41/56 (73%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 166
           E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ G IPVPYV+KY
Sbjct: 2   EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 57

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A Length = 57

 Score = 94.1 bits (235), Expect = 4e-24
 Identities = 33/56 (58%), Positives = 41/56 (73%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 441
           E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ G IPVPYV+KY
Sbjct: 2   EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 57

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A Length = 57

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGE-LNGKTGHFPFTHVE 260
           N  D+  L  + GDI+++        W  E   GK G  P  +VE
Sbjct: 11  NGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 55

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A Length = 57

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 492 NAYDKTALKLEIGDIIKVTKTNINGQWEGE-LNGKTGHFPFTHVE 535
           N  D+  L  + GDI+++        W  E   GK G  P  +VE
Sbjct: 11  NGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 55

>1h9o_A Phosphatidylinositol 3-kinase; transferase/receptor, complex (phosphotransferase/receptor), phosphotransferase, SH2 domain; HET: PTR; 1.79A {Homo sapiens} SCOP: d.93.1.1 PDB: 1pic_A* 1bfi_A 1bfj_A 1qad_A Length = 112

 Score = 96.2 bits (240), Expect = 5e-24
 Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 11/108 (10%)

Query: 8   HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKIT 67
           HD  +W  G   R +A+ +L  ++D G FLVR+S+   G Y   V  + +V H +INK  
Sbjct: 7   HDEKTWNVGSSNRNKAENLLRGKRD-GTFLVRESSKQ-GCYACSVVVDGEVKHCVINK-- 62

Query: 68  NTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTS------PLIKPATKT 109
            T     +      +S L  L+  Y+   L          L  P    
Sbjct: 63  -TATGYGFAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPVYAQ 109

>1h9o_A Phosphatidylinositol 3-kinase; transferase/receptor, complex (phosphotransferase/receptor), phosphotransferase, SH2 domain; HET: PTR; 1.79A {Homo sapiens} SCOP: d.93.1.1 PDB: 1pic_A* 1bfi_A 1bfj_A 1qad_A Length = 112

 Score = 96.2 bits (240), Expect = 5e-24
 Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 11/108 (10%)

Query: 283 HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKIT 342
           HD  +W  G   R +A+ +L  ++D G FLVR+S+   G Y   V  + +V H +INK  
Sbjct: 7   HDEKTWNVGSSNRNKAENLLRGKRD-GTFLVRESSKQ-GCYACSVVVDGEVKHCVINK-- 62

Query: 343 NTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTS------PLIKPATKT 384
            T     +      +S L  L+  Y+   L          L  P    
Sbjct: 63  -TATGYGFAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPVYAQ 109

>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain, phosphotyrosine binding, signaling protein, signaling protein-antagonist complex; HET: PTR; 1.60A {Homo sapiens} PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A* 3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A* 2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A* 1fyr_A* ... Length = 117

 Score = 95.8 bits (239), Expect = 7e-24
 Identities = 24/102 (23%), Positives = 52/102 (50%), Gaps = 9/102 (8%)

Query: 13  WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
           W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+ + +  +   +
Sbjct: 8   WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLR--DGAGK 65

Query: 73  TCYKIGDKTFSDLPSLLAFYKVHYLDTS-----PLIKPATKT 109
             Y +    F+ L  L+ +++   +  +       I+   + 
Sbjct: 66  --YFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQ 105

>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain, phosphotyrosine binding, signaling protein, signaling protein-antagonist complex; HET: PTR; 1.60A {Homo sapiens} PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A* 3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A* 2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A* 1fyr_A* ... Length = 117

 Score = 95.8 bits (239), Expect = 7e-24
 Identities = 24/102 (23%), Positives = 52/102 (50%), Gaps = 9/102 (8%)

Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 347
           W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+ + +  +   +
Sbjct: 8   WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLR--DGAGK 65

Query: 348 TCYKIGDKTFSDLPSLLAFYKVHYLDTS-----PLIKPATKT 384
             Y +    F+ L  L+ +++   +  +       I+   + 
Sbjct: 66  --YFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQ 105

>2hdv_A SH2-B PH domain containing signaling mediator 1 gamma isoform; adapter protein, signaling protein; 2.00A {Mus musculus} PDB: 2hdx_A* 1rpy_A 1rqq_C* Length = 111

 Score = 95.5 bits (238), Expect = 8e-24
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 6/97 (6%)

Query: 3  GTFDPHDRNSWYFGMMTRQEAQAILL--SEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
          G+  P     W+ GM++R +A  ++L      +G FLVR S T  G  VL      K  H
Sbjct: 1  GSDQPLSGYPWFHGMLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGECVLTFNFQGKAKH 60

Query: 61 YIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYL 97
            ++   N   Q   ++    F  +  +L  ++VH +
Sbjct: 61 LRLSL--NAAGQ--CRVQHLHFQSIFDMLEHFRVHPI 93

>2hdv_A SH2-B PH domain containing signaling mediator 1 gamma isoform; adapter protein, signaling protein; 2.00A {Mus musculus} PDB: 2hdx_A* 1rpy_A 1rqq_C* Length = 111

 Score = 95.5 bits (238), Expect = 8e-24
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 6/97 (6%)

Query: 278 GTFDPHDRNSWYFGMMTRQEAQAILL--SEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 335
           G+  P     W+ GM++R +A  ++L      +G FLVR S T  G  VL      K  H
Sbjct: 1   GSDQPLSGYPWFHGMLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGECVLTFNFQGKAKH 60

Query: 336 YIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYL 372
             ++   N   Q   ++    F  +  +L  ++VH +
Sbjct: 61  LRLSL--NAAGQ--CRVQHLHFQSIFDMLEHFRVHPI 93

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens} Length = 68

 Score = 93.9 bits (234), Expect = 9e-24
 Identities = 25/60 (41%), Positives = 35/60 (58%)

Query: 109 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
           T E+ IA  DF      DL FKK +IL+V+ K  + WW A++  G  G +P  Y++ YSE
Sbjct: 9   TGEEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLEPYSE 68

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens} Length = 68

 Score = 93.9 bits (234), Expect = 9e-24
 Identities = 25/60 (41%), Positives = 35/60 (58%)

Query: 384 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 443
           T E+ IA  DF      DL FKK +IL+V+ K  + WW A++  G  G +P  Y++ YSE
Sbjct: 9   TGEEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLEPYSE 68

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A Length = 67

 Score = 93.2 bits (232), Expect = 1e-23
 Identities = 40/64 (62%), Positives = 47/64 (73%)

Query: 480 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT 539
           P FA+  Q RVP AYDKTAL LE+GDI+KVT+ NINGQWEGE+NG+ G FPFTHV+    
Sbjct: 1   PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDP 60

Query: 540 NETS 543
               
Sbjct: 61  QNPD 64

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A Length = 67

 Score = 92.4 bits (230), Expect = 3e-23
 Identities = 40/62 (64%), Positives = 47/62 (75%)

Query: 205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT 264
           P FA+  Q RVP AYDKTAL LE+GDI+KVT+ NINGQWEGE+NG+ G FPFTHV+    
Sbjct: 1   PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDP 60

Query: 265 NE 266
             
Sbjct: 61  QN 62

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A Length = 67

 Score = 59.3 bits (144), Expect = 1e-11
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
           K I K      D   L  +  DI+ V   +    W  + ++G  G  P  +V+ +  
Sbjct: 5   KAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGE-VNGRKGLFPFTHVKIFDP 60

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A Length = 67

 Score = 59.3 bits (144), Expect = 1e-11
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 443
           K I K      D   L  +  DI+ V   +    W  + ++G  G  P  +V+ +  
Sbjct: 5   KAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGE-VNGRKGLFPFTHVKIFDP 60

>2dly_A FYN-related kinase; BRK family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 121

 Score = 95.0 bits (237), Expect = 1e-23
 Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 5/106 (4%)

Query: 6   DPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 64
                  W+FG + R +A+  LL  E   GAFL+R+S +  G++ L V +   V HY   
Sbjct: 11  RSLQAEPWFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLDEGVVKHY--- 67

Query: 65  KITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLD-TSPLIKPATKT 109
           +I   ++   +    K FS L   + +Y          L KP  K 
Sbjct: 68  RIRRLDEGGFFLTRRKVFSTLNEFVNYYTTTSDGLCVKLEKPCLKI 113

>2dly_A FYN-related kinase; BRK family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 121

 Score = 95.0 bits (237), Expect = 1e-23
 Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 5/106 (4%)

Query: 281 DPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 339
                  W+FG + R +A+  LL  E   GAFL+R+S +  G++ L V +   V HY   
Sbjct: 11  RSLQAEPWFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLDEGVVKHY--- 67

Query: 340 KITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLD-TSPLIKPATKT 384
           +I   ++   +    K FS L   + +Y          L KP  K 
Sbjct: 68  RIRRLDEGGFFLTRRKVFSTLNEFVNYYTTTSDGLCVKLEKPCLKI 113

>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine kinase, signal transduction, peptide recognition, signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1 PDB: 1d1z_A 1d4w_A* 1m27_A* Length = 104

 Score = 94.3 bits (235), Expect = 2e-23
 Identities = 24/104 (23%), Positives = 52/104 (50%), Gaps = 5/104 (4%)

Query: 9   DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 68
           D  + Y G ++R+  + +LL+   +G++L+RDS ++ G Y LCV  +  +  Y +++   
Sbjct: 2   DAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTET 61

Query: 69  TEQ--QTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 108
                +T   +  + F  + +L++ ++     +   PL  P  K
Sbjct: 62  GSWSAETAPGVHKRYFRKIKNLISAFQKPDQGIVI-PLQYPVEK 104

>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine kinase, signal transduction, peptide recognition, signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1 PDB: 1d1z_A 1d4w_A* 1m27_A* Length = 104

 Score = 94.3 bits (235), Expect = 2e-23
 Identities = 24/104 (23%), Positives = 52/104 (50%), Gaps = 5/104 (4%)

Query: 284 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 343
           D  + Y G ++R+  + +LL+   +G++L+RDS ++ G Y LCV  +  +  Y +++   
Sbjct: 2   DAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTET 61

Query: 344 TEQ--QTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 383
                +T   +  + F  + +L++ ++     +   PL  P  K
Sbjct: 62  GSWSAETAPGVHKRYFRKIKNLISAFQKPDQGIVI-PLQYPVEK 104

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 88

 Score = 93.7 bits (233), Expect = 2e-23
 Identities = 41/69 (59%), Positives = 49/69 (71%)

Query: 480 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT 539
           P FA+  Q RVP AYDKTAL LE+GDI+KVT+ NINGQWEGE+NG+ G FPFTHV+    
Sbjct: 16  PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDP 75

Query: 540 NETSVETNG 548
                  +G
Sbjct: 76  QNPDENESG 84

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 88

 Score = 91.4 bits (227), Expect = 1e-22
 Identities = 41/69 (59%), Positives = 48/69 (69%)

Query: 205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT 264
           P FA+  Q RVP AYDKTAL LE+GDI+KVT+ NINGQWEGE+NG+ G FPFTHV+    
Sbjct: 16  PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDP 75

Query: 265 NETMPFHSS 273
                  S 
Sbjct: 76  QNPDENESG 84

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 88

 Score = 64.4 bits (157), Expect = 3e-13
 Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 1/64 (1%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
                  K I K      D   L  +  DI+ V   +    W  + ++G  G  P  +V+
Sbjct: 13  QNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGE-VNGRKGLFPFTHVK 71

Query: 165 KYSE 168
            +  
Sbjct: 72  IFDP 75

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 88

 Score = 64.4 bits (157), Expect = 3e-13
 Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 1/64 (1%)

Query: 380 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
                  K I K      D   L  +  DI+ V   +    W  + ++G  G  P  +V+
Sbjct: 13  QNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGE-VNGRKGLFPFTHVK 71

Query: 440 KYSE 443
            +  
Sbjct: 72  IFDP 75

>3eaz_A Tyrosine-protein kinase CSK; SH2, disulfide, oxidized reduced, ATP-binding, cell membrane, cytoplasm, membrane, nucleotide-binding, phosphoprotein; 1.31A {Homo sapiens} PDB: 3eac_A Length = 106

 Score = 93.8 bits (234), Expect = 2e-23
 Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 12/111 (10%)

Query: 8   HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKIT 67
                W+ G +TR++A+ +L   +  G FLVR+S    G+Y LCV  + KV HY   +I 
Sbjct: 5   LSLMPWFHGKITREQAERLLYPPET-GLFLVRESTNYPGDYTLCVSSDGKVEHY---RIM 60

Query: 68  NTEQQTCYKIGDK-TFSDLPSLLAFYKVH--YLDTSPLIKPATKTIEKVIA 115
               +    I ++  F +L  L+  Y      L T  LIKP     E  +A
Sbjct: 61  YHASK--LSIDEEVYFENLMQLVEHYTSDADGLCT-RLIKPKVM--EGTVA 106

>3eaz_A Tyrosine-protein kinase CSK; SH2, disulfide, oxidized reduced, ATP-binding, cell membrane, cytoplasm, membrane, nucleotide-binding, phosphoprotein; 1.31A {Homo sapiens} PDB: 3eac_A Length = 106

 Score = 93.8 bits (234), Expect = 2e-23
 Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 12/111 (10%)

Query: 283 HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKIT 342
                W+ G +TR++A+ +L   +  G FLVR+S    G+Y LCV  + KV HY   +I 
Sbjct: 5   LSLMPWFHGKITREQAERLLYPPET-GLFLVRESTNYPGDYTLCVSSDGKVEHY---RIM 60

Query: 343 NTEQQTCYKIGDK-TFSDLPSLLAFYKVH--YLDTSPLIKPATKTIEKVIA 390
               +    I ++  F +L  L+  Y      L T  LIKP     E  +A
Sbjct: 61  YHASK--LSIDEEVYFENLMQLVEHYTSDADGLCT-RLIKPKVM--EGTVA 106

>2cs0_A Hematopoietic SH2 domain containing; ALX, FLJ14886, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.93.1.1 Length = 119

 Score = 94.3 bits (235), Expect = 2e-23
 Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 8/115 (6%)

Query: 272 SSMKMTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENN 331
           SS    G         W+ G ++R++A+ +L S+   G+FL+R S++ +G Y L  K  +
Sbjct: 2   SSGSSGGQLAQDGVPEWFHGAISREDAENLLESQPL-GSFLIRVSHSHVG-YTLSYKAQS 59

Query: 332 KVSHYIINKITNTEQQTCYKIGDK-TFSDLPSLLAFYKVHYLDTSP--LIKPATK 383
              H+    +   +  T    G+K   + L +L+ F++   ++     L +P  +
Sbjct: 60  SCCHF---MVKLLDDGTFMIPGEKVAHTSLDALVTFHQQKPIEPRRELLTQPCRQ 111

>2cs0_A Hematopoietic SH2 domain containing; ALX, FLJ14886, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.93.1.1 Length = 119

 Score = 93.6 bits (233), Expect = 4e-23
 Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 8/109 (7%)

Query: 3   GTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYI 62
           G         W+ G ++R++A+ +L S+   G+FL+R S++ +G Y L  K  +   H+ 
Sbjct: 8   GQLAQDGVPEWFHGAISREDAENLLESQPL-GSFLIRVSHSHVG-YTLSYKAQSSCCHF- 64

Query: 63  INKITNTEQQTCYKIGDK-TFSDLPSLLAFYKVHYLDTSP--LIKPATK 108
              +   +  T    G+K   + L +L+ F++   ++     L +P  +
Sbjct: 65  --MVKLLDDGTFMIPGEKVAHTSLDALVTFHQQKPIEPRRELLTQPCRQ 111

>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1ka7_A Length = 128

 Score = 94.8 bits (236), Expect = 2e-23
 Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 5/127 (3%)

Query: 9   DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 68
           D  + Y G ++R+  + +LL+   +G++L+RDS ++ G Y LCV  +  +  Y +++   
Sbjct: 2   DAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTET 61

Query: 69  TEQ--QTCYKIGDKTFSDLPSLLAFYKVHYLD--TSPLIKPATKTIEKVIAKYDFDGNDP 124
                +T   +  + F  + +L++ ++         PL  P  K       +      + 
Sbjct: 62  GSWSAETAPGVHKRYFRKIKNLISAFQ-KPDQGIVIPLQYPVEKKSSARSTQGTTGIRED 120

Query: 125 DDLPFKK 131
            D+  K 
Sbjct: 121 PDVCLKA 127

>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1ka7_A Length = 128

 Score = 94.8 bits (236), Expect = 2e-23
 Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 5/127 (3%)

Query: 284 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 343
           D  + Y G ++R+  + +LL+   +G++L+RDS ++ G Y LCV  +  +  Y +++   
Sbjct: 2   DAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTET 61

Query: 344 TEQ--QTCYKIGDKTFSDLPSLLAFYKVHYLD--TSPLIKPATKTIEKVIAKYDFDGNDP 399
                +T   +  + F  + +L++ ++         PL  P  K       +      + 
Sbjct: 62  GSWSAETAPGVHKRYFRKIKNLISAFQ-KPDQGIVIPLQYPVEKKSSARSTQGTTGIRED 120

Query: 400 DDLPFKK 406
            D+  K 
Sbjct: 121 PDVCLKA 127

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1 Length = 65

 Score = 91.9 bits (229), Expect = 3e-23
 Identities = 33/60 (55%), Positives = 42/60 (70%)

Query: 109 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
           + E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ G IPVPYV+KY  
Sbjct: 2   SAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYHH 61

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1 Length = 65

 Score = 91.9 bits (229), Expect = 3e-23
 Identities = 33/60 (55%), Positives = 42/60 (70%)

Query: 384 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 443
           + E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ G IPVPYV+KY  
Sbjct: 2   SAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYHH 61

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1 Length = 65

 Score = 40.3 bits (95), Expect = 6e-05
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGE-LNGKTGHFPFTHVEFIPTN 265
           N  D+  L  + GDI+++        W  E   GK G  P  +VE    +
Sbjct: 13  NGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYHHH 62

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1 Length = 65

 Score = 40.3 bits (95), Expect = 6e-05
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 492 NAYDKTALKLEIGDIIKVTKTNINGQWEGE-LNGKTGHFPFTHVEFIPTN 540
           N  D+  L  + GDI+++        W  E   GK G  P  +VE    +
Sbjct: 13  NGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYHHH 62

>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal transduction lymphocyte, signaling protein; HET: PTR; 2.15A {Mus musculus} SCOP: d.93.1.1 Length = 103

 Score = 93.1 bits (232), Expect = 3e-23
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 2/85 (2%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTE-- 70
          +Y G +T++E +A+LL    +G FL+RDS ++ G   LCV     V  Y I +  +    
Sbjct: 5  YYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHGYYR 64

Query: 71 QQTCYKIGDKTFSDLPSLLAFYKVH 95
           +T        F +L  L++ Y   
Sbjct: 65 IETDAHTPRTIFPNLQELVSKYGKP 89

>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal transduction lymphocyte, signaling protein; HET: PTR; 2.15A {Mus musculus} SCOP: d.93.1.1 Length = 103

 Score = 93.1 bits (232), Expect = 3e-23
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 2/85 (2%)

Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTE-- 345
           +Y G +T++E +A+LL    +G FL+RDS ++ G   LCV     V  Y I +  +    
Sbjct: 5   YYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHGYYR 64

Query: 346 QQTCYKIGDKTFSDLPSLLAFYKVH 370
            +T        F +L  L++ Y   
Sbjct: 65  IETDAHTPRTIFPNLQELVSKYGKP 89

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens} Length = 67

 Score = 92.0 bits (229), Expect = 4e-23
 Identities = 41/62 (66%), Positives = 49/62 (79%)

Query: 205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT 264
           P +ARV Q RVPNAYDKTAL LE+G+++KVTK N++GQWEGE NGK GHFPFTHV  +  
Sbjct: 6   PIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQ 65

Query: 265 NE 266
             
Sbjct: 66  QN 67

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens} Length = 67

 Score = 92.0 bits (229), Expect = 4e-23
 Identities = 41/62 (66%), Positives = 49/62 (79%)

Query: 480 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT 539
           P +ARV Q RVPNAYDKTAL LE+G+++KVTK N++GQWEGE NGK GHFPFTHV  +  
Sbjct: 6   PIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQ 65

Query: 540 NE 541
             
Sbjct: 66  QN 67

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens} Length = 67

 Score = 59.3 bits (144), Expect = 1e-11
 Identities = 9/58 (15%), Positives = 20/58 (34%), Gaps = 3/58 (5%)

Query: 113 VIAKYDFDGN--DPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
                    N  D   L  +  +++ V   +    W  +  +G+ G  P  +V+   +
Sbjct: 9   ARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGE-CNGKRGHFPFTHVRLLDQ 65

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens} Length = 67

 Score = 59.3 bits (144), Expect = 1e-11
 Identities = 9/58 (15%), Positives = 20/58 (34%), Gaps = 3/58 (5%)

Query: 388 VIAKYDFDGN--DPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 443
                    N  D   L  +  +++ V   +    W  +  +G+ G  P  +V+   +
Sbjct: 9   ARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGE-CNGKRGHFPFTHVRLLDQ 65

>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain, protein protein interactions, PTR residues, HYDR peptide complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A* 1aya_A* 1ayb_A* 1ayc_A* 1ayd_A Length = 109

 Score = 93.5 bits (233), Expect = 4e-23
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 11/104 (10%)

Query: 13  WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
           W+   +T  EA+ +LL+   +G+FL R S +  G++ L V+ N  V+H    KI NT   
Sbjct: 9   WFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHI---KIQNTGDY 65

Query: 73  TCYKIGDKTFSDLPSLLAFYKVHYLDTS-------PLIKPATKT 109
                G + F+ L  L+ +Y  H+            L  P    
Sbjct: 66  -YDLYGGEKFATLAELVQYYMEHHGQLKEKNGDVIELKYPLNCA 108

>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain, protein protein interactions, PTR residues, HYDR peptide complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A* 1aya_A* 1ayb_A* 1ayc_A* 1ayd_A Length = 109

 Score = 93.5 bits (233), Expect = 4e-23
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 11/104 (10%)

Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 347
           W+   +T  EA+ +LL+   +G+FL R S +  G++ L V+ N  V+H    KI NT   
Sbjct: 9   WFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHI---KIQNTGDY 65

Query: 348 TCYKIGDKTFSDLPSLLAFYKVHYLDTS-------PLIKPATKT 384
                G + F+ L  L+ +Y  H+            L  P    
Sbjct: 66  -YDLYGGEKFATLAELVQYYMEHHGQLKEKNGDVIELKYPLNCA 108

>1mil_A SHC adaptor protein; SH2 domain, phosphorylation, collagen, growth regulation, transforming protein, alternative initiation; 2.70A {Homo sapiens} SCOP: d.93.1.1 PDB: 1tce_A* Length = 104

 Score = 92.7 bits (231), Expect = 6e-23
 Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 14/104 (13%)

Query: 13  WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
           W+ G ++R+EA+A+L   + NG FLVR+S T  G YVL   ++ +  H ++      + +
Sbjct: 9   WFHGKLSRREAEALL---QLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLL-----VDPE 60

Query: 73  TCYKIGDKTFSDLPSLLAFYKVHYLDTSP------LIKPATKTI 110
              +  D  F  +  L++++  ++L          L +P  + +
Sbjct: 61  GVVRTKDHRFESVSHLISYHMDNHLPIISAGSELCLQQPVERKL 104

>1mil_A SHC adaptor protein; SH2 domain, phosphorylation, collagen, growth regulation, transforming protein, alternative initiation; 2.70A {Homo sapiens} SCOP: d.93.1.1 PDB: 1tce_A* Length = 104

 Score = 92.7 bits (231), Expect = 6e-23
 Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 14/104 (13%)

Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 347
           W+ G ++R+EA+A+L   + NG FLVR+S T  G YVL   ++ +  H ++      + +
Sbjct: 9   WFHGKLSRREAEALL---QLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLL-----VDPE 60

Query: 348 TCYKIGDKTFSDLPSLLAFYKVHYLDTSP------LIKPATKTI 385
              +  D  F  +  L++++  ++L          L +P  + +
Sbjct: 61  GVVRTKDHRFESVSHLISYHMDNHLPIISAGSELCLQQPVERKL 104

>2crh_A VAV proto-oncogene; oncoprotein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2ror_A* 2lct_A* Length = 138

 Score = 93.6 bits (233), Expect = 7e-23
 Identities = 28/133 (21%), Positives = 44/133 (33%), Gaps = 21/133 (15%)

Query: 257 THVEFIPTNETMPFHSSMKMTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDS 316
              E        P                + WY G M R  A++ +L+ + +G FLVR  
Sbjct: 7   GKAEAEQNWWEGPP----------QDLSVHLWYAGPMERAGAES-ILANRSDGTFLVRQR 55

Query: 317 NTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTS- 375
                 + + +K N +V H  I       +        K F  L  L+ FY+ + L    
Sbjct: 56  VKDAAEFAISIKYNVEVKHIKIMT----AEGLYRITEKKAFRGLTELVEFYQQNSLKDCF 111

Query: 376 -----PLIKPATK 383
                 L  P  +
Sbjct: 112 KSLDTTLQFPFKE 124

>2crh_A VAV proto-oncogene; oncoprotein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2ror_A* 2lct_A* Length = 138

 Score = 93.2 bits (232), Expect = 1e-22
 Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 11/109 (10%)

Query: 6   DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
                + WY G M R  A++ +L+ + +G FLVR        + + +K N +V H  I  
Sbjct: 21  QDLSVHLWYAGPMERAGAES-ILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIMT 79

Query: 66  ITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTS------PLIKPATK 108
                +        K F  L  L+ FY+ + L          L  P  +
Sbjct: 80  ----AEGLYRITEKKAFRGLTELVEFYQQNSLKDCFKSLDTTLQFPFKE 124

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A Length = 67

 Score = 90.8 bits (226), Expect = 1e-22
 Identities = 19/64 (29%), Positives = 36/64 (56%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
            +T  ++KV+A YD+   + +DL  +K D   ++ +    WW A++ +G+ G IP  YV 
Sbjct: 3   MSTSELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVT 62

Query: 165 KYSE 168
           +  +
Sbjct: 63  EAED 66

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A Length = 67

 Score = 90.8 bits (226), Expect = 1e-22
 Identities = 19/64 (29%), Positives = 36/64 (56%)

Query: 380 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
            +T  ++KV+A YD+   + +DL  +K D   ++ +    WW A++ +G+ G IP  YV 
Sbjct: 3   MSTSELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVT 62

Query: 440 KYSE 443
           +  +
Sbjct: 63  EAED 66

>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens} Length = 119

 Score = 92.4 bits (230), Expect = 1e-22
 Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 12  SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 71
            W  G +TR +A+ +L     +G+FLVR S +I   Y LCV   N V  Y I    + + 
Sbjct: 11  CWNHGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYRNCVYTYRILPNEDDKF 70

Query: 72  --QTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 108
             Q    +  + F+ L  L+ FYK     L T  L  P   
Sbjct: 71  TVQASEGVSMRFFTKLDQLIEFYKKENMGLVT-HLQYPVPL 110

>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens} Length = 119

 Score = 92.4 bits (230), Expect = 1e-22
 Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 287 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 346
            W  G +TR +A+ +L     +G+FLVR S +I   Y LCV   N V  Y I    + + 
Sbjct: 11  CWNHGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYRNCVYTYRILPNEDDKF 70

Query: 347 --QTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 383
             Q    +  + F+ L  L+ FYK     L T  L  P   
Sbjct: 71  TVQASEGVSMRFFTKLDQLIEFYKKENMGLVT-HLQYPVPL 110

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 94.3 bits (234), Expect = 2e-22
 Identities = 28/171 (16%), Positives = 55/171 (32%), Gaps = 33/171 (19%)

Query: 376 PLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPV 435
           PL  P    ++   A  D++     ++     D++ VV K E  WW  Q    + G IP 
Sbjct: 2   PLGSPEFIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQM-KAKRGWIPA 60

Query: 436 PYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYD 495
            +++                             P+               +      AY 
Sbjct: 61  SFLE-----------------------------PLDSPDETEDPEPNYAGEPYVAIKAYT 91

Query: 496 KTA---LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS 543
                 + L  G+ ++V    ++G W    +  TG+FP  +++    + + 
Sbjct: 92  AVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQDVSQ 142

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 93.5 bits (232), Expect = 3e-22
 Identities = 28/170 (16%), Positives = 55/170 (32%), Gaps = 33/170 (19%)

Query: 101 PLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPV 160
           PL  P    ++   A  D++     ++     D++ VV K E  WW  Q    + G IP 
Sbjct: 2   PLGSPEFIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQM-KAKRGWIPA 60

Query: 161 PYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYD 220
            +++                             P+               +      AY 
Sbjct: 61  SFLE-----------------------------PLDSPDETEDPEPNYAGEPYVAIKAYT 91

Query: 221 KTA---LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET 267
                 + L  G+ ++V    ++G W    +  TG+FP  +++    + +
Sbjct: 92  AVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQDVS 141

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 63.1 bits (153), Expect = 1e-11
 Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 1/79 (1%)

Query: 93  KVHYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS 152
           +                 E  +A   +   + D++   + + + V+ K  + WW      
Sbjct: 64  EPLDSPDETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVI-RKD 122

Query: 153 GEVGSIPVPYVQKYSEGMS 171
              G  P  Y+QK  + +S
Sbjct: 123 DVTGYFPSMYLQKSGQDVS 141

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 63.1 bits (153), Expect = 1e-11
 Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 1/79 (1%)

Query: 368 KVHYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS 427
           +                 E  +A   +   + D++   + + + V+ K  + WW      
Sbjct: 64  EPLDSPDETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVI-RKD 122

Query: 428 GEVGSIPVPYVQKYSEGMS 446
              G  P  Y+QK  + +S
Sbjct: 123 DVTGYFPSMYLQKSGQDVS 141

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 49.6 bits (118), Expect = 4e-07
 Identities = 17/74 (22%), Positives = 37/74 (50%), Gaps = 3/74 (4%)

Query: 480 PAFARVKQVRVPNAYDKTA---LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEF 536
           P F  ++  R    Y+KT+   + L  GD+++V + + +G W  ++  K G  P + +E 
Sbjct: 6   PEFIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEP 65

Query: 537 IPTNETSVETNGNG 550
           + + + + +   N 
Sbjct: 66  LDSPDETEDPEPNY 79

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 49.6 bits (118), Expect = 5e-07
 Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 3/79 (3%)

Query: 205 PAFARVKQVRVPNAYDKTA---LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEF 261
           P F  ++  R    Y+KT+   + L  GD+++V + + +G W  ++  K G  P + +E 
Sbjct: 6   PEFIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEP 65

Query: 262 IPTNETMPFHSSMKMTGTF 280
           + + +             +
Sbjct: 66  LDSPDETEDPEPNYAGEPY 84

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 99.1 bits (247), Expect = 3e-22
 Identities = 51/237 (21%), Positives = 89/237 (37%), Gaps = 33/237 (13%)

Query: 184 SHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNA-YDKTA-----LKLEIGDIIKVTKT 237
           +     Q  +   + + +  L A        +  A YD  A     L +  G+ ++V   
Sbjct: 14  ASDFEPQGLSEAARWNSKENLLAGPSENDPNLFVALYDFVASGDNTLSITKGEKLRVLGY 73

Query: 238 NINGQW-EGELNGKTGHFPFTHVEFIPTNETMPFHSSMKMTGTFDPHDRNSWYFGMMTRQ 296
           N NG+W E +     G  P  ++  + + E                     WY G ++R 
Sbjct: 74  NHNGEWCEAQTKNGQGWVPSNYITPVNSLEKHS------------------WYHGPVSRN 115

Query: 297 EAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKT 356
            A+  LLS   NG+FLVR+S +  G   + ++   +V HY IN  ++      Y   +  
Sbjct: 116 AAEY-LLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD---GKLYVSSESR 171

Query: 357 FSDLPSLLAFYKVHYLD-TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIV 412
           F+ L  L+  +        + L  PA K  +  I        + D    ++ DI + 
Sbjct: 172 FNTLAELVHHHSTVADGLITTLHYPAPKRNKPTIYG---VSPNYDKWEMERTDITMK 225

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 87.1 bits (216), Expect = 2e-18
 Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 8/126 (6%)

Query: 13  WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
           WY G ++R  A+  LLS   NG+FLVR+S +  G   + ++   +V HY IN  ++    
Sbjct: 107 WYHGPVSRNAAEY-LLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD---G 162

Query: 73  TCYKIGDKTFSDLPSLLAFYKVHYLD-TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKK 131
             Y   +  F+ L  L+  +        + L  PA K  +  I        + D    ++
Sbjct: 163 KLYVSSESRFNTLAELVHHHSTVADGLITTLHYPAPKRNKPTIYG---VSPNYDKWEMER 219

Query: 132 NDILIV 137
            DI + 
Sbjct: 220 TDITMK 225

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 68.3 bits (167), Expect = 2e-12
 Identities = 14/69 (20%), Positives = 25/69 (36%)

Query: 99  TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSI 158
            + L  P+       +A YDF  +  + L   K + L V+  +    W         G +
Sbjct: 32  ENLLAGPSENDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWV 91

Query: 159 PVPYVQKYS 167
           P  Y+   +
Sbjct: 92  PSNYITPVN 100

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 68.3 bits (167), Expect = 2e-12
 Identities = 14/69 (20%), Positives = 25/69 (36%)

Query: 374 TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSI 433
            + L  P+       +A YDF  +  + L   K + L V+  +    W         G +
Sbjct: 32  ENLLAGPSENDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWV 91

Query: 434 PVPYVQKYS 442
           P  Y+   +
Sbjct: 92  PSNYITPVN 100

>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_A 3t04_A 1ab2_A Length = 112

 Score = 90.4 bits (225), Expect = 5e-22
 Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 9  DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 68
          +++SWY G ++R  A+  LLS   NG+FLVR+S +  G   + ++   +V HY   +I  
Sbjct: 3  EKHSWYHGPVSRNAAEY-LLSSGINGSFLVRESESSPGQRSISLRYEGRVYHY---RINT 58

Query: 69 TEQQTCYKIGDKTFSDLPSLLAFYKVH 95
                Y   +  F+ L  L+  +   
Sbjct: 59 ASDGKLYVSSESRFNTLAELVHHHSTV 85

>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_A 3t04_A 1ab2_A Length = 112

 Score = 90.4 bits (225), Expect = 5e-22
 Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 284 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 343
           +++SWY G ++R  A+  LLS   NG+FLVR+S +  G   + ++   +V HY   +I  
Sbjct: 3   EKHSWYHGPVSRNAAEY-LLSSGINGSFLVRESESSPGQRSISLRYEGRVYHY---RINT 58

Query: 344 TEQQTCYKIGDKTFSDLPSLLAFYKVH 370
                 Y   +  F+ L  L+  +   
Sbjct: 59  ASDGKLYVSSESRFNTLAELVHHHSTV 85

>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70, tyrosine kinase, transferase; HET: PTR; 1.90A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A Length = 254

 Score = 94.6 bits (235), Expect = 5e-22
 Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 4/91 (4%)

Query: 6  DPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 64
          DP     +++G ++R EA+  L      +G FL+R     LG YVL +  + +  H+   
Sbjct: 1  DPAAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHF--- 57

Query: 65 KITNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
           I      T    G K       L  FY   
Sbjct: 58 PIERQLNGTYAIAGGKAHCGPAELCEFYSRD 88

>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70, tyrosine kinase, transferase; HET: PTR; 1.90A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A Length = 254

 Score = 94.6 bits (235), Expect = 5e-22
 Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 4/91 (4%)

Query: 281 DPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 339
           DP     +++G ++R EA+  L      +G FL+R     LG YVL +  + +  H+   
Sbjct: 1   DPAAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHF--- 57

Query: 340 KITNTEQQTCYKIGDKTFSDLPSLLAFYKVH 370
            I      T    G K       L  FY   
Sbjct: 58  PIERQLNGTYAIAGGKAHCGPAELCEFYSRD 88

>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70, tyrosine kinase, transferase; HET: PTR; 1.90A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A Length = 254

 Score = 85.0 bits (210), Expect = 1e-18
 Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 7/120 (5%)

Query: 253 HFPFTHVEFIPTNETMPFHSSMKMTGTFDPHDRNSWYFGMMTRQEAQAILLSE-KDNGAF 311
              +           +     ++       H+R  WY   +TR+EA+  L S  + +G F
Sbjct: 126 RQTWKLEGEALEQAIISQAPQVEKLIATTAHERMPWYHSSLTREEAERKLYSGAQTDGKF 185

Query: 312 LVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDK-TFSDLPSLLAFYKVH 370
           L+R      G Y L +     V HY+I++    ++   Y I +   F  L  L+ + K+ 
Sbjct: 186 LLRPRKE-QGTYALSLIYGKTVYHYLISQ----DKAGKYCIPEGTKFDTLWQLVEYLKLK 240

>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70, tyrosine kinase, transferase; HET: PTR; 1.90A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A Length = 254

 Score = 82.6 bits (204), Expect = 7e-18
 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 7/97 (7%)

Query: 1   MTGTFDPHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVS 59
                  H+R  WY   +TR+EA+  L S  + +G FL+R      G Y L +     V 
Sbjct: 149 KLIATTAHERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRKE-QGTYALSLIYGKTVY 207

Query: 60  HYIINKITNTEQQTCYKIGDK-TFSDLPSLLAFYKVH 95
           HY+I++    ++   Y I +   F  L  L+ + K+ 
Sbjct: 208 HYLISQ----DKAGKYCIPEGTKFDTLWQLVEYLKLK 240

>2eob_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 2; SH2, phosphoinositide phospholipase C, PLC-gamma-2, phospholipase C-gamma-2; NMR {Rattus norvegicus} Length = 124

 Score = 90.4 bits (225), Expect = 7e-22
 Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 10/109 (9%)

Query: 6   DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
           +PH+   WY+  ++R EA+ +L+    +GAFL+R       +Y +  +   KV H  IN+
Sbjct: 14  NPHESKPWYYDRLSRGEAEDMLMRIPRDGAFLIRKREGT-DSYAITFRARGKVKHCRINR 72

Query: 66  ITNTEQQTCYKIGDK-TFSDLPSLLAFYKVH--YLDTSPLIKPATKTIE 111
                    + +G    F  L  L+++Y+ H  Y     L  P T  + 
Sbjct: 73  -----DGRHFVLGTSAYFESLVELVSYYEKHALYRKMR-LRYPVTPELL 115

>2eob_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 2; SH2, phosphoinositide phospholipase C, PLC-gamma-2, phospholipase C-gamma-2; NMR {Rattus norvegicus} Length = 124

 Score = 90.4 bits (225), Expect = 7e-22
 Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 10/109 (9%)

Query: 281 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 340
           +PH+   WY+  ++R EA+ +L+    +GAFL+R       +Y +  +   KV H  IN+
Sbjct: 14  NPHESKPWYYDRLSRGEAEDMLMRIPRDGAFLIRKREGT-DSYAITFRARGKVKHCRINR 72

Query: 341 ITNTEQQTCYKIGDK-TFSDLPSLLAFYKVH--YLDTSPLIKPATKTIE 386
                    + +G    F  L  L+++Y+ H  Y     L  P T  + 
Sbjct: 73  -----DGRHFVLGTSAYFESLVELVSYYEKHALYRKMR-LRYPVTPELL 115

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A Length = 71

 Score = 87.7 bits (218), Expect = 1e-21
 Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 106 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSK--DEEHWWTAQNISGEVGSIPVPYV 163
            ++ +  V   Y F     ++L F+K + + V+ K  ++  WW  +N  G+VG +P  YV
Sbjct: 2   GSRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYV 61

Query: 164 QKYSEGMSI 172
              S+G ++
Sbjct: 62  VVLSDGPAL 70

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A Length = 71

 Score = 87.7 bits (218), Expect = 1e-21
 Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 381 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSK--DEEHWWTAQNISGEVGSIPVPYV 438
            ++ +  V   Y F     ++L F+K + + V+ K  ++  WW  +N  G+VG +P  YV
Sbjct: 2   GSRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYV 61

Query: 439 QKYSEGMSI 447
              S+G ++
Sbjct: 62  VVLSDGPAL 70

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A Length = 71

 Score = 37.3 bits (87), Expect = 8e-04
 Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 8/58 (13%)

Query: 219 YDKTA-----LKLEIGDIIKV-TKTNINGQW-EGE-LNGKTGHFPFTHVEFIPTNETM 268
           Y  ++     L  E G+ ++V  K   + +W + +   G+ G  P  +V  +     +
Sbjct: 13  YPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDGPAL 70

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1 Length = 71

 Score = 87.3 bits (217), Expect = 1e-21
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 103 IKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSK-DEEHWWTAQNISGEVGSIPVP 161
           I+ +  +  + IAKY+F G    DLPF K D+L +V+   + +W+ A+N  G  G IP  
Sbjct: 4   IQASWPSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPAN 63

Query: 162 YVQKY 166
           YVQK 
Sbjct: 64  YVQKR 68

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1 Length = 71

 Score = 87.3 bits (217), Expect = 1e-21
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 378 IKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSK-DEEHWWTAQNISGEVGSIPVP 436
           I+ +  +  + IAKY+F G    DLPF K D+L +V+   + +W+ A+N  G  G IP  
Sbjct: 4   IQASWPSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPAN 63

Query: 437 YVQKY 441
           YVQK 
Sbjct: 64  YVQKR 68

>2c9w_A Suppressor of cytokine signaling 2; growth regulation, SH2 domain, signal transduction inhibitor nuclear protein; 1.9A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1 Length = 169

 Score = 90.3 bits (224), Expect = 2e-21
 Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 4/120 (3%)

Query: 272 SSMKMTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENN 331
            + ++        +  WY+G MT  EA+  L    + G FL+RDS+       + VK + 
Sbjct: 3   QAARLAKALRELGQTGWYWGSMTVNEAKEKLKEAPE-GTFLIRDSSHSDYLLTISVKTSA 61

Query: 332 KVSHYIINKITNT---EQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKV 388
             ++  I         +   C K   K F  +  L+ +Y     D     +        +
Sbjct: 62  GPTNLRIEYQDGKFRLDSIICVKSKLKQFDSVVHLIDYYVQMCKDKRTGPEAPRNGTVHL 121

>2c9w_A Suppressor of cytokine signaling 2; growth regulation, SH2 domain, signal transduction inhibitor nuclear protein; 1.9A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1 Length = 169

 Score = 89.9 bits (223), Expect = 3e-21
 Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 4/116 (3%)

Query: 1   MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
           +        +  WY+G MT  EA+  L    + G FL+RDS+       + VK +   ++
Sbjct: 7   LAKALRELGQTGWYWGSMTVNEAKEKLKEAPE-GTFLIRDSSHSDYLLTISVKTSAGPTN 65

Query: 61  YIINKITNT---EQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKV 113
             I         +   C K   K F  +  L+ +Y     D     +        +
Sbjct: 66  LRIEYQDGKFRLDSIICVKSKLKQFDSVVHLIDYYVQMCKDKRTGPEAPRNGTVHL 121

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1 Length = 67

 Score = 86.9 bits (216), Expect = 2e-21
 Identities = 20/58 (34%), Positives = 30/58 (51%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
           E V+A YDF   +  DL  ++    I++ K++ HWW A++  G  G IP  YV     
Sbjct: 3   EIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKKS 60

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1 Length = 67

 Score = 86.9 bits (216), Expect = 2e-21
 Identities = 20/58 (34%), Positives = 30/58 (51%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 443
           E V+A YDF   +  DL  ++    I++ K++ HWW A++  G  G IP  YV     
Sbjct: 3   EIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKKS 60

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A Length = 73

 Score = 86.3 bits (214), Expect = 4e-21
 Identities = 24/66 (36%), Positives = 33/66 (50%)

Query: 478 KLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 537
                ARV     P+ YD  +LKL+ GDII +      G W G LN K G F F +V+ +
Sbjct: 7   GFCGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDVL 66

Query: 538 PTNETS 543
            +  +S
Sbjct: 67  SSGPSS 72

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A Length = 73

 Score = 84.4 bits (209), Expect = 2e-20
 Identities = 23/65 (35%), Positives = 32/65 (49%)

Query: 203 KLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
                ARV     P+ YD  +LKL+ GDII +      G W G LN K G F F +V+ +
Sbjct: 7   GFCGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDVL 66

Query: 263 PTNET 267
            +  +
Sbjct: 67  SSGPS 71

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A Length = 73

 Score = 59.3 bits (144), Expect = 1e-11
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG 169
           +V   +     D D L  KK DI+ ++SK     W    ++ +VG+    YV   S G
Sbjct: 13  RVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGL-LNNKVGTFKFIYVDVLSSG 69

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A Length = 73

 Score = 59.3 bits (144), Expect = 1e-11
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG 444
           +V   +     D D L  KK DI+ ++SK     W    ++ +VG+    YV   S G
Sbjct: 13  RVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGL-LNNKVGTFKFIYVDVLSSG 69

>3s9k_A Tyrosine-protein kinase ITK/TSK; proline isomerization, CIS proline, domain swapped dimer, SH transferase; HET: CIT; 2.35A {Mus musculus} PDB: 2etz_A* 2eu0_A* 1lui_A 1luk_A 1lum_A 1lun_A 2k79_B 2k7a_B Length = 118

 Score = 87.8 bits (218), Expect = 5e-21
 Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 11/114 (9%)

Query: 3   GTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVK------ENN 56
           G+ +  +   WY   ++R +A+ +LL     GAF+VRDS T  G Y + V       EN 
Sbjct: 1   GSPNNLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRT-PGTYTVSVFTKAIISENP 59

Query: 57  KVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 108
            + HY I K TN   +  Y      F  +P L+ +++ +   L T  L  P   
Sbjct: 60  CIKHYHI-KETNDSPKRYYVAEKYVFDSIPLLIQYHQYNGGGLVT-RLRYPVCG 111

>3s9k_A Tyrosine-protein kinase ITK/TSK; proline isomerization, CIS proline, domain swapped dimer, SH transferase; HET: CIT; 2.35A {Mus musculus} PDB: 2etz_A* 2eu0_A* 1lui_A 1luk_A 1lum_A 1lun_A 2k79_B 2k7a_B Length = 118

 Score = 87.8 bits (218), Expect = 5e-21
 Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 11/114 (9%)

Query: 278 GTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVK------ENN 331
           G+ +  +   WY   ++R +A+ +LL     GAF+VRDS T  G Y + V       EN 
Sbjct: 1   GSPNNLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRT-PGTYTVSVFTKAIISENP 59

Query: 332 KVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 383
            + HY I K TN   +  Y      F  +P L+ +++ +   L T  L  P   
Sbjct: 60  CIKHYHI-KETNDSPKRYYVAEKYVFDSIPLLIQYHQYNGGGLVT-RLRYPVCG 111

>3gqi_B Phospholipase C-gamma-1; phosphorylated kinase, PY-recognition, tandem SH2 domains, A analog, ATP-binding, craniosynostosis, disease mutation; HET: PTR DVT ACP; 2.50A {Rattus norvegicus} PDB: 2fci_A* 2pld_A* 2ple_A* Length = 226

 Score = 91.1 bits (226), Expect = 5e-21
 Identities = 31/140 (22%), Positives = 58/140 (41%), Gaps = 7/140 (5%)

Query: 257 THVEFIPTNETMPFHSSMKMTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDS 316
           TH + +P           +     + H+   WY   +TR +A+ +L+    +GAFLVR  
Sbjct: 93  THYQQVPLRCNEFEMRLSEPVPQTNAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKR 152

Query: 317 NTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYL-DTS 375
           N    +Y +  +   K+ H  + +     +     +G+  F  L  L+++Y+ H L    
Sbjct: 153 NEP-NSYAISFRAEGKIKHCRVQQ-----EGQTVMLGNSEFDSLVDLISYYEKHPLYRKM 206

Query: 376 PLIKPATKTIEKVIAKYDFD 395
            L  P  +   + I   + D
Sbjct: 207 KLRYPINEEALEKIGTAEPD 226

>3gqi_B Phospholipase C-gamma-1; phosphorylated kinase, PY-recognition, tandem SH2 domains, A analog, ATP-binding, craniosynostosis, disease mutation; HET: PTR DVT ACP; 2.50A {Rattus norvegicus} PDB: 2fci_A* 2pld_A* 2ple_A* Length = 226

 Score = 90.7 bits (225), Expect = 6e-21
 Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 7/117 (5%)

Query: 5   FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 64
            + H+   WY   +TR +A+ +L+    +GAFLVR  N    +Y +  +   K+ H  + 
Sbjct: 116 TNAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEP-NSYAISFRAEGKIKHCRVQ 174

Query: 65  KITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYL-DTSPLIKPATKTIEKVIAKYDFD 120
           +     +     +G+  F  L  L+++Y+ H L     L  P  +   + I   + D
Sbjct: 175 Q-----EGQTVMLGNSEFDSLVDLISYYEKHPLYRKMKLRYPINEEALEKIGTAEPD 226

>3gqi_B Phospholipase C-gamma-1; phosphorylated kinase, PY-recognition, tandem SH2 domains, A analog, ATP-binding, craniosynostosis, disease mutation; HET: PTR DVT ACP; 2.50A {Rattus norvegicus} PDB: 2fci_A* 2pld_A* 2ple_A* Length = 226

 Score = 84.6 bits (209), Expect = 7e-19
 Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 10/105 (9%)

Query: 8   HDRNSWYFGMMT-----RQEAQAILLSE-----KDNGAFLVRDSNTILGNYVLCVKENNK 57
           H    W+ G +      R  A+ +L          +G+FLVR+S T +G+Y L    N K
Sbjct: 1   HSSEKWFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGK 60

Query: 58  VSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPL 102
           V H  I+   +      +   +  F  L  L+  Y+   L  +  
Sbjct: 61  VQHCRIHSRQDAGTPKFFLTDNLVFDSLYDLITHYQQVPLRCNEF 105

>3gqi_B Phospholipase C-gamma-1; phosphorylated kinase, PY-recognition, tandem SH2 domains, A analog, ATP-binding, craniosynostosis, disease mutation; HET: PTR DVT ACP; 2.50A {Rattus norvegicus} PDB: 2fci_A* 2pld_A* 2ple_A* Length = 226

 Score = 84.6 bits (209), Expect = 7e-19
 Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 10/105 (9%)

Query: 283 HDRNSWYFGMMT-----RQEAQAILLSE-----KDNGAFLVRDSNTILGNYVLCVKENNK 332
           H    W+ G +      R  A+ +L          +G+FLVR+S T +G+Y L    N K
Sbjct: 1   HSSEKWFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGK 60

Query: 333 VSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPL 377
           V H  I+   +      +   +  F  L  L+  Y+   L  +  
Sbjct: 61  VQHCRIHSRQDAGTPKFFLTDNLVFDSLYDLITHYQQVPLRCNEF 105

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A Length = 77

 Score = 85.9 bits (213), Expect = 7e-21
 Identities = 19/63 (30%), Positives = 30/63 (47%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
                   VIA YD+  NDP +L  + ++   ++   E HWW  Q+ +G  G  P  Y+ 
Sbjct: 15  FQEPEETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLV 74

Query: 165 KYS 167
           + S
Sbjct: 75  EKS 77

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A Length = 77

 Score = 85.9 bits (213), Expect = 7e-21
 Identities = 19/63 (30%), Positives = 30/63 (47%)

Query: 380 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
                   VIA YD+  NDP +L  + ++   ++   E HWW  Q+ +G  G  P  Y+ 
Sbjct: 15  FQEPEETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLV 74

Query: 440 KYS 442
           + S
Sbjct: 75  EKS 77

>2dx0_A Phospholipase C, gamma 2; phosphoric diester hydrolase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Mus musculus} Length = 138

 Score = 87.6 bits (217), Expect = 8e-21
 Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 6/104 (5%)

Query: 6   DPHDRNSWYFG-MMTRQEAQAILLSEKD-----NGAFLVRDSNTILGNYVLCVKENNKVS 59
           + H    W+   + +R  A+ +L          +G FLVR+S T   +Y L    + +V 
Sbjct: 17  ELHFGEKWFHKKVESRTSAEKLLQEYCAETGAKDGTFLVRESETFPNDYTLSFWRSGRVQ 76

Query: 60  HYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLI 103
           H  I           Y   + TF+ + +L+  Y+  +L  +   
Sbjct: 77  HCRIRSTMENGVMKYYLTDNLTFNSIYALIQHYREAHLRCAEFE 120

>2dx0_A Phospholipase C, gamma 2; phosphoric diester hydrolase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Mus musculus} Length = 138

 Score = 87.6 bits (217), Expect = 8e-21
 Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 6/104 (5%)

Query: 281 DPHDRNSWYFG-MMTRQEAQAILLSEKD-----NGAFLVRDSNTILGNYVLCVKENNKVS 334
           + H    W+   + +R  A+ +L          +G FLVR+S T   +Y L    + +V 
Sbjct: 17  ELHFGEKWFHKKVESRTSAEKLLQEYCAETGAKDGTFLVRESETFPNDYTLSFWRSGRVQ 76

Query: 335 HYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLI 378
           H  I           Y   + TF+ + +L+  Y+  +L  +   
Sbjct: 77  HCRIRSTMENGVMKYYLTDNLTFNSIYALIQHYREAHLRCAEFE 120

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 85.9 bits (213), Expect = 9e-21
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
             VIA YD+  NDP +L  ++N+   ++   E HWW  Q+ +G  G +P  Y+ + S 
Sbjct: 20  TVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVEKSP 77

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 85.9 bits (213), Expect = 9e-21
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 443
             VIA YD+  NDP +L  ++N+   ++   E HWW  Q+ +G  G +P  Y+ + S 
Sbjct: 20  TVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVEKSP 77

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 91

 Score = 86.0 bits (213), Expect = 9e-21
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 2/74 (2%)

Query: 98  DTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEE--HWWTAQNISGEV 155
            +       ++ +  V   Y F     ++L F+K + + V+ K E    WW  +N  G+V
Sbjct: 5   SSGLSNGQGSRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQV 64

Query: 156 GSIPVPYVQKYSEG 169
           G +P  YV   S+G
Sbjct: 65  GLVPKNYVVVLSDG 78

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 91

 Score = 86.0 bits (213), Expect = 9e-21
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 2/74 (2%)

Query: 373 DTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEE--HWWTAQNISGEV 430
            +       ++ +  V   Y F     ++L F+K + + V+ K E    WW  +N  G+V
Sbjct: 5   SSGLSNGQGSRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQV 64

Query: 431 GSIPVPYVQKYSEG 444
           G +P  YV   S+G
Sbjct: 65  GLVPKNYVVVLSDG 78

>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2 domain; HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1csy_A* 1csz_A* Length = 254

 Score = 90.4 bits (224), Expect = 1e-20
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 4/84 (4%)

Query: 13 WYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 71
          ++FG +TR+EA+  L+     +G +L+R S   LG + L V    K  HY    I     
Sbjct: 7  FFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHY---TIERELN 63

Query: 72 QTCYKIGDKTFSDLPSLLAFYKVH 95
           T    G +T +    L  ++   
Sbjct: 64 GTYAIAGGRTHASPADLCHYHSQE 87

>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2 domain; HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1csy_A* 1csz_A* Length = 254

 Score = 90.4 bits (224), Expect = 1e-20
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 4/84 (4%)

Query: 288 WYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 346
           ++FG +TR+EA+  L+     +G +L+R S   LG + L V    K  HY    I     
Sbjct: 7   FFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHY---TIERELN 63

Query: 347 QTCYKIGDKTFSDLPSLLAFYKVH 370
            T    G +T +    L  ++   
Sbjct: 64  GTYAIAGGRTHASPADLCHYHSQE 87

>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2 domain; HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1csy_A* 1csz_A* Length = 254

 Score = 83.8 bits (207), Expect = 2e-18
 Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 8/122 (6%)

Query: 265 NETMPFHSSMKMTGTFDPHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNY 323
              +     ++       H++  W+ G ++R+E++ I+L   K NG FL+R  +   G+Y
Sbjct: 137 QAIISQKPQLEKLIATTAHEKMPWFHGKISREESEQIVLIGSKTNGKFLIRARDNN-GSY 195

Query: 324 VLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPA 381
            LC+    KV HY I+K    +         K F  L  L+  Y      L    L  P 
Sbjct: 196 ALCLLHEGKVLHYRIDK---DKTGKLSIPEGKKFDTLWQLVEHYSYKADGLLR-VLTVPC 251

Query: 382 TK 383
            K
Sbjct: 252 QK 253

>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2 domain; HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1csy_A* 1csz_A* Length = 254

 Score = 83.0 bits (205), Expect = 4e-18
 Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 8/107 (7%)

Query: 5   FDPHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
              H++  W+ G ++R+E++ I+L   K NG FL+R  +   G+Y LC+    KV HY I
Sbjct: 152 TTAHEKMPWFHGKISREESEQIVLIGSKTNGKFLIRARDNN-GSYALCLLHEGKVLHYRI 210

Query: 64  NKITNTEQQTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 108
           +K    +         K F  L  L+  Y      L    L  P  K
Sbjct: 211 DK---DKTGKLSIPEGKKFDTLWQLVEHYSYKADGLLR-VLTVPCQK 253

>1blj_A P55 BLK protein tyrosine kinase; signal transduction, transferase, phosphotransferase, phosphorylation; NMR {Mus musculus} SCOP: d.93.1.1 PDB: 1blk_A Length = 114

 Score = 85.9 bits (213), Expect = 2e-20
 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 15/112 (13%)

Query: 6   DPHDRNSWYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVK----ENNKVSH 60
           +  +   W+F  ++R++A+  LL+  +  G+FL+R+S +  G + L VK    +   V H
Sbjct: 7   ETLEVEKWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEVVKH 66

Query: 61  YIINKITNTEQQTCYKIGDKTFSDLPSLLAFYK------VHYLDTSPLIKPA 106
           Y   KI + +    Y     TF  L +L+  Y          L T P +  A
Sbjct: 67  Y---KIRSLDNGGYYISPRITFPTLQALVQHYSKKGDGLCQKL-TLPCVNLA 114

>1blj_A P55 BLK protein tyrosine kinase; signal transduction, transferase, phosphotransferase, phosphorylation; NMR {Mus musculus} SCOP: d.93.1.1 PDB: 1blk_A Length = 114

 Score = 85.9 bits (213), Expect = 2e-20
 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 15/112 (13%)

Query: 281 DPHDRNSWYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVK----ENNKVSH 335
           +  +   W+F  ++R++A+  LL+  +  G+FL+R+S +  G + L VK    +   V H
Sbjct: 7   ETLEVEKWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEVVKH 66

Query: 336 YIINKITNTEQQTCYKIGDKTFSDLPSLLAFYK------VHYLDTSPLIKPA 381
           Y   KI + +    Y     TF  L +L+  Y          L T P +  A
Sbjct: 67  Y---KIRSLDNGGYYISPRITFPTLQALVQHYSKKGDGLCQKL-TLPCVNLA 114

>2izv_A Suppressor of cytokine signaling 4; signal transduction inhibitor, growth regulation, signal transduction, SH2 domain, nuclear protein; 2.55A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1 Length = 187

 Score = 86.9 bits (215), Expect = 5e-20
 Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 13/146 (8%)

Query: 269 PFHSSMKMTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVK 328
             +    +       + N  Y+G+M +  A+A+L  + + G FL+RDS      + +  +
Sbjct: 17  NLYFQSMLVPDLLQINNNPCYWGVMDKYAAEALLEGKPE-GTFLLRDSAQEDYLFSVSFR 75

Query: 329 ENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVH-------YLDTSPLIKPA 381
             ++  H  I +  +      +        D+  LL  YK          L ++PLI+  
Sbjct: 76  RYSRSLHARIEQWNHNFSFDAHDPCVFHSPDITGLLEHYKDPSACMFFEPLLSTPLIRTF 135

Query: 382 TKTIE----KVIAKYDFDGNDPDDLP 403
             +++     VI       +  D LP
Sbjct: 136 PFSLQHICRTVICNC-TTYDGIDALP 160

>2izv_A Suppressor of cytokine signaling 4; signal transduction inhibitor, growth regulation, signal transduction, SH2 domain, nuclear protein; 2.55A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1 Length = 187

 Score = 86.5 bits (214), Expect = 7e-20
 Identities = 29/136 (21%), Positives = 54/136 (39%), Gaps = 13/136 (9%)

Query: 4   TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
                + N  Y+G+M +  A+A+L  + + G FL+RDS      + +  +  ++  H  I
Sbjct: 27  DLLQINNNPCYWGVMDKYAAEALLEGKPE-GTFLLRDSAQEDYLFSVSFRRYSRSLHARI 85

Query: 64  NKITNTEQQTCYKIGDKTFSDLPSLLAFYKVH-------YLDTSPLIKPATKTIE----K 112
            +  +      +        D+  LL  YK          L ++PLI+    +++     
Sbjct: 86  EQWNHNFSFDAHDPCVFHSPDITGLLEHYKDPSACMFFEPLLSTPLIRTFPFSLQHICRT 145

Query: 113 VIAKYDFDGNDPDDLP 128
           VI       +  D LP
Sbjct: 146 VICNC-TTYDGIDALP 160

>1aot_F FYN protein-tyrosine kinase; SH2 domain, signal transduction, peptide complex, complex (proto-oncogene/early protein); HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1aou_F* Length = 106

 Score = 83.8 bits (208), Expect = 8e-20
 Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 12/104 (11%)

Query: 13  WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK-----ENNKVSHYIINKI 66
           WYFG + R++A+  LLS     G FL+R+S T  G Y L ++     + + V HY   KI
Sbjct: 7   WYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHY---KI 63

Query: 67  TNTEQQTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 108
              +    Y      F  L  L+  Y      L +  L+ P+ K
Sbjct: 64  RKLDNGGYYITTRAQFETLQQLVQHYSERAAGLSS-RLVVPSHK 106

>1aot_F FYN protein-tyrosine kinase; SH2 domain, signal transduction, peptide complex, complex (proto-oncogene/early protein); HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1aou_F* Length = 106

 Score = 83.8 bits (208), Expect = 8e-20
 Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 12/104 (11%)

Query: 288 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK-----ENNKVSHYIINKI 341
           WYFG + R++A+  LLS     G FL+R+S T  G Y L ++     + + V HY   KI
Sbjct: 7   WYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHY---KI 63

Query: 342 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 383
              +    Y      F  L  L+  Y      L +  L+ P+ K
Sbjct: 64  RKLDNGGYYITTRAQFETLQQLVQHYSERAAGLSS-RLVVPSHK 106

>2ge9_A Tyrosine-protein kinase BTK; SH2 domain, structure, transferase; NMR {Homo sapiens} Length = 125

 Score = 84.3 bits (209), Expect = 1e-19
 Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 13/112 (11%)

Query: 6   DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVK------ENNKVS 59
           D  +   WY   MTR +A+ +L  E   G F+VRDS+   G Y + V           + 
Sbjct: 6   DSIEMYEWYSKHMTRSQAEQLLKQEGKEGGFIVRDSSK-AGKYTVSVFAKSTGDPQGVIR 64

Query: 60  HYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATKT 109
           HY    + +T Q   Y      FS +P L+ +++ +   L +  L  P ++ 
Sbjct: 65  HY---VVCSTPQSQYYLAEKHLFSTIPELINYHQHNSAGLIS-RLKYPVSQQ 112

>2ge9_A Tyrosine-protein kinase BTK; SH2 domain, structure, transferase; NMR {Homo sapiens} Length = 125

 Score = 84.3 bits (209), Expect = 1e-19
 Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 13/112 (11%)

Query: 281 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVK------ENNKVS 334
           D  +   WY   MTR +A+ +L  E   G F+VRDS+   G Y + V           + 
Sbjct: 6   DSIEMYEWYSKHMTRSQAEQLLKQEGKEGGFIVRDSSK-AGKYTVSVFAKSTGDPQGVIR 64

Query: 335 HYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATKT 384
           HY    + +T Q   Y      FS +P L+ +++ +   L +  L  P ++ 
Sbjct: 65  HY---VVCSTPQSQYYLAEKHLFSTIPELINYHQHNSAGLIS-RLKYPVSQQ 112

>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 125

 Score = 83.9 bits (208), Expect = 1e-19
 Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 13/111 (11%)

Query: 6   DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCV------KENNKVS 59
              +   WY   +TR +A+ +L  E   GAF+VRDS   LG+Y + V           + 
Sbjct: 11  TNLEIYEWYHRNITRNQAEHLLRQESKEGAFIVRDSRH-LGSYTISVFMGARRSTEAAIK 69

Query: 60  HYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 108
           HY   +I   +    Y      F  +P L+ +++ +   L T  L  P   
Sbjct: 70  HY---QIKKNDSGQWYVAERHAFQSIPELIWYHQHNAAGLMT-RLRYPVGL 116

>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 125

 Score = 83.9 bits (208), Expect = 1e-19
 Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 13/111 (11%)

Query: 281 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCV------KENNKVS 334
              +   WY   +TR +A+ +L  E   GAF+VRDS   LG+Y + V           + 
Sbjct: 11  TNLEIYEWYHRNITRNQAEHLLRQESKEGAFIVRDSRH-LGSYTISVFMGARRSTEAAIK 69

Query: 335 HYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 383
           HY   +I   +    Y      F  +P L+ +++ +   L T  L  P   
Sbjct: 70  HY---QIKKNDSGQWYVAERHAFQSIPELIWYHQHNAAGLMT-RLRYPVGL 116

>1lkk_A Human P56 tyrosine kinase; complex (tyrosine kinase/peptide); HET: PTR; 1.00A {Homo sapiens} SCOP: d.93.1.1 PDB: 1lcj_A* 1bhf_A* 1bhh_A 1lkl_A* 1bhh_B 1fbz_A* 1ijr_A* 1cwd_L* 1cwe_A* Length = 105

 Score = 83.1 bits (206), Expect = 1e-19
 Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 9/89 (10%)

Query: 13 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNK-----VSHYIINKI 66
          W+F  ++R++A+  LL+    +G+FL+R+S +  G++ L V++ ++     V HY   KI
Sbjct: 6  WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHY---KI 62

Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
           N +    Y     TF  L  L+  Y   
Sbjct: 63 RNLDNGGFYISPRITFPGLHELVRHYTNA 91

>1lkk_A Human P56 tyrosine kinase; complex (tyrosine kinase/peptide); HET: PTR; 1.00A {Homo sapiens} SCOP: d.93.1.1 PDB: 1lcj_A* 1bhf_A* 1bhh_A 1lkl_A* 1bhh_B 1fbz_A* 1ijr_A* 1cwd_L* 1cwe_A* Length = 105

 Score = 83.1 bits (206), Expect = 1e-19
 Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 9/89 (10%)

Query: 288 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNK-----VSHYIINKI 341
           W+F  ++R++A+  LL+    +G+FL+R+S +  G++ L V++ ++     V HY   KI
Sbjct: 6   WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHY---KI 62

Query: 342 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 370
            N +    Y     TF  L  L+  Y   
Sbjct: 63  RNLDNGGFYISPRITFPGLHELVRHYTNA 91

>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens} Length = 110

 Score = 82.7 bits (205), Expect = 2e-19
 Identities = 23/108 (21%), Positives = 48/108 (44%), Gaps = 13/108 (12%)

Query: 6   DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCV------KENNKVS 59
              D   W+ G ++R +++ +L  +   GAF+VR+S+ + G Y + +       +   V 
Sbjct: 6   SGLDDYDWFAGNISRSQSEQLLRQKGKEGAFMVRNSSQV-GMYTVSLFSKAVNDKKGTVK 64

Query: 60  HYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKP 105
           HY    +    +   Y   +  F  +P L+ +++ +   + T  L  P
Sbjct: 65  HY---HVHTNAENKLYLAENYCFDSIPKLIHYHQHNSAGMITR-LRHP 108

>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens} Length = 110

 Score = 82.7 bits (205), Expect = 2e-19
 Identities = 23/108 (21%), Positives = 48/108 (44%), Gaps = 13/108 (12%)

Query: 281 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCV------KENNKVS 334
              D   W+ G ++R +++ +L  +   GAF+VR+S+ + G Y + +       +   V 
Sbjct: 6   SGLDDYDWFAGNISRSQSEQLLRQKGKEGAFMVRNSSQV-GMYTVSLFSKAVNDKKGTVK 64

Query: 335 HYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKP 380
           HY    +    +   Y   +  F  +P L+ +++ +   + T  L  P
Sbjct: 65  HY---HVHTNAENKLYLAENYCFDSIPKLIHYHQHNSAGMITR-LRHP 108

>1wqu_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; SH2 domain, feline sarcoma oncogene, structural genomics; NMR {Homo sapiens} PDB: 2dcr_A Length = 114

 Score = 82.8 bits (205), Expect = 2e-19
 Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 9/90 (10%)

Query: 6  DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
           P     WY G + R E   +L     +G FLVR+S      YVL V  +    H+II  
Sbjct: 11 KPLHEQLWYHGAIPRAEVAELL---VHSGDFLVRESQGK-QEYVLSVLWDGLPRHFIIQS 66

Query: 66 ITNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
          + N      Y++  + F  +P L+      
Sbjct: 67 LDN-----LYRLEGEGFPSIPLLIDHLLST 91

>1wqu_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; SH2 domain, feline sarcoma oncogene, structural genomics; NMR {Homo sapiens} PDB: 2dcr_A Length = 114

 Score = 82.8 bits (205), Expect = 2e-19
 Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 9/90 (10%)

Query: 281 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 340
            P     WY G + R E   +L     +G FLVR+S      YVL V  +    H+II  
Sbjct: 11  KPLHEQLWYHGAIPRAEVAELL---VHSGDFLVRESQGK-QEYVLSVLWDGLPRHFIIQS 66

Query: 341 ITNTEQQTCYKIGDKTFSDLPSLLAFYKVH 370
           + N      Y++  + F  +P L+      
Sbjct: 67  LDN-----LYRLEGEGFPSIPLLIDHLLST 91

>2hmh_A Suppressor of cytokine signaling 3; SOCS3, GP130, PTyr, peptide complex, cytokine regulator; HET: PTR; 2.00A {Mus musculus} Length = 152

 Score = 83.9 bits (207), Expect = 3e-19
 Identities = 21/113 (18%), Positives = 38/113 (33%), Gaps = 7/113 (6%)

Query: 262 IPTNETMPFHS---SMKMTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNT 318
             +     F S      +         + +Y+  +T  EA  +L +E   G FL+RDS+ 
Sbjct: 7   DTSLRLKTFSSKSEYQLVVNAVRKLQESGFYWSAVTGGEANLLLSAEPA-GTFLIRDSSD 65

Query: 319 ILGNYVLCVKENNKVSHYIINKITNT---EQQTCYKIGDKTFSDLPSLLAFYK 368
               + L VK  +   +  I     +   +           F  +  L+  Y 
Sbjct: 66  QRHFFTLSVKTQSGTKNLRIQXEGGSFSLQSDPRSTQPVPRFDXVLKLVHHYM 118

>2hmh_A Suppressor of cytokine signaling 3; SOCS3, GP130, PTyr, peptide complex, cytokine regulator; HET: PTR; 2.00A {Mus musculus} Length = 152

 Score = 81.6 bits (201), Expect = 2e-18
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 4/93 (4%)

Query: 4   TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
                  + +Y+  +T  EA  +L +E   G FL+RDS+     + L VK  +   +  I
Sbjct: 27  AVRKLQESGFYWSAVTGGEANLLLSAEPA-GTFLIRDSSDQRHFFTLSVKTQSGTKNLRI 85

Query: 64  NKITNT---EQQTCYKIGDKTFSDLPSLLAFYK 93
                +   +           F  +  L+  Y 
Sbjct: 86  QXEGGSFSLQSDPRSTQPVPRFDXVLKLVHHYM 118

>2bbu_A Suppressor of cytokine signaling 3; SH2 domain, extended SH2 subdomain, PEST motif, protein complex, cytokine regulator; HET: PTR; NMR {Mus musculus} Length = 164

 Score = 84.3 bits (208), Expect = 3e-19
 Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 7/106 (6%)

Query: 269 PFHSSM---KMTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVL 325
            F S      +         + +Y+  +T  EA  +L +E   G FL+RDS+     + L
Sbjct: 3   TFSSKSEYQLVVNAVRKLQESGFYWSAVTGGEANLLLSAEPA-GTFLIRDSSDQRHFFTL 61

Query: 326 CVKENNKVSHYIINKITNT---EQQTCYKIGDKTFSDLPSLLAFYK 368
            VK  +   +  I     +   +           F  +  L+  Y 
Sbjct: 62  SVKTQSGTKNLRIQCEGGSFSLQSDPRSTQPVPRFDCVLKLVHHYM 107

>2bbu_A Suppressor of cytokine signaling 3; SH2 domain, extended SH2 subdomain, PEST motif, protein complex, cytokine regulator; HET: PTR; NMR {Mus musculus} Length = 164

 Score = 83.1 bits (205), Expect = 6e-19
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 4/93 (4%)

Query: 4   TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
                  + +Y+  +T  EA  +L +E   G FL+RDS+     + L VK  +   +  I
Sbjct: 16  AVRKLQESGFYWSAVTGGEANLLLSAEPA-GTFLIRDSSDQRHFFTLSVKTQSGTKNLRI 74

Query: 64  NKITNT---EQQTCYKIGDKTFSDLPSLLAFYK 93
                +   +           F  +  L+  Y 
Sbjct: 75  QCEGGSFSLQSDPRSTQPVPRFDCVLKLVHHYM 107

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 88.9 bits (221), Expect = 5e-19
 Identities = 40/189 (21%), Positives = 64/189 (33%), Gaps = 24/189 (12%)

Query: 224 LKLEIGDIIKVTKTNINGQWEG--ELNGKTGHFPFTHVEFIPTNETMPFHSSMKMTGTFD 281
           L    GD++ +     +  W       G+ G  P  +V+     +     S M       
Sbjct: 28  LPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREGVKAGTKLSLMP------ 81

Query: 282 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI 341
                 W+ G +TR++A+ +L   +  G FLVR+S    G+Y LCV    KV HY I   
Sbjct: 82  ------WFHGKITREQAERLLYPPE-TGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMYH 134

Query: 342 TNTEQQTCYKIGDK-TFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFDGNDPD 400
            +        I ++  F +L  L+  Y         L     K           D     
Sbjct: 135 ASK-----LSIDEEVYFENLMQLVEHYTTD---ADGLCTRLIKPKVMEGTVAAQDEFYRS 186

Query: 401 DLPFKKNDI 409
                  ++
Sbjct: 187 GWALNMKEL 195

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 78.9 bits (195), Expect = 8e-16
 Identities = 30/130 (23%), Positives = 46/130 (35%), Gaps = 10/130 (7%)

Query: 6   DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
                  W+ G +TR++A+ +L   +  G FLVR+S    G+Y LCV    KV HY I  
Sbjct: 75  TKLSLMPWFHGKITREQAERLLYPPE-TGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMY 133

Query: 66  ITNTEQQTCYKIGDK-TFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFDGNDP 124
             +        I ++  F +L  L+  Y         L     K           D    
Sbjct: 134 HASK-----LSIDEEVYFENLMQLVEHYTTD---ADGLCTRLIKPKVMEGTVAAQDEFYR 185

Query: 125 DDLPFKKNDI 134
                   ++
Sbjct: 186 SGWALNMKEL 195

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 67.8 bits (166), Expect = 3e-12
 Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 103 IKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEE-HWWTAQNISGEVGSIPVP 161
           I+ +  +  + IAKY+F G    DLPF K D+L +V+  ++ +W+ A+N  G  G IP  
Sbjct: 4   IQASWPSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPAN 63

Query: 162 YVQKYSEGMSILSL 175
           YVQK     +   L
Sbjct: 64  YVQKREGVKAGTKL 77

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 67.8 bits (166), Expect = 3e-12
 Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 378 IKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEE-HWWTAQNISGEVGSIPVP 436
           I+ +  +  + IAKY+F G    DLPF K D+L +V+  ++ +W+ A+N  G  G IP  
Sbjct: 4   IQASWPSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPAN 63

Query: 437 YVQKYSEGMSILSL 450
           YVQK     +   L
Sbjct: 64  YVQKREGVKAGTKL 77

>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus} Length = 302

 Score = 87.0 bits (215), Expect = 5e-19
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 5/111 (4%)

Query: 265 NETMPFHSSMKMTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYV 324
           NET   +S M+       H+  +WY G + R +A+  +LS K +G FL+R+S+   G Y 
Sbjct: 173 NETEDQYSLMEDEDALPHHEERTWYVGKINRTQAEE-MLSGKRDGTFLIRESSQR-GCYA 230

Query: 325 LCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTS 375
             V  +    H +I +   T     +      +  L  L+  Y+   L   
Sbjct: 231 CSVVVDGDTKHCVIYR---TATGFGFAEPYNLYGSLKELVLHYQHASLVQH 278

>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus} Length = 302

 Score = 86.3 bits (213), Expect = 9e-19
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 5/95 (5%)

Query: 6   DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
             H+  +WY G + R +A+  +LS K +G FL+R+S+   G Y   V  +    H +I +
Sbjct: 189 PHHEERTWYVGKINRTQAEE-MLSGKRDGTFLIRESSQR-GCYACSVVVDGDTKHCVIYR 246

Query: 66  ITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTS 100
              T     +      +  L  L+  Y+   L   
Sbjct: 247 ---TATGFGFAEPYNLYGSLKELVLHYQHASLVQH 278

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 79.7 bits (197), Expect = 1e-18
 Identities = 14/75 (18%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 99  TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE-EHWWTAQ-NISGEVG 156
           +  +         + I K +     P +L F+K D++ ++   E + W+  + + SG+ G
Sbjct: 6   SGRMPTRRWAPGTQCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEG 65

Query: 157 SIPVPYVQKYSEGMS 171
            +    +++ S   S
Sbjct: 66  LLAAGALRERSGPSS 80

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 79.7 bits (197), Expect = 1e-18
 Identities = 14/75 (18%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 374 TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE-EHWWTAQ-NISGEVG 431
           +  +         + I K +     P +L F+K D++ ++   E + W+  + + SG+ G
Sbjct: 6   SGRMPTRRWAPGTQCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEG 65

Query: 432 SIPVPYVQKYSEGMS 446
            +    +++ S   S
Sbjct: 66  LLAAGALRERSGPSS 80

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum} Length = 80

 Score = 79.3 bits (196), Expect = 1e-18
 Identities = 20/64 (31%), Positives = 36/64 (56%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
            + +  +   A  D++ +D   LPFK+NDI+ +  KD+E+ W    ++G+ GS PV +V+
Sbjct: 5   GSPEFAKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVE 64

Query: 165 KYSE 168
               
Sbjct: 65  ILLS 68

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum} Length = 80

 Score = 79.3 bits (196), Expect = 1e-18
 Identities = 20/64 (31%), Positives = 36/64 (56%)

Query: 380 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
            + +  +   A  D++ +D   LPFK+NDI+ +  KD+E+ W    ++G+ GS PV +V+
Sbjct: 5   GSPEFAKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVE 64

Query: 440 KYSE 443
               
Sbjct: 65  ILLS 68

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum} Length = 80

 Score = 53.1 bits (128), Expect = 3e-09
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 217 NAYDKTALKLEIGDIIKVT-KTNINGQWEGELNGKTGHFPFTHVEFIPTNETMP 269
           N  D + L  +  DII +T K   N  + G+LNGK G FP  HVE + ++   P
Sbjct: 20  NVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVEILLSDVPPP 73

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum} Length = 80

 Score = 50.8 bits (122), Expect = 1e-08
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 492 NAYDKTALKLEIGDIIKVT-KTNINGQWEGELNGKTGHFPFTHVEFIPTNE 541
           N  D + L  +  DII +T K   N  + G+LNGK G FP  HVE + ++ 
Sbjct: 20  NVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVEILLSDV 70

>2iug_A Phosphatidylinositol 3-kinase regulatory alpha subunit; transferase, polymorphism, UBL conjugation, phosphorylation, SH2, PI3K, SH2 domain; 1.89A {Homo sapiens} PDB: 2iuh_A* 2iui_A* 1fu5_A* 1fu6_A 1oo3_A 1oo4_A* 2pna_A 2pnb_A Length = 120

 Score = 80.8 bits (200), Expect = 1e-18
 Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 14/123 (11%)

Query: 4   TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNT-ILGNYVLCVKENNKVSHYI 62
                    WY+G ++R+E    L    D G FLVRD++T + G+Y L +++        
Sbjct: 4   NNMSLQNAEWYWGDISREEVNEKLRDTAD-GTFLVRDASTKMHGDYTLTLRKGGNNKLIK 62

Query: 63  INKITNTEQQTCYKIGDK-TFSDLPSLLAFYKVHYLDTS------PLIKPATKTIEKVIA 115
           I       +   Y   D  TFS +  L+  Y+   L          L+ P +K  +  + 
Sbjct: 63  IFH-----RDGKYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQDQVV 117

Query: 116 KYD 118
           K D
Sbjct: 118 KED 120

>2iug_A Phosphatidylinositol 3-kinase regulatory alpha subunit; transferase, polymorphism, UBL conjugation, phosphorylation, SH2, PI3K, SH2 domain; 1.89A {Homo sapiens} PDB: 2iuh_A* 2iui_A* 1fu5_A* 1fu6_A 1oo3_A 1oo4_A* 2pna_A 2pnb_A Length = 120

 Score = 80.8 bits (200), Expect = 1e-18
 Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 14/123 (11%)

Query: 279 TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNT-ILGNYVLCVKENNKVSHYI 337
                    WY+G ++R+E    L    D G FLVRD++T + G+Y L +++        
Sbjct: 4   NNMSLQNAEWYWGDISREEVNEKLRDTAD-GTFLVRDASTKMHGDYTLTLRKGGNNKLIK 62

Query: 338 INKITNTEQQTCYKIGDK-TFSDLPSLLAFYKVHYLDTS------PLIKPATKTIEKVIA 390
           I       +   Y   D  TFS +  L+  Y+   L          L+ P +K  +  + 
Sbjct: 63  IFH-----RDGKYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQDQVV 117

Query: 391 KYD 393
           K D
Sbjct: 118 KED 120

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A Length = 67

 Score = 78.8 bits (195), Expect = 2e-18
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
           VIAK+D+      +L  KKN+ L ++  D + WW  +N +   G +P  YV++  E
Sbjct: 7   VIAKWDYTAQQDQELDIKKNERLWLL-DDSKTWWRVRNAANRTGYVPSNYVERKLE 61

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A Length = 67

 Score = 78.8 bits (195), Expect = 2e-18
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 443
           VIAK+D+      +L  KKN+ L ++  D + WW  +N +   G +P  YV++  E
Sbjct: 7   VIAKWDYTAQQDQELDIKKNERLWLL-DDSKTWWRVRNAANRTGYVPSNYVERKLE 61

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 87.1 bits (216), Expect = 2e-18
 Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 40/191 (20%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQW---EGELNGKTGHFPFTHVEFIPTNETMPF 270
           YD  A     L  + GD + V + +  G+W         K G+ P  +V  + + ET   
Sbjct: 15  YDYEAIHHEDLSFQKGDQMVVLEES--GEWWKARSLATRKEGYIPSNYVARVDSLETEE- 71

Query: 271 HSSMKMTGTFDPHDRNSWYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVK- 328
                            W+F  ++R++A+  LL+  +  G+F++RDS T  G+Y L V+ 
Sbjct: 72  -----------------WFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRD 114

Query: 329 ----ENNKVSHYIINKITNTEQQTCYKIGDK-TFSDLPSLLAFYKVHYLD-TSPLIKPAT 382
               + + V HY I  + N      + I  + TFS L  L+  YK         L  P  
Sbjct: 115 YDPRQGDTVKHYKIRTLDN----GGFYISPRSTFSTLQELVDHYKKGNDGLCQKLSVPCM 170

Query: 383 KTIEKVIAKYD 393
            +  +   + D
Sbjct: 171 SSKPQKPWEKD 181

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 82.4 bits (204), Expect = 7e-17
 Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 12/118 (10%)

Query: 9   DRNSWYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVK-----ENNKVSHYI 62
           +   W+F  ++R++A+  LL+  +  G+F++RDS T  G+Y L V+     + + V HY 
Sbjct: 68  ETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYK 127

Query: 63  INKITNTEQQTCYKIGDK-TFSDLPSLLAFYKVHYLD-TSPLIKPATKTIEKVIAKYD 118
           I  + N      + I  + TFS L  L+  YK         L  P   +  +   + D
Sbjct: 128 IRTLDN----GGFYISPRSTFSTLQELVDHYKKGNDGLCQKLSVPCMSSKPQKPWEKD 181

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQKYS 167
           V+A YD++    +DL F+K D ++V+ +    WW A++++  + G IP  YV +  
Sbjct: 11  VVALYDYEAIHHEDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARVD 65

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQKYS 442
           V+A YD++    +DL F+K D ++V+ +    WW A++++  + G IP  YV +  
Sbjct: 11  VVALYDYEAIHHEDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARVD 65

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens} Length = 72

 Score = 78.5 bits (194), Expect = 2e-18
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
             V+AK+D+      +L  KKN+ L ++  D + WW  +N   + G +P  YV++ +
Sbjct: 8   VVVVAKFDYVAQQEQELDIKKNERLWLL-DDSKSWWRVRNSMNKTGFVPSNYVERKN 63

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens} Length = 72

 Score = 78.5 bits (194), Expect = 2e-18
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 442
             V+AK+D+      +L  KKN+ L ++  D + WW  +N   + G +P  YV++ +
Sbjct: 8   VVVVAKFDYVAQQEQELDIKKNERLWLL-DDSKSWWRVRNSMNKTGFVPSNYVERKN 63

>2eo6_A B-cell linker protein; SH2, cytoplasmic adapter protein, B-cell adapter containing SH2 domain protein; NMR {Mus musculus} Length = 141

 Score = 80.3 bits (198), Expect = 3e-18
 Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 13/119 (10%)

Query: 6   DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGN--YVLCVKENNKVSHYII 63
                  WY G   R+ A+  L     +G+FL+R S+       Y L    N +V +  +
Sbjct: 18  AELLGKPWYAGACDRKSAEEALHRSNKDGSFLIRKSSGHDSKQPYTLVAFFNKRVYNIPV 77

Query: 64  NKITNTEQQTCYKIG-----DKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKY 117
             I  T+Q   Y +G     ++ F  +  ++  ++ + L    LI     T +    KY
Sbjct: 78  RFIEATKQ---YALGKKKNGEEYFGSVVEIVNSHQHNPL---VLIDSQNNTKDSTRLKY 130

>2eo6_A B-cell linker protein; SH2, cytoplasmic adapter protein, B-cell adapter containing SH2 domain protein; NMR {Mus musculus} Length = 141

 Score = 80.3 bits (198), Expect = 3e-18
 Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 13/119 (10%)

Query: 281 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGN--YVLCVKENNKVSHYII 338
                  WY G   R+ A+  L     +G+FL+R S+       Y L    N +V +  +
Sbjct: 18  AELLGKPWYAGACDRKSAEEALHRSNKDGSFLIRKSSGHDSKQPYTLVAFFNKRVYNIPV 77

Query: 339 NKITNTEQQTCYKIG-----DKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKY 392
             I  T+Q   Y +G     ++ F  +  ++  ++ + L    LI     T +    KY
Sbjct: 78  RFIEATKQ---YALGKKKNGEEYFGSVVEIVNSHQHNPL---VLIDSQNNTKDSTRLKY 130

>2vif_A Suppressor of cytokine signalling 6; growth regulation, signal transduction inhibitor, KIT regula phosphotyrosine, signaling protein; HET: PTR; 1.45A {Homo sapiens} Length = 141

 Score = 79.9 bits (197), Expect = 6e-18
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 2/92 (2%)

Query: 4   TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
                 +  WY+G +TR EA+  L +  D G+FLVRDS+       L  + + K  H  I
Sbjct: 17  ELKKLAKQGWYWGPITRWEAEGKLANVPD-GSFLVRDSSDDRYLLSLSFRSHGKTLHTRI 75

Query: 64  NKITNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
              +N       +   +  + +  L+      
Sbjct: 76  EH-SNGRFSFYEQPDVEGHTSIVDLIEHSIGD 106

>2vif_A Suppressor of cytokine signalling 6; growth regulation, signal transduction inhibitor, KIT regula phosphotyrosine, signaling protein; HET: PTR; 1.45A {Homo sapiens} Length = 141

 Score = 79.9 bits (197), Expect = 6e-18
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 2/92 (2%)

Query: 279 TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 338
                 +  WY+G +TR EA+  L +  D G+FLVRDS+       L  + + K  H  I
Sbjct: 17  ELKKLAKQGWYWGPITRWEAEGKLANVPD-GSFLVRDSSDDRYLLSLSFRSHGKTLHTRI 75

Query: 339 NKITNTEQQTCYKIGDKTFSDLPSLLAFYKVH 370
              +N       +   +  + +  L+      
Sbjct: 76  EH-SNGRFSFYEQPDVEGHTSIVDLIEHSIGD 106

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 86.2 bits (213), Expect = 6e-18
 Identities = 30/157 (19%), Positives = 54/157 (34%), Gaps = 6/157 (3%)

Query: 6   DPHDRNSWYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 64
           DP     +++G ++R EA+  L  +   +G FL+R     LG YVL +  + +  H+ I 
Sbjct: 3   DPAAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIE 62

Query: 65  KITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYL-DTSPLIKPATKT-IEKVIAKYDFDGN 122
           +  N    T    G K       L  FY          L KP  +    +          
Sbjct: 63  RQLN---GTYAIAGGKAHCGPAELCEFYSRDPDGLPCNLRKPCNRPSGLEPQPGVFDCLR 119

Query: 123 DPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIP 159
           D     + +    +     E+   +      ++ +  
Sbjct: 120 DAMVRDYVRQTWKLEGEALEQAIISQAPQVEKLIATT 156

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 86.2 bits (213), Expect = 6e-18
 Identities = 30/157 (19%), Positives = 54/157 (34%), Gaps = 6/157 (3%)

Query: 281 DPHDRNSWYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 339
           DP     +++G ++R EA+  L  +   +G FL+R     LG YVL +  + +  H+ I 
Sbjct: 3   DPAAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIE 62

Query: 340 KITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYL-DTSPLIKPATKT-IEKVIAKYDFDGN 397
           +  N    T    G K       L  FY          L KP  +    +          
Sbjct: 63  RQLN---GTYAIAGGKAHCGPAELCEFYSRDPDGLPCNLRKPCNRPSGLEPQPGVFDCLR 119

Query: 398 DPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIP 434
           D     + +    +     E+   +      ++ +  
Sbjct: 120 DAMVRDYVRQTWKLEGEALEQAIISQAPQVEKLIATT 156

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 75.8 bits (186), Expect = 1e-14
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 5/92 (5%)

Query: 6   DPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 64
             H+R  WY   +TR+EA+  L S  + +G FL+R      G Y L +     V HY+I+
Sbjct: 156 TAHERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRKE-QGTYALSLIYGKTVYHYLIS 214

Query: 65  KITNTEQQTCYKIGDKTFSDLPSLLAFYKVHY 96
           +                F  L  L+ + K+  
Sbjct: 215 QDKA---GKYCIPEGTKFDTLWQLVEYLKLKA 243

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 75.8 bits (186), Expect = 1e-14
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 5/92 (5%)

Query: 281 DPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 339
             H+R  WY   +TR+EA+  L S  + +G FL+R      G Y L +     V HY+I+
Sbjct: 156 TAHERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRKE-QGTYALSLIYGKTVYHYLIS 214

Query: 340 KITNTEQQTCYKIGDKTFSDLPSLLAFYKVHY 371
           +                F  L  L+ + K+  
Sbjct: 215 QDKA---GKYCIPEGTKFDTLWQLVEYLKLKA 243

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 84.6 bits (210), Expect = 7e-18
 Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 12/104 (11%)

Query: 13  WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
           WY G + R E   +L+     G FLVR+S      YVL V  +    H+II  + N    
Sbjct: 15  WYHGAIPRAEVAELLVHS---GDFLVRESQG-KQEYVLSVLWDGLPRHFIIQSLDN---- 66

Query: 73  TCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAK 116
             Y++  + F  +P L+           PL K +   + + + K
Sbjct: 67  -LYRLEGEGFPSIPLLIDHLLSTQQ---PLTKKSGVVLHRAVPK 106

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 84.6 bits (210), Expect = 7e-18
 Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 12/104 (11%)

Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 347
           WY G + R E   +L+     G FLVR+S      YVL V  +    H+II  + N    
Sbjct: 15  WYHGAIPRAEVAELLVHS---GDFLVRESQG-KQEYVLSVLWDGLPRHFIIQSLDN---- 66

Query: 348 TCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAK 391
             Y++  + F  +P L+           PL K +   + + + K
Sbjct: 67  -LYRLEGEGFPSIPLLIDHLLSTQQ---PLTKKSGVVLHRAVPK 106

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens} Length = 86

 Score = 77.5 bits (191), Expect = 9e-18
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 100 SPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIP 159
           S +          VIAK+D+      +L  KKN+ L ++  D + WW  +N +   G +P
Sbjct: 21  SLVKNLHMTEEVIVIAKWDYTAQQDQELDIKKNERLWLL-DDSKTWWRVRNAANRTGYVP 79

Query: 160 VPYVQK 165
             YV++
Sbjct: 80  SNYVER 85

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens} Length = 86

 Score = 77.5 bits (191), Expect = 9e-18
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 375 SPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIP 434
           S +          VIAK+D+      +L  KKN+ L ++  D + WW  +N +   G +P
Sbjct: 21  SLVKNLHMTEEVIVIAKWDYTAQQDQELDIKKNERLWLL-DDSKTWWRVRNAANRTGYVP 79

Query: 435 VPYVQK 440
             YV++
Sbjct: 80  SNYVER 85

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A 3h0f_A* Length = 73

 Score = 76.6 bits (189), Expect = 1e-17
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 99  TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGS 157
           T  L       +   +A YD++    DDL F K +   +++  E  WW A++++ GE G 
Sbjct: 4   TGTLRTRGGTGVTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGY 63

Query: 158 IPVPYVQK 165
           IP  YV  
Sbjct: 64  IPSNYVAP 71

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A 3h0f_A* Length = 73

 Score = 76.6 bits (189), Expect = 1e-17
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 374 TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGS 432
           T  L       +   +A YD++    DDL F K +   +++  E  WW A++++ GE G 
Sbjct: 4   TGTLRTRGGTGVTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGY 63

Query: 433 IPVPYVQK 440
           IP  YV  
Sbjct: 64  IPSNYVAP 71

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 76.6 bits (189), Expect = 1e-17
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSK-DEEHWWTAQNISGEVGSIPVPYV 163
                       Y +  + PD+L  +++++L V+   D E W  A+N  G+VG +P  Y+
Sbjct: 8   TLRNYPLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYL 67

Query: 164 QKYSE 168
           Q  + 
Sbjct: 68  QFPTS 72

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 76.6 bits (189), Expect = 1e-17
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 380 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSK-DEEHWWTAQNISGEVGSIPVPYV 438
                       Y +  + PD+L  +++++L V+   D E W  A+N  G+VG +P  Y+
Sbjct: 8   TLRNYPLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYL 67

Query: 439 QKYSE 443
           Q  + 
Sbjct: 68  QFPTS 72

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 75.8 bits (187), Expect = 2e-17
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
           + V   YDF   + ++L   K+++L V+ +D   WW  ++ SG+ G +P   + + S
Sbjct: 8   KYVKILYDFTARNANELSVLKDEVLEVL-EDGRQWWKLRSRSGQAGYVPCNILGEAS 63

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 75.8 bits (187), Expect = 2e-17
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 442
           + V   YDF   + ++L   K+++L V+ +D   WW  ++ SG+ G +P   + + S
Sbjct: 8   KYVKILYDFTARNANELSVLKDEVLEVL-EDGRQWWKLRSRSGQAGYVPCNILGEAS 63

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 37.2 bits (87), Expect = 7e-04
 Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 7/58 (12%)

Query: 208 ARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
           +  K V++   YD TA     L +   ++++V +           +G+ G+ P   + 
Sbjct: 5   SSGKYVKI--LYDFTARNANELSVLKDEVLEVLEDGRQWWKLRSRSGQAGYVPCNILG 60

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 37.2 bits (87), Expect = 7e-04
 Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 7/58 (12%)

Query: 483 ARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 535
           +  K V++   YD TA     L +   ++++V +           +G+ G+ P   + 
Sbjct: 5   SSGKYVKI--LYDFTARNANELSVLKDEVLEVLEDGRQWWKLRSRSGQAGYVPCNILG 60

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus} Length = 109

 Score = 77.1 bits (190), Expect = 2e-17
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)

Query: 99  TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGS 157
           +S      T  +   +A YD++    +DL FKK +   +++  E  WW A++I+ G+ G 
Sbjct: 16  SSSYPTGLTGGVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGY 75

Query: 158 IPVPYVQKYSEGMS 171
           IP  YV       +
Sbjct: 76  IPSNYVVPADSIQA 89

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus} Length = 109

 Score = 77.1 bits (190), Expect = 2e-17
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)

Query: 374 TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGS 432
           +S      T  +   +A YD++    +DL FKK +   +++  E  WW A++I+ G+ G 
Sbjct: 16  SSSYPTGLTGGVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGY 75

Query: 433 IPVPYVQKYSEGMS 446
           IP  YV       +
Sbjct: 76  IPSNYVVPADSIQA 89

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus} Length = 109

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 24/129 (18%), Positives = 39/129 (30%), Gaps = 29/129 (22%)

Query: 183 SSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKT 237
           SS       +  V  +           V        YD  A     L  + G+  ++   
Sbjct: 2   SSGSSGASSSFSVVSS--SYPTGLTGGVTIFVA--LYDYEARTTEDLSFKKGERFQIINN 57

Query: 238 NINGQWEGE--LNGKTGHFPFTHVEFIPTNETMPFHSSMKMTGTFDPHDRNSWYFGMMTR 295
                WE      GK+G+ P  +V    + +                     WYFG M R
Sbjct: 58  TEGDWWEARSIATGKSGYIPSNYVVPADSIQAEE------------------WYFGKMGR 99

Query: 296 QEAQAILLS 304
           ++A++   S
Sbjct: 100 KDAESGPSS 108

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A Length = 68

 Score = 75.4 bits (186), Expect = 3e-17
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 107 TKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 166
           +  ++ V+  YDF   +  +L  K+ D+L V+  D   WW  ++ +G+ G +P   +  Y
Sbjct: 5   SGALKWVLCNYDFQARNSSELSVKQRDVLEVL-DDSRKWWKVRDPAGQEGYVPYNILTPY 63

Query: 167 SEGMS 171
               S
Sbjct: 64  PAAAS 68

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A Length = 68

 Score = 75.4 bits (186), Expect = 3e-17
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 382 TKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 441
           +  ++ V+  YDF   +  +L  K+ D+L V+  D   WW  ++ +G+ G +P   +  Y
Sbjct: 5   SGALKWVLCNYDFQARNSSELSVKQRDVLEVL-DDSRKWWKVRDPAGQEGYVPYNILTPY 63

Query: 442 SEGMS 446
               S
Sbjct: 64  PAAAS 68

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 75.6 bits (186), Expect = 3e-17
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 99  TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGS 157
           + PL  P     + +    D+   D     F++ + L V+S +   WW A ++ +G    
Sbjct: 6   SGPLPNPEGLDSDFLAVLSDYPSPDISPPIFRRGEKLRVISDEGG-WWKAISLSTGRESY 64

Query: 158 IPVPYVQKYS 167
           IP   V + S
Sbjct: 65  IPGICVARVS 74

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 75.6 bits (186), Expect = 3e-17
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 374 TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGS 432
           + PL  P     + +    D+   D     F++ + L V+S +   WW A ++ +G    
Sbjct: 6   SGPLPNPEGLDSDFLAVLSDYPSPDISPPIFRRGEKLRVISDEGG-WWKAISLSTGRESY 64

Query: 433 IPVPYVQKYS 442
           IP   V + S
Sbjct: 65  IPGICVARVS 74

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens} Length = 68

 Score = 74.6 bits (184), Expect = 4e-17
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
            K+   Y+F+  +P +L   + + L V+    + WW  +N +G  G IP   ++  S
Sbjct: 8   LKMQVLYEFEARNPRELTVVQGEKLEVL-DHSKRWWLVKNEAGRSGYIPSNILEPLS 63

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens} Length = 68

 Score = 74.6 bits (184), Expect = 4e-17
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 442
            K+   Y+F+  +P +L   + + L V+    + WW  +N +G  G IP   ++  S
Sbjct: 8   LKMQVLYEFEARNPRELTVVQGEKLEVL-DHSKRWWLVKNEAGRSGYIPSNILEPLS 63

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A Length = 60

 Score = 73.8 bits (182), Expect = 8e-17
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
           +   +KYDF   +  +L   K+D+L ++  D   WW  +N SG+ G +P   +     
Sbjct: 2   KYAKSKYDFVARNSSELSVMKDDVLEILD-DRRQWWKVRNASGDSGFVPNNILDIMRT 58

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A Length = 60

 Score = 73.8 bits (182), Expect = 8e-17
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 443
           +   +KYDF   +  +L   K+D+L ++  D   WW  +N SG+ G +P   +     
Sbjct: 2   KYAKSKYDFVARNSSELSVMKDDVLEILD-DRRQWWKVRNASGDSGFVPNNILDIMRT 58

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} Length = 73

 Score = 73.9 bits (182), Expect = 1e-16
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           E V+A YD+    P ++  KK DIL +++   + WW  + ++   G +P  YV+K
Sbjct: 6   ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKK 59

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} Length = 73

 Score = 73.9 bits (182), Expect = 1e-16
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 440
           E V+A YD+    P ++  KK DIL +++   + WW  + ++   G +P  YV+K
Sbjct: 6   ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKK 59

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} Length = 73

 Score = 51.5 bits (124), Expect = 8e-09
 Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 494 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETNG 548
           YD        + ++ GDI+ +  +     W+ E+N + G  P  +V+ +   +++   N 
Sbjct: 12  YDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPAQSASRENL 71

Query: 549 NG 550
            G
Sbjct: 72  GG 73

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} Length = 73

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNE 266
           YD        + ++ GDI+ +  +     W+ E+N + G  P  +V+ +   +
Sbjct: 12  YDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPAQ 64

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 73.8 bits (182), Expect = 1e-16
 Identities = 12/65 (18%), Positives = 29/65 (44%), Gaps = 1/65 (1%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE-EHWWTAQNISGEVGSIPVPYV 163
            +  +    +A Y F+G+    +   + + L ++ +D+ + W   +   G  G +P  Y+
Sbjct: 2   SSGSSGGHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYL 61

Query: 164 QKYSE 168
           +  S 
Sbjct: 62  RVTSG 66

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 73.8 bits (182), Expect = 1e-16
 Identities = 12/65 (18%), Positives = 29/65 (44%), Gaps = 1/65 (1%)

Query: 380 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE-EHWWTAQNISGEVGSIPVPYV 438
            +  +    +A Y F+G+    +   + + L ++ +D+ + W   +   G  G +P  Y+
Sbjct: 2   SSGSSGGHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYL 61

Query: 439 QKYSE 443
           +  S 
Sbjct: 62  RVTSG 66

>2kno_A Tensin-like C1 domain-containing phosphatase; SH2 domain, TENC1, solution structure, cell junctio membrane, hydrolase, membrane, metal-binding; NMR {Homo sapiens} PDB: 2l6k_A Length = 131

 Score = 75.7 bits (186), Expect = 1e-16
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 21/100 (21%)

Query: 13  WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVK---------------ENNK 57
           WY   ++R +A A LL +KD GAFL+RDS++  G Y L +K                   
Sbjct: 22  WYKPHLSRDQAIA-LLKDKDPGAFLIRDSHSFQGAYGLALKVATPPPSAQPWKGDPVEQL 80

Query: 58  VSHYIINKITNTEQQTCYKIGDK--TFSDLPSLLAFYKVH 95
           V H++I       +    K       F  L +L++ + + 
Sbjct: 81  VRHFLIET---GPKGVKIKGCPSEPYFGSLSALVSQHSIS 117

>2kno_A Tensin-like C1 domain-containing phosphatase; SH2 domain, TENC1, solution structure, cell junctio membrane, hydrolase, membrane, metal-binding; NMR {Homo sapiens} PDB: 2l6k_A Length = 131

 Score = 75.7 bits (186), Expect = 1e-16
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 21/100 (21%)

Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVK---------------ENNK 332
           WY   ++R +A A LL +KD GAFL+RDS++  G Y L +K                   
Sbjct: 22  WYKPHLSRDQAIA-LLKDKDPGAFLIRDSHSFQGAYGLALKVATPPPSAQPWKGDPVEQL 80

Query: 333 VSHYIINKITNTEQQTCYKIGDK--TFSDLPSLLAFYKVH 370
           V H++I       +    K       F  L +L++ + + 
Sbjct: 81  VRHFLIET---GPKGVKIKGCPSEPYFGSLSALVSQHSIS 117

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 73.4 bits (181), Expect = 1e-16
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM 170
           E+ +A  D+   D   L F + + ++++ +    WW  +  +G  G IP  +V K+S   
Sbjct: 8   EEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGE-RAGCCGYIPANHVGKHSGPS 66

Query: 171 S 171
           S
Sbjct: 67  S 67

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 73.4 bits (181), Expect = 1e-16
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM 445
           E+ +A  D+   D   L F + + ++++ +    WW  +  +G  G IP  +V K+S   
Sbjct: 8   EEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGE-RAGCCGYIPANHVGKHSGPS 66

Query: 446 S 446
           S
Sbjct: 67  S 67

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 13/47 (27%), Positives = 17/47 (36%), Gaps = 5/47 (10%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
            D  A     L    G+ I + +      W GE  G  G+ P  HV 
Sbjct: 14  ADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVG 60

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 13/47 (27%), Positives = 17/47 (36%), Gaps = 5/47 (10%)

Query: 494 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 535
            D  A     L    G+ I + +      W GE  G  G+ P  HV 
Sbjct: 14  ADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVG 60

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1 Length = 83

 Score = 73.2 bits (180), Expect = 2e-16
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
                 E V+A YD+    P ++  KK DIL +++   + WW  + ++   G +P  YV+
Sbjct: 12  SDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVK 70

Query: 165 KYSEG 169
           K +  
Sbjct: 71  KLAAA 75

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1 Length = 83

 Score = 73.2 bits (180), Expect = 2e-16
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 380 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
                 E V+A YD+    P ++  KK DIL +++   + WW  + ++   G +P  YV+
Sbjct: 12  SDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVK 70

Query: 440 KYSEG 444
           K +  
Sbjct: 71  KLAAA 75

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1 Length = 83

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETMPFHS 272
           YD        + ++ GDI+ +  +     W+ E+N + G  P  +V+ +    + P   
Sbjct: 24  YDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLAAAWSHPQFE 82

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1 Length = 83

 Score = 46.2 bits (110), Expect = 6e-07
 Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 494 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS 543
           YD        + ++ GDI+ +  +     W+ E+N + G  P  +V+ +    + 
Sbjct: 24  YDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLAAAWSH 78

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 72.9 bits (179), Expect = 3e-16
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 104 KPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQ-NISGEVGSIPVPY 162
                   + +A+Y F G+   +L F+K + + ++ K  E+W+  +   +G  G  P  Y
Sbjct: 11  TYQVLEYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASY 70

Query: 163 VQKYSE 168
           VQ   E
Sbjct: 71  VQVSRE 76

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 72.9 bits (179), Expect = 3e-16
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 379 KPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQ-NISGEVGSIPVPY 437
                   + +A+Y F G+   +L F+K + + ++ K  E+W+  +   +G  G  P  Y
Sbjct: 11  TYQVLEYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASY 70

Query: 438 VQKYSE 443
           VQ   E
Sbjct: 71  VQVSRE 76

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 7/72 (9%)

Query: 480 PAFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFT 532
           P +  ++       Y         L    G+ I + +      +EG +   G+ G FP +
Sbjct: 10  PTYQVLEYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPAS 69

Query: 533 HVEFIPTNETSV 544
           +V+        +
Sbjct: 70  YVQVSREPRLRL 81

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 7/70 (10%)

Query: 205 PAFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFT 257
           P +  ++       Y         L    G+ I + +      +EG +   G+ G FP +
Sbjct: 10  PTYQVLEYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPAS 69

Query: 258 HVEFIPTNET 267
           +V+       
Sbjct: 70  YVQVSREPRL 79

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 80.7 bits (199), Expect = 3e-16
 Identities = 46/214 (21%), Positives = 75/214 (35%), Gaps = 33/214 (15%)

Query: 182 SSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTA---LKLEIGDIIKVTKTN 238
           ++   +     +    T  +   P    V        Y+      L  + G+ +++    
Sbjct: 57  AAEPKLFGGFNSSDTVTSPQRAGPLAGGVTTFVALYDYESRTETDLSFKKGERLQIVNNT 116

Query: 239 INGQWEGEL--NGKTGHFPFTHVEFIPTNETMPFHSSMKMTGTFDPHDRNSWYFGMMTRQ 296
               W       G+TG+ P  +V    + +                     WYFG +TR+
Sbjct: 117 EGDWWLAHSLSTGQTGYIPSNYVAPSDSIQAEE------------------WYFGKITRR 158

Query: 297 EAQAILL-SEKDNGAFLVRDSNTILGNYVLCVK-----ENNKVSHYIINKITNTEQQTCY 350
           E++ +LL +E   G FLVR+S T  G Y L V      +   V HY I K+ +      Y
Sbjct: 159 ESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGG---FY 215

Query: 351 KIGDKTFSDLPSLLAFYKVHYLD-TSPLIKPATK 383
                 F+ L  L+A+Y  H       L      
Sbjct: 216 ITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPT 249

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 75.7 bits (186), Expect = 1e-14
 Identities = 35/110 (31%), Positives = 48/110 (43%), Gaps = 10/110 (9%)

Query: 6   DPHDRNSWYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVK-----ENNKVS 59
           D      WYFG +TR+E++ +LL +E   G FLVR+S T  G Y L V      +   V 
Sbjct: 143 DSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVK 202

Query: 60  HYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLD-TSPLIKPATK 108
           HY I K+ +      Y      F+ L  L+A+Y  H       L      
Sbjct: 203 HYKIRKLDSGG---FYITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPT 249

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 61.0 bits (148), Expect = 4e-10
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYV 163
           P    +   +A YD++     DL FKK + L +V+  E  WW A ++S G+ G IP  YV
Sbjct: 80  PLAGGVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 139

Query: 164 QK 165
             
Sbjct: 140 AP 141

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 61.0 bits (148), Expect = 4e-10
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 380 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYV 438
           P    +   +A YD++     DL FKK + L +V+  E  WW A ++S G+ G IP  YV
Sbjct: 80  PLAGGVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 139

Query: 439 QK 440
             
Sbjct: 140 AP 141

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A Length = 62

 Score = 71.9 bits (177), Expect = 3e-16
 Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQK 165
             VIA + ++ +   DL F+K + L ++ +  E WW AQ+++ G+ G IP  +V K
Sbjct: 7   NLVIALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFVAK 61

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A Length = 62

 Score = 71.9 bits (177), Expect = 3e-16
 Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQK 440
             VIA + ++ +   DL F+K + L ++ +  E WW AQ+++ G+ G IP  +V K
Sbjct: 7   NLVIALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFVAK 61

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ... Length = 62

 Score = 71.9 bits (177), Expect = 4e-16
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           E V+  YD+    P +L  KK DIL +++   + WW  + ++G  G +P  Y++K
Sbjct: 7   ELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIE-VNGRQGFVPAAYLKK 60

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ... Length = 62

 Score = 71.9 bits (177), Expect = 4e-16
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 440
           E V+  YD+    P +L  KK DIL +++   + WW  + ++G  G +P  Y++K
Sbjct: 7   ELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIE-VNGRQGFVPAAYLKK 60

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ... Length = 62

 Score = 45.7 bits (109), Expect = 6e-07
 Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 5/49 (10%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
           YD        L ++ GDI+ +  +     W+ E+NG+ G  P  +++ +
Sbjct: 13  YDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKKL 61

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ... Length = 62

 Score = 45.7 bits (109), Expect = 6e-07
 Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 5/49 (10%)

Query: 494 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 537
           YD        L ++ GDI+ +  +     W+ E+NG+ G  P  +++ +
Sbjct: 13  YDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKKL 61

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens} Length = 69

 Score = 72.0 bits (177), Expect = 4e-16
 Identities = 20/57 (35%), Positives = 27/57 (47%)

Query: 109 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           T   V+A YD+  N  D+L   + DI+ V  KD E WW      G+ G  P  +V  
Sbjct: 5   TAPTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVAS 61

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens} Length = 69

 Score = 72.0 bits (177), Expect = 4e-16
 Identities = 20/57 (35%), Positives = 27/57 (47%)

Query: 384 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 440
           T   V+A YD+  N  D+L   + DI+ V  KD E WW      G+ G  P  +V  
Sbjct: 5   TAPTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVAS 61

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens} Length = 69

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGEL-NGKTGHFPFTHVEFIPTNETMP 269
            A     L +  GDII+V   +    W G +  G+ G+FP  HV      + +P
Sbjct: 16  TANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVASETLYQELP 69

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens} Length = 69

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 492 NAYDKTALKLEIGDIIKVTKTNINGQWEGEL-NGKTGHFPFTHVEFIPTNE 541
            A     L +  GDII+V   +    W G +  G+ G+FP  HV      +
Sbjct: 16  TANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVASETLYQ 66

>3maz_A Signal-transducing adaptor protein 1; modular domain, phosphotyrosine, specificity, cytoplasm, phosphoprotein, SH2 domain, signaling protein; HET: PTR; 1.90A {Homo sapiens} Length = 125

 Score = 73.3 bits (180), Expect = 7e-16
 Identities = 17/94 (18%), Positives = 40/94 (42%), Gaps = 8/94 (8%)

Query: 6  DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKEN---NKVSHYI 62
          D  +     F  ++R+EA  +L      G  ++R  +    NY + +++     ++ HY 
Sbjct: 10 DVLNPMPACFYTVSRKEATEMLQKNPSLGNMILRPGSD-SRNYSITIRQEIDIPRIKHY- 67

Query: 63 INKITNTEQQTCYKIGDK-TFSDLPSLLAFYKVH 95
            K+ +  Q    ++    T  +L S++ ++   
Sbjct: 68 --KVMSVGQNYTIELEKPVTLPNLFSVIDYFVKE 99

>3maz_A Signal-transducing adaptor protein 1; modular domain, phosphotyrosine, specificity, cytoplasm, phosphoprotein, SH2 domain, signaling protein; HET: PTR; 1.90A {Homo sapiens} Length = 125

 Score = 73.3 bits (180), Expect = 7e-16
 Identities = 17/94 (18%), Positives = 40/94 (42%), Gaps = 8/94 (8%)

Query: 281 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKEN---NKVSHYI 337
           D  +     F  ++R+EA  +L      G  ++R  +    NY + +++     ++ HY 
Sbjct: 10  DVLNPMPACFYTVSRKEATEMLQKNPSLGNMILRPGSD-SRNYSITIRQEIDIPRIKHY- 67

Query: 338 INKITNTEQQTCYKIGDK-TFSDLPSLLAFYKVH 370
             K+ +  Q    ++    T  +L S++ ++   
Sbjct: 68  --KVMSVGQNYTIELEKPVTLPNLFSVIDYFVKE 99

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 71.7 bits (176), Expect = 7e-16
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 8/65 (12%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS--------GEVGSIPVPY 162
           +  +A +D+     +DL F+  D L V+    E WW A+++            G IP  Y
Sbjct: 8   QYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNY 67

Query: 163 VQKYS 167
           V + S
Sbjct: 68  VAEDS 72

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 71.7 bits (176), Expect = 7e-16
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 8/65 (12%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS--------GEVGSIPVPY 437
           +  +A +D+     +DL F+  D L V+    E WW A+++            G IP  Y
Sbjct: 8   QYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNY 67

Query: 438 VQKYS 442
           V + S
Sbjct: 68  VAEDS 72

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 98

 Score = 72.1 bits (177), Expect = 8e-16
 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 98  DTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGS 157
            +S    PA   + +VIA YD+  N+ D+L F K  ++ V++KD+  WW  + I+G  G 
Sbjct: 22  PSSERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGE-INGVTGL 80

Query: 158 IPVPYVQKYSE 168
            P  YV+  ++
Sbjct: 81  FPSNYVKMTTD 91

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 98

 Score = 72.1 bits (177), Expect = 8e-16
 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 373 DTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGS 432
            +S    PA   + +VIA YD+  N+ D+L F K  ++ V++KD+  WW  + I+G  G 
Sbjct: 22  PSSERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGE-INGVTGL 80

Query: 433 IPVPYVQKYSE 443
            P  YV+  ++
Sbjct: 81  FPSNYVKMTTD 91

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 98

 Score = 50.5 bits (121), Expect = 3e-08
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 7/69 (10%)

Query: 480 PAFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHV 534
           PAF  V QV     YD  A     L    G +I V   +    W+GE+NG TG FP  +V
Sbjct: 29  PAFHPVCQVIA--MYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYV 86

Query: 535 EFIPTNETS 543
           +    +   
Sbjct: 87  KMTTDSSGP 95

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 98

 Score = 50.5 bits (121), Expect = 3e-08
 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 7/67 (10%)

Query: 205 PAFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHV 259
           PAF  V QV     YD  A     L    G +I V   +    W+GE+NG TG FP  +V
Sbjct: 29  PAFHPVCQVIA--MYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYV 86

Query: 260 EFIPTNE 266
           +    + 
Sbjct: 87  KMTTDSS 93

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae} Length = 71

 Score = 71.1 bits (175), Expect = 9e-16
 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 106 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVS-KDEEHWWTAQNI-SGEVGSIPVPYV 163
           A+K+ ++ I +YDF     D+L  K  D + ++  K  + WW  Q + SG+ G +P  ++
Sbjct: 2   ASKSKKRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFI 61

Query: 164 QKYSE 168
           +   +
Sbjct: 62  EPVRD 66

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae} Length = 71

 Score = 71.1 bits (175), Expect = 9e-16
 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 381 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVS-KDEEHWWTAQNI-SGEVGSIPVPYV 438
           A+K+ ++ I +YDF     D+L  K  D + ++  K  + WW  Q + SG+ G +P  ++
Sbjct: 2   ASKSKKRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFI 61

Query: 439 QKYSE 443
           +   +
Sbjct: 62  EPVRD 66

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A Length = 65

 Score = 70.8 bits (174), Expect = 9e-16
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 7/62 (11%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQ-------NISGEVGSIPVPYV 163
           E V+A YD+    P ++  KK DIL +++   + WW  +             G +P  YV
Sbjct: 2   ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYV 61

Query: 164 QK 165
           +K
Sbjct: 62  KK 63

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A Length = 65

 Score = 70.8 bits (174), Expect = 9e-16
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 7/62 (11%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQ-------NISGEVGSIPVPYV 438
           E V+A YD+    P ++  KK DIL +++   + WW  +             G +P  YV
Sbjct: 2   ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYV 61

Query: 439 QK 440
           +K
Sbjct: 62  KK 63

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 70.8 bits (174), Expect = 1e-15
 Identities = 13/60 (21%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
            + + + + +A + + G    +L F++ D+L +  +    WW  +  +G  G IP  Y+ 
Sbjct: 5   SSGEGVVEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGE-HNGMRGLIPHKYIT 63

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 70.8 bits (174), Expect = 1e-15
 Identities = 13/60 (21%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 380 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
            + + + + +A + + G    +L F++ D+L +  +    WW  +  +G  G IP  Y+ 
Sbjct: 5   SSGEGVVEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGE-HNGMRGLIPHKYIT 63

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 494 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETNG 548
           +  T      L    GD++++ +   +  W GE NG  G  P  ++      E  V   G
Sbjct: 17  FAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITLPAGTEKQVVGAG 76

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 48.9 bits (117), Expect = 7e-08
 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 5/53 (9%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNE 266
           +  T      L    GD++++ +   +  W GE NG  G  P  ++      E
Sbjct: 17  FAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITLPAGTE 69

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus} Length = 60

 Score = 70.3 bits (173), Expect = 1e-15
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           E  IAK+D+ G    +L FKK   L++  +  E WW  +  +G  G +P  Y+ 
Sbjct: 7   EFAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGR-HNGIDGLVPHQYIV 59

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus} Length = 60

 Score = 70.3 bits (173), Expect = 1e-15
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
           E  IAK+D+ G    +L FKK   L++  +  E WW  +  +G  G +P  Y+ 
Sbjct: 7   EFAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGR-HNGIDGLVPHQYIV 59

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus} Length = 60

 Score = 44.1 bits (105), Expect = 2e-06
 Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 5/47 (10%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
           +D        L  + G  + +        WEG  NG  G  P  ++ 
Sbjct: 13  FDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIV 59

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus} Length = 60

 Score = 44.1 bits (105), Expect = 2e-06
 Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 5/47 (10%)

Query: 494 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 535
           +D        L  + G  + +        WEG  NG  G  P  ++ 
Sbjct: 13  FDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIV 59

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A Length = 86

 Score = 71.3 bits (175), Expect = 1e-15
 Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 2/68 (2%)

Query: 99  TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGS 157
            +P I+ A      V+A YD++    +DL F+K D ++V+ +  E WW A++++  + G 
Sbjct: 14  NTPGIREAGSEDIIVVALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKARSLATRKEGY 72

Query: 158 IPVPYVQK 165
           IP  YV +
Sbjct: 73  IPSNYVAR 80

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A Length = 86

 Score = 71.3 bits (175), Expect = 1e-15
 Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 2/68 (2%)

Query: 374 TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGS 432
            +P I+ A      V+A YD++    +DL F+K D ++V+ +  E WW A++++  + G 
Sbjct: 14  NTPGIREAGSEDIIVVALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKARSLATRKEGY 72

Query: 433 IPVPYVQK 440
           IP  YV +
Sbjct: 73  IPSNYVAR 80

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A Length = 79

 Score = 70.8 bits (174), Expect = 1e-15
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQKYSE 168
             A YD++    DDL F K +   +++  E  WW A++++ GE G IP  Y+     
Sbjct: 8   FEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVDR 64

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A Length = 79

 Score = 70.8 bits (174), Expect = 1e-15
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQKYSE 443
             A YD++    DDL F K +   +++  E  WW A++++ GE G IP  Y+     
Sbjct: 8   FEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVDR 64

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A 1qwf_A 1prl_C ... Length = 84

 Score = 70.9 bits (174), Expect = 1e-15
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 109 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYS 167
            +   +A YD++     DL F K +   ++      WW A+++ +GE G IP  YV    
Sbjct: 5   GVTLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVD 64

Query: 168 E 168
            
Sbjct: 65  S 65

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A 1qwf_A 1prl_C ... Length = 84

 Score = 70.9 bits (174), Expect = 1e-15
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 384 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYS 442
            +   +A YD++     DL F K +   ++      WW A+++ +GE G IP  YV    
Sbjct: 5   GVTLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVD 64

Query: 443 E 443
            
Sbjct: 65  S 65

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A 1qwf_A 1prl_C ... Length = 84

 Score = 37.8 bits (88), Expect = 8e-04
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 492 NAYDKTALKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVEFIPTNETSVETNGN 549
           NA   T L    G+  ++ +      WE      G+TG+ P  +V  + + +   +    
Sbjct: 16  NATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVDSIQGEQKLISE 75

Query: 550 GDIH 553
            D+H
Sbjct: 76  EDLH 79

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens} Length = 70

 Score = 70.3 bits (173), Expect = 1e-15
 Identities = 14/59 (23%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQ-NISGEVGSIPVPYVQKYSE 168
            + IAK++F+G+   ++ F+K + + ++ + +E+W+  +   +   G  P+ YV   S 
Sbjct: 8   GEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVISG 66

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens} Length = 70

 Score = 70.3 bits (173), Expect = 1e-15
 Identities = 14/59 (23%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQ-NISGEVGSIPVPYVQKYSE 443
            + IAK++F+G+   ++ F+K + + ++ + +E+W+  +   +   G  P+ YV   S 
Sbjct: 8   GEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVISG 66

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens} Length = 70

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNG--KTGHFPFTHVEFIP 263
           N   +  +    G+ I + +      +EG + G  + G FP T+V+ I 
Sbjct: 17  NGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIS 65

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens} Length = 70

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 492 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNG--KTGHFPFTHVEFIP 538
           N   +  +    G+ I + +      +EG + G  + G FP T+V+ I 
Sbjct: 17  NGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIS 65

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 80

 Score = 70.5 bits (173), Expect = 2e-15
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 8/72 (11%)

Query: 100 SPLIKPATKTIEKVIAKYDFDGNDPD-DLPFKKNDILIVVSKD-----EEHWWTAQNISG 153
           S  I P+   +E   A YDF   +P+ ++  KK D++ ++SK      +  WW  +  +G
Sbjct: 6   SEPIDPSK--LEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNG 63

Query: 154 EVGSIPVPYVQK 165
            +G IP  Y++ 
Sbjct: 64  NIGYIPYNYIEI 75

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 80

 Score = 70.5 bits (173), Expect = 2e-15
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 8/72 (11%)

Query: 375 SPLIKPATKTIEKVIAKYDFDGNDPD-DLPFKKNDILIVVSKD-----EEHWWTAQNISG 428
           S  I P+   +E   A YDF   +P+ ++  KK D++ ++SK      +  WW  +  +G
Sbjct: 6   SEPIDPSK--LEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNG 63

Query: 429 EVGSIPVPYVQK 440
            +G IP  Y++ 
Sbjct: 64  NIGYIPYNYIEI 75

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 70.5 bits (173), Expect = 2e-15
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
            +  +I    A +D       +L FK  D++ V+    + WW  Q I  E G  P  +V+
Sbjct: 5   SSGDSIVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQ-IDDEEGWFPASFVR 63

Query: 165 KYSE 168
            +  
Sbjct: 64  LWVN 67

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 70.5 bits (173), Expect = 2e-15
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 380 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
            +  +I    A +D       +L FK  D++ V+    + WW  Q I  E G  P  +V+
Sbjct: 5   SSGDSIVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQ-IDDEEGWFPASFVR 63

Query: 440 KYSE 443
            +  
Sbjct: 64  LWVN 67

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 48.9 bits (117), Expect = 7e-08
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 494 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVE 545
           +D        L  + GD+IKV   +    W G+++ + G FP + V      E  VE
Sbjct: 17  WDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQEDEVE 73

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 47.0 bits (112), Expect = 4e-07
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 5/54 (9%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET 267
           +D        L  + GD+IKV   +    W G+++ + G FP + V      E 
Sbjct: 17  WDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQED 70

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A Length = 58

 Score = 69.6 bits (171), Expect = 2e-15
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 112 KVIAKYDFDG-NDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKY 166
              A YDF G   P +LP KK D++ +  ++   W   + +   + G +P  Y++ +
Sbjct: 2   MFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMKPH 58

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A Length = 58

 Score = 69.6 bits (171), Expect = 2e-15
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 387 KVIAKYDFDG-NDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKY 441
              A YDF G   P +LP KK D++ +  ++   W   + +   + G +P  Y++ +
Sbjct: 2   MFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMKPH 58

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A Length = 58

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVE 260
           L L+ GD+I +T+   +G   G+L    K G  P  +++
Sbjct: 18  LPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMK 56

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A Length = 58

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 499 LKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVE 535
           L L+ GD+I +T+   +G   G+L    K G  P  +++
Sbjct: 18  LPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMK 56

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A Length = 58

 Score = 69.5 bits (171), Expect = 2e-15
 Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
           + V A +DF+  +  +L FK+ D++ +++KD+ +WW  Q ++   G  P  YV  Y+
Sbjct: 3   KFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQ-LNNRRGIFPSNYVCPYN 58

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A Length = 58

 Score = 69.5 bits (171), Expect = 2e-15
 Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 442
           + V A +DF+  +  +L FK+ D++ +++KD+ +WW  Q ++   G  P  YV  Y+
Sbjct: 3   KFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQ-LNNRRGIFPSNYVCPYN 58

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A Length = 58

 Score = 47.2 bits (113), Expect = 2e-07
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
           L  + GD+I +   +    WEG+LN + G FP  +V 
Sbjct: 19  LAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVC 55

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A Length = 58

 Score = 47.2 bits (113), Expect = 2e-07
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 499 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 535
           L  + GD+I +   +    WEG+LN + G FP  +V 
Sbjct: 19  LAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVC 55

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens} Length = 58

 Score = 69.5 bits (171), Expect = 2e-15
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           ++   A Y F+   PD+L F++ DI+ +    + +WW      G  G IP  YV +
Sbjct: 3   VKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGT-SKGRTGLIPSNYVAE 57

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens} Length = 58

 Score = 69.5 bits (171), Expect = 2e-15
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 440
           ++   A Y F+   PD+L F++ DI+ +    + +WW      G  G IP  YV +
Sbjct: 3   VKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGT-SKGRTGLIPSNYVAE 57

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens} Length = 58

 Score = 49.8 bits (120), Expect = 2e-08
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 7/58 (12%)

Query: 208 ARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
            +VK  R    Y         L  E GDII +T  +    W+G   G+TG  P  +V 
Sbjct: 1   GQVKVFRA--LYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVA 56

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens} Length = 58

 Score = 49.8 bits (120), Expect = 2e-08
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 7/58 (12%)

Query: 483 ARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 535
            +VK  R    Y         L  E GDII +T  +    W+G   G+TG  P  +V 
Sbjct: 1   GQVKVFRA--LYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVA 56

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A Length = 58

 Score = 69.5 bits (171), Expect = 2e-15
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           +E V A Y FD     DL  K  D + ++ K    W+     +G  G  P  YV+
Sbjct: 2   MEYVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGS-CNGRTGIFPANYVK 55

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A Length = 58

 Score = 69.5 bits (171), Expect = 2e-15
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
           +E V A Y FD     DL  K  D + ++ K    W+     +G  G  P  YV+
Sbjct: 2   MEYVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGS-CNGRTGIFPANYVK 55

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A Length = 58

 Score = 47.9 bits (115), Expect = 1e-07
 Identities = 12/37 (32%), Positives = 22/37 (59%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
           L L+ GD +++ +      ++G  NG+TG FP  +V+
Sbjct: 19  LGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVK 55

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A Length = 58

 Score = 47.9 bits (115), Expect = 1e-07
 Identities = 12/37 (32%), Positives = 22/37 (59%)

Query: 499 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 535
           L L+ GD +++ +      ++G  NG+TG FP  +V+
Sbjct: 19  LGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVK 55

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 69

 Score = 70.0 bits (172), Expect = 2e-15
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
             +   E+ IA Y +   +P DL F + + ++V  KD E WWT   I    G  P  YV+
Sbjct: 3   SGSSGGEEYIALYPYSSVEPGDLTFTEGEEILVTQKDGE-WWTGS-IGDRSGIFPSNYVK 60

Query: 165 KYSEGMS 171
               G S
Sbjct: 61  PKDSGPS 67

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 69

 Score = 70.0 bits (172), Expect = 2e-15
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 380 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
             +   E+ IA Y +   +P DL F + + ++V  KD E WWT   I    G  P  YV+
Sbjct: 3   SGSSGGEEYIALYPYSSVEPGDLTFTEGEEILVTQKDGE-WWTGS-IGDRSGIFPSNYVK 60

Query: 440 KYSEGMS 446
               G S
Sbjct: 61  PKDSGPS 67

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 69

 Score = 46.1 bits (110), Expect = 6e-07
 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 504 GDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS 543
           G+ I VT+ +    W G +  ++G FP  +V+   +  +S
Sbjct: 30  GEEILVTQKD-GEWWTGSIGDRSGIFPSNYVKPKDSGPSS 68

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 69

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 229 GDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
           G+ I VT+ +    W G +  ++G FP  +V+
Sbjct: 30  GEEILVTQKD-GEWWTGSIGDRSGIFPSNYVK 60

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A Length = 58

 Score = 69.1 bits (170), Expect = 3e-15
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           +    A YDF+  + D+L F+  +++ V+      WWT + +  ++G  P  YV  
Sbjct: 1   VRWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGR-LHNKLGLFPANYVAP 55

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A Length = 58

 Score = 69.1 bits (170), Expect = 3e-15
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 440
           +    A YDF+  + D+L F+  +++ V+      WWT + +  ++G  P  YV  
Sbjct: 1   VRWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGR-LHNKLGLFPANYVAP 55

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A Length = 58

 Score = 47.1 bits (113), Expect = 2e-07
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 210 VKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
           V+  R    YD  A     L    G++++V  ++    W G L+ K G FP  +V  +
Sbjct: 1   VRWARA--LYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPM 56

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A Length = 58

 Score = 47.1 bits (113), Expect = 2e-07
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 485 VKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 537
           V+  R    YD  A     L    G++++V  ++    W G L+ K G FP  +V  +
Sbjct: 1   VRWARA--LYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPM 56

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 69.6 bits (171), Expect = 3e-15
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
              +A Y F   + +DL  +  DI+ ++    E WW  + I   +G  P  +VQ+ S 
Sbjct: 8   NTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGK-IQDRIGFFPANFVQRLSG 64

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 69.6 bits (171), Expect = 3e-15
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 443
              +A Y F   + +DL  +  DI+ ++    E WW  + I   +G  P  +VQ+ S 
Sbjct: 8   NTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGK-IQDRIGFFPANFVQRLSG 64

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 47.6 bits (114), Expect = 1e-07
 Identities = 11/40 (27%), Positives = 22/40 (55%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 263
           L++  GDII + + +    W+G++  + G FP   V+ + 
Sbjct: 24  LEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQRLS 63

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 47.6 bits (114), Expect = 1e-07
 Identities = 11/40 (27%), Positives = 22/40 (55%)

Query: 499 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 538
           L++  GDII + + +    W+G++  + G FP   V+ + 
Sbjct: 24  LEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQRLS 63

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens} Length = 79

 Score = 70.0 bits (172), Expect = 3e-15
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 95  HYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGE 154
           H +              +  A +DF GN   +L FK  D++ ++S+  + W     + G 
Sbjct: 3   HKVHHHHHHHMDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGT-VRGA 61

Query: 155 VGSIPVPYVQK 165
            G  P+ +V+ 
Sbjct: 62  TGIFPLSFVKI 72

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens} Length = 79

 Score = 70.0 bits (172), Expect = 3e-15
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 370 HYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGE 429
           H +              +  A +DF GN   +L FK  D++ ++S+  + W     + G 
Sbjct: 3   HKVHHHHHHHMDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGT-VRGA 61

Query: 430 VGSIPVPYVQK 440
            G  P+ +V+ 
Sbjct: 62  TGIFPLSFVKI 72

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens} Length = 79

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 263
           L  + GD+I +         EG + G TG FP + V+ + 
Sbjct: 35  LNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILK 74

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens} Length = 79

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query: 499 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 538
           L  + GD+I +         EG + G TG FP + V+ + 
Sbjct: 35  LNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILK 74

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 69

 Score = 69.3 bits (170), Expect = 4e-15
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 6/60 (10%)

Query: 111 EKVIAKYDFDGNDPD-DLPFKKNDILIVVSKD-----EEHWWTAQNISGEVGSIPVPYVQ 164
               A YDF   +P+ ++  KK D++ ++SK      +  WW  +  +G +G IP  Y++
Sbjct: 8   HFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIE 67

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 69

 Score = 69.3 bits (170), Expect = 4e-15
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 6/60 (10%)

Query: 386 EKVIAKYDFDGNDPD-DLPFKKNDILIVVSKD-----EEHWWTAQNISGEVGSIPVPYVQ 439
               A YDF   +P+ ++  KK D++ ++SK      +  WW  +  +G +G IP  Y++
Sbjct: 8   HFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIE 67

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A Length = 69

 Score = 69.3 bits (170), Expect = 4e-15
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 111 EKVIAKYDFDGND-PDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYSE 168
            K  A YDF G+    +LP KK DI+ +   +   W  A+ +   + G +P  Y+  Y +
Sbjct: 3   PKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKD 62

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A Length = 69

 Score = 69.3 bits (170), Expect = 4e-15
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 386 EKVIAKYDFDGND-PDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYSE 443
            K  A YDF G+    +LP KK DI+ +   +   W  A+ +   + G +P  Y+  Y +
Sbjct: 3   PKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKD 62

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A Length = 69

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFI-PTNETMP 269
           L L+ GDI+ +++   +G    +L    K G  P  ++     T  T+P
Sbjct: 20  LPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKDTRNTVP 68

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A Length = 69

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 499 LKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIPTNETSV 544
           L L+ GDI+ +++   +G    +L    K G  P  ++        +V
Sbjct: 20  LPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKDTRNTV 67

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A Length = 60

 Score = 68.7 bits (169), Expect = 4e-15
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVS-KDEEHWWTAQNI-SGEVGSIPVPYVQK 165
           +E+ I +YDF     D+L  K  D + ++  K  + WW  Q + SG+ G +P  +++ 
Sbjct: 2   MERGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEP 59

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A Length = 60

 Score = 68.7 bits (169), Expect = 4e-15
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVS-KDEEHWWTAQNI-SGEVGSIPVPYVQK 440
           +E+ I +YDF     D+L  K  D + ++  K  + WW  Q + SG+ G +P  +++ 
Sbjct: 2   MERGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEP 59

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 69.8 bits (171), Expect = 4e-15
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 99  TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSI 158
           +   I+   K   KV A YDF+  + ++L FK  +I+IV+   + +WW  +     +G  
Sbjct: 6   SGSEIQLNNKVARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGE-NHRGIGLF 64

Query: 159 PVPYVQKYSE 168
           P  +V     
Sbjct: 65  PSNFVTTNLN 74

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 69.8 bits (171), Expect = 4e-15
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 374 TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSI 433
           +   I+   K   KV A YDF+  + ++L FK  +I+IV+   + +WW  +     +G  
Sbjct: 6   SGSEIQLNNKVARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGE-NHRGIGLF 64

Query: 434 PVPYVQKYSE 443
           P  +V     
Sbjct: 65  PSNFVTTNLN 74

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 47.0 bits (112), Expect = 4e-07
 Identities = 14/48 (29%), Positives = 19/48 (39%)

Query: 499 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVET 546
           L  + G+II V   +    W+GE +   G FP   V      ET    
Sbjct: 34  LTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFVTTNLNIETEAAA 81

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 46.3 bits (110), Expect = 8e-07
 Identities = 16/55 (29%), Positives = 22/55 (40%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETMPFHSSMKMTG 278
           L  + G+II V   +    W+GE +   G FP   V      ET     S   +G
Sbjct: 34  LTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFVTTNLNIETEAAAVSGPSSG 88

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A Length = 60

 Score = 68.7 bits (169), Expect = 4e-15
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           +  A +DF GN   +L FK  D++ ++S+  + W     + G  G  P+ +V+
Sbjct: 6   RAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGT-VRGATGIFPLSFVK 57

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A Length = 60

 Score = 68.7 bits (169), Expect = 4e-15
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
           +  A +DF GN   +L FK  D++ ++S+  + W     + G  G  P+ +V+
Sbjct: 6   RAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGT-VRGATGIFPLSFVK 57

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A Length = 60

 Score = 47.5 bits (114), Expect = 1e-07
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 210 VKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
           +K +R    +D T      L  + GD+I +         EG + G TG FP + V+ +
Sbjct: 2   IKHMRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKIL 59

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A Length = 60

 Score = 47.5 bits (114), Expect = 1e-07
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 485 VKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 537
           +K +R    +D T      L  + GD+I +         EG + G TG FP + V+ +
Sbjct: 2   IKHMRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKIL 59

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A Length = 92

 Score = 69.9 bits (171), Expect = 5e-15
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 6/65 (9%)

Query: 110 IEKVIAKYDFDGNDPD-DLPFKKNDILIVVSKD-----EEHWWTAQNISGEVGSIPVPYV 163
           +E   A YDF   +P+ ++  KK D++ ++SK      +  WW  +  +G +G IP  Y+
Sbjct: 14  LEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYI 73

Query: 164 QKYSE 168
           +    
Sbjct: 74  EIIKR 78

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A Length = 92

 Score = 69.9 bits (171), Expect = 5e-15
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 6/65 (9%)

Query: 385 IEKVIAKYDFDGNDPD-DLPFKKNDILIVVSKD-----EEHWWTAQNISGEVGSIPVPYV 438
           +E   A YDF   +P+ ++  KK D++ ++SK      +  WW  +  +G +G IP  Y+
Sbjct: 14  LEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYI 73

Query: 439 QKYSE 443
           +    
Sbjct: 74  EIIKR 78

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 68.9 bits (169), Expect = 5e-15
 Identities = 13/60 (21%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG 169
           +E+ +   ++   +  +L  +  +++ V+ K+E  WW     S E G +P  Y++  + G
Sbjct: 8   LEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVST-SEEQGWVPATYLEAQNSG 66

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 68.9 bits (169), Expect = 5e-15
 Identities = 13/60 (21%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG 444
           +E+ +   ++   +  +L  +  +++ V+ K+E  WW     S E G +P  Y++  + G
Sbjct: 8   LEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVST-SEEQGWVPATYLEAQNSG 66

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 48.8 bits (117), Expect = 6e-08
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 485 VKQVRVPNAYDKTA---LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNE 541
           ++Q  V + Y K     L L+ G+++ V + N +G W    + + G  P T++E   +  
Sbjct: 8   LEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQNSGP 67

Query: 542 TS 543
           +S
Sbjct: 68  SS 69

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 210 VKQVRVPNAYDKTA---LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT 264
           ++Q  V + Y K     L L+ G+++ V + N +G W    + + G  P T++E   +
Sbjct: 8   LEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQNS 65

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D Length = 60

 Score = 68.4 bits (168), Expect = 6e-15
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSK-DEEHWWTAQNISGEVGSIPVPYVQK 165
           +V A YD+DG + D+L FK  D L  + + DE+ W   +  SG++G  P  YV+ 
Sbjct: 5   RVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEA 59

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D Length = 60

 Score = 68.4 bits (168), Expect = 6e-15
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSK-DEEHWWTAQNISGEVGSIPVPYVQK 440
           +V A YD+DG + D+L FK  D L  + + DE+ W   +  SG++G  P  YV+ 
Sbjct: 5   RVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEA 59

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D Length = 60

 Score = 36.8 bits (86), Expect = 8e-04
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 7/51 (13%)

Query: 219 YDKTA-----LKLEIGDIIKVT-KTNINGQWEGELN-GKTGHFPFTHVEFI 262
           YD        L  + GD +    + +  G   G L+ G+ G +P  +VE I
Sbjct: 10  YDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEAI 60

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D Length = 60

 Score = 36.8 bits (86), Expect = 8e-04
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 7/51 (13%)

Query: 494 YDKTA-----LKLEIGDIIKVT-KTNINGQWEGELN-GKTGHFPFTHVEFI 537
           YD        L  + GD +    + +  G   G L+ G+ G +P  +VE I
Sbjct: 10  YDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEAI 60

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 75.9 bits (187), Expect = 7e-15
 Identities = 45/194 (23%), Positives = 72/194 (37%), Gaps = 33/194 (17%)

Query: 224 LKLEIGDIIKVTKTNINGQW---EGELNGKTGHFPFTHVEFIPTNETMPFHSSMKMTGTF 280
           L  + G+ +++   N  G W        G+TG+ P  +V    + +              
Sbjct: 19  LSFKKGERLQIVN-NTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQAEE----------- 66

Query: 281 DPHDRNSWYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVK-----ENNKVS 334
                  WYFG +TR+E++ +LL +E   G FLVR+S T  G Y L V      +   V 
Sbjct: 67  -------WYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVK 119

Query: 335 HYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLD-TSPLIKPATKTIEKVIAKYD 393
           HY I K+ +      Y      F+ L  L+A+Y  H       L      +  +      
Sbjct: 120 HYKIRKLDSGG---FYITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPTSKPQTQGLAK 176

Query: 394 FDGN-DPDDLPFKK 406
                  + L  + 
Sbjct: 177 DAWEIPRESLRLEV 190

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 72.5 bits (178), Expect = 1e-13
 Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 11/134 (8%)

Query: 6   DPHDRNSWYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVK-----ENNKVS 59
           D      WYFG +TR+E++ +LL +E   G FLVR+S T  G Y L V      +   V 
Sbjct: 60  DSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVK 119

Query: 60  HYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLD-TSPLIKPATKTIEKVIAKYD 118
           HY I K+ +      Y      F+ L  L+A+Y  H       L      +  +      
Sbjct: 120 HYKIRKLDSGG---FYITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPTSKPQTQGLAK 176

Query: 119 FDGN-DPDDLPFKK 131
                  + L  + 
Sbjct: 177 DAWEIPRESLRLEV 190

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 66.7 bits (163), Expect = 6e-12
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQK 165
           +   +A YD++     DL FKK + L +V+  E  WW A ++S G+ G IP  YV  
Sbjct: 2   VTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAP 58

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 66.7 bits (163), Expect = 6e-12
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQK 440
           +   +A YD++     DL FKK + L +V+  E  WW A ++S G+ G IP  YV  
Sbjct: 2   VTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAP 58

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 68.4 bits (168), Expect = 7e-15
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
           +   A Y F+   PD+L F++ DI+ +    + +WW      G  G IP  YV + S 
Sbjct: 8   KVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGT-SKGRTGLIPSNYVAEQSG 64

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 68.4 bits (168), Expect = 7e-15
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 443
           +   A Y F+   PD+L F++ DI+ +    + +WW      G  G IP  YV + S 
Sbjct: 8   KVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGT-SKGRTGLIPSNYVAEQSG 64

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 48.7 bits (117), Expect = 7e-08
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 263
           Y         L  E GDII +T  +    W+G   G+TG  P  +V    
Sbjct: 14  YTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQS 63

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 48.7 bits (117), Expect = 7e-08
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 494 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 538
           Y         L  E GDII +T  +    W+G   G+TG  P  +V    
Sbjct: 14  YTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQS 63

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A Length = 58

 Score = 68.0 bits (167), Expect = 7e-15
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
             V A +DFD  +  +L F++ D + V+   + +WW      G+ G  P  YV   +
Sbjct: 3   TYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGA-CHGQTGMFPRNYVTAVN 58

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A Length = 58

 Score = 68.0 bits (167), Expect = 7e-15
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 442
             V A +DFD  +  +L F++ D + V+   + +WW      G+ G  P  YV   +
Sbjct: 3   TYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGA-CHGQTGMFPRNYVTAVN 58

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A Length = 58

 Score = 46.8 bits (112), Expect = 2e-07
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
           +  +   L    GD I V   +    W+G  +G+TG FP  +V  +
Sbjct: 12  DPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTAV 57

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A Length = 58

 Score = 46.8 bits (112), Expect = 2e-07
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 492 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 537
           +  +   L    GD I V   +    W+G  +G+TG FP  +V  +
Sbjct: 12  DPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTAV 57

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus} Length = 68

 Score = 68.4 bits (168), Expect = 7e-15
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
            +  A  ++ G +P DL F K D++++  + +E+W+  + I+G  G  P   V+  S 
Sbjct: 8   PRAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGE-INGVSGIFPASSVEVISG 64

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus} Length = 68

 Score = 68.4 bits (168), Expect = 7e-15
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 443
            +  A  ++ G +P DL F K D++++  + +E+W+  + I+G  G  P   V+  S 
Sbjct: 8   PRAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGE-INGVSGIFPASSVEVISG 64

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus} Length = 68

 Score = 49.9 bits (120), Expect = 2e-08
 Identities = 15/40 (37%), Positives = 23/40 (57%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 263
           LK   GD+I + +      ++GE+NG +G FP + VE I 
Sbjct: 24  LKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEVIS 63

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus} Length = 68

 Score = 49.9 bits (120), Expect = 2e-08
 Identities = 15/40 (37%), Positives = 23/40 (57%)

Query: 499 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 538
           LK   GD+I + +      ++GE+NG +G FP + VE I 
Sbjct: 24  LKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEVIS 63

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens} Length = 90

 Score = 69.0 bits (169), Expect = 7e-15
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQKYSEG 169
             V+A YD+    PDDL F+K D ++V+ +  E WW A++++  + G IP  YV +   G
Sbjct: 4   IIVVALYDYVSWSPDDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVARVDSG 62

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens} Length = 90

 Score = 69.0 bits (169), Expect = 7e-15
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQKYSEG 444
             V+A YD+    PDDL F+K D ++V+ +  E WW A++++  + G IP  YV +   G
Sbjct: 4   IIVVALYDYVSWSPDDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVARVDSG 62

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 62

 Score = 68.0 bits (167), Expect = 8e-15
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 107 TKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 166
            K   +V A + ++   P+DL F++ DI++V+SK  E W   +   G+VG  P  +V+  
Sbjct: 2   LKKGSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGE-SKGKVGIFPKVFVEDS 60

Query: 167 S 167
           +
Sbjct: 61  A 61

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 62

 Score = 68.0 bits (167), Expect = 8e-15
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 382 TKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 441
            K   +V A + ++   P+DL F++ DI++V+SK  E W   +   G+VG  P  +V+  
Sbjct: 2   LKKGSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGE-SKGKVGIFPKVFVEDS 60

Query: 442 S 442
           +
Sbjct: 61  A 61

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 62

 Score = 49.1 bits (118), Expect = 3e-08
 Identities = 17/41 (41%), Positives = 19/41 (46%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT 264
           L+ + GDII V         EGE  GK G FP   VE   T
Sbjct: 22  LEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDSAT 62

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 62

 Score = 49.1 bits (118), Expect = 3e-08
 Identities = 17/41 (41%), Positives = 19/41 (46%)

Query: 499 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT 539
           L+ + GDII V         EGE  GK G FP   VE   T
Sbjct: 22  LEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDSAT 62

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A Length = 63

 Score = 68.0 bits (167), Expect = 8e-15
 Identities = 12/56 (21%), Positives = 20/56 (35%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 166
              +A YDF  +  + L   K + L V+  +    W         G +P  Y+   
Sbjct: 6   NLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYITPV 61

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A Length = 63

 Score = 68.0 bits (167), Expect = 8e-15
 Identities = 12/56 (21%), Positives = 20/56 (35%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 441
              +A YDF  +  + L   K + L V+  +    W         G +P  Y+   
Sbjct: 6   NLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYITPV 61

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A Length = 63

 Score = 37.2 bits (87), Expect = 6e-04
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 6/48 (12%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQW-EGELNGKTGHFPFTHVE 260
           YD  A     L +  G+ ++V   N NG+W E +     G  P  ++ 
Sbjct: 12  YDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYIT 59

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A Length = 63

 Score = 37.2 bits (87), Expect = 6e-04
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 6/48 (12%)

Query: 494 YDKTA-----LKLEIGDIIKVTKTNINGQW-EGELNGKTGHFPFTHVE 535
           YD  A     L +  G+ ++V   N NG+W E +     G  P  ++ 
Sbjct: 12  YDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYIT 59

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 68.5 bits (168), Expect = 8e-15
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
            ++    + IAK+D+ G    +L FKK   L++  +  + WW  +  +G  G IP  Y+ 
Sbjct: 4   GSSGEPIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGR-HNGIDGLIPHQYIV 62

Query: 165 KYSE 168
               
Sbjct: 63  VQDT 66

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 68.5 bits (168), Expect = 8e-15
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 380 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
            ++    + IAK+D+ G    +L FKK   L++  +  + WW  +  +G  G IP  Y+ 
Sbjct: 4   GSSGEPIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGR-HNGIDGLIPHQYIV 62

Query: 440 KYSE 443
               
Sbjct: 63  VQDT 66

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 5/55 (9%)

Query: 494 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS 543
           +D        L  + G  + + +   +  WEG  NG  G  P  ++    T+  S
Sbjct: 16  FDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVVQDTSGPS 70

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 46.9 bits (112), Expect = 4e-07
 Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 5/50 (10%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 263
           +D        L  + G  + + +   +  WEG  NG  G  P  ++    
Sbjct: 16  FDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVVQD 65

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A Length = 67

 Score = 68.0 bits (167), Expect = 8e-15
 Identities = 13/58 (22%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQ-NISGEVGSIPVPYVQKYSE 168
           + IAK++F+G+   ++ F+K + + ++ + +E+W+  +   +   G  P+ YV     
Sbjct: 8   EAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIKR 65

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A Length = 67

 Score = 68.0 bits (167), Expect = 8e-15
 Identities = 13/58 (22%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQ-NISGEVGSIPVPYVQKYSE 443
           + IAK++F+G+   ++ F+K + + ++ + +E+W+  +   +   G  P+ YV     
Sbjct: 8   EAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIKR 65

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A Length = 67

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNG--KTGHFPFTHVEFIP 263
           +    G+ I + +      +EG + G  + G FP T+V+ I 
Sbjct: 23  MSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIK 64

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A Length = 67

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 499 LKLEIGDIIKVTKTNINGQWEGELNG--KTGHFPFTHVEFIP 538
           +    G+ I + +      +EG + G  + G FP T+V+ I 
Sbjct: 23  MSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIK 64

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1 Length = 62

 Score = 68.0 bits (167), Expect = 9e-15
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 106 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           A     +V A YDF+  + ++L FK  +++ V+   + +WW  +      G  P  +V 
Sbjct: 1   AGHMARRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGE-NHRGTGLFPSNFVT 58

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1 Length = 62

 Score = 68.0 bits (167), Expect = 9e-15
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 381 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
           A     +V A YDF+  + ++L FK  +++ V+   + +WW  +      G  P  +V 
Sbjct: 1   AGHMARRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGE-NHRGTGLFPSNFVT 58

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1 Length = 62

 Score = 45.3 bits (108), Expect = 1e-06
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 206 AFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
           A    ++VR    YD  A     L  + G++I V   +    W+GE +  TG FP   V 
Sbjct: 1   AGHMARRVRA--LYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVT 58

Query: 261 FIPT 264
              +
Sbjct: 59  TDLS 62

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1 Length = 62

 Score = 45.3 bits (108), Expect = 1e-06
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 481 AFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 535
           A    ++VR    YD  A     L  + G++I V   +    W+GE +  TG FP   V 
Sbjct: 1   AGHMARRVRA--LYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVT 58

Query: 536 FIPT 539
              +
Sbjct: 59  TDLS 62

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens} Length = 65

 Score = 68.0 bits (167), Expect = 9e-15
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           ++    K+DF    P +L  +K DI+ +  + +++W   +   G +G  P  YV+
Sbjct: 1   MKAARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGE-HHGRLGIFPANYVE 54

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens} Length = 65

 Score = 68.0 bits (167), Expect = 9e-15
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
           ++    K+DF    P +L  +K DI+ +  + +++W   +   G +G  P  YV+
Sbjct: 1   MKAARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGE-HHGRLGIFPANYVE 54

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens} Length = 65

 Score = 54.9 bits (133), Expect = 4e-10
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 7/64 (10%)

Query: 485 VKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT 539
           +K  R+   +D  A     L L+ GDI+ + K       EGE +G+ G FP  +VE +P 
Sbjct: 1   MKAARL--KFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEVLPL 58

Query: 540 NETS 543
               
Sbjct: 59  EHHH 62

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens} Length = 65

 Score = 54.5 bits (132), Expect = 6e-10
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 7/62 (11%)

Query: 210 VKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT 264
           +K  R+   +D  A     L L+ GDI+ + K       EGE +G+ G FP  +VE +P 
Sbjct: 1   MKAARL--KFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEVLPL 58

Query: 265 NE 266
             
Sbjct: 59  EH 60

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 72

 Score = 68.2 bits (167), Expect = 1e-14
 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 104 KPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN----ISGEVGSIP 159
           +       K +  +DF     ++L F+  D+  V  K+E+ WW         +   G +P
Sbjct: 4   RDQAHLGPKYVGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVP 63

Query: 160 VPYVQKYS 167
             Y+ +  
Sbjct: 64  HNYLAERE 71

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 72

 Score = 68.2 bits (167), Expect = 1e-14
 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 379 KPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN----ISGEVGSIP 434
           +       K +  +DF     ++L F+  D+  V  K+E+ WW         +   G +P
Sbjct: 4   RDQAHLGPKYVGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVP 63

Query: 435 VPYVQKYS 442
             Y+ +  
Sbjct: 64  HNYLAERE 71

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A* Length = 175

 Score = 71.3 bits (174), Expect = 1e-14
 Identities = 32/157 (20%), Positives = 65/157 (41%), Gaps = 20/157 (12%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETMPFHSSMKM 276
                  L  E G+ +++ + +  G+W    +  TG   F    F+    ++        
Sbjct: 22  EPSHDGDLGFEKGEQLRILEQS--GEWWKAQSLTTGQEGFIPFNFVAKANSLEPEP---- 75

Query: 277 TGTFDPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSH 335
                      W+F  ++R++A+  LL+    +G+FL+R+S +  G++ L V++ ++   
Sbjct: 76  -----------WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQG 124

Query: 336 YIIN--KITNTEQQTCYKIGDKTFSDLPSLLAFYKVH 370
            ++   KI N +    Y     TF  L  L+  Y   
Sbjct: 125 EVVKHYKIRNLDNGGFYISPRITFPGLHELVRHYTNA 161

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A* Length = 175

 Score = 63.9 bits (155), Expect = 4e-12
 Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 3/92 (3%)

Query: 7   PHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN- 64
             +   W+F  ++R++A+  LL+    +G+FL+R+S +  G++ L V++ ++    ++  
Sbjct: 70  SLEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKH 129

Query: 65  -KITNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
            KI N +    Y     TF  L  L+  Y   
Sbjct: 130 YKIRNLDNGGFYISPRITFPGLHELVRHYTNA 161

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A* Length = 175

 Score = 53.5 bits (128), Expect = 1e-08
 Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 99  TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGS 157
           ++P   P    +  VIA + ++ +   DL F+K + L ++ +  E WW AQ++ +G+ G 
Sbjct: 3   SNPPASPLQDNL--VIALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGF 59

Query: 158 IPVPYVQKY 166
           IP  +V K 
Sbjct: 60  IPFNFVAKA 68

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A* Length = 175

 Score = 53.5 bits (128), Expect = 1e-08
 Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 374 TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGS 432
           ++P   P    +  VIA + ++ +   DL F+K + L ++ +  E WW AQ++ +G+ G 
Sbjct: 3   SNPPASPLQDNL--VIALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGF 59

Query: 433 IPVPYVQKY 441
           IP  +V K 
Sbjct: 60  IPFNFVAKA 68

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A Length = 76

 Score = 67.7 bits (166), Expect = 1e-14
 Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWW--TAQNISGEVGSIPVPY 162
            +   + +V   YD   ++ D+L F + +++IV  ++++ WW    +      G  PV +
Sbjct: 5   SSGNKVRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSF 64

Query: 163 VQKYSE 168
           V   S+
Sbjct: 65  VHILSD 70

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A Length = 76

 Score = 67.7 bits (166), Expect = 1e-14
 Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 380 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWW--TAQNISGEVGSIPVPY 437
            +   + +V   YD   ++ D+L F + +++IV  ++++ WW    +      G  PV +
Sbjct: 5   SSGNKVRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSF 64

Query: 438 VQKYSE 443
           V   S+
Sbjct: 65  VHILSD 70

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A Length = 76

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 10/72 (13%)

Query: 480 PAFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNG---KTGHFPF 531
            +  +V++V+    YD  A     L    G++I VT       W G + G   + G FP 
Sbjct: 5   SSGNKVRRVKT--IYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPV 62

Query: 532 THVEFIPTNETS 543
           + V  +  +  S
Sbjct: 63  SFVHILSDSGPS 74

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A Length = 76

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 10/67 (14%)

Query: 205 PAFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNG---KTGHFPF 256
            +  +V++V+    YD  A     L    G++I VT       W G + G   + G FP 
Sbjct: 5   SSGNKVRRVKT--IYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPV 62

Query: 257 THVEFIP 263
           + V  + 
Sbjct: 63  SFVHILS 69

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A Length = 74

 Score = 67.7 bits (166), Expect = 2e-14
 Identities = 22/66 (33%), Positives = 41/66 (62%), Gaps = 2/66 (3%)

Query: 104 KPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD-EEHWWTAQNISGEVGSIPVPY 162
           + A+    + IAKYDF     D+L FK+ DIL V++++ +++W+ A+ ++G+ G IP  Y
Sbjct: 3   RRASVGSMEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAE-LNGKDGFIPKNY 61

Query: 163 VQKYSE 168
           ++    
Sbjct: 62  IEMKPH 67

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A Length = 74

 Score = 67.7 bits (166), Expect = 2e-14
 Identities = 22/66 (33%), Positives = 41/66 (62%), Gaps = 2/66 (3%)

Query: 379 KPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD-EEHWWTAQNISGEVGSIPVPY 437
           + A+    + IAKYDF     D+L FK+ DIL V++++ +++W+ A+ ++G+ G IP  Y
Sbjct: 3   RRASVGSMEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAE-LNGKDGFIPKNY 61

Query: 438 VQKYSE 443
           ++    
Sbjct: 62  IEMKPH 67

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A Length = 74

 Score = 49.2 bits (118), Expect = 4e-08
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 6/58 (10%)

Query: 494 YDKTA-----LKLEIGDIIKVTKTNINGQW-EGELNGKTGHFPFTHVEFIPTNETSVE 545
           YD  A     L  + GDI+KV     +  W + ELNGK G  P  ++E  P  E  V 
Sbjct: 16  YDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPEFIVT 73

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A Length = 74

 Score = 49.2 bits (118), Expect = 5e-08
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQW-EGELNGKTGHFPFTHVEFIPTNE 266
           YD  A     L  + GDI+KV     +  W + ELNGK G  P  ++E  P  E
Sbjct: 16  YDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPE 69

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 71

 Score = 67.3 bits (165), Expect = 2e-14
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG 169
           EK +    +     D++ F+K   + V+ K+ E WW  +   G+ G  P  Y++K  + 
Sbjct: 9   EKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIR-YLGKEGWAPASYLKKAKDS 66

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 71

 Score = 67.3 bits (165), Expect = 2e-14
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG 444
           EK +    +     D++ F+K   + V+ K+ E WW  +   G+ G  P  Y++K  + 
Sbjct: 9   EKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIR-YLGKEGWAPASYLKKAKDS 66

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 71

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 11/45 (24%), Positives = 21/45 (46%)

Query: 499 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS 543
           +  E G  ++V + N+ G W     GK G  P ++++    +  S
Sbjct: 25  IGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKKAKDSGPS 69

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 71

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETMP 269
           +  E G  ++V + N+ G W     GK G  P ++++     ++ P
Sbjct: 25  IGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLK--KAKDSGP 68

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens} Length = 69

 Score = 67.3 bits (165), Expect = 2e-14
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
           ++  A YD+   +PD+L     DIL V+ + E+ WWT +  +G+ G +P  Y++K S 
Sbjct: 9   QEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVE-RNGQRGFVPGSYLEKLSG 65

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens} Length = 69

 Score = 67.3 bits (165), Expect = 2e-14
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 443
           ++  A YD+   +PD+L     DIL V+ + E+ WWT +  +G+ G +P  Y++K S 
Sbjct: 9   QEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVE-RNGQRGFVPGSYLEKLSG 65

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens} Length = 69

 Score = 51.1 bits (123), Expect = 9e-09
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 7/59 (11%)

Query: 210 VKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 263
            ++ R    YD TA     L L  GDI++V     +G W  E NG+ G  P +++E + 
Sbjct: 8   AQEYRA--LYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEKLS 64

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens} Length = 69

 Score = 51.1 bits (123), Expect = 9e-09
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 7/59 (11%)

Query: 485 VKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 538
            ++ R    YD TA     L L  GDI++V     +G W  E NG+ G  P +++E + 
Sbjct: 8   AQEYRA--LYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEKLS 64

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A Length = 68

 Score = 67.3 bits (165), Expect = 2e-14
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
               AK+DF      +LP +K DI+ +  + +++W+  +   G VG  P  Y++  S 
Sbjct: 8   RPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGE-HHGRVGIFPRTYIELLSG 64

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A Length = 68

 Score = 67.3 bits (165), Expect = 2e-14
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 443
               AK+DF      +LP +K DI+ +  + +++W+  +   G VG  P  Y++  S 
Sbjct: 8   RPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGE-HHGRVGIFPRTYIELLSG 64

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A Length = 68

 Score = 51.1 bits (123), Expect = 9e-09
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 263
           L L+ GDI+ + K      +EGE +G+ G FP T++E + 
Sbjct: 24  LPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIELLS 63

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A Length = 68

 Score = 51.1 bits (123), Expect = 9e-09
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 499 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 538
           L L+ GDI+ + K      +EGE +G+ G FP T++E + 
Sbjct: 24  LPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIELLS 63

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 67.4 bits (165), Expect = 2e-14
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH--WWTAQNISGEVGSIPVPY 162
                  +V A Y F+G  P DL F+  D + V+SK + H  WW  + + G+ G  P  Y
Sbjct: 12  GNLNQPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGK-LRGQTGIFPANY 70

Query: 163 VQKYSE 168
           V   S 
Sbjct: 71  VTMNSG 76

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 67.4 bits (165), Expect = 2e-14
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 380 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH--WWTAQNISGEVGSIPVPY 437
                  +V A Y F+G  P DL F+  D + V+SK + H  WW  + + G+ G  P  Y
Sbjct: 12  GNLNQPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGK-LRGQTGIFPANY 70

Query: 438 VQKYSE 443
           V   S 
Sbjct: 71  VTMNSG 76

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 224 LKLEIGDIIKVTK--TNINGQWEGELNGKTGHFPFTHVEFIP 263
           L  + GD I V     +    WEG+L G+TG FP  +V    
Sbjct: 34  LNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVTMNS 75

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 499 LKLEIGDIIKVTK--TNINGQWEGELNGKTGHFPFTHVEFIP 538
           L  + GD I V     +    WEG+L G+TG FP  +V    
Sbjct: 34  LNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVTMNS 75

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus} Length = 70

 Score = 66.9 bits (164), Expect = 2e-14
 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYSEG 169
              +A + +  + P++L  +K + + V+ K ++ W    ++ +G  G  P  YV   S  
Sbjct: 8   NMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPVSGP 67

Query: 170 MS 171
            S
Sbjct: 68  SS 69

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus} Length = 70

 Score = 66.9 bits (164), Expect = 2e-14
 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYSEG 444
              +A + +  + P++L  +K + + V+ K ++ W    ++ +G  G  P  YV   S  
Sbjct: 8   NMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPVSGP 67

Query: 445 MS 446
            S
Sbjct: 68  SS 69

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus} Length = 70

 Score = 40.3 bits (95), Expect = 7e-05
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVEFIP 263
           L L+ G+ I+V     +G  +G   L G+TG FP  +V  + 
Sbjct: 24  LDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPVS 65

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus} Length = 70

 Score = 40.3 bits (95), Expect = 7e-05
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 499 LKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVEFIP 538
           L L+ G+ I+V     +G  +G   L G+TG FP  +V  + 
Sbjct: 24  LDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPVS 65

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 67.4 bits (165), Expect = 3e-14
 Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 100 SPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIP 159
            P   P +  +EKV+A YD+  +  D+L F++  I+ V+ K+++ W+    ++G  G  P
Sbjct: 8   DPPWAPRS-YLEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGV-MNGVTGLFP 65

Query: 160 VPYVQKYSE 168
             YV+  S 
Sbjct: 66  GNYVESISG 74

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 67.4 bits (165), Expect = 3e-14
 Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 375 SPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIP 434
            P   P +  +EKV+A YD+  +  D+L F++  I+ V+ K+++ W+    ++G  G  P
Sbjct: 8   DPPWAPRS-YLEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGV-MNGVTGLFP 65

Query: 435 VPYVQKYSE 443
             YV+  S 
Sbjct: 66  GNYVESISG 74

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 51.6 bits (124), Expect = 8e-09
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 7/61 (11%)

Query: 208 ARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
           + +++V     YD T      L  + G II V K N +G +EG +NG TG FP  +VE I
Sbjct: 15  SYLEKVVA--IYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVESI 72

Query: 263 P 263
            
Sbjct: 73  S 73

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 51.6 bits (124), Expect = 8e-09
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 7/61 (11%)

Query: 483 ARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 537
           + +++V     YD T      L  + G II V K N +G +EG +NG TG FP  +VE I
Sbjct: 15  SYLEKVVA--IYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVESI 72

Query: 538 P 538
            
Sbjct: 73  S 73

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens} Length = 72

 Score = 67.0 bits (164), Expect = 3e-14
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 94  VHYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISG 153
           + +               KV A YDF+  + ++L FK  +I+ V+   + +WW  +    
Sbjct: 1   MGHHHHHHSHMNHQHEARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGE-THQ 59

Query: 154 EVGSIPVPYVQ 164
            +G  P  +V 
Sbjct: 60  GIGLFPSNFVT 70

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens} Length = 72

 Score = 67.0 bits (164), Expect = 3e-14
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 369 VHYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISG 428
           + +               KV A YDF+  + ++L FK  +I+ V+   + +WW  +    
Sbjct: 1   MGHHHHHHSHMNHQHEARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGE-THQ 59

Query: 429 EVGSIPVPYVQ 439
            +G  P  +V 
Sbjct: 60  GIGLFPSNFVT 70

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens} Length = 72

 Score = 46.5 bits (111), Expect = 5e-07
 Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 7/70 (10%)

Query: 196 RKTHLEVKLPAFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGK 250
              H    +      ++VR    YD  A     L  + G+II V   +    W+GE +  
Sbjct: 3   HHHHHHSHMNHQHEARKVRA--IYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQG 60

Query: 251 TGHFPFTHVE 260
            G FP   V 
Sbjct: 61  IGLFPSNFVT 70

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens} Length = 72

 Score = 46.5 bits (111), Expect = 5e-07
 Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 7/70 (10%)

Query: 471 RKTHLEVKLPAFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGK 525
              H    +      ++VR    YD  A     L  + G+II V   +    W+GE +  
Sbjct: 3   HHHHHHSHMNHQHEARKVRA--IYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQG 60

Query: 526 TGHFPFTHVE 535
            G FP   V 
Sbjct: 61  IGLFPSNFVT 70

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus} Length = 60

 Score = 66.5 bits (163), Expect = 3e-14
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 106 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
                 +  A Y +D  D D+L F  NDI+ ++ +D   WWT + + G+ G  P  YV K
Sbjct: 1   GPLGSPQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGR-LRGKQGLFPNNYVTK 59

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus} Length = 60

 Score = 66.5 bits (163), Expect = 3e-14
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 381 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 440
                 +  A Y +D  D D+L F  NDI+ ++ +D   WWT + + G+ G  P  YV K
Sbjct: 1   GPLGSPQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGR-LRGKQGLFPNNYVTK 59

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus} Length = 60

 Score = 50.7 bits (122), Expect = 1e-08
 Identities = 18/46 (39%), Positives = 23/46 (50%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
           +A D   L     DII + K + +G W G L GK G FP  +V  I
Sbjct: 15  DAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTKI 60

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus} Length = 60

 Score = 50.7 bits (122), Expect = 1e-08
 Identities = 18/46 (39%), Positives = 23/46 (50%)

Query: 492 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 537
           +A D   L     DII + K + +G W G L GK G FP  +V  I
Sbjct: 15  DAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTKI 60

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus} Length = 120

 Score = 68.4 bits (167), Expect = 3e-14
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI--SGEVGSIPVPYVQ 164
            +  Y+F     D+L     + L + +  +  W+ A+ I   G  G +PV YV+
Sbjct: 6   AVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVR 59

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus} Length = 120

 Score = 68.4 bits (167), Expect = 3e-14
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI--SGEVGSIPVPYVQ 439
            +  Y+F     D+L     + L + +  +  W+ A+ I   G  G +PV YV+
Sbjct: 6   AVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVR 59

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus} Length = 73

 Score = 66.5 bits (163), Expect = 4e-14
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 99  TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSI 158
             P   P         A YDF+  +  +L F++ D++ + ++ +E+W+    + G+ G  
Sbjct: 3   MDPEFMPPLD-QPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGM-LHGQSGFF 60

Query: 159 PVPYVQK 165
           P+ YVQ 
Sbjct: 61  PLSYVQV 67

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus} Length = 73

 Score = 66.5 bits (163), Expect = 4e-14
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 374 TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSI 433
             P   P         A YDF+  +  +L F++ D++ + ++ +E+W+    + G+ G  
Sbjct: 3   MDPEFMPPLD-QPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGM-LHGQSGFF 60

Query: 434 PVPYVQK 440
           P+ YVQ 
Sbjct: 61  PLSYVQV 67

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus} Length = 73

 Score = 50.7 bits (122), Expect = 1e-08
 Identities = 13/40 (32%), Positives = 23/40 (57%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 263
           L    GD+I +T       +EG L+G++G FP ++V+ + 
Sbjct: 30  LGFREGDLITLTNQIDENWYEGMLHGQSGFFPLSYVQVLV 69

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus} Length = 73

 Score = 50.7 bits (122), Expect = 1e-08
 Identities = 13/40 (32%), Positives = 23/40 (57%)

Query: 499 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 538
           L    GD+I +T       +EG L+G++G FP ++V+ + 
Sbjct: 30  LGFREGDLITLTNQIDENWYEGMLHGQSGFFPLSYVQVLV 69

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 66.4 bits (163), Expect = 4e-14
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
           E     + F     ++L     +I+ V+ K  ++W T    +G+ G +P  Y++  S
Sbjct: 8   EAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVM-FNGQKGLVPCNYLEPVS 63

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 66.4 bits (163), Expect = 4e-14
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 442
           E     + F     ++L     +I+ V+ K  ++W T    +G+ G +P  Y++  S
Sbjct: 8   EAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVM-FNGQKGLVPCNYLEPVS 63

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 48.3 bits (116), Expect = 1e-07
 Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 263
           +         L++  G+I+ V K   +       NG+ G  P  ++E + 
Sbjct: 14  FGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEPVS 63

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 48.3 bits (116), Expect = 1e-07
 Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 494 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 538
           +         L++  G+I+ V K   +       NG+ G  P  ++E + 
Sbjct: 14  FGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEPVS 63

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae} Length = 70

 Score = 66.2 bits (162), Expect = 5e-14
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 110 IEKVIAKYDFDGN--DPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           I K  A Y +D +  D  ++ F++N+IL V   +   WW A+  +GE G IP  YVQ 
Sbjct: 5   IYKAKALYPYDADDDDAYEISFEQNEILQVSDIEGR-WWKARRANGETGIIPSNYVQL 61

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae} Length = 70

 Score = 66.2 bits (162), Expect = 5e-14
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 385 IEKVIAKYDFDGN--DPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 440
           I K  A Y +D +  D  ++ F++N+IL V   +   WW A+  +GE G IP  YVQ 
Sbjct: 5   IYKAKALYPYDADDDDAYEISFEQNEILQVSDIEGR-WWKARRANGETGIIPSNYVQL 61

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae} Length = 70

 Score = 37.3 bits (87), Expect = 7e-04
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 220 DKTALKLEIGDIIKVTKTNINGQWEGE-LNGKTGHFPFTHVEFIPTNE 266
           D   +  E  +I++V+       W+    NG+TG  P  +V+ I   E
Sbjct: 20  DAYEISFEQNEILQVSDIE-GRWWKARRANGETGIIPSNYVQLIDGPE 66

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae} Length = 70

 Score = 37.3 bits (87), Expect = 7e-04
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 495 DKTALKLEIGDIIKVTKTNINGQWEGE-LNGKTGHFPFTHVEFIPTNE 541
           D   +  E  +I++V+       W+    NG+TG  P  +V+ I   E
Sbjct: 20  DAYEISFEQNEILQVSDIE-GRWWKARRANGETGIIPSNYVQLIDGPE 66

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 79

 Score = 65.9 bits (161), Expect = 7e-14
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 5/77 (6%)

Query: 99  TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD----EEHWWTAQNISGE 154
           +S       +  +   A Y F   +P++L    N  L ++          WW A+ ++G+
Sbjct: 2   SSGSSGSEAEGNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAE-VNGK 60

Query: 155 VGSIPVPYVQKYSEGMS 171
            G +P  Y++K   G S
Sbjct: 61  KGYVPSNYIRKTESGPS 77

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 79

 Score = 65.9 bits (161), Expect = 7e-14
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 5/77 (6%)

Query: 374 TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD----EEHWWTAQNISGE 429
           +S       +  +   A Y F   +P++L    N  L ++          WW A+ ++G+
Sbjct: 2   SSGSSGSEAEGNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAE-VNGK 60

Query: 430 VGSIPVPYVQKYSEGMS 446
            G +P  Y++K   G S
Sbjct: 61  KGYVPSNYIRKTESGPS 77

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 79

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 9/59 (15%)

Query: 494 YDKTA-----LKLEIGDIIKVT----KTNINGQWEGELNGKTGHFPFTHVEFIPTNETS 543
           Y   A     L +     +K+      T     W  E+NGK G+ P  ++    +  +S
Sbjct: 20  YTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTESGPSS 78

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 79

 Score = 37.7 bits (88), Expect = 6e-04
 Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 9/58 (15%)

Query: 219 YDKTA-----LKLEIGDIIKVT----KTNINGQWEGELNGKTGHFPFTHVEFIPTNET 267
           Y   A     L +     +K+      T     W  E+NGK G+ P  ++    +  +
Sbjct: 20  YTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTESGPS 77

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 65.8 bits (161), Expect = 8e-14
 Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
           +  A  DF+ +D D+L F+KNDI+ ++S+ +EH W  + ++G  G  P  +V+   E
Sbjct: 9   RAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGE-LNGLRGWFPAKFVEVLDE 64

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 65.8 bits (161), Expect = 8e-14
 Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 443
           +  A  DF+ +D D+L F+KNDI+ ++S+ +EH W  + ++G  G  P  +V+   E
Sbjct: 9   RAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGE-LNGLRGWFPAKFVEVLDE 64

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 15/50 (30%), Positives = 17/50 (34%)

Query: 499 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETNG 548
           L     DII +        W GELNG  G FP   VE +           
Sbjct: 24  LGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLDERSKEYSIAS 73

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 48.9 bits (117), Expect = 7e-08
 Identities = 17/55 (30%), Positives = 21/55 (38%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETMPFHSSMKMTG 278
           L     DII +        W GELNG  G FP   VE +         +S   +G
Sbjct: 24  LGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLDERSKEYSIASGPSSG 78

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A Length = 58

 Score = 64.9 bits (159), Expect = 9e-14
 Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           +V A YD+D    D+L FK+ D +IV  KD   WW  + ++G+ G +P  YVQ 
Sbjct: 5   QVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGE-LNGKRGWVPANYVQD 57

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A Length = 58

 Score = 64.9 bits (159), Expect = 9e-14
 Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 440
           +V A YD+D    D+L FK+ D +IV  KD   WW  + ++G+ G +P  YVQ 
Sbjct: 5   QVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGE-LNGKRGWVPANYVQD 57

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A Length = 58

 Score = 48.3 bits (116), Expect = 7e-08
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
           YD  A     L  + GD I V + +  G WEGELNGK G  P  +V+ I
Sbjct: 10  YDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQDI 58

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A Length = 58

 Score = 48.3 bits (116), Expect = 7e-08
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 494 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 537
           YD  A     L  + GD I V + +  G WEGELNGK G  P  +V+ I
Sbjct: 10  YDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQDI 58

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 68

 Score = 65.3 bits (160), Expect = 1e-13
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 106 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           +  +  +    + +   + D+L  K  DI+ VV + EE WW    ++G+ G  P  ++++
Sbjct: 3   SGSSGRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGV-LNGKTGMFPSNFIKE 61

Query: 166 YSE 168
            S 
Sbjct: 62  LSG 64

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 68

 Score = 65.3 bits (160), Expect = 1e-13
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 381 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 440
           +  +  +    + +   + D+L  K  DI+ VV + EE WW    ++G+ G  P  ++++
Sbjct: 3   SGSSGRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGV-LNGKTGMFPSNFIKE 61

Query: 441 YSE 443
            S 
Sbjct: 62  LSG 64

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 68

 Score = 54.9 bits (133), Expect = 4e-10
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 208 ARVKQVRV---PNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 263
           +  ++ +V       +   L+L++GDII+V      G WEG LNGKTG FP   ++ + 
Sbjct: 5   SSGRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELS 63

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 68

 Score = 54.9 bits (133), Expect = 4e-10
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 483 ARVKQVRV---PNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 538
           +  ++ +V       +   L+L++GDII+V      G WEG LNGKTG FP   ++ + 
Sbjct: 5   SSGRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELS 63

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A Length = 108

 Score = 66.3 bits (162), Expect = 1e-13
 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 2/78 (2%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI--SGEVGSIPVPYVQKYSEGMS 171
           I  YDF     D+L     + L + +     W+ A+ I   G  G +PV +V        
Sbjct: 9   IVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSIIDIATG 68

Query: 172 ILSLRNLHLDSSSHHVPQ 189
             +  ++  D  S ++P 
Sbjct: 69  YATGNDVIEDIKSVNLPT 86

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A Length = 108

 Score = 66.3 bits (162), Expect = 1e-13
 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 2/78 (2%)

Query: 389 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI--SGEVGSIPVPYVQKYSEGMS 446
           I  YDF     D+L     + L + +     W+ A+ I   G  G +PV +V        
Sbjct: 9   IVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSIIDIATG 68

Query: 447 ILSLRNLHLDSSSHHVPQ 464
             +  ++  D  S ++P 
Sbjct: 69  YATGNDVIEDIKSVNLPT 86

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A Length = 60

 Score = 64.9 bits (159), Expect = 1e-13
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 109 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH--WWTAQNISGEVGSIPVPYVQ 164
           +  K +A Y F G +  DLPF+K D++ ++ K +    WWT + ++G  G  P  YV+
Sbjct: 2   SSPKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGR-VNGREGIFPANYVE 58

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A Length = 60

 Score = 64.9 bits (159), Expect = 1e-13
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 384 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH--WWTAQNISGEVGSIPVPYVQ 439
           +  K +A Y F G +  DLPF+K D++ ++ K +    WWT + ++G  G  P  YV+
Sbjct: 2   SSPKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGR-VNGREGIFPANYVE 58

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A Length = 60

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 229 GDIIKVTKT--NINGQWEGELNGKTGHFPFTHVEFI 262
           GD+I + K   + N  W G +NG+ G FP  +VE +
Sbjct: 25  GDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV 60

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A Length = 60

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 504 GDIIKVTKT--NINGQWEGELNGKTGHFPFTHVEFI 537
           GD+I + K   + N  W G +NG+ G FP  +VE +
Sbjct: 25  GDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV 60

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens} Length = 68

 Score = 64.6 bits (158), Expect = 2e-13
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
                YDF+  +  +L FK+ DI+ + ++ +E+W+    I GE G  P+ YV+ 
Sbjct: 5   CCRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGM-IHGESGFFPINYVEV 57

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens} Length = 68

 Score = 64.6 bits (158), Expect = 2e-13
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 440
                YDF+  +  +L FK+ DI+ + ++ +E+W+    I GE G  P+ YV+ 
Sbjct: 5   CCRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGM-IHGESGFFPINYVEV 57

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens} Length = 68

 Score = 51.1 bits (123), Expect = 9e-09
 Identities = 17/48 (35%), Positives = 25/48 (52%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETMPFH 271
           L  + GDII +T       +EG ++G++G FP  +VE I   E    H
Sbjct: 20  LGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEVIVPLEHHHHH 67

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens} Length = 68

 Score = 50.7 bits (122), Expect = 1e-08
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 499 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETN 547
           L  + GDII +T       +EG ++G++G FP  +VE I   E     +
Sbjct: 20  LGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEVIVPLEHHHHHH 68

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens} Length = 92

 Score = 65.2 bits (159), Expect = 2e-13
 Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 98  DTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGS 157
                 K   +   +    + +   + D+L  K  DI+ VV + EE WW    ++G+ G 
Sbjct: 6   QQMGTNKRGERRRRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGV-LNGKTGM 64

Query: 158 IPVPYVQKYSE 168
            P  ++++ S 
Sbjct: 65  FPSNFIKELSG 75

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens} Length = 92

 Score = 65.2 bits (159), Expect = 2e-13
 Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 373 DTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGS 432
                 K   +   +    + +   + D+L  K  DI+ VV + EE WW    ++G+ G 
Sbjct: 6   QQMGTNKRGERRRRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGV-LNGKTGM 64

Query: 433 IPVPYVQKYSE 443
            P  ++++ S 
Sbjct: 65  FPSNFIKELSG 75

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens} Length = 92

 Score = 55.5 bits (134), Expect = 5e-10
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 7/70 (10%)

Query: 484 RVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 538
           R ++ +V  A+         L+L++GDII+V      G WEG LNGKTG FP   ++ + 
Sbjct: 17  RRRRCQV--AFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELS 74

Query: 539 TNETSVETNG 548
                +  + 
Sbjct: 75  GESDELGISQ 84

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens} Length = 92

 Score = 54.0 bits (130), Expect = 2e-09
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 7/63 (11%)

Query: 209 RVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 263
           R ++ +V  A+         L+L++GDII+V      G WEG LNGKTG FP   ++ + 
Sbjct: 17  RRRRCQV--AFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELS 74

Query: 264 TNE 266
              
Sbjct: 75  GES 77

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 69

 Score = 64.6 bits (158), Expect = 2e-13
 Identities = 17/61 (27%), Positives = 25/61 (40%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM 170
             V A YD+     D+L F +  ++  VSK+   WW     +      P  YV+  S   
Sbjct: 8   RTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDISGPS 67

Query: 171 S 171
           S
Sbjct: 68  S 68

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 69

 Score = 64.6 bits (158), Expect = 2e-13
 Identities = 17/61 (27%), Positives = 25/61 (40%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM 445
             V A YD+     D+L F +  ++  VSK+   WW     +      P  YV+  S   
Sbjct: 8   RTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDISGPS 67

Query: 446 S 446
           S
Sbjct: 68  S 68

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 69

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGK-TGHFPFTHVEFI 262
            A     L    G +I        G W+G+   +   +FP  +VE I
Sbjct: 17  KAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDI 63

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 69

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 492 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGK-TGHFPFTHVEFI 537
            A     L    G +I        G W+G+   +   +FP  +VE I
Sbjct: 17  KAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDI 63

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 76

 Score = 64.6 bits (158), Expect = 2e-13
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
            +      V A+++F   + D+L   K DI+ V   +E  WW    ++G  G  P  YV+
Sbjct: 5   SSGSHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGT-LNGRTGWFPSNYVR 63

Query: 165 KYSE 168
           +   
Sbjct: 64  EIKS 67

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 76

 Score = 64.6 bits (158), Expect = 2e-13
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 380 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
            +      V A+++F   + D+L   K DI+ V   +E  WW    ++G  G  P  YV+
Sbjct: 5   SSGSHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGT-LNGRTGWFPSNYVR 63

Query: 440 KYSE 443
           +   
Sbjct: 64  EIKS 67

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 76

 Score = 57.3 bits (139), Expect = 8e-11
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 7/74 (9%)

Query: 480 PAFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHV 534
            + +    V+    ++        L +  GDII VT+    G WEG LNG+TG FP  +V
Sbjct: 5   SSGSHQLIVKA--RFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYV 62

Query: 535 EFIPTNETSVETNG 548
             I ++E S  ++G
Sbjct: 63  REIKSSERSGPSSG 76

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 76

 Score = 54.2 bits (131), Expect = 1e-09
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 7/67 (10%)

Query: 205 PAFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHV 259
            + +    V+    ++        L +  GDII VT+    G WEG LNG+TG FP  +V
Sbjct: 5   SSGSHQLIVKA--RFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYV 62

Query: 260 EFIPTNE 266
             I ++E
Sbjct: 63  REIKSSE 69

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 64.6 bits (158), Expect = 2e-13
 Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSK---DEEHWWTAQNISGEVGSIPVP 161
             +  +  V A YD++G   D+L F +  I+ +++K   D++ +W  +  +G +G  P  
Sbjct: 3   SGSSGVCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGE-FNGRIGVFPSV 61

Query: 162 YVQKYSEGMS 171
            V++ S G S
Sbjct: 62  LVEELSSGPS 71

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 64.6 bits (158), Expect = 2e-13
 Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 380 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSK---DEEHWWTAQNISGEVGSIPVP 436
             +  +  V A YD++G   D+L F +  I+ +++K   D++ +W  +  +G +G  P  
Sbjct: 3   SGSSGVCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGE-FNGRIGVFPSV 61

Query: 437 YVQKYSEGMS 446
            V++ S G S
Sbjct: 62  LVEELSSGPS 71

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 48.5 bits (116), Expect = 9e-08
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 8/58 (13%)

Query: 494 YDKTA-----LKLEIGDIIKVTK---TNINGQWEGELNGKTGHFPFTHVEFIPTNETS 543
           YD        L    G II++      + +G WEGE NG+ G FP   VE + +  +S
Sbjct: 15  YDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEELSSGPSS 72

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 8/54 (14%)

Query: 219 YDKTA-----LKLEIGDIIKVTK---TNINGQWEGELNGKTGHFPFTHVEFIPT 264
           YD        L    G II++      + +G WEGE NG+ G FP   VE + +
Sbjct: 15  YDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEELSS 68

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A Length = 59

 Score = 63.8 bits (156), Expect = 2e-13
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
             V AK++F   + D+L F K D++ V   +E  WW     +G  G  P  YV++
Sbjct: 5   SVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGT-HNGRTGWFPSNYVRE 58

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A Length = 59

 Score = 63.8 bits (156), Expect = 2e-13
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 440
             V AK++F   + D+L F K D++ V   +E  WW     +G  G  P  YV++
Sbjct: 5   SVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGT-HNGRTGWFPSNYVRE 58

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A Length = 59

 Score = 50.7 bits (122), Expect = 9e-09
 Identities = 18/39 (46%), Positives = 22/39 (56%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
           L    GD+I VT+    G WEG  NG+TG FP  +V  I
Sbjct: 21  LSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI 59

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A Length = 59

 Score = 50.7 bits (122), Expect = 9e-09
 Identities = 18/39 (46%), Positives = 22/39 (56%)

Query: 499 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 537
           L    GD+I VT+    G WEG  NG+TG FP  +V  I
Sbjct: 21  LSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI 59

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens} Length = 65

 Score = 63.8 bits (156), Expect = 3e-13
 Identities = 12/59 (20%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
           + +    +++   + D+L  K  DI+ +  + EE WW+   ++ ++G  P  +V++   
Sbjct: 1   MRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGT-LNNKLGLFPSNFVKELEL 58

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens} Length = 65

 Score = 63.8 bits (156), Expect = 3e-13
 Identities = 12/59 (20%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 443
           + +    +++   + D+L  K  DI+ +  + EE WW+   ++ ++G  P  +V++   
Sbjct: 1   MRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGT-LNNKLGLFPSNFVKELEL 58

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens} Length = 65

 Score = 56.9 bits (138), Expect = 8e-11
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 7/64 (10%)

Query: 485 VKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT 539
           ++Q +V   ++        L+L++GDII + +    G W G LN K G FP   V+ +  
Sbjct: 1   MRQCKV--LFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELEL 58

Query: 540 NETS 543
               
Sbjct: 59  EHHH 62

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens} Length = 65

 Score = 56.9 bits (138), Expect = 8e-11
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 7/62 (11%)

Query: 210 VKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT 264
           ++Q +V   ++        L+L++GDII + +    G W G LN K G FP   V+ +  
Sbjct: 1   MRQCKV--LFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELEL 58

Query: 265 NE 266
             
Sbjct: 59  EH 60

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae} Length = 73

 Score = 63.9 bits (156), Expect = 3e-13
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKYSE 168
           ++ +A YDF+  + ++L   + DI+ +  K  + W  A+N    + G +P  +V     
Sbjct: 6   QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQP 64

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae} Length = 73

 Score = 63.9 bits (156), Expect = 3e-13
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKYSE 443
           ++ +A YDF+  + ++L   + DI+ +  K  + W  A+N    + G +P  +V     
Sbjct: 6   QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQP 64

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae} Length = 73

 Score = 40.0 bits (94), Expect = 9e-05
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVEFIP 263
           L+L  GDI+ ++  +  G    E     KTG  P   V +I 
Sbjct: 22  LRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQ 63

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae} Length = 73

 Score = 40.0 bits (94), Expect = 9e-05
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 499 LKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVEFIP 538
           L+L  GDI+ ++  +  G    E     KTG  P   V +I 
Sbjct: 22  LRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQ 63

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 63.9 bits (156), Expect = 3e-13
 Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 106 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSK--DEEHWWTAQNISGEVGSIPVPYV 163
           +  +    +A+Y+F   D  +L  ++ D++ + S+   ++ WW  +  +G +G  P  YV
Sbjct: 3   SGSSGGTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGE-TNGRIGWFPSTYV 61

Query: 164 QKYSE 168
           ++   
Sbjct: 62  EEEGI 66

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 63.9 bits (156), Expect = 3e-13
 Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 381 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSK--DEEHWWTAQNISGEVGSIPVPYV 438
           +  +    +A+Y+F   D  +L  ++ D++ + S+   ++ WW  +  +G +G  P  YV
Sbjct: 3   SGSSGGTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGE-TNGRIGWFPSTYV 61

Query: 439 QKYSE 443
           ++   
Sbjct: 62  EEEGI 66

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 48.9 bits (117), Expect = 6e-08
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 224 LKLEIGDIIKVTK--TNINGQWEGELNGKTGHFPFTHVEFIPTNE 266
           L L  GD++++        G W+GE NG+ G FP T+VE      
Sbjct: 24  LSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEEEGIQS 68

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 48.9 bits (117), Expect = 6e-08
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 499 LKLEIGDIIKVTK--TNINGQWEGELNGKTGHFPFTHVEFIPTNE 541
           L L  GD++++        G W+GE NG+ G FP T+VE      
Sbjct: 24  LSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEEEGIQS 68

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A Length = 73

 Score = 63.8 bits (156), Expect = 3e-13
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
              A YDF+  +  +L FK+ DI+ + ++ +E+W+    + G  G  P+ YV+
Sbjct: 9   CCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGM-LHGHSGFFPINYVE 60

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A Length = 73

 Score = 63.8 bits (156), Expect = 3e-13
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
              A YDF+  +  +L FK+ DI+ + ++ +E+W+    + G  G  P+ YV+
Sbjct: 9   CCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGM-LHGHSGFFPINYVE 60

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A Length = 73

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 17/50 (34%), Positives = 26/50 (52%)

Query: 499 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETNG 548
           L  + GDII +T       +EG L+G +G FP  +VE +     S  ++G
Sbjct: 24  LGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEILVALPHSGPSSG 73

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A Length = 73

 Score = 48.0 bits (115), Expect = 1e-07
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 263
           L  + GDII +T       +EG L+G +G FP  +VE + 
Sbjct: 24  LGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEILV 63

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens} Length = 58

 Score = 63.3 bits (155), Expect = 3e-13
 Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
           + I ++D+     D+L     +I+  + K++  WW  Q I+G  G  P  +V++  +
Sbjct: 3   EAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQ-INGRRGLFPDNFVREIKK 58

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens} Length = 58

 Score = 63.3 bits (155), Expect = 3e-13
 Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 443
           + I ++D+     D+L     +I+  + K++  WW  Q I+G  G  P  +V++  +
Sbjct: 3   EAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQ-INGRRGLFPDNFVREIKK 58

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens} Length = 58

 Score = 49.5 bits (119), Expect = 3e-08
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 7/58 (12%)

Query: 210 VKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
           + +  V   +D  A     L + +G+II   +    G WEG++NG+ G FP   V  I
Sbjct: 1   MVEAIV--EFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVREI 56

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens} Length = 58

 Score = 49.5 bits (119), Expect = 3e-08
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 7/58 (12%)

Query: 485 VKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 537
           + +  V   +D  A     L + +G+II   +    G WEG++NG+ G FP   V  I
Sbjct: 1   MVEAIV--EFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVREI 56

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae} Length = 59

 Score = 63.3 bits (155), Expect = 4e-13
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQ 164
           ++ +A YDF+  + ++L   + DI+ +  K  + W  A+N S  + G +P  +V 
Sbjct: 2   QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVS 56

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae} Length = 59

 Score = 63.3 bits (155), Expect = 4e-13
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQ 439
           ++ +A YDF+  + ++L   + DI+ +  K  + W  A+N S  + G +P  +V 
Sbjct: 2   QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVS 56

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae} Length = 59

 Score = 41.0 bits (97), Expect = 3e-05
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFI 262
           L+L  GDI+ ++  +  G    E     KTG  P   V +I
Sbjct: 18  LRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYI 58

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae} Length = 59

 Score = 41.0 bits (97), Expect = 3e-05
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 499 LKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFI 537
           L+L  GDI+ ++  +  G    E     KTG  P   V +I
Sbjct: 18  LRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYI 58

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A Length = 65

 Score = 63.4 bits (155), Expect = 4e-13
 Identities = 13/64 (20%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           P      +    +++   + D+L  K  DI+ +  + EE WW+   ++ ++G  P  +V+
Sbjct: 2   PLGSKKRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGT-LNNKLGLFPSNFVK 60

Query: 165 KYSE 168
           +   
Sbjct: 61  ELEV 64

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A Length = 65

 Score = 63.4 bits (155), Expect = 4e-13
 Identities = 13/64 (20%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 380 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
           P      +    +++   + D+L  K  DI+ +  + EE WW+   ++ ++G  P  +V+
Sbjct: 2   PLGSKKRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGT-LNNKLGLFPSNFVK 60

Query: 440 KYSE 443
           +   
Sbjct: 61  ELEV 64

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A Length = 65

 Score = 54.2 bits (131), Expect = 8e-10
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 205 PAFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHV 259
           P  ++ +Q +V   ++        L+L++GDII + +    G W G LN K G FP   V
Sbjct: 2   PLGSKKRQCKV--LFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFV 59

Query: 260 EFIP 263
           + + 
Sbjct: 60  KELE 63

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A Length = 65

 Score = 54.2 bits (131), Expect = 8e-10
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 480 PAFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHV 534
           P  ++ +Q +V   ++        L+L++GDII + +    G W G LN K G FP   V
Sbjct: 2   PLGSKKRQCKV--LFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFV 59

Query: 535 EFIP 538
           + + 
Sbjct: 60  KELE 63

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A Length = 64

 Score = 63.0 bits (154), Expect = 5e-13
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 106 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVPYV 163
           A    E     + + G + D+L F++ +I+ ++SK+  E  WW  + ++G+ G  P  + 
Sbjct: 2   AMGAKEYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGE-LNGKEGVFPDNFA 60

Query: 164 QKYS 167
            + S
Sbjct: 61  VQIS 64

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A Length = 64

 Score = 63.0 bits (154), Expect = 5e-13
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 381 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVPYV 438
           A    E     + + G + D+L F++ +I+ ++SK+  E  WW  + ++G+ G  P  + 
Sbjct: 2   AMGAKEYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGE-LNGKEGVFPDNFA 60

Query: 439 QKYS 442
            + S
Sbjct: 61  VQIS 64

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A Length = 64

 Score = 47.2 bits (113), Expect = 2e-07
 Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 9/64 (14%)

Query: 206 AFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTK--TNINGQWEGELNGKTGHFPFTH 258
           A    +  R    +  T      L    G+II +    T   G W+GELNGK G FP   
Sbjct: 2   AMGAKEYCRT--LFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNF 59

Query: 259 VEFI 262
              I
Sbjct: 60  AVQI 63

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A Length = 64

 Score = 47.2 bits (113), Expect = 2e-07
 Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 9/64 (14%)

Query: 481 AFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTK--TNINGQWEGELNGKTGHFPFTH 533
           A    +  R    +  T      L    G+II +    T   G W+GELNGK G FP   
Sbjct: 2   AMGAKEYCRT--LFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNF 59

Query: 534 VEFI 537
              I
Sbjct: 60  AVQI 63

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 63.2 bits (154), Expect = 5e-13
 Identities = 13/64 (20%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS---GEVGSIPVPYVQKYS 167
           +  ++  D++G++ +   F++   + V+ ++   WW  Q +       G +P  Y++K +
Sbjct: 11  DVYVSIADYEGDE-ETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKKN 69

Query: 168 EGMS 171
            G S
Sbjct: 70  SGPS 73

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 63.2 bits (154), Expect = 5e-13
 Identities = 13/64 (20%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS---GEVGSIPVPYVQKYS 442
           +  ++  D++G++ +   F++   + V+ ++   WW  Q +       G +P  Y++K +
Sbjct: 11  DVYVSIADYEGDE-ETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKKN 69

Query: 443 EGMS 446
            G S
Sbjct: 70  SGPS 73

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens} Length = 73

 Score = 63.1 bits (154), Expect = 7e-13
 Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 103 IKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPV 160
           +   TK+ +     + ++  + D+L  K+ DI+ +++KD  +  WW  + ++G  G  P 
Sbjct: 2   MDSRTKSKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGE-LNGRRGVFPD 60

Query: 161 PYVQK 165
            +V+ 
Sbjct: 61  NFVKL 65

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens} Length = 73

 Score = 63.1 bits (154), Expect = 7e-13
 Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 378 IKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPV 435
           +   TK+ +     + ++  + D+L  K+ DI+ +++KD  +  WW  + ++G  G  P 
Sbjct: 2   MDSRTKSKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGE-LNGRRGVFPD 60

Query: 436 PYVQK 440
            +V+ 
Sbjct: 61  NFVKL 65

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens} Length = 73

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 224 LKLEIGDIIKVTKTNI--NGQWEGELNGKTGHFPFTHVEFIPTNE 266
           L ++ GDI+ +   +    G WEGELNG+ G FP   V+ +P + 
Sbjct: 26  LTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPDF 70

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens} Length = 73

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 499 LKLEIGDIIKVTKTNI--NGQWEGELNGKTGHFPFTHVEFIPTNE 541
           L ++ GDI+ +   +    G WEGELNG+ G FP   V+ +P + 
Sbjct: 26  LTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPDF 70

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A Length = 62

 Score = 62.6 bits (153), Expect = 7e-13
 Identities = 15/59 (25%), Positives = 28/59 (47%)

Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
           +   I +YD+D    D+L  +  +I+  V K +E  W    ++G  G  P  +V++   
Sbjct: 1   MVDYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIKR 59

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A Length = 62

 Score = 62.6 bits (153), Expect = 7e-13
 Identities = 15/59 (25%), Positives = 28/59 (47%)

Query: 385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 443
           +   I +YD+D    D+L  +  +I+  V K +E  W    ++G  G  P  +V++   
Sbjct: 1   MVDYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIKR 59

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A Length = 62

 Score = 46.4 bits (111), Expect = 3e-07
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 6/53 (11%)

Query: 219 YDKTA-----LKLEIGDIIK-VTKTNINGQWEGELNGKTGHFPFTHVEFIPTN 265
           YD  A     L + +G+II+ V K    G  EGELNG+ G FP   V+ I   
Sbjct: 8   YDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIKRE 60

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A Length = 62

 Score = 46.4 bits (111), Expect = 3e-07
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 6/53 (11%)

Query: 494 YDKTA-----LKLEIGDIIK-VTKTNINGQWEGELNGKTGHFPFTHVEFIPTN 540
           YD  A     L + +G+II+ V K    G  EGELNG+ G FP   V+ I   
Sbjct: 8   YDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIKRE 60

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens} Length = 89

 Score = 63.3 bits (154), Expect = 8e-13
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 5/65 (7%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD-----EEHWWTAQNISGEVGSIP 159
             T       A +D++    ++L  ++ D + V+S+D     +E WWT Q  SG VG  P
Sbjct: 24  GTTPAGPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFP 83

Query: 160 VPYVQ 164
             YV 
Sbjct: 84  SNYVA 88

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens} Length = 89

 Score = 63.3 bits (154), Expect = 8e-13
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 5/65 (7%)

Query: 380 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD-----EEHWWTAQNISGEVGSIP 434
             T       A +D++    ++L  ++ D + V+S+D     +E WWT Q  SG VG  P
Sbjct: 24  GTTPAGPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFP 83

Query: 435 VPYVQ 439
             YV 
Sbjct: 84  SNYVA 88

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens} Length = 89

 Score = 37.9 bits (88), Expect = 8e-04
 Identities = 17/89 (19%), Positives = 27/89 (30%), Gaps = 13/89 (14%)

Query: 183 SSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKT 237
             HH          +      +              +D  A     L L  GD ++V   
Sbjct: 2   HHHHHHSSGVDLGTENLYFQSMGTTPAGPVWTA--VFDYEAAGDEELTLRRGDRVQVLSQ 59

Query: 238 NINGQ-----WEGEL-NGKTGHFPFTHVE 260
           +         W G+L +G+ G FP  +V 
Sbjct: 60  DCAVSGDEGWWTGQLPSGRVGVFPSNYVA 88

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens} Length = 89

 Score = 37.9 bits (88), Expect = 8e-04
 Identities = 17/89 (19%), Positives = 27/89 (30%), Gaps = 13/89 (14%)

Query: 458 SSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKT 512
             HH          +      +              +D  A     L L  GD ++V   
Sbjct: 2   HHHHHHSSGVDLGTENLYFQSMGTTPAGPVWTA--VFDYEAAGDEELTLRRGDRVQVLSQ 59

Query: 513 NINGQ-----WEGEL-NGKTGHFPFTHVE 535
           +         W G+L +G+ G FP  +V 
Sbjct: 60  DCAVSGDEGWWTGQLPSGRVGVFPSNYVA 88

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 63.1 bits (154), Expect = 8e-13
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
               A Y F     D+L  +K DI+I+  K EE WW    ++G+ G  P  YV++   
Sbjct: 8   RLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGS-LNGKKGHFPAAYVEELPS 64

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 63.1 bits (154), Expect = 8e-13
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 443
               A Y F     D+L  +K DI+I+  K EE WW    ++G+ G  P  YV++   
Sbjct: 8   RLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGS-LNGKKGHFPAAYVEELPS 64

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 55.8 bits (135), Expect = 3e-10
 Identities = 23/53 (43%), Positives = 31/53 (58%)

Query: 499 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETNGNGD 551
           L LE GDI+ + +    G W G LNGK GHFP  +VE +P+N  +  T  +G 
Sbjct: 24  LNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEELPSNAGNTATKASGP 76

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 52.7 bits (127), Expect = 3e-09
 Identities = 21/50 (42%), Positives = 28/50 (56%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETMPFHSS 273
           L LE GDI+ + +    G W G LNGK GHFP  +VE +P+N       +
Sbjct: 24  LNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEELPSNAGNTATKA 73

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} PDB: 2d1x_A Length = 65

 Score = 62.6 bits (153), Expect = 8e-13
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
            ++      IA YD+     D++ F  +DI+  +   ++ WW      G  G  P  YV+
Sbjct: 4   GSSDLGITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGV-CKGRYGLFPANYVE 62

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} PDB: 2d1x_A Length = 65

 Score = 62.6 bits (153), Expect = 8e-13
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 380 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
            ++      IA YD+     D++ F  +DI+  +   ++ WW      G  G  P  YV+
Sbjct: 4   GSSDLGITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGV-CKGRYGLFPANYVE 62

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} PDB: 2d1x_A Length = 65

 Score = 44.9 bits (107), Expect = 1e-06
 Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 205 PAFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHV 259
           P  +    +     YD  A     +  +  DII   +   +G W G   G+ G FP  +V
Sbjct: 2   PLGSSDLGITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYV 61

Query: 260 EFI 262
           E  
Sbjct: 62  ELR 64

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} PDB: 2d1x_A Length = 65

 Score = 44.9 bits (107), Expect = 1e-06
 Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 480 PAFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHV 534
           P  +    +     YD  A     +  +  DII   +   +G W G   G+ G FP  +V
Sbjct: 2   PLGSSDLGITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYV 61

Query: 535 EFI 537
           E  
Sbjct: 62  ELR 64

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 70

 Score = 62.7 bits (153), Expect = 9e-13
 Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 106 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVPYV 163
           +  + +     + ++  + D+L  K+ DI+ +++KD  +  WW  + ++G  G  P  +V
Sbjct: 3   SGSSGDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGE-LNGRRGVFPDNFV 61

Query: 164 QKYSE 168
           +  S 
Sbjct: 62  KLLSG 66

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 70

 Score = 62.7 bits (153), Expect = 9e-13
 Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 381 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVPYV 438
           +  + +     + ++  + D+L  K+ DI+ +++KD  +  WW  + ++G  G  P  +V
Sbjct: 3   SGSSGDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGE-LNGRRGVFPDNFV 61

Query: 439 QKYSE 443
           +  S 
Sbjct: 62  KLLSG 66

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 70

 Score = 48.4 bits (116), Expect = 9e-08
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 224 LKLEIGDIIKVTKTNI--NGQWEGELNGKTGHFPFTHVEFIP 263
           L ++ GDI+ +   +    G WEGELNG+ G FP   V+ + 
Sbjct: 24  LTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLS 65

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 70

 Score = 48.4 bits (116), Expect = 9e-08
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 499 LKLEIGDIIKVTKTNI--NGQWEGELNGKTGHFPFTHVEFIP 538
           L ++ GDI+ +   +    G WEGELNG+ G FP   V+ + 
Sbjct: 24  LTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLS 65

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A Length = 64

 Score = 62.2 bits (152), Expect = 9e-13
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
             V AK++F   + D+L F K D++ V   +E  WW     +G  G  P  YV++
Sbjct: 7   LVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGT-HNGRTGWFPSNYVRE 60

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A Length = 64

 Score = 62.2 bits (152), Expect = 9e-13
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 440
             V AK++F   + D+L F K D++ V   +E  WW     +G  G  P  YV++
Sbjct: 7   LVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGT-HNGRTGWFPSNYVRE 60

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A Length = 64

 Score = 52.6 bits (127), Expect = 3e-09
 Identities = 18/40 (45%), Positives = 22/40 (55%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 263
           L    GD+I VT+    G WEG  NG+TG FP  +V  I 
Sbjct: 23  LSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREIK 62

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A Length = 64

 Score = 52.6 bits (127), Expect = 3e-09
 Identities = 18/40 (45%), Positives = 22/40 (55%)

Query: 499 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 538
           L    GD+I VT+    G WEG  NG+TG FP  +V  I 
Sbjct: 23  LSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREIK 62

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus} Length = 93

 Score = 63.3 bits (154), Expect = 9e-13
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH----WWTAQNISGEVGSIPV 160
                     A+YDF     +++ F+  D+L +  K+++     W  A       G IP 
Sbjct: 12  SGEDDHVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPA 71

Query: 161 PYVQ 164
            YV+
Sbjct: 72  NYVK 75

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus} Length = 93

 Score = 63.3 bits (154), Expect = 9e-13
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 380 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH----WWTAQNISGEVGSIPV 435
                     A+YDF     +++ F+  D+L +  K+++     W  A       G IP 
Sbjct: 12  SGEDDHVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPA 71

Query: 436 PYVQ 439
            YV+
Sbjct: 72  NYVK 75

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus} Length = 93

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 10/70 (14%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNI----NGQWEGELNGK-TGHFPFTHVEFIPTNETM 268
           YD  A     +    GD++ +          G     L+G+ TG  P  +V+ +      
Sbjct: 24  YDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKILGKRRGR 83

Query: 269 PFHSSMKMTG 278
               S   +G
Sbjct: 84  KTIESGPSSG 93

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus} Length = 93

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 10/64 (15%)

Query: 494 YDKTA-----LKLEIGDIIKVTKTNI----NGQWEGELNGK-TGHFPFTHVEFIPTNETS 543
           YD  A     +    GD++ +          G     L+G+ TG  P  +V+ +      
Sbjct: 24  YDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKILGKRRGR 83

Query: 544 VETN 547
               
Sbjct: 84  KTIE 87

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A Length = 58

 Score = 61.8 bits (151), Expect = 1e-12
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQ 164
             A+YD+D  + ++L F +ND +I +   ++ WW  +    G  G  P  YV 
Sbjct: 3   ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVS 55

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A Length = 58

 Score = 61.8 bits (151), Expect = 1e-12
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQ 439
             A+YD+D  + ++L F +ND +I +   ++ WW  +    G  G  P  YV 
Sbjct: 3   ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVS 55

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A Length = 58

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 7/51 (13%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFI 262
           YD  A     L     D I   +   +  W GEL  +G  G FP  +V   
Sbjct: 7   YDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLG 57

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A Length = 58

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 7/51 (13%)

Query: 494 YDKTA-----LKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFI 537
           YD  A     L     D I   +   +  W GEL  +G  G FP  +V   
Sbjct: 7   YDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLG 57

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 62.4 bits (152), Expect = 1e-12
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
             +A YD+     D++ F  +DI+  +   ++ WW      G  G  P  YV+
Sbjct: 19  TAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGV-CKGRYGLFPANYVE 70

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 62.4 bits (152), Expect = 1e-12
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
             +A YD+     D++ F  +DI+  +   ++ WW      G  G  P  YV+
Sbjct: 19  TAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGV-CKGRYGLFPANYVE 70

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 494 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS 543
           YD  A     +  +  DII   +   +G W G   G+ G FP  +VE   +  +S
Sbjct: 24  YDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQSGPSS 78

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 45.8 bits (109), Expect = 9e-07
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 5/54 (9%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET 267
           YD  A     +  +  DII   +   +G W G   G+ G FP  +VE   +  +
Sbjct: 24  YDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQSGPS 77

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 81

 Score = 62.4 bits (152), Expect = 1e-12
 Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 104 KPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVP 161
              +    K    YD+D  +  +L    ++++ V S    +  W   +    + G +P+ 
Sbjct: 11  LKESSNNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGE-RGNQKGKVPIT 69

Query: 162 YVQKYSEG 169
           Y++  + G
Sbjct: 70  YLELLNSG 77

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 81

 Score = 62.4 bits (152), Expect = 1e-12
 Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 379 KPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVP 436
              +    K    YD+D  +  +L    ++++ V S    +  W   +    + G +P+ 
Sbjct: 11  LKESSNNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGE-RGNQKGKVPIT 69

Query: 437 YVQKYSEG 444
           Y++  + G
Sbjct: 70  YLELLNSG 77

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 81

 Score = 46.2 bits (110), Expect = 7e-07
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 9/72 (12%)

Query: 479 LPAFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNI--NGQWEGELNGKTGHFPF 531
           L   +  ++ RV   YD  A     L L   ++I V       +    GE   + G  P 
Sbjct: 11  LKESSNNRKARV--LYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPI 68

Query: 532 THVEFIPTNETS 543
           T++E + +  +S
Sbjct: 69  TYLELLNSGPSS 80

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 81

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 9/68 (13%)

Query: 204 LPAFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNI--NGQWEGELNGKTGHFPF 256
           L   +  ++ RV   YD  A     L L   ++I V       +    GE   + G  P 
Sbjct: 11  LKESSNNRKARV--LYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPI 68

Query: 257 THVEFIPT 264
           T++E + +
Sbjct: 69  TYLELLNS 76

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic} Length = 73

 Score = 62.0 bits (151), Expect = 1e-12
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG 169
                +      ++  KK DIL +++   + WW  + ++   G +P  YV+K   G
Sbjct: 4   PPLPPYSA-GGREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKKLDSG 57

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic} Length = 73

 Score = 62.0 bits (151), Expect = 1e-12
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 389 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG 444
                +      ++  KK DIL +++   + WW  + ++   G +P  YV+K   G
Sbjct: 4   PPLPPYSA-GGREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKKLDSG 57

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic} Length = 73

 Score = 43.1 bits (102), Expect = 6e-06
 Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 4/67 (5%)

Query: 494 YDKTA----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETNGN 549
              +A    + ++ GDI+ +  +     W+ E+N + G  P  +V+ + +          
Sbjct: 7   PPYSAGGREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKELVLAL 66

Query: 550 GDIHNST 556
            D    +
Sbjct: 67  YDYQEKS 73

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic} Length = 73

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 10/53 (18%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 219 YDKTA----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET 267
              +A    + ++ GDI+ +  +     W+ E+N + G  P  +V+ + +   
Sbjct: 7   PPYSAGGREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTG 59

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens} Length = 341

 Score = 68.1 bits (165), Expect = 2e-12
 Identities = 24/194 (12%), Positives = 60/194 (30%), Gaps = 17/194 (8%)

Query: 370 HYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGE 429
               +            +  A +DF GN   +L FK  D++ ++S+  + W     + G 
Sbjct: 159 VKSVSPQGNSVDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGT-VRGA 217

Query: 430 VGSIPVPYVQK---YSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVK 486
            G  P+ +V+    + E     +    +    +    +        +   +        +
Sbjct: 218 TGIFPLSFVKILKDFPEEDDPTNWLRCYYYEDTISTIKDIAVEEDLSSTPLLKDLLELTR 277

Query: 487 QVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGE---LNGKTGHFPFTHVEFIPTNETS 543
           +            +   GD++++           +   L  +   FP+         +  
Sbjct: 278 R-EFQREDIALNYRDAEGDLVRLLSDEDVALMVRQARGLPSQKRLFPW---------KLH 327

Query: 544 VETNGNGDIHNSTP 557
           +    N  ++N+ P
Sbjct: 328 ITQKDNYRVYNTMP 341

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens} Length = 341

 Score = 66.6 bits (161), Expect = 5e-12
 Identities = 21/167 (12%), Positives = 51/167 (30%), Gaps = 8/167 (4%)

Query: 95  HYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGE 154
               +            +  A +DF GN   +L FK  D++ ++S+  + W     + G 
Sbjct: 159 VKSVSPQGNSVDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGT-VRGA 217

Query: 155 VGSIPVPYVQK---YSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVK 211
            G  P+ +V+    + E     +    +    +    +        +   +        +
Sbjct: 218 TGIFPLSFVKILKDFPEEDDPTNWLRCYYYEDTISTIKDIAVEEDLSSTPLLKDLLELTR 277

Query: 212 QVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGE---LNGKTGHFP 255
           +            +   GD++++           +   L  +   FP
Sbjct: 278 R-EFQREDIALNYRDAEGDLVRLLSDEDVALMVRQARGLPSQKRLFP 323

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens} Length = 341

 Score = 48.1 bits (113), Expect = 5e-06
 Identities = 20/149 (13%), Positives = 45/149 (30%), Gaps = 6/149 (4%)

Query: 139 SKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKT 198
              E            + S+P  +V    +            +     + + +    +  
Sbjct: 102 EIAEMRIPALNAYMKSLLSLP-VWVLMDEDVRIFFYQSPYDSEQVPQALRRLRPRTRKVK 160

Query: 199 HLEVKLPAFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGH 253
            +  +  +  R+   R    +D T      L  + GD+I +         EG + G TG 
Sbjct: 161 SVSPQGNSVDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGI 220

Query: 254 FPFTHVEFIPTNETMPFHSSMKMTGTFDP 282
           FP + V+ +         ++      ++ 
Sbjct: 221 FPLSFVKILKDFPEEDDPTNWLRCYYYED 249

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A Length = 62

 Score = 61.7 bits (150), Expect = 2e-12
 Identities = 13/45 (28%), Positives = 23/45 (51%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQ 149
            +    E V+A YD+    P ++  KK DIL +++   + WW  +
Sbjct: 16  DSGTGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE 60

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A Length = 62

 Score = 61.7 bits (150), Expect = 2e-12
 Identities = 13/45 (28%), Positives = 23/45 (51%)

Query: 380 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQ 424
            +    E V+A YD+    P ++  KK DIL +++   + WW  +
Sbjct: 16  DSGTGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE 60

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 80

 Score = 62.1 bits (151), Expect = 2e-12
 Identities = 9/58 (15%), Positives = 17/58 (29%), Gaps = 1/58 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
              +    +      ++ F     + V+ K E  WW  +      G  P  Y+     
Sbjct: 9   TSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVR-FGELEGWAPSHYLVLDEN 65

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 80

 Score = 62.1 bits (151), Expect = 2e-12
 Identities = 9/58 (15%), Positives = 17/58 (29%), Gaps = 1/58 (1%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 443
              +    +      ++ F     + V+ K E  WW  +      G  P  Y+     
Sbjct: 9   TSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVR-FGELEGWAPSHYLVLDEN 65

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 80

 Score = 48.3 bits (115), Expect = 1e-07
 Identities = 10/68 (14%), Positives = 20/68 (29%), Gaps = 3/68 (4%)

Query: 486 KQVRVPNAYDKTA---LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET 542
                 +AY K     +    G  ++V +   +G W        G  P  ++      + 
Sbjct: 9   TSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLVLDENEQP 68

Query: 543 SVETNGNG 550
                 +G
Sbjct: 69  DPSGKESG 76

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 80

 Score = 47.5 bits (113), Expect = 2e-07
 Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 3/62 (4%)

Query: 211 KQVRVPNAYDKTA---LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET 267
                 +AY K     +    G  ++V +   +G W        G  P  ++      + 
Sbjct: 9   TSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLVLDENEQP 68

Query: 268 MP 269
            P
Sbjct: 69  DP 70

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A Length = 69

 Score = 61.9 bits (151), Expect = 2e-12
 Identities = 13/60 (21%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVPYVQKYSE 168
           +     + ++  + D+L  K+ DI+ +++KD  +  WW  + ++G  G  P  +V+    
Sbjct: 3   DYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGE-LNGRRGVFPDNFVKLLPP 61

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A Length = 69

 Score = 61.9 bits (151), Expect = 2e-12
 Identities = 13/60 (21%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVPYVQKYSE 443
           +     + ++  + D+L  K+ DI+ +++KD  +  WW  + ++G  G  P  +V+    
Sbjct: 3   DYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGE-LNGRRGVFPDNFVKLLPP 61

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A Length = 69

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 499 LKLEIGDIIKVTKTNI--NGQWEGELNGKTGHFPFTHVEFIPTNETSVETN 547
           L ++ GDI+ +   +    G WEGELNG+ G FP   V+ +P  E     +
Sbjct: 19  LTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPLEHHHHHH 69

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A Length = 69

 Score = 48.8 bits (117), Expect = 6e-08
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 224 LKLEIGDIIKVTKTNI--NGQWEGELNGKTGHFPFTHVEFIPTNE 266
           L ++ GDI+ +   +    G WEGELNG+ G FP   V+ +P  E
Sbjct: 19  LTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPLE 63

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85

 Score = 62.1 bits (151), Expect = 2e-12
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVPYVQKYSE 168
             VIA   +  ++   L F + D++ ++     E  W       G  G  P   VQ  + 
Sbjct: 9   GYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGS-AGGRSGLFPADIVQPAAA 67

Query: 169 G 169
            
Sbjct: 68  P 68

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85

 Score = 62.1 bits (151), Expect = 2e-12
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVPYVQKYSE 443
             VIA   +  ++   L F + D++ ++     E  W       G  G  P   VQ  + 
Sbjct: 9   GYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGS-AGGRSGLFPADIVQPAAA 67

Query: 444 G 444
            
Sbjct: 68  P 68

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85

 Score = 51.3 bits (123), Expect = 1e-08
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 2/67 (2%)

Query: 492 NAYDKTALKLEIGDIIKVTKTNI--NGQWEGELNGKTGHFPFTHVEFIPTNETSVETNGN 549
              + + L    GD+IK+        G   G   G++G FP   V+     + S      
Sbjct: 18  ITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQPAAAPDFSFSKEQR 77

Query: 550 GDIHNST 556
                S+
Sbjct: 78  SGSGPSS 84

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85

 Score = 49.0 bits (117), Expect = 8e-08
 Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNI--NGQWEGELNGKTGHFPFTHVEFIPTNE 266
              + + L    GD+IK+        G   G   G++G FP   V+     +
Sbjct: 18  ITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQPAAAPD 69

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 61.7 bits (150), Expect = 3e-12
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 104 KPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
           +           K+++     D+L   K   +IV+ K  + WW     +G+VG  P  YV
Sbjct: 11  ERLYDLNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGS-YNGQVGWFPSNYV 69

Query: 164 QKYSE 168
            +  +
Sbjct: 70  TEEGD 74

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 61.7 bits (150), Expect = 3e-12
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 379 KPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 438
           +           K+++     D+L   K   +IV+ K  + WW     +G+VG  P  YV
Sbjct: 11  ERLYDLNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGS-YNGQVGWFPSNYV 69

Query: 439 QKYSE 443
            +  +
Sbjct: 70  TEEGD 74

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 51.3 bits (123), Expect = 2e-08
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 5/55 (9%)

Query: 494 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS 543
           ++  A     L L  G  + V +   +G W G  NG+ G FP  +V     +   
Sbjct: 24  FNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVTEEGDSPLG 78

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 50.9 bits (122), Expect = 2e-08
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETMPFHSS 273
           ++  A     L L  G  + V +   +G W G  NG+ G FP  +V     +       S
Sbjct: 24  FNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVTEEGDSPLGDHVGS 83

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 61.1 bits (149), Expect = 3e-12
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSK---DEEHWWTAQNISGEVGSIPVPYVQKYS 167
               A YD   +  D+L F + DIL ++ +   + E WW    + G  G  P   +Q  S
Sbjct: 8   LLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCL-LHGRQGLAPANRLQILS 66

Query: 168 E 168
            
Sbjct: 67  G 67

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 61.1 bits (149), Expect = 3e-12
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSK---DEEHWWTAQNISGEVGSIPVPYVQKYS 442
               A YD   +  D+L F + DIL ++ +   + E WW    + G  G  P   +Q  S
Sbjct: 8   LLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCL-LHGRQGLAPANRLQILS 66

Query: 443 E 443
            
Sbjct: 67  G 67

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 8/53 (15%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQ---WEGELNGKTGHFPFTHVEFIP 263
           YD        L    GDI+ + + ++      W+  L+G+ G  P   ++ + 
Sbjct: 14  YDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQILS 66

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 8/53 (15%)

Query: 494 YDKTA-----LKLEIGDIIKVTKTNINGQ---WEGELNGKTGHFPFTHVEFIP 538
           YD        L    GDI+ + + ++      W+  L+G+ G  P   ++ + 
Sbjct: 14  YDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQILS 66

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 74

 Score = 60.8 bits (148), Expect = 4e-12
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
            +     K  A   +     + L F K+DI+ V+ +  E+WW  + + G  G  P  YV+
Sbjct: 5   SSGVENLKAQALCSWTAKKDNHLNFSKHDIITVLEQQ-ENWWFGE-VHGGRGWFPKSYVK 62

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 74

 Score = 60.8 bits (148), Expect = 4e-12
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 380 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
            +     K  A   +     + L F K+DI+ V+ +  E+WW  + + G  G  P  YV+
Sbjct: 5   SSGVENLKAQALCSWTAKKDNHLNFSKHDIITVLEQQ-ENWWFGE-VHGGRGWFPKSYVK 62

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 74

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 218 AYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETMP 269
           A     L     DII V +      W GE++G  G FP ++V+ IP +E+ P
Sbjct: 21  AKKDNHLNFSKHDIITVLEQQ-ENWWFGEVHGGRGWFPKSYVKIIPGSESGP 71

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 74

 Score = 49.6 bits (119), Expect = 3e-08
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 493 AYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVET 546
           A     L     DII V +      W GE++G  G FP ++V+ IP +E+   +
Sbjct: 21  AKKDNHLNFSKHDIITVLEQQ-ENWWFGEVHGGRGWFPKSYVKIIPGSESGPSS 73

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 72

 Score = 60.7 bits (148), Expect = 4e-12
 Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 2/66 (3%)

Query: 104 KPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSK-DEEHWWTAQNISGEVGSIPVPY 162
             +     K  A Y        +L F    +   V    E  W     ++G+ G IP  Y
Sbjct: 4   GSSGTPFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGT-LNGKTGLIPENY 62

Query: 163 VQKYSE 168
           V+  S 
Sbjct: 63  VEFLSG 68

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 72

 Score = 60.7 bits (148), Expect = 4e-12
 Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 2/66 (3%)

Query: 379 KPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSK-DEEHWWTAQNISGEVGSIPVPY 437
             +     K  A Y        +L F    +   V    E  W     ++G+ G IP  Y
Sbjct: 4   GSSGTPFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGT-LNGKTGLIPENY 62

Query: 438 VQKYSE 443
           V+  S 
Sbjct: 63  VEFLSG 68

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 72

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 6/51 (11%)

Query: 219 YDKTA-----LKLEIGDII-KVTKTNINGQWEGELNGKTGHFPFTHVEFIP 263
           Y   A     L    G +   V  +   G  EG LNGKTG  P  +VEF+ 
Sbjct: 17  YACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFLS 67

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 72

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 6/51 (11%)

Query: 494 YDKTA-----LKLEIGDII-KVTKTNINGQWEGELNGKTGHFPFTHVEFIP 538
           Y   A     L    G +   V  +   G  EG LNGKTG  P  +VEF+ 
Sbjct: 17  YACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFLS 67

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 60.8 bits (148), Expect = 5e-12
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 106 ATKTIEKVIAKYDFDGN-DPDDLPFKKNDILIVVSKD-EEHWWTAQNISGEVGSIPVPYV 163
           ++    K    YDF      ++L   + +I+ V + +    W   +N  GE G +P  YV
Sbjct: 5   SSGMATKARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYV 64

Query: 164 Q 164
           +
Sbjct: 65  E 65

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 60.8 bits (148), Expect = 5e-12
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 381 ATKTIEKVIAKYDFDGN-DPDDLPFKKNDILIVVSKD-EEHWWTAQNISGEVGSIPVPYV 438
           ++    K    YDF      ++L   + +I+ V + +    W   +N  GE G +P  YV
Sbjct: 5   SSGMATKARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYV 64

Query: 439 Q 439
           +
Sbjct: 65  E 65

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 8/60 (13%)

Query: 219 YDKTA------LKLEIGDIIKVTKTNI-NGQWEGEL-NGKTGHFPFTHVEFIPTNETMPF 270
           YD  A      L +  G+II VT  N+  G  EG+   G+ G  P  +VE +P +   PF
Sbjct: 16  YDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYVEILPNDGKDPF 75

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 8/58 (13%)

Query: 494 YDKTA------LKLEIGDIIKVTKTNI-NGQWEGEL-NGKTGHFPFTHVEFIPTNETS 543
           YD  A      L +  G+II VT  N+  G  EG+   G+ G  P  +VE +P +   
Sbjct: 16  YDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYVEILPNDGKD 73

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus} Length = 142

 Score = 62.8 bits (152), Expect = 6e-12
 Identities = 25/136 (18%), Positives = 49/136 (36%), Gaps = 3/136 (2%)

Query: 106 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD-EEHWWTAQNISGEVGSIPVPYVQ 164
              T     A+YDF   D  +L  K+ DI+ +++K  ++ WW  + I G +G  P  YV+
Sbjct: 1   GPGTFGTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGE-IYGRIGWFPSNYVE 59

Query: 165 KYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTAL 224
           +        +        +   +   +T     T   V      +V +    +       
Sbjct: 60  EDYSEYLPETGGGSGSSMTYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEW 119

Query: 225 KLEIGD-IIKVTKTNI 239
             +       VT+ ++
Sbjct: 120 TYDDATKTFTVTEHSL 135

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus} Length = 142

 Score = 62.8 bits (152), Expect = 6e-12
 Identities = 25/136 (18%), Positives = 49/136 (36%), Gaps = 3/136 (2%)

Query: 381 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD-EEHWWTAQNISGEVGSIPVPYVQ 439
              T     A+YDF   D  +L  K+ DI+ +++K  ++ WW  + I G +G  P  YV+
Sbjct: 1   GPGTFGTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGE-IYGRIGWFPSNYVE 59

Query: 440 KYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTAL 499
           +        +        +   +   +T     T   V      +V +    +       
Sbjct: 60  EDYSEYLPETGGGSGSSMTYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEW 119

Query: 500 KLEIGD-IIKVTKTNI 514
             +       VT+ ++
Sbjct: 120 TYDDATKTFTVTEHSL 135

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus} Length = 142

 Score = 46.6 bits (110), Expect = 2e-06
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 224 LKLEIGDIIKV-TKTNINGQWEGELNGKTGHFPFTHVEFIPTNETMPFHSSMKMTGTFDP 282
           L L+ GDIIK+  K    G W GE+ G+ G FP  +VE   +            + T+  
Sbjct: 22  LSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDYSEYLPETGGGSGSSMTYKL 81

Query: 283 HDR 285
              
Sbjct: 82  ILN 84

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus} Length = 142

 Score = 46.2 bits (109), Expect = 3e-06
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 499 LKLEIGDIIKV-TKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETNGNGDIHNSTP 557
           L L+ GDIIK+  K    G W GE+ G+ G FP  +VE   +        G+G       
Sbjct: 22  LSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDYSEYLPETGGGSGSSMTYKL 81

Query: 558 KTETPT 563
                T
Sbjct: 82  ILNGKT 87

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens} Length = 69

 Score = 60.0 bits (146), Expect = 7e-12
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH---WWTAQNISGEVGSIPVPYVQK 165
             A YD     PD+L F+K DI+ V+ +D +    WW    + G  G +P   ++ 
Sbjct: 6   AKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCS-LHGRQGIVPGNRLKI 60

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens} Length = 69

 Score = 60.0 bits (146), Expect = 7e-12
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH---WWTAQNISGEVGSIPVPYVQK 440
             A YD     PD+L F+K DI+ V+ +D +    WW    + G  G +P   ++ 
Sbjct: 6   AKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCS-LHGRQGIVPGNRLKI 60

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens} Length = 69

 Score = 46.2 bits (110), Expect = 5e-07
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 8/53 (15%)

Query: 219 YDKTA-----LKLEIGDIIKVTK---TNINGQWEGELNGKTGHFPFTHVEFIP 263
           YD  A     L    GDI+ V +     ++G W   L+G+ G  P   ++ + 
Sbjct: 10  YDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKILV 62

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens} Length = 69

 Score = 46.2 bits (110), Expect = 5e-07
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 8/53 (15%)

Query: 494 YDKTA-----LKLEIGDIIKVTK---TNINGQWEGELNGKTGHFPFTHVEFIP 538
           YD  A     L    GDI+ V +     ++G W   L+G+ G  P   ++ + 
Sbjct: 10  YDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKILV 62

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70

 Score = 60.0 bits (146), Expect = 8e-12
 Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYS 167
               A Y +   + D+L  ++ D + V+ + ++ W+   +  + + G+ P  YV   S
Sbjct: 8   TPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPVS 65

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70

 Score = 60.0 bits (146), Expect = 8e-12
 Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYS 442
               A Y +   + D+L  ++ D + V+ + ++ W+   +  + + G+ P  YV   S
Sbjct: 8   TPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPVS 65

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70

 Score = 39.9 bits (94), Expect = 8e-05
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIP 263
           L+L  GD + V +   +G + G      K G FP  +V  + 
Sbjct: 24  LELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPVS 65

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70

 Score = 39.9 bits (94), Expect = 8e-05
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 499 LKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIP 538
           L+L  GD + V +   +G + G      K G FP  +V  + 
Sbjct: 24  LELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPVS 65

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A Length = 68

 Score = 59.6 bits (145), Expect = 8e-12
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQ----NISGEVGSIPVPYVQ 164
           KV+A++ +  +  DDL F+K+  +IV S ++  W+  +    N     G  P  +V 
Sbjct: 9   KVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVA 65

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A Length = 68

 Score = 59.6 bits (145), Expect = 8e-12
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQ----NISGEVGSIPVPYVQ 439
           KV+A++ +  +  DDL F+K+  +IV S ++  W+  +    N     G  P  +V 
Sbjct: 9   KVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVA 65

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A Length = 68

 Score = 36.9 bits (86), Expect = 9e-04
 Identities = 11/42 (26%), Positives = 13/42 (30%), Gaps = 5/42 (11%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNG-----KTGHFPFTHVE 260
           L  E    I VT       + GE          G FP + V 
Sbjct: 24  LNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVA 65

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A Length = 68

 Score = 36.9 bits (86), Expect = 9e-04
 Identities = 11/42 (26%), Positives = 13/42 (30%), Gaps = 5/42 (11%)

Query: 499 LKLEIGDIIKVTKTNINGQWEGELNG-----KTGHFPFTHVE 535
           L  E    I VT       + GE          G FP + V 
Sbjct: 24  LNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVA 65

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A Length = 64

 Score = 59.5 bits (145), Expect = 9e-12
 Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 106 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQ-NISGEVGSIPVPYVQ 164
           A   +    A YD+   D D++ F+  D ++ V   ++ W       +G  G +P  Y++
Sbjct: 2   AMANLRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIE 61

Query: 165 KYS 167
             +
Sbjct: 62  FVN 64

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A Length = 64

 Score = 59.5 bits (145), Expect = 9e-12
 Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 381 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQ-NISGEVGSIPVPYVQ 439
           A   +    A YD+   D D++ F+  D ++ V   ++ W       +G  G +P  Y++
Sbjct: 2   AMANLRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIE 61

Query: 440 KYS 442
             +
Sbjct: 62  FVN 64

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A Length = 71

 Score = 59.6 bits (145), Expect = 9e-12
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 106 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSI-PVPYVQ 164
           +      V A +D+     D+L F K+ I+  V K E  WW      G+     P  YV+
Sbjct: 2   SPTFKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGD-YGGKKQLWFPSNYVE 60

Query: 165 KYSE 168
           +   
Sbjct: 61  EMVN 64

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A Length = 71

 Score = 59.6 bits (145), Expect = 9e-12
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 381 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSI-PVPYVQ 439
           +      V A +D+     D+L F K+ I+  V K E  WW      G+     P  YV+
Sbjct: 2   SPTFKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGD-YGGKKQLWFPSNYVE 60

Query: 440 KYSE 443
           +   
Sbjct: 61  EMVN 64

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A Length = 71

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGH-FPFTHVEFIPTNETM 268
            A  +  L      II+  +    G W G+  GK    FP  +VE +   E +
Sbjct: 16  KAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVNPEGI 68

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A Length = 71

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 492 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGH-FPFTHVEFIPTNE 541
            A  +  L      II+  +    G W G+  GK    FP  +VE +   E
Sbjct: 16  KAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVNPE 66

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae} Length = 54

 Score = 58.7 bits (143), Expect = 1e-11
 Identities = 13/53 (24%), Positives = 22/53 (41%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
            + A Y ++    D++     DI+ V+  D+   WT     G  G  P  Y +
Sbjct: 2   AMEAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYCK 54

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae} Length = 54

 Score = 58.7 bits (143), Expect = 1e-11
 Identities = 13/53 (24%), Positives = 22/53 (41%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
            + A Y ++    D++     DI+ V+  D+   WT     G  G  P  Y +
Sbjct: 2   AMEAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYCK 54

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae} Length = 54

 Score = 45.2 bits (108), Expect = 7e-07
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 6/48 (12%)

Query: 219 YDKTA-----LKLEIGDIIKVT-KTNINGQWEGELNGKTGHFPFTHVE 260
           Y   A     + ++ GDII V    + +G   GE +G  G FP ++ +
Sbjct: 7   YAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYCK 54

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae} Length = 54

 Score = 45.2 bits (108), Expect = 7e-07
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 6/48 (12%)

Query: 494 YDKTA-----LKLEIGDIIKVT-KTNINGQWEGELNGKTGHFPFTHVE 535
           Y   A     + ++ GDII V    + +G   GE +G  G FP ++ +
Sbjct: 7   YAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYCK 54

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 93

 Score = 59.8 bits (145), Expect = 1e-11
 Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 3/65 (4%)

Query: 106 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVPYV 163
            +       A Y F+  + D++ F   DI+ V  K   E  W       G  G  P  YV
Sbjct: 1   GSSGSSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGS-FQGNFGWFPCNYV 59

Query: 164 QKYSE 168
           +K   
Sbjct: 60  EKMPS 64

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 93

 Score = 59.8 bits (145), Expect = 1e-11
 Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 3/65 (4%)

Query: 381 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVPYV 438
            +       A Y F+  + D++ F   DI+ V  K   E  W       G  G  P  YV
Sbjct: 1   GSSGSSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGS-FQGNFGWFPCNYV 59

Query: 439 QKYSE 443
           +K   
Sbjct: 60  EKMPS 64

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 93

 Score = 52.1 bits (125), Expect = 8e-09
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 499 LKLEIGDIIKVTKTNI--NGQWEGELNGKTGHFPFTHVEFIPTNETS 543
           +    GDII+V +  +   G   G   G  G FP  +VE +P++E  
Sbjct: 22  MSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSSENE 68

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 93

 Score = 51.7 bits (124), Expect = 1e-08
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 224 LKLEIGDIIKVTKTNI--NGQWEGELNGKTGHFPFTHVEFIPTNETMP 269
           +    GDII+V +  +   G   G   G  G FP  +VE +P++E   
Sbjct: 22  MSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSSENEK 69

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 96

 Score = 59.5 bits (144), Expect = 2e-11
 Identities = 13/77 (16%), Positives = 31/77 (40%), Gaps = 7/77 (9%)

Query: 99  TSPLIKPATKTIEKVIAKYDFDG------NDPDDLPFKKNDILIVVSK-DEEHWWTAQNI 151
           +    +  +  +   +A+Y ++       N   +LP      L V    DE+ ++  + +
Sbjct: 6   SGTSKQRYSGKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELL 65

Query: 152 SGEVGSIPVPYVQKYSE 168
            G+ G +P  +V    +
Sbjct: 66  DGQRGLVPSNFVDFVQD 82

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 96

 Score = 59.5 bits (144), Expect = 2e-11
 Identities = 13/77 (16%), Positives = 31/77 (40%), Gaps = 7/77 (9%)

Query: 374 TSPLIKPATKTIEKVIAKYDFDG------NDPDDLPFKKNDILIVVSK-DEEHWWTAQNI 426
           +    +  +  +   +A+Y ++       N   +LP      L V    DE+ ++  + +
Sbjct: 6   SGTSKQRYSGKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELL 65

Query: 427 SGEVGSIPVPYVQKYSE 443
            G+ G +P  +V    +
Sbjct: 66  DGQRGLVPSNFVDFVQD 82

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 96

 Score = 48.0 bits (114), Expect = 2e-07
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 216 PNAYDKTALKLEIGDIIKVT-KTNINGQWEGE-LNGKTGHFPFTHVEFIPTNETMPFHSS 273
           PN   +  L L  G  + V    + +G +EGE L+G+ G  P   V+F+  NE+    +S
Sbjct: 32  PNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFVQDNESRLASTS 91

Query: 274 MKMTG 278
              +G
Sbjct: 92  GPSSG 96

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 96

 Score = 46.8 bits (111), Expect = 5e-07
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 491 PNAYDKTALKLEIGDIIKVT-KTNINGQWEGE-LNGKTGHFPFTHVEFIPTNETSVETN 547
           PN   +  L L  G  + V    + +G +EGE L+G+ G  P   V+F+  NE+ + + 
Sbjct: 32  PNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFVQDNESRLAST 90

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens} Length = 83

 Score = 58.7 bits (142), Expect = 3e-11
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 23/91 (25%)

Query: 182 SSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRV----PNAYDKTALKLEIGDIIKVTKT 237
           S  HH       P                 +VR      N +D TAL +  GD+I V + 
Sbjct: 3   SHHHHHHSSGLVP-------------RGSLKVRALKDFWNLHDPTALNVRAGDVITVLEQ 49

Query: 238 NINGQWEGELNG------KTGHFPFTHVEFI 262
           + +G+W+G ++       + G+FP   VE +
Sbjct: 50  HPDGRWKGHIHESQRGTDRIGYFPPGIVEVV 80

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens} Length = 83

 Score = 58.7 bits (142), Expect = 3e-11
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 23/91 (25%)

Query: 457 SSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRV----PNAYDKTALKLEIGDIIKVTKT 512
           S  HH       P                 +VR      N +D TAL +  GD+I V + 
Sbjct: 3   SHHHHHHSSGLVP-------------RGSLKVRALKDFWNLHDPTALNVRAGDVITVLEQ 49

Query: 513 NINGQWEGELNG------KTGHFPFTHVEFI 537
           + +G+W+G ++       + G+FP   VE +
Sbjct: 50  HPDGRWKGHIHESQRGTDRIGYFPPGIVEVV 80

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens} Length = 83

 Score = 57.6 bits (139), Expect = 8e-11
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 9/80 (11%)

Query: 95  HYLDTSPLIKPATKTIEKVIAKYDFDG-NDPDDLPFKKNDILIVVSKDEEHWWT-----A 148
           H+  +S L+        KV A  DF   +DP  L  +  D++ V+ +  +  W      +
Sbjct: 6   HHHHSSGLVPRG---SLKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHES 62

Query: 149 QNISGEVGSIPVPYVQKYSE 168
           Q  +  +G  P   V+  S+
Sbjct: 63  QRGTDRIGYFPPGIVEVVSK 82

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens} Length = 83

 Score = 57.6 bits (139), Expect = 8e-11
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 9/80 (11%)

Query: 370 HYLDTSPLIKPATKTIEKVIAKYDFDG-NDPDDLPFKKNDILIVVSKDEEHWWT-----A 423
           H+  +S L+        KV A  DF   +DP  L  +  D++ V+ +  +  W      +
Sbjct: 6   HHHHSSGLVPRG---SLKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHES 62

Query: 424 QNISGEVGSIPVPYVQKYSE 443
           Q  +  +G  P   V+  S+
Sbjct: 63  QRGTDRIGYFPPGIVEVVSK 82

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 58.5 bits (142), Expect = 3e-11
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 111 EKVIAKYDFD-GNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKYSE 168
            +V A   +    D D++ F K D+ IV ++ E+ W    N  + E G I    V++ S 
Sbjct: 8   RRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVSG 67

Query: 169 GMS 171
             S
Sbjct: 68  PSS 70

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 58.5 bits (142), Expect = 3e-11
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 386 EKVIAKYDFD-GNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKYSE 443
            +V A   +    D D++ F K D+ IV ++ E+ W    N  + E G I    V++ S 
Sbjct: 8   RRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVSG 67

Query: 444 GMS 446
             S
Sbjct: 68  PSS 70

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A Length = 65

 Score = 57.4 bits (139), Expect = 6e-11
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 111 EKVIAKYDFD-GNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQK 165
            +V A   +    D D++ F K D+ IV ++ E+ W    N+   E G I    V++
Sbjct: 6   RRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEE 62

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A Length = 65

 Score = 57.4 bits (139), Expect = 6e-11
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 386 EKVIAKYDFD-GNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQK 440
            +V A   +    D D++ F K D+ IV ++ E+ W    N+   E G I    V++
Sbjct: 6   RRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEE 62

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 58

 Score = 56.8 bits (138), Expect = 6e-11
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTA--QNISGEVGSIPVPYVQ 164
           +    Y +   D D++     D + +V++D    WT    + +GE G +P  Y++
Sbjct: 3   ENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR 57

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 58

 Score = 56.8 bits (138), Expect = 6e-11
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTA--QNISGEVGSIPVPYVQ 439
           +    Y +   D D++     D + +V++D    WT    + +GE G +P  Y++
Sbjct: 3   ENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR 57

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A* Length = 62

 Score = 56.8 bits (138), Expect = 7e-11
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYSE 168
           +   A + F     D+L  + +D L+V  + E++W+ A N+ +G  G  P  Y  + ++
Sbjct: 4   QTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVTK 62

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A* Length = 62

 Score = 56.8 bits (138), Expect = 7e-11
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYSE 443
           +   A + F     D+L  + +D L+V  + E++W+ A N+ +G  G  P  Y  + ++
Sbjct: 4   QTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVTK 62

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A* Length = 62

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 2/42 (4%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVEFIP 263
           L+LE+ D + V     +  +E      G  G FP  +   + 
Sbjct: 20  LELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVT 61

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A* Length = 62

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 2/42 (4%)

Query: 499 LKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVEFIP 538
           L+LE+ D + V     +  +E      G  G FP  +   + 
Sbjct: 20  LELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVT 61

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 97

 Score = 58.0 bits (140), Expect = 7e-11
 Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 8/75 (10%)

Query: 99  TSPLIKPATKTIEKVIAKYDFD--------GNDPDDLPFKKNDILIVVSKDEEHWWTAQN 150
           +              +A +D+D            ++LPFK+  I+ V    +   +    
Sbjct: 6   SGTDPGAEELPARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGE 65

Query: 151 ISGEVGSIPVPYVQK 165
               +G IP   V +
Sbjct: 66  TCARLGLIPCNMVSE 80

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 97

 Score = 58.0 bits (140), Expect = 7e-11
 Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 8/75 (10%)

Query: 374 TSPLIKPATKTIEKVIAKYDFD--------GNDPDDLPFKKNDILIVVSKDEEHWWTAQN 425
           +              +A +D+D            ++LPFK+  I+ V    +   +    
Sbjct: 6   SGTDPGAEELPARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGE 65

Query: 426 ISGEVGSIPVPYVQK 440
               +G IP   V +
Sbjct: 66  TCARLGLIPCNMVSE 80

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 97

 Score = 46.0 bits (109), Expect = 1e-06
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 224 LKLEIGDIIKVT-KTNINGQWEGELNGKTGHFPFTHVEFIPTNETMPFHSSMKMTG 278
           L  + G IIKV    + +G + GE   + G  P   V  I  ++      S   +G
Sbjct: 42  LPFKEGQIIKVYGDKDADGFYRGETCARLGLIPCNMVSEIQADDEEMMDQSGPSSG 97

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 97

 Score = 46.0 bits (109), Expect = 1e-06
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 499 LKLEIGDIIKVT-KTNINGQWEGELNGKTGHFPFTHVEFIPTNETS 543
           L  + G IIKV    + +G + GE   + G  P   V  I  ++  
Sbjct: 42  LPFKEGQIIKVYGDKDADGFYRGETCARLGLIPCNMVSEIQADDEE 87

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1 Length = 63

 Score = 56.6 bits (137), Expect = 8e-11
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 123 DPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLH 179
            P ++  KK DIL +++   + WW  + ++   G +P  YV+K   G     +  L+
Sbjct: 2   GPREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKKLDSGTGKELVLALY 57

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1 Length = 63

 Score = 56.6 bits (137), Expect = 8e-11
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 398 DPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLH 454
            P ++  KK DIL +++   + WW  + ++   G +P  YV+K   G     +  L+
Sbjct: 2   GPREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKKLDSGTGKELVLALY 57

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1 Length = 63

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 9/45 (20%), Positives = 22/45 (48%)

Query: 499 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS 543
           + ++ GDI+ +  +     W+ E+N + G  P  +V+ + +    
Sbjct: 6   VTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGK 50

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1 Length = 63

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 9/44 (20%), Positives = 22/44 (50%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET 267
           + ++ GDI+ +  +     W+ E+N + G  P  +V+ + +   
Sbjct: 6   VTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTG 49

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A Length = 61

 Score = 56.5 bits (137), Expect = 1e-10
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
             V A +D+     D+L F K+ I+  V K +  WW       +    P  YV++
Sbjct: 4   SAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEE 58

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A Length = 61

 Score = 56.5 bits (137), Expect = 1e-10
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 440
             V A +D+     D+L F K+ I+  V K +  WW       +    P  YV++
Sbjct: 4   SAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEE 58

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A Length = 61

 Score = 43.0 bits (102), Expect = 6e-06
 Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGH-FPFTHVEFIP 263
            A  +  L      II+  +    G W G+  GK    FP  +VE + 
Sbjct: 13  KAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEMI 60

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A Length = 61

 Score = 43.0 bits (102), Expect = 6e-06
 Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 492 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGH-FPFTHVEFIP 538
            A  +  L      II+  +    G W G+  GK    FP  +VE + 
Sbjct: 13  KAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEMI 60

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 80

 Score = 55.9 bits (135), Expect = 3e-10
 Identities = 9/63 (14%), Positives = 24/63 (38%), Gaps = 4/63 (6%)

Query: 106 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWW----TAQNISGEVGSIPVP 161
           +  + E       +  +  + L      +++++ K+   WW     A+    + G  P  
Sbjct: 3   SGSSGEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPAS 62

Query: 162 YVQ 164
           +V+
Sbjct: 63  HVK 65

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 80

 Score = 55.9 bits (135), Expect = 3e-10
 Identities = 9/63 (14%), Positives = 24/63 (38%), Gaps = 4/63 (6%)

Query: 381 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWW----TAQNISGEVGSIPVP 436
           +  + E       +  +  + L      +++++ K+   WW     A+    + G  P  
Sbjct: 3   SGSSGEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPAS 62

Query: 437 YVQ 439
           +V+
Sbjct: 63  HVK 65

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 80

 Score = 50.1 bits (120), Expect = 3e-08
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)

Query: 499 LKLEIGDIIKVTKTNINGQWEGELNGK-----TGHFPFTHVEFIPTNETSVETNGNG 550
           L L  G +I + K N +G W+GEL  +      G FP +HV+ +  +        +G
Sbjct: 24  LSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGPSSERASGPSSG 80

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 80

 Score = 48.6 bits (116), Expect = 9e-08
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGK-----TGHFPFTHVEFIPTNETMPFHSS 273
           L L  G +I + K N +G W+GEL  +      G FP +HV+ +  +       S
Sbjct: 24  LSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGPSSERASGPS 78

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus} Length = 71

 Score = 55.4 bits (134), Expect = 3e-10
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYSE 168
           +   A + F     D+L  + +D L+V  + E++W+ A N+ +G  G  P  Y  + ++
Sbjct: 7   QTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVTK 65

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus} Length = 71

 Score = 55.4 bits (134), Expect = 3e-10
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYSE 443
           +   A + F     D+L  + +D L+V  + E++W+ A N+ +G  G  P  Y  + ++
Sbjct: 7   QTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVTK 65

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus} Length = 71

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 2/42 (4%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVEFIP 263
           L+LE+ D + V     +  +E      G  G FP  +   + 
Sbjct: 23  LELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVT 64

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus} Length = 71

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 2/42 (4%)

Query: 499 LKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVEFIP 538
           L+LE+ D + V     +  +E      G  G FP  +   + 
Sbjct: 23  LELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVT 64

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 55.5 bits (134), Expect = 4e-10
 Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 105 PATKTIEKVIAKYDFDGNDP-------DDLPFKKNDILIVVSK-DEEHWWTAQNISGEVG 156
            +  + + +IA  D+D  D          L  +  D+++V    D++ ++  + + G  G
Sbjct: 2   SSGSSGKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGE-LGGHRG 60

Query: 157 SIPVPYVQKYSE 168
            +P   +   S 
Sbjct: 61  LVPAHLLDHMSL 72

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 55.5 bits (134), Expect = 4e-10
 Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 380 PATKTIEKVIAKYDFDGNDP-------DDLPFKKNDILIVVSK-DEEHWWTAQNISGEVG 431
            +  + + +IA  D+D  D          L  +  D+++V    D++ ++  + + G  G
Sbjct: 2   SSGSSGKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGE-LGGHRG 60

Query: 432 SIPVPYVQKYSE 443
            +P   +   S 
Sbjct: 61  LVPAHLLDHMSL 72

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 50.5 bits (121), Expect = 2e-08
 Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 212 QVRVPNAYDKTALKLEIGDIIKVT-KTNINGQWEGELNGKTGHFPFTHVEFIPTN 265
                    K  L L  GD++ V    +  G + GEL G  G  P   ++ +  +
Sbjct: 19  GDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLDHMSLH 73

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 50.5 bits (121), Expect = 2e-08
 Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 487 QVRVPNAYDKTALKLEIGDIIKVT-KTNINGQWEGELNGKTGHFPFTHVEFIPTN 540
                    K  L L  GD++ V    +  G + GEL G  G  P   ++ +  +
Sbjct: 19  GDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLDHMSLH 73

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 55.1 bits (133), Expect = 4e-10
 Identities = 12/64 (18%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 109 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQKYS 167
            + +V     F     D++  ++ D+++V+ ++ + W   + +  GE G  P  + +  S
Sbjct: 16  DLPQVEITKAFFAKQADEVTLQQADVVLVLQQE-DGWLYGERLRDGETGWFPEDFARFIS 74

Query: 168 EGMS 171
              S
Sbjct: 75  GPSS 78

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 55.1 bits (133), Expect = 4e-10
 Identities = 12/64 (18%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 384 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQKYS 442
            + +V     F     D++  ++ D+++V+ ++ + W   + +  GE G  P  + +  S
Sbjct: 16  DLPQVEITKAFFAKQADEVTLQQADVVLVLQQE-DGWLYGERLRDGETGWFPEDFARFIS 74

Query: 443 EGMS 446
              S
Sbjct: 75  GPSS 78

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 46.6 bits (111), Expect = 5e-07
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 6/57 (10%)

Query: 212 QVRVPNAYDKTA---LKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVEFIP 263
           QV +  A+       + L+  D++ V +   +G   GE   +G+TG FP     FI 
Sbjct: 19  QVEITKAFFAKQADEVTLQQADVVLVLQQE-DGWLYGERLRDGETGWFPEDFARFIS 74

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 46.6 bits (111), Expect = 5e-07
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 6/57 (10%)

Query: 487 QVRVPNAYDKTA---LKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVEFIP 538
           QV +  A+       + L+  D++ V +   +G   GE   +G+TG FP     FI 
Sbjct: 19  QVEITKAFFAKQADEVTLQQADVVLVLQQE-DGWLYGERLRDGETGWFPEDFARFIS 74

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A Length = 58

 Score = 53.7 bits (129), Expect = 8e-10
 Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
               + +     D+L       + V+    + WW     +G++G  P  YV +  +
Sbjct: 4   AFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGS-YNGQIGWFPSNYVLEEVD 58

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A Length = 58

 Score = 53.7 bits (129), Expect = 8e-10
 Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 443
               + +     D+L       + V+    + WW     +G++G  P  YV +  +
Sbjct: 4   AFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGS-YNGQIGWFPSNYVLEEVD 58

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A Length = 58

 Score = 41.0 bits (96), Expect = 3e-05
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 5/47 (10%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
           +   A     L L  G  + V +   +G W G  NG+ G FP  +V 
Sbjct: 8   FAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYVL 54

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A Length = 58

 Score = 41.0 bits (96), Expect = 3e-05
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 5/47 (10%)

Query: 494 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 535
           +   A     L L  G  + V +   +G W G  NG+ G FP  +V 
Sbjct: 8   FAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYVL 54

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens} Length = 119

 Score = 55.8 bits (134), Expect = 9e-10
 Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 3/63 (4%)

Query: 104 KPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI--SGEVGSIPVP 161
             +       +A Y+F G+    L  +  D++ +       W+    I      G  P  
Sbjct: 53  GSSGDKERHGVAIYNFQGSGAPQLSLQIGDVVRIQETC-GDWYRGYLIKHKMLQGIFPKS 111

Query: 162 YVQ 164
           ++ 
Sbjct: 112 FIH 114

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens} Length = 119

 Score = 55.8 bits (134), Expect = 9e-10
 Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 3/63 (4%)

Query: 379 KPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI--SGEVGSIPVP 436
             +       +A Y+F G+    L  +  D++ +       W+    I      G  P  
Sbjct: 53  GSSGDKERHGVAIYNFQGSGAPQLSLQIGDVVRIQETC-GDWYRGYLIKHKMLQGIFPKS 111

Query: 437 YVQ 439
           ++ 
Sbjct: 112 FIH 114

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1 Length = 72

 Score = 53.9 bits (130), Expect = 1e-09
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 111 EKVIAKYDFD-GNDPDDLPFKKNDILIVVSKDEEH-WWTAQNI-SGEVGSIPVPYVQKYS 167
           +KV   +    GN+   L F + D+L ++  +E+  W   ++  +   G  P  Y +  S
Sbjct: 8   QKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLS 67

Query: 168 E 168
            
Sbjct: 68  G 68

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1 Length = 72

 Score = 53.9 bits (130), Expect = 1e-09
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 386 EKVIAKYDFD-GNDPDDLPFKKNDILIVVSKDEEH-WWTAQNI-SGEVGSIPVPYVQKYS 442
           +KV   +    GN+   L F + D+L ++  +E+  W   ++  +   G  P  Y +  S
Sbjct: 8   QKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLS 67

Query: 443 E 443
            
Sbjct: 68  G 68

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1 Length = 72

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 3/47 (6%)

Query: 220 DKTALKLEIGDIIKVTKTNI-NGQWEGEL--NGKTGHFPFTHVEFIP 263
           +KT L    GD++ +      +G   GE       G FP ++ + + 
Sbjct: 21  NKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLS 67

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1 Length = 72

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 3/47 (6%)

Query: 495 DKTALKLEIGDIIKVTKTNI-NGQWEGEL--NGKTGHFPFTHVEFIP 538
           +KT L    GD++ +      +G   GE       G FP ++ + + 
Sbjct: 21  NKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLS 67

>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2 protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2 d.93.1.1 d.93.1.1 Length = 525

 Score = 59.9 bits (145), Expect = 1e-09
 Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 6/82 (7%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
          W+   +T  EA+ +LL+   +G+FL R S +  G+  L V+ N  V+H    KI NT   
Sbjct: 6  WFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHI---KIQNTGD- 61

Query: 73 TCYKI-GDKTFSDLPSLLAFYK 93
            Y + G + F+ L  L+ +Y 
Sbjct: 62 -YYDLYGGEKFATLAELVQYYM 82

>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2 protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2 d.93.1.1 d.93.1.1 Length = 525

 Score = 59.9 bits (145), Expect = 1e-09
 Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 6/82 (7%)

Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 347
           W+   +T  EA+ +LL+   +G+FL R S +  G+  L V+ N  V+H    KI NT   
Sbjct: 6   WFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHI---KIQNTGD- 61

Query: 348 TCYKI-GDKTFSDLPSLLAFYK 368
             Y + G + F+ L  L+ +Y 
Sbjct: 62  -YYDLYGGEKFATLAELVQYYM 82

>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2 protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2 d.93.1.1 d.93.1.1 Length = 525

 Score = 44.5 bits (105), Expect = 8e-05
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 6/91 (6%)

Query: 13  WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTE-- 70
           W+ G ++ +EA+ +L  +  +G+FLVR+S +  G++VL V+  +        K   T   
Sbjct: 112 WFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVM 171

Query: 71  ---QQTCYKIG-DKTFSDLPSLLAFYKVHYL 97
              Q+  Y +G  + F  L  L+  YK + +
Sbjct: 172 IRCQELKYDVGGGERFDSLTDLVEHYKKNPM 202

>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2 protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2 d.93.1.1 d.93.1.1 Length = 525

 Score = 44.5 bits (105), Expect = 8e-05
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 6/91 (6%)

Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTE-- 345
           W+ G ++ +EA+ +L  +  +G+FLVR+S +  G++VL V+  +        K   T   
Sbjct: 112 WFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVM 171

Query: 346 ---QQTCYKIG-DKTFSDLPSLLAFYKVHYL 372
              Q+  Y +G  + F  L  L+  YK + +
Sbjct: 172 IRCQELKYDVGGGERFDSLTDLVEHYKKNPM 202

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens} Length = 67

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 12/61 (19%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 111 EKVIAKYDFD-GNDPDDLPFKKNDIL-IVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKYS 167
           +KV   +    G++   L F + D++ +++ ++++ W   ++ +S   G  P  Y +   
Sbjct: 7   QKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKLLE 66

Query: 168 E 168
           E
Sbjct: 67  E 67

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens} Length = 67

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 12/61 (19%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 386 EKVIAKYDFD-GNDPDDLPFKKNDIL-IVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKYS 442
           +KV   +    G++   L F + D++ +++ ++++ W   ++ +S   G  P  Y +   
Sbjct: 7   QKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKLLE 66

Query: 443 E 443
           E
Sbjct: 67  E 67

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens} Length = 67

 Score = 46.2 bits (110), Expect = 5e-07
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 9/65 (13%)

Query: 208 ARVKQVRVPNAYDKTA------LKLEIGDIIKVTKTNINGQW-EGEL--NGKTGHFPFTH 258
           + +K+ +V   +  TA      L    GD+I +        W  GE   +   G FP ++
Sbjct: 2   SHMKKQKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSY 61

Query: 259 VEFIP 263
            + + 
Sbjct: 62  TKLLE 66

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens} Length = 67

 Score = 46.2 bits (110), Expect = 5e-07
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 9/65 (13%)

Query: 483 ARVKQVRVPNAYDKTA------LKLEIGDIIKVTKTNINGQW-EGEL--NGKTGHFPFTH 533
           + +K+ +V   +  TA      L    GD+I +        W  GE   +   G FP ++
Sbjct: 2   SHMKKQKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSY 61

Query: 534 VEFIP 538
            + + 
Sbjct: 62  TKLLE 66

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus} Length = 77

 Score = 53.7 bits (129), Expect = 2e-09
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 1/74 (1%)

Query: 121 GNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHL 180
              P ++  KK DIL +++   + WW  + ++   G +P  YV+K   G     +  L+ 
Sbjct: 2   AMGPREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKKLDSGTGKELVLALYD 60

Query: 181 DSSSHHVPQQQTTP 194
              S       + P
Sbjct: 61  YQESGDNAPSYSPP 74

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus} Length = 77

 Score = 53.7 bits (129), Expect = 2e-09
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 1/74 (1%)

Query: 396 GNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHL 455
              P ++  KK DIL +++   + WW  + ++   G +P  YV+K   G     +  L+ 
Sbjct: 2   AMGPREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKKLDSGTGKELVLALYD 60

Query: 456 DSSSHHVPQQQTTP 469
              S       + P
Sbjct: 61  YQESGDNAPSYSPP 74

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus} Length = 77

 Score = 47.1 bits (112), Expect = 3e-07
 Identities = 11/65 (16%), Positives = 26/65 (40%)

Query: 499 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETNGNGDIHNSTPK 558
           + ++ GDI+ +  +     W+ E+N + G  P  +V+ + +           D   S   
Sbjct: 8   VTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKELVLALYDYQESGDN 67

Query: 559 TETPT 563
             + +
Sbjct: 68  APSYS 72

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus} Length = 77

 Score = 45.6 bits (108), Expect = 1e-06
 Identities = 9/54 (16%), Positives = 24/54 (44%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETMPFHSSMKMT 277
           + ++ GDI+ +  +     W+ E+N + G  P  +V+ + +        ++   
Sbjct: 8   VTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKELVLALYDY 61

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 53.2 bits (128), Expect = 2e-09
 Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 111 EKVIAKYDFDGNDP-------DDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
            +++A YD+D  +         +L F   DI+ V  + +E  +    ++G+ G +P  ++
Sbjct: 8   RRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFL 67

Query: 164 QKYS 167
           ++ S
Sbjct: 68  EEVS 71

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 53.2 bits (128), Expect = 2e-09
 Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 386 EKVIAKYDFDGNDP-------DDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 438
            +++A YD+D  +         +L F   DI+ V  + +E  +    ++G+ G +P  ++
Sbjct: 8   RRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFL 67

Query: 439 QKYS 442
           ++ S
Sbjct: 68  EEVS 71

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 49.7 bits (119), Expect = 4e-08
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 212 QVRVPNAYDKTALKLEIGDIIKVT-KTNINGQWEGELNGKTGHFPFTHVEFIP 263
           +   PN   +  L    GDII V  + + +G + GELNG+ G  P   +E + 
Sbjct: 19  RESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFLEEVS 71

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 49.7 bits (119), Expect = 4e-08
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 487 QVRVPNAYDKTALKLEIGDIIKVT-KTNINGQWEGELNGKTGHFPFTHVEFIP 538
           +   PN   +  L    GDII V  + + +G + GELNG+ G  P   +E + 
Sbjct: 19  RESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFLEEVS 71

>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A* Length = 532

 Score = 58.7 bits (142), Expect = 3e-09
 Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 71
           W+   ++  +A+ +L     +G+FL R S    G++ L V+  ++V+H    +I N+  
Sbjct: 3  RWFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHI---RIQNSG- 58

Query: 72 QTCYKI-GDKTFSDLPSLLAFYK 93
             Y + G + F+ L  L+ +Y 
Sbjct: 59 -DFYDLYGGEKFATLTELVEYYT 80

>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A* Length = 532

 Score = 58.7 bits (142), Expect = 3e-09
 Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 287 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 346
            W+   ++  +A+ +L     +G+FL R S    G++ L V+  ++V+H    +I N+  
Sbjct: 3   RWFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHI---RIQNSG- 58

Query: 347 QTCYKI-GDKTFSDLPSLLAFYK 368
              Y + G + F+ L  L+ +Y 
Sbjct: 59  -DFYDLYGGEKFATLTELVEYYT 80

>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP, hydrolase, signaling protein; 3.10A {Homo sapiens} Length = 595

 Score = 58.4 bits (141), Expect = 4e-09
 Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 71
           W+   ++  +A+ +L     +G+FL R S    G++ L V+  ++V+H    +I N+  
Sbjct: 3  RWFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHI---RIQNSG- 58

Query: 72 QTCYKI-GDKTFSDLPSLLAFYK 93
             Y + G + F+ L  L+ +Y 
Sbjct: 59 -DFYDLYGGEKFATLTELVEYYT 80

>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP, hydrolase, signaling protein; 3.10A {Homo sapiens} Length = 595

 Score = 58.4 bits (141), Expect = 4e-09
 Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 287 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 346
            W+   ++  +A+ +L     +G+FL R S    G++ L V+  ++V+H    +I N+  
Sbjct: 3   RWFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHI---RIQNSG- 58

Query: 347 QTCYKI-GDKTFSDLPSLLAFYK 368
              Y + G + F+ L  L+ +Y 
Sbjct: 59  -DFYDLYGGEKFATLTELVEYYT 80

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A Length = 108

 Score = 53.5 bits (128), Expect = 4e-09
 Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 10/72 (13%)

Query: 107 TKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSK---DEEHWW-------TAQNISGEVG 156
           +  I   +A  D+   D   L   +  ++ V SK       +W          +++  +G
Sbjct: 19  SHPISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLG 78

Query: 157 SIPVPYVQKYSE 168
             P   V++   
Sbjct: 79  YFPSSIVREDQT 90

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A Length = 108

 Score = 53.5 bits (128), Expect = 4e-09
 Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 10/72 (13%)

Query: 382 TKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSK---DEEHWW-------TAQNISGEVG 431
           +  I   +A  D+   D   L   +  ++ V SK       +W          +++  +G
Sbjct: 19  SHPISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLG 78

Query: 432 SIPVPYVQKYSE 443
             P   V++   
Sbjct: 79  YFPSSIVREDQT 90

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens} Length = 486

 Score = 57.5 bits (137), Expect = 7e-09
 Identities = 28/182 (15%), Positives = 55/182 (30%), Gaps = 1/182 (0%)

Query: 260 EFIPTNETMPFHSSMKMTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTI 319
           E+             K           +         +  + L    +        S+  
Sbjct: 303 EWSADLNRTLSRREKKKATDGVTLTGINQTGDQSLPSKPSSTLNVPSNPAQSAQSQSSYN 362

Query: 320 LGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIK 379
                               K  ++ ++T     D +  +  +  +    +         
Sbjct: 363 PFEDEDDTGSTVSEKDDTKAKNVSSYEKTQSYPTDWSDDESNNPFSSTDANGDSNPFDDD 422

Query: 380 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSK-DEEHWWTAQNISGEVGSIPVPYV 438
             + T  +V A YD++G + D+L FK  D L  +   DE+ W   +  +G+VG  P  YV
Sbjct: 423 ATSGTEVRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYV 482

Query: 439 QK 440
           + 
Sbjct: 483 EA 484

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens} Length = 486

 Score = 55.9 bits (133), Expect = 2e-08
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSK-DEEHWWTAQNISGEVGSIPVPYVQK 165
           A YD++G + D+L FK  D L  +   DE+ W   +  +G+VG  P  YV+ 
Sbjct: 433 ALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYVEA 484

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} Length = 67

 Score = 50.4 bits (121), Expect = 1e-08
 Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 105 PATKTIEKVIAKYDFD-GNDPDDLPFKKNDILIV-VSKDEEHWWTAQNI-SGEVGSIPVP 161
           P      +V A +    G++   L FK+ D++ + V +  + W   ++  +   G  P  
Sbjct: 2   PLGSGRMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFS 61

Query: 162 YVQK 165
           Y + 
Sbjct: 62  YTRV 65

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} Length = 67

 Score = 50.4 bits (121), Expect = 1e-08
 Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 380 PATKTIEKVIAKYDFD-GNDPDDLPFKKNDILIV-VSKDEEHWWTAQNI-SGEVGSIPVP 436
           P      +V A +    G++   L FK+ D++ + V +  + W   ++  +   G  P  
Sbjct: 2   PLGSGRMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFS 61

Query: 437 YVQK 440
           Y + 
Sbjct: 62  YTRV 65

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} Length = 67

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 9/61 (14%)

Query: 211 KQVRVPNAYDKTA------LKLEIGDIIKVTKTNINGQW-EGEL--NGKTGHFPFTHVEF 261
            ++RV   +   A      L  + GD+I +        W  GE       G FPF++   
Sbjct: 6   GRMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRV 65

Query: 262 I 262
           +
Sbjct: 66  L 66

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} Length = 67

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 9/61 (14%)

Query: 486 KQVRVPNAYDKTA------LKLEIGDIIKVTKTNINGQW-EGEL--NGKTGHFPFTHVEF 536
            ++RV   +   A      L  + GD+I +        W  GE       G FPF++   
Sbjct: 6   GRMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRV 65

Query: 537 I 537
           +
Sbjct: 66  L 66

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Length = 466

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 1/94 (1%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
            +  ++    A +D    D  +L FK  D++ V+      WW  + ++   G  P  +V+
Sbjct: 25  ISDGSVVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGR-VADGEGWFPASFVR 83

Query: 165 KYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKT 198
                            +S       +    +  
Sbjct: 84  LRVNQDEPADDDAPLAGNSGAEDGGAEAQSSKDQ 117

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Length = 466

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 1/94 (1%)

Query: 380 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
            +  ++    A +D    D  +L FK  D++ V+      WW  + ++   G  P  +V+
Sbjct: 25  ISDGSVVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGR-VADGEGWFPASFVR 83

Query: 440 KYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKT 473
                            +S       +    +  
Sbjct: 84  LRVNQDEPADDDAPLAGNSGAEDGGAEAQSSKDQ 117

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Length = 466

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 26/152 (17%), Positives = 46/152 (30%), Gaps = 22/152 (14%)

Query: 218 AYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE-FIPTNETMPFHSSMKM 276
             D   L  + GD+I+V        W G +    G FP + V   +  +E     + +  
Sbjct: 41  TMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRVNQDEPADDDAPLAG 100

Query: 277 TGTFDPHDRNSWYFGMMTRQE-AQAILLSEKDNGAFLVRDSNTILGNYVL-CVKENNKVS 334
               +     +       R      IL +E+D     ++    I   YV  C K  +  S
Sbjct: 101 NSGAEDGGAEAQSSKDQMRTNVINEILSTERD----YIKHLRDICEGYVRQCRKRADMFS 156

Query: 335 HYIINKITNTEQQTCYKIGDKTFSDLPSLLAF 366
              +  I               F ++  +   
Sbjct: 157 EEQLRTI---------------FGNIEDIYRC 173

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Length = 466

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 12/71 (16%), Positives = 22/71 (30%)

Query: 493 AYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETNGNGDI 552
             D   L  + GD+I+V        W G +    G FP + V      +   + +     
Sbjct: 41  TMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRVNQDEPADDDAPLAG 100

Query: 553 HNSTPKTETPT 563
           ++         
Sbjct: 101 NSGAEDGGAEA 111

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 50.6 bits (121), Expect = 3e-08
 Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 5/76 (6%)

Query: 98  DTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH----WWTAQNI-S 152
            +S          E +   Y +   + D+L     D + +   ++      W    ++ +
Sbjct: 4   GSSGSRDIRFANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTT 63

Query: 153 GEVGSIPVPYVQKYSE 168
           G  G +P  Y+ K  E
Sbjct: 64  GCSGLLPENYITKADE 79

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 50.6 bits (121), Expect = 3e-08
 Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 5/76 (6%)

Query: 373 DTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH----WWTAQNI-S 427
            +S          E +   Y +   + D+L     D + +   ++      W    ++ +
Sbjct: 4   GSSGSRDIRFANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTT 63

Query: 428 GEVGSIPVPYVQKYSE 443
           G  G +P  Y+ K  E
Sbjct: 64  GCSGLLPENYITKADE 79

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 48.6 bits (116), Expect = 1e-07
 Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 9/78 (11%)

Query: 205 PAFARVKQVRVPNAYDKTA---LKLEIGDIIKVTKTNINGQ----WEG--ELNGKTGHFP 255
             FA  + ++V   Y       L+L  GD I ++             G     G +G  P
Sbjct: 11  IRFANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLP 70

Query: 256 FTHVEFIPTNETMPFHSS 273
             ++       T  FH S
Sbjct: 71  ENYITKADECSTWIFHGS 88

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 44.8 bits (106), Expect = 3e-06
 Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 9/80 (11%)

Query: 480 PAFARVKQVRVPNAYDKTA---LKLEIGDIIKVTKTNINGQ----WEG--ELNGKTGHFP 530
             FA  + ++V   Y       L+L  GD I ++             G     G +G  P
Sbjct: 11  IRFANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLP 70

Query: 531 FTHVEFIPTNETSVETNGNG 550
             ++       T +    +G
Sbjct: 71  ENYITKADECSTWIFHGSSG 90

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B Length = 115

 Score = 50.9 bits (121), Expect = 4e-08
 Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 14/72 (19%)

Query: 108 KTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD-----EEHWWT---------AQNISG 153
             + KV A++D+   D D+L  K  D+++V+        +E W            + +  
Sbjct: 42  GFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEK 101

Query: 154 EVGSIPVPYVQK 165
             G  P  + ++
Sbjct: 102 CRGVFPENFTER 113

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B Length = 115

 Score = 50.9 bits (121), Expect = 4e-08
 Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 14/72 (19%)

Query: 383 KTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD-----EEHWWT---------AQNISG 428
             + KV A++D+   D D+L  K  D+++V+        +E W            + +  
Sbjct: 42  GFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEK 101

Query: 429 EVGSIPVPYVQK 440
             G  P  + ++
Sbjct: 102 CRGVFPENFTER 113

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1 Length = 78

 Score = 48.8 bits (116), Expect = 9e-08
 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD-EEHWWTAQNI-SGEVGSIPVPY 162
           P  +  ++        G     L     DI+ +   + E +WW  +N  + EVG  P   
Sbjct: 13  PKMEVFQEYYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNR 72

Query: 163 VQKY 166
           V  Y
Sbjct: 73  VHPY 76

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1 Length = 78

 Score = 48.8 bits (116), Expect = 9e-08
 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 380 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD-EEHWWTAQNI-SGEVGSIPVPY 437
           P  +  ++        G     L     DI+ +   + E +WW  +N  + EVG  P   
Sbjct: 13  PKMEVFQEYYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNR 72

Query: 438 VQKY 441
           V  Y
Sbjct: 73  VHPY 76

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1 Length = 78

 Score = 43.1 bits (101), Expect = 8e-06
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 203 KLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQW-EGEL--NGKTGHFPFTHV 259
           K+  F     +  P       L+L  GDI+++TK      W EG      + G FP   V
Sbjct: 14  KMEVFQEYYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRV 73

Query: 260 E 260
            
Sbjct: 74  H 74

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1 Length = 78

 Score = 43.1 bits (101), Expect = 8e-06
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 478 KLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQW-EGEL--NGKTGHFPFTHV 534
           K+  F     +  P       L+L  GDI+++TK      W EG      + G FP   V
Sbjct: 14  KMEVFQEYYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRV 73

Query: 535 E 535
            
Sbjct: 74  H 74

>2cr4_A 3BP-2, SH3 domain-binding protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 49.4 bits (117), Expect = 2e-07
 Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 10/96 (10%)

Query: 11  NSWYFGMMTRQEAQAILLSE-----KDNGAFLVRDSNTILGNYVLCVKE-NNKVSHYIIN 64
           NS +       E + +  +        +G + +R+S+T  G  ++   E +NKV +Y I 
Sbjct: 17  NSVFVNTTESCEVERLFKATSPRGEPQDGLYCIRNSSTKSGKVLVVWDETSNKVRNYRI- 75

Query: 65  KITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTS 100
                +    Y  G+  F  + S++  Y  H L + 
Sbjct: 76  ---FEKDSKFYLEGEVLFVSVGSMVEHYHTHVLPSH 108

>2cr4_A 3BP-2, SH3 domain-binding protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 49.4 bits (117), Expect = 2e-07
 Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 10/96 (10%)

Query: 286 NSWYFGMMTRQEAQAILLSE-----KDNGAFLVRDSNTILGNYVLCVKE-NNKVSHYIIN 339
           NS +       E + +  +        +G + +R+S+T  G  ++   E +NKV +Y I 
Sbjct: 17  NSVFVNTTESCEVERLFKATSPRGEPQDGLYCIRNSSTKSGKVLVVWDETSNKVRNYRI- 75

Query: 340 KITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTS 375
                +    Y  G+  F  + S++  Y  H L + 
Sbjct: 76  ---FEKDSKFYLEGEVLFVSVGSMVEHYHTHVLPSH 108

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A Length = 283

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMS 171
           +VI  YD+   + D+L F K  I+ V++K++  WW  + +SG+VG  P  YV+  ++   
Sbjct: 4   QVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGE-VSGQVGLFPSNYVKLTTDMDP 62

Query: 172 ILS 174
              
Sbjct: 63  SQQ 65

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A Length = 283

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMS 446
           +VI  YD+   + D+L F K  I+ V++K++  WW  + +SG+VG  P  YV+  ++   
Sbjct: 4   QVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGE-VSGQVGLFPSNYVKLTTDMDP 62

Query: 447 ILS 449
              
Sbjct: 63  SQQ 65

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A Length = 283

 Score = 46.7 bits (111), Expect = 9e-06
 Identities = 25/145 (17%), Positives = 48/145 (33%), Gaps = 29/145 (20%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETMPFHSSMKMTG-TFDP 282
           L    G II V        W+GE++G+ G FP  +V+     +      S         P
Sbjct: 19  LAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTTDMDPSQQWCSDLHLLDMLTP 78

Query: 283 HDRNSWYFGMMTRQEA-QAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI 341
            +R         RQ     ++++E++     V D   +   +   + E+  ++   +  I
Sbjct: 79  TERK--------RQGYIHELIVTEEN----YVNDLQLVTEIFQKPLTESELLTEKEVAMI 126

Query: 342 TNTEQQTCYKIGDKTFSDLPSLLAF 366
                          F +   L+  
Sbjct: 127 ---------------FVNWKELIMC 136

>2el8_A Signal-transducing adaptor protein 2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics; NMR {Homo sapiens} Length = 118

 Score = 47.8 bits (113), Expect = 4e-07
 Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 12/90 (13%)

Query: 13  WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKEN----NKVSHYIINKITN 68
             F  ++R EAQ +L    + G  L+R S        +  ++     + V HY + +   
Sbjct: 23  SCFLKVSRLEAQLLLERYPECGNLLLRPSGDGADGVSVTTRQMHNGTHVVRHYKVKREGP 82

Query: 69  TEQQTCYKIGDK---TFSDLPSLLAFYKVH 95
                 Y I  +   + + L +++ ++  H
Sbjct: 83  K-----YVIDVEQPFSCTSLDAVVNYFVSH 107

>2el8_A Signal-transducing adaptor protein 2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics; NMR {Homo sapiens} Length = 118

 Score = 47.8 bits (113), Expect = 4e-07
 Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 12/90 (13%)

Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKEN----NKVSHYIINKITN 343
             F  ++R EAQ +L    + G  L+R S        +  ++     + V HY + +   
Sbjct: 23  SCFLKVSRLEAQLLLERYPECGNLLLRPSGDGADGVSVTTRQMHNGTHVVRHYKVKREGP 82

Query: 344 TEQQTCYKIGDK---TFSDLPSLLAFYKVH 370
                 Y I  +   + + L +++ ++  H
Sbjct: 83  K-----YVIDVEQPFSCTSLDAVVNYFVSH 107

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} Length = 184

 Score = 49.3 bits (117), Expect = 4e-07
 Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 3/60 (5%)

Query: 107 TKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS--GEVGSIPVPYVQ 164
                  +A Y+F G+    L  +  D++ +       W+    I      G  P  ++ 
Sbjct: 14  ADKERHGVAIYNFQGSGAPQLSLQIGDVVRIQETC-GDWYRGYLIKHKMLQGIFPKSFIH 72

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} Length = 184

 Score = 49.3 bits (117), Expect = 4e-07
 Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 3/60 (5%)

Query: 382 TKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS--GEVGSIPVPYVQ 439
                  +A Y+F G+    L  +  D++ +       W+    I      G  P  ++ 
Sbjct: 14  ADKERHGVAIYNFQGSGAPQLSLQIGDVVRIQETC-GDWYRGYLIKHKMLQGIFPKSFIH 72

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} PDB: 2kt1_A Length = 90

 Score = 46.9 bits (111), Expect = 5e-07
 Identities = 18/81 (22%), Positives = 25/81 (30%), Gaps = 16/81 (19%)

Query: 101 PLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSK---------------DEEHW 145
           PL   A     +  A Y F    P+DL     D+L+V                      W
Sbjct: 2   PLGSMAGPEGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGW 61

Query: 146 WTAQN-ISGEVGSIPVPYVQK 165
               N  + + G  P  YV+ 
Sbjct: 62  MPGLNERTRQRGDFPGTYVEF 82

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} PDB: 2kt1_A Length = 90

 Score = 46.9 bits (111), Expect = 5e-07
 Identities = 18/81 (22%), Positives = 25/81 (30%), Gaps = 16/81 (19%)

Query: 376 PLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSK---------------DEEHW 420
           PL   A     +  A Y F    P+DL     D+L+V                      W
Sbjct: 2   PLGSMAGPEGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGW 61

Query: 421 WTAQN-ISGEVGSIPVPYVQK 440
               N  + + G  P  YV+ 
Sbjct: 62  MPGLNERTRQRGDFPGTYVEF 82

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 9e-07
 Identities = 81/515 (15%), Positives = 140/515 (27%), Gaps = 161/515 (31%)

Query: 93  KVHYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLP---FKKNDI-LIVVSKDEEH---- 144
           +  Y D   + + A           +FD  D  D+P     K +I  I++SKD       
Sbjct: 15  QYQYKDILSVFEDAFVD--------NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 145 --W-----------------------WTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLH 179
             W                       +    I  E    P    + Y E         L+
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ-RQPSMMTRMYIE-----QRDRLY 120

Query: 180 LDSSS---HHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAY---------DKTALKLE 227
            D+     ++V + Q     +  L           ++R P             KT + L+
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQAL----------LELR-PAKNVLIDGVLGSGKTWVALD 169

Query: 228 IGDIIKVTKTNING-QWEGELNGKTGHFPFTHVE--------FIPTNETMPFHSSMKMTG 278
           +    KV         W   LN K  + P T +E          P   +   HSS     
Sbjct: 170 VCLSYKVQCKMDFKIFW---LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 279 TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTI----LGNYVLCVKENNKVS 334
                            +    +L     N    V+++       L   +L      +V+
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVL----LN----VQNAKAWNAFNLSCKILLTTRFKQVT 278

Query: 335 HYIINKITN-----------TEQQT---CYKIGDKTFSDLPSLLAFYKVHYLDTSPLI-- 378
            ++    T            T  +      K  D    DLP  +       L T+P    
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV-------LTTNPRRLS 331

Query: 379 --------KPAT---------KTIEKVIAKYDFDGNDPDDLPFKKN-DILIVVSKDEEHW 420
                     AT           +  +I +   +  +P +  ++K  D L V        
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTII-ESSLNVLEPAE--YRKMFDRLSVFPPSA--- 385

Query: 421 WTAQNISGEVGSIPVPYVQKYSEGMSIL------SLRNLHLDSSSHHVPQQQ----TTPV 470
               +I   + S+ + +    S+ M ++      SL       S+  +P           
Sbjct: 386 ----HIPTILLSL-IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440

Query: 471 RKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGD 505
            +  L   +     V    +P  +D   L     D
Sbjct: 441 NEYALHRSI-----VDHYNIPKTFDSDDLIPPYLD 470

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A Length = 70

 Score = 45.3 bits (107), Expect = 1e-06
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 6/61 (9%)

Query: 112 KVIAKYDFD----GNDPDDLPFKKNDILIVVSKDEEH-WWTAQNI-SGEVGSIPVPYVQK 165
           +V  +Y       G     L     DI+ +   + EH WW  +N  + EVG  P   V  
Sbjct: 8   EVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHP 67

Query: 166 Y 166
           Y
Sbjct: 68  Y 68

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A Length = 70

 Score = 45.3 bits (107), Expect = 1e-06
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 6/61 (9%)

Query: 387 KVIAKYDFD----GNDPDDLPFKKNDILIVVSKDEEH-WWTAQNI-SGEVGSIPVPYVQK 440
           +V  +Y       G     L     DI+ +   + EH WW  +N  + EVG  P   V  
Sbjct: 8   EVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHP 67

Query: 441 Y 441
           Y
Sbjct: 68  Y 68

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A Length = 70

 Score = 41.9 bits (98), Expect = 2e-05
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 203 KLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI-NGQWEGEL--NGKTGHFPFTHV 259
           K+  F     +  P       L+L  GDI+++TK    +  WEG      + G FP   V
Sbjct: 6   KMEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRV 65

Query: 260 E 260
            
Sbjct: 66  H 66

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A Length = 70

 Score = 41.9 bits (98), Expect = 2e-05
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 478 KLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI-NGQWEGEL--NGKTGHFPFTHV 534
           K+  F     +  P       L+L  GDI+++TK    +  WEG      + G FP   V
Sbjct: 6   KMEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRV 65

Query: 535 E 535
            
Sbjct: 66  H 66

>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo sapiens} PDB: 2gto_A Length = 96

 Score = 44.7 bits (105), Expect = 4e-06
 Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 3/64 (4%)

Query: 103 IKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPV 160
           +    + I    A  D  G   ++L FK+ + + ++      E  W  +   G  G I  
Sbjct: 21  LTGPIQVIHLAKACCDVKG-GKNELSFKQGEQIEIIRITDNPEGKWLGRTARGSYGYIKT 79

Query: 161 PYVQ 164
             V+
Sbjct: 80  TAVE 83

>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo sapiens} PDB: 2gto_A Length = 96

 Score = 44.7 bits (105), Expect = 4e-06
 Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 3/64 (4%)

Query: 378 IKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPV 435
           +    + I    A  D  G   ++L FK+ + + ++      E  W  +   G  G I  
Sbjct: 21  LTGPIQVIHLAKACCDVKG-GKNELSFKQGEQIEIIRITDNPEGKWLGRTARGSYGYIKT 79

Query: 436 PYVQ 439
             V+
Sbjct: 80  TAVE 83

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A Length = 295

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 10/82 (12%)

Query: 115 AKYDFDGNDPDDLP-----FKKNDILIVVSKDEEHWWTAQNISGE-----VGSIPVPYVQ 164
           A +D+D             F+  D+L V+   +E WW A+ +  +     +G IP     
Sbjct: 6   ALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRV 65

Query: 165 KYSEGMSILSLRNLHLDSSSHH 186
           +  E   + +        S   
Sbjct: 66  ERREWSRLKAKDWGSSSGSQGR 87

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A Length = 295

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 10/82 (12%)

Query: 390 AKYDFDGNDPDDLP-----FKKNDILIVVSKDEEHWWTAQNISGE-----VGSIPVPYVQ 439
           A +D+D             F+  D+L V+   +E WW A+ +  +     +G IP     
Sbjct: 6   ALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRV 65

Query: 440 KYSEGMSILSLRNLHLDSSSHH 461
           +  E   + +        S   
Sbjct: 66  ERREWSRLKAKDWGSSSGSQGR 87

>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 92

 Score = 44.2 bits (104), Expect = 5e-06
 Identities = 10/59 (16%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDE----EHWWTAQNISGEVGSIPVPYVQKYSE 168
            A+ +F+     D+   + D++ V+ K +    ++ W   N     G +   +++ Y+ 
Sbjct: 21  QAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDN-GVTKGFVYSSFLKPYNP 78

>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 92

 Score = 44.2 bits (104), Expect = 5e-06
 Identities = 10/59 (16%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 389 IAKYDFDGNDPDDLPFKKNDILIVVSKDE----EHWWTAQNISGEVGSIPVPYVQKYSE 443
            A+ +F+     D+   + D++ V+ K +    ++ W   N     G +   +++ Y+ 
Sbjct: 21  QAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDN-GVTKGFVYSSFLKPYNP 78

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens} Length = 526

 Score = 47.2 bits (111), Expect = 1e-05
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 224 LKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIPTNETMPFHSSMKMTGTFD 281
           + +E GDII V   + +G  +G     G+TG +P   V         P +   +  G   
Sbjct: 459 IPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREKIETVKYPTYPEAEKAGGGH 518

Query: 282 PH 283
            H
Sbjct: 519 HH 520

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A Length = 337

 Score = 46.7 bits (110), Expect = 1e-05
 Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 9/88 (10%)

Query: 115 AKYDFDGNDPDDLP-------FKKNDILIVVSKDEEHWWTAQNI--SGEVGSIPVPYVQK 165
               +     DD+P       F+  D L V  K    WW  + +    E+G IP P   +
Sbjct: 43  TNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVKLE 102

Query: 166 YSEGMSILSLRNLHLDSSSHHVPQQQTT 193
                     +   L S    +P  + T
Sbjct: 103 NMRLQHEQRAKEFKLHSKEKRMPFFKKT 130

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A Length = 337

 Score = 46.7 bits (110), Expect = 1e-05
 Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 9/88 (10%)

Query: 390 AKYDFDGNDPDDLP-------FKKNDILIVVSKDEEHWWTAQNI--SGEVGSIPVPYVQK 440
               +     DD+P       F+  D L V  K    WW  + +    E+G IP P   +
Sbjct: 43  TNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVKLE 102

Query: 441 YSEGMSILSLRNLHLDSSSHHVPQQQTT 468
                     +   L S    +P  + T
Sbjct: 103 NMRLQHEQRAKEFKLHSKEKRMPFFKKT 130

>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal transduction, transducer, transcription factor; HET: PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 1uus_A* Length = 473

 Score = 46.5 bits (109), Expect = 2e-05
 Identities = 23/123 (18%), Positives = 41/123 (33%), Gaps = 12/123 (9%)

Query: 269 PFHSSMKMTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLC-- 326
               +++         +    +G M RQE     L  +D G F++R S    G + +   
Sbjct: 334 KSMQTLRYQRHISTLWQEGIIYGYMGRQEVND-ALQNQDPGTFIIRFSERNPGQFGIAYI 392

Query: 327 -VKENNKVSHYIINKITNTEQQTCYKIGDKTFSD-LPSLLAFYKVHYLDTSPLIKPATKT 384
            V+   ++ HY++        +       KTF D L     F  +          P    
Sbjct: 393 GVEMPARIKHYLVQPNDTAAAK-------KTFPDFLSEHSQFVNLLQWTKDTNGAPRFLK 445

Query: 385 IEK 387
           + K
Sbjct: 446 LHK 448

>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal transduction, transducer, transcription factor; HET: PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 1uus_A* Length = 473

 Score = 43.0 bits (100), Expect = 2e-04
 Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 12/110 (10%)

Query: 7   PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLC---VKENNKVSHYII 63
              +    +G M RQE     L  +D G F++R S    G + +    V+   ++ HY++
Sbjct: 347 TLWQEGIIYGYMGRQEVND-ALQNQDPGTFIIRFSERNPGQFGIAYIGVEMPARIKHYLV 405

Query: 64  NKITNTEQQTCYKIGDKTFSD-LPSLLAFYKVHYLDTSPLIKPATKTIEK 112
                   +       KTF D L     F  +          P    + K
Sbjct: 406 QPNDTAAAK-------KTFPDFLSEHSQFVNLLQWTKDTNGAPRFLKLHK 448

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A* Length = 292

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 18/108 (16%)

Query: 115 AKYDFDGNDPDDLP-----FKKNDILIVVSKDEEHWWTAQNI-----SGEVGSIPVPYVQ 164
           A +D+D N  D LP     FK  DIL V +  ++ WW A+ +       ++G +P     
Sbjct: 10  ALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDEWWQARRVLGDNEDEQIGIVPSKRRW 69

Query: 165 KYSEGMSILSLRNLHLDSSSHHVPQQQTTPVR--------KTHLEVKL 204
           +        S+++     S   V +      R        K  +   L
Sbjct: 70  ERKMRARDRSVKSEENVLSYEAVQRLSINYTRPVIILGPLKDRINDDL 117

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A* Length = 292

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 18/108 (16%)

Query: 390 AKYDFDGNDPDDLP-----FKKNDILIVVSKDEEHWWTAQNI-----SGEVGSIPVPYVQ 439
           A +D+D N  D LP     FK  DIL V +  ++ WW A+ +       ++G +P     
Sbjct: 10  ALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDEWWQARRVLGDNEDEQIGIVPSKRRW 69

Query: 440 KYSEGMSILSLRNLHLDSSSHHVPQQQTTPVR--------KTHLEVKL 479
           +        S+++     S   V +      R        K  +   L
Sbjct: 70  ERKMRARDRSVKSEENVLSYEAVQRLSINYTRPVIILGPLKDRINDDL 117

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A Length = 463

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 14 YFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 61
          + GM++R+ A  +L      G++L+R+S    G Y L ++  ++  ++
Sbjct: 54 FHGMISREAADQLL--IVAEGSYLIRESQRQPGTYTLALRFGSQTRNF 99

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A Length = 463

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 289 YFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 336
           + GM++R+ A  +L      G++L+R+S    G Y L ++  ++  ++
Sbjct: 54  FHGMISREAADQLL--IVAEGSYLIRESQRQPGTYTLALRFGSQTRNF 99

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens} Length = 308

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 13/99 (13%), Positives = 25/99 (25%), Gaps = 14/99 (14%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKD---------EEHWWTAQNI-----SGEVGSIPV 160
             ++ + + P  L F + D+  V+                W A  +       E G IP 
Sbjct: 9   THFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGIIPN 68

Query: 161 PYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTH 199
               +    +            SS     +      +  
Sbjct: 69  QSRAEQLASLEAAQRAVGVGPGSSAGSNARAEFWRLRGL 107

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens} Length = 308

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 13/99 (13%), Positives = 25/99 (25%), Gaps = 14/99 (14%)

Query: 390 AKYDFDGNDPDDLPFKKNDILIVVSKD---------EEHWWTAQNI-----SGEVGSIPV 435
             ++ + + P  L F + D+  V+                W A  +       E G IP 
Sbjct: 9   THFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGIIPN 68

Query: 436 PYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTH 474
               +    +            SS     +      +  
Sbjct: 69  QSRAEQLASLEAAQRAVGVGPGSSAGSNARAEFWRLRGL 107

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 41.2 bits (95), Expect = 4e-04
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 14/72 (19%)

Query: 108 KTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--------------EEHWWTAQNISG 153
             + KV A++D+   D D+L  K  D+++V+                 E  W   + +  
Sbjct: 140 GFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEK 199

Query: 154 EVGSIPVPYVQK 165
             G  P  + ++
Sbjct: 200 CRGVFPENFTER 211

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 41.2 bits (95), Expect = 4e-04
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 14/72 (19%)

Query: 383 KTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--------------EEHWWTAQNISG 428
             + KV A++D+   D D+L  K  D+++V+                 E  W   + +  
Sbjct: 140 GFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEK 199

Query: 429 EVGSIPVPYVQK 440
             G  P  + ++
Sbjct: 200 CRGVFPENFTER 211

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A Length = 391

 Score = 41.0 bits (95), Expect = 7e-04
 Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 8/62 (12%)

Query: 117 YDFDGNDPDDLPFKKNDILIVVS---KDEEHWWTA-----QNISGEVGSIPVPYVQKYSE 168
           ++++   P  L F K ++  VV      +   W A      +   E G IP     +   
Sbjct: 113 FEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQLA 172

Query: 169 GM 170
            +
Sbjct: 173 SV 174

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A Length = 391

 Score = 41.0 bits (95), Expect = 7e-04
 Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 8/62 (12%)

Query: 392 YDFDGNDPDDLPFKKNDILIVVS---KDEEHWWTA-----QNISGEVGSIPVPYVQKYSE 443
           ++++   P  L F K ++  VV      +   W A      +   E G IP     +   
Sbjct: 113 FEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQLA 172

Query: 444 GM 445
            +
Sbjct: 173 SV 174

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	563
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	100.0
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	100.0
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	100.0
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	100.0
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	100.0
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	100.0
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	100.0
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	100.0
4fbn_A	246	1-phosphatidylinositol 4,5-bisphosphate phosphodi	100.0
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	100.0
2oq1_A	254	Tyrosine-protein kinase ZAP-70; tandem SH2 domains	100.0
1a81_A	254	SYK kinase; complex (transferase-peptide), SYK, ki	100.0
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.97
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.97
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	99.97
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	99.97
3ps5_A	595	Tyrosine-protein phosphatase non-receptor type 6;	99.97
2shp_A	525	SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin	99.96
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	99.96
2b3o_A	532	Tyrosine-protein phosphatase, non-receptor type 6;	99.96
3hhm_B	373	NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidil	99.95
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	99.94
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	99.92
2eo3_A	111	CRK-like protein; phosphorylation, repeat, SH2 dom	99.91
1d4t_A	104	T cell signal transduction molecule SAP; SH2 domai	99.9
2gsb_A	119	RAS GTPase-activating protein 1; GAP, RAS P21 prot	99.89
3us4_A	98	Megakaryocyte-associated tyrosine-protein kinase;	99.89
2ysx_A	119	Signaling inositol polyphosphate phosphatase SHIP	99.89
1i3z_A	103	EWS/FLI1 activated transcript 2; SH2 domain phosph	99.89
1nrv_A	105	Growth factor receptor-bound protein 10; dimer, si	99.89
1ka6_A	128	SH2 domain protein 1A; SH2 domain, protein-peptide	99.89
1lkk_A	105	Human P56 tyrosine kinase; complex (tyrosine kinas	99.89
2ge9_A	125	Tyrosine-protein kinase BTK; SH2 domain, structure	99.88
1rja_A	100	Tyrosine-protein kinase 6; human protein tyrosine	99.88
3ov1_A	117	Growth factor receptor-bound protein 2; GRB2 SH2 d	99.88
1ju5_A	109	CRK; CRK, SH2, SH3, adaptor protein, phosphopeptid	99.88
1jyr_A	96	Growth factor receptor-bound protein 2; receptor b	99.88
2eob_A	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.88
2dly_A	121	FYN-related kinase; BRK family kinase, structural	99.88
3pqz_A	117	Growth factor receptor-bound protein 7; SH2, binds	99.88
1blj_A	114	P55 BLK protein tyrosine kinase; signal transducti	99.88
3eaz_A	106	Tyrosine-protein kinase CSK; SH2, disulfide, oxidi	99.88
2cia_A	102	Cytoplasmic protein NCK2; SH2-domain, SH3 domain,	99.88
2cs0_A	119	Hematopoietic SH2 domain containing; ALX, FLJ14886	99.87
2ekx_A	110	Cytoplasmic tyrosine-protein kinase BMX; SH2 domai	99.87
3k2m_A	112	Proto-oncogene tyrosine-protein kinase ABL1; engin	99.87
1aot_F	106	FYN protein-tyrosine kinase; SH2 domain, signal tr	99.87
2kk6_A	116	Proto-oncogene tyrosine-protein kinase FER; method	99.87
1mil_A	104	SHC adaptor protein; SH2 domain, phosphorylation,	99.87
3tkz_A	109	Tyrosine-protein phosphatase non-receptor type 11;	99.87
3maz_A	125	Signal-transducing adaptor protein 1; modular doma	99.87
1r1p_A	100	GRB2-related adaptor protein 2; SH2, GADS, phospho	99.87
3s9k_A	118	Tyrosine-protein kinase ITK/TSK; proline isomeriza	99.87
2aug_A	126	Growth factor receptor-bound protein 14; phosphory	99.87
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	99.87
2ecd_A	119	Tyrosine-protein kinase ABL2; SH2 domain, phosphot	99.87
2dlz_A	118	Protein VAV-2; RHO family guanine nucleotide excha	99.87
2lnw_A	122	VAV-2, guanine nucleotide exchange factor VAV2; si	99.87
1h9o_A	112	Phosphatidylinositol 3-kinase; transferase/recepto	99.87
2hdv_A	111	SH2-B PH domain containing signaling mediator 1 ga	99.86
2dm0_A	125	Tyrosine-protein kinase TXK; TEC family kinase, st	99.86
2iug_A	120	Phosphatidylinositol 3-kinase regulatory alpha sub	99.86
2eo6_A	141	B-cell linker protein; SH2, cytoplasmic adapter pr	99.86
2dx0_A	138	Phospholipase C, gamma 2; phosphoric diester hydro	99.85
1wqu_A	114	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.85
2crh_A	138	VAV proto-oncogene; oncoprotein, structural genomi	99.84
2kno_A	131	Tensin-like C1 domain-containing phosphatase; SH2	99.84
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.84
2el8_A	118	Signal-transducing adaptor protein 2; SH2 domain,	99.84
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.84
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.83
2c9w_A	169	Suppressor of cytokine signaling 2; growth regulat	99.83
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.82
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	99.82
2vif_A	141	Suppressor of cytokine signalling 6; growth regula	99.82
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.81
2eo3_A	111	CRK-like protein; phosphorylation, repeat, SH2 dom	99.81
2bbu_A	164	Suppressor of cytokine signaling 3; SH2 domain, ex	99.8
2izv_A	187	Suppressor of cytokine signaling 4; signal transdu	99.8
4fbn_A	246	1-phosphatidylinositol 4,5-bisphosphate phosphodi	99.8
2hmh_A	152	Suppressor of cytokine signaling 3; SOCS3, GP130,	99.8
2oq1_A	254	Tyrosine-protein kinase ZAP-70; tandem SH2 domains	99.79
1a81_A	254	SYK kinase; complex (transferase-peptide), SYK, ki	99.79
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	99.78
2y3a_B	302	Phosphatidylinositol 3-kinase regulatory subunit;	99.76
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.7
2dly_A	121	FYN-related kinase; BRK family kinase, structural	99.69
2y3a_B	302	Phosphatidylinositol 3-kinase regulatory subunit;	99.69
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	99.69
1d4t_A	104	T cell signal transduction molecule SAP; SH2 domai	99.68
2gsb_A	119	RAS GTPase-activating protein 1; GAP, RAS P21 prot	99.68
1ju5_A	109	CRK; CRK, SH2, SH3, adaptor protein, phosphopeptid	99.68
3us4_A	98	Megakaryocyte-associated tyrosine-protein kinase;	99.67
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.66
1lkk_A	105	Human P56 tyrosine kinase; complex (tyrosine kinas	99.66
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	99.66
1i3z_A	103	EWS/FLI1 activated transcript 2; SH2 domain phosph	99.66
1jyr_A	96	Growth factor receptor-bound protein 2; receptor b	99.66
1rja_A	100	Tyrosine-protein kinase 6; human protein tyrosine	99.66
1nrv_A	105	Growth factor receptor-bound protein 10; dimer, si	99.66
2ysx_A	119	Signaling inositol polyphosphate phosphatase SHIP	99.65
2lx7_A	60	GAS-7, growth arrest-specific protein 7; structura	99.65
3maz_A	125	Signal-transducing adaptor protein 1; modular doma	99.65
3ov1_A	117	Growth factor receptor-bound protein 2; GRB2 SH2 d	99.65
2cia_A	102	Cytoplasmic protein NCK2; SH2-domain, SH3 domain,	99.65
2crh_A	138	VAV proto-oncogene; oncoprotein, structural genomi	99.64
2cr4_A	126	3BP-2, SH3 domain-binding protein 2; structural ge	99.64
3pqz_A	117	Growth factor receptor-bound protein 7; SH2, binds	99.64
2xp1_A	178	SPT6; transcription, IWS1, histone chaperone, mRNA	99.64
2eob_A	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.64
3eaz_A	106	Tyrosine-protein kinase CSK; SH2, disulfide, oxidi	99.64
2cs0_A	119	Hematopoietic SH2 domain containing; ALX, FLJ14886	99.63
1ka6_A	128	SH2 domain protein 1A; SH2 domain, protein-peptide	99.63
1wqu_A	114	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.63
1blj_A	114	P55 BLK protein tyrosine kinase; signal transducti	99.63
2kk6_A	116	Proto-oncogene tyrosine-protein kinase FER; method	99.63
2ekx_A	110	Cytoplasmic tyrosine-protein kinase BMX; SH2 domai	99.62
3s9k_A	118	Tyrosine-protein kinase ITK/TSK; proline isomeriza	99.62
2dlz_A	118	Protein VAV-2; RHO family guanine nucleotide excha	99.62
3tkz_A	109	Tyrosine-protein phosphatase non-receptor type 11;	99.62
1r1p_A	100	GRB2-related adaptor protein 2; SH2, GADS, phospho	99.61
2ge9_A	125	Tyrosine-protein kinase BTK; SH2 domain, structure	99.61
1aot_F	106	FYN protein-tyrosine kinase; SH2 domain, signal tr	99.61
1h9o_A	112	Phosphatidylinositol 3-kinase; transferase/recepto	99.61
2aug_A	126	Growth factor receptor-bound protein 14; phosphory	99.61
3k2m_A	112	Proto-oncogene tyrosine-protein kinase ABL1; engin	99.61
2ecd_A	119	Tyrosine-protein kinase ABL2; SH2 domain, phosphot	99.61
1mil_A	104	SHC adaptor protein; SH2 domain, phosphorylation,	99.61
2lnw_A	122	VAV-2, guanine nucleotide exchange factor VAV2; si	99.6
2iug_A	120	Phosphatidylinositol 3-kinase regulatory alpha sub	99.6
2hdv_A	111	SH2-B PH domain containing signaling mediator 1 ga	99.6
2eo6_A	141	B-cell linker protein; SH2, cytoplasmic adapter pr	99.6
2dx0_A	138	Phospholipase C, gamma 2; phosphoric diester hydro	99.59
2dm0_A	125	Tyrosine-protein kinase TXK; TEC family kinase, st	99.59
2lj0_A	65	Sorbin and SH3 domain-containing protein 1; R85FL,	99.59
3ps5_A	595	Tyrosine-protein phosphatase non-receptor type 6;	99.59
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	99.57
2lj0_A	65	Sorbin and SH3 domain-containing protein 1; R85FL,	99.57
2lx7_A	60	GAS-7, growth arrest-specific protein 7; structura	99.57
2kno_A	131	Tensin-like C1 domain-containing phosphatase; SH2	99.56
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.56
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	99.56
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	99.56
2el8_A	118	Signal-transducing adaptor protein 2; SH2 domain,	99.56
2shp_A	525	SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin	99.55
2bbu_A	164	Suppressor of cytokine signaling 3; SH2 domain, ex	99.54
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	99.52
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	99.52
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	99.51
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	99.51
2c9w_A	169	Suppressor of cytokine signaling 2; growth regulat	99.51
2b3o_A	532	Tyrosine-protein phosphatase, non-receptor type 6;	99.51
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.51
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens}	99.51
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	99.5
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	99.5
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	99.5
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	99.5
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.5
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	99.5
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	99.5
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	99.49
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	99.49
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	99.49
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	99.49
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	99.49
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.49
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	99.49
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	99.49
2vif_A	141	Suppressor of cytokine signalling 6; growth regula	99.49
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	99.49
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.49
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	99.49
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	99.49
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	99.49
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	99.48
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	99.48
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	99.48
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	99.48
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	99.48
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	99.48
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	99.48
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	99.48
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	99.48
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	99.48
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens}	99.48
2hmh_A	152	Suppressor of cytokine signaling 3; SOCS3, GP130,	99.47
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	99.47
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	99.47
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	99.47
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	99.47
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	99.47
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	99.47
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	99.47
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	99.47
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	99.47
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	99.47
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	99.47
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	99.47
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	99.47
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	99.47
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	99.47
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	99.47
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	99.47
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	99.47
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	99.47
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	99.47
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	99.47
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	99.46
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	99.46
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.46
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	99.46
3hhm_B	373	NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidil	99.46
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	99.46
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	99.46
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	99.46
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	99.46
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	99.46
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	99.46
2cr4_A	126	3BP-2, SH3 domain-binding protein 2; structural ge	99.46
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	99.46
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	99.46
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	99.46
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	99.46
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	99.45
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	99.45
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	99.45
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	99.45
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	99.45
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	99.45
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	99.45
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	99.45
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	99.45
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	99.45
4glm_A	72	Dynamin-binding protein; SH3 domain, DNMBP, struct	99.45
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	99.45
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	99.45
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	99.45
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.45
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	99.45
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	99.45
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	99.45
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	99.45
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	99.44
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	99.44
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.44
1i07_A	60	Epidermal growth factor receptor kinase substrate	99.44
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	99.44
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.44
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	99.44
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	99.44
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	99.44
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	99.44
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	99.44
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	99.44
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	99.44
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	99.44
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	99.44
2izv_A	187	Suppressor of cytokine signaling 4; signal transdu	99.44
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	99.44
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	99.44
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	99.44
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	99.44
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	99.44
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	99.44
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	99.44
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	99.44
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	99.43
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	99.43
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	99.43
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	99.43
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	99.43
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	99.43
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	99.43
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.43
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	99.43
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	99.43
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	99.43
3u23_A	65	CD2-associated protein; structural genomics, struc	99.43
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	99.43
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.43
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	99.43
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	99.43
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	99.43
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	99.43
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	99.43
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	99.43
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	99.43
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	99.43
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	99.43
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	99.43
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	99.43
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	99.43
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.43
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	99.42
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	99.42
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	99.42
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	99.42
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	99.42
3u23_A	65	CD2-associated protein; structural genomics, struc	99.42
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	99.42
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	99.42
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	99.42
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	99.42
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	99.42
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	99.42
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	99.42
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	99.42
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	99.42
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	99.42
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	99.42
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	99.42
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	99.42
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	99.42
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	99.42
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	99.42
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	99.42
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.42
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	99.42
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	99.42
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	99.42
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	99.42
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	99.42
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.42
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	99.42
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	99.42
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	99.41
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	99.41
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	99.41
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	99.41
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	99.41
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	99.41
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	99.41
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	99.41
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	99.41
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	99.41
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	99.41
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	99.41
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	99.41
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	99.41
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	99.41
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	99.41
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	99.41
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	99.41
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	99.41
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	99.41
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	99.41
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	99.41
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	99.41
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	99.41
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	99.41
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	99.41
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.41
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	99.41
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	99.4
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	99.4
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	99.4
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	99.4
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	99.4
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	99.4
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	99.4
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	99.4
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	99.4
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	99.4
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	99.4
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	99.4
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.4
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	99.4
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	99.39
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	99.39
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	99.39
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	99.39
1wxb_A	68	Epidermal growth factor receptor pathway substrate	99.39
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.39
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	99.39
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	99.39
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	99.39
4glm_A	72	Dynamin-binding protein; SH3 domain, DNMBP, struct	99.39
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	99.39
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	99.39
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	99.39
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	99.39
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	99.39
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.39
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	99.39
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	99.39
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	99.39
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	99.39
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	99.39
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	99.39
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	99.39
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	99.39
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	99.38
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	99.38
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	99.38
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	99.38
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	99.38
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	99.38
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	99.38
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	99.38
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	99.38
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	99.38
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	99.38
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	99.38
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	99.38
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	99.38
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	99.38
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	99.37
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	99.37
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	99.37
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	99.37
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	99.37
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	99.37
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	99.37
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	99.37
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	99.37
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	99.37
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	99.37
1i07_A	60	Epidermal growth factor receptor kinase substrate	99.37
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	99.37
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	99.37
1v1c_A	71	Obscurin; muscle, sarcomere, adapter, myogenesis,	99.37
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.36
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	99.36
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	99.36
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	99.36
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	99.36
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	99.36
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	99.36
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	99.36
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	99.36
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	99.36
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.36
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	99.36
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	99.35
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	99.35
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	99.35
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	99.35
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.35
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	99.35
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	99.34
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	99.34
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	99.34
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	99.34
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	99.34
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	99.34
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	99.33
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	99.33
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	99.33
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	99.33
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	99.32
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.32
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	99.32
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	99.32
2m0y_A	74	Dedicator of cytokinesis protein 1; apoptosis; NMR	99.32
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	99.32
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	99.32
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	99.31
1wxb_A	68	Epidermal growth factor receptor pathway substrate	99.31
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	99.31
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	99.31
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	99.31
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	99.31
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	99.3
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	99.3
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	99.29
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	99.27
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	99.27
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	99.27
2m0y_A	74	Dedicator of cytokinesis protein 1; apoptosis; NMR	99.27
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	99.27
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	99.27
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	99.27
1awj_A	77	ITK; transferase, regulatory intramolecular comple	99.27
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	99.27
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	99.27
1awj_A	77	ITK; transferase, regulatory intramolecular comple	99.26
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	99.26
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	99.26
1v1c_A	71	Obscurin; muscle, sarcomere, adapter, myogenesis,	99.26
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	99.26
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	99.25
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	99.25
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	99.25
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	99.23
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	99.23
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	99.23
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	99.22
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	99.22
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	99.22
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	99.22
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	99.21
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	99.21
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	99.21
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	99.19
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	99.17
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	99.16
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	99.11
3or8_A	197	Transcription elongation factor SPT6; SH2, CTD bin	99.06
1u3o_A	82	Huntingtin-associated protein-interacting protein;	99.03

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=100.00  E-value=3.4e-48  Score=387.54  Aligned_cols=262  Identities=52%  Similarity=0.891  Sum_probs=208.6

Q ss_pred             CCCCCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecC------------
Q psy10852          1 MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN------------   68 (563)
Q Consensus         1 ~~~~~~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~------------   68 (563)
                      |+++++.++.++||||.|+|++||++|+. ..+|+||||+|++.+|.|+|||+.+++|+||+|.+...            
T Consensus         1 ~~~~~~~~~~~~WyhG~isR~eAe~lL~~-~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~   79 (304)
T 2eyz_A            1 MAGNFDSEERSSWYWGRLSRQEAVALLQG-QRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPP   79 (304)
T ss_dssp             CCSSCCCSSSSSSCCCCCCSSHHHHTTTT-CCSSCEECCSCCSSSSCCEEEECSSSSCEEEECCCCSSCCSSCCCCCCCS
T ss_pred             CCCccccccCCCCccCCCCHHHHHHHhcC-CCCCEEEEEeCCCCCCCEEEEEEECCEEEEEEEeeccccccccccccccc
Confidence            89999999999999999999999999975 45699999999998999999999999999999998311            


Q ss_pred             ---CCcceEEEeCCceecChHhhHHhhhcccCCCcccccccccc------------ceeeeecccCCCCCCCCCcCCCCC
Q psy10852         69 ---TEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKT------------IEKVIAKYDFDGNDPDDLPFKKND  133 (563)
Q Consensus        69 ---~~~~~~~~~~~~~F~sl~~Li~~y~~~~~~~~~L~~p~~~~------------~~~~~a~~d~~~~~~~eLs~~~Gd  133 (563)
                         .++  +|.+++..|.||.+||+||+.+++..+.|+.||.+.            ...++|+|+|.++.++||+|++||
T Consensus        80 ~~~~~~--~~~~~~~~F~sl~~LV~~y~~~~l~~~~L~~P~~~~~~~~g~~~~~~~~~~~~alydy~~~~~~eLsf~~Gd  157 (304)
T 2eyz_A           80 PGVSPS--RLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGD  157 (304)
T ss_dssp             SSSSCC--CCCBTTBCCSCHHHHHTTTTTSCCSSSSSCCBCCSCSCCSCCCCCCCCCCEEEECSCCCCSCSSSCCCCTTC
T ss_pred             cccCCC--eEEeCCcEECCHHHHHHHhhhCccccceeccccccccccccccCCcccceeEEEEeeecCCCCCcCcccCCC
Confidence               112  388888999999999999999998888899999763            346899999999999999999999


Q ss_pred             EEEEEEecCCCeeEEeeCCCeeeEEecCceeeccccccccc-ccccccCCCCC-----CCCCCCCCcc--ccccccccCc
Q psy10852        134 ILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILS-LRNLHLDSSSH-----HVPQQQTTPV--RKTHLEVKLP  205 (563)
Q Consensus       134 ~i~vl~~~~~~ww~g~~~~g~~G~fP~~yv~~~~~~~~~~~-~~~~~~~g~~~-----~~~~~~~~~~--~~~~~~~~~p  205 (563)
                      +|.|+++.+++||.|++.+|+.||||++||+.+........ ...-...+...     +.+.....+.  .........+
T Consensus       158 ~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~p~~~~~~p~~~~~~  237 (304)
T 2eyz_A          158 ILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGP  237 (304)
T ss_dssp             EEEEEECCSSSEEEEECTTSCEEEEESTTEEECCCSTTSCCCCCCCSSCCSCCCSCSCCCSBTTBCSSSSCSSSCCSSCC
T ss_pred             EEEEEEecCCCcEEEEeCCCceeccchhccccccCCCcccccccCCCcCCCCCCCCCCCCcccccccccccccCCCCCCC
Confidence            99999999999999998899999999999998865422210 00000000000     0000000000  0000012234


Q ss_pred             cceeeeeccccCCCCCCceeeccCCEEEEeeecCCCceeeeeCCceeeccccceeecCCC
Q psy10852        206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN  265 (563)
Q Consensus       206 ~~~~~~~~~~~~a~~~~eLsf~~Gd~v~V~~~~~~~W~~g~~~g~~G~~P~~~ve~~~~~  265 (563)
                      ..++|+++|.+++..++||+|++||+|.|+++.++|||+|+++|+.||||.+||+.+...
T Consensus       238 ~~~~al~d~~~~a~~~~eL~~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~  297 (304)
T 2eyz_A          238 IYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQQ  297 (304)
T ss_dssp             CCSCCSSCBCCCTTCSSCCCBCTTSCCEEEEECTTSCEEEEETTEEEECCCTTSCCCSSC
T ss_pred             EEEEEeeeecCCCCCCCeecccCCCEEEEEEecCCCeEEEEECCceEEechHHEEECCCC
Confidence            567788888777889999999999999999999999999999999999999999998753

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=100.00  E-value=1.5e-46  Score=376.87  Aligned_cols=261  Identities=34%  Similarity=0.592  Sum_probs=145.7

Q ss_pred             CCCCCCCCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEecCCCCcceEEEEEECCe---EEEEEEEE-ecCCCc---ce
Q psy10852          2 TGTFDPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNK---VSHYIINK-ITNTEQ---QT   73 (563)
Q Consensus         2 ~~~~~~~~~~~w~~g~i~r~~ae~~L~~-~~~~G~FLvR~s~~~~~~~~lsv~~~~~---v~h~~I~~-~~~~~~---~~   73 (563)
                      .++++.++.++||||.|+|++||++|+. ...+|+||||+| +.+|.|+|||+.+++   |+||+|.+ ..+.+|   . 
T Consensus        32 ~~~~~~l~~~~Wyhg~i~R~~Ae~lL~~~~~~~G~FLVR~S-~~~g~y~LSv~~~~~~~~v~H~~I~~~~~~~~g~~~g-  109 (308)
T 3qwy_A           32 TNGFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDS-SRPGEYSLTVREADEGNAVCHYLIERGEPKEDGTAAA-  109 (308)
T ss_dssp             --CCCGGGGGGGEETTCCHHHHHHHHHSTTCCTTEEEEEEC-SSTTCEEEEEECCSSSSCEEEEEEEECCCCTTTTCCC-
T ss_pred             ccccCcccccccccCCCCHHHHHHHHhccCCCCceEEEEcc-CCCCCEEEEEEeCCCCCceEEEEEeeccCCCcCcccc-
Confidence            3578899999999999999999999987 566799999999 779999999999999   99999998 554221   1 


Q ss_pred             EEEeCCceecChHhhHHhhhcccCCCccccccccc-cceeeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEeeCC
Q psy10852         74 CYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK-TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS  152 (563)
Q Consensus        74 ~~~~~~~~F~sl~~Li~~y~~~~~~~~~L~~p~~~-~~~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~~~  152 (563)
                      .|++++..|.||.+||+||+.+++..+.|..|+.+ ....++|+|||.++.++||+|++||+|.|+++.+++||.|++.+
T Consensus       110 ~~~~~~~~F~Sl~eLv~~y~~~~~~~~~L~~P~~~p~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~  189 (308)
T 3qwy_A          110 GVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNAL  189 (308)
T ss_dssp             CEEETTEEESSHHHHHHHHHHSCSSSCCCCEECCCCCCEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEECTT
T ss_pred             eEEEeCeeeCCHHHHHHHHhhcccccchhccccccccceeEEEeceEcCCCCCcCcCCCCCEEEEEEcCCCCeEEEEeCC
Confidence            38999999999999999999999888889999987 46789999999999999999999999999999999999999779


Q ss_pred             CeeeEEecCceeeccccccccccc-ccccCCCCC---CCCC-CCCCccccccccccCccceeeeeccccCCCCCCceeec
Q psy10852        153 GEVGSIPVPYVQKYSEGMSILSLR-NLHLDSSSH---HVPQ-QQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLE  227 (563)
Q Consensus       153 g~~G~fP~~yv~~~~~~~~~~~~~-~~~~~g~~~---~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~a~~~~eLsf~  227 (563)
                      |+.||||++||+............ .....+...   +.+. +...+...+.....++..++|+++|.+++..++||+|+
T Consensus       190 g~~G~~P~~yv~~~~~~~~~~~~~~~~~ss~~ss~s~p~p~s~ps~~sp~p~~~~~~~~~a~alyd~~~~~~~~~ELs~~  269 (308)
T 3qwy_A          190 GTTGLVPANYVQIQMEFHNDRTSKGASQSSIGSSGGGAERFSSASTSSDNIELQPRLPAKAKVTFDRVPNAYDPTQLRVK  269 (308)
T ss_dssp             SCEEEEEGGGEEEC------------------------------------------------------------------
T ss_pred             CCeeEecccccccccccccCccccccccCCCCCccccccccccccccCcccccccccccccccccccccccCCcccceeC
Confidence            999999999999432211100000 000000000   0000 00000111111223356788888888888888999999


Q ss_pred             cCCEEEEeeecCCCceeeeeCCceeeccccceeecCC
Q psy10852        228 IGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT  264 (563)
Q Consensus       228 ~Gd~v~V~~~~~~~W~~g~~~g~~G~~P~~~ve~~~~  264 (563)
                      +||+|.|+++.++|||+|+++|+.|+||.+||+.++.
T Consensus       270 ~Gd~i~v~~~~~~~ww~g~~~g~~G~fP~~yv~~~~~  306 (308)
T 3qwy_A          270 KGQTVLVTQKMSNGMYKAELDGQIGSVPHTYLRFTAV  306 (308)
T ss_dssp             -------------------------------------
T ss_pred             CCCEEEEEEEcCCCcEEEEECCeeEEechHHeEEecC
Confidence            9999999999999999999999999999999999863

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=100.00  E-value=4.1e-45  Score=365.20  Aligned_cols=265  Identities=51%  Similarity=0.880  Sum_probs=208.0

Q ss_pred             cCCCCCCCCCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecC-------------
Q psy10852        277 TGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN-------------  343 (563)
Q Consensus       277 ~~~~~~~~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~-------------  343 (563)
                      +..++.++...||||.|+|.+|+.+|.. ..+|+||||.|.+.+|.|+||++.++.|+||+|.....             
T Consensus         2 ~~~~~~~~~~~WyhG~isR~eAe~lL~~-~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~   80 (304)
T 2eyz_A            2 AGNFDSEERSSWYWGRLSRQEAVALLQG-QRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPP   80 (304)
T ss_dssp             CSSCCCSSSSSSCCCCCCSSHHHHTTTT-CCSSCEECCSCCSSSSCCEEEECSSSSCEEEECCCCSSCCSSCCCCCCCSS
T ss_pred             CCccccccCCCCccCCCCHHHHHHHhcC-CCCCEEEEEeCCCCCCCEEEEEEECCEEEEEEEeecccccccccccccccc
Confidence            3456778888999999999999999964 56799999999999999999999999999999988311             


Q ss_pred             -CCcceeEEeCCcccCChhhHHhhhhcccCCCCcccccccc------------ceeeEEEeecccCCCCCCCCCCCCCEE
Q psy10852        344 -TEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK------------TIEKVIAKYDFDGNDPDDLPFKKNDIL  410 (563)
Q Consensus       344 -~~~~~~~~i~~~~f~sl~~lv~~y~~~~~~~~~l~~P~~~------------~~~~~~a~~~y~~~~~~el~~~~g~~v  410 (563)
                       .... .|.+++..|+||.+||+||+.+.+..+.|..|+++            ....++|+|+|.++.++||+|++||+|
T Consensus        81 ~~~~~-~~~~~~~~F~sl~~LV~~y~~~~l~~~~L~~P~~~~~~~~g~~~~~~~~~~~~alydy~~~~~~eLsf~~Gd~i  159 (304)
T 2eyz_A           81 GVSPS-RLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDIL  159 (304)
T ss_dssp             SSSCC-CCCBTTBCCSCHHHHHTTTTTSCCSSSSSCCBCCSCSCCSCCCCCCCCCCEEEECSCCCCSCSSSCCCCTTCEE
T ss_pred             ccCCC-eEEeCCcEECCHHHHHHHhhhCccccceeccccccccccccccCCcccceeEEEEeeecCCCCCcCcccCCCEE
Confidence             0112 27778899999999999999999887788888764            235799999999999999999999999


Q ss_pred             EEEEecCCCcEEEEecCCcEEEEcCCCeEeccCCccccc-ccccCC-----CCCCCCCCCCCCCccccccc--ccccccc
Q psy10852        411 IVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILS-LRNLHL-----DSSSHHVPQQQTTPVRKTHL--EVKLPAF  482 (563)
Q Consensus       411 ~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~~~  482 (563)
                      .|+.+.+++||.|++.+|+.||||++||+.+........ ......     .+.+.+.++....+......  ......+
T Consensus       160 ~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~p~~~~~~p~~~~~~~~  239 (304)
T 2eyz_A          160 RIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIY  239 (304)
T ss_dssp             EEEECCSSSEEEEECTTSCEEEEESTTEEECCCSTTSCCCCCCCSSCCSCCCSCSCCCSBTTBCSSSSCSSSCCSSCCCC
T ss_pred             EEEEecCCCcEEEEeCCCceeccchhccccccCCCcccccccCCCcCCCCCCCCCCCCcccccccccccccCCCCCCCEE
Confidence            999999999999987799999999999998876522111 000000     00000111111111000111  1233457


Q ss_pred             eEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCCCCC
Q psy10852        483 ARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS  543 (563)
Q Consensus       483 ~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~~~~  543 (563)
                      ++|+++|.+++++++||+|++||+|.|+++.++|||+|+++|++||||++||+.++..+..
T Consensus       240 ~~al~d~~~~a~~~~eL~~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~~~~  300 (304)
T 2eyz_A          240 ARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQQNPE  300 (304)
T ss_dssp             SCCSSCBCCCTTCSSCCCBCTTSCCEEEEECTTSCEEEEETTEEEECCCTTSCCCSSCCTT
T ss_pred             EEEeeeecCCCCCCCeecccCCCEEEEEEecCCCeEEEEECCceEEechHHEEECCCCCcc
Confidence            8999999988888999999999999999999999999999999999999999999776553

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=100.00  E-value=2.9e-48  Score=387.88  Aligned_cols=257  Identities=52%  Similarity=0.890  Sum_probs=208.7

Q ss_pred             CCCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeCCcee
Q psy10852          3 GTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTF   82 (563)
Q Consensus         3 ~~~~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F   82 (563)
                      ++++.|+.++||||.|+|++||++|+.. .+|+||||+|++.+|.|+|||+.+++|+||+|.+..++    .|.+++..|
T Consensus         4 ~~~d~~~~~~Wyhg~isR~~Ae~lL~~~-~~G~FLvR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g----~~~~~~~~F   78 (303)
T 2lqn_A            4 ARFDSSDRSAWYMGPVSRQEAQTRLQGQ-RHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNR----RFKIGDQEF   78 (303)
Confidence            6789999999999999999999999876 56999999999889999999999999999999986544    488989999


Q ss_pred             cChHhhHHhhhcccCCCccccccccc-------------------cceeeeecccCCCCCCCCCcCCCCCEEEEEEecCC
Q psy10852         83 SDLPSLLAFYKVHYLDTSPLIKPATK-------------------TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEE  143 (563)
Q Consensus        83 ~sl~~Li~~y~~~~~~~~~L~~p~~~-------------------~~~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~  143 (563)
                      .||.+||+||+++++..+.|+.||.+                   ....++|+|||.++.++||+|++||+|.|+++.++
T Consensus        79 ~sl~~Lv~~y~~~~~~~~~L~~P~~r~~~~~~~~~~~p~~~~~~~~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~  158 (303)
T 2lqn_A           79 DHLPALLEFYKIHYLDTTTLIEPAPRYPSPPMGSVSAPNLPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEE  158 (303)
Confidence            99999999999999988889999987                   23569999999999999999999999999999999


Q ss_pred             CeeEEeeCCCeeeEEecCceeecccccccccccccc--cCCCCCC-----CCC--CCCC--------ccccccccccCcc
Q psy10852        144 HWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLH--LDSSSHH-----VPQ--QQTT--------PVRKTHLEVKLPA  206 (563)
Q Consensus       144 ~ww~g~~~~g~~G~fP~~yv~~~~~~~~~~~~~~~~--~~g~~~~-----~~~--~~~~--------~~~~~~~~~~~p~  206 (563)
                      +||.|++.+|++||||++||+++.............  ..+...+     .+.  .+..        ...........+.
T Consensus       159 ~Ww~~~~~~g~~G~~P~~yv~~~~~~~~~~~~~s~~~~~~~~p~~s~~~~~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~  238 (303)
T 2lqn_A          159 QWWSARNKDGRVGMIPVPYVEKLVRSSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPV  238 (303)
Confidence            999999789999999999999887543211100000  0000000     000  0000        0000011233456


Q ss_pred             ceeeeeccccCCCCCCceeeccCCEEEEeeecCCCceeeeeCCceeeccccceeecCC
Q psy10852        207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT  264 (563)
Q Consensus       207 ~~~~~~~~~~~a~~~~eLsf~~Gd~v~V~~~~~~~W~~g~~~g~~G~~P~~~ve~~~~  264 (563)
                      .++|+++|.+++..++||+|++||+|.|+++.++|||+|+++|+.||||++||+.+..
T Consensus       239 ~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~  296 (303)
T 2lqn_A          239 FAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDP  296 (303)
Confidence            7888899888888899999999999999999999999999999999999999999875

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=100.00  E-value=2e-44  Score=361.54  Aligned_cols=256  Identities=34%  Similarity=0.572  Sum_probs=140.5

Q ss_pred             CCCCCccccccCHHHHHHHHhc-CCCCCcEEEEecCCCCcceEEEEEeCCe---eEEEEEee-ecCCCc---ceeEEeCC
Q psy10852        283 HDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNK---VSHYIINK-ITNTEQ---QTCYKIGD  354 (563)
Q Consensus       283 ~~~~~w~~g~~sr~~A~~~l~~-~~~~G~FlvR~S~~~~g~~~ls~~~~~~---v~h~~I~~-~~~~~~---~~~~~i~~  354 (563)
                      ++...||||.|+|.+|+++|.. .+.+|+||||+| +.+|.|+||++.+++   |+||+|.. ..+.++   . .|++++
T Consensus        38 l~~~~Wyhg~i~R~~Ae~lL~~~~~~~G~FLVR~S-~~~g~y~LSv~~~~~~~~v~H~~I~~~~~~~~g~~~g-~~~~~~  115 (308)
T 3qwy_A           38 FEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDS-SRPGEYSLTVREADEGNAVCHYLIERGEPKEDGTAAA-GVKIAN  115 (308)
T ss_dssp             GGGGGGEETTCCHHHHHHHHHSTTCCTTEEEEEEC-SSTTCEEEEEECCSSSSCEEEEEEEECCCCTTTTCCC-CEEETT
T ss_pred             ccccccccCCCCHHHHHHHHhccCCCCceEEEEcc-CCCCCEEEEEEeCCCCCceEEEEEeeccCCCcCcccc-eEEEeC
Confidence            4456999999999999999988 677899999999 889999999999998   99999988 554222   2 289999


Q ss_pred             cccCChhhHHhhhhcccCCCCcccccccc-ceeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEE
Q psy10852        355 KTFSDLPSLLAFYKVHYLDTSPLIKPATK-TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSI  433 (563)
Q Consensus       355 ~~f~sl~~lv~~y~~~~~~~~~l~~P~~~-~~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~  433 (563)
                      ..|+++.+||+||+.+.+..+.|..|+++ ....++|+|+|.++.++||+|++||+|.|+.+.+++||+|++.+|+.|||
T Consensus       116 ~~F~Sl~eLv~~y~~~~~~~~~L~~P~~~p~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~  195 (308)
T 3qwy_A          116 QSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLV  195 (308)
T ss_dssp             EEESSHHHHHHHHHHSCSSSCCCCEECCCCCCEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEECTTSCEEEE
T ss_pred             eeeCCHHHHHHHHhhcccccchhccccccccceeEEEeceEcCCCCCcCcCCCCCEEEEEEcCCCCeEEEEeCCCCeeEe
Confidence            99999999999999999888889999876 46789999999999999999999999999999999999998669999999


Q ss_pred             cCCCeEeccCCccccc----ccccCCCCCCCCCCCCC-CCcccccccccccccceEEeecCCCCCCCCCCeeccCCCEEE
Q psy10852        434 PVPYVQKYSEGMSILS----LRNLHLDSSSHHVPQQQ-TTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIK  508 (563)
Q Consensus       434 P~~~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~eL~~~~gd~i~  508 (563)
                      |++||+..........    ...+.......+.+.+. ..+..........+.+++|+++|.+++++++||+|++||+|.
T Consensus       196 P~~yv~~~~~~~~~~~~~~~~~ss~~ss~s~p~p~s~ps~~sp~p~~~~~~~~~a~alyd~~~~~~~~~ELs~~~Gd~i~  275 (308)
T 3qwy_A          196 PANYVQIQMEFHNDRTSKGASQSSIGSSGGGAERFSSASTSSDNIELQPRLPAKAKVTFDRVPNAYDPTQLRVKKGQTVL  275 (308)
T ss_dssp             EGGGEEEC------------------------------------------------------------------------
T ss_pred             cccccccccccccCccccccccCCCCCccccccccccccccCcccccccccccccccccccccccCCcccceeCCCCEEE
Confidence            9999994432211000    00000000000001000 000001111222256899999998888778999999999999


Q ss_pred             EEEeCCCCEEEEEeCCeeeeecCCceEEcCCC
Q psy10852        509 VTKTNINGQWEGELNGKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       509 v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~  540 (563)
                      |+++.++|||+|+++|++||||++||++|+..
T Consensus       276 v~~~~~~~ww~g~~~g~~G~fP~~yv~~~~~~  307 (308)
T 3qwy_A          276 VTQKMSNGMYKAELDGQIGSVPHTYLRFTAVS  307 (308)
T ss_dssp             --------------------------------
T ss_pred             EEEEcCCCcEEEEECCeeEEechHHeEEecCC
Confidence            99998899999999999999999999998754

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=100.00  E-value=1.9e-45  Score=367.53  Aligned_cols=259  Identities=52%  Similarity=0.905  Sum_probs=206.5

Q ss_pred             CCCCCCCCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeCCcccC
Q psy10852        279 TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFS  358 (563)
Q Consensus       279 ~~~~~~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~~~~f~  358 (563)
                      .++.++...||||.|+|.+|+.+|... .+|+||||.|++.+|.|+||++.++.++||+|....++    .|.+.+..|+
T Consensus         5 ~~d~~~~~~Wyhg~isR~~Ae~lL~~~-~~G~FLvR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g----~~~~~~~~F~   79 (303)
T 2lqn_A            5 RFDSSDRSAWYMGPVSRQEAQTRLQGQ-RHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNR----RFKIGDQEFD   79 (303)
Confidence            356777889999999999999999876 67999999999999999999999999999999986443    2888889999


Q ss_pred             ChhhHHhhhhcccCCCCcccccccc-------------------ceeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCC
Q psy10852        359 DLPSLLAFYKVHYLDTSPLIKPATK-------------------TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH  419 (563)
Q Consensus       359 sl~~lv~~y~~~~~~~~~l~~P~~~-------------------~~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~  419 (563)
                      ||.+||+||+.+.+..+.|..|+++                   ....++|+|+|.++.++||+|++||+|.|+.+.+++
T Consensus        80 sl~~Lv~~y~~~~~~~~~L~~P~~r~~~~~~~~~~~p~~~~~~~~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~  159 (303)
T 2lqn_A           80 HLPALLEFYKIHYLDTTTLIEPAPRYPSPPMGSVSAPNLPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQ  159 (303)
Confidence            9999999999999877778888765                   245799999999999999999999999999999999


Q ss_pred             cEEEEecCCcEEEEcCCCeEeccCCcccccccccC-----CCCCCC--CCCC-----CCCCc-----ccccccccccccc
Q psy10852        420 WWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLH-----LDSSSH--HVPQ-----QQTTP-----VRKTHLEVKLPAF  482 (563)
Q Consensus       420 W~~~~~~~g~~G~~P~~~v~~~~~~~~~~~~~~~~-----~~~~~~--~~~~-----~~~~~-----~~~~~~~~~~~~~  482 (563)
                      ||+|++.+|+.||||++||+.+.............     ....+.  ..+.     +....     ............+
T Consensus       160 Ww~~~~~~g~~G~~P~~yv~~~~~~~~~~~~~s~~~~~~~~p~~s~~~~~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  239 (303)
T 2lqn_A          160 WWSARNKDGRVGMIPVPYVEKLVRSSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVF  239 (303)
Confidence            99998678999999999999887652211100000     000000  0000     00000     0000112234568


Q ss_pred             eEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCCCC
Q psy10852        483 ARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET  542 (563)
Q Consensus       483 ~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~~~  542 (563)
                      ++|+++|.+++.+++||+|++||+|.|+++.++|||+|+++|++||||++||+.++....
T Consensus       240 ~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~~~  299 (303)
T 2lqn_A          240 AKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQNP  299 (303)
Confidence            999999998887888999999999999999999999999999999999999999976554

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=100.00  E-value=1.3e-36  Score=290.17  Aligned_cols=207  Identities=27%  Similarity=0.518  Sum_probs=176.9

Q ss_pred             eeeccccCCCCCCceeeccCCEEEEeeec-CCCceeeeeCCceeeccccceeecCCCCCCCCCCCCCccCCCCCCCCCCc
Q psy10852        210 VKQVRVPNAYDKTALKLEIGDIIKVTKTN-INGQWEGELNGKTGHFPFTHVEFIPTNETMPFHSSMKMTGTFDPHDRNSW  288 (563)
Q Consensus       210 ~~~~~~~~a~~~~eLsf~~Gd~v~V~~~~-~~~W~~g~~~g~~G~~P~~~ve~~~~~~~~p~~~~~~~~~~~~~~~~~~w  288 (563)
                      +++.|.+.+..++||+|++||+|.|+++. +++||+|+.+|+.|+||.+||+...                      .+|
T Consensus         3 ~~al~~~~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~~~~~g~~G~~P~~yv~~~~----------------------~~w   60 (217)
T 1gri_A            3 AIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKP----------------------HPW   60 (217)
T ss_dssp             EEECSCBCCCSSSCCCBCTTCEEEC------CCEEEEESSSCEEEEEGGGEECCC----------------------CSS
T ss_pred             EEEeeccCCcCCCcCCCCCCCEEEEEeccCCCCeEeeccCCccceECCccccccc----------------------chh
Confidence            44455567889999999999999999887 6789999999999999999998664                      289


Q ss_pred             cccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeCCcccCChhhHHhhhh
Q psy10852        289 YFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYK  368 (563)
Q Consensus       289 ~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~~~~f~sl~~lv~~y~  368 (563)
                      |+|.++|.+|+.+|.....+|+||||.|++.+|+|+|+++.++.++|++|.....+    .|.+....|+++.+||+||+
T Consensus        61 ~~g~isr~~ae~lL~~~~~~G~fLvR~S~~~~g~~~LSv~~~~~v~h~~I~~~~~g----~~~~~~~~f~sl~eLv~~~~  136 (217)
T 1gri_A           61 FFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAG----KYFLWVVKFNSLNELVDYHR  136 (217)
T ss_dssp             BCTTCCHHHHHHHHHTCSSTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEECSSS----CEESSSCEESSHHHHHHHHH
T ss_pred             hcccCCHHHHHHHHhccCCCceEEEEccCCCCCCEEEEEEECCEEEEEEEEEcCCC----CEEEeeeEcCCHHHHHHhhh
Confidence            99999999999999777788999999999999999999999999999999987554    37888899999999999999


Q ss_pred             cccCCCCc---cc--cccccceeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccC
Q psy10852        369 VHYLDTSP---LI--KPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  443 (563)
Q Consensus       369 ~~~~~~~~---l~--~P~~~~~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~  443 (563)
                      .+++....   +.  .|.+.....++|+|+|.++.++||+|++||+|.|+.+.++|||.|+ .+|+.||||++||+++..
T Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~~~al~~y~~~~~~eL~~~~Gd~i~v~~~~~~~W~~g~-~~g~~G~~P~~yv~~~~~  215 (217)
T 1gri_A          137 STSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGA-CHGQTGMFPRNYVTPVNR  215 (217)
T ss_dssp             HSCSSSSTTCCCCBCCCCCCCCCEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEE-CSSCEEEEEGGGEEEECC
T ss_pred             ccccccccceeecccccCCCCceEEEecCCccCCCCCcCCCCCCCEEEEEEeCCCCeEEEE-ECCeEEEEeHHHeEECCC
Confidence            88765432   11  1223346789999999999999999999999999999999999998 589999999999998864

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans}

Probab=100.00  E-value=3.2e-36  Score=276.55  Aligned_cols=161  Identities=37%  Similarity=0.711  Sum_probs=145.4

Q ss_pred             CCCCCCCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEecCCCCcceEEEEEECCe---EEEEEEEE-ecCCCc---ceE
Q psy10852          3 GTFDPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNK---VSHYIINK-ITNTEQ---QTC   74 (563)
Q Consensus         3 ~~~~~~~~~~w~~g~i~r~~ae~~L~~-~~~~G~FLvR~s~~~~~~~~lsv~~~~~---v~h~~I~~-~~~~~~---~~~   74 (563)
                      ++++.++.++||||.|+|++||++|+. +..+|+||||+| +.+|.|+|||+.++.   |+||+|.+ ....+|   . .
T Consensus         4 ~~~~~l~~~~Wyhg~isR~~Ae~lL~~~~~~~G~FLVR~S-~~~g~y~LSv~~~~~~~~v~H~~I~~~~~~~~g~~~~-~   81 (174)
T 3qwx_X            4 NGFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDS-SRPGEYSLTVREADEGNAVCHYLIERGEPKEDGTAAA-G   81 (174)
T ss_dssp             CCSCGGGGGGGEETTCCHHHHHHHHHSTTCCTTEEEEEEC-SSTTCEEEEEECCSSSSCEEEEEEEECCCCTTSSSCC-C
T ss_pred             cccCccccCCCccCCCCHHHHHHHHhccCCCCCeEEEEec-CCCCCEEEEEEECCCCCceEEEEEEeccCCCCCcccc-e
Confidence            579999999999999999999999987 566799999999 779999999999999   99999998 332222   1 3


Q ss_pred             EEeCCceecChHhhHHhhhcccCCCccccccccc-cceeeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEeeCCC
Q psy10852         75 YKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK-TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISG  153 (563)
Q Consensus        75 ~~~~~~~F~sl~~Li~~y~~~~~~~~~L~~p~~~-~~~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~~~g  153 (563)
                      |.+++..|.||.+||+||+.+++..+.|..|+++ ....++|+|||.++.++||+|++||+|.|+++.+++||.|++.+|
T Consensus        82 ~~~~~~~F~sl~eLv~~y~~~~~~~~~L~~P~~~p~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g  161 (174)
T 3qwx_X           82 VKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALG  161 (174)
T ss_dssp             EEETTEEESSHHHHHHHTTSSCSSSCCCCEECCCCCSEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEECTTC
T ss_pred             EEECCeecCcHHHHhhhhhcCcccccccccccccccccEEEEecCcccCCCCccccccCCEEEEEEccCCCeEEEEECCC
Confidence            8888999999999999999999878889999987 567899999999999999999999999999999999999998899


Q ss_pred             eeeEEecCceee
Q psy10852        154 EVGSIPVPYVQK  165 (563)
Q Consensus       154 ~~G~fP~~yv~~  165 (563)
                      ++||||+|||+.
T Consensus       162 ~~G~~P~nyv~~  173 (174)
T 3qwx_X          162 TTGLVPANYVQI  173 (174)
T ss_dssp             CEEEEEGGGEEE
T ss_pred             CEEEEChHHEEe
Confidence            999999999974

>4fbn_A 1-phosphatidylinositol 4,5-bisphosphate phosphodi gamma-1; SH2 domain, plcgamma specific array, interaction domain, FIB growth factor receptor 1; 2.40A {Homo sapiens} PDB: 4ey0_A* 3gqi_B* 2fci_A* 2pld_A* 2ple_A*

Probab=100.00  E-value=6.1e-36  Score=288.13  Aligned_cols=202  Identities=27%  Similarity=0.516  Sum_probs=159.1

Q ss_pred             CCCCCccccCC-----CHHHHHHHHcC-----CCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEe
Q psy10852          8 HDRNSWYFGMM-----TRQEAQAILLS-----EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKI   77 (563)
Q Consensus         8 ~~~~~w~~g~i-----~r~~ae~~L~~-----~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~   77 (563)
                      |.+++||||.|     +|++||++|++     ...+|+||||+|++.+|.|+|||+.+++|+||+|....+++.. .|.+
T Consensus         1 H~~e~WfhG~i~~~~~sR~~AE~lL~~~~~~~~~~dG~FLVR~S~s~~G~y~LSv~~~~~v~H~~I~~~~~~g~~-~~~~   79 (246)
T 4fbn_A            1 HSNEKWFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGKVQHCRIHSRQDAGTP-KFFL   79 (246)
T ss_dssp             --CCTTBCCCCSCC-CHHHHHHHHHHHHHHHHTCCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEEECGGGCC-EEEE
T ss_pred             CCCCCCcCCccccccCCHHHHHHHHHHhhhccCCCCCEEEEEcCCCCCCCEEEEEEECCEEEEEEEEEECCCCce-eEEe
Confidence            56789999999     79999999963     3567999999999999999999999999999999987653222 2544


Q ss_pred             -CCceecChHhhHHhhhcccCCCccccccccccceeeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEeeCCCeee
Q psy10852         78 -GDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVG  156 (563)
Q Consensus        78 -~~~~F~sl~~Li~~y~~~~~~~~~L~~p~~~~~~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~~~g~~G  156 (563)
                       ++..|.||.+||+||+++++....+..++..                                                
T Consensus        80 ~~~~~F~sl~~LV~~y~~~~l~~~~~~~~l~~------------------------------------------------  111 (246)
T 4fbn_A           80 TDNLVFDSLYDLITHYQQVPLRCNEFEMRLSE------------------------------------------------  111 (246)
T ss_dssp             ETTEEESSHHHHHHHHHHSCEECSSCEECCCC------------------------------------------------
T ss_pred             cCCcccCCHHHHHHhHhhcccccccccccccc------------------------------------------------
Confidence             6789999999999999886522111111100                                                


Q ss_pred             EEecCceeecccccccccccccccCCCCCCCCCCCCCccccccccccCccceeeeeccccCCCCCCceeeccCCEEEEee
Q psy10852        157 SIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTK  236 (563)
Q Consensus       157 ~fP~~yv~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~a~~~~eLsf~~Gd~v~V~~  236 (563)
                              ..                                      |                               
T Consensus       112 --------p~--------------------------------------p-------------------------------  114 (246)
T 4fbn_A          112 --------PV--------------------------------------P-------------------------------  114 (246)
T ss_dssp             --------BC--------------------------------------C-------------------------------
T ss_pred             --------cc--------------------------------------c-------------------------------
Confidence                    00                                      0                               


Q ss_pred             ecCCCceeeeeCCceeeccccceeecCCCCCCCCCCCCCccCCCCCCCCCCccccccCHHHHHHHHhcCCCCCcEEEEec
Q psy10852        237 TNINGQWEGELNGKTGHFPFTHVEFIPTNETMPFHSSMKMTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDS  316 (563)
Q Consensus       237 ~~~~~W~~g~~~g~~G~~P~~~ve~~~~~~~~p~~~~~~~~~~~~~~~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S  316 (563)
                                                                ..++++..+||||.|+|.+|+.+|.....+|+||||.|
T Consensus       115 ------------------------------------------~~~~~~~~~Wyhg~isr~~Ae~lL~~~~~~G~FLVR~s  152 (246)
T 4fbn_A          115 ------------------------------------------QTNAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKR  152 (246)
T ss_dssp             ------------------------------------------CSCGGGGSTTEESSCCHHHHHHHHHTSCCTTEEEEEEC
T ss_pred             ------------------------------------------ccCCcccCCeeecCccHHHHHHHHhhCCCCCeEEEEec
Confidence                                                      00122344899999999999999988767899999998


Q ss_pred             CCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeCCcccCChhhHHhhhhcccCCC-Ccccccccc
Q psy10852        317 NTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDT-SPLIKPATK  383 (563)
Q Consensus       317 ~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~~~~f~sl~~lv~~y~~~~~~~-~~l~~P~~~  383 (563)
                      . .++.|+||++.+++|+|++|...+..     |.+++..|+||.+||+||+.+++.. +.|..|+++
T Consensus       153 ~-~~g~y~Lsv~~~~~v~H~~I~~~~~~-----~~~~~~~F~sL~~Lv~~y~~~p~~~~~~L~~Pv~~  214 (246)
T 4fbn_A          153 N-EPNSYAISFRAEGKIKHCRVQQEGQT-----VMLGNSEFDSLVDLISYYEKHPLYRKMKLRYPINE  214 (246)
T ss_dssp             S-STTEEEEEEEETTEEEEEEEEEETTE-----EEETTEEESCHHHHHHHHHHSCSBTTBCCCEECSH
T ss_pred             C-CCCCEEEEEEeCCCeEEEEEEeCCCE-----EEeCCCccCCHHHHHHHhCcCCCCCCcCCCCcCCC
Confidence            5 48999999999999999999875432     8888899999999999999998754 678889875

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A

Probab=100.00  E-value=3.1e-36  Score=288.70  Aligned_cols=168  Identities=53%  Similarity=0.969  Sum_probs=150.0

Q ss_pred             CCCCCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCc---------
Q psy10852          1 MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ---------   71 (563)
Q Consensus         1 ~~~~~~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~---------   71 (563)
                      |.++++.++.++||||.|+|++||++|+. ..+|+||||+|++.+|.|+|||+.+++|+||+|.+...+.+         
T Consensus         3 i~~~~~~l~~~~WyhG~isR~eAe~lL~~-~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~   81 (230)
T 2dvj_A            3 MAGNFDSEERSSWYWGRLSRQEAVALLQG-QRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPP   81 (230)
T ss_dssp             CCSCCCSSSSSSSCCSSCCTTHHHHHHTT-SSSSCBEEECCSSCTTSCEEECCCSSSCCCEECBCCCSCCSSSSSSSSTT
T ss_pred             cCcccccccCCCcccCCCCHHHHHHHhcC-CCCceEEEEeCCCCCCCEEEEEEECCEEEEEEEEeCCCCccccccccccc
Confidence            56789999999999999999999999976 44699999999988999999999999999999998653211         


Q ss_pred             ----ceEEEeCCceecChHhhHHhhhcccCCCcccccccccc------------ceeeeecccCCCCCCCCCcCCCCCEE
Q psy10852         72 ----QTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKT------------IEKVIAKYDFDGNDPDDLPFKKNDIL  135 (563)
Q Consensus        72 ----~~~~~~~~~~F~sl~~Li~~y~~~~~~~~~L~~p~~~~------------~~~~~a~~d~~~~~~~eLs~~~Gd~i  135 (563)
                          ..+|.+++..|.||.+||+||+.+++..+.|+.||.+.            ...++|+|||.+++++||+|++||+|
T Consensus        82 ~g~~~~~~~~~~~~F~sl~~LV~~y~~~~l~~~~L~~Pv~~~~~~s~~~L~~~~~~~~~al~dy~~~~~~eLsf~~Gd~i  161 (230)
T 2dvj_A           82 PGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDIL  161 (230)
T ss_dssp             TSCCCCCEESSSCEESSHHHHHTTSTTTCSSSSCCCCBCCSCCCCCCCCCSCCCCCCCBCCSCCCCSSSSSCCCCSSCBC
T ss_pred             ccccceEEEeCCceeCCHHHHHHHHhhCccccccccccccccccccccccCcccceeEEEeeeecCCCCCCccCcCCCEE
Confidence                01388888999999999999999999888899999763            34689999999999999999999999


Q ss_pred             EEEEecCCCeeEEeeCCCeeeEEecCceeecccc
Q psy10852        136 IVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (563)
Q Consensus       136 ~vl~~~~~~ww~g~~~~g~~G~fP~~yv~~~~~~  169 (563)
                      .|+++.+++||.|++.+|+.||||++||++++..
T Consensus       162 ~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~  195 (230)
T 2dvj_A          162 RIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPA  195 (230)
T ss_dssp             CCCBCSCSSEEEEECTTSCEEEEEGGGSCCCCSS
T ss_pred             EEEEccCCCcEEEEeCCCCEEEEehHHeEEcCCC
Confidence            9999999999999988999999999999988754

>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70, tyrosine kinase, transferase; HET: PTR; 1.90A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A

Probab=100.00  E-value=2.9e-33  Score=272.12  Aligned_cols=246  Identities=26%  Similarity=0.390  Sum_probs=174.1

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeC-Cceec
Q psy10852          6 DPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFS   83 (563)
Q Consensus         6 ~~~~~~~w~~g~i~r~~ae~~L~~-~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~   83 (563)
                      |+.+.++||||.|+|++||++|+. ...+|+||||+|++.+|.|+|||+.++.|+||+|.+..++    .|.+. +..|.
T Consensus         1 d~~~~~~Wyhg~isR~~Ae~lL~~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g----~~~l~~~~~F~   76 (254)
T 2oq1_A            1 DPAAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNG----TYAIAGGKAHC   76 (254)
T ss_dssp             CTTTTCTTBCBSCCHHHHHHHHHHTTCCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTS----CEEETTSCCBS
T ss_pred             CccccCCccCCCCCHHHHHHHHhccCCCCcEEEEEeCCCCCCCEEEEEEECCeEEEEEEEEeCCC----CEEeCCCCccC
Confidence            577889999999999999999964 3457999999999988999999999999999999985544    37775 68999


Q ss_pred             ChHhhHHhhhcccCC-CccccccccccceeeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEeeCCCeeeEEecCc
Q psy10852         84 DLPSLLAFYKVHYLD-TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPY  162 (563)
Q Consensus        84 sl~~Li~~y~~~~~~-~~~L~~p~~~~~~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~~~g~~G~fP~~y  162 (563)
                      ||.+||+||+.++.+ .+.|..||+++..          .                    ..|         .+      
T Consensus        77 sl~~LV~~y~~~~~~l~~~L~~p~~~~~~----------~--------------------~~~---------~~------  111 (254)
T 2oq1_A           77 GPAELCEFYSRDPDGLPCNLRKPCNRPSG----------L--------------------EPQ---------PG------  111 (254)
T ss_dssp             SHHHHHHHHHHCCTTSSSCCCSBCCCCTT----------C--------------------CCB---------CC------
T ss_pred             CHHHHHHHHHhCCCCcccccccccCCCCC----------C--------------------CCC---------cc------
Confidence            999999999998865 5678888876210          0                    000         00      


Q ss_pred             eeecccccccccccccccCCCCCCCCCCCCCccccccccccCccceeeeeccccCCCCCCceeeccCCEEEEeeecCCCc
Q psy10852        163 VQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQ  242 (563)
Q Consensus       163 v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~a~~~~eLsf~~Gd~v~V~~~~~~~W  242 (563)
                        ..+.                                   +..  ..+..+                   |     ..+
T Consensus       112 --~f~~-----------------------------------i~~--~~l~~~-------------------v-----~~~  128 (254)
T 2oq1_A          112 --VFDC-----------------------------------LRD--AMVRDY-------------------V-----RQT  128 (254)
T ss_dssp             --HHHH-----------------------------------HHH--HHHHHH-------------------H-----HHH
T ss_pred             --cccc-----------------------------------hhH--HHHHHH-------------------H-----HHH
Confidence              0000                                   000  000000                   0     012


Q ss_pred             eeeee-CCceeecc-ccceeecCCCCCCCCCCCCCccCCCCCCCCCCccccccCHHHHHHHHhcC-CCCCcEEEEecCCC
Q psy10852        243 WEGEL-NGKTGHFP-FTHVEFIPTNETMPFHSSMKMTGTFDPHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTI  319 (563)
Q Consensus       243 ~~g~~-~g~~G~~P-~~~ve~~~~~~~~p~~~~~~~~~~~~~~~~~~w~~g~~sr~~A~~~l~~~-~~~G~FlvR~S~~~  319 (563)
                      |..+- ....++.. ...++...               ....++..+||||.|+|.+|+.+|... ..+|+||||.| +.
T Consensus       129 w~~~~~~~~~~~~~~~p~~~~~~---------------~~~~l~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S-~~  192 (254)
T 2oq1_A          129 WKLEGEALEQAIISQAPQVEKLI---------------ATTAHERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPR-KE  192 (254)
T ss_dssp             HCCCHHHHHHHHHHHHHHHHHHH---------------HHHGGGGSTTBCSSCCHHHHHHHHHSSCCCTTEEEEEEC-SS
T ss_pred             HhhcchhhhhhhccCCccccccc---------------cccccCCCcccccCCCHHHHHHHHHhcCCCCceEEEEec-CC
Confidence            31110 00111110 00111000               012334569999999999999999875 57899999999 78


Q ss_pred             CcceEEEEEeCCeeEEEEEeeecCCCcceeEEeC-CcccCChhhHHhhhhcccCCC-Ccccccccc
Q psy10852        320 LGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDLPSLLAFYKVHYLDT-SPLIKPATK  383 (563)
Q Consensus       320 ~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~-~~~f~sl~~lv~~y~~~~~~~-~~l~~P~~~  383 (563)
                      +|.|+||++.++.++||+|....++    .|.+. ...|+|+.+||+||+.+++.. +.|..|+++
T Consensus       193 ~g~~~LSv~~~~~v~H~~I~~~~~g----~~~~~~~~~F~sl~~LV~~y~~~~~~l~~~L~~p~~r  254 (254)
T 2oq1_A          193 QGTYALSLIYGKTVYHYLISQDKAG----KYCIPEGTKFDTLWQLVEYLKLKADGLIYCLKEACPN  254 (254)
T ss_dssp             TTEEEEEEEETTEEEEEEEEECTTS----CEESTTSCCBSSHHHHHHHHHHCCTTSSSCCCSBCCC
T ss_pred             CCCEEEEEEECCeEEEEEEEEcCCC----CEEECCCceECCHHHHHHHHHhCCCCCCeeCCccCcC
Confidence            9999999999999999999986544    27775 699999999999999888654 568888864

>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2 domain; HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1csy_A* 1csz_A*

Probab=100.00  E-value=5e-33  Score=270.51  Aligned_cols=244  Identities=26%  Similarity=0.417  Sum_probs=171.4

Q ss_pred             CCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeC-CceecCh
Q psy10852          8 HDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDL   85 (563)
Q Consensus         8 ~~~~~w~~g~i~r~~ae~~L~~-~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~sl   85 (563)
                      .+.++||||.|+|++||++|+. ...+|+||||+|++.+|.|+|||+.++.|+||+|.+..+|    .|.+. +..|.||
T Consensus         2 ~~~~~Wy~g~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g----~~~l~~~~~F~sl   77 (254)
T 1a81_A            2 ANHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERELNG----TYAIAGGRTHASP   77 (254)
T ss_dssp             TTSSTTBCSSCCHHHHHHHHHHTTCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTS----CEEETTSCCBSSH
T ss_pred             CccCccccCCCCHHHHHHHHhcCCCCCcEEEEEecCCCCCCEEEEEEECCeeEEEEEEEcCCC----CEEeCCCCCcCCH
Confidence            3567999999999999999975 3467999999999989999999999999999999986544    38885 6999999


Q ss_pred             HhhHHhhhcccCC-CccccccccccceeeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEeeCCCeeeEEecCcee
Q psy10852         86 PSLLAFYKVHYLD-TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ  164 (563)
Q Consensus        86 ~~Li~~y~~~~~~-~~~L~~p~~~~~~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~~~g~~G~fP~~yv~  164 (563)
                      .+||+||+.++.+ .+.|..||.++...          .                    .         ..|.|-     
T Consensus        78 ~eLv~~y~~~~~~l~~~L~~p~~~~~~~----------~--------------------~---------~~~~~~-----  113 (254)
T 1a81_A           78 ADLCHYHSQESDGLVCLLKKPFNRPQGV----------Q--------------------P---------KTGPFE-----  113 (254)
T ss_dssp             HHHHHHHTTCCTTSSSCCCEECCCCSSC----------C--------------------C---------CCCSSH-----
T ss_pred             HHHHHHHHhCCCCceECCccccCCCCCC----------C--------------------C---------ccchhc-----
Confidence            9999999998765 56678888762100          0                    0         000000     


Q ss_pred             ecccccccccccccccCCCCCCCCCCCCCccccccccccCccceeeeeccccCCCCCCceeeccCCEEEEeeecCCCcee
Q psy10852        165 KYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWE  244 (563)
Q Consensus       165 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~a~~~~eLsf~~Gd~v~V~~~~~~~W~~  244 (563)
                      .+.    ...                                    +..+                   |     ..+|.
T Consensus       114 ~i~----~~~------------------------------------l~~~-------------------v-----~~~w~  129 (254)
T 1a81_A          114 DLK----ENL------------------------------------IREY-------------------V-----KQTWN  129 (254)
T ss_dssp             HHH----HHH------------------------------------HHHH-------------------H-----HHHTC
T ss_pred             chH----HHH------------------------------------HHHH-------------------H-----HHHHH
Confidence            000    000                                    0000                   0     00121


Q ss_pred             ee-eCCceeecc-ccceeecCCCCCCCCCCCCCccCCCCCCCCCCccccccCHHHHHHHHhcC-CCCCcEEEEecCCCCc
Q psy10852        245 GE-LNGKTGHFP-FTHVEFIPTNETMPFHSSMKMTGTFDPHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILG  321 (563)
Q Consensus       245 g~-~~g~~G~~P-~~~ve~~~~~~~~p~~~~~~~~~~~~~~~~~~w~~g~~sr~~A~~~l~~~-~~~G~FlvR~S~~~~g  321 (563)
                      -. .....+... ..-++..               .....++..+||||.|+|.+|+.+|... ..+|+||||.| +.+|
T Consensus       130 ~~~~~l~~~~~~~~p~~~~~---------------~~~~~~~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S-~~~g  193 (254)
T 1a81_A          130 LQGQALEQAIISQKPQLEKL---------------IATTAHEKMPWFHGKISREESEQIVLIGSKTNGKFLIRAR-DNNG  193 (254)
T ss_dssp             CCHHHHHHHHHHHHHHHHHH---------------HHHTSGGGSTTEEEECCHHHHHHHHHSSCCCTTCEEEEEC-SSSS
T ss_pred             hccchhhhhcccCCchhhhc---------------ccccccccCCccccCCCHHHHHHHHHhcCCCCceEEEEec-CCCC
Confidence            10 000011110 0000000               0113345569999999999999999875 57899999999 7899


Q ss_pred             ceEEEEEeCCeeEEEEEeeecCCCcceeEEeC-CcccCChhhHHhhhhcccCCC-Ccccccccc
Q psy10852        322 NYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDLPSLLAFYKVHYLDT-SPLIKPATK  383 (563)
Q Consensus       322 ~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~-~~~f~sl~~lv~~y~~~~~~~-~~l~~P~~~  383 (563)
                      .|+||++.++.++||+|....++    .|.+. ...|+|+.+||+||+.+++.. +.|..|+++
T Consensus       194 ~~~LSv~~~~~v~H~~I~~~~~g----~~~l~~~~~F~sl~~LV~~y~~~~~~l~~~L~~p~~r  253 (254)
T 1a81_A          194 SYALCLLHEGKVLHYRIDKDKTG----KLSIPEGKKFDTLWQLVEHYSYKADGLLRVLTVPCQK  253 (254)
T ss_dssp             CEEEEEEETTEEEEEEEEECTTS----CEECTTSCCBSCHHHHHHHHTTCCTTSSSCCCCBCCC
T ss_pred             CEEEEEEECCEEEEEEEEEcCCC----CEEecCCcccCCHHHHHHHHHHCCCCCCeecCCcCCC
Confidence            99999999999999999986544    27775 699999999999999888654 568888875

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.97  E-value=9.8e-31  Score=288.20  Aligned_cols=247  Identities=27%  Similarity=0.431  Sum_probs=175.5

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEe-CCcee
Q psy10852          5 FDPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKI-GDKTF   82 (563)
Q Consensus         5 ~~~~~~~~w~~g~i~r~~ae~~L~~-~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~-~~~~F   82 (563)
                      .+.++.++||||.|+|++||++|.. ...+|+||||+|++.+|.|+|||+.++.|+||+|.+..++    .|.+ ++..|
T Consensus         7 ~~~l~~~~Wy~g~isr~~Ae~~L~~~~~~~G~FLvR~S~~~~g~y~lsv~~~~~v~h~~i~~~~~g----~~~~~~~~~f   82 (635)
T 4fl3_A            7 ADSANHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERELNG----TYAIAGGRTH   82 (635)
T ss_dssp             --CCTTCTTBCBSCCHHHHHHHHHHTTCCTTEEEEEECTTSSSCEEEEEEETTEEEEEEEEECTTS----CEESTTCCCB
T ss_pred             cchhhcCCccCCCCCHHHHHHHHhcCCCCCceEEEeecccCCCCEEEEEEeCCEEEeEEEEEcCCC----CEEeCCCCcc
Confidence            4688889999999999999999976 3456999999999999999999999999999999987655    3777 56899


Q ss_pred             cChHhhHHhhhcccCC-CccccccccccceeeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEeeCCCeeeEEecC
Q psy10852         83 SDLPSLLAFYKVHYLD-TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVP  161 (563)
Q Consensus        83 ~sl~~Li~~y~~~~~~-~~~L~~p~~~~~~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~~~g~~G~fP~~  161 (563)
                      .||.+||+||+.++++ .+.|.+||.+...          ..+.     .+.       ..+. |        .++|   
T Consensus        83 ~sl~~Lv~~y~~~~~~l~~~L~~p~~~~~~----------~~~~-----~~~-------~~~~-~--------~~~~---  128 (635)
T 4fl3_A           83 ASPADLCHYHSQESDGLVCLLKKPFNRPQG----------VQPK-----TGP-------FEDL-K--------ENLI---  128 (635)
T ss_dssp             SSHHHHHHHHTTCCTTSSSCCCEECCCCTT----------CCCB-----CSH-------HHHH-H--------HHHH---
T ss_pred             CCHHHHHHHHhhCCCCCeeccCCcCCCccC----------CCCC-----CCC-------cchh-h--------hHHH---
Confidence            9999999999999876 5678889876210          0000     000       0000 0        0000   


Q ss_pred             ceeecccccccccccccccCCCCCCCCCCCCCccccccccccCccceeeeeccccCCCCCCceeeccCCEEEEeeecCCC
Q psy10852        162 YVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNING  241 (563)
Q Consensus       162 yv~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~a~~~~eLsf~~Gd~v~V~~~~~~~  241 (563)
                                                                    ..+.                            .+
T Consensus       129 ----------------------------------------------~e~~----------------------------~~  134 (635)
T 4fl3_A          129 ----------------------------------------------REYV----------------------------KQ  134 (635)
T ss_dssp             ----------------------------------------------HHHH----------------------------HH
T ss_pred             ----------------------------------------------HHHH----------------------------HH
Confidence                                                          0000                            00


Q ss_pred             ceeee-eCCceeecccc-ceeecCCCCCCCCCCCCCccCCCCCCCCCCccccccCHHHHHHHHhcC-CCCCcEEEEecCC
Q psy10852        242 QWEGE-LNGKTGHFPFT-HVEFIPTNETMPFHSSMKMTGTFDPHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNT  318 (563)
Q Consensus       242 W~~g~-~~g~~G~~P~~-~ve~~~~~~~~p~~~~~~~~~~~~~~~~~~w~~g~~sr~~A~~~l~~~-~~~G~FlvR~S~~  318 (563)
                      .|... .....++.... -.+..               .....++..+||||.|+|.+|+.+|... +.+|+||||+| +
T Consensus       135 ~~~~~~~~~e~~i~~~~~~~~~~---------------~~~~~~~~~~Wy~g~isr~~ae~~L~~~~~~~G~FLvR~s-~  198 (635)
T 4fl3_A          135 TWNLQGQALEQAIISQKPQLEKL---------------IATTAHEKMPWFHGKISREESEQIVLIGSKTNGKFLIRAR-D  198 (635)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHHHH---------------HTTSCGGGSTTBCCSCCHHHHHHHHHSSSCCTTCEEEEES-S
T ss_pred             HHhcccchhhhhccCCCchhhhh---------------hcccccccCCceeccCCHHHHHHHHHcCCCCCceEEEEec-C
Confidence            00000 00001111100 00000               0124566779999999999999999874 56899999999 5


Q ss_pred             CCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeCC-cccCChhhHHhhhhcccCCC-Ccccccccc
Q psy10852        319 ILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD-KTFSDLPSLLAFYKVHYLDT-SPLIKPATK  383 (563)
Q Consensus       319 ~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~~-~~f~sl~~lv~~y~~~~~~~-~~l~~P~~~  383 (563)
                      .+|.|+||++.++.|+||+|....++    .|++.+ ..|+|+.+||+||+.+++.. +.|..|+++
T Consensus       199 ~~g~y~lsv~~~~~v~h~~i~~~~~g----~~~~~~~~~F~sl~~Lv~~y~~~~~~l~~~L~~p~~~  261 (635)
T 4fl3_A          199 NNGSYALCLLHEGKVLHYRIDKDKTG----KLSIPEGKKFDTLWQLVEHYSYKADGLLRVLTVPCQK  261 (635)
T ss_dssp             SSSCEEEEEEETTEEEEEEEEECTTS----CEESTTCCCBSSHHHHHHHHTTCCTTSSSCCCSBCCC
T ss_pred             CCCCEEEEEEECCEEEEEEEEECCCC----CEEeCCCCccCCHHHHHHHhhhCCCCCccccCccCcC
Confidence            68999999999999999999876544    388865 89999999999999988765 568899976

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.97  E-value=3.9e-30  Score=282.63  Aligned_cols=247  Identities=25%  Similarity=0.345  Sum_probs=171.9

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEe-CCceec
Q psy10852          6 DPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKI-GDKTFS   83 (563)
Q Consensus         6 ~~~~~~~w~~g~i~r~~ae~~L~~-~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~-~~~~F~   83 (563)
                      |+++.++||||.|+|++||++|.. ...+|+||||+|++.+|.|+|||+.+++|+||+|.+..++    +|.+ ++..|.
T Consensus         3 d~~~~~~W~~g~i~r~~ae~~L~~~~~~~G~fLvR~s~~~~g~~~ls~~~~~~~~h~~i~~~~~g----~~~~~~~~~f~   78 (613)
T 2ozo_A            3 DPAAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNG----TYAIAGGKAHC   78 (613)
T ss_dssp             CTTSSCTTBCBSCCHHHHHHHHHTTTCCTTEEEEEECTTBTTCEEEEEEETTEEEEEEEEECTTS----CEEETTSCCBS
T ss_pred             CCCCCCCCcCccCCHHHHHHHHhccCCCCCeEEEEecCCCCCCEEEEEEECCeEEEEEEEECCCC----cEEECCCCCcC
Confidence            567778999999999999999965 3456999999999989999999999999999999986554    3666 568999


Q ss_pred             ChHhhHHhhhcccCC-CccccccccccceeeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEeeCCCeeeEEecCc
Q psy10852         84 DLPSLLAFYKVHYLD-TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPY  162 (563)
Q Consensus        84 sl~~Li~~y~~~~~~-~~~L~~p~~~~~~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~~~g~~G~fP~~y  162 (563)
                      ||.+||+||+.++.+ .+.|+.||+++...          .+     ..++.                        -..+
T Consensus        79 sl~~Lv~~y~~~~~~l~~~L~~p~~~~~~~----------~~-----~~~~~------------------------~~~~  119 (613)
T 2ozo_A           79 GPAELCEFYSRDPDGLPCNLRKPCNRPSGL----------EP-----QPGVF------------------------DCLR  119 (613)
T ss_dssp             SHHHHHHHHTSCCTTSSSCCCSBCCCCTTC----------CC-----BCCHH------------------------HHHH
T ss_pred             CHHHHHHHHhhCCCCCCccCCccCCCCCCC----------CC-----Cccch------------------------hHHH
Confidence            999999999999865 56788999862100          00     00000                        0000


Q ss_pred             eeecccccccccccccccCCCCCCCCCCCCCccccccccccCccceeeeeccccCCCCCCceeeccCCEEEEeeecCCCc
Q psy10852        163 VQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQ  242 (563)
Q Consensus       163 v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~a~~~~eLsf~~Gd~v~V~~~~~~~W  242 (563)
                       +.+.    ...                                   +.                            +.|
T Consensus       120 -~~l~----~~~-----------------------------------~~----------------------------~~w  131 (613)
T 2ozo_A          120 -DAMV----RDY-----------------------------------VR----------------------------QTW  131 (613)
T ss_dssp             -HHHH----HHH-----------------------------------HH----------------------------HHH
T ss_pred             -HHHH----HHH-----------------------------------HH----------------------------HHh
Confidence             0000    000                                   00                            000


Q ss_pred             eeeeeCCceee-ccccceeecCCCCCCCCCCCCCccCCCCCCCCCCccccccCHHHHHHHHhcC-CCCCcEEEEecCCCC
Q psy10852        243 WEGELNGKTGH-FPFTHVEFIPTNETMPFHSSMKMTGTFDPHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTIL  320 (563)
Q Consensus       243 ~~g~~~g~~G~-~P~~~ve~~~~~~~~p~~~~~~~~~~~~~~~~~~w~~g~~sr~~A~~~l~~~-~~~G~FlvR~S~~~~  320 (563)
                      =.......... .+..-++.               ......++..+||||.|+|.+|+.+|... ..+|+||||.| +.+
T Consensus       132 e~~~~~l~~~~~~~~p~~~~---------------~~~~~~~~~~~wyhg~i~r~~ae~~L~~~~~~~G~FLvR~s-~~~  195 (613)
T 2ozo_A          132 KLEGEALEQAIISQAPQVEK---------------LIATTAHERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPR-KEQ  195 (613)
T ss_dssp             CCCHHHHHHHHHHHHHHHHH---------------HHTTSCTTTSTTBCTTCCHHHHHHHHSSSCCCTTCEEEEEC-SST
T ss_pred             hcCchHHHHHhhcCCCchhh---------------cccccccccCCccccCCCHHHHHHHHhhcCCCCceEEEEec-CCC
Confidence            00000000000 00000000               00123456679999999999999999874 57899999999 668


Q ss_pred             cceEEEEEeCCeeEEEEEeeecCCCcceeEEeC-CcccCChhhHHhhhhcccCCC-Ccccccccc
Q psy10852        321 GNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDLPSLLAFYKVHYLDT-SPLIKPATK  383 (563)
Q Consensus       321 g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~-~~~f~sl~~lv~~y~~~~~~~-~~l~~P~~~  383 (563)
                      |.|+||++.++.++||+|.+..++    .|++. ...|+|+.+||+||+.++... +.|..||+.
T Consensus       196 ~~~~lsv~~~~~v~h~~I~~~~~g----~~~~~~~~~F~sl~~Lv~~y~~~~~~l~~~L~~pC~~  256 (613)
T 2ozo_A          196 GTYALSLIYGKTVYHYLISQDKAG----KYCIPEGTKFDTLWQLVEYLKLKADGLIYCLKEACPN  256 (613)
T ss_dssp             TEEEEEEEETTEEEEEEEEECTTC----CEECTTSCEESSHHHHHHHHHHCCTTCSSCCCSBCCC
T ss_pred             CCEEEEEEECCeEEEEEEEECCCC----CEEECCCCCcCCHHHHHHHHhhCCCCceecccccccc
Confidence            999999999999999999976544    37876 689999999999999887765 457777754

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans}

Probab=99.97  E-value=1.5e-30  Score=238.79  Aligned_cols=160  Identities=37%  Similarity=0.716  Sum_probs=142.2

Q ss_pred             CCCCCCCCCccccccCHHHHHHHHhc-CCCCCcEEEEecCCCCcceEEEEEeCCe---eEEEEEee-ecCCCc---ceeE
Q psy10852        279 TFDPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNK---VSHYIINK-ITNTEQ---QTCY  350 (563)
Q Consensus       279 ~~~~~~~~~w~~g~~sr~~A~~~l~~-~~~~G~FlvR~S~~~~g~~~ls~~~~~~---v~h~~I~~-~~~~~~---~~~~  350 (563)
                      .+++++..+||||.|+|.+|+.+|.. ++.+|+||||.| +.++.|+||++.++.   ++||+|.. ....++   .. |
T Consensus         5 ~~~~l~~~~Wyhg~isR~~Ae~lL~~~~~~~G~FLVR~S-~~~g~y~LSv~~~~~~~~v~H~~I~~~~~~~~g~~~~~-~   82 (174)
T 3qwx_X            5 GFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDS-SRPGEYSLTVREADEGNAVCHYLIERGEPKEDGTAAAG-V   82 (174)
T ss_dssp             CSCGGGGGGGEETTCCHHHHHHHHHSTTCCTTEEEEEEC-SSTTCEEEEEECCSSSSCEEEEEEEECCCCTTSSSCCC-E
T ss_pred             ccCccccCCCccCCCCHHHHHHHHhccCCCCCeEEEEec-CCCCCEEEEEEECCCCCceEEEEEEeccCCCCCcccce-E
Confidence            35666778999999999999999988 566899999999 889999999999998   99999987 433222   22 8


Q ss_pred             EeCCcccCChhhHHhhhhcccCCCCcccccccc-ceeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCc
Q psy10852        351 KIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK-TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGE  429 (563)
Q Consensus       351 ~i~~~~f~sl~~lv~~y~~~~~~~~~l~~P~~~-~~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~  429 (563)
                      .+++..|+++.+||+||+.+++..++|..|+++ ....++|+|+|.++.++||+|++||+|.|+++.+++||.|++.+|+
T Consensus        83 ~~~~~~F~sl~eLv~~y~~~~~~~~~L~~P~~~p~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~  162 (174)
T 3qwx_X           83 KIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGT  162 (174)
T ss_dssp             EETTEEESSHHHHHHHTTSSCSSSCCCCEECCCCCSEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEECTTCC
T ss_pred             EECCeecCcHHHHhhhhhcCcccccccccccccccccEEEEecCcccCCCCccccccCCEEEEEEccCCCeEEEEECCCC
Confidence            888899999999999999998877888899877 5678999999999999999999999999999999999999867999


Q ss_pred             EEEEcCCCeEe
Q psy10852        430 VGSIPVPYVQK  440 (563)
Q Consensus       430 ~G~~P~~~v~~  440 (563)
                      .||||++||+.
T Consensus       163 ~G~~P~nyv~~  173 (174)
T 3qwx_X          163 TGLVPANYVQI  173 (174)
T ss_dssp             EEEEEGGGEEE
T ss_pred             EEEEChHHEEe
Confidence            99999999974

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A

Probab=99.97  E-value=2.8e-31  Score=254.22  Aligned_cols=160  Identities=53%  Similarity=0.962  Sum_probs=141.1

Q ss_pred             CCCCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCc--------------ce
Q psy10852        283 HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ--------------QT  348 (563)
Q Consensus       283 ~~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~--------------~~  348 (563)
                      ++...||||.|+|++|+.+|.. ..+|+||||+|++.+|.|+||++.++.++||+|.......+              . 
T Consensus        10 l~~~~WyhG~isR~eAe~lL~~-~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~g~~~~-   87 (230)
T 2dvj_A           10 EERSSWYWGRLSRQEAVALLQG-QRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVSPS-   87 (230)
T ss_dssp             SSSSSSCCSSCCTTHHHHHHTT-SSSSCBEEECCSSCTTSCEEECCCSSSCCCEECBCCCSCCSSSSSSSSTTTSCCCC-
T ss_pred             ccCCCcccCCCCHHHHHHHhcC-CCCceEEEEeCCCCCCCEEEEEEECCEEEEEEEEeCCCCcccccccccccccccce-
Confidence            3445999999999999999965 46799999999999999999999999999999998653210              1 


Q ss_pred             eEEeCCcccCChhhHHhhhhcccCCCCcccccccc------------ceeeEEEeecccCCCCCCCCCCCCCEEEEEEec
Q psy10852        349 CYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK------------TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD  416 (563)
Q Consensus       349 ~~~i~~~~f~sl~~lv~~y~~~~~~~~~l~~P~~~------------~~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~  416 (563)
                      .|.+++..|+||.+||+||+.+.++.+.|..|+++            ....++|+|+|.++.++||+|++||+|.|+.+.
T Consensus        88 ~~~~~~~~F~sl~~LV~~y~~~~l~~~~L~~Pv~~~~~~s~~~L~~~~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~  167 (230)
T 2dvj_A           88 RLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKP  167 (230)
T ss_dssp             CEESSSCEESSHHHHHTTSTTTCSSSSCCCCBCCSCCCCCCCCCSCCCCCCCBCCSCCCCSSSSSCCCCSSCBCCCCBCS
T ss_pred             EEEeCCceeCCHHHHHHHHhhCccccccccccccccccccccccCcccceeEEEeeeecCCCCCCccCcCCCEEEEEEcc
Confidence            27888899999999999999999888888888874            234689999999999999999999999999999


Q ss_pred             CCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        417 EEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       417 ~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      +++||.|++.+|+.||||++||+.+...
T Consensus       168 ~~~Ww~g~~~~g~~G~~P~~yv~~~~~~  195 (230)
T 2dvj_A          168 EEQWWNAEDSEGKRGMIPVPYVEKYRPA  195 (230)
T ss_dssp             CSSEEEEECTTSCEEEEEGGGSCCCCSS
T ss_pred             CCCcEEEEeCCCCEEEEehHHeEEcCCC
Confidence            9999999878999999999999988765

>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP, hydrolase, signaling protein; 3.10A {Homo sapiens}

Probab=99.97  E-value=8.1e-30  Score=277.51  Aligned_cols=197  Identities=25%  Similarity=0.473  Sum_probs=152.5

Q ss_pred             CCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEe-CCceecChHhhH
Q psy10852         11 NSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKI-GDKTFSDLPSLL   89 (563)
Q Consensus        11 ~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~-~~~~F~sl~~Li   89 (563)
                      ++||||.|+|++||++|...+.+|+||||+|++.+|.|+|||+.++.|+||+|...++.     |.+ ++..|.||.+||
T Consensus         2 ~~Wy~g~isr~~Ae~lL~~~~~~G~FLvR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~-----~~~~~~~~F~sl~eLv   76 (595)
T 3ps5_A            2 VRWFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDF-----YDLYGGEKFATLTELV   76 (595)
T ss_dssp             CSCCCSSCCHHHHHHHHHHHCCTTCEEEEECSSSTTSEEEEEEETTEEEEEEEEECSSC-----EESSSSCCBSSHHHHH
T ss_pred             CCccCCCCCHHHHHHHHhhCCCCCEEEEeecCCCCCceEEEEEECCEEEEEEEEeCCCc-----EEEecCccccchhhhh
Confidence            68999999999999999875457999999999999999999999999999999865433     655 568999999999


Q ss_pred             HhhhcccCCCccccccccccceeeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEeeCCCeeeEEecCceeecccc
Q psy10852         90 AFYKVHYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  169 (563)
Q Consensus        90 ~~y~~~~~~~~~L~~p~~~~~~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~~~g~~G~fP~~yv~~~~~~  169 (563)
                      +||+.+++....-                            .|.                       .++..|       
T Consensus        77 ~~y~~~~~~l~~~----------------------------~g~-----------------------~i~L~~-------   98 (595)
T 3ps5_A           77 EYYTQQQGVLQDR----------------------------DGT-----------------------IIHLKY-------   98 (595)
T ss_dssp             HHHHTTSSCCBCS----------------------------SCC-----------------------BCCCCC-------
T ss_pred             hhhccCccccccc----------------------------ccc-----------------------cccccc-------
Confidence            9999875411100                            000                       000000       


Q ss_pred             cccccccccccCCCCCCCCCCCCCccccccccccCccceeeeeccccCCCCCCceeeccCCEEEEeeecCCCceeeeeCC
Q psy10852        170 MSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNG  249 (563)
Q Consensus       170 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~a~~~~eLsf~~Gd~v~V~~~~~~~W~~g~~~g  249 (563)
                                                                                                      
T Consensus        99 --------------------------------------------------------------------------------   98 (595)
T 3ps5_A           99 --------------------------------------------------------------------------------   98 (595)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeccccceeecCCCCCCCCCCCCCccCCCCCCCCCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEe
Q psy10852        250 KTGHFPFTHVEFIPTNETMPFHSSMKMTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKE  329 (563)
Q Consensus       250 ~~G~~P~~~ve~~~~~~~~p~~~~~~~~~~~~~~~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~  329 (563)
                           |.++                      .......||+|.++|.+|+.+|.....+|+||||+|++.+|+|+||++.
T Consensus        99 -----P~~~----------------------~~p~~~~Wy~g~~~r~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~  151 (595)
T 3ps5_A           99 -----PLNC----------------------SDPTSERWYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLS  151 (595)
T ss_dssp             -----BCCC----------------------CCSCCSTTEEESCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEE
T ss_pred             -----cccc----------------------ccccccccccccCCHHHHHHHHhccCCCceEEEEecCCCCCcEEEEEEE
Confidence                 0000                      0011238999999999999999876678999999999999999999999


Q ss_pred             CC---------eeEEEEEeeecCCCcceeEEeCC-cccCChhhHHhhhhcccCCC-----Cccccccc
Q psy10852        330 NN---------KVSHYIINKITNTEQQTCYKIGD-KTFSDLPSLLAFYKVHYLDT-----SPLIKPAT  382 (563)
Q Consensus       330 ~~---------~v~h~~I~~~~~~~~~~~~~i~~-~~f~sl~~lv~~y~~~~~~~-----~~l~~P~~  382 (563)
                      .+         .|+|++|...+..     |++++ ..|+||.+||+||+.+++..     +.|..|+.
T Consensus       152 ~~~~~~~~~~~~v~H~~I~~~~~~-----~~~~~~~~F~sl~~LV~~y~~~~l~~~~g~~~~L~~p~~  214 (595)
T 3ps5_A          152 DQPKAGPGSPLRVTHIKVMCEGGR-----YTVGGLETFDSLTDLVEHFKKTGIEEASGAFVYLRQPYY  214 (595)
T ss_dssp             EEESSSTTSCEEEEEEEEBCGGGC-----BBSSSSCCBSSHHHHHHHHHHSCBCCTTSCCBCCCEECC
T ss_pred             CCccccccCCCceEEEEEEEeCCE-----EEEcCCcCCCCHHHHHHHHhcCCccccCCcEEEeecccc
Confidence            87         8999999874332     88875 89999999999999876643     45666764

>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2 protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2 d.93.1.1 d.93.1.1

Probab=99.96  E-value=7.1e-29  Score=266.82  Aligned_cols=201  Identities=28%  Similarity=0.535  Sum_probs=154.9

Q ss_pred             CCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEe-CCceecChH
Q psy10852          8 HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKI-GDKTFSDLP   86 (563)
Q Consensus         8 ~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~-~~~~F~sl~   86 (563)
                      ++.++||||.|+|++||++|+....+|+||||+|++.+|.|+||++.++.|+||+|...+.     .|.+ ++..|.||.
T Consensus         1 l~~~~Wyhg~i~r~~Ae~lL~~~~~~G~FLvR~S~~~~g~~~Lsv~~~~~v~H~~I~~~~~-----~~~l~~~~~F~sl~   75 (525)
T 2shp_A            1 MKSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTGD-----YYDLYGGEKFATLA   75 (525)
T ss_dssp             -CCSTTBCSSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEECSSS-----CEEETTSCEESSHH
T ss_pred             CCCCCcccCCCCHHHHHHHHHhCCCCCcEEeeccCCCCCcEEEEEEECCEEEEEEEEecCC-----eEEECCCCeECCHH
Confidence            3567999999999999999977446799999999998999999999999999999986432     2777 468999999


Q ss_pred             hhHHhhhcccCCCccccccccccceeeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEeeCCCeeeEEecCceeec
Q psy10852         87 SLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY  166 (563)
Q Consensus        87 ~Li~~y~~~~~~~~~L~~p~~~~~~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~~~g~~G~fP~~yv~~~  166 (563)
                      +||+||+.+++.   |.                         .+.|..+.+.                   .|      +
T Consensus        76 eLv~~y~~~~~~---l~-------------------------~~~g~~i~L~-------------------~P------v  102 (525)
T 2shp_A           76 ELVQYYMEHHGQ---LK-------------------------EKNGDVIELK-------------------YP------L  102 (525)
T ss_dssp             HHHHHHHTCTTC---SB-------------------------SSSSCBCCCC-------------------EE------C
T ss_pred             HHHHHHHhCCcc---cc-------------------------cccccccccc-------------------cc------c
Confidence            999999987431   00                         0001000000                   00      0


Q ss_pred             ccccccccccccccCCCCCCCCCCCCCccccccccccCccceeeeeccccCCCCCCceeeccCCEEEEeeecCCCceeee
Q psy10852        167 SEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGE  246 (563)
Q Consensus       167 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~a~~~~eLsf~~Gd~v~V~~~~~~~W~~g~  246 (563)
                      .                                                                               
T Consensus       103 ~-------------------------------------------------------------------------------  103 (525)
T 2shp_A          103 N-------------------------------------------------------------------------------  103 (525)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             c-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             eCCceeeccccceeecCCCCCCCCCCCCCccCCCCCCCCCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEE
Q psy10852        247 LNGKTGHFPFTHVEFIPTNETMPFHSSMKMTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLC  326 (563)
Q Consensus       247 ~~g~~G~~P~~~ve~~~~~~~~p~~~~~~~~~~~~~~~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls  326 (563)
                                 .                      .......||+|.++|.+|+.+|.....+|+||||.|++.+|.|+||
T Consensus       104 -----------~----------------------~dp~~~~w~~g~~~r~~Ae~lL~~~~~~G~FLVR~S~~~~g~y~LS  150 (525)
T 2shp_A          104 -----------C----------------------ADPTSERWFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLS  150 (525)
T ss_dssp             -----------C----------------------CCCTTCTTBCCSCCHHHHHHHHHHTCCTTEEEEEECSSSTTCEEEE
T ss_pred             -----------c----------------------cccccceeecccCCHHHHHHHHhccCCCceEEEEecCCCCCCEEEE
Confidence                       0                      0001238999999999999999886577999999999999999999


Q ss_pred             EEeCC----------eeEEEEEeeecCCCcceeEEeC-CcccCChhhHHhhhhcccCCC-----Ccccccccc
Q psy10852        327 VKENN----------KVSHYIINKITNTEQQTCYKIG-DKTFSDLPSLLAFYKVHYLDT-----SPLIKPATK  383 (563)
Q Consensus       327 ~~~~~----------~v~h~~I~~~~~~~~~~~~~i~-~~~f~sl~~lv~~y~~~~~~~-----~~l~~P~~~  383 (563)
                      ++..+          .++|++|.....     +|.++ ...|+++.+||+||+.+++..     ..|..|++.
T Consensus       151 v~~~~~~~~~~~~~~~v~H~~I~~~~g-----~~~l~~~~~F~sL~eLV~~y~~~~l~~~~g~~~~L~~P~~~  218 (525)
T 2shp_A          151 VRTGDDKGESNDGKSKVTHVMIRCQEL-----KYDVGGGERFDSLTDLVEHYKKNPMVETLGTVLQLKQPLNT  218 (525)
T ss_dssp             EEECC-----CCCCCEEEEEEEEEETT-----EEESSSSCCBSSHHHHHHHHHHSCCBCTTSCBCCCCEECCC
T ss_pred             EEECCccccccccccceEEEEEEecCC-----eEEECCCceeCcHHHHHHhhhccCccccCCeEEEeeccccc
Confidence            99987          899999988743     38887 589999999999999987532     456777654

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=99.96  E-value=1.9e-28  Score=233.62  Aligned_cols=156  Identities=26%  Similarity=0.544  Sum_probs=135.4

Q ss_pred             CCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeCCceecChHh
Q psy10852          8 HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPS   87 (563)
Q Consensus         8 ~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~sl~~   87 (563)
                      +...+||||.|+|++||.+|.....+|+||||.|++.+|.|+||++.++.|+||+|.+..++    .|.+....|.|+.+
T Consensus        55 ~~~~~w~~g~isr~~ae~lL~~~~~~G~fLvR~S~~~~g~~~LSv~~~~~v~h~~I~~~~~g----~~~~~~~~f~sl~e  130 (217)
T 1gri_A           55 MKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAG----KYFLWVVKFNSLNE  130 (217)
T ss_dssp             CCCCSSBCTTCCHHHHHHHHHTCSSTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEECSSS----CEESSSCEESSHHH
T ss_pred             cccchhhcccCCHHHHHHHHhccCCCceEEEEccCCCCCCEEEEEEECCEEEEEEEEEcCCC----CEEEeeeEcCCHHH
Confidence            45679999999999999999666667999999999989999999999999999999987655    48888899999999


Q ss_pred             hHHhhhcccCCCcc---ccc--cccccceeeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEeeCCCeeeEEecCc
Q psy10852         88 LLAFYKVHYLDTSP---LIK--PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPY  162 (563)
Q Consensus        88 Li~~y~~~~~~~~~---L~~--p~~~~~~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~~~g~~G~fP~~y  162 (563)
                      ||+||+.+++....   +..  |.+.....++|+|||.++.+++|+|++||+|.|+++.+++||.|+ .+|+.||||++|
T Consensus       131 Lv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~y~~~~~~eL~~~~Gd~i~v~~~~~~~W~~g~-~~g~~G~~P~~y  209 (217)
T 1gri_A          131 LVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGA-CHGQTGMFPRNY  209 (217)
T ss_dssp             HHHHHHHSCSSSSTTCCCCBCCCCCCCCCEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEE-CSSCEEEEEGGG
T ss_pred             HHHhhhccccccccceeecccccCCCCceEEEecCCccCCCCCcCCCCCCCEEEEEEeCCCCeEEEE-ECCeEEEEeHHH
Confidence            99999998775322   111  222345679999999999999999999999999999999999998 589999999999


Q ss_pred             eeeccc
Q psy10852        163 VQKYSE  168 (563)
Q Consensus       163 v~~~~~  168 (563)
                      |+.++.
T Consensus       210 v~~~~~  215 (217)
T 1gri_A          210 VTPVNR  215 (217)
T ss_dssp             EEEECC
T ss_pred             eEECCC
Confidence            998863

>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A*

Probab=99.96  E-value=1.3e-28  Score=265.09  Aligned_cols=191  Identities=25%  Similarity=0.450  Sum_probs=150.7

Q ss_pred             CCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEe-CCceecChHhhH
Q psy10852         11 NSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKI-GDKTFSDLPSLL   89 (563)
Q Consensus        11 ~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~-~~~~F~sl~~Li   89 (563)
                      ++||||.|+|++||++|.....+|+||||+|++.+|.|+|||+.++.|+||+|...+ +    .|.+ ++..|.||.+||
T Consensus         2 ~~Wyhg~i~r~~Ae~lL~~~~~~G~FLvR~S~~~~g~~~Lsv~~~~~v~H~~I~~~~-~----~~~~~~~~~F~sl~~Lv   76 (532)
T 2b3o_A            2 VRWFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSG-D----FYDLYGGEKFATLTELV   76 (532)
T ss_dssp             CTTBCSSCCHHHHHHHHHHHCCTTEEEEEECSSSSSEEEEEEEETTEEEEEEEECSS-S----CEEETTSCEESCHHHHH
T ss_pred             CCceeCCCCHHHHHHHHHhcCCCCCEEEecCCCCCCceEEEEEECCEEEEEEEEecC-C----EEEECCCcccCCHHHHH
Confidence            589999999999999998744579999999998899999999999999999998632 2    2777 568999999999


Q ss_pred             HhhhcccCC-------CccccccccccceeeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEeeCCCeeeEEecCc
Q psy10852         90 AFYKVHYLD-------TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPY  162 (563)
Q Consensus        90 ~~y~~~~~~-------~~~L~~p~~~~~~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~~~g~~G~fP~~y  162 (563)
                      +||+.+++.       .+.|+.|+.+                                                      
T Consensus        77 ~~y~~~~~~l~~~~g~~~~L~~P~~~------------------------------------------------------  102 (532)
T 2b3o_A           77 EYYTQQQGVLQDRDGTIIHLKYPLNC------------------------------------------------------  102 (532)
T ss_dssp             HHHHTTCSCBCCSSSCCBCCCEECCC------------------------------------------------------
T ss_pred             HHHHhcccccccccCchhhccccccc------------------------------------------------------
Confidence            999987520       0111111110                                                      


Q ss_pred             eeecccccccccccccccCCCCCCCCCCCCCccccccccccCccceeeeeccccCCCCCCceeeccCCEEEEeeecCCCc
Q psy10852        163 VQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQ  242 (563)
Q Consensus       163 v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~a~~~~eLsf~~Gd~v~V~~~~~~~W  242 (563)
                                                                                                      
T Consensus       103 --------------------------------------------------------------------------------  102 (532)
T 2b3o_A          103 --------------------------------------------------------------------------------  102 (532)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeeeeCCceeeccccceeecCCCCCCCCCCCCCccCCCCCCCCCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcc
Q psy10852        243 WEGELNGKTGHFPFTHVEFIPTNETMPFHSSMKMTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGN  322 (563)
Q Consensus       243 ~~g~~~g~~G~~P~~~ve~~~~~~~~p~~~~~~~~~~~~~~~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~  322 (563)
                                                            .......||||.++|.+|+.+|.....+|+||||.|++.+|.
T Consensus       103 --------------------------------------~~p~~~~w~~g~i~r~~Ae~lL~~~~~~G~FLVR~S~~~~g~  144 (532)
T 2b3o_A          103 --------------------------------------SDPTSERWYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGD  144 (532)
T ss_dssp             --------------------------------------CCGGGCTTBCTTCCHHHHHHHHHHHCCTTEEEEEECSSSTTC
T ss_pred             --------------------------------------cccccccccccccchHHHHHHHhcCCCCceEEEecCCCCCCc
Confidence                                                  000113899999999999999987556799999999999999


Q ss_pred             eEEEEEeCC---------eeEEEEEeeecCCCcceeEEeC-CcccCChhhHHhhhhcccCC---C--Ccccccccc
Q psy10852        323 YVLCVKENN---------KVSHYIINKITNTEQQTCYKIG-DKTFSDLPSLLAFYKVHYLD---T--SPLIKPATK  383 (563)
Q Consensus       323 ~~ls~~~~~---------~v~h~~I~~~~~~~~~~~~~i~-~~~f~sl~~lv~~y~~~~~~---~--~~l~~P~~~  383 (563)
                      |+|+++..+         .++|++|......     |.++ ...|+++.+||+||+.+++.   +  ..|..|++.
T Consensus       145 y~Lsv~~~~~~~~~~~~~~v~h~~I~~~~g~-----~~l~~~~~F~sl~eLV~~y~~~~l~~~~g~~~~L~~P~~~  215 (532)
T 2b3o_A          145 FVLSVLSDQPKAGPGSPLRVTHIKVMCEGGR-----YTVGGLETFDSLTDLVEHFKKTGIEEASGAFVYLRQPYYA  215 (532)
T ss_dssp             EEEEEEEEEEC----CCEEEEEEEEBCCTTS-----BBSSSSCCBSSHHHHHHHHHHHCEECSSSCEECCCEECCC
T ss_pred             eEEEEEecCccccccCCCceEEEEEEEcCCc-----eeeCCCcccCcHHHHHhhccccCccccCCeeEeccccccc
Confidence            999999877         8999999886332     7786 58999999999999987542   1  345666643

>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A

Probab=99.95  E-value=2.1e-28  Score=246.56  Aligned_cols=97  Identities=29%  Similarity=0.516  Sum_probs=83.9

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCC-CcceEEEEEECCeEEEEEEEEecCCCcceEEEeCC-ceec
Q psy10852          6 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTI-LGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD-KTFS   83 (563)
Q Consensus         6 ~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~-~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~-~~F~   83 (563)
                      .+++.++||||.|+|++||.+|... .+|+||||+|++. +|.|+|||+.++.|+||+|....++     |.+.+ ..|+
T Consensus         5 ~sL~~~~WYhG~IsR~eAE~lL~~~-~dG~FLVR~S~s~~~g~y~LSvr~~~~v~H~rI~~~~g~-----y~l~~~~~F~   78 (373)
T 3hhm_B            5 MSLQNAEWYWGDISREEVNEKLRDT-ADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGK-----YGFSDPLTFS   78 (373)
T ss_dssp             CGGGGCTTEEESCCHHHHHHHTTTC-CTTEEEEEECSCC--CCEEEEEEETTEEEEEEECCSSSC-----BCSSSSCCBS
T ss_pred             CCcccCCccCCCCCHHHHHHHhcCC-CCCCEEEeccCCCCCCCEEEEEEECCeeEEEEEEecCCe-----EEeCCCCCcC
Confidence            4677889999999999999999864 5699999999997 8999999999999999999975432     77765 8999


Q ss_pred             ChHhhHHhhhcccCC------Cccccccccc
Q psy10852         84 DLPSLLAFYKVHYLD------TSPLIKPATK  108 (563)
Q Consensus        84 sl~~Li~~y~~~~~~------~~~L~~p~~~  108 (563)
                      ||.+||+||+.+++.      .+.|..||.+
T Consensus        79 SL~eLV~~Y~~~~l~~~~~gl~~~L~~Pv~r  109 (373)
T 3hhm_B           79 SVVELINHYRNESLAQYNPKLDVKLLYPVSK  109 (373)
T ss_dssp             SSHHHHHHHHHSCGGGSCTTCCCCCCEECCS
T ss_pred             CHHHHHHHHhhCCccccCCCCCcccCCCCCC
Confidence            999999999999852      5778899987

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A*

Probab=99.94  E-value=2.7e-26  Score=210.58  Aligned_cols=154  Identities=29%  Similarity=0.577  Sum_probs=132.4

Q ss_pred             ceeeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEee-CCCeeeEEecCceeecccccccccccccccCCCCCCCC
Q psy10852        110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVP  188 (563)
Q Consensus       110 ~~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~-~~g~~G~fP~~yv~~~~~~~~~~~~~~~~~~g~~~~~~  188 (563)
                      ...++|+|||.+++++||+|++||+|.|+++ +++||.+++ .+|+.|+||++||++...                    
T Consensus        12 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~~g~~G~vP~~yv~~~~~--------------------   70 (175)
T 4d8k_A           12 DNLVIALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPFNFVAKANS--------------------   70 (175)
T ss_dssp             -CEEEESSCBCCCSSSBCCBCTTCEEEEEEC-CSSEEEEEETTTCCEEEEEGGGEEETTC--------------------
T ss_pred             CcEEEEccCcCCcCCcccccccCCEEEEEcc-CCCEEEEEECCCCceeeecccccccccc--------------------
Confidence            4579999999999999999999999999999 689999997 388999999999986631                    


Q ss_pred             CCCCCccccccccccCccceeeeeccccCCCCCCceeeccCCEEEEeeecCCCceeeeeCCceeeccccceeecCCCCCC
Q psy10852        189 QQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETM  268 (563)
Q Consensus       189 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~a~~~~eLsf~~Gd~v~V~~~~~~~W~~g~~~g~~G~~P~~~ve~~~~~~~~  268 (563)
                                                                                                      
T Consensus        71 --------------------------------------------------------------------------------   70 (175)
T 4d8k_A           71 --------------------------------------------------------------------------------   70 (175)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCccCCCCCCCCCCccccccCHHHHHHHHhcC-CCCCcEEEEecCCCCcceEEEEEe-----CCeeEEEEEeeec
Q psy10852        269 PFHSSMKMTGTFDPHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKIT  342 (563)
Q Consensus       269 p~~~~~~~~~~~~~~~~~~w~~g~~sr~~A~~~l~~~-~~~G~FlvR~S~~~~g~~~ls~~~-----~~~v~h~~I~~~~  342 (563)
                                    .+...||||.++|.+|+.+|... ..+|+||||.|++.++.|+||++.     ++.++||+|....
T Consensus        71 --------------l~~~~w~~g~isr~~ae~lL~~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~~v~H~~I~~~~  136 (175)
T 4d8k_A           71 --------------LEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLD  136 (175)
T ss_dssp             --------------STTCTTBCSSCCHHHHHHHHHSTTCCTTCEEEEECSSSTTCEEEEEEEECTTSCEEEEEEEEEECS
T ss_pred             --------------ccccceecCcccHHHHHHHHhcCCCCCCEEEEEECCCCCCeEEEEEEeCcccCCCceEEEEEEECC
Confidence                          01238999999999999999874 568999999999999999999998     7799999998765


Q ss_pred             CCCcceeEEeCC-cccCChhhHHhhhhcccCCC-Cccccccc
Q psy10852        343 NTEQQTCYKIGD-KTFSDLPSLLAFYKVHYLDT-SPLIKPAT  382 (563)
Q Consensus       343 ~~~~~~~~~i~~-~~f~sl~~lv~~y~~~~~~~-~~l~~P~~  382 (563)
                      ++    .|++.. ..|+||.+||+||+.++... +.|..||+
T Consensus       137 ~g----~~~~~~~~~F~sl~~LV~~y~~~~~gl~~~L~~Pc~  174 (175)
T 4d8k_A          137 NG----GFYISPRITFPGLHELVRHYTNASDGLCTRLSRPCQ  174 (175)
T ss_dssp             SS----CEESSTTSEESSHHHHHHHHHHCCTTSSSCCCSBCC
T ss_pred             CC----CEEECCCCccCCHHHHHHHHhhCCCCCcccCCCcCC
Confidence            43    277865 89999999999999988665 56888886

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B

Probab=99.92  E-value=1.8e-25  Score=207.99  Aligned_cols=130  Identities=18%  Similarity=0.289  Sum_probs=109.8

Q ss_pred             ceeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCCcccccccccCCCCCCCCCC
Q psy10852        384 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVP  463 (563)
Q Consensus       384 ~~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  463 (563)
                      ....|+|+|+|.+..++||+|.+||+|.|+.+.++|||+|+ .+|+.||||++||+.+.......+           .  
T Consensus        10 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~~~~~~~-----------~--   75 (193)
T 1ng2_A           10 ILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQ-MKAKRGWIPASFLEPLDSPDETED-----------P--   75 (193)
T ss_dssp             CCEEEECSSCBCCSSTTCCCBCTTCEEEEEECCTTSCCEEE-ECCCCCCCCGGGCCCSSCSSCSCC-----------C--
T ss_pred             cCcEEEEcCCcCCCCCCcCCCCCCCEEEEEEecCCCeEEEE-ECCeeeEechheEEeeccccccch-----------h--
Confidence            45689999999999999999999999999999999999998 799999999999998765411000           0  


Q ss_pred             CCCCCcccccccccccccceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCC
Q psy10852        464 QQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~  540 (563)
                                 ........++|+++|.  +.+++||+|++||+|.|+.+.++|||+|+++|+.||||++||+.+.+.
T Consensus        76 -----------~p~~~~~~~~al~dy~--a~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~  139 (193)
T 1ng2_A           76 -----------EPNYAGEPYVAIKAYT--AVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQD  139 (193)
T ss_dssp             -----------CCCTTCEEEEESSCBC--CCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEETTSC
T ss_pred             -----------hccccceeeeeccccC--CCCCCcccccCCCEEEEEEecCCCeEEEEECCCEEEEehHHeEECCCC
Confidence                       0011234688999998  556889999999999999998999999999999999999999999764

>2eo3_A CRK-like protein; phosphorylation, repeat, SH2 domain, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.91  E-value=3.8e-24  Score=180.14  Aligned_cols=101  Identities=56%  Similarity=1.000  Sum_probs=91.0

Q ss_pred             CCCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeCCcee
Q psy10852          3 GTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTF   82 (563)
Q Consensus         3 ~~~~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F   82 (563)
                      ++++.++.++||||.|+|++||++|+. ..+|+||||+|++.+|.|+|||+.++.|+||+|.+..++    .|.+++..|
T Consensus        11 ~n~v~~~~~~Wyhg~isR~~Ae~lL~~-~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g----~~~l~~~~F   85 (111)
T 2eo3_A           11 ARFDSSDRSAWYMGPVSRQEAQTRLQG-QRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNR----RFKIGDQEF   85 (111)
T ss_dssp             CCCCTTCHHHHEEESCCHHHHHHHHSS-CCTTCEEEEECSSSSSCEEEEEEETTEEEEEEEEEETTT----EEEETTCCB
T ss_pred             ccccccCCCCcccCCCCHHHHHHHhcC-CCCceEEEEeecCCCCCEEEEEEeCCeEEEEEEEEcCCC----CEEECCccc
Confidence            456788889999999999999999975 456999999999889999999999999999999986655    488988999


Q ss_pred             cChHhhHHhhhcccCCCccccccccc
Q psy10852         83 SDLPSLLAFYKVHYLDTSPLIKPATK  108 (563)
Q Consensus        83 ~sl~~Li~~y~~~~~~~~~L~~p~~~  108 (563)
                      .||.+||+||+.+++..+.|+.||++
T Consensus        86 ~sl~~LV~~y~~~~l~~~~L~~Pv~r  111 (111)
T 2eo3_A           86 DHLPALLEFYKIHYLDTTTLIEPAPR  111 (111)
T ss_dssp             SSHHHHHHHHTTSCSSSSCCCCBCCC
T ss_pred             CCHHHHHHHHhhCCCCCccCCCcCcC
Confidence            99999999999999988899999874

>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine kinase, signal transduction, peptide recognition, signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1 PDB: 1d1z_A 1d4w_A* 1m27_A*

Probab=99.90  E-value=1.1e-23  Score=175.44  Aligned_cols=97  Identities=24%  Similarity=0.478  Sum_probs=83.9

Q ss_pred             CCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeC------Cce
Q psy10852          8 HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG------DKT   81 (563)
Q Consensus         8 ~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~------~~~   81 (563)
                      ++.++||||.|+|++||++|+....+|+||||+|++.+|.|+|||+.++.|+||+|.+..++    .|.++      ...
T Consensus         1 l~~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g----~~~l~~~~g~~~~~   76 (104)
T 1d4t_A            1 MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETG----SWSAETAPGVHKRY   76 (104)
T ss_dssp             CTTCTTBCCSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTS----CEEECBCTTSCCCC
T ss_pred             CCCCceEccCCCHHHHHHHHHhcCCCCEEEEeeCCCCCCCEEEEEEECCeEEEEEEEECCCC----eEEEeccCCCCCcc
Confidence            46789999999999999999864357999999999889999999999999999999986544    38886      589


Q ss_pred             ecChHhhHHhhhcccCC-Cccccccccc
Q psy10852         82 FSDLPSLLAFYKVHYLD-TSPLIKPATK  108 (563)
Q Consensus        82 F~sl~~Li~~y~~~~~~-~~~L~~p~~~  108 (563)
                      |.||.+||+||+.++.+ .+.|..||++
T Consensus        77 F~sl~~LV~~y~~~~~~l~~~L~~P~~r  104 (104)
T 1d4t_A           77 FRKIKNLISAFQKPDQGIVIPLQYPVEK  104 (104)
T ss_dssp             BSSHHHHHHHHTSSSSSSSSCCCEECCC
T ss_pred             cCCHHHHHHHHhhCCCCCeEECCCcCCC
Confidence            99999999999998775 5677888764

>2gsb_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.89  E-value=1.1e-23  Score=179.50  Aligned_cols=102  Identities=24%  Similarity=0.501  Sum_probs=91.4

Q ss_pred             CCCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeCCcee
Q psy10852          3 GTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTF   82 (563)
Q Consensus         3 ~~~~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F   82 (563)
                      +..+.++.++||||.|+|++||++|+....+|+||||+|++.+|.|+|||+.++.|+||+|.+..++    .|.+++..|
T Consensus         8 ~~~~~l~~~~WyhG~isR~~Ae~lL~~~g~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g----~~~l~~~~F   83 (119)
T 2gsb_A            8 REEDPHEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQRFKICPTPNN----QFMMGGRYY   83 (119)
T ss_dssp             SCCCSGGGCSSBCCSSCHHHHHHHHHHTCCSSEEEEEECSSSTTCEEEEEECSSCBCCCCEEEETTT----EEEESSCCB
T ss_pred             CCCcccccCCcccCCCCHHHHHHHHhhcCCCCeEEEEeCCCCCCceEEEEEECCEEEEEEEEEcCCC----CEEECCccc
Confidence            4567889999999999999999999875456999999999889999999999999999999987655    488998999


Q ss_pred             cChHhhHHhhhcccCC-Cccccccccc
Q psy10852         83 SDLPSLLAFYKVHYLD-TSPLIKPATK  108 (563)
Q Consensus        83 ~sl~~Li~~y~~~~~~-~~~L~~p~~~  108 (563)
                      .||.+||+||+.+++. .+.|..||++
T Consensus        84 ~sl~~LI~~y~~~~l~~~~~L~~Pv~~  110 (119)
T 2gsb_A           84 NSIGDIIDHYRKEQIVEGYYLKEPVPM  110 (119)
T ss_dssp             SCHHHHHHHHTTSCSBTTBCCCCCCCC
T ss_pred             CCHHHHHHHHhhCccCCCCEeCCccCC
Confidence            9999999999999875 5678889887

>3us4_A Megakaryocyte-associated tyrosine-protein kinase; SH2 domain, signaling protein, structural genomics, joint CE structural genomics, JCSG; 1.50A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jwo_A

Probab=99.89  E-value=3.5e-23  Score=170.55  Aligned_cols=95  Identities=29%  Similarity=0.492  Sum_probs=83.3

Q ss_pred             CCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeC-CceecChH
Q psy10852          8 HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDLP   86 (563)
Q Consensus         8 ~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~sl~   86 (563)
                      ++.++||||.|+|++||++|+.. .+|+||||+|++.+|.|+|||+.++.|+||+|.+.+ +    .|.+. +..|.||.
T Consensus         2 L~~~~Wyhg~isr~~Ae~lL~~~-~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~-~----~~~~~~~~~F~sl~   75 (98)
T 3us4_A            2 LSLMPWFHGKISGQEAVQQLQPP-EDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRD-G----HLTIDEAVFFCNLM   75 (98)
T ss_dssp             CTTCTTBCCSCCHHHHHHHTCSC-CTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEEET-T----EEESSSSSEESSHH
T ss_pred             CccCcccCCCCCHHHHHHHccCC-CCcEEEEEeCCCCCCcEEEEEEECCceEEEEEEEeC-C----EEEECCCCccCCHH
Confidence            67789999999999999999864 569999999998899999999999999999999854 3    38886 58999999


Q ss_pred             hhHHhhhcccCC-Cccccccccc
Q psy10852         87 SLLAFYKVHYLD-TSPLIKPATK  108 (563)
Q Consensus        87 ~Li~~y~~~~~~-~~~L~~p~~~  108 (563)
                      +||+||+.++.+ .+.|..||++
T Consensus        76 ~Lv~~y~~~~~~l~~~L~~P~pk   98 (98)
T 3us4_A           76 DMVEHYSKDKGAICTKLVRPKRK   98 (98)
T ss_dssp             HHHHHHHHCCTTSSSCCCSBCCC
T ss_pred             HHHHHhhhCCCCCeEcCCccCCC
Confidence            999999999865 5678888863

>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens}

Probab=99.89  E-value=3e-23  Score=177.03  Aligned_cols=103  Identities=28%  Similarity=0.448  Sum_probs=89.6

Q ss_pred             CCCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeCC---
Q psy10852          3 GTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD---   79 (563)
Q Consensus         3 ~~~~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~---   79 (563)
                      .++..++.++||||.|+|++||++|+....+|+||||+|++.+|.|+|||+.++.|+||+|.+..++    .|.|.+   
T Consensus         2 ~~~~~~~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g----~~~l~~~~g   77 (119)
T 2ysx_A            2 SSGSSGMVPCWNHGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYRNCVYTYRILPNEDD----KFTVQASEG   77 (119)
T ss_dssp             CCCCSSCCCSSEEESCCHHHHHHHHHHHCCTTEEEEEECSSCTTSEEEEEECSSCEEEEEEEECTTS----CEEECCSCS
T ss_pred             CCccCCCCCccccCCCCHHHHHHHHhhcCCCCEEEEEeCCCCCCCEEEEEEECCEEEEEEEEEcCCC----CEEEeccCC
Confidence            3577889999999999999999999873456999999999889999999999999999999986544    388863   


Q ss_pred             ---ceecChHhhHHhhhcccCC-Ccccccccccc
Q psy10852         80 ---KTFSDLPSLLAFYKVHYLD-TSPLIKPATKT  109 (563)
Q Consensus        80 ---~~F~sl~~Li~~y~~~~~~-~~~L~~p~~~~  109 (563)
                         ..|.||.+||+||+.++++ .+.|+.||++.
T Consensus        78 ~~~~~F~sl~eLV~~y~~~~~~l~~~L~~P~~~~  111 (119)
T 2ysx_A           78 VSMRFFTKLDQLIEFYKKENMGLVTHLQYPVPLE  111 (119)
T ss_dssp             SSCCCBSSHHHHHHHTTSSSSSSSSCCCEECCCC
T ss_pred             cCCcccCCHHHHHHHHhhCCCCCCeECCCcCCCC
Confidence               6899999999999999876 56788888873

>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal transduction lymphocyte, signaling protein; HET: PTR; 2.15A {Mus musculus} SCOP: d.93.1.1

Probab=99.89  E-value=4.6e-23  Score=171.53  Aligned_cols=95  Identities=29%  Similarity=0.500  Sum_probs=81.7

Q ss_pred             CCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeC------Cceec
Q psy10852         10 RNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG------DKTFS   83 (563)
Q Consensus        10 ~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~------~~~F~   83 (563)
                      .++||||.|+|++||++|+....+|+||||+|++.+|.|+|||+.+++|+||+|.+..++    .|.++      ...|.
T Consensus         2 ~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g----~~~l~~~~g~~~~~F~   77 (103)
T 1i3z_A            2 DLPYYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHG----YYRIETDAHTPRTIFP   77 (103)
T ss_dssp             CCTTEESSCCHHHHHHHHHTTCSTTEEEEEECSSSTTCEEEEEECSSSEEEEEEEECTTS----CEEECBCTTSCCCEES
T ss_pred             CCccccCCCCHHHHHHHHhhcCCCceEEEEeCCCCCCCEEEEEEECCEEEEEEEEECCCC----eEEEeccCCCCCcccC
Confidence            468999999999999999874567999999999889999999999999999999986544    38886      48999


Q ss_pred             ChHhhHHhhhcccCC-Cccccccccc
Q psy10852         84 DLPSLLAFYKVHYLD-TSPLIKPATK  108 (563)
Q Consensus        84 sl~~Li~~y~~~~~~-~~~L~~p~~~  108 (563)
                      ||.+||+||+.++.+ .+.|..||++
T Consensus        78 sl~~LV~~y~~~~~~l~~~L~~P~~R  103 (103)
T 1i3z_A           78 NLQELVSKYGKPGQGLVVHLSNPIMR  103 (103)
T ss_dssp             SSHHHHHHTTSSSSSSSSCCCEECC-
T ss_pred             CHHHHHHHHhhCCCCCeEEcCCccCC
Confidence            999999999998765 5677788764

>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling protein; 1.65A {Homo sapiens} SCOP: d.93.1.1 PDB: 3m7f_A

Probab=99.89  E-value=5.2e-23  Score=171.75  Aligned_cols=100  Identities=26%  Similarity=0.497  Sum_probs=83.0

Q ss_pred             CCCCCccccCCCHHHHHHHHcCC-CCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeC--CceecC
Q psy10852          8 HDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG--DKTFSD   84 (563)
Q Consensus         8 ~~~~~w~~g~i~r~~ae~~L~~~-~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~--~~~F~s   84 (563)
                      |+.++||||.|+|++||++|+.. ..+|+||||+|++.+|.|+|||+.++.|+||+|.+...+ |...|.++  ...|.|
T Consensus         2 h~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~~-g~~~~~~~~~~~~F~s   80 (105)
T 1nrv_A            2 HRTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEDD-GQTFFSLDDGNTKFSD   80 (105)
T ss_dssp             CTTSTTBCTTCCHHHHHHHHHHTTCCTTEEEEEECSSCTTCEEEEEEETTEEEEEEEEEC------CCEESSTTSSCBSS
T ss_pred             CccCcccCCCCCHHHHHHHHHhcCCCCceEEEEeCCCCCCCEEEEEEeCCEEEEEEEEEEcCC-CCEEEEEcCCCcccCC
Confidence            67889999999999999999864 467999999999889999999999999999999986422 22237775  479999


Q ss_pred             hHhhHHhhhcccCC-Cccccccccc
Q psy10852         85 LPSLLAFYKVHYLD-TSPLIKPATK  108 (563)
Q Consensus        85 l~~Li~~y~~~~~~-~~~L~~p~~~  108 (563)
                      |.+||+||+.++++ .+.|..||++
T Consensus        81 l~~LV~~y~~~~~~l~~~L~~p~~r  105 (105)
T 1nrv_A           81 LIQLVDFYQLNKGVLPCKLKHHCIR  105 (105)
T ss_dssp             HHHHHHHHTTCCTTSSSCCCEECCC
T ss_pred             HHHHHHHhhhCCCCCcEeCCCcCCC
Confidence            99999999998765 6778888864

>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1ka7_A

Probab=99.89  E-value=3.8e-23  Score=178.57  Aligned_cols=98  Identities=23%  Similarity=0.473  Sum_probs=85.0

Q ss_pred             CCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeC------Cce
Q psy10852          8 HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG------DKT   81 (563)
Q Consensus         8 ~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~------~~~   81 (563)
                      ++.++||||.|+|++||++|+....+|+||||+|++.+|.|+|||+.++.|+||+|.+..+|    .|.++      ...
T Consensus         1 l~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g----~~~l~~~~g~~~~~   76 (128)
T 1ka6_A            1 MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETG----SWSAETAPGVHKRY   76 (128)
T ss_dssp             CCCCSSBCCSCCHHHHHHHHHHHCCTTCEEEEECSSSTTCEEEEEESSSCEEEEEEEECTTS----CEEEECSTTSCCCE
T ss_pred             CCCCcccCCCCCHHHHHHHHhcCCCCCEEEEeecCCCCCCEEEEEEeCCEEEEEEEEECCCC----eEEEeecCCCCCCc
Confidence            46789999999999999999754356999999999889999999999999999999986544    37775      589


Q ss_pred             ecChHhhHHhhhcccCC-Ccccccccccc
Q psy10852         82 FSDLPSLLAFYKVHYLD-TSPLIKPATKT  109 (563)
Q Consensus        82 F~sl~~Li~~y~~~~~~-~~~L~~p~~~~  109 (563)
                      |.||.+||+||+.++.+ .+.|..||.+.
T Consensus        77 F~sl~~LV~~y~~~~~gl~~~L~~P~~~~  105 (128)
T 1ka6_A           77 FRKIKNLISAFQKPDQGIVIPLQYPVEKK  105 (128)
T ss_dssp             ESSHHHHHHHTTSSCSSSSSCCCSBCCSS
T ss_pred             cCCHHHHHHHHhhCCCCCcEEcCCcCCCC
Confidence            99999999999998765 56788999874

>1lkk_A Human P56 tyrosine kinase; complex (tyrosine kinase/peptide); HET: PTR; 1.00A {Homo sapiens} SCOP: d.93.1.1 PDB: 1lcj_A* 1bhf_A* 1bhh_A 1lkl_A* 1bhh_B 1fbz_A* 1ijr_A* 1cwd_L* 1cwe_A*

Probab=99.89  E-value=7e-23  Score=171.11  Aligned_cols=97  Identities=28%  Similarity=0.567  Sum_probs=83.7

Q ss_pred             CCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEecCCCCcceEEEEEE-----CCeEEEEEEEEecCCCcceEEEeC-Cc
Q psy10852          8 HDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKITNTEQQTCYKIG-DK   80 (563)
Q Consensus         8 ~~~~~w~~g~i~r~~ae~~L~~-~~~~G~FLvR~s~~~~~~~~lsv~~-----~~~v~h~~I~~~~~~~~~~~~~~~-~~   80 (563)
                      ++.++||||.|+|++||++|+. ...+|+||||+|++.+|.|+|||+.     ++.|+||+|.+..++    .|.+. +.
T Consensus         1 l~~~~Wyhg~isR~~Ae~lL~~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~~~~~~v~H~~I~~~~~g----~~~l~~~~   76 (105)
T 1lkk_A            1 LEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNG----GFYISPRI   76 (105)
T ss_dssp             CCCCTTBCTTCCHHHHHHHHTSTTCCTTCEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEEECTTS----CEESSTTS
T ss_pred             CCcCceecCCCCHHHHHHHHHhcCCCCceEEEEECCCCCCcEEEEEEEcccCCCCcEEEEEEEECCCC----CEEECCCc
Confidence            4678999999999999999986 3567999999999889999999998     689999999987544    37785 58


Q ss_pred             eecChHhhHHhhhcccCC-Cccccccccc
Q psy10852         81 TFSDLPSLLAFYKVHYLD-TSPLIKPATK  108 (563)
Q Consensus        81 ~F~sl~~Li~~y~~~~~~-~~~L~~p~~~  108 (563)
                      .|.||.+||+||+.++.+ .+.|..||++
T Consensus        77 ~F~sl~~LI~~y~~~~~~l~~~L~~P~~~  105 (105)
T 1lkk_A           77 TFPGLHELVRHYTNASDGLCTRLSRPCQT  105 (105)
T ss_dssp             CBSSHHHHHHHHHHCCTTSSSCCCSBCCC
T ss_pred             eeCCHHHHHHHHhhCCCCCccCCcCcCCC
Confidence            999999999999998776 5778888863

>2ge9_A Tyrosine-protein kinase BTK; SH2 domain, structure, transferase; NMR {Homo sapiens}

Probab=99.88  E-value=6.3e-23  Score=176.32  Aligned_cols=104  Identities=29%  Similarity=0.521  Sum_probs=89.7

Q ss_pred             CCCCCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEE------CCeEEEEEEEEecCCCcceE
Q psy10852          1 MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKE------NNKVSHYIINKITNTEQQTC   74 (563)
Q Consensus         1 ~~~~~~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~------~~~v~h~~I~~~~~~~~~~~   74 (563)
                      |++..+.++.++||||.|+|++||++|+....+|+||||+| +.+|.|+|||+.      ++.|+||+|.+..+|    .
T Consensus         1 ~~~~~~~l~~~~WyhG~isR~eAe~lL~~~g~~G~FLVR~S-s~~g~y~LSv~~~~~~~~~~~v~H~~I~~~~~g----~   75 (125)
T 2ge9_A            1 MTEAEDSIEMYEWYSKHMTRSQAEQLLKQEGKEGGFIVRDS-SKAGKYTVSVFAKSTGDPQGVIRHYVVCSTPQS----Q   75 (125)
T ss_dssp             -CCCCCSSCCSSSEETTCCHHHHHHHHHHHTCTTEEEEEEC-SSSCCEEEEEEESSSSSTTCEEEEEECEEETTT----E
T ss_pred             CCccccccccCCccccCCCHHHHHHHHhhcCCCceEEEEec-CCCCCEEEEEEeccccCCCCeEEEEEEEEcCCC----C
Confidence            88888999999999999999999999987535799999999 458999999997      479999999987655    4


Q ss_pred             EEeC-CceecChHhhHHhhhcccCC-Ccccccccccc
Q psy10852         75 YKIG-DKTFSDLPSLLAFYKVHYLD-TSPLIKPATKT  109 (563)
Q Consensus        75 ~~~~-~~~F~sl~~Li~~y~~~~~~-~~~L~~p~~~~  109 (563)
                      |.+. +..|.||.+||+||+.++.+ .+.|..||++.
T Consensus        76 ~~l~~~~~F~sl~eLV~~y~~~~~~l~~~L~~P~~~~  112 (125)
T 2ge9_A           76 YYLAEKHLFSTIPELINYHQHNSAGLISRLKYPVSQQ  112 (125)
T ss_dssp             EESSTTSCBSSHHHHHHHHHCCCTTCSCCSSEECCSS
T ss_pred             EEECCCCcCCCHHHHHHHhhhCCCCCceeCCCccCCC
Confidence            8885 47999999999999998765 67788888873

>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6 (PTK6/BRK), SRC homology 2(S domain, solution structure, backbone dynamics, transferase; NMR {Homo sapiens} SCOP: d.93.1.1

Probab=99.88  E-value=5.9e-23  Score=169.69  Aligned_cols=95  Identities=32%  Similarity=0.566  Sum_probs=83.2

Q ss_pred             CCCccccCCCHHHHHHHHcCC-CCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeC-CceecChHh
Q psy10852         10 RNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDLPS   87 (563)
Q Consensus        10 ~~~w~~g~i~r~~ae~~L~~~-~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~sl~~   87 (563)
                      +++||||.|+|++||++|+.. ..+|+||||+|++.+|.|+|||+.++.|+||+|.+..+|    .|.+. +..|.||.+
T Consensus         1 ~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g----~~~l~~~~~F~sl~~   76 (100)
T 1rja_A            1 SEPWFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGG----RLHLNEAVSFLSLPE   76 (100)
T ss_dssp             CCCCBCTTCCHHHHHHHHSSTTCSSCCEEEEECSSSSSCEEEEECTTSSCEEEEEEECSSS----CEEEETTEEESSHHH
T ss_pred             CCCcccCCCCHHHHHHHHhccCCCCCEEEEEeCCCCCCCEEEEEEECCEEEEEEEEEcCCC----cEEECCCCccCCHHH
Confidence            468999999999999999873 456999999999888999999999999999999986544    36664 689999999


Q ss_pred             hHHhhhcccCC-Cccccccccc
Q psy10852         88 LLAFYKVHYLD-TSPLIKPATK  108 (563)
Q Consensus        88 Li~~y~~~~~~-~~~L~~p~~~  108 (563)
                      ||+||+.++++ .+.|+.||++
T Consensus        77 LV~~y~~~~~~l~~~L~~p~~~   98 (100)
T 1rja_A           77 LVNYHRAQSLSHGLRLAAPCRK   98 (100)
T ss_dssp             HHHHHHHCCTTSSSCCCSBCCC
T ss_pred             HHHHHhhCCCCCCCCCCccCCC
Confidence            99999999886 5778889876

>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain, phosphotyrosine binding, signaling protein, signaling protein-antagonist complex; HET: PTR; 1.60A {Homo sapiens} SCOP: d.93.1.1 PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A* 3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A* 2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A* 1fyr_A* ...

Probab=99.88  E-value=1e-22  Score=172.76  Aligned_cols=98  Identities=24%  Similarity=0.444  Sum_probs=84.5

Q ss_pred             CCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeCCceecChH
Q psy10852          7 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLP   86 (563)
Q Consensus         7 ~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~sl~   86 (563)
                      .++.++||||.|+|++||++|+....+|+||||+|++.+|.|+|||+.++.|+||+|.+..++    .|.+++..|.||.
T Consensus         2 ~L~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g----~~~l~~~~F~sl~   77 (117)
T 3ov1_A            2 EMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAG----KYFLWVVKFNSLN   77 (117)
T ss_dssp             -CCCCTTBCCSCCHHHHHHHHHTCCSTTBEEEEECSSSTTCEEEEEEETTEEEEEECEECTTS----CEESSSCEESSHH
T ss_pred             CcccCCcccCCCCHHHHHHHHhCCCCCCcEEEEeCCCCCCCEEEEEecCCceEEEEEEECCCC----eEEECCCCcCCHH
Confidence            367789999999999999999986667999999999889999999999999999999986554    4999889999999


Q ss_pred             hhHHhhhcccCC---Cccccccccc
Q psy10852         87 SLLAFYKVHYLD---TSPLIKPATK  108 (563)
Q Consensus        87 ~Li~~y~~~~~~---~~~L~~p~~~  108 (563)
                      +||+||+.+++.   ...|+.|++.
T Consensus        78 eLV~~y~~~~l~~~~~~~L~~~~~~  102 (117)
T 3ov1_A           78 ELVDYHRSTSVSRNQQIFLRDIEQV  102 (117)
T ss_dssp             HHHHHTTTSCSCSSSCCCCBCCCCC
T ss_pred             HHHHHHhhCCCCCCCceEecCCCcC
Confidence            999999999884   3445555544

>1ju5_A CRK; CRK, SH2, SH3, adaptor protein, phosphopeptide, protein binding/transferase complex; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1

Probab=99.88  E-value=6.4e-23  Score=172.12  Aligned_cols=96  Identities=53%  Similarity=0.945  Sum_probs=83.6

Q ss_pred             CccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCc-------------ceEEEeC
Q psy10852         12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ-------------QTCYKIG   78 (563)
Q Consensus        12 ~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~-------------~~~~~~~   78 (563)
                      +||||.|+|++||++|+. ..+|+||||+|++.+|.|+|||+.+++|+||+|.+.+.+++             ...|.++
T Consensus         1 ~Wyhg~isr~~Ae~lL~~-~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~g~~~~~~~~~~~g~~~~~~~l~   79 (109)
T 1ju5_A            1 SWYWGRLSRQEAVALLQG-QRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVSPSRLRIG   79 (109)
T ss_dssp             CCEETTCCHHHHHHHHTT-CCTTEEEEEECSSSTTEEEEEEECSSCEEEEEEECCSSSSCCCCCCSSCCTTCCCCCEEET
T ss_pred             CccccCCCHHHHHHHhcC-CCCCEEEEEecCCCCCCEEEEEEECCeEEEEEEEECCCCcccccccccccccccccEEEeC
Confidence            599999999999999976 45699999999988999999999999999999998653211             0138889


Q ss_pred             CceecChHhhHHhhhcccCCCccccccccc
Q psy10852         79 DKTFSDLPSLLAFYKVHYLDTSPLIKPATK  108 (563)
Q Consensus        79 ~~~F~sl~~Li~~y~~~~~~~~~L~~p~~~  108 (563)
                      +..|+||.+||+||+.+++..+.|+.||++
T Consensus        80 ~~~F~sl~~LV~~y~~~~l~~~~L~~Pv~r  109 (109)
T 1ju5_A           80 DQEFDSLPALLEFYKIHYLDTTTLIEPVSR  109 (109)
T ss_dssp             TEEESSHHHHHHHHHHSCSSSSCCCEESCC
T ss_pred             CcccCCHHHHHHHHhhCCCCCeecCccCCC
Confidence            999999999999999999988889999874

>1jyr_A Growth factor receptor-bound protein 2; receptor binding, regulatory, inhibitor, signaling protein-I complex; HET: PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A* 1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E* 1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A*

Probab=99.88  E-value=1.1e-22  Score=166.44  Aligned_cols=85  Identities=27%  Similarity=0.540  Sum_probs=77.0

Q ss_pred             CCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeCCceecChHhhH
Q psy10852         10 RNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLL   89 (563)
Q Consensus        10 ~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~sl~~Li   89 (563)
                      +++||||.|+|++||++|+..+.+|+||||+|++.+|.|+|||+.++.|+||+|.+..++    .|.+.+..|.||.+||
T Consensus         2 ~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g----~~~l~~~~F~sl~~LV   77 (96)
T 1jyr_A            2 SMAWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAG----KYFLWVVKFNSLNELV   77 (96)
T ss_dssp             CCTTBCCSCCHHHHHHHHHTCCSTTBEEEEECSSSTTCEEEEEEETTEEEEEECEECTTS----CEESSSCEESSHHHHH
T ss_pred             CcceeccCCCHHHHHHHHhcCCCCcEEEEEecCCCCCCEEEEEEeCCeEEEEEEEEcCCC----CEEECCcccCCHHHHH
Confidence            468999999999999999986547999999999889999999999999999999986544    4899889999999999


Q ss_pred             HhhhcccCC
Q psy10852         90 AFYKVHYLD   98 (563)
Q Consensus        90 ~~y~~~~~~   98 (563)
                      +||+.+++.
T Consensus        78 ~~y~~~~l~   86 (96)
T 1jyr_A           78 DYHRSTSVS   86 (96)
T ss_dssp             HHTTSSCSC
T ss_pred             HHHhhCCCC
Confidence            999999774

>2eob_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 2; SH2, phosphoinositide phospholipase C, PLC-gamma-2, phospholipase C-gamma-2; NMR {Rattus norvegicus}

Probab=99.88  E-value=1.3e-22  Score=174.14  Aligned_cols=99  Identities=29%  Similarity=0.569  Sum_probs=86.3

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeCCc-eec
Q psy10852          5 FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDK-TFS   83 (563)
Q Consensus         5 ~~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~-~F~   83 (563)
                      .+.++.++||||.|+|++||++|+..+.+|+||||+|+ .+|.|+|||+.++.|+||+|.+.+.     .|.+++. .|.
T Consensus        13 ~~~l~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~-~~g~y~LSv~~~~~v~H~~I~~~~~-----~~~~~~~~~F~   86 (124)
T 2eob_A           13 PNPHESKPWYYDRLSRGEAEDMLMRIPRDGAFLIRKRE-GTDSYAITFRARGKVKHCRINRDGR-----HFVLGTSAYFE   86 (124)
T ss_dssp             SCSTTTSTTEESSCCHHHHHHHHHHCCSSSEEEEECCT-TSSCEEEEEEETTEEEEEEEEESSS-----CEESSSSCCBS
T ss_pred             ccccCcCCCeecCCCHHHHHHHHhcCCCCCEEEEEecC-CCCCEEEEEEeCCeEEEEEEEECCC-----EEEECCCCcCC
Confidence            56788899999999999999999876557999999999 7999999999999999999997432     3888764 499


Q ss_pred             ChHhhHHhhhcccCC-Ccccccccccc
Q psy10852         84 DLPSLLAFYKVHYLD-TSPLIKPATKT  109 (563)
Q Consensus        84 sl~~Li~~y~~~~~~-~~~L~~p~~~~  109 (563)
                      ||.+||+||+.+++. .+.|+.||++.
T Consensus        87 sl~~LV~~y~~~~~~~~~~L~~P~~~~  113 (124)
T 2eob_A           87 SLVELVSYYEKHALYRKMRLRYPVTPE  113 (124)
T ss_dssp             SHHHHHHHHTTSCSSSSCCSCEECCHH
T ss_pred             CHHHHHHHHhhCCCCCCcCCCCcCCcH
Confidence            999999999999885 56788898873

>2dly_A FYN-related kinase; BRK family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.88  E-value=1.3e-22  Score=173.50  Aligned_cols=100  Identities=30%  Similarity=0.570  Sum_probs=86.9

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEe-CCceec
Q psy10852          6 DPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKI-GDKTFS   83 (563)
Q Consensus         6 ~~~~~~~w~~g~i~r~~ae~~L~~-~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~-~~~~F~   83 (563)
                      +.++.++||||.|+|++||++|+. ...+|+||||+|++.+|.|+|||+.++.|+||+|.+..++    .|.+ ++..|.
T Consensus        11 ~~l~~~~WyhG~isR~eAe~lL~~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g----~~~l~~~~~F~   86 (121)
T 2dly_A           11 RSLQAEPWFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLDEGVVKHYRIRRLDEG----GFFLTRRKVFS   86 (121)
T ss_dssp             GGGGGCSSBCSSCCHHHHHHHHTSSSCCTTCEEEEECSSSSSCEEEEEESSSCEEEEEEEECSSS----CEEEETTEEES
T ss_pred             cccCcCCccccCCCHHHHHHHHhcCCCCCCEEEEEcCCCCCCceEEEEEECCeEEEEEEEEcCCC----CEEECCCCccC
Confidence            567788999999999999999986 4567999999999889999999999999999999986544    2666 468999


Q ss_pred             ChHhhHHhhhcccCC-Ccccccccccc
Q psy10852         84 DLPSLLAFYKVHYLD-TSPLIKPATKT  109 (563)
Q Consensus        84 sl~~Li~~y~~~~~~-~~~L~~p~~~~  109 (563)
                      ||.+||+||+.++++ .+.|+.||.+.
T Consensus        87 sl~eLV~~y~~~~~~l~~~L~~P~~~~  113 (121)
T 2dly_A           87 TLNEFVNYYTTTSDGLCVKLEKPCLKI  113 (121)
T ss_dssp             SHHHHHHHHTTCCSSSSSCCCSBCCCC
T ss_pred             CHHHHHHHHhhCCCCCceeCCeecCCC
Confidence            999999999999876 57788998873

>3pqz_A Growth factor receptor-bound protein 7; SH2, binds phosphotyrosine, tyrosine kinases, cytoplasmic, P binding; 2.41A {Homo sapiens} PDB: 1mw4_A* 2l4k_A* 2qms_A

Probab=99.88  E-value=1.5e-22  Score=172.65  Aligned_cols=104  Identities=25%  Similarity=0.406  Sum_probs=85.5

Q ss_pred             CCCCCCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeC--Cc
Q psy10852          4 TFDPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG--DK   80 (563)
Q Consensus         4 ~~~~~~~~~w~~g~i~r~~ae~~L~~-~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~--~~   80 (563)
                      ..+.++.++||||.|+|++||++|+. ...+|+||||+|++.+|.|+|||+.++.|+||+|.+...+ |.+.|.++  ..
T Consensus         7 ~~~~~~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~-g~~~~~~~~~~~   85 (117)
T 3pqz_A            7 SAAIHRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEE-GRLYFSMDDGQT   85 (117)
T ss_dssp             --CGGGGCTTBCCSCCHHHHHHHHHHTTCCTTEEEEEECCC-CCCEEEEEEETTEEEEEEEEEECCT-TCCEEESSTTSS
T ss_pred             ChhhcccCccccCCCCHHHHHHHHhcCCCCCCEEEEEecCCCCCcEEEEEEeCCeeEEEEEEEecCC-CCEEEEECCCCc
Confidence            35678889999999999999999986 3457999999999988999999999999999999986322 33335664  47


Q ss_pred             eecChHhhHHhhhcccCC-Cccccccccc
Q psy10852         81 TFSDLPSLLAFYKVHYLD-TSPLIKPATK  108 (563)
Q Consensus        81 ~F~sl~~Li~~y~~~~~~-~~~L~~p~~~  108 (563)
                      .|.||.+||+||+.++++ .+.|..||++
T Consensus        86 ~F~sl~~LV~~y~~~~~~l~~~L~~P~~~  114 (117)
T 3pqz_A           86 RFTDLLQLVEFHQLNRGILPCLLRHCCTR  114 (117)
T ss_dssp             CBSSHHHHHHHHHHCCTTSSSCCCEECC-
T ss_pred             ccCCHHHHHHHHhhCCCCCcEECCCcCcc
Confidence            999999999999999876 6788899876

>1blj_A P55 BLK protein tyrosine kinase; signal transduction, transferase, phosphotransferase, phosphorylation; NMR {Mus musculus} SCOP: d.93.1.1 PDB: 1blk_A

Probab=99.88  E-value=1.1e-22  Score=172.57  Aligned_cols=102  Identities=28%  Similarity=0.524  Sum_probs=88.2

Q ss_pred             CCCCCCCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEecCCCCcceEEEEEE----CCeEEEEEEEEecCCCcceEEEe
Q psy10852          3 GTFDPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKE----NNKVSHYIINKITNTEQQTCYKI   77 (563)
Q Consensus         3 ~~~~~~~~~~w~~g~i~r~~ae~~L~~-~~~~G~FLvR~s~~~~~~~~lsv~~----~~~v~h~~I~~~~~~~~~~~~~~   77 (563)
                      +..+.++.++||||.|+|++||++|+. ...+|+||||+|++.+|.|+|||+.    ++.|+||+|.+..++    .|.+
T Consensus         4 a~~~~l~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~v~H~~I~~~~~g----~~~l   79 (114)
T 1blj_A            4 APVETLEVEKWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEVVKHYKIRSLDNG----GYYI   79 (114)
T ss_dssp             CSSCCSCCSSSBCCSCCHHHHHHHHSSTTCCTTCEEBCBCTTCSSCEEEEECBCCTTTCBCCCEEEEEETTT----EEEE
T ss_pred             CccCccccCCccCCCCCHHHHHHHHhhCCCCCceEEEEeCCCCCCCEEEEEEEecCCCCcEEEEEEEEcCCC----CEEE
Confidence            346778899999999999999999986 3467999999999889999999998    689999999987554    3666


Q ss_pred             -CCceecChHhhHHhhhcccCC-Cccccccccc
Q psy10852         78 -GDKTFSDLPSLLAFYKVHYLD-TSPLIKPATK  108 (563)
Q Consensus        78 -~~~~F~sl~~Li~~y~~~~~~-~~~L~~p~~~  108 (563)
                       ++..|.||.+||+||+.++.+ .+.|..||++
T Consensus        80 ~~~~~F~sl~~LV~~y~~~~~~l~~~L~~p~~~  112 (114)
T 1blj_A           80 SPRITFPTLQALVQHYSKKGDGLCQKLTLPCVN  112 (114)
T ss_dssp             ETTEEESSHHHHHHHHHHCCSSSSSCCCCCSCC
T ss_pred             CCCcccCCHHHHHHHhhhCCCCCceecCccCCC
Confidence             468999999999999998775 5788889876

>3eaz_A Tyrosine-protein kinase CSK; SH2, disulfide, oxidized reduced, ATP-binding, cell membrane, cytoplasm, membrane, nucleotide-binding, phosphoprotein; 1.31A {Homo sapiens} PDB: 3eac_A

Probab=99.88  E-value=1.3e-22  Score=169.53  Aligned_cols=96  Identities=32%  Similarity=0.571  Sum_probs=84.5

Q ss_pred             CCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeC-CceecCh
Q psy10852          7 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDL   85 (563)
Q Consensus         7 ~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~sl   85 (563)
                      .++.++||||.|+|++||++|+.. .+|+||||+|++.+|.|+|||+.++.|+||+|.+.. +    .|.++ +..|.||
T Consensus         4 ~L~~~~Wyhg~isr~~Ae~lL~~~-~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~-g----~~~l~~~~~F~sl   77 (106)
T 3eaz_A            4 KLSLMPWFHGKITREQAERLLYPP-ETGLFLVRESTNYPGDYTLCVSSDGKVEHYRIMYHA-S----KLSIDEEVYFENL   77 (106)
T ss_dssp             TGGGCTTBCCSCCHHHHHHHTCSC-CTTEEEEEECTTSTTCEEEEEEETTEEEEEECEEET-T----EEESSSSSCBSSH
T ss_pred             ccccCCCcCCCCCHHHHHHHhCCC-CCCEEEEEECCCCCCcEEEEEEeCCceEEEEEEecC-C----EEEECCCCccCCH
Confidence            466789999999999999999864 569999999998899999999999999999999753 3    38886 5899999


Q ss_pred             HhhHHhhhcccCC-Cccccccccc
Q psy10852         86 PSLLAFYKVHYLD-TSPLIKPATK  108 (563)
Q Consensus        86 ~~Li~~y~~~~~~-~~~L~~p~~~  108 (563)
                      .+||+||+.++.+ .+.|..||++
T Consensus        78 ~~Lv~~y~~~~~gl~~~L~~P~~~  101 (106)
T 3eaz_A           78 MQLVEHYTSDADGLCTRLIKPKVM  101 (106)
T ss_dssp             HHHHHHHHHCCTTSSSCCCEECCC
T ss_pred             HHHHHHHhhCCCCCCeecCCcCCC
Confidence            9999999998876 5678889877

>2cia_A Cytoplasmic protein NCK2; SH2-domain, SH3 domain, phosphorylation, binding specificity; HET: PTR MPD; 1.45A {Homo sapiens} PDB: 1z3k_A 2ci9_A* 2ci8_A*

Probab=99.88  E-value=9.3e-23  Score=168.98  Aligned_cols=85  Identities=27%  Similarity=0.570  Sum_probs=74.0

Q ss_pred             CCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeCCceecChHh
Q psy10852          8 HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPS   87 (563)
Q Consensus         8 ~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~sl~~   87 (563)
                      .+.++||||.|+|++||++|+....+|+||||+|++.+|.|+|||+.+++|+||+|... ++    .|.+++..|.||.+
T Consensus         2 p~~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~-~g----~~~l~~~~F~sl~~   76 (102)
T 2cia_A            2 PLGSEWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLV-DN----VYCIGQRRFHTMDE   76 (102)
T ss_dssp             ---CTTBCCSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEECCSSSCEEEEEEEE-TT----EEEETTEEESSHHH
T ss_pred             CcCCccccCCCCHHHHHHHHhhCCCCcEEEEEECCCCCCCEEEEEEeCCeeEEEEEEec-CC----EEEECCcCcCCHHH
Confidence            35689999999999999999643456999999999889999999999999999999953 33    49999999999999


Q ss_pred             hHHhhhcccC
Q psy10852         88 LLAFYKVHYL   97 (563)
Q Consensus        88 Li~~y~~~~~   97 (563)
                      ||+||+.+++
T Consensus        77 LV~~y~~~~l   86 (102)
T 2cia_A           77 LVEHYKKAPI   86 (102)
T ss_dssp             HHHHHHHSCS
T ss_pred             HHHHHhhCcc
Confidence            9999999877

>2cs0_A Hematopoietic SH2 domain containing; ALX, FLJ14886, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.93.1.1

Probab=99.87  E-value=2.9e-22  Score=170.76  Aligned_cols=100  Identities=23%  Similarity=0.531  Sum_probs=87.3

Q ss_pred             CCCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeC--Cc
Q psy10852          3 GTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG--DK   80 (563)
Q Consensus         3 ~~~~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~--~~   80 (563)
                      ..+..++.++||||.|+|++||++|+. ..+|+||||+|++.+| |+|||+.++.|+||+|.+..++    .|.+.  ..
T Consensus         8 ~~~~~~~~~~WyhG~isR~~Ae~lL~~-~~~G~FLVR~S~~~~~-y~LSv~~~~~v~H~~I~~~~~g----~~~l~~~~~   81 (119)
T 2cs0_A            8 GQLAQDGVPEWFHGAISREDAENLLES-QPLGSFLIRVSHSHVG-YTLSYKAQSSCCHFMVKLLDDG----TFMIPGEKV   81 (119)
T ss_dssp             SCCCSSSCCSSBCSSCCHHHHHHHHHT-SCTTCEEEEECSSSSS-EEEEECCSSSCEEEEEEECTTS----CEECTTCSC
T ss_pred             hhhccccCCCccccCCCHHHHHHHhcC-CCCCEEEEEecCCCCC-EEEEEEECCEEEEEEEEEcCCC----cEEEecCCC
Confidence            456778889999999999999999975 4469999999998788 9999999999999999987654    38775  47


Q ss_pred             eecChHhhHHhhhcccCC--Cccccccccc
Q psy10852         81 TFSDLPSLLAFYKVHYLD--TSPLIKPATK  108 (563)
Q Consensus        81 ~F~sl~~Li~~y~~~~~~--~~~L~~p~~~  108 (563)
                      .|.||.+||+||+.+++.  .+.|+.||++
T Consensus        82 ~F~sl~eLV~~y~~~~l~~~~~~L~~P~~~  111 (119)
T 2cs0_A           82 AHTSLDALVTFHQQKPIEPRRELLTQPCRQ  111 (119)
T ss_dssp             CBSSHHHHHHHHTTSCCSSCCCCCCSBCCC
T ss_pred             cCCCHHHHHHHHhhCcCCCCCCEeCccCCC
Confidence            999999999999999875  5778899987

>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens}

Probab=99.87  E-value=1.6e-22  Score=170.20  Aligned_cols=100  Identities=21%  Similarity=0.459  Sum_probs=84.6

Q ss_pred             CCCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEE------CCeEEEEEEEEecCCCcceEEE
Q psy10852          3 GTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKE------NNKVSHYIINKITNTEQQTCYK   76 (563)
Q Consensus         3 ~~~~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~------~~~v~h~~I~~~~~~~~~~~~~   76 (563)
                      ...+.++.++||||.|+|++||++|+....+|+||||+|+ .+|.|+|||+.      ++.|+||+|.+..++    .|.
T Consensus         3 ~~~~~l~~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~-~~g~y~LSv~~~~~~~~~~~v~H~~I~~~~~g----~~~   77 (110)
T 2ekx_A            3 SGSSGLDDYDWFAGNISRSQSEQLLRQKGKEGAFMVRNSS-QVGMYTVSLFSKAVNDKKGTVKHYHVHTNAEN----KLY   77 (110)
T ss_dssp             CCSSCTTTSSSBCCSCCHHHHHHHHHHTCCTTEEEEEECS-STTCEEEEECCCCSSCSSCCCEEEECEECTTC----CEE
T ss_pred             CccCcccCCCeecCCCCHHHHHHHHhccCCCceEEEEecC-CCCCEEEEEEeccccCCCCcEEEEEEEECCCC----CEE
Confidence            4567889999999999999999999876467999999994 58999999996      579999999987554    388


Q ss_pred             eC-CceecChHhhHHhhhcccCC-Ccccccccc
Q psy10852         77 IG-DKTFSDLPSLLAFYKVHYLD-TSPLIKPAT  107 (563)
Q Consensus        77 ~~-~~~F~sl~~Li~~y~~~~~~-~~~L~~p~~  107 (563)
                      +. +..|.||.+||+||+.++.+ .+.|+.||+
T Consensus        78 l~~~~~F~sl~~LV~~y~~~~~~l~~~L~~Pv~  110 (110)
T 2ekx_A           78 LAENYCFDSIPKLIHYHQHNSAGMITRLRHPVS  110 (110)
T ss_dssp             SSTTCCCSCHHHHHHHHHHSCCSSSCCCCEECC
T ss_pred             ECCCCccCCHHHHHHHHeeCCCCCceecCccCC
Confidence            85 58999999999999998765 566777763

>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_A 3t04_A 1ab2_A

Probab=99.87  E-value=2e-22  Score=170.24  Aligned_cols=96  Identities=29%  Similarity=0.478  Sum_probs=84.0

Q ss_pred             CCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEe-CCceecChH
Q psy10852          8 HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKI-GDKTFSDLP   86 (563)
Q Consensus         8 ~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~-~~~~F~sl~   86 (563)
                      ++.++||||.|+|++||++|+. ..+|+||||+|++.+|.|+|||+.+++|+||+|.+..+|    .|.+ ++..|.||.
T Consensus         2 L~~~~Wyhg~isR~~Ae~lL~~-~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g----~~~~~~~~~F~sl~   76 (112)
T 3k2m_A            2 LEKHSWYHGPVSRNAAEYLLSS-GINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDG----KLYVSSESRFNTLA   76 (112)
T ss_dssp             GGGSTTEEESCCHHHHHHHTTT-CCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTS----CEESSTTCCBSSHH
T ss_pred             CccCcceeeCCCHHHHHHHhcc-CCCceEEEEeCCCCCCCEEEEEEeCCcEEEEEEEECCCC----cEEECCCCeECCHH
Confidence            5678999999999999999976 456999999999889999999999999999999986554    3666 468999999


Q ss_pred             hhHHhhhcccCC-Cccccccccc
Q psy10852         87 SLLAFYKVHYLD-TSPLIKPATK  108 (563)
Q Consensus        87 ~Li~~y~~~~~~-~~~L~~p~~~  108 (563)
                      +||+||+.+..+ .+.|..||++
T Consensus        77 ~LV~~y~~~~~~l~~~L~~P~~~   99 (112)
T 3k2m_A           77 ELVHHHSTVADGLITTLHYPAPK   99 (112)
T ss_dssp             HHHHHHHHCCTTSSSCCCEECCC
T ss_pred             HHHHHHhhCCCCCccCCCCCCCC
Confidence            999999998765 5678889877

>1aot_F FYN protein-tyrosine kinase; SH2 domain, signal transduction, peptide complex, complex (proto-oncogene/early protein); HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1aou_F*

Probab=99.87  E-value=9.5e-23  Score=170.61  Aligned_cols=97  Identities=35%  Similarity=0.653  Sum_probs=83.5

Q ss_pred             CCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEecCCCCcceEEEEEE-----CCeEEEEEEEEecCCCcceEEEe-CCc
Q psy10852          8 HDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKITNTEQQTCYKI-GDK   80 (563)
Q Consensus         8 ~~~~~w~~g~i~r~~ae~~L~~-~~~~G~FLvR~s~~~~~~~~lsv~~-----~~~v~h~~I~~~~~~~~~~~~~~-~~~   80 (563)
                      ++.++||||.|+|++||++|+. ...+|+||||+|++.+|.|+|||+.     ++.|+||+|.+..++    .|.+ ++.
T Consensus         2 l~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~~~LSv~~~~~~~~~~v~H~~I~~~~~g----~~~l~~~~   77 (106)
T 1aot_F            2 IQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKLDNG----GYYITTRA   77 (106)
T ss_dssp             CCSSSSCCBSCCHHHHHHHHHTTTCCTTEECCBCBSSSSSBBCCEEECCBTTTBCCEEECCBEEETTT----EEEEETTE
T ss_pred             CccCccCCCCCCHHHHHHHHhhCCCCCcEEEEEeCCCCCCCEEEEEEecccCCCCcEEEEEEEEeCCC----CEEECCCC
Confidence            5778999999999999999986 3467999999999889999999996     789999999987654    3666 468


Q ss_pred             eecChHhhHHhhhcccCC-Cccccccccc
Q psy10852         81 TFSDLPSLLAFYKVHYLD-TSPLIKPATK  108 (563)
Q Consensus        81 ~F~sl~~Li~~y~~~~~~-~~~L~~p~~~  108 (563)
                      .|.||.+||+||+.++.+ .+.|..||++
T Consensus        78 ~F~sl~~LV~~y~~~~~~l~~~L~~p~~~  106 (106)
T 1aot_F           78 QFETLQQLVQHYSERAAGLSSRLVVPSHK  106 (106)
T ss_dssp             EESSHHHHHHHHTTCCTTSSSCSCSSCCC
T ss_pred             ccCCHHHHHHHhccCCCCCcEeecccCCC
Confidence            999999999999998765 6778888864

>2kk6_A Proto-oncogene tyrosine-protein kinase FER; methods development, SH2, NESG, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; NMR {Homo sapiens}

Probab=99.87  E-value=2.7e-22  Score=169.44  Aligned_cols=96  Identities=32%  Similarity=0.598  Sum_probs=84.2

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeCCceecC
Q psy10852          5 FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSD   84 (563)
Q Consensus         5 ~~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~s   84 (563)
                      ...++.++||||.|+|++||++|+.   +|+||||+|++.+|.|+|||+.++.|+||+|... ++    .|.+++..|.|
T Consensus        11 ~~~~~~~~WyhG~isR~eAe~lL~~---~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~-~g----~y~~~~~~F~s   82 (116)
T 2kk6_A           11 MKPLAEQDWYHGAIPRIEAQELLKK---QGDFLVRESHGKPGEYVLSVYSDGQRRHFIIQYV-DN----MYRFEGTGFSN   82 (116)
T ss_dssp             CCCTTTCTTEEESCCHHHHHHTCCS---TTCEEEEECTTCTTCEEEEEEETTEEEEEEEEEE-TT----EEESSSCEESC
T ss_pred             ccccccCCCccCCCCHHHHHHHhcc---CCcEEEEECCCCCCcEEEEEEECCeEEEEEEEec-CC----EEEECCCEeCC
Confidence            4567788999999999999999974   7999999999889999999999999999999963 33    49999999999


Q ss_pred             hHhhHHhhhcccCC-----Cccccccccc
Q psy10852         85 LPSLLAFYKVHYLD-----TSPLIKPATK  108 (563)
Q Consensus        85 l~~Li~~y~~~~~~-----~~~L~~p~~~  108 (563)
                      |.+||+||+.+++.     .+.|+.||++
T Consensus        83 l~eLV~~y~~~~~~i~~~~~~~L~~Pv~r  111 (116)
T 2kk6_A           83 IPQLIDHHYTTKQVITKKSGVVLLNPIPK  111 (116)
T ss_dssp             HHHHHHHHHHTTCCSCTTTTCCCCSCCCC
T ss_pred             HHHHHHHHhhCCCCccCCCCCeECcccCC
Confidence            99999999998652     4678888876

>1mil_A SHC adaptor protein; SH2 domain, phosphorylation, collagen, growth regulation, transforming protein, alternative initiation; 2.70A {Homo sapiens} SCOP: d.93.1.1 PDB: 1tce_A*

Probab=99.87  E-value=1.5e-22  Score=168.42  Aligned_cols=94  Identities=28%  Similarity=0.503  Sum_probs=81.4

Q ss_pred             CCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeCCceecChH
Q psy10852          7 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLP   86 (563)
Q Consensus         7 ~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~sl~   86 (563)
                      .++.++||||.|+|++||++|+.   +|+||||+|++.+|.|+|||+.++.|+||+|.. .++    .|.+++..|.||.
T Consensus         3 ~l~~~~Wyhg~isR~~Ae~lL~~---~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~-~~g----~~~~~~~~F~sl~   74 (104)
T 1mil_A            3 QLRGEPWFHGKLSRREAEALLQL---NGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVD-PEG----VVRTKDHRFESVS   74 (104)
T ss_dssp             STTTCTTBCSSCCHHHHHTTCCS---TTEEEEEECCSSCSSEEEEEEETTEEEEEEEBC-TTS----SEECSSCEESSHH
T ss_pred             ccccCCcCCCCCCHHHHHHHhcc---CCcEEEEeCCCCCCCEEEEEEECCEEEEEEEEe-CCC----EEEECCceeCCHH
Confidence            56778999999999999999973   799999999988999999999999999999963 322    3888899999999


Q ss_pred             hhHHhhhcccCC------Cccccccccc
Q psy10852         87 SLLAFYKVHYLD------TSPLIKPATK  108 (563)
Q Consensus        87 ~Li~~y~~~~~~------~~~L~~p~~~  108 (563)
                      +||+||+.+++.      .+.|..||.+
T Consensus        75 ~LI~~y~~~~~p~~~~g~~~~L~~Pv~r  102 (104)
T 1mil_A           75 HLISYHMDNHLPIISAGSELCLQQPVER  102 (104)
T ss_dssp             HHHHHHHHHTCCEEETTEEECCCEECCC
T ss_pred             HHHHHHhhCCCccccCCceEEeCccCCC
Confidence            999999998752      3567888876

>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain, protein protein interactions, PTR residues, HYDR peptide complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A* 1aya_A* 1ayb_A* 1ayc_A* 1ayd_A

Probab=99.87  E-value=2.5e-22  Score=168.83  Aligned_cols=97  Identities=28%  Similarity=0.505  Sum_probs=79.2

Q ss_pred             CCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEe-CCceecCh
Q psy10852          7 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKI-GDKTFSDL   85 (563)
Q Consensus         7 ~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~-~~~~F~sl   85 (563)
                      .+++++||||.|+|++||++|+....+|+||||+|++.+|.|+|||+.++.|+||+|...+.     .|.+ ++..|.||
T Consensus         3 ~l~~~~Wyhg~isr~~Ae~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~-----~~~~~~~~~F~sl   77 (109)
T 3tkz_A            3 HMTSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGD-----YYDLYGGEKFATL   77 (109)
T ss_dssp             ----CCSBCTTCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECSS-----CEESSSSCCBSSH
T ss_pred             ccccCCceecCCCHHHHHHHHhcCCCCCEEEEEecCCCCCCEEEEEEECCEEEEEEEEeCCC-----EEEecCCcccCCH
Confidence            46788999999999999999987445799999999988999999999999999999987532     2776 56899999


Q ss_pred             HhhHHhhhcccCC-------Cccccccccc
Q psy10852         86 PSLLAFYKVHYLD-------TSPLIKPATK  108 (563)
Q Consensus        86 ~~Li~~y~~~~~~-------~~~L~~p~~~  108 (563)
                      .+||+||+.+++.       .+.|++||.+
T Consensus        78 ~~LV~~y~~~~~~l~~~~gl~~~L~~Pv~~  107 (109)
T 3tkz_A           78 AELVQYYMEHHGQLKEKNGDVIELKYPLNC  107 (109)
T ss_dssp             HHHHHHHHHSTTSEEETTSCBCCCCEECC-
T ss_pred             HHHHHHHHhCcCccccCCCceEECCCcccC
Confidence            9999999998742       3567777765

>3maz_A Signal-transducing adaptor protein 1; modular domain, phosphotyrosine, specificity, cytoplasm, phosphoprotein, SH2 domain, signaling protein; HET: PTR; 1.90A {Homo sapiens}

Probab=99.87  E-value=3.9e-22  Score=166.58  Aligned_cols=100  Identities=19%  Similarity=0.342  Sum_probs=80.0

Q ss_pred             CCCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEE---CCeEEEEEEEEecCCCcceEEEeCC
Q psy10852          3 GTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKE---NNKVSHYIINKITNTEQQTCYKIGD   79 (563)
Q Consensus         3 ~~~~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~---~~~v~h~~I~~~~~~~~~~~~~~~~   79 (563)
                      ...+.++.++||||.|+|.+||++|...+.+|+||||+|++.+ .|+|||+.   ++.|+||+|.+. ++    .|+|..
T Consensus         7 ~~~~~l~~epWff~~isR~eAE~lL~~~~~~GaFLVR~Se~~~-~ySLSVR~~~~~~~VKHYkI~~~-~G----~y~I~~   80 (125)
T 3maz_A            7 DYVDVLNPMPACFYTVSRKEATEMLQKNPSLGNMILRPGSDSR-NYSITIRQEIDIPRIKHYKVMSV-GQ----NYTIEL   80 (125)
T ss_dssp             ----CCCCCCTTBCCCCHHHHHHHHHHCGGGCSEEEEECTTSS-SEEEEEEECSSSCEEEEEEEEEE-TT----EEEECS
T ss_pred             cccccccCCCCCcCCCCHHHHHHHHhccCCCCcEEEEeCCCCC-CEEEEEEecCCCCCEeeeEEEEe-CC----EEEEec
Confidence            3457788899999999999999999766657999999998755 89999998   689999999998 34    488862


Q ss_pred             ---ceecChHhhHHhhhcccCC-Cccccccccc
Q psy10852         80 ---KTFSDLPSLLAFYKVHYLD-TSPLIKPATK  108 (563)
Q Consensus        80 ---~~F~sl~~Li~~y~~~~~~-~~~L~~p~~~  108 (563)
                         ..|.||.+||+||+.++++ .+.|..||-.
T Consensus        81 ~~~~~F~SL~eLV~yY~~~adGl~~~L~~~c~~  113 (125)
T 3maz_A           81 EKPVTLPNLFSVIDYFVKETRGNLRPFIASTDE  113 (125)
T ss_dssp             SSCEEESSHHHHHHHHHHHTTTCCCBCCC----
T ss_pred             CCCcCcCCHHHHHHHHHhCCCcCcccccccccc
Confidence               5799999999999999887 4567888843

>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide binding protein; HET: PTR; 1.80A {Mus musculus} SCOP: d.93.1.1 PDB: 1r1q_A* 1r1s_A*

Probab=99.87  E-value=2.9e-22  Score=165.23  Aligned_cols=89  Identities=22%  Similarity=0.530  Sum_probs=78.6

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeCCceecC
Q psy10852          5 FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSD   84 (563)
Q Consensus         5 ~~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~s   84 (563)
                      +..++.++||||.|+|++||++|+.. .+|+||||+|++.+|.|+|||+.++.|+||+|.+..++    .|.+.+..|.|
T Consensus         3 yi~l~~~~Wyhg~isR~~Ae~lL~~~-~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g----~~~l~~~~F~s   77 (100)
T 1r1p_A            3 FIDIEFPEWFHEGLSRHQAENLLMGK-DIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTKG----NYFLWTEKFPS   77 (100)
T ss_dssp             ---CTTTTTSCTTCCHHHHHHHHHTS-CTTBEEEEECSSSTTCEEEEEECSSSEEEEECEECTTC----CEESSSCEESS
T ss_pred             ccEeccCCccccCCCHHHHHHHhcCC-CCCEEEEEecCCCCCCEEEEEEECCEEEEEEEEEcCCC----CEEEeCCEeCC
Confidence            44678899999999999999999886 46999999999889999999999999999999986544    38898899999


Q ss_pred             hHhhHHhhhcccCC
Q psy10852         85 LPSLLAFYKVHYLD   98 (563)
Q Consensus        85 l~~Li~~y~~~~~~   98 (563)
                      |.+||+||+.+++.
T Consensus        78 l~~LV~~y~~~~l~   91 (100)
T 1r1p_A           78 LNKLVDYYRTTSIS   91 (100)
T ss_dssp             HHHHHHHHTTSCSS
T ss_pred             HHHHHHHHHhCCCC
Confidence            99999999998774

>3s9k_A Tyrosine-protein kinase ITK/TSK; proline isomerization, CIS proline, domain swapped dimer, SH transferase; HET: CIT; 2.35A {Mus musculus} PDB: 2etz_A* 2eu0_A* 1lui_A 1luk_A 1lum_A 1lun_A 2k79_B 2k7a_B

Probab=99.87  E-value=3.7e-22  Score=170.55  Aligned_cols=102  Identities=25%  Similarity=0.472  Sum_probs=83.5

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEEC------CeEEEEEEEEecCCCcceEEEe-
Q psy10852          5 FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKEN------NKVSHYIINKITNTEQQTCYKI-   77 (563)
Q Consensus         5 ~~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~------~~v~h~~I~~~~~~~~~~~~~~-   77 (563)
                      -+.++.++||||.|+|++||++|+..+.+|+||||+| +.+|.|+|||+..      +.|+||+|......+|.  |.+ 
T Consensus         3 ~~~l~~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S-~~~g~y~LSv~~~~~~~~~~~v~H~~I~~~~~~~g~--~~~~   79 (118)
T 3s9k_A            3 PNNLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDS-RTPGTYTVSVFTKAIISENPCIKHYHIKETNDSPKR--YYVA   79 (118)
T ss_dssp             --CGGGSTTBCTTCCHHHHHHHHHHHCCTTCEEEEEC-SSTTCEEEEEEECCSCSSSCEEEEEEEEECSCSSCC--EEEE
T ss_pred             ccccccCceecCCCCHHHHHHHHHhcCCCCeEEEEee-CCCCCEEEEEEecccccCCCceEEEEEeEEECCCCC--EEEC
Confidence            4678889999999999999999987555799999999 7799999999996      89999999642222333  555 


Q ss_pred             CCceecChHhhHHhhhcccCC-Ccccccccccc
Q psy10852         78 GDKTFSDLPSLLAFYKVHYLD-TSPLIKPATKT  109 (563)
Q Consensus        78 ~~~~F~sl~~Li~~y~~~~~~-~~~L~~p~~~~  109 (563)
                      ++..|.||.+||+||+.++.+ .+.|..||+++
T Consensus        80 ~~~~F~sl~~LV~~y~~~~~~l~~~L~~Pv~~~  112 (118)
T 3s9k_A           80 EKYVFDSIPLLIQYHQYNGGGLVTRLRYPVCGS  112 (118)
T ss_dssp             CSCCCSCHHHHHHHHHHCCTTSSSCCCCCCCCS
T ss_pred             CCcccCCHHHHHHHheeCCCCCccCCCCcCCCC
Confidence            567999999999999999876 56788999873

>2aug_A Growth factor receptor-bound protein 14; phosphorylation, SH2 domain, signaling protein; 2.30A {Homo sapiens}

Probab=99.87  E-value=5.5e-22  Score=170.30  Aligned_cols=102  Identities=25%  Similarity=0.476  Sum_probs=84.4

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcCC-CCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeC--Ccee
Q psy10852          6 DPHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG--DKTF   82 (563)
Q Consensus         6 ~~~~~~~w~~g~i~r~~ae~~L~~~-~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~--~~~F   82 (563)
                      +.++.++||||.|+|++||++|+.. ..+|+||||+|++.+|.|+|||+.++.|+||+|.+... +|.++|.++  ...|
T Consensus        21 ~~l~~~~WyhG~isR~eAe~lL~~~g~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~-~G~~~~~l~~~~~~F   99 (126)
T 2aug_A           21 MIHRSQPWFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTFVLSMSHGQKIKHFQIIPVED-DGEMFHTLDDGHTRF   99 (126)
T ss_dssp             -CGGGSTTEETTCCHHHHHHHHHTTTCCTTEEEEEECSSSSCCEEEEEEETTEEEEEEEEEEEE-TTEEEEESSTTSSCB
T ss_pred             cccccCCcccCCCCHHHHHHHHhccCCCCCEEEEeecCCCCCCEEEEEEcCCeEEEEEEEEECC-CCeEEEEeCCCCCcc
Confidence            5677889999999999999999874 45799999999988999999999999999999998632 233223454  4799


Q ss_pred             cChHhhHHhhhcccCC-Cccccccccc
Q psy10852         83 SDLPSLLAFYKVHYLD-TSPLIKPATK  108 (563)
Q Consensus        83 ~sl~~Li~~y~~~~~~-~~~L~~p~~~  108 (563)
                      .||.+||+||+.++++ .+.|..||++
T Consensus       100 ~SL~eLV~~y~~~~~~l~~~L~~P~~r  126 (126)
T 2aug_A          100 TDLIQLVEFYQLNKGVLPCKLKHYCAR  126 (126)
T ss_dssp             SSHHHHHHHHTTCCTTSSSCCCEECCC
T ss_pred             CCHHHHHHHHhhCCCCCceecCCCcCC
Confidence            9999999999998775 5778888864

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B

Probab=99.87  E-value=5.4e-22  Score=184.48  Aligned_cols=129  Identities=19%  Similarity=0.339  Sum_probs=106.5

Q ss_pred             cceeeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEeeCCCeeeEEecCceeecccccccccccccccCCCCCCCC
Q psy10852        109 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVP  188 (563)
Q Consensus       109 ~~~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~~~g~~G~fP~~yv~~~~~~~~~~~~~~~~~~g~~~~~~  188 (563)
                      ....++|+|+|.++.++||+|++||+|.|+++.+++||.|+ .+|+.||||++||+.+.......+           ..+
T Consensus        10 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~~~~~~~-----------~~p   77 (193)
T 1ng2_A           10 ILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQ-MKAKRGWIPASFLEPLDSPDETED-----------PEP   77 (193)
T ss_dssp             CCEEEECSSCBCCSSTTCCCBCTTCEEEEEECCTTSCCEEE-ECCCCCCCCGGGCCCSSCSSCSCC-----------CCC
T ss_pred             cCcEEEEcCCcCCCCCCcCCCCCCCEEEEEEecCCCeEEEE-ECCeeeEechheEEeeccccccch-----------hhc
Confidence            35679999999999999999999999999999999999998 899999999999998764211000           000


Q ss_pred             CCCCCccccccccccCccceeeeeccccCCCCCCceeeccCCEEEEeeecCCCceeeeeCCceeeccccceeecCC
Q psy10852        189 QQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT  264 (563)
Q Consensus       189 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~a~~~~eLsf~~Gd~v~V~~~~~~~W~~g~~~g~~G~~P~~~ve~~~~  264 (563)
                                    . .....+++.|.+.+..++||+|.+||+|.|+++.++|||+|+++|+.||||.+||+.+..
T Consensus        78 --------------~-~~~~~~~al~dy~a~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~  138 (193)
T 1ng2_A           78 --------------N-YAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQ  138 (193)
T ss_dssp             --------------C-TTCEEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEETTS
T ss_pred             --------------c-ccceeeeeccccCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCEEEEehHHeEECCC
Confidence                          0 011234455566788999999999999999999999999999999999999999999875

>2ecd_A Tyrosine-protein kinase ABL2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.87  E-value=1.5e-22  Score=172.55  Aligned_cols=102  Identities=28%  Similarity=0.453  Sum_probs=88.0

Q ss_pred             CCCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEe-CCce
Q psy10852          3 GTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKI-GDKT   81 (563)
Q Consensus         3 ~~~~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~-~~~~   81 (563)
                      +.++.++.++||||.|+|++||++|+.. .+|+||||+|++.+|.|+|||+.++.|+||+|.+..++    .|.+ .+..
T Consensus         8 ap~~~l~~~~WyhG~isR~~Ae~lL~~~-~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g----~~~l~~~~~   82 (119)
T 2ecd_A            8 TPVNSLEKHSWYHGPVSRSAAEYLLSSL-INGSFLVRESESSPGQLSISLRYEGRVYHYRINTTADG----KVYVTAESR   82 (119)
T ss_dssp             CSSCCCCCSSSEEEECCHHHHHHHHHTS-CTTBEEEEEESSSTTEEEEEEECSSCEEEECCCCCSSS----CCCCCSSCC
T ss_pred             ccccccccCccccCCCCHHHHHHHhcCC-CCCeEEEEeCCCCCCCEEEEEEECCeEEEEEEEEcCCC----CEEEcCCCc
Confidence            4567888999999999999999999764 46999999999889999999999999999999986544    2666 4689


Q ss_pred             ecChHhhHHhhhcccCC-Ccccccccccc
Q psy10852         82 FSDLPSLLAFYKVHYLD-TSPLIKPATKT  109 (563)
Q Consensus        82 F~sl~~Li~~y~~~~~~-~~~L~~p~~~~  109 (563)
                      |.||.+||+||+.++.+ .+.|..||++.
T Consensus        83 F~sl~~LV~~y~~~~~gl~~~L~~P~~~~  111 (119)
T 2ecd_A           83 FSTLAELVHHHSTVADGLVTTLHYPAPKC  111 (119)
T ss_dssp             CSSHHHHHHHHHHCCTTSSSCCCBCCSSC
T ss_pred             CCCHHHHHHHHhhCCCCCceECCCccCCC
Confidence            99999999999998765 57788999873

>2dlz_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.87  E-value=4e-22  Score=169.62  Aligned_cols=98  Identities=24%  Similarity=0.440  Sum_probs=85.5

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeC-Cceec
Q psy10852          5 FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFS   83 (563)
Q Consensus         5 ~~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~   83 (563)
                      ...++.++||||.|+|++||++|+.. .+|+||||+|++.+|.|+|||+.++.|+||+|.+.+ +    .|.+. ...|.
T Consensus        10 ~~~l~~~~WyhG~isR~~Ae~lL~~~-~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~-g----~~~l~~~~~F~   83 (118)
T 2dlz_A           10 EIDYTAYPWFAGNMERQQTDNLLKSH-ASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKD-N----WIHITEAKKFD   83 (118)
T ss_dssp             CCCGGGSTTEEESCCHHHHHHHHHHS-CTTBEEEECCSCSSCCEEEEEECSSSEEEEEEEEET-T----EEESTTSCCBS
T ss_pred             ccccccCCceecCCCHHHHHHHhcCC-CCCEEEEEeCCCCCCCEEEEEEECCcEEEEEEEEcC-C----EEEEeCCcccC
Confidence            45678889999999999999999875 569999999998899999999999999999999853 3    38886 48999


Q ss_pred             ChHhhHHhhhcccCC------Cccccccccc
Q psy10852         84 DLPSLLAFYKVHYLD------TSPLIKPATK  108 (563)
Q Consensus        84 sl~~Li~~y~~~~~~------~~~L~~p~~~  108 (563)
                      ||.+||+||+.+++.      .+.|..||.+
T Consensus        84 sl~~LV~~y~~~~l~~~~~gl~~~L~~Pv~~  114 (118)
T 2dlz_A           84 SLLELVEYYQCHSLKESFKQLDTTLKYPYSG  114 (118)
T ss_dssp             SHHHHHHHHTTSCTTTTCTTCCCCCCBCCSC
T ss_pred             CHHHHHHHHhhCcccccCCCcccEeCCcCCC
Confidence            999999999999873      3568888876

>2lnw_A VAV-2, guanine nucleotide exchange factor VAV2; signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2lnx_A

Probab=99.87  E-value=5.8e-22  Score=169.26  Aligned_cols=99  Identities=25%  Similarity=0.437  Sum_probs=85.0

Q ss_pred             CCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeC-Ccee
Q psy10852          4 TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTF   82 (563)
Q Consensus         4 ~~~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F   82 (563)
                      ....++.++||||.|+|++||++|+.. .+|+||||+|++.+|.|+|||+.++.|+||+|.+.+++     |.+. +..|
T Consensus        15 ~~~~l~~~~WyhG~isR~eAe~lL~~~-~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~-----~~l~~~~~F   88 (122)
T 2lnw_A           15 REIDYTAYPWFAGNMERQQTDNLLKSH-ASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKDNW-----IHITEAKKF   88 (122)
T ss_dssp             SCCCSTTSTTBCCSCCHHHHHHHHHHS-CTTBEEEEECCCSSEEEEEEEECSSCEEEEEEEEETTE-----EESSSSCCB
T ss_pred             ccCCcccCcCCCcCCCHHHHHHHhcCC-CCCeEEEEeCCCCCCcEEEEEEeCCcEEEEEEEEcCCE-----EEECCCCeE
Confidence            456788899999999999999999874 46999999999889999999999999999999976432     7775 5899


Q ss_pred             cChHhhHHhhhcccCC------Cccccccccc
Q psy10852         83 SDLPSLLAFYKVHYLD------TSPLIKPATK  108 (563)
Q Consensus        83 ~sl~~Li~~y~~~~~~------~~~L~~p~~~  108 (563)
                      .||.+||+||+.+++.      .+.|..||.+
T Consensus        89 ~sl~eLV~~y~~~~l~~~~~~l~~~L~~P~~~  120 (122)
T 2lnw_A           89 DSLLELVEYYQCHSLKESFKQLDTTLKYPYKS  120 (122)
T ss_dssp             SSHHHHHHHHHHSCGGGTCTTCCCCCCBCSSS
T ss_pred             CCHHHHHHHHhhCcCcccCCCcCeeeCCcCCC
Confidence            9999999999999662      3567788765

>1h9o_A Phosphatidylinositol 3-kinase; transferase/receptor, complex (phosphotransferase/receptor), phosphotransferase, SH2 domain; HET: PTR; 1.79A {Homo sapiens} SCOP: d.93.1.1 PDB: 1pic_A* 1bfi_A 1bfj_A 1qad_A

Probab=99.87  E-value=4.8e-22  Score=167.67  Aligned_cols=99  Identities=30%  Similarity=0.503  Sum_probs=84.2

Q ss_pred             CCCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEe-C-Cc
Q psy10852          3 GTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKI-G-DK   80 (563)
Q Consensus         3 ~~~~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~-~-~~   80 (563)
                      +.+..++.++||||.|+|++||++|+. ..+|+||||+| +.+|.|+|||+.++.|+||+|.+..++     |.+ + ..
T Consensus         2 ~~~~~~~~~~Wyhg~isR~~Ae~lL~~-~~~G~FLVR~S-~~~g~y~LSv~~~~~v~H~~I~~~~~g-----~~~~~~~~   74 (112)
T 1h9o_A            2 SPIPHHDEKTWNVGSSNRNKAENLLRG-KRDGTFLVRES-SKQGCYACSVVVDGEVKHCVINKTATG-----YGFAEPYN   74 (112)
T ss_dssp             CSCGGGSGGGTBCCSCCHHHHHHHHTT-CCTTEEEEEEC-SSTTCEEEEEEETTEEEEEEEEEETTE-----EESSTTCC
T ss_pred             CCCccccCCCcccCCCCHHHHHHHhcC-CCCceEEEeec-CCCCCEEEEEEECCEEEEEEEEEcCCc-----eEEeCCCC
Confidence            457788999999999999999999975 45699999999 678999999999999999999987654     444 3 47


Q ss_pred             eecChHhhHHhhhcccCC------Cccccccccc
Q psy10852         81 TFSDLPSLLAFYKVHYLD------TSPLIKPATK  108 (563)
Q Consensus        81 ~F~sl~~Li~~y~~~~~~------~~~L~~p~~~  108 (563)
                      .|.||.+||+||+.+++.      .+.|..||.+
T Consensus        75 ~F~sl~~LV~~y~~~~l~~~~~gl~~~L~~P~~~  108 (112)
T 1h9o_A           75 LYSSLKELVLHYQHTSLVQHNDSLNVTLAYPVYA  108 (112)
T ss_dssp             CBSSHHHHHHHHHHSCGGGTCTTCCCCCCEETTC
T ss_pred             CcCCHHHHHHHHhhCcccccCCCcCeeCCCCcCC
Confidence            999999999999987642      4667888876

>2hdv_A SH2-B PH domain containing signaling mediator 1 gamma isoform; adapter protein, signaling protein; 2.00A {Mus musculus} PDB: 2hdx_A* 1rpy_A 1rqq_C*

Probab=99.86  E-value=5.3e-22  Score=166.99  Aligned_cols=89  Identities=26%  Similarity=0.484  Sum_probs=79.4

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcCCC--CCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeCCceec
Q psy10852          6 DPHDRNSWYFGMMTRQEAQAILLSEK--DNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFS   83 (563)
Q Consensus         6 ~~~~~~~w~~g~i~r~~ae~~L~~~~--~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~   83 (563)
                      ++++.++||||.|+|++||++|+...  .+|+||||+|++.+|.|+|||+.+++|+||+|.+..++    .|.+++..|.
T Consensus         4 ~~l~~~~WyhG~isR~~Ae~lL~~~g~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g----~~~l~~~~F~   79 (111)
T 2hdv_A            4 QPLSGYPWFHGMLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGECVLTFNFQGKAKHLRLSLNAAG----QCRVQHLHFQ   79 (111)
T ss_dssp             CCGGGSTTEEEECCHHHHHHHHHTTGGGGTTEEEEEECSSCTTEEEEEEEETTEEEEEEEEECTTC----CEEETTEEES
T ss_pred             cccccCCCcCCCCCHHHHHHHHHHcCCCCCCeEEEEecCCCCCCEEEEEEeCCeEEEEEEEEcCCC----CEEeCCceeC
Confidence            46778899999999999999998752  67999999999889999999999999999999986554    4888889999


Q ss_pred             ChHhhHHhhhcccCC
Q psy10852         84 DLPSLLAFYKVHYLD   98 (563)
Q Consensus        84 sl~~Li~~y~~~~~~   98 (563)
                      ||.+||+||+.+++.
T Consensus        80 sl~~LV~~y~~~~l~   94 (111)
T 2hdv_A           80 SIFDMLEHFRVHPIP   94 (111)
T ss_dssp             SHHHHHHHHTTSCCC
T ss_pred             CHHHHHHHHhhCCcc
Confidence            999999999998763

>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.86  E-value=4.8e-22  Score=171.14  Aligned_cols=102  Identities=26%  Similarity=0.469  Sum_probs=86.6

Q ss_pred             CCCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEE------CCeEEEEEEEEecCCCcceEEE
Q psy10852          3 GTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKE------NNKVSHYIINKITNTEQQTCYK   76 (563)
Q Consensus         3 ~~~~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~------~~~v~h~~I~~~~~~~~~~~~~   76 (563)
                      +..+.++.++||||.|+|++||++|+....+|+||||+| +.+|.|+|||+.      ++.|+||+|.+..++    .|.
T Consensus         8 ~~~~~l~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S-~~~g~y~LSv~~~~~~~~~~~v~H~~I~~~~~g----~~~   82 (125)
T 2dm0_A            8 NKITNLEIYEWYHRNITRNQAEHLLRQESKEGAFIVRDS-RHLGSYTISVFMGARRSTEAAIKHYQIKKNDSG----QWY   82 (125)
T ss_dssp             CCSCCCTTSSSBCCSCCHHHHHHHHHHHCSTTCBCEEEE-TTEEEEEEEEECCCSSSSSCCEEEEEEEECTTC----CEE
T ss_pred             CCccccccCCcccCCCCHHHHHHHHhhcCCCCEEEEEec-CCCCCEEEEEEeccccCCCCcEEEEEEEEcCCC----CEE
Confidence            456788899999999999999999986435799999999 458999999998      469999999987654    377


Q ss_pred             eC-CceecChHhhHHhhhcccCC-Ccccccccccc
Q psy10852         77 IG-DKTFSDLPSLLAFYKVHYLD-TSPLIKPATKT  109 (563)
Q Consensus        77 ~~-~~~F~sl~~Li~~y~~~~~~-~~~L~~p~~~~  109 (563)
                      +. +..|.||.+||+||+.++++ .+.|..||.+.
T Consensus        83 l~~~~~F~sl~eLV~~y~~~~~~l~~~L~~P~~~~  117 (125)
T 2dm0_A           83 VAERHAFQSIPELIWYHQHNAAGLMTRLRYPVGLM  117 (125)
T ss_dssp             SSSSCCCSSHHHHHHHHTTCCCSSSCCCCSBCCSS
T ss_pred             ECCCCccCCHHHHHHHhhhCCCCCccCCCCccCCC
Confidence            75 58999999999999998765 57788888773

>2iug_A Phosphatidylinositol 3-kinase regulatory alpha subunit; transferase, polymorphism, UBL conjugation, phosphorylation, SH2, PI3K, SH2 domain; 1.89A {Homo sapiens} PDB: 2iuh_A* 2iui_A* 1fu5_A* 1fu6_A 1oo3_A 1oo4_A* 2pna_A 2pnb_A

Probab=99.86  E-value=8.2e-22  Score=168.32  Aligned_cols=96  Identities=28%  Similarity=0.497  Sum_probs=83.5

Q ss_pred             CCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCC-CcceEEEEEECCeEEEEEEEEecCCCcceEEEeC-CceecC
Q psy10852          7 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTI-LGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSD   84 (563)
Q Consensus         7 ~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~-~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~s   84 (563)
                      .++.++||||.|+|++||++|+.. .+|+||||+|++. +|.|+|||+.++.|+||+|.+.. +    .|.+. +..|.|
T Consensus         7 ~l~~~~WyhG~isR~eAe~lL~~~-~~G~FLVR~S~~~~~g~y~LSv~~~~~v~H~~I~~~~-g----~~~l~~~~~F~s   80 (120)
T 2iug_A            7 SLQNAEWYWGDISREEVNEKLRDT-ADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRD-G----KYGFSDPLTFSS   80 (120)
T ss_dssp             HHHTCTTBCCSCCHHHHHHHHTTC-CTTEEEEEECSSGGGCSEEEEEEETTEEEEEEEEEET-T----EEESSSSCCBSS
T ss_pred             ccccCCccccCCCHHHHHHHhcCC-CCcEEEEECCCCCCCCcEEEEEEECCEEEEEEEEEcC-C----EEEECCCCccCC
Confidence            456789999999999999999874 5699999999987 89999999999999999999863 3    38885 589999


Q ss_pred             hHhhHHhhhcccCC------Cccccccccc
Q psy10852         85 LPSLLAFYKVHYLD------TSPLIKPATK  108 (563)
Q Consensus        85 l~~Li~~y~~~~~~------~~~L~~p~~~  108 (563)
                      |.+||+||+.+++.      .+.|+.||.+
T Consensus        81 l~~LI~~y~~~~~~~~~~~l~~~L~~Pv~r  110 (120)
T 2iug_A           81 VVELINHYRNESLAQYNPKLDVKLLYPVSK  110 (120)
T ss_dssp             HHHHHHHHHHSCGGGTCGGGCCCCCEECCT
T ss_pred             HHHHHHHHHhCccccccCCcceeeCCcCCc
Confidence            99999999998863      4678888876

>2eo6_A B-cell linker protein; SH2, cytoplasmic adapter protein, B-cell adapter containing SH2 domain protein; NMR {Mus musculus}

Probab=99.86  E-value=5e-22  Score=174.46  Aligned_cols=100  Identities=22%  Similarity=0.322  Sum_probs=83.2

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCC--CCcceEEEEEECCeEEEEEEEEecCCCcceEEEeC-----
Q psy10852          6 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNT--ILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-----   78 (563)
Q Consensus         6 ~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~--~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-----   78 (563)
                      ..++.++||||.|+|++||++|+....+|+||||+|++  .+|.|+|||+.+++|+||+|.+..++  . .|.++     
T Consensus        18 ~~l~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~~~g~y~LSv~~~~~v~H~~I~~~~~g--~-~~~l~~~~~~   94 (141)
T 2eo6_A           18 AELLGKPWYAGACDRKSAEEALHRSNKDGSFLIRKSSGHDSKQPYTLVAFFNKRVYNIPVRFIEAT--K-QYALGKKKNG   94 (141)
T ss_dssp             HTTTTCSSEEESCCHHHHHHHHHHHCCTTCBCEEECSTTCSSCSEEEEEEETTEEEEEEECEETTT--T-EECSSSCCTT
T ss_pred             cccCCCCeEecCCCHHHHHHHhhccCCCceEEEEECCCCCCCCCEEEEEEECCEEEEEEEEEeCCC--C-EEEEccccCC
Confidence            45788899999999999999997533479999999986  68999999999999999999976543  2 27776     


Q ss_pred             CceecChHhhHHhhhcccCCC----------ccccccccc
Q psy10852         79 DKTFSDLPSLLAFYKVHYLDT----------SPLIKPATK  108 (563)
Q Consensus        79 ~~~F~sl~~Li~~y~~~~~~~----------~~L~~p~~~  108 (563)
                      +..|.||.+||+||+.+++..          +.|++|+..
T Consensus        95 ~~~F~sl~eLV~~y~~~~~~l~~~~~~~~~~~~L~~Pv~~  134 (141)
T 2eo6_A           95 EEYFGSVVEIVNSHQHNPLVLIDSQNNTKDSTRLKYAVKV  134 (141)
T ss_dssp             CCCBSSHHHHHHHHHHSCCCCCCSSSCCCCCCCCCCBCCC
T ss_pred             CCccCCHHHHHHHHhhCCccceecccCCCCceEeCcCccc
Confidence            589999999999999988753          456667654

>2dx0_A Phospholipase C, gamma 2; phosphoric diester hydrolase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Mus musculus}

Probab=99.85  E-value=1.5e-21  Score=170.69  Aligned_cols=102  Identities=25%  Similarity=0.445  Sum_probs=85.7

Q ss_pred             CCCCCCCccccCC-CHHHHHHHHcC-----CCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeC-
Q psy10852          6 DPHDRNSWYFGMM-TRQEAQAILLS-----EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-   78 (563)
Q Consensus         6 ~~~~~~~w~~g~i-~r~~ae~~L~~-----~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-   78 (563)
                      +.++.++||||.| +|++||++|+.     ...+|+||||+|++.+|.|+|||+.++.|+||+|.+..++ |..+|.+. 
T Consensus        17 ~~~~~~~WyhG~i~sR~eAe~lL~~~c~~~g~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g-g~~~~~l~~   95 (138)
T 2dx0_A           17 ELHFGEKWFHKKVESRTSAEKLLQEYCAETGAKDGTFLVRESETFPNDYTLSFWRSGRVQHCRIRSTMEN-GVMKYYLTD   95 (138)
T ss_dssp             GTTSCCTTBCTTCCCHHHHHHHHHHHHTTTTCCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEEEEET-TEEEEESST
T ss_pred             ccccCCCcccCCCCCHHHHHHHHHhhccccCCCCCEEEEEeCCCCCCCeEEEEEECCeEEEEEEEEecCC-CceEEEeCC
Confidence            5678899999999 89999999985     2567999999999889999999999999999999987543 32236664 


Q ss_pred             CceecChHhhHHhhhcccCC----Cccccccccc
Q psy10852         79 DKTFSDLPSLLAFYKVHYLD----TSPLIKPATK  108 (563)
Q Consensus        79 ~~~F~sl~~Li~~y~~~~~~----~~~L~~p~~~  108 (563)
                      +..|.||.+||+||+.+++.    .+.|..||++
T Consensus        96 ~~~F~sl~eLI~~y~~~~l~~~gl~~~L~~Pv~~  129 (138)
T 2dx0_A           96 NLTFNSIYALIQHYREAHLRCAEFELRLTDPVPN  129 (138)
T ss_dssp             TSCBSSHHHHHHHTTTSCCCCGGGSSCCCCBCC-
T ss_pred             CCcCCCHHHHHHHHhhCCCCCCCcccccCccCCC
Confidence            68999999999999999863    4678888876

>1wqu_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; SH2 domain, feline sarcoma oncogene, structural genomics; NMR {Homo sapiens} PDB: 2dcr_A

Probab=99.85  E-value=8e-22  Score=166.52  Aligned_cols=95  Identities=27%  Similarity=0.502  Sum_probs=82.6

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeCCceecC
Q psy10852          5 FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSD   84 (563)
Q Consensus         5 ~~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~s   84 (563)
                      .+.++.++||||.|+|++||++|+.   +|+||||+|++.+ .|+|||+.++.|+||+|...++     .|.+++..|.|
T Consensus        10 ~~~l~~~~WyhG~isR~eAe~lL~~---~G~FLVR~S~~~~-~y~LSv~~~~~v~H~~I~~~~g-----~~~~~~~~F~s   80 (114)
T 1wqu_A           10 QKPLHEQLWYHGAIPRAEVAELLVH---SGDFLVRESQGKQ-EYVLSVLWDGLPRHFIIQSLDN-----LYRLEGEGFPS   80 (114)
T ss_dssp             GSCGGGCTTEEESCCHHHHHTTCCS---TTEEEEEECSSSC-CEEEEEEETTEEEEEECEECSS-----SEESSSCCBSS
T ss_pred             ccccccCCcEeeCCCHHHHHHHhcc---CCeEEEEEcCCCC-CEEEEEEECCEEEEEEEEecCC-----EEEECCCCCCC
Confidence            3467788999999999999999974   7999999999866 9999999999999999987543     39999999999


Q ss_pred             hHhhHHhhhcccCC-----Cccccccccc
Q psy10852         85 LPSLLAFYKVHYLD-----TSPLIKPATK  108 (563)
Q Consensus        85 l~~Li~~y~~~~~~-----~~~L~~p~~~  108 (563)
                      |.+||+||+.+.+.     .+.|..||++
T Consensus        81 l~~LV~~y~~~~~~~~~~~~~~L~~Pv~r  109 (114)
T 1wqu_A           81 IPLLIDHLLSTQQPLTKKSGVVLHRAVPS  109 (114)
T ss_dssp             HHHHHHHHHHHCCCSCTTTCCCCCEECCS
T ss_pred             HHHHHHHHHHCCCCcCCCCCcEECcccCC
Confidence            99999999987442     5678888876

>2crh_A VAV proto-oncogene; oncoprotein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2ror_A* 2lct_A*

Probab=99.84  E-value=3.9e-21  Score=167.84  Aligned_cols=97  Identities=30%  Similarity=0.502  Sum_probs=83.5

Q ss_pred             CCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeC-CceecCh
Q psy10852          7 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDL   85 (563)
Q Consensus         7 ~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~sl   85 (563)
                      .++.++||||.|+|++||++|+.. .+|+||||+|++.+|.|+|||+.++.|+||+|+ ..++    .|.|. +..|.||
T Consensus        22 ~~~~~~WyhG~isR~eAe~lL~~~-~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~-~~~g----~~~l~~~~~F~sl   95 (138)
T 2crh_A           22 DLSVHLWYAGPMERAGAESILANR-SDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIM-TAEG----LYRITEKKAFRGL   95 (138)
T ss_dssp             CGGGSSSBCCSCCHHHHHHHTTTS-CTTEEEEECCSSTTCCCEEEEEETTEEEEEECE-EETT----EEESSTTCCBSSH
T ss_pred             CCCcCCcccCCCCHHHHHHHhcCC-CCCEEEEEECCCCCCCEEEEEEECCeEEEEEEE-eCCC----EEEECCCCccCCH
Confidence            456789999999999999999874 569999999998889999999999999999996 4444    48886 5899999


Q ss_pred             HhhHHhhhcccCC------Ccccccccccc
Q psy10852         86 PSLLAFYKVHYLD------TSPLIKPATKT  109 (563)
Q Consensus        86 ~~Li~~y~~~~~~------~~~L~~p~~~~  109 (563)
                      .+||+||+.+++.      .+.|+.||.++
T Consensus        96 ~eLV~~y~~~~l~~~~~~l~~~L~~Pv~~~  125 (138)
T 2crh_A           96 TELVEFYQQNSLKDCFKSLDTTLQFPFKEP  125 (138)
T ss_dssp             HHHHHHHTTSCGGGTCTTCCCCCCEESSCC
T ss_pred             HHHHHHHHhCccccccCCcCcccCCccCCC
Confidence            9999999998863      46788888773

>2kno_A Tensin-like C1 domain-containing phosphatase; SH2 domain, TENC1, solution structure, cell junctio membrane, hydrolase, membrane, metal-binding; NMR {Homo sapiens} PDB: 2l6k_A

Probab=99.84  E-value=2.8e-21  Score=167.23  Aligned_cols=97  Identities=29%  Similarity=0.474  Sum_probs=82.0

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEEC---------------CeEEEEEEEEecCC
Q psy10852          5 FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKEN---------------NKVSHYIINKITNT   69 (563)
Q Consensus         5 ~~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~---------------~~v~h~~I~~~~~~   69 (563)
                      ...++.++||||.|+|++||++|+.. .+|+||||+|++.+|.|+|||+..               +.|+||+|.+..++
T Consensus        14 ~~~~~~~~Wyhg~isR~eAe~lL~~~-~~G~FLVR~S~s~~g~y~LSv~~~~~~~~~~~~~g~~~~~~v~H~~I~~~~~g   92 (131)
T 2kno_A           14 RGSDTSKFWYKPHLSRDQAIALLKDK-DPGAFLIRDSHSFQGAYGLALKVATPPPSAQPWKGDPVEQLVRHFLIETGPKG   92 (131)
T ss_dssp             CCCCCHHHHBCTTCCHHHHHHHHTTS-CTTBEEEEECSSSTTEEEEEEECSCCSSSSSSCCSCHHHHHEEEEEEECCSSC
T ss_pred             ccccccCCceecCCCHHHHHHHhcCC-CCCeEEEecCCCCCCCEEEEEEeCCCCcccccccccccCCceEEEEEEECCCC
Confidence            34566779999999999999999764 469999999998899999999986               38999999987654


Q ss_pred             CcceEEEe----CCceecChHhhHHhhhcccCC-Ccccccccc
Q psy10852         70 EQQTCYKI----GDKTFSDLPSLLAFYKVHYLD-TSPLIKPAT  107 (563)
Q Consensus        70 ~~~~~~~~----~~~~F~sl~~Li~~y~~~~~~-~~~L~~p~~  107 (563)
                           |.|    .+..|.||.+||+||+.++++ .|.|..|+.
T Consensus        93 -----~~l~g~~~~~~F~SL~eLV~~y~~~~~~L~~~L~~P~~  130 (131)
T 2kno_A           93 -----VKIKGCPSEPYFGSLSALVSQHSISPISLPCCLRIPSK  130 (131)
T ss_dssp             -----CCEETCSSCCCCCSHHHHHHTTTTCCSSCSSCCBCSSC
T ss_pred             -----CEEecCCCCCccCCHHHHHHHHhhCCCCCCeECCCcCC
Confidence                 666    468999999999999999876 567777763

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.84  E-value=2.4e-20  Score=197.45  Aligned_cols=159  Identities=35%  Similarity=0.608  Sum_probs=129.7

Q ss_pred             ceeeeecccCCCCCCCCCcCCCCCEEEEEEe-cCCCeeEEeeCCCeeeEEecCceeecccccccccccccccCCCCCCCC
Q psy10852        110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSK-DEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVP  188 (563)
Q Consensus       110 ~~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~-~~~~ww~g~~~~g~~G~fP~~yv~~~~~~~~~~~~~~~~~~g~~~~~~  188 (563)
                      ...++|+|||.++.++||+|++||+|.|+++ .+++||.+++.+|++|+||+|||++.+.....                
T Consensus        11 ~~~~~aly~~~~~~~~el~~~~gd~i~v~~~~~~~~ww~~~~~~g~~G~~P~~yv~~~~~~~~~----------------   74 (450)
T 1k9a_A           11 GTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREGVKAG----------------   74 (450)
T ss_dssp             TCEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSTTEEEEECTTCCEEEEEGGGEEECCCCCCC----------------
T ss_pred             CCEEEECCCcCccCCCcCCCCCCCEEEEeeccCCCCceEEEECCCceeeechhccccccccccc----------------
Confidence            4469999999999999999999999999998 67899999977799999999999976421000                


Q ss_pred             CCCCCccccccccccCccceeeeeccccCCCCCCceeeccCCEEEEeeecCCCceeeeeCCceeeccccceeecCCCCCC
Q psy10852        189 QQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETM  268 (563)
Q Consensus       189 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~a~~~~eLsf~~Gd~v~V~~~~~~~W~~g~~~g~~G~~P~~~ve~~~~~~~~  268 (563)
                                                                                                      
T Consensus        75 --------------------------------------------------------------------------------   74 (450)
T 1k9a_A           75 --------------------------------------------------------------------------------   74 (450)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCccCCCCCCCCCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcce
Q psy10852        269 PFHSSMKMTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQT  348 (563)
Q Consensus       269 p~~~~~~~~~~~~~~~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~  348 (563)
                                  +..+..+||||.|+|.+|+.+|... .+|+||||.|++.+|.|+|++++++.++|++|......    
T Consensus        75 ------------~~~~~~~wyhg~i~r~~ae~~L~~~-~~G~FlvR~S~~~~g~~~Lsv~~~~~v~H~~I~~~~~~----  137 (450)
T 1k9a_A           75 ------------TKLSLMPWFHGKITREQAERLLYPP-ETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMYHASK----  137 (450)
T ss_dssp             ------------TTEESCTTBCTTCCHHHHHHHTCSC-CTTEEEEEECSSSTTSEEEEEECSSSEEEEEEEEETTE----
T ss_pred             ------------cccccccccccCcCHHHhhhhhccC-CCceEEEEecCCCCCceEEEEEeCCeeeEEEEEecCCc----
Confidence                        0112348999999999999999753 45999999999999999999999999999999665433    


Q ss_pred             eEEeC-CcccCChhhHHhhhhcccCCC-Cccccccc
Q psy10852        349 CYKIG-DKTFSDLPSLLAFYKVHYLDT-SPLIKPAT  382 (563)
Q Consensus       349 ~~~i~-~~~f~sl~~lv~~y~~~~~~~-~~l~~P~~  382 (563)
                       |.+. ...|.++.+|++||....... +.+..|+.
T Consensus       138 -~~i~~~~~F~sl~eLv~~y~~~~~~~~~~l~~~~~  172 (450)
T 1k9a_A          138 -LSIDEEVYFENLMQLVEHYTTDADGLCTRLIKPKV  172 (450)
T ss_dssp             -EESSSSSCBSSHHHHHHHHHHCCTTSSSCCCEECC
T ss_pred             -eEeccccccccHHHHHhhhcccccchhhhcccccc
Confidence             7776 489999999999998766543 33445543

>2el8_A Signal-transducing adaptor protein 2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics; NMR {Homo sapiens}

Probab=99.84  E-value=1.8e-21  Score=165.23  Aligned_cols=89  Identities=20%  Similarity=0.330  Sum_probs=77.2

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEE----CCeEEEEEEEEecCCCcceEEEeC-Cc
Q psy10852          6 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKE----NNKVSHYIINKITNTEQQTCYKIG-DK   80 (563)
Q Consensus         6 ~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~----~~~v~h~~I~~~~~~~~~~~~~~~-~~   80 (563)
                      ..++.++||||.|+|++||++|.....+|+||||+|++.+|.|+|||+.    ++.|+||+|.+ .++    .|.+. +.
T Consensus        16 r~~~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~v~H~~I~~-~~g----~~~i~~~~   90 (118)
T 2el8_A           16 RRALETPSCFLKVSRLEAQLLLERYPECGNLLLRPSGDGADGVSVTTRQMHNGTHVVRHYKVKR-EGP----KYVIDVEQ   90 (118)
T ss_dssp             CCCSSSCTTCCCCCHHHHHHHHHHSSTTCSBEEEECCSSSSSEEEEECCCBTTBCCCEEECBCC-BTT----BCCBSSSS
T ss_pred             ccccCCCceecCCCHHHHHHHHhhCCCCcEEEEeeCCCCCCceEEEEEEecCCCCcEEEEEEEE-cCC----EEEEeCCC
Confidence            4567889999999999999999764467999999999989999999999    89999999998 333    37775 47


Q ss_pred             ee--cChHhhHHhhhcccCCC
Q psy10852         81 TF--SDLPSLLAFYKVHYLDT   99 (563)
Q Consensus        81 ~F--~sl~~Li~~y~~~~~~~   99 (563)
                      .|  +||.+||+||+.++++.
T Consensus        91 ~F~~~sL~eLV~~y~~~~~gl  111 (118)
T 2el8_A           91 PFSCTSLDAVVNYFVSHTKKA  111 (118)
T ss_dssp             CCCCSSHHHHHHHHHHHSSSC
T ss_pred             eECCCCHHHHHHHHhhCCCCC
Confidence            89  99999999999998763

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.84  E-value=1.7e-20  Score=202.86  Aligned_cols=153  Identities=27%  Similarity=0.478  Sum_probs=125.9

Q ss_pred             eeeeeccccCCCCCCceeeccCCEEEEeeecCCCceeeee--CCceeeccccceeecCCCCCCCCCCCCCccCCCCCCCC
Q psy10852        208 ARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIPTNETMPFHSSMKMTGTFDPHDR  285 (563)
Q Consensus       208 ~~~~~~~~~~a~~~~eLsf~~Gd~v~V~~~~~~~W~~g~~--~g~~G~~P~~~ve~~~~~~~~p~~~~~~~~~~~~~~~~  285 (563)
                      ..+++.|.+.+..++||+|++||+|.|+++.+++||+|+.  +|+.|+||+|||+....                  .+.
T Consensus        86 ~~~~alyd~~~~~~~el~~~~gd~i~v~~~~~~~ww~~~~~~~g~~G~~P~~yv~~~~~------------------l~~  147 (535)
T 2h8h_A           86 TTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDS------------------IQA  147 (535)
T ss_dssp             -CEEESSCBCCCSSSBCCBCTTCEEEEEECSSSSEEEEEETTTCCEEEEEGGGEEETTS------------------GGG
T ss_pred             cEEEEccccCCcCCCcCCcCCCCEEEEEEecCCCceEEEECCCCcceEecchhhccccc------------------ccc
Confidence            3455556668889999999999999999999999999998  89999999999998642                  233


Q ss_pred             CCccccccCHHHHHHHHhcC-CCCCcEEEEecCCCCcceEEEEEe-----CCeeEEEEEeeecCCCcceeEEeC-CcccC
Q psy10852        286 NSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKITNTEQQTCYKIG-DKTFS  358 (563)
Q Consensus       286 ~~w~~g~~sr~~A~~~l~~~-~~~G~FlvR~S~~~~g~~~ls~~~-----~~~v~h~~I~~~~~~~~~~~~~i~-~~~f~  358 (563)
                      .+||||.|+|.+|+.+|... +.+|+||||.|+..+|.|+|+++.     +..++||+|...+++    +|++. ...|.
T Consensus       148 ~~wy~g~i~r~~ae~~L~~~~~~~G~FLvR~S~~~~g~y~lsv~~~~~~~~~~v~h~~I~~~~~g----~~~i~~~~~F~  223 (535)
T 2h8h_A          148 EEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSG----GFYITSRTQFN  223 (535)
T ss_dssp             STTBCCSCCHHHHHHHHTCTTCCTTEEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEBC-CCS----CEEEETTEEES
T ss_pred             cceeccccCHHHHHHHhccCCCCCCeEEEEecCCCCCcEEEEEEeeccCCCCceEEEEEEEcCCC----cEEeecccccc
Confidence            48999999999999999875 567999999999999999999996     568999999986543    26665 58899


Q ss_pred             ChhhHHhhhhcccCCCC-ccccccc
Q psy10852        359 DLPSLLAFYKVHYLDTS-PLIKPAT  382 (563)
Q Consensus       359 sl~~lv~~y~~~~~~~~-~l~~P~~  382 (563)
                      ++.+||+||+.+....+ .+..+++
T Consensus       224 SL~eLv~~y~~~~~~~~~~l~~~~~  248 (535)
T 2h8h_A          224 SLQQLVAYYSKHADGLCHRLTTVCP  248 (535)
T ss_dssp             SHHHHHHHHHHCCTTSSSCCCEECC
T ss_pred             ChHHhheeeccccCccccccccccc
Confidence            99999999988765543 3444443

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.83  E-value=2.5e-20  Score=197.48  Aligned_cols=152  Identities=28%  Similarity=0.482  Sum_probs=126.8

Q ss_pred             eeeeccccCCCCCCceeeccCCEEEEeeecCCCceeeee--CCceeeccccceeecCCCCCCCCCCCCCccCCCCCCCCC
Q psy10852        209 RVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIPTNETMPFHSSMKMTGTFDPHDRN  286 (563)
Q Consensus       209 ~~~~~~~~~a~~~~eLsf~~Gd~v~V~~~~~~~W~~g~~--~g~~G~~P~~~ve~~~~~~~~p~~~~~~~~~~~~~~~~~  286 (563)
                      .+++.|.+.+..++||+|++||+|.|+++.++|||.|+.  +|+.|+||+|||+....                  .+..
T Consensus         4 ~~~al~~~~~~~~~el~~~~gd~~~v~~~~~~~ww~~~~~~~g~~G~~P~~yv~~~~~------------------le~~   65 (452)
T 1fmk_A            4 TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDS------------------IQAE   65 (452)
T ss_dssp             EEEESSCBCCCSSSBCCBCTTCEEEESCCCSSSEEEEEETTTCCEEEEEGGGEEETTS------------------GGGS
T ss_pred             EEEECCccCCCCCCCCCccCCCEEEEeccCCCCceEEEEcCCCcccccCccccccccc------------------cccc
Confidence            345556667889999999999999999999999999998  89999999999998642                  2234


Q ss_pred             CccccccCHHHHHHHHhcC-CCCCcEEEEecCCCCcceEEEEEe-----CCeeEEEEEeeecCCCcceeEEeCC-cccCC
Q psy10852        287 SWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKITNTEQQTCYKIGD-KTFSD  359 (563)
Q Consensus       287 ~w~~g~~sr~~A~~~l~~~-~~~G~FlvR~S~~~~g~~~ls~~~-----~~~v~h~~I~~~~~~~~~~~~~i~~-~~f~s  359 (563)
                      +||||.++|.+|+.+|... +.+|+||||.|++.+|.|+|+++.     ++.++||+|...+++    +|++.. ..|.|
T Consensus        66 ~w~~g~~~r~~ae~~L~~~~~~~G~FLvR~s~~~~g~y~lsv~~~~~~~~~~v~h~~I~~~~~g----~~~~~~~~~F~S  141 (452)
T 1fmk_A           66 EWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSG----GFYITSRTQFNS  141 (452)
T ss_dssp             TTEEETCCHHHHHHHHTCTTSCTTEEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEEECTTS----CEESSTTSEESS
T ss_pred             ccccCCccHHHHHHHhccCCCCCceEEEEeCCCCCCceEEEEEeeccCCCCcEEEEEEEEcCCC----CEEEecCcccCC
Confidence            8999999999999999875 567999999999999999999996     568999999986544    377764 88999


Q ss_pred             hhhHHhhhhcccCCCC-ccccccc
Q psy10852        360 LPSLLAFYKVHYLDTS-PLIKPAT  382 (563)
Q Consensus       360 l~~lv~~y~~~~~~~~-~l~~P~~  382 (563)
                      +.+||+||+.+....+ .+..|++
T Consensus       142 l~~Li~~y~~~~~~l~~~l~~~~~  165 (452)
T 1fmk_A          142 LQQLVAYYSKHADGLCHRLTTVCP  165 (452)
T ss_dssp             HHHHHHHHTTCCTTSSSCCCEECC
T ss_pred             HHHHHHHhhhccccchhhcccccc
Confidence            9999999987665542 3455544

>2c9w_A Suppressor of cytokine signaling 2; growth regulation, SH2 domain, signal transduction inhibitor nuclear protein; 1.9A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1

Probab=99.83  E-value=3.5e-21  Score=174.55  Aligned_cols=98  Identities=26%  Similarity=0.401  Sum_probs=82.9

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeCC-----
Q psy10852          5 FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD-----   79 (563)
Q Consensus         5 ~~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~-----   79 (563)
                      ++.++.++||||.|+|++||++|+. ..+|+||||+|++.+|.|+|||+.++.|+||+|.+. ++    .|.+++     
T Consensus        11 ~~~l~~~~WyhG~isR~eAe~lL~~-~~~G~FLVR~S~~~~~~~~LSv~~~~~v~H~rI~~~-~g----~~~l~~~~~~~   84 (169)
T 2c9w_A           11 LRELGQTGWYWGSMTVNEAKEKLKE-APEGTFLIRDSSHSDYLLTISVKTSAGPTNLRIEYQ-DG----KFRLDSIICVK   84 (169)
T ss_dssp             HHHHHHTSCBCTTCCHHHHHHHHTT-SCTTCEEEEECCSTTCSEEEEEEETTEEEEEEEEEE-TT----EEEECTTTTTG
T ss_pred             HHhcccCCccccCCCHHHHHHHcCC-CCCcEEEEecCCCCCCeEEEEEEECCeeEEEEEEEe-CC----EEEEccccCcc
Confidence            3456678999999999999999976 456999999999888999999999999999999985 33    488876     


Q ss_pred             ---ceecChHhhHHhhhcccCC-------------Cccccccccc
Q psy10852         80 ---KTFSDLPSLLAFYKVHYLD-------------TSPLIKPATK  108 (563)
Q Consensus        80 ---~~F~sl~~Li~~y~~~~~~-------------~~~L~~p~~~  108 (563)
                         ..|+||.+||+||+.+++.             .+.|..|+.+
T Consensus        85 ~~~~~F~sl~eLI~~y~~~~~~~~~~~~~~~~~~~~~~L~~P~~~  129 (169)
T 2c9w_A           85 SKLKQFDSVVHLIDYYVQMCKDKRTGPEAPRNGTVHLYLTKPLYT  129 (169)
T ss_dssp             GGCCCBSCHHHHHHHHHHHTC--------------CCCCCCBCCS
T ss_pred             ccCCCCCCHHHHHHHHHhCcCCCcccccCCCCcCccceecCcccc
Confidence               8899999999999988764             3456777765

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.82  E-value=1e-19  Score=192.91  Aligned_cols=145  Identities=32%  Similarity=0.631  Sum_probs=123.9

Q ss_pred             eeeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEee-CCCeeeEEecCceeecccccccccccccccCCCCCCCCC
Q psy10852        111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQ  189 (563)
Q Consensus       111 ~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~-~~g~~G~fP~~yv~~~~~~~~~~~~~~~~~~g~~~~~~~  189 (563)
                      ..++|+|||.+++++||+|++||+|.|+++ +++||.|++ .+|+.|+||+|||+..+.                     
T Consensus         9 ~~~~al~~~~~~~~~el~~~~gd~~~v~~~-~~~W~~~~~~~~g~~G~~P~~yv~~~~~---------------------   66 (454)
T 1qcf_A            9 IIVVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVDS---------------------   66 (454)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEC-CTTEEEEEETTTCCEEEEEGGGEEETTC---------------------
T ss_pred             eEEEECcccCCcCCCcCcccCCCEEEEEec-CCCCeEEEECCCCceEEecchhcccccc---------------------
Confidence            468999999999999999999999999998 478999998 689999999999986531                     


Q ss_pred             CCCCccccccccccCccceeeeeccccCCCCCCceeeccCCEEEEeeecCCCceeeeeCCceeeccccceeecCCCCCCC
Q psy10852        190 QQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETMP  269 (563)
Q Consensus       190 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~a~~~~eLsf~~Gd~v~V~~~~~~~W~~g~~~g~~G~~P~~~ve~~~~~~~~p  269 (563)
                                                                                                      
T Consensus        67 --------------------------------------------------------------------------------   66 (454)
T 1qcf_A           67 --------------------------------------------------------------------------------   66 (454)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCccCCCCCCCCCCccccccCHHHHHHHHhc-CCCCCcEEEEecCCCCcceEEEEEe-----CCeeEEEEEeeecC
Q psy10852        270 FHSSMKMTGTFDPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKITN  343 (563)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~w~~g~~sr~~A~~~l~~-~~~~G~FlvR~S~~~~g~~~ls~~~-----~~~v~h~~I~~~~~  343 (563)
                                   .+..+||||.++|.+|+.+|.. +..+|+||||.|++.+|.|+|+++.     ++.++||+|...++
T Consensus        67 -------------le~~~W~~g~i~r~~ae~~L~~~~~~~G~FLvR~s~~~~g~y~lsv~~~~~~~~~~v~H~~I~~~~~  133 (454)
T 1qcf_A           67 -------------LETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDN  133 (454)
T ss_dssp             -------------GGGSTTEETTCCHHHHHHHHHSTTCCTTCEEEEECSSSTTSEEEEEEEEETTTEEEEEEEEEEECTT
T ss_pred             -------------cccccccccccchhhhhhhhhcCCCCCceEEEEECcCCCCeEEEEEEecccCCCCceEEEEEEEcCC
Confidence                         0123899999999999999975 4678999999999999999999998     67899999998654


Q ss_pred             CCcceeEEeCC-cccCChhhHHhhhhcccCCC
Q psy10852        344 TEQQTCYKIGD-KTFSDLPSLLAFYKVHYLDT  374 (563)
Q Consensus       344 ~~~~~~~~i~~-~~f~sl~~lv~~y~~~~~~~  374 (563)
                      +    +|++.. ..|.++.+|++||+......
T Consensus       134 g----~~~i~~~~~F~sl~eLv~~y~~~~~~l  161 (454)
T 1qcf_A          134 G----GFYISPRSTFSTLQELVDHYKKGNDGL  161 (454)
T ss_dssp             S----CEESSSSSCBSSHHHHHHHHTSSCTTS
T ss_pred             C----cEEEeCccccCCHHHHHHHHHhccCCc
Confidence            4    377764 79999999999998765443

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A*

Probab=99.82  E-value=5.1e-20  Score=168.65  Aligned_cols=100  Identities=27%  Similarity=0.550  Sum_probs=86.0

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHcCC-CCCCeEEEEecCCCCcceEEEEEE-----CCeEEEEEEEEecCCCcceEEEeC
Q psy10852          5 FDPHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKITNTEQQTCYKIG   78 (563)
Q Consensus         5 ~~~~~~~~w~~g~i~r~~ae~~L~~~-~~~G~FLvR~s~~~~~~~~lsv~~-----~~~v~h~~I~~~~~~~~~~~~~~~   78 (563)
                      ...++.++||||.|+|++||++|+.. ..+|+||||+|++.+|.|+|||+.     ++.|+||+|.+..++    .|.+.
T Consensus        68 ~~~l~~~~w~~g~isr~~ae~lL~~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~~v~H~~I~~~~~g----~~~~~  143 (175)
T 4d8k_A           68 ANSLEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNG----GFYIS  143 (175)
T ss_dssp             TTCSTTCTTBCSSCCHHHHHHHHHSTTCCTTCEEEEECSSSTTCEEEEEEEECTTSCEEEEEEEEEECSSS----CEESS
T ss_pred             cccccccceecCcccHHHHHHHHhcCCCCCCEEEEEECCCCCCeEEEEEEeCcccCCCceEEEEEEECCCC----CEEEC
Confidence            34577889999999999999999873 457999999999889999999998     789999999986654    37776


Q ss_pred             C-ceecChHhhHHhhhcccCC-Cccccccccc
Q psy10852         79 D-KTFSDLPSLLAFYKVHYLD-TSPLIKPATK  108 (563)
Q Consensus        79 ~-~~F~sl~~Li~~y~~~~~~-~~~L~~p~~~  108 (563)
                      + ..|.||.+||+||+.++.+ .+.|..||++
T Consensus       144 ~~~~F~sl~~LV~~y~~~~~gl~~~L~~Pc~~  175 (175)
T 4d8k_A          144 PRITFPGLHELVRHYTNASDGLCTRLSRPCQT  175 (175)
T ss_dssp             TTSEESSHHHHHHHHHHCCTTSSSCCCSBCCC
T ss_pred             CCCccCCHHHHHHHHhhCCCCCcccCCCcCCC
Confidence            5 8999999999999998876 6778888863

>2vif_A Suppressor of cytokine signalling 6; growth regulation, signal transduction inhibitor, KIT regula phosphotyrosine, signaling protein; HET: PTR; 1.45A {Homo sapiens}

Probab=99.82  E-value=1.2e-20  Score=165.86  Aligned_cols=85  Identities=25%  Similarity=0.321  Sum_probs=75.5

Q ss_pred             CCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeC----Ccee
Q psy10852          7 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG----DKTF   82 (563)
Q Consensus         7 ~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~----~~~F   82 (563)
                      .++.++||||.|+|++||++|++. .+|+||||+|++.+|.|+|||+.++.|+||+|.+. ++    .|.++    +..|
T Consensus        20 ~l~~~~WyhG~isR~eAe~lL~~~-~~G~FLVR~S~~~~~~~~LSv~~~~~v~H~~I~~~-~g----~~~l~~~~~~~~F   93 (141)
T 2vif_A           20 KLAKQGWYWGPITRWEAEGKLANV-PDGSFLVRDSSDDRYLLSLSFRSHGKTLHTRIEHS-NG----RFSFYEQPDVEGH   93 (141)
T ss_dssp             HHHHHTCBCCSCCHHHHHHHTTTS-CTTCEEEEECSSTTCSEEEEEEETTEEEEEEEEEE-TT----EEEETTCCSCCCB
T ss_pred             hhccCCCcccCCCHHHHHHHhcCC-CCceEEEEecCCCCCCEEEEEEECCEEEEEEEEEE-CC----EEEEeecCCCCcc
Confidence            455679999999999999999775 46999999999988999999999999999999987 33    48887    6899


Q ss_pred             cChHhhHHhhhcccC
Q psy10852         83 SDLPSLLAFYKVHYL   97 (563)
Q Consensus        83 ~sl~~Li~~y~~~~~   97 (563)
                      .||.+||+||+.+++
T Consensus        94 ~sl~eLI~~y~~~~~  108 (141)
T 2vif_A           94 TSIVDLIEHSIGDSE  108 (141)
T ss_dssp             SSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhhCCC
Confidence            999999999999874

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.81  E-value=2e-19  Score=192.69  Aligned_cols=151  Identities=24%  Similarity=0.350  Sum_probs=125.2

Q ss_pred             eeeccccCCCCCCceeeccCCEEEEeeec-CCCceeeeeCCceeeccccceeecCCCCCCCCCCCCCccCCCCCCCCCCc
Q psy10852        210 VKQVRVPNAYDKTALKLEIGDIIKVTKTN-INGQWEGELNGKTGHFPFTHVEFIPTNETMPFHSSMKMTGTFDPHDRNSW  288 (563)
Q Consensus       210 ~~~~~~~~a~~~~eLsf~~Gd~v~V~~~~-~~~W~~g~~~g~~G~~P~~~ve~~~~~~~~p~~~~~~~~~~~~~~~~~~w  288 (563)
                      +++.|.+.+..++||+|++||+|.|+++. +++||.++.+|+.|+||+|||+.+..                  .+..+|
T Consensus        46 ~~alyd~~~~~~~els~~~gd~~~v~~~~~~~~w~~~~~~~~~G~~P~~yv~~~~~------------------le~~~w  107 (495)
T 1opk_A           46 FVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVNS------------------LEKHSW  107 (495)
T ss_dssp             EEESSCBCCCSTTBCCBCTTCEEEEEEECTTSSEEEEECSSCEEEEEGGGEEESSS------------------GGGSTT
T ss_pred             EEEeCCcCCCCCCCCCccCCCEEEEeecCCCCCceeeeecCCcceecccccccccc------------------ccchhh
Confidence            44555557888999999999999999987 78999999999999999999998753                  234599


Q ss_pred             cccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeC-CcccCChhhHHhhh
Q psy10852        289 YFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDLPSLLAFY  367 (563)
Q Consensus       289 ~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~-~~~f~sl~~lv~~y  367 (563)
                      |||.++|.+|+.+|.. ..+|+||||.|++.+|.|+||++.++.++||+|...+++    .+++. ...|.++.+||.||
T Consensus       108 yhg~i~r~~ae~ll~~-~~~G~fLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~g----~~~~~~~~~F~sl~eLv~~~  182 (495)
T 1opk_A          108 YHGPVSRNAAEYLLSS-GINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDG----KLYVSSESRFNTLAELVHHH  182 (495)
T ss_dssp             EEEECCHHHHHHHGGG-CCTTEEEEEECSSSTTCEEEEEEETTEEEEEECEECTTS----CEESSTTSCBSSHHHHHHHH
T ss_pred             hccCCCHHHHHHHhhC-CCCceEEEEeCCCCCCceEEEEeeCCeEEEEEEEecCCC----ceEeccCccchhHHHHhhhh
Confidence            9999999999999976 456999999999999999999999999999999876544    26665 58899999999999


Q ss_pred             hcccCCC-Ccccccccc
Q psy10852        368 KVHYLDT-SPLIKPATK  383 (563)
Q Consensus       368 ~~~~~~~-~~l~~P~~~  383 (563)
                      ....... +.+..|+++
T Consensus       183 ~~~~~g~~~~l~~~~~~  199 (495)
T 1opk_A          183 STVADGLITTLHYPAPK  199 (495)
T ss_dssp             TTCCTTSSSCCCEECCC
T ss_pred             cccccccchhccccccc
Confidence            8765443 334455543

>2eo3_A CRK-like protein; phosphorylation, repeat, SH2 domain, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=1.1e-19  Score=152.91  Aligned_cols=109  Identities=51%  Similarity=0.872  Sum_probs=96.1

Q ss_pred             CCceeeccccceeecCCCCCCCCCCCCCccCCCCCCCCCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEE
Q psy10852        248 NGKTGHFPFTHVEFIPTNETMPFHSSMKMTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCV  327 (563)
Q Consensus       248 ~g~~G~~P~~~ve~~~~~~~~p~~~~~~~~~~~~~~~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~  327 (563)
                      .|+.|++|+||+...                      ...||||.|+|++|+++|. ...+|+||||.|++.+|.|+||+
T Consensus         3 ~g~~G~ip~n~v~~~----------------------~~~Wyhg~isR~~Ae~lL~-~~~~G~FLVR~S~~~~g~y~LSv   59 (111)
T 2eo3_A            3 SGSSGMSSARFDSSD----------------------RSAWYMGPVSRQEAQTRLQ-GQRHGMFLVRDSSTCPGDYVLSV   59 (111)
T ss_dssp             CCCCCSCSCCCCTTC----------------------HHHHEEESCCHHHHHHHHS-SCCTTCEEEEECSSSSSCEEEEE
T ss_pred             CCccccccccccccC----------------------CCCcccCCCCHHHHHHHhc-CCCCceEEEEeecCCCCCEEEEE
Confidence            578899999998432                      2489999999999999997 45679999999999999999999


Q ss_pred             EeCCeeEEEEEeeecCCCcceeEEeCCcccCChhhHHhhhhcccCCCCcccccccc
Q psy10852        328 KENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK  383 (563)
Q Consensus       328 ~~~~~v~h~~I~~~~~~~~~~~~~i~~~~f~sl~~lv~~y~~~~~~~~~l~~P~~~  383 (563)
                      +.++.++|++|....++    .|.+++..|+|+.+||+||+.+++..+.|..|+++
T Consensus        60 ~~~~~v~H~~I~~~~~g----~~~l~~~~F~sl~~LV~~y~~~~l~~~~L~~Pv~r  111 (111)
T 2eo3_A           60 SENSRVSHYIINSLPNR----RFKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAPR  111 (111)
T ss_dssp             EETTEEEEEEEEEETTT----EEEETTCCBSSHHHHHHHHTTSCSSSSCCCCBCCC
T ss_pred             EeCCeEEEEEEEEcCCC----CEEECCcccCCHHHHHHHHhhCCCCCccCCCcCcC
Confidence            99999999999986543    38888899999999999999999988889999874

>2bbu_A Suppressor of cytokine signaling 3; SH2 domain, extended SH2 subdomain, PEST motif, protein complex, cytokine regulator; HET: PTR; NMR {Mus musculus}

Probab=99.80  E-value=1.8e-20  Score=167.61  Aligned_cols=97  Identities=21%  Similarity=0.329  Sum_probs=81.8

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeCC------
Q psy10852          6 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD------   79 (563)
Q Consensus         6 ~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~------   79 (563)
                      +.++.++||||.|+|++||++|+. ..+|+||||+|++.+|.|+|||+.++.|+||+|.+. ++    .|.+.+      
T Consensus        18 ~~L~~~~WyhG~IsR~eAe~lL~~-~~~GtFLVR~S~s~~g~y~LSvr~~~~v~H~rI~~~-~g----~f~l~~~~~~~~   91 (164)
T 2bbu_A           18 RKLQESGFYWSAVTGGEANLLLSA-EPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQCE-GG----SFSLQSDPRSTQ   91 (164)
T ss_dssp             HHHHHTSCCCTTSCHHHHHHHHHH-SSTTCCEEEECSTTSCCEEEEECCTTCCEEEECEEE-TT----EEESSSCCCCCS
T ss_pred             hhhccCCccCCCCCHHHHHHHhcC-CCCCCEEEEECCCCCCCEEEEEEECCceEEEEEEeC-CC----eEEEecCccccc
Confidence            445678999999999999999976 446999999999889999999999999999999974 33    488864      


Q ss_pred             --ceecChHhhHHhhhcccCC---Cccccccccc
Q psy10852         80 --KTFSDLPSLLAFYKVHYLD---TSPLIKPATK  108 (563)
Q Consensus        80 --~~F~sl~~Li~~y~~~~~~---~~~L~~p~~~  108 (563)
                        ..|.||.+||+||+.+++.   .+.|..|.+.
T Consensus        92 ~~~~F~SL~eLV~~Y~~~~~~~~~~~~l~ep~~~  125 (164)
T 2bbu_A           92 PVPRFDCVLKLVHHYMPPPGTPSFSLPPTEPSSE  125 (164)
T ss_dssp             SCTTCCHHHHHHHHHSCCCSCSCCSSSCSSCCSS
T ss_pred             CCCccCCHHHHHHHHhhCCCCCCccccccCCCcc
Confidence              6999999999999999875   3556666554

>2izv_A Suppressor of cytokine signaling 4; signal transduction inhibitor, growth regulation, signal transduction, SH2 domain, nuclear protein; 2.55A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1

Probab=99.80  E-value=3.5e-20  Score=168.99  Aligned_cols=97  Identities=23%  Similarity=0.317  Sum_probs=82.5

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeCC-----c
Q psy10852          6 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD-----K   80 (563)
Q Consensus         6 ~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~-----~   80 (563)
                      ..++.++||||.|+|++||++|... .+|+||||+|++..+.|+||++.++.|+||+|...+ +    .|.+.+     .
T Consensus        29 ~~l~~~~WYhG~isR~eAE~lL~~~-~dGtFLVR~S~~~~~~lsLSvr~~~~v~H~rI~~~~-g----~f~l~~~~~~~~  102 (187)
T 2izv_A           29 LQINNNPCYWGVMDKYAAEALLEGK-PEGTFLLRDSAQEDYLFSVSFRRYSRSLHARIEQWN-H----NFSFDAHDPCVF  102 (187)
T ss_dssp             HHHHHCTTEEEECCHHHHHHHHTTC-CTTEEEEEECSSTTCSEEEEEEETTEEEEEECEEET-T----EEESCTTCTTSC
T ss_pred             hhcccCCccccCCCHHHHHHHhcCC-CCCcEEEEECCCCCceEEEEEeeCCeEEEEEEEECC-C----EEEEeccCCCcc
Confidence            3566789999999999999999764 469999999998677799999999999999999873 3    388864     2


Q ss_pred             eecChHhhHHhhhcccCCC---ccccccccc
Q psy10852         81 TFSDLPSLLAFYKVHYLDT---SPLIKPATK  108 (563)
Q Consensus        81 ~F~sl~~Li~~y~~~~~~~---~~L~~p~~~  108 (563)
                      .|.||.+||+||+.++++.   +.|+.||.+
T Consensus       103 ~F~SL~eLV~hY~~~~~~~~~~~~L~~Pv~r  133 (187)
T 2izv_A          103 HSPDITGLLEHYKDPSACMFFEPLLSTPLIR  133 (187)
T ss_dssp             CBSSHHHHHHHTCCGGGCCTTSCCCCEECCC
T ss_pred             ccCCHHHHHHHHHhccccccccccccccccc
Confidence            8999999999999988763   568888876

>4fbn_A 1-phosphatidylinositol 4,5-bisphosphate phosphodi gamma-1; SH2 domain, plcgamma specific array, interaction domain, FIB growth factor receptor 1; 2.40A {Homo sapiens} PDB: 4ey0_A* 3gqi_B* 2fci_A* 2pld_A* 2ple_A*

Probab=99.80  E-value=1.2e-19  Score=174.50  Aligned_cols=99  Identities=26%  Similarity=0.544  Sum_probs=87.4

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeCCceecC
Q psy10852          5 FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSD   84 (563)
Q Consensus         5 ~~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~s   84 (563)
                      .++++.++||||.|+|++||++|...+.+|+||||+|++ +|.|+||++.+++|+||+|.+.+.     .|.+++..|+|
T Consensus       116 ~~~~~~~~Wyhg~isr~~Ae~lL~~~~~~G~FLVR~s~~-~g~y~Lsv~~~~~v~H~~I~~~~~-----~~~~~~~~F~s  189 (246)
T 4fbn_A          116 TNAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNE-PNSYAISFRAEGKIKHCRVQQEGQ-----TVMLGNSEFDS  189 (246)
T ss_dssp             SCGGGGSTTEESSCCHHHHHHHHHTSCCTTEEEEEECSS-TTEEEEEEEETTEEEEEEEEEETT-----EEEETTEEESC
T ss_pred             cCCcccCCeeecCccHHHHHHHHhhCCCCCeEEEEecCC-CCCEEEEEEeCCCeEEEEEEeCCC-----EEEeCCCccCC
Confidence            456788999999999999999998766679999999865 899999999999999999997532     38889999999


Q ss_pred             hHhhHHhhhcccCC-Ccccccccccc
Q psy10852         85 LPSLLAFYKVHYLD-TSPLIKPATKT  109 (563)
Q Consensus        85 l~~Li~~y~~~~~~-~~~L~~p~~~~  109 (563)
                      |.+||+||+.+++. .+.|++||.+.
T Consensus       190 L~~Lv~~y~~~p~~~~~~L~~Pv~~~  215 (246)
T 4fbn_A          190 LVDLISYYEKHPLYRKMKLRYPINEE  215 (246)
T ss_dssp             HHHHHHHHHHSCSBTTBCCCEECSHH
T ss_pred             HHHHHHHhCcCCCCCCcCCCCcCCCc
Confidence            99999999999985 67889999763

>2hmh_A Suppressor of cytokine signaling 3; SOCS3, GP130, PTyr, peptide complex, cytokine regulator; HET: PTR; 2.00A {Mus musculus}

Probab=99.80  E-value=5.7e-20  Score=162.97  Aligned_cols=86  Identities=21%  Similarity=0.340  Sum_probs=74.5

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeCC------
Q psy10852          6 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD------   79 (563)
Q Consensus         6 ~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~------   79 (563)
                      +.++.++||||.|+|++||++|+. ..+|+||||+|++.+|.|+|||+.++.|+||+|.+.. +    .|.+.+      
T Consensus        29 ~~l~~~~WyhG~isR~eAe~lL~~-~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~rI~~~~-g----~f~l~~~~~~~~  102 (152)
T 2hmh_A           29 RKLQESGFYWSAVTGGEANLLLSA-EPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQXEG-G----SFSLQSDPRSTQ  102 (152)
T ss_dssp             HHHHHTSSEETTCCHHHHHHHHHT-SCTTEEEEEECCSTTCSEEEEEEETTEEEEEEEECGG-G----CBEECBCTTCSS
T ss_pred             hhhccCCCcCCCCCHHHHHHHhcC-CCCCcEEEEeCCCCCCcEEEEEEcCCceEEEEEEecC-C----EEEEeccccccc
Confidence            345668999999999999999986 4469999999998889999999999999999999832 2    277754      


Q ss_pred             --ceecChHhhHHhhhcccC
Q psy10852         80 --KTFSDLPSLLAFYKVHYL   97 (563)
Q Consensus        80 --~~F~sl~~Li~~y~~~~~   97 (563)
                        ..|.||.+||+||+.++.
T Consensus       103 ~~~~F~SL~eLV~~Y~~~~~  122 (152)
T 2hmh_A          103 PVPRFDXVLKLVHHYMPPQA  122 (152)
T ss_dssp             CCCCBSSHHHHHHHTCCCCC
T ss_pred             ccCccCCHHHHHHHHhhCcc
Confidence              899999999999998864

>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70, tyrosine kinase, transferase; HET: PTR; 1.90A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A

Probab=99.79  E-value=2.3e-19  Score=174.19  Aligned_cols=98  Identities=29%  Similarity=0.461  Sum_probs=85.3

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcCC-CCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeC-Cceec
Q psy10852          6 DPHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFS   83 (563)
Q Consensus         6 ~~~~~~~w~~g~i~r~~ae~~L~~~-~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~   83 (563)
                      ..++.++||||.|+|++||++|+.. ..+|+||||+| +.+|.|+|||+.++.|+||+|.+..+|    .|.+. +..|.
T Consensus       154 ~~l~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S-~~~g~~~LSv~~~~~v~H~~I~~~~~g----~~~~~~~~~F~  228 (254)
T 2oq1_A          154 TAHERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPR-KEQGTYALSLIYGKTVYHYLISQDKAG----KYCIPEGTKFD  228 (254)
T ss_dssp             HGGGGSTTBCSSCCHHHHHHHHHSSCCCTTEEEEEEC-SSTTEEEEEEEETTEEEEEEEEECTTS----CEESTTSCCBS
T ss_pred             cccCCCcccccCCCHHHHHHHHHhcCCCCceEEEEec-CCCCCEEEEEEECCeEEEEEEEEcCCC----CEEECCCceEC
Confidence            3567789999999999999999874 36799999999 679999999999999999999987655    38875 68999


Q ss_pred             ChHhhHHhhhcccCC-Cccccccccc
Q psy10852         84 DLPSLLAFYKVHYLD-TSPLIKPATK  108 (563)
Q Consensus        84 sl~~Li~~y~~~~~~-~~~L~~p~~~  108 (563)
                      ||.+||+||+.++++ .+.|..||++
T Consensus       229 sl~~LV~~y~~~~~~l~~~L~~p~~r  254 (254)
T 2oq1_A          229 TLWQLVEYLKLKADGLIYCLKEACPN  254 (254)
T ss_dssp             SHHHHHHHHHHCCTTSSSCCCSBCCC
T ss_pred             CHHHHHHHHHhCCCCCCeeCCccCcC
Confidence            999999999999876 5678888864

>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2 domain; HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1csy_A* 1csz_A*

Probab=99.79  E-value=2.5e-19  Score=173.90  Aligned_cols=98  Identities=33%  Similarity=0.557  Sum_probs=85.9

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcCC-CCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeC-Cceec
Q psy10852          6 DPHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFS   83 (563)
Q Consensus         6 ~~~~~~~w~~g~i~r~~ae~~L~~~-~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~   83 (563)
                      ..++.++||||.|+|++||++|+.. ..+|+||||+| +.+|.|+|||+.++.|+||+|.+..+|    .|.+. +..|.
T Consensus       153 ~~~~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S-~~~g~~~LSv~~~~~v~H~~I~~~~~g----~~~l~~~~~F~  227 (254)
T 1a81_A          153 TAHEKMPWFHGKISREESEQIVLIGSKTNGKFLIRAR-DNNGSYALCLLHEGKVLHYRIDKDKTG----KLSIPEGKKFD  227 (254)
T ss_dssp             TSGGGSTTEEEECCHHHHHHHHHSSCCCTTCEEEEEC-SSSSCEEEEEEETTEEEEEEEEECTTS----CEECTTSCCBS
T ss_pred             cccccCCccccCCCHHHHHHHHHhcCCCCceEEEEec-CCCCCEEEEEEECCEEEEEEEEEcCCC----CEEecCCcccC
Confidence            4677889999999999999999874 46799999999 679999999999999999999987655    38874 69999


Q ss_pred             ChHhhHHhhhcccCC-Cccccccccc
Q psy10852         84 DLPSLLAFYKVHYLD-TSPLIKPATK  108 (563)
Q Consensus        84 sl~~Li~~y~~~~~~-~~~L~~p~~~  108 (563)
                      ||.+||+||+.++++ .+.|..||++
T Consensus       228 sl~~LV~~y~~~~~~l~~~L~~p~~r  253 (254)
T 1a81_A          228 TLWQLVEHYSYKADGLLRVLTVPCQK  253 (254)
T ss_dssp             CHHHHHHHHTTCCTTSSSCCCCBCCC
T ss_pred             CHHHHHHHHHHCCCCCCeecCCcCCC
Confidence            999999999999876 5778888875

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}

Probab=99.78  E-value=3e-21  Score=195.63  Aligned_cols=153  Identities=16%  Similarity=0.274  Sum_probs=103.8

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCCcccccccccCCCCCCCCCCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQ  464 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.++|||.|+ .+|+.||||++||+.+.......... +.+......   
T Consensus       174 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~~~~~~~~-~~~~~~~~~---  248 (341)
T 2dyb_A          174 APRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGT-VRGATGIFPLSFVKILKDFPEEDDPT-NWLRCYYYE---  248 (341)
T ss_dssp             CCEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSSEEEEE-ETTEEEEEEGGGEEEEECCCCTTCCC-EEEEEEEEC---
T ss_pred             CcEEEEEEeeCCCCCCcCCccCCCEEEEEEecCCCEEEEE-ECCcEEEechHHeEEcCCCCcccccc-ccccccccC---
Confidence            3479999999999999999999999999999999999998 79999999999999886541111000 000000000   


Q ss_pred             CCCCcccccc--cccccccceEEeecCCCCC--CCCCCeec--cCCCEEEEEEeCCCCEEEEEeCCeee---eecCC-ce
Q psy10852        465 QQTTPVRKTH--LEVKLPAFARVKQVRVPNA--YDKTALKL--EIGDIIKVTKTNINGQWEGELNGKTG---HFPFT-HV  534 (563)
Q Consensus       465 ~~~~~~~~~~--~~~~~~~~~~~~~~y~~~~--~~~~eL~~--~~gd~i~v~~~~~~~w~~g~~~g~~G---~~P~~-~v  534 (563)
                      ..........  ........++++++|.++.  .++.+|+|  ++||+|.|+++.++|||+|+++|+.|   |||.+ ||
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~a~yd~~~~~~~~~e~eL~~~~~~GD~I~v~~~~d~gWw~Ge~~g~~G~~glfP~~~~v  328 (341)
T 2dyb_A          249 DTISTIKDIAVEEDLSSTPLLKDLLELTRREFQREDIALNYRDAEGDLVRLLSDEDVALMVRQARGLPSQKRLFPWKLHI  328 (341)
T ss_dssp             SSCEEEEEEEECSCTTCCCCHHHHHHHHHHHHTCSCEEEEEECSSSCEEECCSHHHHHHHHHHHTTSCCBTTBCSSCEEE
T ss_pred             CCCccccccccccccCCCcchhhhhhhhhhhcCCCcccccCCCCCCCEEEEeeecCCCEeEEEECCCCCCCceecceeEE
Confidence            0000000000  0111222456788887543  34556666  89999999999999999999876554   99999 99


Q ss_pred             EEcCCCCC
Q psy10852        535 EFIPTNET  542 (563)
Q Consensus       535 ~~~~~~~~  542 (563)
                      +.+++..+
T Consensus       329 ~~~~~~~~  336 (341)
T 2dyb_A          329 TQKDNYRV  336 (341)
T ss_dssp             EECC----
T ss_pred             EecCCcee
Confidence            98887654

>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=99.76  E-value=7.3e-19  Score=171.62  Aligned_cols=98  Identities=26%  Similarity=0.523  Sum_probs=83.0

Q ss_pred             CCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEe-CC-ce
Q psy10852          4 TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKI-GD-KT   81 (563)
Q Consensus         4 ~~~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~-~~-~~   81 (563)
                      ++..++.++||||.|+|++||.+|.. ..+|+||||.| +.+|.|+|||+.++.|+||+|.+.+++     |.+ +. ..
T Consensus       187 ~~~~l~~~~WyhG~IsR~eAE~lL~~-~~~GtFLVR~S-s~~g~y~LSv~~~~~V~H~rI~~~~~g-----~~~~~~~~~  259 (302)
T 2y3a_B          187 ALPHHEERTWYVGKINRTQAEEMLSG-KRDGTFLIRES-SQRGCYACSVVVDGDTKHCVIYRTATG-----FGFAEPYNL  259 (302)
T ss_dssp             -CGGGSSTTTBCCSCCHHHHHHHHTT-SCTTBEEBCCC-SSTTCEEEEEECSSSEEEEEEEEETTE-----EESBTTBCC
T ss_pred             ccccccCCCccCCCCCHHHHHHHhcC-CCCCcEEEEec-cCCCceEEEEEeCCeeEEEEEEECCCc-----eEEeCCCCC
Confidence            45678889999999999999999965 45699999999 779999999999999999999987654     544 33 78


Q ss_pred             ecChHhhHHhhhcccCC------Cccccccccc
Q psy10852         82 FSDLPSLLAFYKVHYLD------TSPLIKPATK  108 (563)
Q Consensus        82 F~sl~~Li~~y~~~~~~------~~~L~~p~~~  108 (563)
                      |.||.+||+||+.+++.      .+.|..||++
T Consensus       260 F~SL~eLV~~Y~~~~L~~~~~gl~~~L~~Pv~~  292 (302)
T 2y3a_B          260 YGSLKELVLHYQHASLVQHNDALTVTLAHPVRA  292 (302)
T ss_dssp             CSSHHHHHHTTSSSCSTTTCSSCCCCCSBCSCC
T ss_pred             CCCHHHHHHHHHhCCccccCCCCceeeCCccCC
Confidence            99999999999997653      4678888876

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.70  E-value=3.2e-17  Score=180.47  Aligned_cols=99  Identities=32%  Similarity=0.553  Sum_probs=86.8

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHcCC-CCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeCC-cee
Q psy10852          5 FDPHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD-KTF   82 (563)
Q Consensus         5 ~~~~~~~~w~~g~i~r~~ae~~L~~~-~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~-~~F   82 (563)
                      ...++.++||||.|+|++||++|... ..+|+||||+| +.+|.|+|||+.++.|+||+|.+..++    .|.+.+ ..|
T Consensus       160 ~~~~~~~~Wy~g~isr~~ae~~L~~~~~~~G~FLvR~s-~~~g~y~lsv~~~~~v~h~~i~~~~~g----~~~~~~~~~F  234 (635)
T 4fl3_A          160 TTAHEKMPWFHGKISREESEQIVLIGSKTNGKFLIRAR-DNNGSYALCLLHEGKVLHYRIDKDKTG----KLSIPEGKKF  234 (635)
T ss_dssp             TSCGGGSTTBCCSCCHHHHHHHHHSSSCCTTCEEEEES-SSSSCEEEEEEETTEEEEEEEEECTTS----CEESTTCCCB
T ss_pred             ccccccCCceeccCCHHHHHHHHHcCCCCCceEEEEec-CCCCCEEEEEEECCEEEEEEEEECCCC----CEEeCCCCcc
Confidence            35788899999999999999999873 45799999999 458999999999999999999886655    488865 899


Q ss_pred             cChHhhHHhhhcccCC-Cccccccccc
Q psy10852         83 SDLPSLLAFYKVHYLD-TSPLIKPATK  108 (563)
Q Consensus        83 ~sl~~Li~~y~~~~~~-~~~L~~p~~~  108 (563)
                      .||.+||+||+.++++ .+.|..||++
T Consensus       235 ~sl~~Lv~~y~~~~~~l~~~L~~p~~~  261 (635)
T 4fl3_A          235 DTLWQLVEHYSYKADGLLRVLTVPCQK  261 (635)
T ss_dssp             SSHHHHHHHHTTCCTTSSSCCCSBCCC
T ss_pred             CCHHHHHHHhhhCCCCCccccCccCcC
Confidence            9999999999999886 5678999987

>2dly_A FYN-related kinase; BRK family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.69  E-value=7.9e-17  Score=137.53  Aligned_cols=95  Identities=32%  Similarity=0.602  Sum_probs=82.0

Q ss_pred             CCCccccccCHHHHHHHHhc-CCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeC-CcccCChhh
Q psy10852        285 RNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDLPS  362 (563)
Q Consensus       285 ~~~w~~g~~sr~~A~~~l~~-~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~-~~~f~sl~~  362 (563)
                      ...||||.|+|.+|+.+|.. +..+|+||||.|++.+|.|+||++.++.++||+|....++    +|++. ...|+|+.+
T Consensus        15 ~~~WyhG~isR~eAe~lL~~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g----~~~l~~~~~F~sl~e   90 (121)
T 2dly_A           15 AEPWFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLDEGVVKHYRIRRLDEG----GFFLTRRKVFSTLNE   90 (121)
T ss_dssp             GCSSBCSSCCHHHHHHHHTSSSCCTTCEEEEECSSSSSCEEEEEESSSCEEEEEEEECSSS----CEEEETTEEESSHHH
T ss_pred             cCCccccCCCHHHHHHHHhcCCCCCCEEEEEcCCCCCCceEEEEEECCeEEEEEEEEcCCC----CEEECCCCccCCHHH
Confidence            45999999999999999986 4678999999999999999999999999999999985443    27775 589999999


Q ss_pred             HHhhhhcccCCC-Ccccccccc
Q psy10852        363 LLAFYKVHYLDT-SPLIKPATK  383 (563)
Q Consensus       363 lv~~y~~~~~~~-~~l~~P~~~  383 (563)
                      ||+||+.+.+.. +.|..|+++
T Consensus        91 LV~~y~~~~~~l~~~L~~P~~~  112 (121)
T 2dly_A           91 FVNYYTTTSDGLCVKLEKPCLK  112 (121)
T ss_dssp             HHHHHTTCCSSSSSCCCSBCCC
T ss_pred             HHHHHhhCCCCCceeCCeecCC
Confidence            999999988654 567888765

>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=99.69  E-value=1.1e-19  Score=177.44  Aligned_cols=175  Identities=18%  Similarity=0.278  Sum_probs=118.8

Q ss_pred             ceeeeecccCCCCCCCCCcCCCCCEEEE---EEecCCCeeEEeeCCCeeeEEecCceeecccccccccccccccCCCCCC
Q psy10852        110 IEKVIAKYDFDGNDPDDLPFKKNDILIV---VSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHH  186 (563)
Q Consensus       110 ~~~~~a~~d~~~~~~~eLs~~~Gd~i~v---l~~~~~~ww~g~~~~g~~G~fP~~yv~~~~~~~~~~~~~~~~~~g~~~~  186 (563)
                      ..+++|+++|.++..++|+|++||++.|   +...+++||..++.+++.                               
T Consensus       103 ~~rl~aL~~~~~~~~~eLsf~kgd~~~ier~ln~~~pdw~~l~k~rd~~-------------------------------  151 (302)
T 2y3a_B          103 KSRIAEIHESRTKLEQDLRAQASDNREIDKRMNSLKPDLMQLRKIRDQY-------------------------------  151 (302)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTC-------------------------------
T ss_pred             HHHHHHHHhhhhcchhhhhhhhhHHHhHHhhhccCChHHHHHhhcccch-------------------------------
Confidence            3468999999999999999999999999   666778888776332221                               


Q ss_pred             CCCCCCCccccccccccCccceeeeeccccCCCCCCceeeccCCEEEEeeecCCCceeeee--CCceeeccc--cceeec
Q psy10852        187 VPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPF--THVEFI  262 (563)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~a~~~~eLsf~~Gd~v~V~~~~~~~W~~g~~--~g~~G~~P~--~~ve~~  262 (563)
                                                                           ..||.+..  .+..|.+|.  +++...
T Consensus       152 -----------------------------------------------------~~wl~~~gl~~~~~~~~~~~~~~~~~~  178 (302)
T 2y3a_B          152 -----------------------------------------------------LVWLTQKGARQRKINEWLGIKNETEDQ  178 (302)
T ss_dssp             -----------------------------------------------------CSCC-----------------------
T ss_pred             -----------------------------------------------------hHHHHhcCCCcccccccccccCCCCCc
Confidence                                                                 23554432  334333332  232211


Q ss_pred             CCCCCCCCCCCCCccCCCCCCCCCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeec
Q psy10852        263 PTNETMPFHSSMKMTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKIT  342 (563)
Q Consensus       263 ~~~~~~p~~~~~~~~~~~~~~~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~  342 (563)
                      ..        ....+..+..+...+||||.|+|.+|+.+|. ...+|+||||.| +.+|.|+||++.++.|+||+|...+
T Consensus       179 ~~--------l~~~~~~~~~l~~~~WyhG~IsR~eAE~lL~-~~~~GtFLVR~S-s~~g~y~LSv~~~~~V~H~rI~~~~  248 (302)
T 2y3a_B          179 YS--------LMEDEDALPHHEERTWYVGKINRTQAEEMLS-GKRDGTFLIRES-SQRGCYACSVVVDGDTKHCVIYRTA  248 (302)
T ss_dssp             -----------------CGGGSSTTTBCCSCCHHHHHHHHT-TSCTTBEEBCCC-SSTTCEEEEEECSSSEEEEEEEEET
T ss_pred             cc--------ccccccccccccCCCccCCCCCHHHHHHHhc-CCCCCcEEEEec-cCCCceEEEEEeCCeeEEEEEEECC
Confidence            00        0000112234556799999999999999996 457799999999 8899999999999999999999876


Q ss_pred             CCCcceeEEeCC--cccCChhhHHhhhhcccCC------CCcccccccc
Q psy10852        343 NTEQQTCYKIGD--KTFSDLPSLLAFYKVHYLD------TSPLIKPATK  383 (563)
Q Consensus       343 ~~~~~~~~~i~~--~~f~sl~~lv~~y~~~~~~------~~~l~~P~~~  383 (563)
                      ++     |++..  ..|+|+.+||+||+.+++.      .+.|..|+++
T Consensus       249 ~g-----~~~~~~~~~F~SL~eLV~~Y~~~~L~~~~~gl~~~L~~Pv~~  292 (302)
T 2y3a_B          249 TG-----FGFAEPYNLYGSLKELVLHYQHASLVQHNDALTVTLAHPVRA  292 (302)
T ss_dssp             TE-----EESBTTBCCCSSHHHHHHTTSSSCSTTTCSSCCCCCSBCSCC
T ss_pred             Cc-----eEEeCCCCCCCCHHHHHHHHHhCCccccCCCCceeeCCccCC
Confidence            54     65543  7899999999999987653      2567788765

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}

Probab=99.69  E-value=2.6e-18  Score=174.07  Aligned_cols=148  Identities=17%  Similarity=0.293  Sum_probs=99.8

Q ss_pred             eeeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEeeCCCeeeEEecCceeecccccccccccccccCCCCCCCCCC
Q psy10852        111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQ  190 (563)
Q Consensus       111 ~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~~~g~~G~fP~~yv~~~~~~~~~~~~~~~~~~g~~~~~~~~  190 (563)
                      ..++|+|+|.++.++||+|++||+|.|+++.+++||.|+ .+|+.||||++||+.+........... .+...   ....
T Consensus       175 ~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~~~~~~~~~-~~~~~---~~~~  249 (341)
T 2dyb_A          175 PRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGT-VRGATGIFPLSFVKILKDFPEEDDPTN-WLRCY---YYED  249 (341)
T ss_dssp             CEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSSEEEEE-ETTEEEEEEGGGEEEEECCCCTTCCCE-EEEEE---EECS
T ss_pred             cEEEEEEeeCCCCCCcCCccCCCEEEEEEecCCCEEEEE-ECCcEEEechHHeEEcCCCCccccccc-ccccc---ccCC
Confidence            468999999999999999999999999999999999998 799999999999998864322111000 00000   0000


Q ss_pred             CCCccccc---cccccCccceeeeeccccCC--CCCCceee--ccCCEEEEeeecCCCceeeeeCC---ceeecccc-ce
Q psy10852        191 QTTPVRKT---HLEVKLPAFARVKQVRVPNA--YDKTALKL--EIGDIIKVTKTNINGQWEGELNG---KTGHFPFT-HV  259 (563)
Q Consensus       191 ~~~~~~~~---~~~~~~p~~~~~~~~~~~~a--~~~~eLsf--~~Gd~v~V~~~~~~~W~~g~~~g---~~G~~P~~-~v  259 (563)
                      ........   ...... ..++++++|.++.  ..+.+|+|  .+||+|.|+++.|+|||+|+++|   +.|+||.+ +|
T Consensus       250 ~~~~~~~~~~~~~~~~~-~~~~a~yd~~~~~~~~~e~eL~~~~~~GD~I~v~~~~d~gWw~Ge~~g~~G~~glfP~~~~v  328 (341)
T 2dyb_A          250 TISTIKDIAVEEDLSST-PLLKDLLELTRREFQREDIALNYRDAEGDLVRLLSDEDVALMVRQARGLPSQKRLFPWKLHI  328 (341)
T ss_dssp             SCEEEEEEEECSCTTCC-CCHHHHHHHHHHHHTCSCEEEEEECSSSCEEECCSHHHHHHHHHHHTTSCCBTTBCSSCEEE
T ss_pred             CCccccccccccccCCC-cchhhhhhhhhhhcCCCcccccCCCCCCCEEEEeeecCCCEeEEEECCCCCCCceecceeEE
Confidence            00000000   000111 1234556665544  45666777  89999999999999999999865   45599998 77


Q ss_pred             eecCC
Q psy10852        260 EFIPT  264 (563)
Q Consensus       260 e~~~~  264 (563)
                      +.+++
T Consensus       329 ~~~~~  333 (341)
T 2dyb_A          329 TQKDN  333 (341)
T ss_dssp             EECC-
T ss_pred             EecCC
Confidence            77653

>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine kinase, signal transduction, peptide recognition, signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1 PDB: 1d1z_A 1d4w_A* 1m27_A*

Probab=99.68  E-value=1.4e-16  Score=132.34  Aligned_cols=95  Identities=23%  Similarity=0.474  Sum_probs=81.3

Q ss_pred             CCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeC------CcccC
Q psy10852        285 RNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG------DKTFS  358 (563)
Q Consensus       285 ~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~------~~~f~  358 (563)
                      ..+||||.|+|.+|+.+|.....+|+||||.|++.+|.|+||++.++.++|++|....++    .|.+.      ...|+
T Consensus         3 ~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g----~~~l~~~~g~~~~~F~   78 (104)
T 1d4t_A            3 AVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETG----SWSAETAPGVHKRYFR   78 (104)
T ss_dssp             TCTTBCCSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTS----CEEECBCTTSCCCCBS
T ss_pred             CCceEccCCCHHHHHHHHHhcCCCCEEEEeeCCCCCCCEEEEEEECCeEEEEEEEECCCC----eEEEeccCCCCCcccC
Confidence            458999999999999999865477999999999999999999999999999999975443    27886      58999


Q ss_pred             ChhhHHhhhhcccCCC-Ccccccccc
Q psy10852        359 DLPSLLAFYKVHYLDT-SPLIKPATK  383 (563)
Q Consensus       359 sl~~lv~~y~~~~~~~-~~l~~P~~~  383 (563)
                      |+.+||+||+.++... +.|..|+++
T Consensus        79 sl~~LV~~y~~~~~~l~~~L~~P~~r  104 (104)
T 1d4t_A           79 KIKNLISAFQKPDQGIVIPLQYPVEK  104 (104)
T ss_dssp             SHHHHHHHHTSSSSSSSSCCCEECCC
T ss_pred             CHHHHHHHHhhCCCCCeEECCCcCCC
Confidence            9999999999887654 567788753

>2gsb_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=1e-16  Score=136.22  Aligned_cols=100  Identities=24%  Similarity=0.518  Sum_probs=86.7

Q ss_pred             CCCCCCCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeCCcccCC
Q psy10852        280 FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSD  359 (563)
Q Consensus       280 ~~~~~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~~~~f~s  359 (563)
                      .+.+....||||.|+|.+|+.+|.....+|+||||.|++.+|.|+||++.++.++||+|....++    .|.+++..|+|
T Consensus        10 ~~~l~~~~WyhG~isR~~Ae~lL~~~g~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g----~~~l~~~~F~s   85 (119)
T 2gsb_A           10 EDPHEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQRFKICPTPNN----QFMMGGRYYNS   85 (119)
T ss_dssp             CCSGGGCSSBCCSSCHHHHHHHHHHTCCSSEEEEEECSSSTTCEEEEEECSSCBCCCCEEEETTT----EEEESSCCBSC
T ss_pred             CcccccCCcccCCCCHHHHHHHHhhcCCCCeEEEEeCCCCCCceEEEEEECCEEEEEEEEEcCCC----CEEECCcccCC
Confidence            35566679999999999999999886567999999999999999999999999999999987544    38888899999


Q ss_pred             hhhHHhhhhcccCCC-Ccccccccc
Q psy10852        360 LPSLLAFYKVHYLDT-SPLIKPATK  383 (563)
Q Consensus       360 l~~lv~~y~~~~~~~-~~l~~P~~~  383 (563)
                      +.+||+||+.+++.. +.|..|+++
T Consensus        86 l~~LI~~y~~~~l~~~~~L~~Pv~~  110 (119)
T 2gsb_A           86 IGDIIDHYRKEQIVEGYYLKEPVPM  110 (119)
T ss_dssp             HHHHHHHHTTSCSBTTBCCCCCCCC
T ss_pred             HHHHHHHHhhCccCCCCEeCCccCC
Confidence            999999999987653 567888765

>1ju5_A CRK; CRK, SH2, SH3, adaptor protein, phosphopeptide, protein binding/transferase complex; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1

Probab=99.68  E-value=1.5e-16  Score=133.20  Aligned_cols=95  Identities=54%  Similarity=0.949  Sum_probs=83.0

Q ss_pred             CccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCC-----------c---ceeEEe
Q psy10852        287 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTE-----------Q---QTCYKI  352 (563)
Q Consensus       287 ~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~-----------~---~~~~~i  352 (563)
                      +||||.|+|.+|+.+|.. ..+|+||||.|++.+|.|+||++.++.++|++|...+...           +   . .|.+
T Consensus         1 ~Wyhg~isr~~Ae~lL~~-~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~g~~~~~~~~~~~g~~~~-~~~l   78 (109)
T 1ju5_A            1 SWYWGRLSRQEAVALLQG-QRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVSPS-RLRI   78 (109)
T ss_dssp             CCEETTCCHHHHHHHHTT-CCTTEEEEEECSSSTTEEEEEEECSSCEEEEEEECCSSSSCCCCCCSSCCTTCCCC-CEEE
T ss_pred             CccccCCCHHHHHHHhcC-CCCCEEEEEecCCCCCCEEEEEEECCeEEEEEEEECCCCccccccccccccccccc-EEEe
Confidence            599999999999999975 5679999999999999999999999999999998865310           0   1 2888


Q ss_pred             CCcccCChhhHHhhhhcccCCCCcccccccc
Q psy10852        353 GDKTFSDLPSLLAFYKVHYLDTSPLIKPATK  383 (563)
Q Consensus       353 ~~~~f~sl~~lv~~y~~~~~~~~~l~~P~~~  383 (563)
                      ++..|+|+.+||+||+.+++..+.|..|+++
T Consensus        79 ~~~~F~sl~~LV~~y~~~~l~~~~L~~Pv~r  109 (109)
T 1ju5_A           79 GDQEFDSLPALLEFYKIHYLDTTTLIEPVSR  109 (109)
T ss_dssp             TTEEESSHHHHHHHHHHSCSSSSCCCEESCC
T ss_pred             CCcccCCHHHHHHHHhhCCCCCeecCccCCC
Confidence            8899999999999999999988889999864

>3us4_A Megakaryocyte-associated tyrosine-protein kinase; SH2 domain, signaling protein, structural genomics, joint CE structural genomics, JCSG; 1.50A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jwo_A

Probab=99.67  E-value=2.7e-16  Score=129.18  Aligned_cols=94  Identities=30%  Similarity=0.512  Sum_probs=81.7

Q ss_pred             CCCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeC-CcccCChhh
Q psy10852        284 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDLPS  362 (563)
Q Consensus       284 ~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~-~~~f~sl~~  362 (563)
                      +..+||||.|+|.+|+++|.. ..+|+||||.|++.+|.|+||++.++.++|++|...+..     |.+. +..|+|+.+
T Consensus         3 ~~~~Wyhg~isr~~Ae~lL~~-~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~-----~~~~~~~~F~sl~~   76 (98)
T 3us4_A            3 SLMPWFHGKISGQEAVQQLQP-PEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGH-----LTIDEAVFFCNLMD   76 (98)
T ss_dssp             TTCTTBCCSCCHHHHHHHTCS-CCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEEETTE-----EESSSSSEESSHHH
T ss_pred             ccCcccCCCCCHHHHHHHccC-CCCcEEEEEeCCCCCCcEEEEEEECCceEEEEEEEeCCE-----EEECCCCccCCHHH
Confidence            345999999999999999975 467999999999999999999999999999999985432     8886 489999999


Q ss_pred             HHhhhhcccCCC-Ccccccccc
Q psy10852        363 LLAFYKVHYLDT-SPLIKPATK  383 (563)
Q Consensus       363 lv~~y~~~~~~~-~~l~~P~~~  383 (563)
                      ||+||+.+.... ++|..|+++
T Consensus        77 Lv~~y~~~~~~l~~~L~~P~pk   98 (98)
T 3us4_A           77 MVEHYSKDKGAICTKLVRPKRK   98 (98)
T ss_dssp             HHHHHHHCCTTSSSCCCSBCCC
T ss_pred             HHHHhhhCCCCCeEcCCccCCC
Confidence            999999988654 678888874

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.66  E-value=2.2e-16  Score=173.26  Aligned_cols=99  Identities=28%  Similarity=0.451  Sum_probs=86.1

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeC-Ccee
Q psy10852          5 FDPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTF   82 (563)
Q Consensus         5 ~~~~~~~~w~~g~i~r~~ae~~L~~-~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F   82 (563)
                      ...++.++||||.|+|++||++|+. ...+|+||||+| +.+|.|+|||+.++.|+||+|.+..++    .|.+. +..|
T Consensus       155 ~~~~~~~~wyhg~i~r~~ae~~L~~~~~~~G~FLvR~s-~~~~~~~lsv~~~~~v~h~~I~~~~~g----~~~~~~~~~F  229 (613)
T 2ozo_A          155 TTAHERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPR-KEQGTYALSLIYGKTVYHYLISQDKAG----KYCIPEGTKF  229 (613)
T ss_dssp             TSCTTTSTTBCTTCCHHHHHHHHSSSCCCTTCEEEEEC-SSTTEEEEEEEETTEEEEEEEEECTTC----CEECTTSCEE
T ss_pred             ccccccCCccccCCCHHHHHHHHhhcCCCCceEEEEec-CCCCCEEEEEEECCeEEEEEEEECCCC----CEEECCCCCc
Confidence            3568889999999999999999986 346799999999 558999999999999999999986655    38876 6899


Q ss_pred             cChHhhHHhhhcccCC-Cccccccccc
Q psy10852         83 SDLPSLLAFYKVHYLD-TSPLIKPATK  108 (563)
Q Consensus        83 ~sl~~Li~~y~~~~~~-~~~L~~p~~~  108 (563)
                      .||.+||+||+.++.+ .+.|..||+.
T Consensus       230 ~sl~~Lv~~y~~~~~~l~~~L~~pC~~  256 (613)
T 2ozo_A          230 DTLWQLVEYLKLKADGLIYCLKEACPN  256 (613)
T ss_dssp             SSHHHHHHHHHHCCTTCSSCCCSBCCC
T ss_pred             CCHHHHHHHHhhCCCCceecccccccc
Confidence            9999999999998876 5678889876

>1lkk_A Human P56 tyrosine kinase; complex (tyrosine kinase/peptide); HET: PTR; 1.00A {Homo sapiens} SCOP: d.93.1.1 PDB: 1lcj_A* 1bhf_A* 1bhh_A 1lkl_A* 1bhh_B 1fbz_A* 1ijr_A* 1cwd_L* 1cwe_A*

Probab=99.66  E-value=3.9e-16  Score=130.03  Aligned_cols=95  Identities=28%  Similarity=0.573  Sum_probs=81.7

Q ss_pred             CCCccccccCHHHHHHHHhc-CCCCCcEEEEecCCCCcceEEEEEe-----CCeeEEEEEeeecCCCcceeEEeC-Cccc
Q psy10852        285 RNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKITNTEQQTCYKIG-DKTF  357 (563)
Q Consensus       285 ~~~w~~g~~sr~~A~~~l~~-~~~~G~FlvR~S~~~~g~~~ls~~~-----~~~v~h~~I~~~~~~~~~~~~~i~-~~~f  357 (563)
                      ..+||||.|+|.+|+.+|.. ...+|+||||.|++.+|.|+||++.     ++.++||+|...+++    +|++. ...|
T Consensus         3 ~~~Wyhg~isR~~Ae~lL~~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~~~~~~v~H~~I~~~~~g----~~~l~~~~~F   78 (105)
T 1lkk_A            3 PEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNG----GFYISPRITF   78 (105)
T ss_dssp             CCTTBCTTCCHHHHHHHHTSTTCCTTCEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEEECTTS----CEESSTTSCB
T ss_pred             cCceecCCCCHHHHHHHHHhcCCCCceEEEEECCCCCCcEEEEEEEcccCCCCcEEEEEEEECCCC----CEEECCCcee
Confidence            45899999999999999986 4678999999999999999999998     678999999986543    27886 5899


Q ss_pred             CChhhHHhhhhcccCCC-Ccccccccc
Q psy10852        358 SDLPSLLAFYKVHYLDT-SPLIKPATK  383 (563)
Q Consensus       358 ~sl~~lv~~y~~~~~~~-~~l~~P~~~  383 (563)
                      +|+.+||+||+.+.... +.|..|+++
T Consensus        79 ~sl~~LI~~y~~~~~~l~~~L~~P~~~  105 (105)
T 1lkk_A           79 PGLHELVRHYTNASDGLCTRLSRPCQT  105 (105)
T ss_dssp             SSHHHHHHHHHHCCTTSSSCCCSBCCC
T ss_pred             CCHHHHHHHHhhCCCCCccCCcCcCCC
Confidence            99999999999987654 678888864

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.66  E-value=2.7e-17  Score=134.99  Aligned_cols=90  Identities=23%  Similarity=0.343  Sum_probs=70.8

Q ss_pred             cCCcEEEEcCCCeEeccCCcccccccccCCCCCCCCCCCCCCCcccccccccccccceEEeecCCCCCCCCCCeeccCCC
Q psy10852        426 ISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGD  505 (563)
Q Consensus       426 ~~g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~eL~~~~gd  505 (563)
                      .+|+.||||++||+.+........             +            .......++|+++|.  +++++||+|++||
T Consensus         5 ~~g~~G~fP~~~v~~~~~~~~~~~-------------p------------~~~~~~~~~al~dy~--~~~~~eLs~~~Gd   57 (98)
T 1udl_A            5 SSGQKGWFPASHVKLLGPSSERAT-------------P------------AFHPVCQVIAMYDYA--ANNEDELSFSKGQ   57 (98)
T ss_dssp             CSSCCSSCCCCCCCCCSCCCCCCC-------------S------------CCCCSEEEEESSCCC--CSSTTSCCCCTTC
T ss_pred             CCCCEeEEEhhhEEEcCCcccccC-------------C------------CCCCceEEEECCCCC--CCCCCccCCcCCC
Confidence            468999999999997754311000             0            001134688899998  5568899999999


Q ss_pred             EEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCCCC
Q psy10852        506 IIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET  542 (563)
Q Consensus       506 ~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~~~  542 (563)
                      +|.|+++.++|||.|+++|++||||++||+.+.+...
T Consensus        58 ~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~   94 (98)
T 1udl_A           58 LINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTDSSG   94 (98)
T ss_dssp             EEEECBCCSSSEEBCBSSSCBCCEETTSEEECCCCSS
T ss_pred             EEEEEEecCCCEEEEEECCcEEEEehHHeEEcCCCCC
Confidence            9999999889999999999999999999999977654

>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal transduction lymphocyte, signaling protein; HET: PTR; 2.15A {Mus musculus} SCOP: d.93.1.1

Probab=99.66  E-value=3.5e-16  Score=129.74  Aligned_cols=93  Identities=30%  Similarity=0.498  Sum_probs=79.8

Q ss_pred             CCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeC------CcccCC
Q psy10852        286 NSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG------DKTFSD  359 (563)
Q Consensus       286 ~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~------~~~f~s  359 (563)
                      .+||||.|+|++|+.+|.....+|+||||.|++.+|.|+||++.++.++|++|....++    .|.+.      ...|+|
T Consensus         3 ~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g----~~~l~~~~g~~~~~F~s   78 (103)
T 1i3z_A            3 LPYYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHG----YYRIETDAHTPRTIFPN   78 (103)
T ss_dssp             CTTEESSCCHHHHHHHHHTTCSTTEEEEEECSSSTTCEEEEEECSSSEEEEEEEECTTS----CEEECBCTTSCCCEESS
T ss_pred             CccccCCCCHHHHHHHHhhcCCCceEEEEeCCCCCCCEEEEEEECCEEEEEEEEECCCC----eEEEeccCCCCCcccCC
Confidence            48999999999999999875578999999999999999999999999999999975433    27776      478999


Q ss_pred             hhhHHhhhhcccCCC-Cccccccc
Q psy10852        360 LPSLLAFYKVHYLDT-SPLIKPAT  382 (563)
Q Consensus       360 l~~lv~~y~~~~~~~-~~l~~P~~  382 (563)
                      +.+||+||+.+.... +.|..|++
T Consensus        79 l~~LV~~y~~~~~~l~~~L~~P~~  102 (103)
T 1i3z_A           79 LQELVSKYGKPGQGLVVHLSNPIM  102 (103)
T ss_dssp             SHHHHHHTTSSSSSSSSCCCEECC
T ss_pred             HHHHHHHHhhCCCCCeEEcCCccC
Confidence            999999999876543 56777775

>1jyr_A Growth factor receptor-bound protein 2; receptor binding, regulatory, inhibitor, signaling protein-I complex; HET: PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A* 1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E* 1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A*

Probab=99.66  E-value=4.9e-16  Score=126.81  Aligned_cols=84  Identities=27%  Similarity=0.547  Sum_probs=75.9

Q ss_pred             CCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeCCcccCChhhHHh
Q psy10852        286 NSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLA  365 (563)
Q Consensus       286 ~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~~~~f~sl~~lv~  365 (563)
                      .+||||.|+|.+|+.+|.....+|+||||.|++.+|.|+||++.++.++|++|....++    .|.+.+..|+|+.+||+
T Consensus         3 ~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g----~~~l~~~~F~sl~~LV~   78 (96)
T 1jyr_A            3 MAWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAG----KYFLWVVKFNSLNELVD   78 (96)
T ss_dssp             CTTBCCSCCHHHHHHHHHTCCSTTBEEEEECSSSTTCEEEEEEETTEEEEEECEECTTS----CEESSSCEESSHHHHHH
T ss_pred             cceeccCCCHHHHHHHHhcCCCCcEEEEEecCCCCCCEEEEEEeCCeEEEEEEEEcCCC----CEEECCcccCCHHHHHH
Confidence            48999999999999999986558999999999999999999999999999999986443    38888899999999999


Q ss_pred             hhhcccCC
Q psy10852        366 FYKVHYLD  373 (563)
Q Consensus       366 ~y~~~~~~  373 (563)
                      ||+.+++.
T Consensus        79 ~y~~~~l~   86 (96)
T 1jyr_A           79 YHRSTSVS   86 (96)
T ss_dssp             HTTSSCSC
T ss_pred             HHhhCCCC
Confidence            99988765

>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6 (PTK6/BRK), SRC homology 2(S domain, solution structure, backbone dynamics, transferase; NMR {Homo sapiens} SCOP: d.93.1.1

Probab=99.66  E-value=3.7e-16  Score=128.73  Aligned_cols=94  Identities=32%  Similarity=0.576  Sum_probs=82.0

Q ss_pred             CCccccccCHHHHHHHHhcC-CCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeC-CcccCChhhH
Q psy10852        286 NSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDLPSL  363 (563)
Q Consensus       286 ~~w~~g~~sr~~A~~~l~~~-~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~-~~~f~sl~~l  363 (563)
                      .+||||.|+|++|+.+|... ..+|+||||.|++.+|.|+||++.++.++|++|...+++    .|.+. ...|+|+.+|
T Consensus         2 ~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g----~~~l~~~~~F~sl~~L   77 (100)
T 1rja_A            2 EPWFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGG----RLHLNEAVSFLSLPEL   77 (100)
T ss_dssp             CCCBCTTCCHHHHHHHHSSTTCSSCCEEEEECSSSSSCEEEEECTTSSCEEEEEEECSSS----CEEEETTEEESSHHHH
T ss_pred             CCcccCCCCHHHHHHHHhccCCCCCEEEEEeCCCCCCCEEEEEEECCEEEEEEEEEcCCC----cEEECCCCccCCHHHH
Confidence            48999999999999999874 578999999999999999999999999999999986443    27775 5899999999


Q ss_pred             HhhhhcccCCC-Ccccccccc
Q psy10852        364 LAFYKVHYLDT-SPLIKPATK  383 (563)
Q Consensus       364 v~~y~~~~~~~-~~l~~P~~~  383 (563)
                      |+||+.+.+.. +.|..|+++
T Consensus        78 V~~y~~~~~~l~~~L~~p~~~   98 (100)
T 1rja_A           78 VNYHRAQSLSHGLRLAAPCRK   98 (100)
T ss_dssp             HHHHHHCCTTSSSCCCSBCCC
T ss_pred             HHHHhhCCCCCCCCCCccCCC
Confidence            99999988764 668888875

>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling protein; 1.65A {Homo sapiens} SCOP: d.93.1.1 PDB: 3m7f_A

Probab=99.66  E-value=5.9e-16  Score=128.83  Aligned_cols=100  Identities=26%  Similarity=0.493  Sum_probs=80.8

Q ss_pred             CCCCCccccccCHHHHHHHHhcC-CCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeC--CcccCC
Q psy10852        283 HDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG--DKTFSD  359 (563)
Q Consensus       283 ~~~~~w~~g~~sr~~A~~~l~~~-~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~--~~~f~s  359 (563)
                      |+...||||.|+|.+|+.+|... ..+|+||||.|++.+|.|+||++.++.++|++|...... +...|.+.  ...|+|
T Consensus         2 h~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~~-g~~~~~~~~~~~~F~s   80 (105)
T 1nrv_A            2 HRTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEDD-GQTFFSLDDGNTKFSD   80 (105)
T ss_dssp             CTTSTTBCTTCCHHHHHHHHHHTTCCTTEEEEEECSSCTTCEEEEEEETTEEEEEEEEEC------CCEESSTTSSCBSS
T ss_pred             CccCcccCCCCCHHHHHHHHHhcCCCCceEEEEeCCCCCCCEEEEEEeCCEEEEEEEEEEcCC-CCEEEEEcCCCcccCC
Confidence            34569999999999999999874 578999999999999999999999999999999875421 11115665  489999


Q ss_pred             hhhHHhhhhcccCCC-Ccccccccc
Q psy10852        360 LPSLLAFYKVHYLDT-SPLIKPATK  383 (563)
Q Consensus       360 l~~lv~~y~~~~~~~-~~l~~P~~~  383 (563)
                      +.+||+||+.+.+.. +.|..|+++
T Consensus        81 l~~LV~~y~~~~~~l~~~L~~p~~r  105 (105)
T 1nrv_A           81 LIQLVDFYQLNKGVLPCKLKHHCIR  105 (105)
T ss_dssp             HHHHHHHHTTCCTTSSSCCCEECCC
T ss_pred             HHHHHHHhhhCCCCCcEeCCCcCCC
Confidence            999999999887654 567888763

>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens}

Probab=99.65  E-value=4.8e-16  Score=132.29  Aligned_cols=98  Identities=30%  Similarity=0.476  Sum_probs=83.5

Q ss_pred             CCCCCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeCC------c
Q psy10852        282 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD------K  355 (563)
Q Consensus       282 ~~~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~~------~  355 (563)
                      ......||||.|+|.+|+.+|.....+|+||||.|++.+|.|+||++.++.++||+|....++    .|.+..      .
T Consensus         6 ~~~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g----~~~l~~~~g~~~~   81 (119)
T 2ysx_A            6 SGMVPCWNHGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYRNCVYTYRILPNEDD----KFTVQASEGVSMR   81 (119)
T ss_dssp             SSCCCSSEEESCCHHHHHHHHHHHCCTTEEEEEECSSCTTSEEEEEECSSCEEEEEEEECTTS----CEEECCSCSSSCC
T ss_pred             CCCCCccccCCCCHHHHHHHHhhcCCCCEEEEEeCCCCCCCEEEEEEECCEEEEEEEEEcCCC----CEEEeccCCcCCc
Confidence            345569999999999999999874477999999999999999999999999999999976543    278863      6


Q ss_pred             ccCChhhHHhhhhcccCCC-Ccccccccc
Q psy10852        356 TFSDLPSLLAFYKVHYLDT-SPLIKPATK  383 (563)
Q Consensus       356 ~f~sl~~lv~~y~~~~~~~-~~l~~P~~~  383 (563)
                      .|+||.+||+||+.+.+.. +.|..|+++
T Consensus        82 ~F~sl~eLV~~y~~~~~~l~~~L~~P~~~  110 (119)
T 2ysx_A           82 FFTKLDQLIEFYKKENMGLVTHLQYPVPL  110 (119)
T ss_dssp             CBSSHHHHHHHTTSSSSSSSSCCCEECCC
T ss_pred             ccCCHHHHHHHHhhCCCCCCeECCCcCCC
Confidence            8999999999999887654 568888865

>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}

Probab=99.65  E-value=1.2e-16  Score=117.14  Aligned_cols=57  Identities=23%  Similarity=0.529  Sum_probs=52.4

Q ss_pred             eeeEEEeecccCCCCCC-CCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEec
Q psy10852        385 IEKVIAKYDFDGNDPDD-LPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY  441 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~e-l~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~  441 (563)
                      ..+|+|+|+|.++.++| |+|++||+|.|+++.+++||+|+..+|+.||||++||+.+
T Consensus         3 g~~~rAlydy~~~~~~e~Ls~~~Gd~i~v~~~~~~~Ww~g~~~~G~~G~fP~nyVe~i   60 (60)
T 2lx7_A            3 GARCRTLYPFSGERHGQGLRFAAGELITLLQVPDGGWWEGEKEDGLRGWFPASYVQLL   60 (60)
T ss_dssp             SCEEEESCCCCSCCCSSCCCCCTTCEEEBSCCCTTSCEEEECTTSCEEEECGGGEEEC
T ss_pred             CCEEEECcccCCCCCCCCccCCCCCEEEEeEecCCCeEEEEeCCCCEEEEcHHHEEEC
Confidence            35799999999998887 9999999999999999999999966899999999999864

>3maz_A Signal-transducing adaptor protein 1; modular domain, phosphotyrosine, specificity, cytoplasm, phosphoprotein, SH2 domain, signaling protein; HET: PTR; 1.90A {Homo sapiens}

Probab=99.65  E-value=4.4e-16  Score=130.03  Aligned_cols=92  Identities=20%  Similarity=0.371  Sum_probs=77.7

Q ss_pred             CCCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEe---CCeeEEEEEeeecCCCcceeEEeCC---ccc
Q psy10852        284 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKE---NNKVSHYIINKITNTEQQTCYKIGD---KTF  357 (563)
Q Consensus       284 ~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~---~~~v~h~~I~~~~~~~~~~~~~i~~---~~f  357 (563)
                      +.++||+++++|.+|+.+|...+..|+||||+|++.+ +|+||++.   ++.|+||+|.+.+ +    +|+|..   ..|
T Consensus        13 ~~epWff~~isR~eAE~lL~~~~~~GaFLVR~Se~~~-~ySLSVR~~~~~~~VKHYkI~~~~-G----~y~I~~~~~~~F   86 (125)
T 3maz_A           13 NPMPACFYTVSRKEATEMLQKNPSLGNMILRPGSDSR-NYSITIRQEIDIPRIKHYKVMSVG-Q----NYTIELEKPVTL   86 (125)
T ss_dssp             CCCCTTBCCCCHHHHHHHHHHCGGGCSEEEEECTTSS-SEEEEEEECSSSCEEEEEEEEEET-T----EEEECSSSCEEE
T ss_pred             cCCCCCcCCCCHHHHHHHHhccCCCCcEEEEeCCCCC-CEEEEEEecCCCCCEeeeEEEEeC-C----EEEEecCCCcCc
Confidence            4469999999999999998776678999999998865 99999998   6799999999883 3    488873   579


Q ss_pred             CChhhHHhhhhcccCCC-Ccccccc
Q psy10852        358 SDLPSLLAFYKVHYLDT-SPLIKPA  381 (563)
Q Consensus       358 ~sl~~lv~~y~~~~~~~-~~l~~P~  381 (563)
                      +||.+||+||+.+++.. ++|..|+
T Consensus        87 ~SL~eLV~yY~~~adGl~~~L~~~c  111 (125)
T 3maz_A           87 PNLFSVIDYFVKETRGNLRPFIAST  111 (125)
T ss_dssp             SSHHHHHHHHHHHTTTCCCBCCC--
T ss_pred             CCHHHHHHHHHhCCCcCcccccccc
Confidence            99999999999998876 5677776

>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain, phosphotyrosine binding, signaling protein, signaling protein-antagonist complex; HET: PTR; 1.60A {Homo sapiens} SCOP: d.93.1.1 PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A* 3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A* 2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A* 1fyr_A* ...

Probab=99.65  E-value=7.2e-16  Score=130.49  Aligned_cols=86  Identities=27%  Similarity=0.541  Sum_probs=77.6

Q ss_pred             CCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeCCcccCChhhHH
Q psy10852        285 RNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLL  364 (563)
Q Consensus       285 ~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~~~~f~sl~~lv  364 (563)
                      ..+||+|.|+|.+|+.+|.....+|+||||.|++.+|.|+||++.++.++||+|....++    .|.+.+..|+|+.+||
T Consensus         5 ~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g----~~~l~~~~F~sl~eLV   80 (117)
T 3ov1_A            5 PHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAG----KYFLWVVKFNSLNELV   80 (117)
T ss_dssp             CCTTBCCSCCHHHHHHHHHTCCSTTBEEEEECSSSTTCEEEEEEETTEEEEEECEECTTS----CEESSSCEESSHHHHH
T ss_pred             cCCcccCCCCHHHHHHHHhCCCCCCcEEEEeCCCCCCCEEEEEecCCceEEEEEEECCCC----eEEECCCCcCCHHHHH
Confidence            458999999999999999997678999999999999999999999999999999875443    3888889999999999


Q ss_pred             hhhhcccCCC
Q psy10852        365 AFYKVHYLDT  374 (563)
Q Consensus       365 ~~y~~~~~~~  374 (563)
                      +||+.+++..
T Consensus        81 ~~y~~~~l~~   90 (117)
T 3ov1_A           81 DYHRSTSVSR   90 (117)
T ss_dssp             HHTTTSCSCS
T ss_pred             HHHhhCCCCC
Confidence            9999998753

>2cia_A Cytoplasmic protein NCK2; SH2-domain, SH3 domain, phosphorylation, binding specificity; HET: PTR MPD; 1.45A {Homo sapiens} PDB: 1z3k_A 2ci9_A* 2ci8_A*

Probab=99.65  E-value=2.4e-16  Score=130.30  Aligned_cols=84  Identities=29%  Similarity=0.584  Sum_probs=73.9

Q ss_pred             CCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeCCcccCChhhHH
Q psy10852        285 RNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLL  364 (563)
Q Consensus       285 ~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~~~~f~sl~~lv  364 (563)
                      ..+||||.|+|++|+++|.....+|+||||.|++.+|.|+||++.++.++|++|...+.     +|.+++..|+|+.+||
T Consensus         4 ~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~g-----~~~l~~~~F~sl~~LV   78 (102)
T 2cia_A            4 GSEWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDN-----VYCIGQRRFHTMDELV   78 (102)
T ss_dssp             -CTTBCCSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEECCSSSCEEEEEEEETT-----EEEETTEEESSHHHHH
T ss_pred             CCccccCCCCHHHHHHHHhhCCCCcEEEEEECCCCCCCEEEEEEeCCeeEEEEEEecCC-----EEEECCcCcCCHHHHH
Confidence            35899999999999999965447799999999999999999999999999999985432     3899889999999999


Q ss_pred             hhhhcccCC
Q psy10852        365 AFYKVHYLD  373 (563)
Q Consensus       365 ~~y~~~~~~  373 (563)
                      +||+.+++.
T Consensus        79 ~~y~~~~l~   87 (102)
T 2cia_A           79 EHYKKAPIF   87 (102)
T ss_dssp             HHHHHSCSE
T ss_pred             HHHhhCccc
Confidence            999988763

>2crh_A VAV proto-oncogene; oncoprotein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2ror_A* 2lct_A*

Probab=99.64  E-value=3.7e-16  Score=136.29  Aligned_cols=92  Identities=32%  Similarity=0.546  Sum_probs=78.6

Q ss_pred             CCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeC-CcccCChhhHH
Q psy10852        286 NSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDLPSLL  364 (563)
Q Consensus       286 ~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~-~~~f~sl~~lv  364 (563)
                      ..||||.|+|.+|+.+|... .+|+||||.|++.++.|+||++.++.|+||+|.. .++    .|.+. ...|+||.+||
T Consensus        26 ~~WyhG~isR~eAe~lL~~~-~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~-~~g----~~~l~~~~~F~sl~eLV   99 (138)
T 2crh_A           26 HLWYAGPMERAGAESILANR-SDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIMT-AEG----LYRITEKKAFRGLTELV   99 (138)
T ss_dssp             SSSBCCSCCHHHHHHHTTTS-CTTEEEEECCSSTTCCCEEEEEETTEEEEEECEE-ETT----EEESSTTCCBSSHHHHH
T ss_pred             CCcccCCCCHHHHHHHhcCC-CCCEEEEEECCCCCCCEEEEEEECCeEEEEEEEe-CCC----EEEECCCCccCCHHHHH
Confidence            48999999999999999874 6799999999998999999999999999999953 332    38886 58999999999


Q ss_pred             hhhhcccCC------CCcccccccc
Q psy10852        365 AFYKVHYLD------TSPLIKPATK  383 (563)
Q Consensus       365 ~~y~~~~~~------~~~l~~P~~~  383 (563)
                      +||+.+++.      .+.|..|+++
T Consensus       100 ~~y~~~~l~~~~~~l~~~L~~Pv~~  124 (138)
T 2crh_A          100 EFYQQNSLKDCFKSLDTTLQFPFKE  124 (138)
T ss_dssp             HHHTTSCGGGTCTTCCCCCCEESSC
T ss_pred             HHHHhCccccccCCcCcccCCccCC
Confidence            999988753      2567777765

>2cr4_A 3BP-2, SH3 domain-binding protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=6.6e-17  Score=138.08  Aligned_cols=88  Identities=22%  Similarity=0.328  Sum_probs=70.1

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcCC-CCCCeEEEEecCCCCcceEEEEEEC--CeEEEEEEEEecCCCcceEEEeC-Cce
Q psy10852          6 DPHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKEN--NKVSHYIINKITNTEQQTCYKIG-DKT   81 (563)
Q Consensus         6 ~~~~~~~w~~g~i~r~~ae~~L~~~-~~~G~FLvR~s~~~~~~~~lsv~~~--~~v~h~~I~~~~~~~~~~~~~~~-~~~   81 (563)
                      +.++.++|||         .+|... ..||+||||+|+ .+|.|+|||+.+  ++|+||+|.+.+++     |.+. +..
T Consensus        25 ~~l~~~~Wyh---------~Ll~~g~~~dG~FLVR~S~-~~g~y~LSv~~~~~~~vkH~rI~~~~~~-----~~i~~~~~   89 (126)
T 2cr4_A           25 ESCEVERLFK---------ATSPRGEPQDGLYCIRNSS-TKSGKVLVVWDETSNKVRNYRIFEKDSK-----FYLEGEVL   89 (126)
T ss_dssp             CHHHHHHHHH---------HHSTTSCCCTTCEEEEECS-STTCEEEEEEETTTTEECCEECEEETTE-----EESSSSCE
T ss_pred             cccccCCCHH---------HHhhCCCCCCCeEEEEecC-CCCCEEEEEEeCCCCCEEEEEEEECCCe-----EEEcCCcc
Confidence            3455679999         333333 335999999999 799999999999  99999999986542     7775 579


Q ss_pred             ecChHhhHHhhhcccCC---Cccccccccc
Q psy10852         82 FSDLPSLLAFYKVHYLD---TSPLIKPATK  108 (563)
Q Consensus        82 F~sl~~Li~~y~~~~~~---~~~L~~p~~~  108 (563)
                      |.||.+||+||+.+++.   ...|+.|+.+
T Consensus        90 F~sL~eLV~hY~~~~l~~~~~~~L~~P~~~  119 (126)
T 2cr4_A           90 FVSVGSMVEHYHTHVLPSHQSLLLRHPYGY  119 (126)
T ss_dssp             ESSHHHHHHHHTTSCCSSSSSCCCCSBSSC
T ss_pred             CCCHHHHHHHHhhCCcCCCCCEEeCCcCCC
Confidence            99999999999999874   4567778765

>3pqz_A Growth factor receptor-bound protein 7; SH2, binds phosphotyrosine, tyrosine kinases, cytoplasmic, P binding; 2.41A {Homo sapiens} PDB: 1mw4_A* 2l4k_A* 2qms_A

Probab=99.64  E-value=8e-16  Score=130.74  Aligned_cols=102  Identities=25%  Similarity=0.420  Sum_probs=82.7

Q ss_pred             CCCCCCCccccccCHHHHHHHHhcC-CCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeC--Cccc
Q psy10852        281 DPHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG--DKTF  357 (563)
Q Consensus       281 ~~~~~~~w~~g~~sr~~A~~~l~~~-~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~--~~~f  357 (563)
                      ..+..++||||.|+|.+|+.+|... ..+|+||||.|++.++.|+||++.++.++|++|...... +.+.|.+.  ...|
T Consensus         9 ~~~~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~-g~~~~~~~~~~~~F   87 (117)
T 3pqz_A            9 AIHRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEE-GRLYFSMDDGQTRF   87 (117)
T ss_dssp             CGGGGCTTBCCSCCHHHHHHHHHHTTCCTTEEEEEECCC-CCCEEEEEEETTEEEEEEEEEECCT-TCCEEESSTTSSCB
T ss_pred             hhcccCccccCCCCHHHHHHHHhcCCCCCCEEEEEecCCCCCcEEEEEEeCCeeEEEEEEEecCC-CCEEEEECCCCccc
Confidence            4456679999999999999999874 568999999999999999999999999999999886322 22214453  4899


Q ss_pred             CChhhHHhhhhcccCCC-Ccccccccc
Q psy10852        358 SDLPSLLAFYKVHYLDT-SPLIKPATK  383 (563)
Q Consensus       358 ~sl~~lv~~y~~~~~~~-~~l~~P~~~  383 (563)
                      +|+.+||+||+.+.+.. +.|..|+++
T Consensus        88 ~sl~~LV~~y~~~~~~l~~~L~~P~~~  114 (117)
T 3pqz_A           88 TDLLQLVEFHQLNRGILPCLLRHCCTR  114 (117)
T ss_dssp             SSHHHHHHHHHHCCTTSSSCCCEECC-
T ss_pred             CCHHHHHHHHhhCCCCCcEECCCcCcc
Confidence            99999999999988764 678888875

>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}

Probab=99.64  E-value=2.6e-15  Score=135.04  Aligned_cols=76  Identities=22%  Similarity=0.389  Sum_probs=67.0

Q ss_pred             CCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEE-CCeEEEEEEEEecCCCcceEEEeCCceecChHhhH
Q psy10852         11 NSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKE-NNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLL   89 (563)
Q Consensus        11 ~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~-~~~v~h~~I~~~~~~~~~~~~~~~~~~F~sl~~Li   89 (563)
                      .|||| ++++.+||++|+. .+ |+||||.|+. ++.++||++. ++.+.|+.|...+..     |.+++..|.+|+|||
T Consensus        14 HP~F~-n~s~~qAe~~L~~-~~-G~~liRPSsk-~~~ltit~Kv~d~~~~Hi~I~E~~k~-----l~ig~~~fedLDElI   84 (178)
T 2xp1_A           14 HPLFK-NFNVTESENYLRS-ST-DDFLIRKGSR-HGYCVLVIKFASDVFVHMKIEEHSEH-----YTCSNKHFEDIDEVI   84 (178)
T ss_dssp             STTEE-CCCHHHHHHHHHH-SS-CCEEEEECSS-TTEEEEEEEEETTEEEEEEEEECSSC-----EEETTEEESSHHHHH
T ss_pred             CCCcC-CCCHHHHHHHHhc-CC-CCEEEeecCC-CCcEEEEEEECCCcEEEEEEEECCCE-----EEECCcEECCHHHHH
Confidence            48999 7999999999998 44 9999999998 7789999995 889999999875432     999999999999999


Q ss_pred             Hhhhcc
Q psy10852         90 AFYKVH   95 (563)
Q Consensus        90 ~~y~~~   95 (563)
                      .+|...
T Consensus        85 ~~yv~p   90 (178)
T 2xp1_A           85 SVYVRP   90 (178)
T ss_dssp             HHTHHH
T ss_pred             HHHHHH
Confidence            999873

>2eob_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 2; SH2, phosphoinositide phospholipase C, PLC-gamma-2, phospholipase C-gamma-2; NMR {Rattus norvegicus}

Probab=99.64  E-value=1.1e-15  Score=130.89  Aligned_cols=96  Identities=30%  Similarity=0.593  Sum_probs=82.2

Q ss_pred             CCCCCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeCC-cccCCh
Q psy10852        282 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD-KTFSDL  360 (563)
Q Consensus       282 ~~~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~~-~~f~sl  360 (563)
                      .++..+||||.|+|.+|+.+|.....+|+||||.|+ .++.|+||++.++.++||+|...+..     |.++. ..|+|+
T Consensus        15 ~l~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~-~~g~y~LSv~~~~~v~H~~I~~~~~~-----~~~~~~~~F~sl   88 (124)
T 2eob_A           15 PHESKPWYYDRLSRGEAEDMLMRIPRDGAFLIRKRE-GTDSYAITFRARGKVKHCRINRDGRH-----FVLGTSAYFESL   88 (124)
T ss_dssp             STTTSTTEESSCCHHHHHHHHHHCCSSSEEEEECCT-TSSCEEEEEEETTEEEEEEEEESSSC-----EESSSSCCBSSH
T ss_pred             ccCcCCCeecCCCHHHHHHHHhcCCCCCEEEEEecC-CCCCEEEEEEeCCeEEEEEEEECCCE-----EEECCCCcCCCH
Confidence            455679999999999999999887667999999999 79999999999999999999974322     88876 459999


Q ss_pred             hhHHhhhhcccCCC-Ccccccccc
Q psy10852        361 PSLLAFYKVHYLDT-SPLIKPATK  383 (563)
Q Consensus       361 ~~lv~~y~~~~~~~-~~l~~P~~~  383 (563)
                      .+||+||+.+++.. +.|..|+++
T Consensus        89 ~~LV~~y~~~~~~~~~~L~~P~~~  112 (124)
T 2eob_A           89 VELVSYYEKHALYRKMRLRYPVTP  112 (124)
T ss_dssp             HHHHHHHTTSCSSSSCCSCEECCH
T ss_pred             HHHHHHHhhCCCCCCcCCCCcCCc
Confidence            99999999988754 568888865

>3eaz_A Tyrosine-protein kinase CSK; SH2, disulfide, oxidized reduced, ATP-binding, cell membrane, cytoplasm, membrane, nucleotide-binding, phosphoprotein; 1.31A {Homo sapiens} PDB: 3eac_A

Probab=99.64  E-value=8e-16  Score=128.25  Aligned_cols=95  Identities=33%  Similarity=0.580  Sum_probs=81.8

Q ss_pred             CCCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeC-CcccCChhh
Q psy10852        284 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDLPS  362 (563)
Q Consensus       284 ~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~-~~~f~sl~~  362 (563)
                      +..+||||.|+|.+|+.+|.. ..+|+||||.|++.+|.|+||++.++.++|++|...+.     .|.+. ...|+|+.+
T Consensus         6 ~~~~Wyhg~isr~~Ae~lL~~-~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~g-----~~~l~~~~~F~sl~~   79 (106)
T 3eaz_A            6 SLMPWFHGKITREQAERLLYP-PETGLFLVRESTNYPGDYTLCVSSDGKVEHYRIMYHAS-----KLSIDEEVYFENLMQ   79 (106)
T ss_dssp             GGCTTBCCSCCHHHHHHHTCS-CCTTEEEEEECTTSTTCEEEEEEETTEEEEEECEEETT-----EEESSSSSCBSSHHH
T ss_pred             ccCCCcCCCCCHHHHHHHhCC-CCCCEEEEEECCCCCCcEEEEEEeCCceEEEEEEecCC-----EEEECCCCccCCHHH
Confidence            345899999999999999975 46799999999999999999999999999999987533     28886 589999999


Q ss_pred             HHhhhhcccCCC-Cccccccccc
Q psy10852        363 LLAFYKVHYLDT-SPLIKPATKT  384 (563)
Q Consensus       363 lv~~y~~~~~~~-~~l~~P~~~~  384 (563)
                      ||+||+.++... +.|..|+++.
T Consensus        80 Lv~~y~~~~~gl~~~L~~P~~~~  102 (106)
T 3eaz_A           80 LVEHYTSDADGLCTRLIKPKVME  102 (106)
T ss_dssp             HHHHHHHCCTTSSSCCCEECCCC
T ss_pred             HHHHHhhCCCCCCeecCCcCCCC
Confidence            999999987654 5688888763

>2cs0_A Hematopoietic SH2 domain containing; ALX, FLJ14886, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.93.1.1

Probab=99.63  E-value=1.9e-15  Score=128.47  Aligned_cols=98  Identities=21%  Similarity=0.513  Sum_probs=83.2

Q ss_pred             CCCCCCCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeC--Cccc
Q psy10852        280 FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG--DKTF  357 (563)
Q Consensus       280 ~~~~~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~--~~~f  357 (563)
                      +.......||||.|+|.+|+.+|. ...+|+||||.|++.++ |+|+++.++.++|++|....++    +|.+.  ...|
T Consensus        10 ~~~~~~~~WyhG~isR~~Ae~lL~-~~~~G~FLVR~S~~~~~-y~LSv~~~~~v~H~~I~~~~~g----~~~l~~~~~~F   83 (119)
T 2cs0_A           10 LAQDGVPEWFHGAISREDAENLLE-SQPLGSFLIRVSHSHVG-YTLSYKAQSSCCHFMVKLLDDG----TFMIPGEKVAH   83 (119)
T ss_dssp             CCSSSCCSSBCSSCCHHHHHHHHH-TSCTTCEEEEECSSSSS-EEEEECCSSSCEEEEEEECTTS----CEECTTCSCCB
T ss_pred             hccccCCCccccCCCHHHHHHHhc-CCCCCEEEEEecCCCCC-EEEEEEECCEEEEEEEEEcCCC----cEEEecCCCcC
Confidence            344566799999999999999996 45679999999999888 9999999999999999987543    27774  4899


Q ss_pred             CChhhHHhhhhcccCC--CCcccccccc
Q psy10852        358 SDLPSLLAFYKVHYLD--TSPLIKPATK  383 (563)
Q Consensus       358 ~sl~~lv~~y~~~~~~--~~~l~~P~~~  383 (563)
                      +|+.+||+||+.+++.  .+.|..|+++
T Consensus        84 ~sl~eLV~~y~~~~l~~~~~~L~~P~~~  111 (119)
T 2cs0_A           84 TSLDALVTFHQQKPIEPRRELLTQPCRQ  111 (119)
T ss_dssp             SSHHHHHHHHTTSCCSSCCCCCCSBCCC
T ss_pred             CCHHHHHHHHhhCcCCCCCCEeCccCCC
Confidence            9999999999998875  4668888865

>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1ka7_A

Probab=99.63  E-value=9.4e-16  Score=132.13  Aligned_cols=95  Identities=23%  Similarity=0.474  Sum_probs=81.6

Q ss_pred             CCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeC------CcccC
Q psy10852        285 RNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG------DKTFS  358 (563)
Q Consensus       285 ~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~------~~~f~  358 (563)
                      ...||||.|+|.+|+.+|.....+|+||||.|++.+|.|+||++.++.++||+|....++    .|.+.      ...|+
T Consensus         3 ~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g----~~~l~~~~g~~~~~F~   78 (128)
T 1ka6_A            3 AVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETG----SWSAETAPGVHKRYFR   78 (128)
T ss_dssp             CCSSBCCSCCHHHHHHHHHHHCCTTCEEEEECSSSTTCEEEEEESSSCEEEEEEEECTTS----CEEEECSTTSCCCEES
T ss_pred             CCcccCCCCCHHHHHHHHhcCCCCCEEEEeecCCCCCCEEEEEEeCCEEEEEEEEECCCC----eEEEeecCCCCCCccC
Confidence            458999999999999999864467999999999989999999999999999999975433    27776      48999


Q ss_pred             ChhhHHhhhhcccCCC-Ccccccccc
Q psy10852        359 DLPSLLAFYKVHYLDT-SPLIKPATK  383 (563)
Q Consensus       359 sl~~lv~~y~~~~~~~-~~l~~P~~~  383 (563)
                      |+.+||+||+.+.... +.|..|+++
T Consensus        79 sl~~LV~~y~~~~~gl~~~L~~P~~~  104 (128)
T 1ka6_A           79 KIKNLISAFQKPDQGIVIPLQYPVEK  104 (128)
T ss_dssp             SHHHHHHHTTSSCSSSSSCCCSBCCS
T ss_pred             CHHHHHHHHhhCCCCCcEEcCCcCCC
Confidence            9999999999887544 568888876

>1wqu_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; SH2 domain, feline sarcoma oncogene, structural genomics; NMR {Homo sapiens} PDB: 2dcr_A

Probab=99.63  E-value=5.4e-16  Score=130.68  Aligned_cols=90  Identities=28%  Similarity=0.517  Sum_probs=77.4

Q ss_pred             CCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeCCcccCChhhHH
Q psy10852        285 RNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLL  364 (563)
Q Consensus       285 ~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~~~~f~sl~~lv  364 (563)
                      ..+||||.|+|.+|+.+|.   .+|+||||.|++.+ .|+||++.++.++|++|...+..     |.+.+..|+|+.+||
T Consensus        15 ~~~WyhG~isR~eAe~lL~---~~G~FLVR~S~~~~-~y~LSv~~~~~v~H~~I~~~~g~-----~~~~~~~F~sl~~LV   85 (114)
T 1wqu_A           15 EQLWYHGAIPRAEVAELLV---HSGDFLVRESQGKQ-EYVLSVLWDGLPRHFIIQSLDNL-----YRLEGEGFPSIPLLI   85 (114)
T ss_dssp             GCTTEEESCCHHHHHTTCC---STTEEEEEECSSSC-CEEEEEEETTEEEEEECEECSSS-----EESSSCCBSSHHHHH
T ss_pred             cCCcEeeCCCHHHHHHHhc---cCCeEEEEEcCCCC-CEEEEEEECCEEEEEEEEecCCE-----EEECCCCCCCHHHHH
Confidence            4599999999999999997   37999999999977 99999999999999999876432     888889999999999


Q ss_pred             hhhhcccCC-----CCcccccccc
Q psy10852        365 AFYKVHYLD-----TSPLIKPATK  383 (563)
Q Consensus       365 ~~y~~~~~~-----~~~l~~P~~~  383 (563)
                      +||+.+.+.     .+.|..|+++
T Consensus        86 ~~y~~~~~~~~~~~~~~L~~Pv~r  109 (114)
T 1wqu_A           86 DHLLSTQQPLTKKSGVVLHRAVPS  109 (114)
T ss_dssp             HHHHHHCCCSCTTTCCCCCEECCS
T ss_pred             HHHHHCCCCcCCCCCcEECcccCC
Confidence            999987442     3567777765

>1blj_A P55 BLK protein tyrosine kinase; signal transduction, transferase, phosphotransferase, phosphorylation; NMR {Mus musculus} SCOP: d.93.1.1 PDB: 1blk_A

Probab=99.63  E-value=9.5e-16  Score=129.66  Aligned_cols=98  Identities=30%  Similarity=0.538  Sum_probs=83.6

Q ss_pred             CCCCCCccccccCHHHHHHHHhc-CCCCCcEEEEecCCCCcceEEEEEe----CCeeEEEEEeeecCCCcceeEEeC-Cc
Q psy10852        282 PHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKE----NNKVSHYIINKITNTEQQTCYKIG-DK  355 (563)
Q Consensus       282 ~~~~~~w~~g~~sr~~A~~~l~~-~~~~G~FlvR~S~~~~g~~~ls~~~----~~~v~h~~I~~~~~~~~~~~~~i~-~~  355 (563)
                      ..+...||||.|+|.+|+.+|.. +..+|+||||.|++.+|.|+||++.    ++.++|++|...+++    +|++. ..
T Consensus         8 ~l~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~v~H~~I~~~~~g----~~~l~~~~   83 (114)
T 1blj_A            8 TLEVEKWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEVVKHYKIRSLDNG----GYYISPRI   83 (114)
T ss_dssp             CSCCSSSBCCSCCHHHHHHHHSSTTCCTTCEEBCBCTTCSSCEEEEECBCCTTTCBCCCEEEEEETTT----EEEEETTE
T ss_pred             ccccCCccCCCCCHHHHHHHHhhCCCCCceEEEEeCCCCCCCEEEEEEEecCCCCcEEEEEEEEcCCC----CEEECCCc
Confidence            34566999999999999999986 3678999999999999999999998    689999999987543    37775 58


Q ss_pred             ccCChhhHHhhhhcccCCC-Ccccccccc
Q psy10852        356 TFSDLPSLLAFYKVHYLDT-SPLIKPATK  383 (563)
Q Consensus       356 ~f~sl~~lv~~y~~~~~~~-~~l~~P~~~  383 (563)
                      .|+|+.+||+||+.+.... +.|..|+++
T Consensus        84 ~F~sl~~LV~~y~~~~~~l~~~L~~p~~~  112 (114)
T 1blj_A           84 TFPTLQALVQHYSKKGDGLCQKLTLPCVN  112 (114)
T ss_dssp             EESSHHHHHHHHHHCCSSSSSCCCCCSCC
T ss_pred             ccCCHHHHHHHhhhCCCCCceecCccCCC
Confidence            9999999999999887654 678888865

>2kk6_A Proto-oncogene tyrosine-protein kinase FER; methods development, SH2, NESG, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; NMR {Homo sapiens}

Probab=99.63  E-value=1.2e-15  Score=128.70  Aligned_cols=93  Identities=33%  Similarity=0.588  Sum_probs=80.0

Q ss_pred             CCCCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeCCcccCChhh
Q psy10852        283 HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPS  362 (563)
Q Consensus       283 ~~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~~~~f~sl~~  362 (563)
                      ....+||+|.|+|++|+++|.   .+|+||||.|++.+|.|+||++.++.++||+|...+.     .|.+.+..|+|+.+
T Consensus        14 ~~~~~WyhG~isR~eAe~lL~---~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~g-----~y~~~~~~F~sl~e   85 (116)
T 2kk6_A           14 LAEQDWYHGAIPRIEAQELLK---KQGDFLVRESHGKPGEYVLSVYSDGQRRHFIIQYVDN-----MYRFEGTGFSNIPQ   85 (116)
T ss_dssp             TTTCTTEEESCCHHHHHHTCC---STTCEEEEECTTCTTCEEEEEEETTEEEEEEEEEETT-----EEESSSCEESCHHH
T ss_pred             cccCCCccCCCCHHHHHHHhc---cCCcEEEEECCCCCCcEEEEEEECCeEEEEEEEecCC-----EEEECCCEeCCHHH
Confidence            345699999999999999997   4799999999999999999999999999999996432     28888899999999


Q ss_pred             HHhhhhcccCC-----CCcccccccc
Q psy10852        363 LLAFYKVHYLD-----TSPLIKPATK  383 (563)
Q Consensus       363 lv~~y~~~~~~-----~~~l~~P~~~  383 (563)
                      ||+||+.+.+.     ...|..|+++
T Consensus        86 LV~~y~~~~~~i~~~~~~~L~~Pv~r  111 (116)
T 2kk6_A           86 LIDHHYTTKQVITKKSGVVLLNPIPK  111 (116)
T ss_dssp             HHHHHHHTTCCSCTTTTCCCCSCCCC
T ss_pred             HHHHHhhCCCCccCCCCCeECcccCC
Confidence            99999988552     3557788765

>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens}

Probab=99.62  E-value=1.3e-15  Score=127.72  Aligned_cols=97  Identities=22%  Similarity=0.487  Sum_probs=80.4

Q ss_pred             CCCCCCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEe------CCeeEEEEEeeecCCCcceeEEeC-
Q psy10852        281 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKE------NNKVSHYIINKITNTEQQTCYKIG-  353 (563)
Q Consensus       281 ~~~~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~------~~~v~h~~I~~~~~~~~~~~~~i~-  353 (563)
                      +..+..+||||.|+|.+|+.+|.....+|+||||.| +.++.|+||++.      ++.++||+|....++    .|++. 
T Consensus         6 ~~l~~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S-~~~g~y~LSv~~~~~~~~~~~v~H~~I~~~~~g----~~~l~~   80 (110)
T 2ekx_A            6 SGLDDYDWFAGNISRSQSEQLLRQKGKEGAFMVRNS-SQVGMYTVSLFSKAVNDKKGTVKHYHVHTNAEN----KLYLAE   80 (110)
T ss_dssp             SCTTTSSSBCCSCCHHHHHHHHHHTCCTTEEEEEEC-SSTTCEEEEECCCCSSCSSCCCEEEECEECTTC----CEESST
T ss_pred             CcccCCCeecCCCCHHHHHHHHhccCCCceEEEEec-CCCCCEEEEEEeccccCCCCcEEEEEEEECCCC----CEEECC
Confidence            345667999999999999999987657799999999 569999999997      468999999986543    28885 


Q ss_pred             CcccCChhhHHhhhhcccCCC-Cccccccc
Q psy10852        354 DKTFSDLPSLLAFYKVHYLDT-SPLIKPAT  382 (563)
Q Consensus       354 ~~~f~sl~~lv~~y~~~~~~~-~~l~~P~~  382 (563)
                      ...|+|+.+||+||+.+.... +.|..|++
T Consensus        81 ~~~F~sl~~LV~~y~~~~~~l~~~L~~Pv~  110 (110)
T 2ekx_A           81 NYCFDSIPKLIHYHQHNSAGMITRLRHPVS  110 (110)
T ss_dssp             TCCCSCHHHHHHHHHHSCCSSSCCCCEECC
T ss_pred             CCccCCHHHHHHHHeeCCCCCceecCccCC
Confidence            489999999999999887553 55777763

>3s9k_A Tyrosine-protein kinase ITK/TSK; proline isomerization, CIS proline, domain swapped dimer, SH transferase; HET: CIT; 2.35A {Mus musculus} PDB: 2etz_A* 2eu0_A* 1lui_A 1luk_A 1lum_A 1lun_A 2k79_B 2k7a_B

Probab=99.62  E-value=1.7e-15  Score=128.97  Aligned_cols=98  Identities=26%  Similarity=0.494  Sum_probs=80.2

Q ss_pred             CCCCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeC------CeeEEEEEeeecCCCcceeEEeC-Cc
Q psy10852        283 HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKEN------NKVSHYIINKITNTEQQTCYKIG-DK  355 (563)
Q Consensus       283 ~~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~------~~v~h~~I~~~~~~~~~~~~~i~-~~  355 (563)
                      .+..+||||.|+|.+|+.+|.....+|+||||.| +.++.|+||++..      +.++||+|......++.  |++. ..
T Consensus         6 l~~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S-~~~g~y~LSv~~~~~~~~~~~v~H~~I~~~~~~~g~--~~~~~~~   82 (118)
T 3s9k_A            6 LETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDS-RTPGTYTVSVFTKAIISENPCIKHYHIKETNDSPKR--YYVAEKY   82 (118)
T ss_dssp             GGGSTTBCTTCCHHHHHHHHHHHCCTTCEEEEEC-SSTTCEEEEEEECCSCSSSCEEEEEEEEECSCSSCC--EEEECSC
T ss_pred             cccCceecCCCCHHHHHHHHHhcCCCCeEEEEee-CCCCCEEEEEEecccccCCCceEEEEEeEEECCCCC--EEECCCc
Confidence            3456999999999999999987656899999999 7899999999986      89999999532222233  6664 57


Q ss_pred             ccCChhhHHhhhhcccCCC-Ccccccccc
Q psy10852        356 TFSDLPSLLAFYKVHYLDT-SPLIKPATK  383 (563)
Q Consensus       356 ~f~sl~~lv~~y~~~~~~~-~~l~~P~~~  383 (563)
                      .|+|+.+||+||+.++... +.|..|+++
T Consensus        83 ~F~sl~~LV~~y~~~~~~l~~~L~~Pv~~  111 (118)
T 3s9k_A           83 VFDSIPLLIQYHQYNGGGLVTRLRYPVCG  111 (118)
T ss_dssp             CCSCHHHHHHHHHHCCTTSSSCCCCCCCC
T ss_pred             ccCCHHHHHHHheeCCCCCccCCCCcCCC
Confidence            9999999999999988654 568888875

>2dlz_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=2e-15  Score=128.09  Aligned_cols=95  Identities=26%  Similarity=0.494  Sum_probs=81.5

Q ss_pred             CCCCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeC-CcccCChh
Q psy10852        283 HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDLP  361 (563)
Q Consensus       283 ~~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~-~~~f~sl~  361 (563)
                      .....||||.|+|.+|+.+|... .+|+||||.|++.++.|+||++.++.++||+|...+.     +|.+. ...|+|+.
T Consensus        13 l~~~~WyhG~isR~~Ae~lL~~~-~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~g-----~~~l~~~~~F~sl~   86 (118)
T 2dlz_A           13 YTAYPWFAGNMERQQTDNLLKSH-ASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKDN-----WIHITEAKKFDSLL   86 (118)
T ss_dssp             GGGSTTEEESCCHHHHHHHHHHS-CTTBEEEECCSCSSCCEEEEEECSSSEEEEEEEEETT-----EEESTTSCCBSSHH
T ss_pred             cccCCceecCCCHHHHHHHhcCC-CCCEEEEEeCCCCCCCEEEEEEECCcEEEEEEEEcCC-----EEEEeCCcccCCHH
Confidence            44569999999999999999875 6799999999999999999999999999999998533     38887 48999999


Q ss_pred             hHHhhhhcccCCC------Ccccccccc
Q psy10852        362 SLLAFYKVHYLDT------SPLIKPATK  383 (563)
Q Consensus       362 ~lv~~y~~~~~~~------~~l~~P~~~  383 (563)
                      +||+||+.+++..      +.|..|+++
T Consensus        87 ~LV~~y~~~~l~~~~~gl~~~L~~Pv~~  114 (118)
T 2dlz_A           87 ELVEYYQCHSLKESFKQLDTTLKYPYSG  114 (118)
T ss_dssp             HHHHHHTTSCTTTTCTTCCCCCCBCCSC
T ss_pred             HHHHHHhhCcccccCCCcccEeCCcCCC
Confidence            9999999987632      457777764

>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain, protein protein interactions, PTR residues, HYDR peptide complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A* 1aya_A* 1ayb_A* 1ayc_A* 1ayd_A

Probab=99.62  E-value=1.3e-15  Score=127.55  Aligned_cols=95  Identities=28%  Similarity=0.515  Sum_probs=78.3

Q ss_pred             CCCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEe-CCcccCChhh
Q psy10852        284 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKI-GDKTFSDLPS  362 (563)
Q Consensus       284 ~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i-~~~~f~sl~~  362 (563)
                      +..+||||.|+|++|+++|.....+|+||||.|++.+|.|+||++.++.++|++|...+..     |.+ +...|+|+.+
T Consensus         5 ~~~~Wyhg~isr~~Ae~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~-----~~~~~~~~F~sl~~   79 (109)
T 3tkz_A            5 TSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDY-----YDLYGGEKFATLAE   79 (109)
T ss_dssp             --CCSBCTTCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECSSC-----EESSSSCCBSSHHH
T ss_pred             ccCCceecCCCHHHHHHHHhcCCCCCEEEEEecCCCCCCEEEEEEECCEEEEEEEEeCCCE-----EEecCCcccCCHHH
Confidence            4569999999999999999875468999999999999999999999999999999874322     766 4689999999


Q ss_pred             HHhhhhcccCC-----C--Ccccccccc
Q psy10852        363 LLAFYKVHYLD-----T--SPLIKPATK  383 (563)
Q Consensus       363 lv~~y~~~~~~-----~--~~l~~P~~~  383 (563)
                      ||+||+.+++.     .  +.|..|+++
T Consensus        80 LV~~y~~~~~~l~~~~gl~~~L~~Pv~~  107 (109)
T 3tkz_A           80 LVQYYMEHHGQLKEKNGDVIELKYPLNC  107 (109)
T ss_dssp             HHHHHHHSTTSEEETTSCBCCCCEECC-
T ss_pred             HHHHHHhCcCccccCCCceEECCCcccC
Confidence            99999987642     1  467777654

>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide binding protein; HET: PTR; 1.80A {Mus musculus} SCOP: d.93.1.1 PDB: 1r1q_A* 1r1s_A*

Probab=99.61  E-value=1.8e-15  Score=124.49  Aligned_cols=85  Identities=22%  Similarity=0.543  Sum_probs=75.7

Q ss_pred             CCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeCCcccCChhhHH
Q psy10852        285 RNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLL  364 (563)
Q Consensus       285 ~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~~~~f~sl~~lv  364 (563)
                      ..+||||.|+|.+|+.+|... .+|+||||.|++.+|.|+||++.++.++|++|....++    .|.+.+..|+|+.+||
T Consensus         8 ~~~Wyhg~isR~~Ae~lL~~~-~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g----~~~l~~~~F~sl~~LV   82 (100)
T 1r1p_A            8 FPEWFHEGLSRHQAENLLMGK-DIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTKG----NYFLWTEKFPSLNKLV   82 (100)
T ss_dssp             TTTTSCTTCCHHHHHHHHHTS-CTTBEEEEECSSSTTCEEEEEECSSSEEEEECEECTTC----CEESSSCEESSHHHHH
T ss_pred             cCCccccCCCHHHHHHHhcCC-CCCEEEEEecCCCCCCEEEEEEECCEEEEEEEEEcCCC----CEEEeCCEeCCHHHHH
Confidence            359999999999999999876 67999999999999999999999999999999986443    2888889999999999


Q ss_pred             hhhhcccCCC
Q psy10852        365 AFYKVHYLDT  374 (563)
Q Consensus       365 ~~y~~~~~~~  374 (563)
                      +||+.+++..
T Consensus        83 ~~y~~~~l~~   92 (100)
T 1r1p_A           83 DYYRTTSISK   92 (100)
T ss_dssp             HHHTTSCSSS
T ss_pred             HHHHhCCCCC
Confidence            9999887643

>2ge9_A Tyrosine-protein kinase BTK; SH2 domain, structure, transferase; NMR {Homo sapiens}

Probab=99.61  E-value=2.8e-15  Score=128.52  Aligned_cols=98  Identities=29%  Similarity=0.549  Sum_probs=82.1

Q ss_pred             CCCCCCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEe------CCeeEEEEEeeecCCCcceeEEeCC
Q psy10852        281 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKE------NNKVSHYIINKITNTEQQTCYKIGD  354 (563)
Q Consensus       281 ~~~~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~------~~~v~h~~I~~~~~~~~~~~~~i~~  354 (563)
                      +......||+|.|+|.+|+.+|.....+|+||||.| +.+|.|+||++.      ++.|+||+|...+++    .|++.+
T Consensus         6 ~~l~~~~WyhG~isR~eAe~lL~~~g~~G~FLVR~S-s~~g~y~LSv~~~~~~~~~~~v~H~~I~~~~~g----~~~l~~   80 (125)
T 2ge9_A            6 DSIEMYEWYSKHMTRSQAEQLLKQEGKEGGFIVRDS-SKAGKYTVSVFAKSTGDPQGVIRHYVVCSTPQS----QYYLAE   80 (125)
T ss_dssp             CSSCCSSSEETTCCHHHHHHHHHHHTCTTEEEEEEC-SSSCCEEEEEEESSSSSTTCEEEEEECEEETTT----EEESST
T ss_pred             cccccCCccccCCCHHHHHHHHhhcCCCceEEEEec-CCCCCEEEEEEeccccCCCCeEEEEEEEEcCCC----CEEECC
Confidence            345667999999999999999987646799999999 569999999996      479999999987544    378864


Q ss_pred             -cccCChhhHHhhhhcccCCC-Ccccccccc
Q psy10852        355 -KTFSDLPSLLAFYKVHYLDT-SPLIKPATK  383 (563)
Q Consensus       355 -~~f~sl~~lv~~y~~~~~~~-~~l~~P~~~  383 (563)
                       ..|+|+.+||+||+.+.... +.|..|+++
T Consensus        81 ~~~F~sl~eLV~~y~~~~~~l~~~L~~P~~~  111 (125)
T 2ge9_A           81 KHLFSTIPELINYHQHNSAGLISRLKYPVSQ  111 (125)
T ss_dssp             TSCBSSHHHHHHHHHCCCTTCSCCSSEECCS
T ss_pred             CCcCCCHHHHHHHhhhCCCCCceeCCCccCC
Confidence             89999999999999887543 568888765

>1aot_F FYN protein-tyrosine kinase; SH2 domain, signal transduction, peptide complex, complex (proto-oncogene/early protein); HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1aou_F*

Probab=99.61  E-value=6.7e-16  Score=128.83  Aligned_cols=95  Identities=36%  Similarity=0.661  Sum_probs=81.0

Q ss_pred             CCCccccccCHHHHHHHHhc-CCCCCcEEEEecCCCCcceEEEEEe-----CCeeEEEEEeeecCCCcceeEEeC-Cccc
Q psy10852        285 RNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKITNTEQQTCYKIG-DKTF  357 (563)
Q Consensus       285 ~~~w~~g~~sr~~A~~~l~~-~~~~G~FlvR~S~~~~g~~~ls~~~-----~~~v~h~~I~~~~~~~~~~~~~i~-~~~f  357 (563)
                      ...||||.|+|.+|+.+|.. +..+|+||||.|++.+|.|+||++.     ++.++|++|...+++    +|++. ...|
T Consensus         4 ~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~~~LSv~~~~~~~~~~v~H~~I~~~~~g----~~~l~~~~~F   79 (106)
T 1aot_F            4 AEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKLDNG----GYYITTRAQF   79 (106)
T ss_dssp             SSSSCCBSCCHHHHHHHHHTTTCCTTEECCBCBSSSSSBBCCEEECCBTTTBCCEEECCBEEETTT----EEEEETTEEE
T ss_pred             cCccCCCCCCHHHHHHHHhhCCCCCcEEEEEeCCCCCCCEEEEEEecccCCCCcEEEEEEEEeCCC----CEEECCCCcc
Confidence            45999999999999999986 4578999999999999999999996     679999999986543    37775 5899


Q ss_pred             CChhhHHhhhhcccCCC-Ccccccccc
Q psy10852        358 SDLPSLLAFYKVHYLDT-SPLIKPATK  383 (563)
Q Consensus       358 ~sl~~lv~~y~~~~~~~-~~l~~P~~~  383 (563)
                      +|+.+||+||+.+.... +.|..|+++
T Consensus        80 ~sl~~LV~~y~~~~~~l~~~L~~p~~~  106 (106)
T 1aot_F           80 ETLQQLVQHYSERAAGLSSRLVVPSHK  106 (106)
T ss_dssp             SSHHHHHHHHTTCCTTSSSCSCSSCCC
T ss_pred             CCHHHHHHHhccCCCCCcEeecccCCC
Confidence            99999999999887554 568888864

>1h9o_A Phosphatidylinositol 3-kinase; transferase/receptor, complex (phosphotransferase/receptor), phosphotransferase, SH2 domain; HET: PTR; 1.79A {Homo sapiens} SCOP: d.93.1.1 PDB: 1pic_A* 1bfi_A 1bfj_A 1qad_A

Probab=99.61  E-value=1.8e-15  Score=127.33  Aligned_cols=96  Identities=31%  Similarity=0.517  Sum_probs=79.8

Q ss_pred             CCCCCCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeC--CcccC
Q psy10852        281 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG--DKTFS  358 (563)
Q Consensus       281 ~~~~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~--~~~f~  358 (563)
                      +.++...||||.|+|.+|+.+|.. ..+|+||||.| +.++.|+||++.++.++|++|...+++     +.+.  ...|+
T Consensus         5 ~~~~~~~Wyhg~isR~~Ae~lL~~-~~~G~FLVR~S-~~~g~y~LSv~~~~~v~H~~I~~~~~g-----~~~~~~~~~F~   77 (112)
T 1h9o_A            5 PHHDEKTWNVGSSNRNKAENLLRG-KRDGTFLVRES-SKQGCYACSVVVDGEVKHCVINKTATG-----YGFAEPYNLYS   77 (112)
T ss_dssp             GGGSGGGTBCCSCCHHHHHHHHTT-CCTTEEEEEEC-SSTTCEEEEEEETTEEEEEEEEEETTE-----EESSTTCCCBS
T ss_pred             ccccCCCcccCCCCHHHHHHHhcC-CCCceEEEeec-CCCCCEEEEEEECCEEEEEEEEEcCCc-----eEEeCCCCCcC
Confidence            345567999999999999999974 57799999999 789999999999999999999987654     5554  37999


Q ss_pred             ChhhHHhhhhcccCC------CCcccccccc
Q psy10852        359 DLPSLLAFYKVHYLD------TSPLIKPATK  383 (563)
Q Consensus       359 sl~~lv~~y~~~~~~------~~~l~~P~~~  383 (563)
                      |+.+||+||+.+++.      .+.|..|+++
T Consensus        78 sl~~LV~~y~~~~l~~~~~gl~~~L~~P~~~  108 (112)
T 1h9o_A           78 SLKELVLHYQHTSLVQHNDSLNVTLAYPVYA  108 (112)
T ss_dssp             SHHHHHHHHHHSCGGGTCTTCCCCCCEETTC
T ss_pred             CHHHHHHHHhhCcccccCCCcCeeCCCCcCC
Confidence            999999999986532      2567777765

>2aug_A Growth factor receptor-bound protein 14; phosphorylation, SH2 domain, signaling protein; 2.30A {Homo sapiens}

Probab=99.61  E-value=3.3e-15  Score=127.96  Aligned_cols=100  Identities=25%  Similarity=0.499  Sum_probs=81.3

Q ss_pred             CCCCCccccccCHHHHHHHHhcC-CCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeC--CcccCC
Q psy10852        283 HDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG--DKTFSD  359 (563)
Q Consensus       283 ~~~~~w~~g~~sr~~A~~~l~~~-~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~--~~~f~s  359 (563)
                      +....||+|.|+|.+|+++|... ..+|+||||.|++.++.|+||++.++.++||+|...+. ++.+.+.++  ...|+|
T Consensus        23 l~~~~WyhG~isR~eAe~lL~~~g~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~-~G~~~~~l~~~~~~F~S  101 (126)
T 2aug_A           23 HRSQPWFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTFVLSMSHGQKIKHFQIIPVED-DGEMFHTLDDGHTRFTD  101 (126)
T ss_dssp             GGGSTTEETTCCHHHHHHHHHTTTCCTTEEEEEECSSSSCCEEEEEEETTEEEEEEEEEEEE-TTEEEEESSTTSSCBSS
T ss_pred             cccCCcccCCCCHHHHHHHHhccCCCCCEEEEeecCCCCCCEEEEEEcCCeEEEEEEEEECC-CCeEEEEeCCCCCccCC
Confidence            34569999999999999999874 56899999999999999999999999999999998532 122212344  479999


Q ss_pred             hhhHHhhhhcccCCC-Ccccccccc
Q psy10852        360 LPSLLAFYKVHYLDT-SPLIKPATK  383 (563)
Q Consensus       360 l~~lv~~y~~~~~~~-~~l~~P~~~  383 (563)
                      +.+||+||+.+.+.. +.|..|+++
T Consensus       102 L~eLV~~y~~~~~~l~~~L~~P~~r  126 (126)
T 2aug_A          102 LIQLVEFYQLNKGVLPCKLKHYCAR  126 (126)
T ss_dssp             HHHHHHHHTTCCTTSSSCCCEECCC
T ss_pred             HHHHHHHHhhCCCCCceecCCCcCC
Confidence            999999999887654 568888764

>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_A 3t04_A 1ab2_A

Probab=99.61  E-value=2.6e-15  Score=126.42  Aligned_cols=94  Identities=30%  Similarity=0.482  Sum_probs=80.8

Q ss_pred             CCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeC-CcccCChhhH
Q psy10852        285 RNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDLPSL  363 (563)
Q Consensus       285 ~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~-~~~f~sl~~l  363 (563)
                      ..+||||.|+|.+|+.+|.. ..+|+||||.|++.+|.|+||++.++.++|++|....++    .|.+. +..|+|+.+|
T Consensus         4 ~~~Wyhg~isR~~Ae~lL~~-~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g----~~~~~~~~~F~sl~~L   78 (112)
T 3k2m_A            4 KHSWYHGPVSRNAAEYLLSS-GINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDG----KLYVSSESRFNTLAEL   78 (112)
T ss_dssp             GSTTEEESCCHHHHHHHTTT-CCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTS----CEESSTTCCBSSHHHH
T ss_pred             cCcceeeCCCHHHHHHHhcc-CCCceEEEEeCCCCCCCEEEEEEeCCcEEEEEEEECCCC----cEEECCCCeECCHHHH
Confidence            35899999999999999875 467999999999999999999999999999999986544    26664 6899999999


Q ss_pred             HhhhhcccCCC-Ccccccccc
Q psy10852        364 LAFYKVHYLDT-SPLIKPATK  383 (563)
Q Consensus       364 v~~y~~~~~~~-~~l~~P~~~  383 (563)
                      |+||+.+.... +.|..|+++
T Consensus        79 V~~y~~~~~~l~~~L~~P~~~   99 (112)
T 3k2m_A           79 VHHHSTVADGLITTLHYPAPK   99 (112)
T ss_dssp             HHHHHHCCTTSSSCCCEECCC
T ss_pred             HHHHhhCCCCCccCCCCCCCC
Confidence            99999886654 568888876

>2ecd_A Tyrosine-protein kinase ABL2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=2.6e-15  Score=127.58  Aligned_cols=97  Identities=30%  Similarity=0.481  Sum_probs=81.9

Q ss_pred             CCCCCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeC-CcccCCh
Q psy10852        282 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDL  360 (563)
Q Consensus       282 ~~~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~-~~~f~sl  360 (563)
                      ..+...||||.|+|.+|+.+|.. ..+|+||||.|++.+|.|+||++.++.++||+|....++  .  |++. ...|+|+
T Consensus        12 ~l~~~~WyhG~isR~~Ae~lL~~-~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g--~--~~l~~~~~F~sl   86 (119)
T 2ecd_A           12 SLEKHSWYHGPVSRSAAEYLLSS-LINGSFLVRESESSPGQLSISLRYEGRVYHYRINTTADG--K--VYVTAESRFSTL   86 (119)
T ss_dssp             CCCCSSSEEEECCHHHHHHHHHT-SCTTBEEEEEESSSTTEEEEEEECSSCEEEECCCCCSSS--C--CCCCSSCCCSSH
T ss_pred             ccccCccccCCCCHHHHHHHhcC-CCCCeEEEEeCCCCCCCEEEEEEECCeEEEEEEEEcCCC--C--EEEcCCCcCCCH
Confidence            34556999999999999999975 457999999999999999999999999999999875443  2  5664 6899999


Q ss_pred             hhHHhhhhcccCCC-Ccccccccc
Q psy10852        361 PSLLAFYKVHYLDT-SPLIKPATK  383 (563)
Q Consensus       361 ~~lv~~y~~~~~~~-~~l~~P~~~  383 (563)
                      .+||+||+.+.... +.|..|+++
T Consensus        87 ~~LV~~y~~~~~gl~~~L~~P~~~  110 (119)
T 2ecd_A           87 AELVHHHSTVADGLVTTLHYPAPK  110 (119)
T ss_dssp             HHHHHHHHHCCTTSSSCCCBCCSS
T ss_pred             HHHHHHHhhCCCCCceECCCccCC
Confidence            99999999886543 668888876

>1mil_A SHC adaptor protein; SH2 domain, phosphorylation, collagen, growth regulation, transforming protein, alternative initiation; 2.70A {Homo sapiens} SCOP: d.93.1.1 PDB: 1tce_A*

Probab=99.61  E-value=1.2e-15  Score=126.61  Aligned_cols=92  Identities=28%  Similarity=0.498  Sum_probs=77.7

Q ss_pred             CCCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeCCcccCChhhH
Q psy10852        284 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSL  363 (563)
Q Consensus       284 ~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~~~~f~sl~~l  363 (563)
                      ...+||||.|+|.+|+.+|.   .+|+||||.|++.+|.|+||++.++.++|++|...+   +  .|.+.+..|+|+.+|
T Consensus         5 ~~~~Wyhg~isR~~Ae~lL~---~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~---g--~~~~~~~~F~sl~~L   76 (104)
T 1mil_A            5 RGEPWFHGKLSRREAEALLQ---LNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPE---G--VVRTKDHRFESVSHL   76 (104)
T ss_dssp             TTCTTBCSSCCHHHHHTTCC---STTEEEEEECCSSCSSEEEEEEETTEEEEEEEBCTT---S--SEECSSCEESSHHHH
T ss_pred             ccCCcCCCCCCHHHHHHHhc---cCCcEEEEeCCCCCCCEEEEEEECCEEEEEEEEeCC---C--EEEECCceeCCHHHH
Confidence            45699999999999999997   479999999999999999999999999999996322   2  288888999999999


Q ss_pred             HhhhhcccCC----C--Ccccccccc
Q psy10852        364 LAFYKVHYLD----T--SPLIKPATK  383 (563)
Q Consensus       364 v~~y~~~~~~----~--~~l~~P~~~  383 (563)
                      |+||+.+.+.    +  +.|..|+++
T Consensus        77 I~~y~~~~~p~~~~g~~~~L~~Pv~r  102 (104)
T 1mil_A           77 ISYHMDNHLPIISAGSELCLQQPVER  102 (104)
T ss_dssp             HHHHHHHTCCEEETTEEECCCEECCC
T ss_pred             HHHHhhCCCccccCCceEEeCccCCC
Confidence            9999988652    2  356777654

>2lnw_A VAV-2, guanine nucleotide exchange factor VAV2; signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2lnx_A

Probab=99.60  E-value=3.6e-15  Score=127.08  Aligned_cols=96  Identities=26%  Similarity=0.478  Sum_probs=81.1

Q ss_pred             CCCCCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeC-CcccCCh
Q psy10852        282 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDL  360 (563)
Q Consensus       282 ~~~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~-~~~f~sl  360 (563)
                      .....+||+|.|+|.+|+++|... .+|+||||.|++.++.|+||++.++.++|++|...+.+     |++. ...|+|+
T Consensus        18 ~l~~~~WyhG~isR~eAe~lL~~~-~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~-----~~l~~~~~F~sl   91 (122)
T 2lnw_A           18 DYTAYPWFAGNMERQQTDNLLKSH-ASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKDNW-----IHITEAKKFDSL   91 (122)
T ss_dssp             CSTTSTTBCCSCCHHHHHHHHHHS-CTTBEEEEECCCSSEEEEEEEECSSCEEEEEEEEETTE-----EESSSSCCBSSH
T ss_pred             CcccCcCCCcCCCHHHHHHHhcCC-CCCeEEEEeCCCCCCcEEEEEEeCCcEEEEEEEEcCCE-----EEECCCCeECCH
Confidence            345669999999999999999874 57999999999999999999999999999999976443     7886 4899999


Q ss_pred             hhHHhhhhcccCC----C--Ccccccccc
Q psy10852        361 PSLLAFYKVHYLD----T--SPLIKPATK  383 (563)
Q Consensus       361 ~~lv~~y~~~~~~----~--~~l~~P~~~  383 (563)
                      .+||+||+.+++.    .  +.|..|++.
T Consensus        92 ~eLV~~y~~~~l~~~~~~l~~~L~~P~~~  120 (122)
T 2lnw_A           92 LELVEYYQCHSLKESFKQLDTTLKYPYKS  120 (122)
T ss_dssp             HHHHHHHHHSCGGGTCTTCCCCCCBCSSS
T ss_pred             HHHHHHHhhCcCcccCCCcCeeeCCcCCC
Confidence            9999999998652    1  457777654

>2iug_A Phosphatidylinositol 3-kinase regulatory alpha subunit; transferase, polymorphism, UBL conjugation, phosphorylation, SH2, PI3K, SH2 domain; 1.89A {Homo sapiens} PDB: 2iuh_A* 2iui_A* 1fu5_A* 1fu6_A 1oo3_A 1oo4_A* 2pna_A 2pnb_A

Probab=99.60  E-value=4.2e-15  Score=126.59  Aligned_cols=93  Identities=29%  Similarity=0.522  Sum_probs=80.3

Q ss_pred             CCCccccccCHHHHHHHHhcCCCCCcEEEEecCCC-CcceEEEEEeCCeeEEEEEeeecCCCcceeEEeC-CcccCChhh
Q psy10852        285 RNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTI-LGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDLPS  362 (563)
Q Consensus       285 ~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~-~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~-~~~f~sl~~  362 (563)
                      ..+||||.|+|.+|+.+|.. ..+|+||||.|++. ++.|+||++.++.++|++|...+.     +|.+. ...|+|+.+
T Consensus        10 ~~~WyhG~isR~eAe~lL~~-~~~G~FLVR~S~~~~~g~y~LSv~~~~~v~H~~I~~~~g-----~~~l~~~~~F~sl~~   83 (120)
T 2iug_A           10 NAEWYWGDISREEVNEKLRD-TADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDG-----KYGFSDPLTFSSVVE   83 (120)
T ss_dssp             TCTTBCCSCCHHHHHHHHTT-CCTTEEEEEECSSGGGCSEEEEEEETTEEEEEEEEEETT-----EEESSSSCCBSSHHH
T ss_pred             cCCccccCCCHHHHHHHhcC-CCCcEEEEECCCCCCCCcEEEEEEECCEEEEEEEEEcCC-----EEEECCCCccCCHHH
Confidence            45999999999999999986 46799999999998 999999999999999999998633     38885 589999999


Q ss_pred             HHhhhhcccCC------CCcccccccc
Q psy10852        363 LLAFYKVHYLD------TSPLIKPATK  383 (563)
Q Consensus       363 lv~~y~~~~~~------~~~l~~P~~~  383 (563)
                      ||+||+.+++.      .+.|..|+++
T Consensus        84 LI~~y~~~~~~~~~~~l~~~L~~Pv~r  110 (120)
T 2iug_A           84 LINHYRNESLAQYNPKLDVKLLYPVSK  110 (120)
T ss_dssp             HHHHHHHSCGGGTCGGGCCCCCEECCT
T ss_pred             HHHHHHhCccccccCCcceeeCCcCCc
Confidence            99999988763      3567788765

>2hdv_A SH2-B PH domain containing signaling mediator 1 gamma isoform; adapter protein, signaling protein; 2.00A {Mus musculus} PDB: 2hdx_A* 1rpy_A 1rqq_C*

Probab=99.60  E-value=3.1e-15  Score=125.56  Aligned_cols=88  Identities=25%  Similarity=0.453  Sum_probs=76.7

Q ss_pred             CCCCCccccccCHHHHHHHHhcC--CCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeCCcccCCh
Q psy10852        283 HDRNSWYFGMMTRQEAQAILLSE--KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDL  360 (563)
Q Consensus       283 ~~~~~w~~g~~sr~~A~~~l~~~--~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~~~~f~sl  360 (563)
                      ....+||||.|+|.+|+.+|...  ..+|+||||.|++.+|.|+||++.++.++|++|....++    .|.++...|+|+
T Consensus         6 l~~~~WyhG~isR~~Ae~lL~~~g~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g----~~~l~~~~F~sl   81 (111)
T 2hdv_A            6 LSGYPWFHGMLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGECVLTFNFQGKAKHLRLSLNAAG----QCRVQHLHFQSI   81 (111)
T ss_dssp             GGGSTTEEEECCHHHHHHHHHTTGGGGTTEEEEEECSSCTTEEEEEEEETTEEEEEEEEECTTC----CEEETTEEESSH
T ss_pred             cccCCCcCCCCCHHHHHHHHHHcCCCCCCeEEEEecCCCCCCEEEEEEeCCeEEEEEEEEcCCC----CEEeCCceeCCH
Confidence            34569999999999999999875  378999999999999999999999999999999986443    278888999999


Q ss_pred             hhHHhhhhcccCCC
Q psy10852        361 PSLLAFYKVHYLDT  374 (563)
Q Consensus       361 ~~lv~~y~~~~~~~  374 (563)
                      .+||+||+.+++..
T Consensus        82 ~~LV~~y~~~~l~~   95 (111)
T 2hdv_A           82 FDMLEHFRVHPIPL   95 (111)
T ss_dssp             HHHHHHHTTSCCC-
T ss_pred             HHHHHHHhhCCccc
Confidence            99999999877653

>2eo6_A B-cell linker protein; SH2, cytoplasmic adapter protein, B-cell adapter containing SH2 domain protein; NMR {Mus musculus}

Probab=99.60  E-value=2.5e-15  Score=131.69  Aligned_cols=90  Identities=23%  Similarity=0.370  Sum_probs=76.3

Q ss_pred             CCCCCCccccccCHHHHHHHHhcCCCCCcEEEEecCC--CCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeC-----C
Q psy10852        282 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNT--ILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-----D  354 (563)
Q Consensus       282 ~~~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~--~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~-----~  354 (563)
                      .+....||||.|+|.+|+++|.....+|+||||.|++  .++.|+|+++.++.++|++|....++  .. |.++     .
T Consensus        19 ~l~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~~~g~y~LSv~~~~~v~H~~I~~~~~g--~~-~~l~~~~~~~   95 (141)
T 2eo6_A           19 ELLGKPWYAGACDRKSAEEALHRSNKDGSFLIRKSSGHDSKQPYTLVAFFNKRVYNIPVRFIEAT--KQ-YALGKKKNGE   95 (141)
T ss_dssp             TTTTCSSEEESCCHHHHHHHHHHHCCTTCBCEEECSTTCSSCSEEEEEEETTEEEEEEECEETTT--TE-ECSSSCCTTC
T ss_pred             ccCCCCeEecCCCHHHHHHHhhccCCCceEEEEECCCCCCCCCEEEEEEECCEEEEEEEEEeCCC--CE-EEEccccCCC
Confidence            3456799999999999999997654689999999997  78999999999999999999875433  22 6776     5


Q ss_pred             cccCChhhHHhhhhcccCCC
Q psy10852        355 KTFSDLPSLLAFYKVHYLDT  374 (563)
Q Consensus       355 ~~f~sl~~lv~~y~~~~~~~  374 (563)
                      ..|+|+.+||+||+.+++..
T Consensus        96 ~~F~sl~eLV~~y~~~~~~l  115 (141)
T 2eo6_A           96 EYFGSVVEIVNSHQHNPLVL  115 (141)
T ss_dssp             CCBSSHHHHHHHHHHSCCCC
T ss_pred             CccCCHHHHHHHHhhCCccc
Confidence            89999999999999887653

>2dx0_A Phospholipase C, gamma 2; phosphoric diester hydrolase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Mus musculus}

Probab=99.59  E-value=5.4e-15  Score=129.04  Aligned_cols=102  Identities=25%  Similarity=0.445  Sum_probs=83.6

Q ss_pred             CCCCCCCcccccc-CHHHHHHHHhc-----CCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeC-
Q psy10852        281 DPHDRNSWYFGMM-TRQEAQAILLS-----EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-  353 (563)
Q Consensus       281 ~~~~~~~w~~g~~-sr~~A~~~l~~-----~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~-  353 (563)
                      +.+....||||.| +|.+|+++|..     ...+|+||||.|++.++.|+||++.++.|+||+|....++ +...|++. 
T Consensus        17 ~~~~~~~WyhG~i~sR~eAe~lL~~~c~~~g~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g-g~~~~~l~~   95 (138)
T 2dx0_A           17 ELHFGEKWFHKKVESRTSAEKLLQEYCAETGAKDGTFLVRESETFPNDYTLSFWRSGRVQHCRIRSTMEN-GVMKYYLTD   95 (138)
T ss_dssp             GTTSCCTTBCTTCCCHHHHHHHHHHHHTTTTCCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEEEEET-TEEEEESST
T ss_pred             ccccCCCcccCCCCCHHHHHHHHHhhccccCCCCCEEEEEeCCCCCCCeEEEEEECCeEEEEEEEEecCC-CceEEEeCC
Confidence            3456679999999 89999999985     3678999999999999999999999999999999986532 11126665 


Q ss_pred             CcccCChhhHHhhhhcccCC----CCcccccccc
Q psy10852        354 DKTFSDLPSLLAFYKVHYLD----TSPLIKPATK  383 (563)
Q Consensus       354 ~~~f~sl~~lv~~y~~~~~~----~~~l~~P~~~  383 (563)
                      ...|+|+.+||+||+.+++.    .+.|..|+++
T Consensus        96 ~~~F~sl~eLI~~y~~~~l~~~gl~~~L~~Pv~~  129 (138)
T 2dx0_A           96 NLTFNSIYALIQHYREAHLRCAEFELRLTDPVPN  129 (138)
T ss_dssp             TSCBSSHHHHHHHTTTSCCCCGGGSSCCCCBCC-
T ss_pred             CCcCCCHHHHHHHHhhCCCCCCCcccccCccCCC
Confidence            69999999999999998863    2567788765

>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=4.4e-15  Score=127.53  Aligned_cols=98  Identities=28%  Similarity=0.482  Sum_probs=81.5

Q ss_pred             CCCCCCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEe------CCeeEEEEEeeecCCCcceeEEeC-
Q psy10852        281 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKE------NNKVSHYIINKITNTEQQTCYKIG-  353 (563)
Q Consensus       281 ~~~~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~------~~~v~h~~I~~~~~~~~~~~~~i~-  353 (563)
                      +......||||.|+|.+|+.+|.....+|+||||.| +.++.|+||++.      ++.++||+|....++    .|++. 
T Consensus        11 ~~l~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S-~~~g~y~LSv~~~~~~~~~~~v~H~~I~~~~~g----~~~l~~   85 (125)
T 2dm0_A           11 TNLEIYEWYHRNITRNQAEHLLRQESKEGAFIVRDS-RHLGSYTISVFMGARRSTEAAIKHYQIKKNDSG----QWYVAE   85 (125)
T ss_dssp             CCCTTSSSBCCSCCHHHHHHHHHHHCSTTCBCEEEE-TTEEEEEEEEECCCSSSSSCCEEEEEEEECTTC----CEESSS
T ss_pred             cccccCCcccCCCCHHHHHHHHhhcCCCCEEEEEec-CCCCCEEEEEEeccccCCCCcEEEEEEEEcCCC----CEEECC
Confidence            345667999999999999999987556799999999 569999999998      458999999986543    27875 


Q ss_pred             CcccCChhhHHhhhhcccCCC-Ccccccccc
Q psy10852        354 DKTFSDLPSLLAFYKVHYLDT-SPLIKPATK  383 (563)
Q Consensus       354 ~~~f~sl~~lv~~y~~~~~~~-~~l~~P~~~  383 (563)
                      ...|+|+.+||+||+.+.... +.|..|+++
T Consensus        86 ~~~F~sl~eLV~~y~~~~~~l~~~L~~P~~~  116 (125)
T 2dm0_A           86 RHAFQSIPELIWYHQHNAAGLMTRLRYPVGL  116 (125)
T ss_dssp             SCCCSSHHHHHHHHTTCCCSSSCCCCSBCCS
T ss_pred             CCccCCHHHHHHHhhhCCCCCccCCCCccCC
Confidence            589999999999999887543 567888765

>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A

Probab=99.59  E-value=2.4e-15  Score=112.30  Aligned_cols=58  Identities=22%  Similarity=0.464  Sum_probs=53.4

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEec-CCcEEEEcCCCeEecc
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYS  442 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~-~g~~G~~P~~~v~~~~  442 (563)
                      ...++|+|+|.++.++||+|++||+|.|+++.++|||.|++. +|+.||||++||+++.
T Consensus         6 ~~~~~Alydy~a~~~~ELs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~G~~P~nyVe~l~   64 (65)
T 2lj0_A            6 LFSYQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKPLY   64 (65)
T ss_dssp             SCEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEETTSEEECC
T ss_pred             CEEEEEceeECCCCcCCcCCCCCCEEEEeEeCCCCEEEEEECCCCCEEEEehhHeEEEe
Confidence            347899999999999999999999999999999999999854 7999999999999873

>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP, hydrolase, signaling protein; 3.10A {Homo sapiens}

Probab=99.59  E-value=9.5e-16  Score=166.75  Aligned_cols=97  Identities=27%  Similarity=0.474  Sum_probs=81.2

Q ss_pred             CCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECC---------eEEEEEEEEecCCCcceEEEe
Q psy10852          7 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENN---------KVSHYIINKITNTEQQTCYKI   77 (563)
Q Consensus         7 ~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~---------~v~h~~I~~~~~~~~~~~~~~   77 (563)
                      ....++||||.|+|++||++|...+.+|+||||+|++.+|.|+|||++++         .|+||+|.....+     |.+
T Consensus       104 ~p~~~~Wy~g~~~r~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~~~~~~v~H~~I~~~~~~-----~~~  178 (595)
T 3ps5_A          104 DPTSERWYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKVMCEGGR-----YTV  178 (595)
T ss_dssp             CSCCSTTEEESCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEEEEESSSTTSCEEEEEEEEBCGGGC-----BBS
T ss_pred             cccccccccccCCHHHHHHHHhccCCCceEEEEecCCCCCcEEEEEEECCccccccCCCceEEEEEEEeCCE-----EEE
Confidence            44567899999999999999977566799999999988999999999987         8999999864332     777


Q ss_pred             CC-ceecChHhhHHhhhcccCC-----Cccccccccc
Q psy10852         78 GD-KTFSDLPSLLAFYKVHYLD-----TSPLIKPATK  108 (563)
Q Consensus        78 ~~-~~F~sl~~Li~~y~~~~~~-----~~~L~~p~~~  108 (563)
                      ++ ..|+||.+||+||+.+++.     .+.|..|+..
T Consensus       179 ~~~~~F~sl~~LV~~y~~~~l~~~~g~~~~L~~p~~~  215 (595)
T 3ps5_A          179 GGLETFDSLTDLVEHFKKTGIEEASGAFVYLRQPYYA  215 (595)
T ss_dssp             SSSCCBSSHHHHHHHHHHSCBCCTTSCCBCCCEECCC
T ss_pred             cCCcCCCCHHHHHHHHhcCCccccCCcEEEeeccccc
Confidence            65 7999999999999998763     3456677643

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A

Probab=99.57  E-value=5.1e-15  Score=114.08  Aligned_cols=61  Identities=38%  Similarity=0.621  Sum_probs=55.4

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNE  541 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~~  541 (563)
                      .+++|+++|.+.+++++||+|++||+|.|+++.++|||+|+++|++||||++||+.+....
T Consensus        10 ~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~~   70 (73)
T 2ebp_A           10 GRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDVLSSGP   70 (73)
T ss_dssp             EEEEECSCBCCCTTCCSBCCBCSSCEEEEEECCSSSCEEEECSSCEEEECSTTEEECCCCS
T ss_pred             eEEEEeeccCCCCCCCCccCCCCCCEEEEEEeCCCCeEEEEECCCEEEEeHHHEEECCCCC
Confidence            4789999999765578999999999999999999999999999999999999999997643

>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A

Probab=99.57  E-value=5e-15  Score=110.60  Aligned_cols=55  Identities=22%  Similarity=0.262  Sum_probs=50.1

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEe--CCeeeeecCCceEEcC
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIP  538 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~--~g~~G~~P~~~v~~~~  538 (563)
                      .++|+++|.  +.+++||+|++||+|.|+++.++|||.|++  +|++||||++||+.|.
T Consensus         8 ~~~Alydy~--a~~~~ELs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~G~~P~nyVe~l~   64 (65)
T 2lj0_A            8 SYQALYSYI--PQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKPLY   64 (65)
T ss_dssp             EEEESSCBC--CSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEETTSEEECC
T ss_pred             EEEEceeEC--CCCcCCcCCCCCCEEEEeEeCCCCEEEEEECCCCCEEEEehhHeEEEe
Confidence            589999999  555899999999999999999999999988  5899999999999873

>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}

Probab=99.57  E-value=2.4e-15  Score=110.08  Aligned_cols=56  Identities=23%  Similarity=0.566  Sum_probs=51.9

Q ss_pred             eeeeecccCCCCCCCC-CcCCCCCEEEEEEecCCCeeEEeeCCCeeeEEecCceeec
Q psy10852        111 EKVIAKYDFDGNDPDD-LPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY  166 (563)
Q Consensus       111 ~~~~a~~d~~~~~~~e-Ls~~~Gd~i~vl~~~~~~ww~g~~~~g~~G~fP~~yv~~~  166 (563)
                      .+++|+|||.++.++| |+|++||+|.|+++.+++||.|++.+|++|+||+|||+.+
T Consensus         4 ~~~rAlydy~~~~~~e~Ls~~~Gd~i~v~~~~~~~Ww~g~~~~G~~G~fP~nyVe~i   60 (60)
T 2lx7_A            4 ARCRTLYPFSGERHGQGLRFAAGELITLLQVPDGGWWEGEKEDGLRGWFPASYVQLL   60 (60)
T ss_dssp             CEEEESCCCCSCCCSSCCCCCTTCEEEBSCCCTTSCEEEECTTSCEEEECGGGEEEC
T ss_pred             CEEEECcccCCCCCCCCccCCCCCEEEEeEecCCCeEEEEeCCCCEEEEcHHHEEEC
Confidence            4689999999999887 9999999999999999999999977899999999999864

>2kno_A Tensin-like C1 domain-containing phosphatase; SH2 domain, TENC1, solution structure, cell junctio membrane, hydrolase, membrane, metal-binding; NMR {Homo sapiens} PDB: 2l6k_A

Probab=99.56  E-value=7.6e-15  Score=126.73  Aligned_cols=93  Identities=31%  Similarity=0.506  Sum_probs=79.1

Q ss_pred             CCCCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeC---------------CeeEEEEEeeecCCCcc
Q psy10852        283 HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKEN---------------NKVSHYIINKITNTEQQ  347 (563)
Q Consensus       283 ~~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~---------------~~v~h~~I~~~~~~~~~  347 (563)
                      .+...||+|.|+|++|+.+|.. ..+|+||||.|++.+|.|+||++..               +.|+||+|...+++   
T Consensus        17 ~~~~~Wyhg~isR~eAe~lL~~-~~~G~FLVR~S~s~~g~y~LSv~~~~~~~~~~~~~g~~~~~~v~H~~I~~~~~g---   92 (131)
T 2kno_A           17 DTSKFWYKPHLSRDQAIALLKD-KDPGAFLIRDSHSFQGAYGLALKVATPPPSAQPWKGDPVEQLVRHFLIETGPKG---   92 (131)
T ss_dssp             CCHHHHBCTTCCHHHHHHHHTT-SCTTBEEEEECSSSTTEEEEEEECSCCSSSSSSCCSCHHHHHEEEEEEECCSSC---
T ss_pred             cccCCceecCCCHHHHHHHhcC-CCCCeEEEecCCCCCCCEEEEEEeCCCCcccccccccccCCceEEEEEEECCCC---
Confidence            3456899999999999999976 4679999999999999999999986               37999999986554   


Q ss_pred             eeEEe----CCcccCChhhHHhhhhcccCCC-Ccccccc
Q psy10852        348 TCYKI----GDKTFSDLPSLLAFYKVHYLDT-SPLIKPA  381 (563)
Q Consensus       348 ~~~~i----~~~~f~sl~~lv~~y~~~~~~~-~~l~~P~  381 (563)
                        |.+    ....|+||.+||+||+.+++.. ++|..|+
T Consensus        93 --~~l~g~~~~~~F~SL~eLV~~y~~~~~~L~~~L~~P~  129 (131)
T 2kno_A           93 --VKIKGCPSEPYFGSLSALVSQHSISPISLPCCLRIPS  129 (131)
T ss_dssp             --CCEETCSSCCCCCSHHHHHHTTTTCCSSCSSCCBCSS
T ss_pred             --CEEecCCCCCccCCHHHHHHHHhhCCCCCCeECCCcC
Confidence              777    4589999999999999988765 5577775

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}

Probab=99.56  E-value=4.4e-15  Score=112.55  Aligned_cols=61  Identities=67%  Similarity=1.164  Sum_probs=54.9

Q ss_pred             ccceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCC
Q psy10852        480 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       480 ~~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~  540 (563)
                      +.+++|+++|.+++.+++||+|++||+|.|+++.++|||.|+++|++||||++||+.++..
T Consensus         6 ~~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~   66 (67)
T 2eyx_A            6 PIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQQ   66 (67)
T ss_dssp             SCBEEECCCBCCCTTCSSBCCBCSSEEEEEEEECTTSEEEEEETTEEEEEEGGGBCCBCSC
T ss_pred             CEEEEEeEEECCCCCCCCccccCCCCEEEEEEecCCCEEEEEECCCEEEEehHhEEEcCCC
Confidence            3479999999976557889999999999999999999999999999999999999988653

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A

Probab=99.56  E-value=3.7e-15  Score=112.97  Aligned_cols=62  Identities=63%  Similarity=1.066  Sum_probs=55.0

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET  542 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~~~  542 (563)
                      .+++|+++|.+++.+++||+|++||+|.|+.+.++|||.|+++|++||||++||+.+.....
T Consensus         2 ~~~~al~dy~~~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~~~~   63 (67)
T 2bzy_A            2 VFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQNP   63 (67)
T ss_dssp             EEEEECSCBCSEEECTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEECCSCC-
T ss_pred             cEEEEeeeECCCCCCCCccccCCCCEEEEEEecCCCeEEEEeCCcEEEEehHHeEECCCcCc
Confidence            47899999996533688999999999999999999999999999999999999999976543

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=1.2e-14  Score=116.52  Aligned_cols=63  Identities=63%  Similarity=1.089  Sum_probs=57.1

Q ss_pred             ccceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCCCC
Q psy10852        480 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET  542 (563)
Q Consensus       480 ~~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~~~  542 (563)
                      ..+++|+++|.+++++++||+|++||+|.|+.+.++|||+|+++|++||||++||+.+.....
T Consensus        16 ~~~~~alydy~~~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~~~~   78 (88)
T 2dbk_A           16 PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQNP   78 (88)
T ss_dssp             CEEEEECSCBCCCTTCSSBCCBCTTCEEEEEEECTTSCEEEECSSCEEEECTTTEEECCSSCC
T ss_pred             CEEEEEcccccCCCCCCCcccCCCCCEEEEEEecCCCEEEEEeCCCEEEEehHHeEECCCCCc
Confidence            457899999997766799999999999999999999999999999999999999999976544

>2el8_A Signal-transducing adaptor protein 2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics; NMR {Homo sapiens}

Probab=99.56  E-value=4.2e-15  Score=125.96  Aligned_cols=86  Identities=21%  Similarity=0.339  Sum_probs=74.9

Q ss_pred             CCCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEe----CCeeEEEEEeeecCCCcceeEEeC-Cccc-
Q psy10852        284 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKE----NNKVSHYIINKITNTEQQTCYKIG-DKTF-  357 (563)
Q Consensus       284 ~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~----~~~v~h~~I~~~~~~~~~~~~~i~-~~~f-  357 (563)
                      +..+||||.|+|.+|+.+|.....+|+||||.|++.+|.|+||++.    ++.|+||+|... ++    +|++. ...| 
T Consensus        19 ~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~v~H~~I~~~-~g----~~~i~~~~~F~   93 (118)
T 2el8_A           19 LETPSCFLKVSRLEAQLLLERYPECGNLLLRPSGDGADGVSVTTRQMHNGTHVVRHYKVKRE-GP----KYVIDVEQPFS   93 (118)
T ss_dssp             SSSCTTCCCCCHHHHHHHHHHSSTTCSBEEEECCSSSSSEEEEECCCBTTBCCCEEECBCCB-TT----BCCBSSSSCCC
T ss_pred             cCCCceecCCCHHHHHHHHhhCCCCcEEEEeeCCCCCCceEEEEEEecCCCCcEEEEEEEEc-CC----EEEEeCCCeEC
Confidence            3459999999999999999765578999999999999999999999    889999999883 22    27786 4789 


Q ss_pred             -CChhhHHhhhhcccCCC
Q psy10852        358 -SDLPSLLAFYKVHYLDT  374 (563)
Q Consensus       358 -~sl~~lv~~y~~~~~~~  374 (563)
                       +|+.+||+||+.+++..
T Consensus        94 ~~sL~eLV~~y~~~~~gl  111 (118)
T 2el8_A           94 CTSLDAVVNYFVSHTKKA  111 (118)
T ss_dssp             CSSHHHHHHHHHHHSSSC
T ss_pred             CCCHHHHHHHHhhCCCCC
Confidence             99999999999988765

>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2 protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2 d.93.1.1 d.93.1.1

Probab=99.55  E-value=9.8e-15  Score=156.74  Aligned_cols=95  Identities=29%  Similarity=0.589  Sum_probs=81.4

Q ss_pred             CCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECC----------eEEEEEEEEecCCCcceEEEeC
Q psy10852          9 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENN----------KVSHYIINKITNTEQQTCYKIG   78 (563)
Q Consensus         9 ~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~----------~v~h~~I~~~~~~~~~~~~~~~   78 (563)
                      +.++||||.|+|++||++|+....+|+||||+|++.+|.|+|||+.++          .|+||+|.... +    .|.++
T Consensus       108 ~~~~w~~g~~~r~~Ae~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~~~~~~~v~H~~I~~~~-g----~~~l~  182 (525)
T 2shp_A          108 TSERWFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVMIRCQE-L----KYDVG  182 (525)
T ss_dssp             TTCTTBCCSCCHHHHHHHHHHTCCTTEEEEEECSSSTTCEEEEEEECC-----CCCCCEEEEEEEEEET-T----EEESS
T ss_pred             ccceeecccCCHHHHHHHHhccCCCceEEEEecCCCCCCEEEEEEECCccccccccccceEEEEEEecC-C----eEEEC
Confidence            457899999999999999987545699999999998999999999987          89999999874 3    38886


Q ss_pred             -CceecChHhhHHhhhcccCC-----Cccccccccc
Q psy10852         79 -DKTFSDLPSLLAFYKVHYLD-----TSPLIKPATK  108 (563)
Q Consensus        79 -~~~F~sl~~Li~~y~~~~~~-----~~~L~~p~~~  108 (563)
                       ...|.||.+||+||+.+++.     .+.|..||.+
T Consensus       183 ~~~~F~sL~eLV~~y~~~~l~~~~g~~~~L~~P~~~  218 (525)
T 2shp_A          183 GGERFDSLTDLVEHYKKNPMVETLGTVLQLKQPLNT  218 (525)
T ss_dssp             SSCCBSSHHHHHHHHHHSCCBCTTSCBCCCCEECCC
T ss_pred             CCceeCcHHHHHHhhhccCccccCCeEEEeeccccc
Confidence             57999999999999998863     3567777765

>2bbu_A Suppressor of cytokine signaling 3; SH2 domain, extended SH2 subdomain, PEST motif, protein complex, cytokine regulator; HET: PTR; NMR {Mus musculus}

Probab=99.54  E-value=9.4e-15  Score=130.48  Aligned_cols=93  Identities=22%  Similarity=0.344  Sum_probs=80.1

Q ss_pred             CCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeCC--------cc
Q psy10852        285 RNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD--------KT  356 (563)
Q Consensus       285 ~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~~--------~~  356 (563)
                      ...||||.|+|.+|+.+|.. ..+|+||||+|++.++.|+||++.++.++|++|...+.     +|.+..        ..
T Consensus        22 ~~~WyhG~IsR~eAe~lL~~-~~~GtFLVR~S~s~~g~y~LSvr~~~~v~H~rI~~~~g-----~f~l~~~~~~~~~~~~   95 (164)
T 2bbu_A           22 ESGFYWSAVTGGEANLLLSA-EPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQCEGG-----SFSLQSDPRSTQPVPR   95 (164)
T ss_dssp             HTSCCCTTSCHHHHHHHHHH-SSTTCCEEEECSTTSCCEEEEECCTTCCEEEECEEETT-----EEESSSCCCCCSSCTT
T ss_pred             cCCccCCCCCHHHHHHHhcC-CCCCCEEEEECCCCCCCEEEEEEECCceEEEEEEeCCC-----eEEEecCcccccCCCc
Confidence            35899999999999999976 56799999999999999999999999999999997432     388864        69


Q ss_pred             cCChhhHHhhhhcccCCC---Ccccccccc
Q psy10852        357 FSDLPSLLAFYKVHYLDT---SPLIKPATK  383 (563)
Q Consensus       357 f~sl~~lv~~y~~~~~~~---~~l~~P~~~  383 (563)
                      |+|+.+||+||+.+++..   +++++|++.
T Consensus        96 F~SL~eLV~~Y~~~~~~~~~~~~l~ep~~~  125 (164)
T 2bbu_A           96 FDCVLKLVHHYMPPPGTPSFSLPPTEPSSE  125 (164)
T ss_dssp             CCHHHHHHHHHSCCCSCSCCSSSCSSCCSS
T ss_pred             cCCHHHHHHHHhhCCCCCCccccccCCCcc
Confidence            999999999999988753   567788764

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}

Probab=99.52  E-value=1.4e-14  Score=111.75  Aligned_cols=56  Identities=23%  Similarity=0.588  Sum_probs=51.6

Q ss_pred             eEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       387 ~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      +++|+|+|.+ .++||+|++||+|.|+.+.+++||.|+ .+|+.||||++||+++...
T Consensus         2 ~a~alydy~~-~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   57 (73)
T 2kxd_A            2 GAPPLPPYSA-GGREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKKLDSG   57 (73)
T ss_dssp             CCCCCCSSCC-CSCCCCBCTTCEEEEEECCSSSEEEEE-ETTEEEEEEGGGEEECCSS
T ss_pred             eEEEeeeeCC-CCCEeeEcCCCEEEEEEecCCCEEEEE-ECCCEEEEehHHeEEcCCC
Confidence            4789999998 899999999999999999999999998 7999999999999988553

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.52  E-value=1.2e-14  Score=119.14  Aligned_cols=90  Identities=23%  Similarity=0.361  Sum_probs=69.6

Q ss_pred             eeCCCeeeEEecCceeecccccccccccccccCCCCCCCCCCCCCccccccccccCccceeeeeccccCCCCCCceeecc
Q psy10852        149 QNISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEI  228 (563)
Q Consensus       149 ~~~~g~~G~fP~~yv~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~a~~~~eLsf~~  228 (563)
                      |+..|++||||.+||+.+........                           ...+...++++.|.+.+..++||+|++
T Consensus         3 r~~~g~~G~fP~~~v~~~~~~~~~~~---------------------------p~~~~~~~~~al~dy~~~~~~eLs~~~   55 (98)
T 1udl_A            3 SGSSGQKGWFPASHVKLLGPSSERAT---------------------------PAFHPVCQVIAMYDYAANNEDELSFSK   55 (98)
T ss_dssp             CCCSSCCSSCCCCCCCCCSCCCCCCC---------------------------SCCCCSEEEEESSCCCCSSTTSCCCCT
T ss_pred             CCCCCCEeEEEhhhEEEcCCcccccC---------------------------CCCCCceEEEECCCCCCCCCCccCCcC
Confidence            34678999999999997753211000                           001224455666666788899999999


Q ss_pred             CCEEEEeeecCCCceeeeeCCceeeccccceeecCCC
Q psy10852        229 GDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN  265 (563)
Q Consensus       229 Gd~v~V~~~~~~~W~~g~~~g~~G~~P~~~ve~~~~~  265 (563)
                      ||+|.|+++.+++||+|+++|+.|+||.+||+.+...
T Consensus        56 Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   92 (98)
T 1udl_A           56 GQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTDS   92 (98)
T ss_dssp             TCEEEECBCCSSSEEBCBSSSCBCCEETTSEEECCCC
T ss_pred             CCEEEEEEecCCCEEEEEECCcEEEEehHHeEEcCCC
Confidence            9999999999999999999999999999999998753

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}

Probab=99.51  E-value=2.3e-14  Score=105.21  Aligned_cols=55  Identities=33%  Similarity=0.503  Sum_probs=50.8

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcC
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP  538 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~  538 (563)
                      .++|+++|.  +.+++||+|++||+|.|+++.++|||.|+.+|+.||||++||+.++
T Consensus         3 ~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   57 (58)
T 2bz8_A            3 EAIVEFDYQ--AQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVREIK   57 (58)
T ss_dssp             CEEESSCBC--CCSTTBCCBCTTCEEEEEECCTTTEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEECcccC--CCCcCEeeECCCCEEEEEEeCCCCEEEEEECCeEEEEehHHeEEcC
Confidence            578999998  5558899999999999999989999999999999999999999885

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=99.51  E-value=1.6e-14  Score=152.44  Aligned_cols=82  Identities=22%  Similarity=0.474  Sum_probs=72.5

Q ss_pred             CCCCCCcc-----ccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeCCce
Q psy10852          7 PHDRNSWY-----FGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKT   81 (563)
Q Consensus         7 ~~~~~~w~-----~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~   81 (563)
                      .++.++||     ||.|+|++||++|..  .+|+||||+|++.+|.|+|||+.++.|+||+|.+ + |    .|++++..
T Consensus        42 ~~~~~~wy~~~w~hg~i~r~~ae~lL~~--~~G~FLvR~S~~~~g~~~Lsv~~~~~v~H~~I~~-~-g----~~~~~~~~  113 (463)
T 3cxl_A           42 EVENRPKYYGREFHGMISREAADQLLIV--AEGSYLIRESQRQPGTYTLALRFGSQTRNFRLYY-D-G----KHFVGEKR  113 (463)
T ss_dssp             CCTTCCTTCCTTBCCSCCHHHHHHHHTT--STTEEEEEECSSSTTCEEEEEECSSSEEEEECEE-S-S----SEESSSCC
T ss_pred             cccCCCCccccccccCCCHHHHHHHHcC--CCCeEEEeccCCCCCCEEEEEEECCEEEEEEEec-C-C----eEEECCCc
Confidence            46677787     999999999999964  3699999999998999999999999999999987 3 3    28888899


Q ss_pred             ecChHhhHH-----hhhccc
Q psy10852         82 FSDLPSLLA-----FYKVHY   96 (563)
Q Consensus        82 F~sl~~Li~-----~y~~~~   96 (563)
                      |.||.+||+     ||..+.
T Consensus       114 F~sl~~Lv~dGl~~~~~~~~  133 (463)
T 3cxl_A          114 FESIHDLVTDGLITLYIETK  133 (463)
T ss_dssp             BSCHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHhhhccCC
Confidence            999999999     998765

>2c9w_A Suppressor of cytokine signaling 2; growth regulation, SH2 domain, signal transduction inhibitor nuclear protein; 1.9A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1

Probab=99.51  E-value=6.3e-14  Score=126.74  Aligned_cols=83  Identities=27%  Similarity=0.450  Sum_probs=73.2

Q ss_pred             CCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeCC--------cc
Q psy10852        285 RNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD--------KT  356 (563)
Q Consensus       285 ~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~~--------~~  356 (563)
                      ...||||.|+|.+|+++|.. ..+|+||||+|++.++.|+||++.++.++|++|...+.     +|.+++        ..
T Consensus        16 ~~~WyhG~isR~eAe~lL~~-~~~G~FLVR~S~~~~~~~~LSv~~~~~v~H~rI~~~~g-----~~~l~~~~~~~~~~~~   89 (169)
T 2c9w_A           16 QTGWYWGSMTVNEAKEKLKE-APEGTFLIRDSSHSDYLLTISVKTSAGPTNLRIEYQDG-----KFRLDSIICVKSKLKQ   89 (169)
T ss_dssp             HTSCBCTTCCHHHHHHHHTT-SCTTCEEEEECCSTTCSEEEEEEETTEEEEEEEEEETT-----EEEECTTTTTGGGCCC
T ss_pred             cCCccccCCCHHHHHHHcCC-CCCcEEEEecCCCCCCeEEEEEEECCeeEEEEEEEeCC-----EEEEccccCccccCCC
Confidence            35899999999999999965 56799999999999999999999999999999998533     388875        78


Q ss_pred             cCChhhHHhhhhcccCC
Q psy10852        357 FSDLPSLLAFYKVHYLD  373 (563)
Q Consensus       357 f~sl~~lv~~y~~~~~~  373 (563)
                      |+|+.+||+||+.+++.
T Consensus        90 F~sl~eLI~~y~~~~~~  106 (169)
T 2c9w_A           90 FDSVVHLIDYYVQMCKD  106 (169)
T ss_dssp             BSCHHHHHHHHHHHTC-
T ss_pred             CCCHHHHHHHHHhCcCC
Confidence            99999999999988764

>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A*

Probab=99.51  E-value=8.4e-15  Score=157.50  Aligned_cols=95  Identities=27%  Similarity=0.469  Sum_probs=79.2

Q ss_pred             CCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECC---------eEEEEEEEEecCCCcceEEEeC-
Q psy10852          9 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENN---------KVSHYIINKITNTEQQTCYKIG-   78 (563)
Q Consensus         9 ~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~---------~v~h~~I~~~~~~~~~~~~~~~-   78 (563)
                      +.++||||.|+|++||.+|+....+|+||||+|++.+|.|+|||+.++         .|+||+|.....     .|.++ 
T Consensus       106 ~~~~w~~g~i~r~~Ae~lL~~~~~~G~FLVR~S~~~~g~y~Lsv~~~~~~~~~~~~~~v~h~~I~~~~g-----~~~l~~  180 (532)
T 2b3o_A          106 TSERWYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKVMCEGG-----RYTVGG  180 (532)
T ss_dssp             GGCTTBCTTCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEEEEEC----CCEEEEEEEEBCCTT-----SBBSSS
T ss_pred             ccccccccccchHHHHHHHhcCCCCceEEEecCCCCCCceEEEEEecCccccccCCCceEEEEEEEcCC-----ceeeCC
Confidence            456899999999999999986445699999999988999999999877         899999987632     27786 


Q ss_pred             CceecChHhhHHhhhcccCC-----Cccccccccc
Q psy10852         79 DKTFSDLPSLLAFYKVHYLD-----TSPLIKPATK  108 (563)
Q Consensus        79 ~~~F~sl~~Li~~y~~~~~~-----~~~L~~p~~~  108 (563)
                      ...|.||.+||+||+.+++.     .+.|..||.+
T Consensus       181 ~~~F~sl~eLV~~y~~~~l~~~~g~~~~L~~P~~~  215 (532)
T 2b3o_A          181 LETFDSLTDLVEHFKKTGIEEASGAFVYLRQPYYA  215 (532)
T ss_dssp             SCCBSSHHHHHHHHHHHCEECSSSCEECCCEECCC
T ss_pred             CcccCcHHHHHhhccccCccccCCeeEeccccccc
Confidence            57999999999999998652     2456677755

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.51  E-value=3.1e-14  Score=150.62  Aligned_cols=99  Identities=34%  Similarity=0.616  Sum_probs=81.8

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcCC-CCCCeEEEEecCCCCcceEEEEEE-----CCeEEEEEEEEecCCCcceEEEeC-
Q psy10852          6 DPHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKITNTEQQTCYKIG-   78 (563)
Q Consensus         6 ~~~~~~~w~~g~i~r~~ae~~L~~~-~~~G~FLvR~s~~~~~~~~lsv~~-----~~~v~h~~I~~~~~~~~~~~~~~~-   78 (563)
                      +.++.++||||.|+|++||++|+.. ..+|+||||.|++.+|.|+|||+.     ++.|+||+|.+..++    .|.+. 
T Consensus        60 ~~le~~~w~~g~~~r~~ae~~L~~~~~~~G~FLvR~s~~~~g~y~lsv~~~~~~~~~~v~h~~I~~~~~g----~~~~~~  135 (452)
T 1fmk_A           60 DSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSG----GFYITS  135 (452)
T ss_dssp             TSGGGSTTEEETCCHHHHHHHHTCTTSCTTEEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEEECTTS----CEESST
T ss_pred             ccccccccccCCccHHHHHHHhccCCCCCceEEEEeCCCCCCceEEEEEeeccCCCCcEEEEEEEEcCCC----CEEEec
Confidence            4567789999999999999999874 556999999999889999999997     678999999987654    26665 


Q ss_pred             CceecChHhhHHhhhcccCCC-ccccccccc
Q psy10852         79 DKTFSDLPSLLAFYKVHYLDT-SPLIKPATK  108 (563)
Q Consensus        79 ~~~F~sl~~Li~~y~~~~~~~-~~L~~p~~~  108 (563)
                      +..|.||.+||+||+.+..+. ..|..+|+.
T Consensus       136 ~~~F~Sl~~Li~~y~~~~~~l~~~l~~~~~~  166 (452)
T 1fmk_A          136 RTQFNSLQQLVAYYSKHADGLCHRLTTVCPT  166 (452)
T ss_dssp             TSEESSHHHHHHHHTTCCTTSSSCCCEECCC
T ss_pred             CcccCCHHHHHHHhhhccccchhhccccccc
Confidence            589999999999999876653 345566654

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}

Probab=99.51  E-value=2.6e-14  Score=107.30  Aligned_cols=59  Identities=34%  Similarity=0.427  Sum_probs=52.5

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCCCC
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET  542 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~~~  542 (563)
                      +++|+++|.  +++++||+|++||+|.|+++.++|||.|+.+|++||||++||+.+.....
T Consensus         3 ~~~alydy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~~~~   61 (65)
T 2nwm_A            3 AARLKFDFQ--AQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEVLPLEHH   61 (65)
T ss_dssp             EEEECSCBC--CCSTTBCCBCTTCEEEEEECCTTTCEEEEETTEEEEECGGGEEECCCC--
T ss_pred             EEEEeeeEC--CCCcCccCCcCCCEEEEEEecCCCEEEEEECCcEEEEehhhEEEcCCCCC
Confidence            588999998  55588999999999999999889999999999999999999999876544

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A

Probab=99.50  E-value=3.2e-14  Score=105.24  Aligned_cols=56  Identities=25%  Similarity=0.331  Sum_probs=51.2

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP  538 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~  538 (563)
                      ..++|+++|.  +++++||+|++||+|.|+++.++|||.|+.+|+.||||++||+.++
T Consensus         5 ~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~l~   60 (60)
T 1w70_A            5 MRAEALFDFT--GNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILK   60 (60)
T ss_dssp             CEEEESSCBC--CSSTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEECC
T ss_pred             cEEEECccCC--cCCCCCccCCCCCEEEEEEeCCCCeEEEEECCCEEEechHHEEECC
Confidence            3689999998  5558899999999999999999999999999999999999999874

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=7.3e-14  Score=109.20  Aligned_cols=58  Identities=33%  Similarity=0.345  Sum_probs=52.7

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~  540 (563)
                      .+++|+++|.  +.+++||+|++||+|.|+++.++|||.|+++|++||||++||+.+...
T Consensus        18 ~~~~al~dy~--~~~~~eLsf~~Gd~i~v~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~   75 (78)
T 2ed0_A           18 EKVVAIYDYT--KDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVESISGP   75 (78)
T ss_dssp             EEEEECSCBC--CSSTTBCCBCSSCEEEEEEECSSSEEEEEETTEEEEEETTSEEECSSS
T ss_pred             EEEEECccCC--ccCcCcccccCCCEEEEEEeCCCCEEEEEECCcEEEeChHHEEEcCCC
Confidence            4689999998  555889999999999999999999999999999999999999998653

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1

Probab=99.50  E-value=3.1e-14  Score=106.95  Aligned_cols=58  Identities=57%  Similarity=1.052  Sum_probs=53.7

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccC
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  443 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~  443 (563)
                      ..++|+|+|.++.++||+|++||+|.|+.+.+++||+|++.+|+.||||++||+++..
T Consensus         4 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~   61 (65)
T 1b07_A            4 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYHH   61 (65)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEECC-
T ss_pred             eEEEECCcCCCCCCCccCCcCCCEEEEEEecCCCeEEEEECCCCEEEEChHHEeecCC
Confidence            4799999999999999999999999999999999999987789999999999987754

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A

Probab=99.50  E-value=2.7e-14  Score=104.53  Aligned_cols=56  Identities=59%  Similarity=1.089  Sum_probs=51.9

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEec
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY  441 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~  441 (563)
                      ..++|+|+|.++.++||+|++||+|.|+.+.+++||.|++.+|+.||||++||+++
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   57 (57)
T 1cka_A            2 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY   57 (57)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEC-
T ss_pred             cEEEECCcCCCCCCCCCCCCCCCEEEEEEecCCCcEEEEeCCCCEEEEeHHHEEEC
Confidence            36899999999999999999999999999998999999878999999999999864

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.50  E-value=7.8e-15  Score=151.44  Aligned_cols=86  Identities=29%  Similarity=0.550  Sum_probs=62.6

Q ss_pred             CCCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeCCcee
Q psy10852          3 GTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTF   82 (563)
Q Consensus         3 ~~~~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F   82 (563)
                      +....++.++||||.|+|++||++|+.   +|+||||+|++.+ .|+|||+.++.|+||+|...++.     |.+++..|
T Consensus         5 ~~~~~l~~~~wyhg~i~r~~a~~lL~~---~G~flvR~s~~~~-~~~lsv~~~~~~~h~~i~~~~~~-----~~~~~~~F   75 (377)
T 3cbl_A            5 EVQKPLHEQLWYHGAIPRAEVAELLVH---SGDFLVRESQGKQ-EYVLSVLWDGLPRHFIIQSLDNL-----YRLEGEGF   75 (377)
T ss_dssp             GGGSCGGGCTTBCTTCCHHHHHHHCCS---TTEEEEEECC--C-CEEEEC-----CCEEEC----CC-----CCC----C
T ss_pred             ccccccccCCccCCCCCHHHHHHHHhc---CCCEEEEEeCCCC-cEEEEEEECCCccchhhccccce-----EEecceec
Confidence            344568889999999999999999974   7999999998866 99999999999999999986432     88888999


Q ss_pred             cChHhhHHhhhcccC
Q psy10852         83 SDLPSLLAFYKVHYL   97 (563)
Q Consensus        83 ~sl~~Li~~y~~~~~   97 (563)
                      +||.+||+||..++.
T Consensus        76 ~sl~~LI~~y~~~~~   90 (377)
T 3cbl_A           76 PSIPLLIDHLLSTQQ   90 (377)
T ss_dssp             CSHHHHHHHHHHHTC
T ss_pred             cchHHHHHHHhhccC
Confidence            999999999998754

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}

Probab=99.50  E-value=3.4e-14  Score=109.65  Aligned_cols=58  Identities=22%  Similarity=0.340  Sum_probs=52.8

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~  540 (563)
                      .+++|+++|.  +.+++||+|++||+|.|+++.++|||.|+++|+.||||++||+.+.+.
T Consensus        14 ~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   71 (73)
T 3c0c_A           14 PSCKALYDFE--PENDGELGFREGDLITLTNQIDENWYEGMLHGQSGFFPLSYVQVLVPL   71 (73)
T ss_dssp             CEEEESSCBC--CSSTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEEECC
T ss_pred             eEEEECccCC--CCCCCCccCcCCCEEEEEEecCCCEEEEEECCCEEEeChHHEEECCCC
Confidence            3789999999  555889999999999999999999999999999999999999998653

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=5.3e-14  Score=108.20  Aligned_cols=61  Identities=23%  Similarity=0.292  Sum_probs=54.5

Q ss_pred             ccceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCCCC
Q psy10852        480 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET  542 (563)
Q Consensus       480 ~~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~~~  542 (563)
                      +..++|+++|.  +.+++||+|++||+|.|+++.++|||.|+++|++||||++||+.+....+
T Consensus         9 ~~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~p   69 (72)
T 2dl8_A            9 PIEAIAKFDYV--GRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVVQDTSGP   69 (72)
T ss_dssp             CEEEEESSCBC--CSSSSBCCBCTTCEEEEEEEEETTEEEEEETTEEEEECSSSEEECCSSSC
T ss_pred             CEEEEECccCC--cCCCCEeccCCCCEEEEEeecCCCEEEEEECCEEEEEchHHeEEcCCCCC
Confidence            34789999998  55688999999999999999889999999999999999999999876544

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A

Probab=99.49  E-value=3.8e-14  Score=104.08  Aligned_cols=55  Identities=25%  Similarity=0.282  Sum_probs=50.4

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeC--CeeeeecCCceEEcC
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELN--GKTGHFPFTHVEFIP  538 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~--g~~G~~P~~~v~~~~  538 (563)
                      .++|+++|.  +.+++||+|++||+|.|+++.++|||.|+..  |+.||||++||+.++
T Consensus         2 ~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   58 (58)
T 1jo8_A            2 WATAEYDYD--AAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLGN   58 (58)
T ss_dssp             CEEESSCBC--CCSTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             EEEECceEC--CCCCCCcccCCCCEEEEEEecCCCcEEEEECCCCCEEEechHHeEECC
Confidence            578999999  5558899999999999999989999999998  999999999999874

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A

Probab=99.49  E-value=3.9e-14  Score=104.07  Aligned_cols=55  Identities=25%  Similarity=0.414  Sum_probs=50.6

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcC
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP  538 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~  538 (563)
                      +++|+++|.  +.+++||+|++||+|.|+++.++|||.|+.+|+.||||++||+.++
T Consensus         3 ~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   57 (58)
T 1uti_A            3 WARALYDFE--ALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPMM   57 (58)
T ss_dssp             EEEESSCBC--CCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEECccCC--CCCcCCCCCCCCCEEEEEEECCCCEEEEEECCeEEEeeHHHeEEcc
Confidence            588999999  4558899999999999999988999999999999999999999874

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A

Probab=99.49  E-value=4.2e-14  Score=105.38  Aligned_cols=57  Identities=33%  Similarity=0.430  Sum_probs=50.7

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEe-CCCCEEEEEeCCeeeeecCCceEEcCCC
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKT-NINGQWEGELNGKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~-~~~~w~~g~~~g~~G~~P~~~v~~~~~~  540 (563)
                      .++|+++|.  +.+++||+|++||+|.|+++ .++|||.|+.+|+.||||++||+.+++.
T Consensus         3 ~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   60 (62)
T 2j6f_A            3 DYIVEYDYD--AVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIKRE   60 (62)
T ss_dssp             CEEECSCBC--CSSTTBCCBCTTCEEEEEEECSSTTEEEEEETTEEEEEEGGGEEECC--
T ss_pred             EEEECccCC--cCCcCCcCCcCCCEEEEEEecCCCCEEEEEECCcEEEechHHEEECCCC
Confidence            478999998  55588999999999999999 7899999999999999999999998653

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens}

Probab=99.49  E-value=2.1e-14  Score=111.79  Aligned_cols=61  Identities=23%  Similarity=0.280  Sum_probs=54.6

Q ss_pred             ccccceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCC
Q psy10852        478 KLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       478 ~~~~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~  540 (563)
                      .....++|+++|.  +++++||+|++||+|.|+++.++|||.|+++|+.||||++||+.+...
T Consensus        16 ~~~~~~~Alydy~--a~~~~eLsf~~Gd~I~Vl~~~~~gWw~g~~~g~~G~fP~nyV~~~~~~   76 (79)
T 1z9q_A           16 MAAPRAEALFDFT--GNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKDF   76 (79)
T ss_dssp             SSCCCEEESSCCC--CSSTTBCCCCTTCCBCCCEESSSSEEEEEETTEEEEEEGGGEEESSCC
T ss_pred             CCceEEEEcCccC--CCCCCcccccCCCEEEEeEecCCCEEEEEECCeEEEecHHHEEECCCC
Confidence            3345789999999  555889999999999999999999999999999999999999998764

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A

Probab=99.49  E-value=4.9e-14  Score=107.10  Aligned_cols=60  Identities=33%  Similarity=0.601  Sum_probs=53.2

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeC--CCCEEEEEeCCeeeeecCCceEEcCCCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTN--INGQWEGELNGKTGHFPFTHVEFIPTNET  542 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~--~~~w~~g~~~g~~G~~P~~~v~~~~~~~~  542 (563)
                      .+++|+++|.  +.+++||+|++||+|.|+.+.  ++|||.|+++|++||||++||+.+.....
T Consensus         3 ~~~~Alydy~--a~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~g~~G~~P~~yV~~~~~~~~   64 (69)
T 2ydl_A            3 DYCKVIFPYE--AQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPLEH   64 (69)
T ss_dssp             EEEEESSCBC--CCSTTBCCBCTTCEEEEEESCCSSTTEEEEEETTEEEEEEGGGEEECCSCCC
T ss_pred             cEEEEcccCC--CCCCCccccCCCCEEEEEEcCCCCCCEEEEEECCcEEEecHHHEEECCCCcc
Confidence            3689999999  555889999999999999986  78999999999999999999999876543

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.49  E-value=4e-14  Score=151.46  Aligned_cols=99  Identities=28%  Similarity=0.472  Sum_probs=81.9

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEe-CCceec
Q psy10852          5 FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKI-GDKTFS   83 (563)
Q Consensus         5 ~~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~-~~~~F~   83 (563)
                      ++.++.++||||.|+|++||.+|+. ..+|+||||+|++.+|.|+|||+.++.|+||+|.+..++    .|.+ ....|.
T Consensus        99 ~~~le~~~wyhg~i~r~~ae~ll~~-~~~G~fLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~g----~~~~~~~~~F~  173 (495)
T 1opk_A           99 VNSLEKHSWYHGPVSRNAAEYLLSS-GINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDG----KLYVSSESRFN  173 (495)
T ss_dssp             SSSGGGSTTEEEECCHHHHHHHGGG-CCTTEEEEEECSSSTTCEEEEEEETTEEEEEECEECTTS----CEESSTTSCBS
T ss_pred             cccccchhhhccCCCHHHHHHHhhC-CCCceEEEEeCCCCCCceEEEEeeCCeEEEEEEEecCCC----ceEeccCccch
Confidence            4567788999999999999999976 456999999999889999999999999999999986544    2555 468999


Q ss_pred             ChHhhHHhhhcccCC-Cccccccccc
Q psy10852         84 DLPSLLAFYKVHYLD-TSPLIKPATK  108 (563)
Q Consensus        84 sl~~Li~~y~~~~~~-~~~L~~p~~~  108 (563)
                      ++.+||+||.....+ .+.|..|+++
T Consensus       174 sl~eLv~~~~~~~~g~~~~l~~~~~~  199 (495)
T 1opk_A          174 TLAELVHHHSTVADGLITTLHYPAPK  199 (495)
T ss_dssp             SHHHHHHHHTTCCTTSSSCCCEECCC
T ss_pred             hHHHHhhhhcccccccchhccccccc
Confidence            999999999887654 3345556654

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}

Probab=99.49  E-value=5.2e-14  Score=104.11  Aligned_cols=55  Identities=33%  Similarity=0.495  Sum_probs=50.6

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEc
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI  537 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~  537 (563)
                      ..++|+++|.  +++++||+|++||+|.|+++.++|||.|+.+|++||||++||+.|
T Consensus         6 ~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~l   60 (60)
T 2xmf_A            6 PQCKALYAYD--AQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTKI   60 (60)
T ss_dssp             CEEEESSCBC--CSSTTBCCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             cEEEECccCC--cCCcCCcCCCCCCEEEEEEecCCCEEEEEECCEEEEEcHHHEEEC
Confidence            3689999999  555889999999999999999999999999999999999999875

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.49  E-value=1.2e-13  Score=111.86  Aligned_cols=61  Identities=28%  Similarity=0.390  Sum_probs=54.2

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeC--CCCEEEEEeCCeeeeecCCceEEcCCCCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTN--INGQWEGELNGKTGHFPFTHVEFIPTNETS  543 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~--~~~w~~g~~~g~~G~~P~~~v~~~~~~~~~  543 (563)
                      .+++|+++|.  +++.+||+|++||+|.|+++.  ++|||+|+++|++||||++||+.+...+..
T Consensus         6 ~~~~Alydy~--a~~~~eLsf~~Gd~i~v~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~~   68 (93)
T 1uff_A            6 SGYRALYPFE--ARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSSENE   68 (93)
T ss_dssp             CCEEESSCBC--CCSSSCCCBCTTCEEEECSSCCCSSSEEEEEETTEEEEEETTTEEECCSSSSC
T ss_pred             EEEEECccCC--CCCCCCcCCCCCCEEEEeEccCCCCCEEEEEECCCEEEechHHeEEcCCcccc
Confidence            3689999999  556889999999999999986  789999999999999999999999776543

>2vif_A Suppressor of cytokine signalling 6; growth regulation, signal transduction inhibitor, KIT regula phosphotyrosine, signaling protein; HET: PTR; 1.45A {Homo sapiens}

Probab=99.49  E-value=6.1e-14  Score=122.89  Aligned_cols=82  Identities=24%  Similarity=0.336  Sum_probs=73.4

Q ss_pred             CCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeC----CcccCCh
Q psy10852        285 RNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG----DKTFSDL  360 (563)
Q Consensus       285 ~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~----~~~f~sl  360 (563)
                      ...||||.|+|.+|+.+|... .+|+||||.|++.++.|+|+++.++.++|++|...+.     +|.+.    ...|+|+
T Consensus        23 ~~~WyhG~isR~eAe~lL~~~-~~G~FLVR~S~~~~~~~~LSv~~~~~v~H~~I~~~~g-----~~~l~~~~~~~~F~sl   96 (141)
T 2vif_A           23 KQGWYWGPITRWEAEGKLANV-PDGSFLVRDSSDDRYLLSLSFRSHGKTLHTRIEHSNG-----RFSFYEQPDVEGHTSI   96 (141)
T ss_dssp             HHTCBCCSCCHHHHHHHTTTS-CTTCEEEEECSSTTCSEEEEEEETTEEEEEEEEEETT-----EEEETTCCSCCCBSSH
T ss_pred             cCCCcccCCCHHHHHHHhcCC-CCceEEEEecCCCCCCEEEEEEECCEEEEEEEEEECC-----EEEEeecCCCCccCCH
Confidence            348999999999999999764 5799999999999999999999999999999998732     38887    5899999


Q ss_pred             hhHHhhhhcccC
Q psy10852        361 PSLLAFYKVHYL  372 (563)
Q Consensus       361 ~~lv~~y~~~~~  372 (563)
                      .+||+||+.+.+
T Consensus        97 ~eLI~~y~~~~~  108 (141)
T 2vif_A           97 VDLIEHSIGDSE  108 (141)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHhhCCC
Confidence            999999998875

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}

Probab=99.49  E-value=5.5e-14  Score=106.58  Aligned_cols=58  Identities=28%  Similarity=0.358  Sum_probs=52.2

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~  540 (563)
                      .+++|+++|.  +.+++||+|++||+|.|+++.++|||.|+.+|++||||++||+.+...
T Consensus         4 ~~~~Alydy~--~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   61 (68)
T 2ew3_A            4 PCCRGLYDFE--PENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEVIVPL   61 (68)
T ss_dssp             CEEEESSCBC--CCSTTBCCBCTTCEEEEEEESSSSEEEEEETTEEEEEEGGGEEESCC-
T ss_pred             CEEEEeeeEC--CCCCCccCCCCCCEEEEEEecCCCEEEEEECCcEEEeeHHHEEEcCcc
Confidence            3689999999  555889999999999999999999999999999999999999988654

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.49  E-value=5.4e-14  Score=151.88  Aligned_cols=101  Identities=34%  Similarity=0.594  Sum_probs=80.8

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHcCC-CCCCeEEEEecCCCCcceEEEEEE-----CCeEEEEEEEEecCCCcceEEEeC
Q psy10852          5 FDPHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKITNTEQQTCYKIG   78 (563)
Q Consensus         5 ~~~~~~~~w~~g~i~r~~ae~~L~~~-~~~G~FLvR~s~~~~~~~~lsv~~-----~~~v~h~~I~~~~~~~~~~~~~~~   78 (563)
                      .+.++.++||||.|+|++||++|+.. ..+|+||||.|+..+|.|+|||+.     ++.|+||+|.+..++  . .|...
T Consensus       142 ~~~l~~~~wy~g~i~r~~ae~~L~~~~~~~G~FLvR~S~~~~g~y~lsv~~~~~~~~~~v~h~~I~~~~~g--~-~~i~~  218 (535)
T 2h8h_A          142 SDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSG--G-FYITS  218 (535)
T ss_dssp             TTSGGGSTTBCCSCCHHHHHHHHTCTTCCTTEEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEBC-CCS--C-EEEET
T ss_pred             cccccccceeccccCHHHHHHHhccCCCCCCeEEEEecCCCCCcEEEEEEeeccCCCCceEEEEEEEcCCC--c-EEeec
Confidence            35667789999999999999999873 556999999999889999999996     568999999986544  2 24446


Q ss_pred             CceecChHhhHHhhhcccCCC-ccccccccc
Q psy10852         79 DKTFSDLPSLLAFYKVHYLDT-SPLIKPATK  108 (563)
Q Consensus        79 ~~~F~sl~~Li~~y~~~~~~~-~~L~~p~~~  108 (563)
                      +..|.||.+||+||+.+..+. ..|..+|+.
T Consensus       219 ~~~F~SL~eLv~~y~~~~~~~~~~l~~~~~~  249 (535)
T 2h8h_A          219 RTQFNSLQQLVAYYSKHADGLCHRLTTVCPT  249 (535)
T ss_dssp             TEEESSHHHHHHHHHHCCTTSSSCCCEECCC
T ss_pred             cccccChHHhheeeccccCcccccccccccc
Confidence            689999999999999876653 345556543

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A

Probab=99.49  E-value=5.2e-14  Score=103.40  Aligned_cols=56  Identities=25%  Similarity=0.371  Sum_probs=51.0

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP  538 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~  538 (563)
                      .+++|+++|.  +.+++||+|++||+|.|+++.++|||.|+.+|+.||||++||+.++
T Consensus         3 ~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   58 (58)
T 1sem_A            3 KFVQALFDFN--PQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPYN   58 (58)
T ss_dssp             CEEEESSCBC--CSSTTBCCBCTTCEEEEEECSSSSEEEEEETTEEEEEEGGGEEECC
T ss_pred             eEEEECcCCC--CCCCCCcCCCCCCEEEEEEecCCCEEEEEECCcEEEechHHeEECC
Confidence            3689999999  4558899999999999999988999999999999999999999863

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}

Probab=99.49  E-value=3.8e-14  Score=104.09  Aligned_cols=55  Identities=25%  Similarity=0.678  Sum_probs=51.9

Q ss_pred             eEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEecc
Q psy10852        387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS  442 (563)
Q Consensus       387 ~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~  442 (563)
                      +++|+|+|.++.++||+|++||+|.|+.+.+++||.|+ .+|+.||||++||+++.
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~   57 (58)
T 2bz8_A            3 EAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQ-INGRRGLFPDNFVREIK   57 (58)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECCTTTEEEEE-ETTEEEEEEGGGEEECC
T ss_pred             EEEECcccCCCCcCEeeECCCCEEEEEEeCCCCEEEEE-ECCeEEEEehHHeEEcC
Confidence            68999999999999999999999999999999999998 49999999999999874

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus}

Probab=99.49  E-value=1.7e-14  Score=120.85  Aligned_cols=59  Identities=31%  Similarity=0.701  Sum_probs=54.1

Q ss_pred             cceeeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEee-CCCeeeEEecCceeecc
Q psy10852        109 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKYS  167 (563)
Q Consensus       109 ~~~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~-~~g~~G~fP~~yv~~~~  167 (563)
                      ....++|+|||.++.+++|+|++||+|.|+++.+++||.+++ .+|+.||||++||++++
T Consensus        26 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   85 (109)
T 2yt6_A           26 GVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPAD   85 (109)
T ss_dssp             SCCEEEESSCCCCSSTTSCCCCTTCEEEEEECSCTTCEEEEESSSCCEEEECTTTEEESS
T ss_pred             CCEEEEECccCCCCCCCccCCCCCCEEEEEEccCCCcEEEEECCCCCEEEechHHcEECC
Confidence            456799999999999999999999999999999999999997 68999999999998774

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*

Probab=99.48  E-value=5.7e-14  Score=104.68  Aligned_cols=57  Identities=26%  Similarity=0.461  Sum_probs=53.0

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEe-cCCcEEEEcCCCeEecc
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKYS  442 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~-~~g~~G~~P~~~v~~~~  442 (563)
                      ..++|+|+|.++.++||+|++||+|.|+.+.+++||.|++ .+|+.|+||++||+++.
T Consensus         4 ~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~fP~~yv~~~~   61 (62)
T 2fpe_A            4 QTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVT   61 (62)
T ss_dssp             CCEEECSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             CEEEECccCCccCcCcCcCCCCCEEEEEEecCCCEEEEEECCCCCEEEechHHEEECc
Confidence            3689999999999999999999999999999999999986 68999999999999864

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A

Probab=99.48  E-value=5.1e-14  Score=103.79  Aligned_cols=54  Identities=37%  Similarity=0.569  Sum_probs=50.1

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEc
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI  537 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~  537 (563)
                      +++|+++|.  +.+++||+|++||+|.|+++.++|||.|+.+|++||||++||+.|
T Consensus         6 ~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~l   59 (59)
T 2g6f_X            6 VVRAKFNFQ--QTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI   59 (59)
T ss_dssp             EEEESSCBC--CSSTTBCCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEECceeC--CCCcCCcCCCCCCEEEEEEecCCCEEEEEECCcEEEEeHHHEEEC
Confidence            689999998  555889999999999999999999999999999999999999875

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A

Probab=99.48  E-value=5.3e-14  Score=103.33  Aligned_cols=56  Identities=23%  Similarity=0.373  Sum_probs=51.1

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP  538 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~  538 (563)
                      .+++|+++|.  +.+++||+|++||+|.|+++.++|||.|+.+|+.||||++||+.++
T Consensus         3 ~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   58 (58)
T 2vwf_A            3 TYVQALFDFD--PQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTAVN   58 (58)
T ss_dssp             CEEEESSCBC--CCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECC
T ss_pred             eEEEECceEC--CCCcCCcCCCCCCEEEEEEcCCCCEEEEEECCcEEEEchHHeEECC
Confidence            4689999999  4558899999999999999988999999999999999999999864

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A

Probab=99.48  E-value=6.6e-14  Score=105.06  Aligned_cols=57  Identities=35%  Similarity=0.529  Sum_probs=52.2

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT  539 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~  539 (563)
                      .+++|+++|.  +.+++||+|++||+|.|+.+.++|||.|+.+|++||||++||+.+.+
T Consensus         7 ~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   63 (64)
T 2ak5_A            7 LVVRAKFNFQ--QTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREIKP   63 (64)
T ss_dssp             CEEEESSCBC--CCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEECCC
T ss_pred             EEEEEccccC--CcCcCcccCCCCCEEEEeEecCCCEEEEEECCCEEEEehHHeEEcCC
Confidence            3789999999  44588999999999999999899999999999999999999998865

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=7.8e-14  Score=105.95  Aligned_cols=58  Identities=24%  Similarity=0.198  Sum_probs=52.7

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~  540 (563)
                      .+++|+++|.  +++++||+|++||+|.|+++.++|||.|+.+|++||||++||+.++..
T Consensus         8 ~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (68)
T 2dmo_A            8 EAHRVLFGFV--PETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEPVSGP   65 (68)
T ss_dssp             EEEEECSSCC--CCSSSSCCCCTTCEEEECEECSSSCEEEEETTEEEEECSTTEEECCCS
T ss_pred             CEEEECcCCC--cCCcCCCCCCCCCEEEEEEeCCCCEEEEEeCCCEEEeehHHeEECCCC
Confidence            3789999999  455889999999999999999999999999999999999999998653

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A

Probab=99.48  E-value=6.2e-14  Score=104.45  Aligned_cols=56  Identities=32%  Similarity=0.605  Sum_probs=51.4

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEe-cCCcEEEEcCCCeEec
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKY  441 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~-~~g~~G~~P~~~v~~~  441 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+. ++||+|++ .+|+.||||++||+++
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~~~g~~G~~P~~yv~~~   62 (62)
T 2iim_A            6 DNLVIALHSYEPSHDGDLGFEKGEQLRILEQS-GEWWKAQSLTTGQEGFIPFNFVAKA   62 (62)
T ss_dssp             TCEEEESSCBCCCSTTBCCBCTTCEEEEEECC-SSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CcEEEEcccCCCCCCCCcCCCCCCEEEEEEcC-CCEEEEEECCCCCEEEEEHHHEEEC
Confidence            45799999999999999999999999999996 59999987 5899999999999864

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A

Probab=99.48  E-value=6.5e-14  Score=102.84  Aligned_cols=54  Identities=22%  Similarity=0.286  Sum_probs=50.0

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEc
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI  537 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~  537 (563)
                      +++|+++|.  +.+++||+|++||+|.|+++.++|||.|+.+|++||||++||+.+
T Consensus         4 ~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   57 (58)
T 1zx6_A            4 YVEALYQFD--PQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVKPA   57 (58)
T ss_dssp             EEEECSCBC--CCSTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEECceEC--CCCCCCccCCCCCEEEEEEecCCCEEEEEECCcEEEeeHHHEEEc
Confidence            689999999  555889999999999999998999999999999999999999875

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A

Probab=99.48  E-value=8.5e-14  Score=107.40  Aligned_cols=61  Identities=28%  Similarity=0.370  Sum_probs=54.6

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCCCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS  543 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~~~~  543 (563)
                      .+++|+++|.  +.+++||+|++||+|.|+++.++|||.|+++|++||||++||+.+......
T Consensus         8 ~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~~   68 (73)
T 2dbm_A            8 PCCRALYDFE--PENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEILVALPHS   68 (73)
T ss_dssp             CEEEESSCBC--CCSTTCCCBCTTCEEECCBCSSSSEEEEEETTEEEEEESSSEEESSCCSCC
T ss_pred             CEEEEccccC--CCCCCCccCCCCCEEEEEEecCCCEEEEEECCCEEEechHHEEEccCCCCC
Confidence            3789999999  555889999999999999998999999999999999999999999765443

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.48  E-value=5.3e-14  Score=104.83  Aligned_cols=57  Identities=32%  Similarity=0.666  Sum_probs=53.3

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEecc
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS  442 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~  442 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||.|+ .+|+.||||++||+++.
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~   61 (62)
T 1k4u_S            5 GSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGE-SKGKVGIFPKVFVEDSA   61 (62)
T ss_dssp             CEEEECCSCBCCCSSSBCCBCSSCEEEEEEESSSSCEEEE-CSSCEEEECGGGCCCSC
T ss_pred             CeEEEECCCCCcCCCCCccCCCCCEEEEEEeCCCCEEEEE-ECCcEEEEeHHHEEECC
Confidence            4589999999999999999999999999999999999998 79999999999998763

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}

Probab=99.48  E-value=5.8e-14  Score=105.38  Aligned_cols=58  Identities=24%  Similarity=0.569  Sum_probs=53.7

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ..++|+|+|.++.++||+|++||+|.|+.+.+++||.|+ .+|+.||||++||+.+...
T Consensus         2 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~fP~~yv~~~~~~   59 (65)
T 2nwm_A            2 KAARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGE-HHGRLGIFPANYVEVLPLE   59 (65)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEECCTTTCEEEE-ETTEEEEECGGGEEECCCC
T ss_pred             cEEEEeeeECCCCcCccCCcCCCEEEEEEecCCCEEEEE-ECCcEEEEehhhEEEcCCC
Confidence            368999999999999999999999999999899999998 7999999999999987643

>2hmh_A Suppressor of cytokine signaling 3; SOCS3, GP130, PTyr, peptide complex, cytokine regulator; HET: PTR; 2.00A {Mus musculus}

Probab=99.47  E-value=1e-13  Score=122.76  Aligned_cols=82  Identities=22%  Similarity=0.370  Sum_probs=71.8

Q ss_pred             CCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeCC--------cc
Q psy10852        285 RNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD--------KT  356 (563)
Q Consensus       285 ~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~~--------~~  356 (563)
                      ...||||.|+|.+|+++|.. ..+|+||||.|++.++.|+|+++.++.++|++|...+.     +|.+..        ..
T Consensus        33 ~~~WyhG~isR~eAe~lL~~-~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~rI~~~~g-----~f~l~~~~~~~~~~~~  106 (152)
T 2hmh_A           33 ESGFYWSAVTGGEANLLLSA-EPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQXEGG-----SFSLQSDPRSTQPVPR  106 (152)
T ss_dssp             HTSSEETTCCHHHHHHHHHT-SCTTEEEEEECCSTTCSEEEEEEETTEEEEEEEECGGG-----CBEECBCTTCSSCCCC
T ss_pred             cCCCcCCCCCHHHHHHHhcC-CCCCcEEEEeCCCCCCcEEEEEEcCCceEEEEEEecCC-----EEEEecccccccccCc
Confidence            35999999999999999976 46699999999999999999999999999999997322     277764        89


Q ss_pred             cCChhhHHhhhhcccC
Q psy10852        357 FSDLPSLLAFYKVHYL  372 (563)
Q Consensus       357 f~sl~~lv~~y~~~~~  372 (563)
                      |+|+.+||+||+.++.
T Consensus       107 F~SL~eLV~~Y~~~~~  122 (152)
T 2hmh_A          107 FDXVLKLVHHYMPPQA  122 (152)
T ss_dssp             BSSHHHHHHHTCCCCC
T ss_pred             cCCHHHHHHHHhhCcc
Confidence            9999999999998763

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A

Probab=99.47  E-value=5.9e-14  Score=103.79  Aligned_cols=55  Identities=27%  Similarity=0.626  Sum_probs=52.0

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEec
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY  441 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~  441 (563)
                      ..++|+|+|.++.++||+|++||+|.|+.+.+++||.|+ .+|+.||||++||+.+
T Consensus         5 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~-~~g~~G~~P~~yv~~l   59 (60)
T 1w70_A            5 MRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGT-VRGATGIFPLSFVKIL   59 (60)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEE-ETTEEEEEEGGGEEEC
T ss_pred             cEEEECccCCcCCCCCccCCCCCEEEEEEeCCCCeEEEE-ECCCEEEechHHEEEC
Confidence            479999999999999999999999999999999999998 6899999999999876

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A

Probab=99.47  E-value=7.2e-14  Score=104.87  Aligned_cols=56  Identities=30%  Similarity=0.519  Sum_probs=50.4

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeC--CCCEEEEEeCCeeeeecCCceEEcC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTN--INGQWEGELNGKTGHFPFTHVEFIP  538 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~--~~~w~~g~~~g~~G~~P~~~v~~~~  538 (563)
                      .+++|+++|.  +.+++||+|++||+|.|+++.  ++|||.|+++|++||||++||+.|+
T Consensus         7 ~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~l~   64 (64)
T 2jte_A            7 EYCRTLFPYT--GTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQIS   64 (64)
T ss_dssp             EEEEESSCBC--CSSSSBCCBCTTCEEEEEESCSSSTTEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEEECccCC--ccCCCccCCCCCCEEEEEECCCCCCCEEEEEECCeEEEEeHHHEEECc
Confidence            3689999998  556889999999999999985  6899999999999999999999873

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A

Probab=99.47  E-value=5.8e-14  Score=103.12  Aligned_cols=56  Identities=27%  Similarity=0.610  Sum_probs=52.2

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEecc
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS  442 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~  442 (563)
                      ..++|+|+|.++.++||+|++||+|.|+.+.+++||.|+. +|+.||||++||+++.
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~-~g~~G~~P~~yv~~~~   57 (58)
T 1uti_A            2 RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRL-HNKLGLFPANYVAPMM   57 (58)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEE-TTEEEEEEGGGEEECC
T ss_pred             eEEEECccCCCCCcCCCCCCCCCEEEEEEECCCCEEEEEE-CCeEEEeeHHHeEEcc
Confidence            3689999999999999999999999999998999999984 8999999999999764

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}

Probab=99.47  E-value=9.4e-14  Score=105.58  Aligned_cols=58  Identities=28%  Similarity=0.388  Sum_probs=52.6

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~  540 (563)
                      .+++|+++|.  +.+++||+|++||+|.|+++.+++||.|+++|++||||++||+.+...
T Consensus         8 ~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (68)
T 2djq_A            8 PRAKALCNYR--GKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEVISGP   65 (68)
T ss_dssp             CEEEECSCCC--SCCTTCCCCCTTCEEEEEECCCSSEEEEEETTEEEEEESSSEETTCSC
T ss_pred             eEEEECCCCC--CCCcCCccCCCCCEEEEEEecCCCEEEEEECCcEEEeehHHEEEcCCC
Confidence            3789999998  556889999999999999998999999999999999999999987653

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A

Probab=99.47  E-value=6.3e-14  Score=105.63  Aligned_cols=59  Identities=31%  Similarity=0.622  Sum_probs=52.0

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+. ++||.|++.+|+.||||++||+.+.+.
T Consensus         4 ~~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~-~~Ww~~~~~~g~~G~~Psnyv~~~~~~   62 (67)
T 2b86_A            4 EVIVIAKWDYTAQQDQELDIKKNERLWLLDDS-KTWWRVRNAANRTGYVPSNYVERKLEH   62 (67)
T ss_dssp             CEEEEESSCBCCSSTTSCCBCTTCEEEEEECS-SSSCEEECTTSCEEECCCCSEEEC---
T ss_pred             CeEEEEeeeECCCCCCccccCCCCEEEEEecC-CCeEEEEeCCCCEEEeChHHEeEcCCC
Confidence            35799999999999999999999999999984 799999977999999999999887653

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}

Probab=99.47  E-value=7.5e-14  Score=103.25  Aligned_cols=56  Identities=36%  Similarity=0.724  Sum_probs=52.1

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEec
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY  441 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~  441 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||.|+. +|+.||||++||+.+
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~-~g~~G~~P~~yv~~l   60 (60)
T 2xmf_A            5 SPQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRL-RGKQGLFPNNYVTKI   60 (60)
T ss_dssp             SCEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEE-TTEEEEEEGGGEEEC
T ss_pred             CcEEEECccCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEE-CCEEEEEcHHHEEEC
Confidence            34799999999999999999999999999999999999985 899999999999864

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A

Probab=99.47  E-value=6.6e-14  Score=102.80  Aligned_cols=55  Identities=31%  Similarity=0.536  Sum_probs=51.8

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEec
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY  441 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~  441 (563)
                      ..++|+|+|.++.++||+|++||+|.|+.+.+++||.|+ .+|+.|+||++||+++
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~   57 (58)
T 1zx6_A            3 EYVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGS-CNGRTGIFPANYVKPA   57 (58)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEE-ETTEEEEEEGGGEEEC
T ss_pred             eEEEECceECCCCCCCccCCCCCEEEEEEecCCCEEEEE-ECCcEEEeeHHHEEEc
Confidence            478999999999999999999999999999999999998 5999999999999875

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=1.1e-13  Score=110.82  Aligned_cols=62  Identities=26%  Similarity=0.270  Sum_probs=55.0

Q ss_pred             ccceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCCCCC
Q psy10852        480 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS  543 (563)
Q Consensus       480 ~~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~~~~  543 (563)
                      ..+++|+++|.  +.+++||+|++||+|.|+.+.++|||+|+++|++||||++||+.+...+.+
T Consensus        17 ~~~~~Alydy~--~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~~   78 (88)
T 1x2q_A           17 ARKVRALYDFE--AVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFVTTNLNIETE   78 (88)
T ss_dssp             CEEEEESSCCC--CCSSSCCCCCSSCEEEEEECSCSSSEEEEETTEEEEECGGGEESCSSCCSC
T ss_pred             CeEEEEcccCC--CCCcCccCCCCCCEEEEEEeCCCCEEEEEECCcEEEEehHHEEEcCCcCcc
Confidence            44789999998  555889999999999999998899999999999999999999988766543

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=6.3e-14  Score=108.99  Aligned_cols=62  Identities=21%  Similarity=0.339  Sum_probs=55.1

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCCCCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSV  544 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~~~~~  544 (563)
                      ..++|+++|.  +.+++||+|++||+|.|+++.+++||.|+++|++||||++||+.+...+...
T Consensus        11 ~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~~~   72 (76)
T 2epd_A           11 VEAVACFAYT--GRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITLPAGTEKQV   72 (76)
T ss_dssp             EEEEESSCEE--CSSTTBCEECTTCEEEEEEEEETTEEEEEETTEEEEEESSSEECCSSCSCCC
T ss_pred             EEEEECcCCC--CCCCCccCCCCCCEEEEEEeCCCCEEEEEECCcEEEEehHHEEEcCCCCCCC
Confidence            3689999998  5558899999999999999988999999999999999999999997765543

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A

Probab=99.47  E-value=1.4e-13  Score=105.91  Aligned_cols=59  Identities=31%  Similarity=0.500  Sum_probs=54.1

Q ss_pred             eeeEEEeecccCC--CCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGN--DPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~--~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ..+++|+|+|.+.  .++||+|++||+|.|+.+.+++||+|+ .+|+.||||++||+.+...
T Consensus         9 ~~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~-~~g~~G~fP~~yv~~~~~~   69 (73)
T 2ebp_A            9 CGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGL-LNNKVGTFKFIYVDVLSSG   69 (73)
T ss_dssp             SEEEEECSCBCCCTTCCSBCCBCSSCEEEEEECCSSSCEEEE-CSSCEEEECSTTEEECCCC
T ss_pred             ceEEEEeeccCCCCCCCCccCCCCCCEEEEEEeCCCCeEEEE-ECCCEEEEeHHHEEECCCC
Confidence            4589999999976  899999999999999999999999997 7999999999999988654

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=1e-13  Score=105.31  Aligned_cols=58  Identities=21%  Similarity=0.371  Sum_probs=52.6

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~  540 (563)
                      .+++|+++|.  +.+++||+|++||+|.|+++.+++||.|+++|++||||++||+.+...
T Consensus         8 ~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (68)
T 2dl4_A            8 NTYVALYKFV--PQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQRLSGP   65 (68)
T ss_dssp             CEEEESSCCC--CSSTTBCCCCTTCEEEEEECCCSSEEEEECSSCEEEEETTTEEECCCC
T ss_pred             CEEEEeeeEC--CCCcCCcCCCCCCEEEEEEeCCCCEEEEEECCcEEEEehHHeEECCCC
Confidence            3689999998  455889999999999999998999999999999999999999998653

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A

Probab=99.47  E-value=1e-13  Score=104.40  Aligned_cols=56  Identities=25%  Similarity=0.304  Sum_probs=51.2

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP  538 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~  538 (563)
                      ..++|+++|.  +++++||+|++||+|.|+++.++|||.|+.+|+.||||++||+.++
T Consensus        10 ~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   65 (65)
T 3ulr_B           10 ITAIALYDYQ--AAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQ   65 (65)
T ss_dssp             SCEEECSCBC--CCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECC
T ss_pred             eEEEEEeeEC--CCCcCEeeEecCCEEEEEEecCCCEEEEEECCcEEEEehHHeEECC
Confidence            3689999998  5558899999999999999989999999999999999999999874

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}

Probab=99.47  E-value=3.7e-14  Score=106.43  Aligned_cols=58  Identities=21%  Similarity=0.529  Sum_probs=53.5

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      .+++|+|+|.++.++||+|++||+|.|+.+.+++||.|+ .+|+.|+||++||+.+...
T Consensus         2 ~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~-~~g~~G~fP~~yv~~~~~~   59 (65)
T 2fei_A            2 RQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGT-LNNKLGLFPSNFVKELELE   59 (65)
T ss_dssp             CEEECSSCCCCCSTTBCCCCTTCEEECCCCSSSSEEEEE-SSSCEEEEETTTSCBCCCC
T ss_pred             eEEEECccCCcCCcCccCCCCCCEEEEEEecCCCEEEEE-ECCcEEEecHHHEEEcCCC
Confidence            368999999999999999999999999999899999998 7999999999999887543

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=1.1e-13  Score=105.05  Aligned_cols=59  Identities=22%  Similarity=0.424  Sum_probs=54.7

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ..+++|+|+|.++.++||+|++||+|.|+.+.+++||.|+ .+|+.|+||++||+++...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   65 (68)
T 2dmo_A            7 GEAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVM-FNGQKGLVPCNYLEPVSGP   65 (68)
T ss_dssp             SEEEEECSSCCCCSSSSCCCCTTCEEEECEECSSSCEEEE-ETTEEEEECSTTEEECCCS
T ss_pred             CCEEEECcCCCcCCcCCCCCCCCCEEEEEEeCCCCEEEEE-eCCCEEEeehHHeEECCCC
Confidence            4589999999999999999999999999999999999996 7999999999999988653

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}

Probab=99.47  E-value=7.6e-14  Score=105.79  Aligned_cols=58  Identities=29%  Similarity=0.586  Sum_probs=53.6

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ..++|+|+|.++.++||+|++||+|.|+.+.+++||.|+ .+|+.||||++||+.+...
T Consensus         4 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   61 (68)
T 2ew3_A            4 PCCRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGM-IHGESGFFPINYVEVIVPL   61 (68)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEESSSSEEEEE-ETTEEEEEEGGGEEESCC-
T ss_pred             CEEEEeeeECCCCCCccCCCCCCEEEEEEecCCCEEEEE-ECCcEEEeeHHHEEEcCcc
Confidence            479999999999999999999999999999999999998 5999999999999988654

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}

Probab=99.47  E-value=1e-13  Score=108.85  Aligned_cols=60  Identities=35%  Similarity=0.589  Sum_probs=55.2

Q ss_pred             ceeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCC-cEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        384 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH-WWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       384 ~~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~-W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ...+++|+|+|.++.++||+|++||+|.|+.+.+++ ||+|+ .+|+.||||++||+.+...
T Consensus         9 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~-~~g~~G~fP~~yv~~~~~~   69 (80)
T 2i0n_A            9 FAKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQ-LNGKEGSFPVDHVEILLSD   69 (80)
T ss_dssp             CCCEEEESSCBCCCSSSSCCBCSSEEEEEEEESSSSSEEEEE-ETTEEEEEEGGGEEEESSC
T ss_pred             CCeEEEECCCCCcCCCCCcCCCCCCEEEEEEecCCCCEEEEE-ECCcEEEechHHEEECCCC
Confidence            456899999999999999999999999999998877 99998 7999999999999988664

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A

Probab=99.47  E-value=7.5e-14  Score=102.88  Aligned_cols=56  Identities=32%  Similarity=0.662  Sum_probs=52.1

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEec
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY  441 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~  441 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||.|+ .+|+.||||++||+++
T Consensus         4 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~l   59 (59)
T 2g6f_X            4 GSVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGT-HNGRTGWFPSNYVREI   59 (59)
T ss_dssp             CCEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEE-ETTEEEEEEGGGEEEC
T ss_pred             CcEEEECceeCCCCcCCcCCCCCCEEEEEEecCCCEEEEE-ECCcEEEEeHHHEEEC
Confidence            3479999999999999999999999999999999999998 5999999999999864

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A

Probab=99.47  E-value=6.9e-14  Score=102.69  Aligned_cols=55  Identities=29%  Similarity=0.602  Sum_probs=51.1

Q ss_pred             eEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEec-CCcEEEEcCCCeEec
Q psy10852        387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKY  441 (563)
Q Consensus       387 ~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~-~g~~G~~P~~~v~~~  441 (563)
                      +++|+|+|.++.++||+|++||+|.|+.+.+++||.|+.. +|+.|+||++||+.+
T Consensus         2 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   57 (58)
T 1jo8_A            2 WATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLG   57 (58)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             EEEECceECCCCCCCcccCCCCEEEEEEecCCCcEEEEECCCCCEEEechHHeEEC
Confidence            4899999999999999999999999999999999999854 499999999999876

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A

Probab=99.47  E-value=6.9e-14  Score=104.18  Aligned_cols=57  Identities=28%  Similarity=0.595  Sum_probs=52.1

Q ss_pred             eEEEeecccCCCCCCCCCCCCCEEEEEEe-cCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        387 KVIAKYDFDGNDPDDLPFKKNDILIVVSK-DEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       387 ~~~a~~~y~~~~~~el~~~~g~~v~v~~~-~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      +++|+|+|.++.++||+|++||+|.|+.+ .+++||.|+ .+|+.||||++||+++...
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   60 (62)
T 2j6f_A            3 DYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGE-LNGRRGMFPDNFVKEIKRE   60 (62)
T ss_dssp             CEEECSCBCCSSTTBCCBCTTCEEEEEEECSSTTEEEEE-ETTEEEEEEGGGEEECC--
T ss_pred             EEEECccCCcCCcCCcCCcCCCEEEEEEecCCCCEEEEE-ECCcEEEechHHEEECCCC
Confidence            58999999999999999999999999999 788999998 6999999999999988653

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}

Probab=99.47  E-value=1e-13  Score=108.86  Aligned_cols=59  Identities=32%  Similarity=0.516  Sum_probs=53.0

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCC-EEEEEeCCeeeeecCCceEEcCCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNING-QWEGELNGKTGHFPFTHVEFIPTNE  541 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~-w~~g~~~g~~G~~P~~~v~~~~~~~  541 (563)
                      .+++|+++|.  +++.+||+|++||+|.|+++.+++ ||.|+++|++||||++||+.+....
T Consensus        11 ~~~~alydy~--~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~~   70 (80)
T 2i0n_A           11 KYARALKDYN--VSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVEILLSDV   70 (80)
T ss_dssp             CEEEESSCBC--CCSSSSCCBCSSEEEEEEEESSSSSEEEEEETTEEEEEEGGGEEEESSCC
T ss_pred             eEEEECCCCC--cCCCCCcCCCCCCEEEEEEecCCCCEEEEEECCcEEEechHHEEECCCCC
Confidence            4789999999  556899999999999999998877 9999999999999999999987654

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=1.2e-13  Score=104.99  Aligned_cols=59  Identities=27%  Similarity=0.629  Sum_probs=54.7

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||.|+ .+|+.||||++||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   65 (68)
T 2dl4_A            7 GNTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGK-IQDRIGFFPANFVQRLSGP   65 (68)
T ss_dssp             CCEEEESSCCCCSSTTBCCCCTTCEEEEEECCCSSEEEEE-CSSCEEEEETTTEEECCCC
T ss_pred             CCEEEEeeeECCCCcCCcCCCCCCEEEEEEeCCCCEEEEE-ECCcEEEEehHHeEECCCC
Confidence            4579999999999999999999999999999899999998 7999999999999988654

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A

Probab=99.46  E-value=8.9e-14  Score=102.12  Aligned_cols=55  Identities=35%  Similarity=0.439  Sum_probs=50.4

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEc
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI  537 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~  537 (563)
                      ..++|+++|.  +.+++||+|++||+|.|+.+.++|||.|+.+|++||||++||+.|
T Consensus         4 ~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~l   58 (58)
T 2drm_A            4 IQVKALYDYD--AQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQDI   58 (58)
T ss_dssp             EEEEESSCBC--CCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             cEEEECccCC--CCCcCCcCCCCCCEEEEEEecCCCEEEEEECCcEEEEeHHHEEEC
Confidence            3689999999  555889999999999999998899999999999999999999875

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}

Probab=99.46  E-value=2.5e-14  Score=107.33  Aligned_cols=57  Identities=30%  Similarity=0.522  Sum_probs=51.6

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCC
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~  540 (563)
                      +++|+++|.  +++++||+|++||+|.|+++.++|||.|+++|+.||||++||+.+...
T Consensus         3 ~~~Alydy~--~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~   59 (65)
T 2fei_A            3 QCKVLFEYI--PQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELELE   59 (65)
T ss_dssp             EEECSSCCC--CCSTTBCCCCTTCEEECCCCSSSSEEEEESSSCEEEEETTTSCBCCCC
T ss_pred             EEEECccCC--cCCcCccCCCCCCEEEEEEecCCCEEEEEECCcEEEecHHHEEEcCCC
Confidence            578999998  555889999999999999998999999999999999999999887544

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}

Probab=99.46  E-value=6.7e-14  Score=105.96  Aligned_cols=57  Identities=16%  Similarity=0.228  Sum_probs=52.6

Q ss_pred             eeEEEeecccCC--CCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccC
Q psy10852        386 EKVIAKYDFDGN--DPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  443 (563)
Q Consensus       386 ~~~~a~~~y~~~--~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~  443 (563)
                      .+++|+|+|.++  .++||+|++||+|.|+.+.+++||.|+ .+|+.||||++||+.+..
T Consensus         7 ~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~-~~g~~G~fP~~yv~~~~~   65 (67)
T 2eyx_A            7 IYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGE-CNGKRGHFPFTHVRLLDQ   65 (67)
T ss_dssp             CBEEECCCBCCCTTCSSBCCBCSSEEEEEEEECTTSEEEEE-ETTEEEEEEGGGBCCBCS
T ss_pred             EEEEEeEEECCCCCCCCccccCCCCEEEEEEecCCCEEEEE-ECCCEEEEehHhEEEcCC
Confidence            479999999999  889999999999999999999999997 699999999999987753

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}

Probab=99.46  E-value=1.3e-13  Score=106.06  Aligned_cols=59  Identities=24%  Similarity=0.539  Sum_probs=54.5

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEec-CCcEEEEcCCCeEeccCC
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~-~g~~G~~P~~~v~~~~~~  444 (563)
                      .+++|+|+|.++.++||+|++||+|.|+.+.++|||.|++. +|+.||||++||+.+...
T Consensus         6 ~~~~Alydy~a~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~G~~P~~yv~~~~~~   65 (73)
T 2lcs_A            6 QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQPE   65 (73)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEEEETTTEEEEECTTSSCEEEEESTTEEECCSS
T ss_pred             CEEEECccCCCCCCCccCCcCCCEEEEEEEcCCCEEEEEECCCCCEEEeeHHHEEECCCC
Confidence            57999999999999999999999999999999999999865 489999999999988665

>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A

Probab=99.46  E-value=4.5e-15  Score=149.55  Aligned_cols=79  Identities=30%  Similarity=0.509  Sum_probs=0.0

Q ss_pred             CCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeCC-cee
Q psy10852          4 TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD-KTF   82 (563)
Q Consensus         4 ~~~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~-~~F   82 (563)
                      .++.++.++||||.|+|++||.+|... .+|+||||+| +.+|.|+|||+.++.|+||+|.+..+|    +|+++. ..|
T Consensus       294 ~~~~~~~~~WyhG~isR~~AE~LL~~~-~~G~FLVR~S-s~~g~y~LSv~~~~~v~H~~I~~~~~g----~~~~~~~~~F  367 (373)
T 3hhm_B          294 DLPHHDEKTWNVGSSNRNKAENLLRGK-RDGTFLVRES-SKQGCYACSVVVDGEVKHCVINKTATG----YGFAEPYNLY  367 (373)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccCCCCcCCCCCHHHHHHHhccC-CCCcEEEEec-CCCCCEEEEEEECCeEEEEEEEEcCCC----cEEeCCCCCC
Confidence            456788899999999999999999765 5699999999 779999999999999999999987655    366665 899


Q ss_pred             cChHhh
Q psy10852         83 SDLPSL   88 (563)
Q Consensus        83 ~sl~~L   88 (563)
                      +||.+|
T Consensus       368 ~SL~eL  373 (373)
T 3hhm_B          368 SSLKEL  373 (373)
T ss_dssp             ------
T ss_pred             CChhhC
Confidence            999987

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...

Probab=99.46  E-value=9.4e-14  Score=103.55  Aligned_cols=56  Identities=20%  Similarity=0.325  Sum_probs=51.3

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP  538 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~  538 (563)
                      ..++|+++|.  +.+++||+|++||+|.|+++.+++||.|+.+|+.||||++||+.++
T Consensus         7 ~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~g~~G~~P~~yv~~~d   62 (62)
T 3ngp_A            7 ELVLVLYDYQ--EKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKKLD   62 (62)
T ss_dssp             CEEEECSCBC--CCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEEECcCCC--CCCCCCccCCCCCEEEEeEecCCCeEEEEECCEEEEEEHHHEEECC
Confidence            4789999998  5558899999999999999989999999999999999999999874

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.46  E-value=1.9e-13  Score=107.48  Aligned_cols=61  Identities=33%  Similarity=0.579  Sum_probs=54.0

Q ss_pred             ccceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeC-----CeeeeecCCceEEcCCCCC
Q psy10852        480 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELN-----GKTGHFPFTHVEFIPTNET  542 (563)
Q Consensus       480 ~~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~-----g~~G~~P~~~v~~~~~~~~  542 (563)
                      +.+++|+++|.  +++++||+|++||+|.|+++.++|||.|++.     |++||||++||+.+.....
T Consensus         7 ~~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~~~~G~fP~~yv~~~~~~~~   72 (80)
T 1ue9_A            7 GEIAQVTSAYV--ASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGPSSE   72 (80)
T ss_dssp             CEEEEECSCCC--CCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEECCSCCS
T ss_pred             CeEEEECcccC--CCCCCCCCCCCCCEEEEEEecCCCcEEEEECCCCCCCcEEEEchHHeEECCCCCC
Confidence            45799999998  5568999999999999999989999999997     4999999999999976544

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.46  E-value=3.9e-14  Score=105.56  Aligned_cols=56  Identities=30%  Similarity=0.278  Sum_probs=51.1

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP  538 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~  538 (563)
                      .+++|+++|.  +.+++||+|++||+|.|+++.++|||.|+.+|+.||||++||+.++
T Consensus         6 ~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   61 (62)
T 1k4u_S            6 SQVEALFSYE--ATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDSA   61 (62)
T ss_dssp             EEEECCSCBC--CCSSSBCCBCSSCEEEEEEESSSSCEEEECSSCEEEECGGGCCCSC
T ss_pred             eEEEECCCCC--cCCCCCccCCCCCEEEEEEeCCCCEEEEEECCcEEEEeHHHEEECC
Confidence            3689999998  5558899999999999999989999999999999999999998764

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A

Probab=99.46  E-value=9.1e-14  Score=105.62  Aligned_cols=58  Identities=22%  Similarity=0.602  Sum_probs=53.4

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEec--CCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~--~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ..++|+|+|.++.++||+|++||+|.|+.+.  +++||.|+ .+|+.||||++||+.+...
T Consensus         3 ~~~~Alydy~a~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~-~~g~~G~~P~~yV~~~~~~   62 (69)
T 2ydl_A            3 DYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGE-LNGRRGVFPDNFVKLLPPL   62 (69)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEESCCSSTTEEEEE-ETTEEEEEEGGGEEECCSC
T ss_pred             cEEEEcccCCCCCCCccccCCCCEEEEEEcCCCCCCEEEEE-ECCcEEEecHHHEEECCCC
Confidence            5799999999999999999999999999986  78999998 6999999999999988654

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=2.3e-13  Score=106.66  Aligned_cols=58  Identities=24%  Similarity=0.307  Sum_probs=52.9

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~  540 (563)
                      .+++|+++|.  +.+++||+|++||+|.|+.+.++|||.|+++|++||||++||+.+...
T Consensus        18 ~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   75 (79)
T 1x69_A           18 ITAVALYDYQ--AAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQSG   75 (79)
T ss_dssp             CCEEESSCCC--CSSSSBCCCCTTCEEEEEEECSSSEEEEEETTEEEEEETTSEEECCCC
T ss_pred             eEEEECccCC--CCCCCCcCcCCCCEEEEeEecCCCeEEEEECCcEEEechHHEEECCCC
Confidence            4689999998  555889999999999999998999999999999999999999998754

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A

Probab=99.46  E-value=8.9e-14  Score=102.12  Aligned_cols=55  Identities=29%  Similarity=0.681  Sum_probs=52.0

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEec
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY  441 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~  441 (563)
                      ..++|+|+|.++.++||+|++||+|.|+.+.+++||.|+. +|+.||||++||+++
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~-~g~~G~~P~~yv~~~   57 (58)
T 2vwf_A            3 TYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGAC-HGQTGMFPRNYVTAV   57 (58)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEE-TTEEEEEEGGGEEEC
T ss_pred             eEEEECceECCCCcCCcCCCCCCEEEEEEcCCCCEEEEEE-CCcEEEEchHHeEEC
Confidence            4789999999999999999999999999998899999985 999999999999876

>2cr4_A 3BP-2, SH3 domain-binding protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=3e-14  Score=121.55  Aligned_cols=107  Identities=19%  Similarity=0.203  Sum_probs=80.6

Q ss_pred             cCCCceeeeeCCceeeccccceeecCCCCCCCCCCCCCccCCCCCCCCCCccccccCHHHHHHHHhcCC-CCCcEEEEec
Q psy10852        238 NINGQWEGELNGKTGHFPFTHVEFIPTNETMPFHSSMKMTGTFDPHDRNSWYFGMMTRQEAQAILLSEK-DNGAFLVRDS  316 (563)
Q Consensus       238 ~~~~W~~g~~~g~~G~~P~~~ve~~~~~~~~p~~~~~~~~~~~~~~~~~~w~~g~~sr~~A~~~l~~~~-~~G~FlvR~S  316 (563)
                      .+++||..      +++|+|||....                  .++.++|||         .++..+. .+|+||||+|
T Consensus         6 ~~~~~~~~------~~iPsnyv~~~~------------------~l~~~~Wyh---------~Ll~~g~~~dG~FLVR~S   52 (126)
T 2cr4_A            6 SGEDYEKV------PLPNSVFVNTTE------------------SCEVERLFK---------ATSPRGEPQDGLYCIRNS   52 (126)
T ss_dssp             CCCCCCSC------SSCTTTBCSCCC------------------HHHHHHHHH---------HHSTTSCCCTTCEEEEEC
T ss_pred             CCCCeEEc------CCCCHhhcCccc------------------ccccCCCHH---------HHhhCCCCCCCeEEEEec
Confidence            34567755      679999996532                  123348999         2222333 3599999999


Q ss_pred             CCCCcceEEEEEeC--CeeEEEEEeeecCCCcceeEEeC-CcccCChhhHHhhhhcccCCC---Ccccccccc
Q psy10852        317 NTILGNYVLCVKEN--NKVSHYIINKITNTEQQTCYKIG-DKTFSDLPSLLAFYKVHYLDT---SPLIKPATK  383 (563)
Q Consensus       317 ~~~~g~~~ls~~~~--~~v~h~~I~~~~~~~~~~~~~i~-~~~f~sl~~lv~~y~~~~~~~---~~l~~P~~~  383 (563)
                      + .+|.|+||++.+  +.|+||+|...++.     |++. ...|+|+.+||+||+.+++..   ..|+.|++.
T Consensus        53 ~-~~g~y~LSv~~~~~~~vkH~rI~~~~~~-----~~i~~~~~F~sL~eLV~hY~~~~l~~~~~~~L~~P~~~  119 (126)
T 2cr4_A           53 S-TKSGKVLVVWDETSNKVRNYRIFEKDSK-----FYLEGEVLFVSVGSMVEHYHTHVLPSHQSLLLRHPYGY  119 (126)
T ss_dssp             S-STTCEEEEEEETTTTEECCEECEEETTE-----EESSSSCEESSHHHHHHHHTTSCCSSSSSCCCCSBSSC
T ss_pred             C-CCCCEEEEEEeCCCCCEEEEEEEECCCe-----EEEcCCccCCCHHHHHHHHhhCCcCCCCCEEeCCcCCC
Confidence            9 899999999999  99999999986542     8886 479999999999999988753   446666643

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.46  E-value=8.1e-14  Score=105.56  Aligned_cols=56  Identities=36%  Similarity=0.739  Sum_probs=53.0

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEec
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY  441 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~  441 (563)
                      ..++|+|+|.++.++||+|++||+|.|+.+.+++||.|++.+|+.||||++||+++
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   58 (67)
T 1gl5_A            3 EIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGK   58 (67)
T ss_dssp             SCEEECSCBCCSSSSBCCBCTTCEEEEEECSSSSEEEEECSSSCEEEEETTSEESS
T ss_pred             eEEEECccCCCCCCCeecCCcCCEEEEEEccCCCcEEEEECCCCEEEEEhHhEEEc
Confidence            46899999999999999999999999999998999999877999999999999987

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A

Probab=99.46  E-value=9.8e-14  Score=102.65  Aligned_cols=54  Identities=30%  Similarity=0.489  Sum_probs=49.5

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEeC--CCCEEEEEeCCeeeeecCCceEEc
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTN--INGQWEGELNGKTGHFPFTHVEFI  537 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~--~~~w~~g~~~g~~G~~P~~~v~~~  537 (563)
                      .++|+++|.  +.+++||+|++||+|.|+++.  ++|||.|+.+|++||||++||+.|
T Consensus         5 ~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~l   60 (60)
T 1oot_A            5 KAVALYSFA--GEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV   60 (60)
T ss_dssp             EEEESSCBC--CCSTTBCCBCTTCEEEEEECCSCTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEECccCC--cCCcCEeeEcCCCEEEEEEeCCCCCCeEEEEECCEEEEEeHHHEEEC
Confidence            689999999  455889999999999999987  689999999999999999999875

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A

Probab=99.46  E-value=1.1e-13  Score=101.70  Aligned_cols=56  Identities=39%  Similarity=0.719  Sum_probs=52.0

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEec
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY  441 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~  441 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||.|+. +|+.||||++||+++
T Consensus         3 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~-~g~~G~~P~~yv~~l   58 (58)
T 2drm_A            3 GIQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGEL-NGKRGWVPANYVQDI   58 (58)
T ss_dssp             CEEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEE-TTEEEEEEGGGEEEC
T ss_pred             CcEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCEEEEEE-CCcEEEEeHHHEEEC
Confidence            35799999999999999999999999999999899999985 999999999999864

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=2.1e-13  Score=107.07  Aligned_cols=59  Identities=10%  Similarity=0.112  Sum_probs=53.7

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNE  541 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~~  541 (563)
                      ..++|+++|.  +..++||+|++||+|.|+++.++|||.|+++|++||||++||+.+....
T Consensus         9 ~~~~al~dy~--~~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~   67 (80)
T 2ekh_A            9 TSYMTCSAYQ--KVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLVLDENEQ   67 (80)
T ss_dssp             EEEEECSCBC--CSSTTSCCBCTTCEEEEEEECTTSEEEEEETTEEEEEETTTEECCCCCC
T ss_pred             CEEEECCCCC--CCCCCccCcCCCCEEEEEEeCCCCeEEEEECCCEEEEEhHHeEECCCCC
Confidence            3689999998  5568999999999999999999999999999999999999999987654

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A

Probab=99.45  E-value=9.6e-14  Score=101.95  Aligned_cols=55  Identities=33%  Similarity=0.752  Sum_probs=51.8

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEec
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY  441 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~  441 (563)
                      ..++|+|+|.++.++||+|++||+|.|+.+.+++||.|+. +|+.||||++||+++
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~-~g~~G~~P~~yv~~~   57 (58)
T 1sem_A            3 KFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQL-NNRRGIFPSNYVCPY   57 (58)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEE-TTEEEEEEGGGEEEC
T ss_pred             eEEEECcCCCCCCCCCcCCCCCCEEEEEEecCCCEEEEEE-CCcEEEechHHeEEC
Confidence            4789999999999999999999999999999999999985 899999999999876

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.45  E-value=1.1e-13  Score=106.14  Aligned_cols=58  Identities=43%  Similarity=0.787  Sum_probs=52.3

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEE-ecCCCcEEEEecCCcEEEEcCCCeEecc
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVS-KDEEHWWTAQNISGEVGSIPVPYVQKYS  442 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~-~~~~~W~~~~~~~g~~G~~P~~~v~~~~  442 (563)
                      ...++|+|+|.++.++||+|++||+|.|+. ..+++||.|++.+|+.||||++||++..
T Consensus        11 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   69 (71)
T 1csk_A           11 GTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKRE   69 (71)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSTTEEEEECTTSCEEEEETTSEEC--
T ss_pred             CCEEEEceeECcCCCCcCCCCCCCEEEEeECCCCCCCEEEEeCCCCEEEEehHHeEEcc
Confidence            457999999999999999999999999999 6788999998779999999999998754

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A

Probab=99.45  E-value=1.3e-13  Score=105.88  Aligned_cols=60  Identities=32%  Similarity=0.712  Sum_probs=55.2

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEe--cCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSK--DEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~--~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ...++|+|+|.+..++||+|++||+|.|+.+  .+++||.|++.+|+.||||++||+.+...
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~   67 (71)
T 1u5s_A            6 LHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDG   67 (71)
T ss_dssp             SSEEEESSCCCCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEETTTEEEEEETTSEEECCCS
T ss_pred             cEEEEEcccCCCCCCCcccCCCCCEEEEEECCCCCCCCEEEEeCCCCEEEEeHHHEEECCCC
Confidence            4579999999999999999999999999999  67899999878999999999999988654

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A

Probab=99.45  E-value=1.1e-13  Score=104.74  Aligned_cols=58  Identities=19%  Similarity=0.246  Sum_probs=53.7

Q ss_pred             eeEEEeecccCC--CCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        386 EKVIAKYDFDGN--DPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       386 ~~~~a~~~y~~~--~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      .+++|+|+|.++  .++||+|++||+|.|+.+.+++||.|+ .+|+.|+||++||+.+...
T Consensus         2 ~~~~al~dy~~~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~fP~~yv~~~~~~   61 (67)
T 2bzy_A            2 VFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGE-VNGRKGLFPFTHVKIFDPQ   61 (67)
T ss_dssp             EEEEECSCBCSEEECTTBCCBCTTCEEEEEEECSSSEEEEE-ETTEEEEEEGGGEEECCSC
T ss_pred             cEEEEeeeECCCCCCCCccccCCCCEEEEEEecCCCeEEEE-eCCcEEEEehHHeEECCCc
Confidence            368999999998  999999999999999999999999997 7999999999999988654

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A

Probab=99.45  E-value=1.2e-13  Score=103.73  Aligned_cols=56  Identities=25%  Similarity=0.681  Sum_probs=52.0

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEec--CCCcEEEEecCCcEEEEcCCCeEec
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVPYVQKY  441 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~--~~~W~~~~~~~g~~G~~P~~~v~~~  441 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.  +++||.|+ .+|+.||||++||+.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~-~~g~~G~~P~~yv~~l   63 (64)
T 2jte_A            6 KEYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGE-LNGKEGVFPDNFAVQI   63 (64)
T ss_dssp             SEEEEESSCBCCSSSSBCCBCTTCEEEEEESCSSSTTEEEEE-ETTEEEEEEGGGEEEC
T ss_pred             CEEEEECccCCccCCCccCCCCCCEEEEEECCCCCCCEEEEE-ECCeEEEEeHHHEEEC
Confidence            56899999999999999999999999999986  68999998 6999999999999876

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=1.3e-13  Score=104.83  Aligned_cols=58  Identities=24%  Similarity=0.225  Sum_probs=52.4

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~  540 (563)
                      ..++|+++|.  +.+++||+|++||+|.|+++.+++||.|+++|++||||++||+.+...
T Consensus         8 ~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (68)
T 1x2p_A            8 EEFVAIADYA--ATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVGKHSGP   65 (68)
T ss_dssp             CEEEESSCCC--CSSTTBCCCCTTCEEEEEECCSSSEEEEECTTCCEEEESSSEECCCCS
T ss_pred             CEEEECceEC--CCCcCCcCCCCCCEEEEEEcCCCCEEEEEECCeEEEEehHHeEECCCC
Confidence            3689999998  556889999999999999998999999999999999999999987543

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.45  E-value=2.2e-13  Score=106.54  Aligned_cols=60  Identities=28%  Similarity=0.377  Sum_probs=54.0

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET  542 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~~~  542 (563)
                      ..++|+++|.  +.+++||+|++||+|.|+++.+++||.|+++|++||||++||+.+.....
T Consensus         8 ~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~   67 (78)
T 2yuo_A            8 RRAKALLDFE--RHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLDERSK   67 (78)
T ss_dssp             EEEEESSCBC--CSSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEECCCCS
T ss_pred             eEEEECccCC--CCCCCCccCCCCCEEEEEEecCCCEEEEEECCCEEEEehHHEEECCCcCC
Confidence            4689999998  55588999999999999999999999999999999999999999976543

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}

Probab=99.45  E-value=1.1e-13  Score=105.17  Aligned_cols=58  Identities=40%  Similarity=0.759  Sum_probs=54.2

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEecc
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS  442 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~  442 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||.|++.+|+.||||++||+++.
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   67 (68)
T 1s1n_A           10 GEEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLEPYS   67 (68)
T ss_dssp             CEEEEECSCBCCSSSSCCCBCSSEEEEECSCCSSSEEEEECSSSCEEEEESTTEEECC
T ss_pred             CCEEEEcccCCCCCCCcCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEehHHeEECc
Confidence            4579999999999999999999999999999889999998779999999999999874

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=2.7e-13  Score=106.51  Aligned_cols=59  Identities=15%  Similarity=0.304  Sum_probs=54.6

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ...|+|+|+|.++.++||+|++||+|.|+.+.+++||+|+ .+|+.||||++||+++...
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~~   66 (80)
T 2ekh_A            8 ATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVR-FGELEGWAPSHYLVLDENE   66 (80)
T ss_dssp             CEEEEECSCBCCSSTTSCCBCTTCEEEEEEECTTSEEEEE-ETTEEEEEETTTEECCCCC
T ss_pred             CCEEEECCCCCCCCCCccCcCCCCEEEEEEeCCCCeEEEE-ECCCEEEEEhHHeEECCCC
Confidence            4579999999999999999999999999999999999998 6899999999999988654

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}

Probab=99.45  E-value=7.8e-14  Score=103.14  Aligned_cols=54  Identities=24%  Similarity=0.338  Sum_probs=49.4

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEE
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEF  536 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~  536 (563)
                      .+++|+++|.  +.+++||+|++||+|.|+++.++|||.|+.+|++||||++||++
T Consensus         7 ~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~   60 (60)
T 2gnc_A            7 EFAIAKFDYV--GRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIVV   60 (60)
T ss_dssp             EEEEESSCBC--CSSTTBCCBCTTCEEEEEEEEETTEEEEEETTEEEEEEGGGEEC
T ss_pred             EEEEECCCCC--cCCcCCcCCCCCCEEEEEEecCCCEEEEEECCeEEEEeHhhEEC
Confidence            4789999998  55588999999999999999889999999999999999999974

>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}

Probab=99.45  E-value=1.3e-13  Score=106.20  Aligned_cols=58  Identities=31%  Similarity=0.551  Sum_probs=51.9

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~  540 (563)
                      .+++|+++|.  +++++||+|++||+|.|+++.++|||.|+++|++||||++||+.+++.
T Consensus        14 ~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   71 (72)
T 4glm_A           14 TYGVALYRFQ--ALEPNELDFEVGDKIRILATLEDGWLEGSLKGRTGIFPYRFVKLCPAA   71 (72)
T ss_dssp             CEEEESSCBC--CCSTTBCCBCTTCEEEEEEECSTTEEEEEETTEEEEEEGGGEEEEC--
T ss_pred             eEEEECccCC--CCCCCcCCCCCCCEEEEEEccCCCEEEEEECCcEEEEChHHeEECCCC
Confidence            4689999998  555889999999999999999999999999999999999999998753

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=1.7e-13  Score=108.06  Aligned_cols=61  Identities=25%  Similarity=0.400  Sum_probs=54.4

Q ss_pred             ccceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCCCC
Q psy10852        480 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET  542 (563)
Q Consensus       480 ~~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~~~  542 (563)
                      ..+++|+++|.  +++++||+|++||+|.|+++.++|||.|+++|++||||++||+.+.....
T Consensus        10 ~~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~   70 (81)
T 2ysq_A           10 IVSAEAVWDHV--TMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQED   70 (81)
T ss_dssp             CEEEEESSCCC--CSSSSSCCCCTTCEEEEEECCSSSEEEEECSSCEEEEEGGGEEESSCCCC
T ss_pred             ceEEEEeeeEC--CCCCCcCCCCCCCEEEEEEEcCcCEEEEEECCCEEEechHHEEEcCCccc
Confidence            34689999998  55688999999999999999899999999999999999999999976543

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.45  E-value=2.3e-13  Score=107.28  Aligned_cols=59  Identities=25%  Similarity=0.244  Sum_probs=52.7

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEe--CCCCEEEEEeCCeeeeecCCceEEcCCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKT--NINGQWEGELNGKTGHFPFTHVEFIPTNE  541 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~--~~~~w~~g~~~g~~G~~P~~~v~~~~~~~  541 (563)
                      ..++|+++|.  +++++||+|++||+|.|+++  .++|||.|+.+|++||||++||+.+....
T Consensus        18 ~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   78 (81)
T 1x43_A           18 RKARVLYDYD--AANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLELLNSGP   78 (81)
T ss_dssp             EEEEESSCCC--CSSTTBCCCCTTCEEEEECCTTCCTTEEEEEETTEEEEEEGGGEEECCCCC
T ss_pred             eEEEEcccCC--CCCCCcCCCCCCCEEEEEEcCCCCCCcEEEEECCCEEEEehHHEEECCCCC
Confidence            4689999998  55688999999999999998  46899999999999999999999997653

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}

Probab=99.45  E-value=1.7e-13  Score=104.13  Aligned_cols=59  Identities=27%  Similarity=0.571  Sum_probs=54.5

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||.|+ .+|+.||||++||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   65 (68)
T 2djq_A            7 GPRAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGE-INGVSGIFPASSVEVISGP   65 (68)
T ss_dssp             CCEEEECSCCCSCCTTCCCCCTTCEEEEEECCCSSEEEEE-ETTEEEEEESSSEETTCSC
T ss_pred             ceEEEECCCCCCCCcCCccCCCCCEEEEEEecCCCEEEEE-ECCcEEEeehHHEEEcCCC
Confidence            4579999999999999999999999999999899999998 7999999999999987653

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A

Probab=99.45  E-value=1.7e-13  Score=101.68  Aligned_cols=56  Identities=23%  Similarity=0.305  Sum_probs=50.9

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeee-eecCCceEEcCC
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTG-HFPFTHVEFIPT  539 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G-~~P~~~v~~~~~  539 (563)
                      +++|+++|.  +.+++||+|++||+|.|+++.++|||.|+.+|+.| |||++||+.+++
T Consensus         5 ~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~gG~~P~~yv~~~~~   61 (61)
T 1y0m_A            5 AVKALFDYK--AQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEMIN   61 (61)
T ss_dssp             CEEESSCBC--CCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEEGGGEEECCC
T ss_pred             EEEECcCCC--cCCCCCcCCcCCCEEEEEEecCCCEEEEEECCeEEEEEChHHcEECCC
Confidence            689999998  55588999999999999999899999999999887 999999998863

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A

Probab=99.45  E-value=1.5e-13  Score=103.41  Aligned_cols=57  Identities=28%  Similarity=0.427  Sum_probs=52.8

Q ss_pred             eeEEEeecccC-CCCCCCCCCCCCEEEEEEecCCCcEEEEe-cCCcEEEEcCCCeEecc
Q psy10852        386 EKVIAKYDFDG-NDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKYS  442 (563)
Q Consensus       386 ~~~~a~~~y~~-~~~~el~~~~g~~v~v~~~~~~~W~~~~~-~~g~~G~~P~~~v~~~~  442 (563)
                      .+++|+|+|.+ +.++||+|++||+|.|+.+.+++||.|++ .+|+.||||++||+++.
T Consensus         6 ~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~~   64 (65)
T 2j05_A            6 RRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVG   64 (65)
T ss_dssp             CEEEESSCBCCCTTSSBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             cEEEEccccCCCCCCCcCcCCCCCEEEEeEecCCCEEEEEECCCCCEEEEEhHHeEECc
Confidence            47999999999 99999999999999999999999999985 58999999999999864

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}

Probab=99.45  E-value=1.1e-13  Score=105.55  Aligned_cols=56  Identities=25%  Similarity=0.456  Sum_probs=51.3

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEeC---CCCEEEEEeCCeeeeecCCceEEcCC
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTN---INGQWEGELNGKTGHFPFTHVEFIPT  539 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~---~~~w~~g~~~g~~G~~P~~~v~~~~~  539 (563)
                      +++|+++|.  +++++||+|++||+|.|+++.   ++|||.|+++|++||||++||+.+..
T Consensus         5 ~~~alydy~--~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   63 (69)
T 1wyx_A            5 LAKALYDNV--AESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKILVG   63 (69)
T ss_dssp             EEEESSCBC--CSSTTBCCBCTTCEEEEEETTGGGCTTEEEEEETTEEEEEEGGGEEEEEE
T ss_pred             EEEECccCC--cCCCCccCCcCCCEEEEeECCCCCCCCcEEEEECCcEEEechhhEEECCC
Confidence            688999998  556889999999999999988   79999999999999999999998854

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}

Probab=99.45  E-value=1.4e-13  Score=101.51  Aligned_cols=56  Identities=27%  Similarity=0.585  Sum_probs=51.9

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecC-CcEEEEcCCCeEec
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQKY  441 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~-g~~G~~P~~~v~~~  441 (563)
                      .+++|+|+|.++.++||+|++||+|.|+.+.+++||.|+..+ |+.||||++||+++
T Consensus         2 ~~~~al~d~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~   58 (59)
T 1yn8_A            2 QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYI   58 (59)
T ss_dssp             EEEEECSCBCCCSTTBCCBCTTCEEEEEEEEETTEEEEECTTSSCEEEEEGGGEEEC
T ss_pred             CEEEECccCCCCCCCCcCCCCCCEEEEEEcCCCCeEEEEECCCCCEEEEehHHeEEC
Confidence            368999999999999999999999999999999999998654 89999999999876

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A

Probab=99.45  E-value=1.2e-13  Score=107.41  Aligned_cols=61  Identities=21%  Similarity=0.349  Sum_probs=53.8

Q ss_pred             ccceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCC---eeeeecCCceEEcCCCCC
Q psy10852        480 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNG---KTGHFPFTHVEFIPTNET  542 (563)
Q Consensus       480 ~~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g---~~G~~P~~~v~~~~~~~~  542 (563)
                      ..+++|+++|.  +++++||+|++||+|.|+++.++|||+|+++|   ++||||++||+.+....+
T Consensus        10 ~~~~~alydy~--~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~G~~P~~yv~~~~~~~p   73 (76)
T 2ed1_A           10 VRRVKTIYDCQ--ADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHILSDSGP   73 (76)
T ss_dssp             CEEEEESSCCC--CSSSSBCCCCSSCEEEESSCCSSSEEEEEETTCTTCEEEEEGGGEEECCCCCC
T ss_pred             CeEEEECccCC--CCCcCCcCcCCCCEEEEEEecCCCEEEEEECCCCCCEEEEehHHeEECCCCCC
Confidence            34789999998  55588999999999999998889999999977   999999999999976543

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A

Probab=99.44  E-value=1.3e-13  Score=103.45  Aligned_cols=58  Identities=31%  Similarity=0.635  Sum_probs=53.6

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  443 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~  443 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||.|+ .+|+.||||++||+++.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~   63 (64)
T 2ak5_A            6 QLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGT-HNGRTGWFPSNYVREIKP   63 (64)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEE-ETTEEEEEEGGGEEECCC
T ss_pred             CEEEEEccccCCcCcCcccCCCCCEEEEeEecCCCEEEEE-ECCCEEEEehHHeEEcCC
Confidence            3479999999999999999999999999999999999998 599999999999998754

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A

Probab=99.44  E-value=1.4e-13  Score=101.88  Aligned_cols=55  Identities=36%  Similarity=0.861  Sum_probs=50.9

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEec--CCCcEEEEecCCcEEEEcCCCeEec
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVPYVQKY  441 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~--~~~W~~~~~~~g~~G~~P~~~v~~~  441 (563)
                      .+++|+|+|.++.++||+|++||+|.|+.+.  +++||.|+. +|+.||||++||+.+
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~-~g~~G~~P~~yv~~l   60 (60)
T 1oot_A            4 PKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRV-NGREGIFPANYVELV   60 (60)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSCTTSEEEEEE-TTEEEEEEGGGEEEC
T ss_pred             cEEEECccCCcCCcCEeeEcCCCEEEEEEeCCCCCCeEEEEE-CCEEEEEeHHHEEEC
Confidence            4799999999999999999999999999987  689999985 999999999999864

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.44  E-value=1.7e-13  Score=144.73  Aligned_cols=96  Identities=32%  Similarity=0.566  Sum_probs=79.1

Q ss_pred             CCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeC-CceecCh
Q psy10852          7 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDL   85 (563)
Q Consensus         7 ~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~sl   85 (563)
                      .++.++||||.|+|++||++|+. +.+|+||||.|++.+|.|+|||+.++.|+||+|.....+     |.+. ...|.++
T Consensus        76 ~~~~~~wyhg~i~r~~ae~~L~~-~~~G~FlvR~S~~~~g~~~Lsv~~~~~v~H~~I~~~~~~-----~~i~~~~~F~sl  149 (450)
T 1k9a_A           76 KLSLMPWFHGKITREQAERLLYP-PETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMYHASK-----LSIDEEVYFENL  149 (450)
T ss_dssp             TEESCTTBCTTCCHHHHHHHTCS-CCTTEEEEEECSSSTTSEEEEEECSSSEEEEEEEEETTE-----EESSSSSCBSSH
T ss_pred             ccccccccccCcCHHHhhhhhcc-CCCceEEEEecCCCCCceEEEEEeCCeeeEEEEEecCCc-----eEeccccccccH
Confidence            45778999999999999999976 345999999999989999999999999999999765433     7775 5899999


Q ss_pred             HhhHHhhhcccCC-Cccccccccc
Q psy10852         86 PSLLAFYKVHYLD-TSPLIKPATK  108 (563)
Q Consensus        86 ~~Li~~y~~~~~~-~~~L~~p~~~  108 (563)
                      .+||+||.....+ .+.|..|+..
T Consensus       150 ~eLv~~y~~~~~~~~~~l~~~~~~  173 (450)
T 1k9a_A          150 MQLVEHYTTDADGLCTRLIKPKVM  173 (450)
T ss_dssp             HHHHHHHHHCCTTSSSCCCEECCC
T ss_pred             HHHHhhhcccccchhhhccccccc
Confidence            9999999987654 3345555543

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A

Probab=99.44  E-value=8.5e-14  Score=102.98  Aligned_cols=57  Identities=26%  Similarity=0.612  Sum_probs=53.0

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccC
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  443 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~  443 (563)
                      ..++|+|+|.++.++||+|++||+|.|+.+ +++||.|++.+|+.||||++||+++..
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~g~~G~~P~~yv~~~~~   58 (60)
T 1i07_A            2 KYAKSKYDFVARNSSELSVMKDDVLEILDD-RRQWWKVRNASGDSGFVPNNILDIMRT   58 (60)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEECGG-GCCEEEEECTTSCEEEEEGGGEEEECC
T ss_pred             eEEEECccCCCCCCCcccCCCCCEEEEEEc-CCCeEEEEECCCCEEEEEHHHeEEccC
Confidence            368999999999999999999999999999 889999987799999999999998754

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A

Probab=99.44  E-value=1.4e-13  Score=104.53  Aligned_cols=56  Identities=21%  Similarity=0.155  Sum_probs=50.4

Q ss_pred             ccceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCC-----eeeeecCCceEEc
Q psy10852        480 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNG-----KTGHFPFTHVEFI  537 (563)
Q Consensus       480 ~~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g-----~~G~~P~~~v~~~  537 (563)
                      +..++|+++|.  +.+++||+|++||+|.|+++.++|||.|++.+     ++||||++||+.+
T Consensus         7 ~~~~~Alydy~--~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~g~~~~~G~fP~~yv~~~   67 (68)
T 1tg0_A            7 PFKVVAQFPYK--SDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVAVQ   67 (68)
T ss_dssp             SEEEEESSCBC--CSCTTBCCBCTTCEEEEEEECSSSEEEEEEECTTSCEEEEEEEGGGEEEC
T ss_pred             CEEEEECeeEC--cCCcCCCCCCCCCEEEEEEecCCCeEEEEECCCCCCCEEEEEchHHEEEC
Confidence            34789999998  55588999999999999999999999999976     9999999999876

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=2.2e-13  Score=105.04  Aligned_cols=58  Identities=29%  Similarity=0.528  Sum_probs=51.9

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEe---CCCCEEEEEeCCeeeeecCCceEEcCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKT---NINGQWEGELNGKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~---~~~~w~~g~~~g~~G~~P~~~v~~~~~~  540 (563)
                      .+++|+++|.  +++++||+|++||+|.|+.+   .++|||.|+++|++||||++||+.+...
T Consensus         9 ~~~~alydy~--~~~~~eLsf~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   69 (73)
T 2dl7_A            9 CFVKALYDYE--GQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEELSSG   69 (73)
T ss_dssp             EEEEESSCBC--CSSTTBCCBCTTCEEEEEECCCSSSSSCEEEEETTEEEEECSSSEEECCSS
T ss_pred             EEEEECccCC--cCCCCcCCCCCCCEEEEEECCCCCCCCcEEEEECCCEEEEChHHEEECCCC
Confidence            4689999998  55588999999999999998   4789999999999999999999998654

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A

Probab=99.44  E-value=1.8e-13  Score=100.54  Aligned_cols=55  Identities=31%  Similarity=0.331  Sum_probs=50.2

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcC
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP  538 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~  538 (563)
                      .|+|+++|.  +.+++||+|++||+|.|+++.++|||.|+.+|+.||||++||+.+.
T Consensus         3 ~a~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~   57 (58)
T 4e6r_A            3 PAFVXFAYV--AEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYVLEEV   57 (58)
T ss_dssp             EEEECSCBC--CCSTTBCCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEECccCC--CCCCCEeeEeCCCEEEEeEcCCCCEEEEEECCcEEEEehHHEEECC
Confidence            478999998  5558899999999999999999999999999999999999999764

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=2.2e-13  Score=108.44  Aligned_cols=59  Identities=20%  Similarity=0.292  Sum_probs=53.3

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEe--CCCCEEEEEeCCeeeeecCCceEEcCCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKT--NINGQWEGELNGKTGHFPFTHVEFIPTNE  541 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~--~~~~w~~g~~~g~~G~~P~~~v~~~~~~~  541 (563)
                      .+++|+++|.  +.+++||+|++||+|.|+.+  .++|||.|+++|++||||++||+.+....
T Consensus         9 ~~~~al~dy~--~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~~~   69 (85)
T 2dlp_A            9 GYVIALRSYI--TDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQPAAAPD   69 (85)
T ss_dssp             CEEEESSCBC--CSSSSBCCBCTTCEEEECCCSCCCTTEEEEESSSCEEEEETTSEEECCCSC
T ss_pred             EEEEECCCCC--ccCcCCccCcCCCEEEEEEccCCCCCeEEEEECCEEEEechHHeEECCCcC
Confidence            4789999999  55588999999999999997  78999999999999999999999997654

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}

Probab=99.44  E-value=2.4e-13  Score=104.85  Aligned_cols=58  Identities=33%  Similarity=0.633  Sum_probs=52.4

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeC--CCCEEEEEeCCeeeeecCCceEEcCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTN--INGQWEGELNGKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~--~~~w~~g~~~g~~G~~P~~~v~~~~~~  540 (563)
                      .+++|+++|.  +.+++||+|++||+|.|+.+.  ++|||.|+++|+.||||++||+.+...
T Consensus        10 ~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   69 (73)
T 2k9g_A           10 DYCKVIFPYE--AQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPD   69 (73)
T ss_dssp             EEEEECSCBC--CSSTTBCCBCTTCEEEEEECCSSSTTEEEEEETTEEEEEEGGGEEECCSS
T ss_pred             cEEEECccCC--CCCCCeeeECCCCEEEEEECCCCCCCEEEEEECCeEEEEchHHEEECCcc
Confidence            4789999998  555899999999999999985  799999999999999999999998654

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A

Probab=99.44  E-value=1.8e-13  Score=100.57  Aligned_cols=56  Identities=18%  Similarity=0.455  Sum_probs=52.1

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEecc
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS  442 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~  442 (563)
                      ..++|+|+|.++.++||+|++||+|.|+.+.+++||.|. .+|+.||||++||+++.
T Consensus         2 ~~a~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~-~~g~~G~~P~~yv~~~~   57 (58)
T 4e6r_A            2 IPAFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGS-YNGQIGWFPSNYVLEEV   57 (58)
T ss_dssp             EEEEECSCBCCCSTTBCCBCTTCEEEEEEECTTSEEEEE-ETTEEEEEEGGGEEECC
T ss_pred             EEEEECccCCCCCCCEeeEeCCCEEEEeEcCCCCEEEEE-ECCcEEEEehHHEEECC
Confidence            368999999999999999999999999999999999995 79999999999998763

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=2.4e-13  Score=103.32  Aligned_cols=58  Identities=31%  Similarity=0.647  Sum_probs=54.0

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  443 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~  443 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||+|+ .+|+.||||++||+++..
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~   64 (68)
T 1x2k_A            7 GKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGT-SKGRTGLIPSNYVAEQSG   64 (68)
T ss_dssp             SEEEEESSCCCCCSTTBCCCCSSCEEEEEECSCSSEEEEE-SSSCEEEEETTTEEECCC
T ss_pred             cEEEEECceECCCCCCcccCCCCCEEEEEEcCCCCEEEEE-ECCcEEEEehHHeEEcCC
Confidence            4579999999999999999999999999999889999998 599999999999998854

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=1.8e-13  Score=104.01  Aligned_cols=57  Identities=26%  Similarity=0.306  Sum_probs=51.8

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT  539 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~  539 (563)
                      .+++|+++|.  +.+++||+|++||+|.|+++.+++||.|+.+|++||||++||+.+.+
T Consensus         8 ~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   64 (68)
T 1x2k_A            8 KVFRALYTFE--PRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQSG   64 (68)
T ss_dssp             EEEEESSCCC--CCSTTBCCCCSSCEEEEEECSCSSEEEEESSSCEEEEETTTEEECCC
T ss_pred             EEEEECceEC--CCCCCcccCCCCCEEEEEEcCCCCEEEEEECCcEEEEehHHeEEcCC
Confidence            4689999998  55588999999999999999889999999999999999999998844

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A

Probab=99.44  E-value=1.5e-13  Score=103.41  Aligned_cols=57  Identities=16%  Similarity=0.021  Sum_probs=50.7

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEE--eCCeeeeecCCceEEcC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVEFIP  538 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~--~~g~~G~~P~~~v~~~~  538 (563)
                      ..++|+++|.++ .+++||+|++||+|.|+++.++|||.|+  .+|+.||||++||+.++
T Consensus         6 ~~~~alydy~~~-~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~~   64 (65)
T 2j05_A            6 RRVRAILPYTKV-PDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVG   64 (65)
T ss_dssp             CEEEESSCBCCC-TTSSBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             cEEEEccccCCC-CCCCcCcCCCCCEEEEeEecCCCEEEEEECCCCCEEEEEhHHeEECc
Confidence            368999999940 5688999999999999999899999999  67999999999999875

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}

Probab=99.44  E-value=2.3e-13  Score=104.46  Aligned_cols=60  Identities=20%  Similarity=0.311  Sum_probs=53.4

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeC-CCCEEEEEe--CCeeeeecCCceEEcCCCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTN-INGQWEGEL--NGKTGHFPFTHVEFIPTNET  542 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~-~~~w~~g~~--~g~~G~~P~~~v~~~~~~~~  542 (563)
                      .+++|+++|.  +.+++||+|++||+|.|+.+. ++|||.|+.  +|+.||||++||+.+.....
T Consensus         7 ~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~~~   69 (71)
T 2jt4_A            7 KRGIVQYDFM--AESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVRDKKH   69 (71)
T ss_dssp             EEEEECSCBC--CSSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEEETTTSSC
T ss_pred             CEEEEcccCC--CCCCCcccCCCCCEEEEEECCCCCCCEEEEECCCCCeEEechHHeEECCCcCC
Confidence            4789999998  555889999999999999987 799999999  89999999999999976543

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}

Probab=99.44  E-value=1e-13  Score=102.44  Aligned_cols=54  Identities=33%  Similarity=0.691  Sum_probs=50.8

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeE
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ  439 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~  439 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||.|+ .+|+.||||++||+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~   59 (60)
T 2gnc_A            6 PEFAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGR-HNGIDGLVPHQYIV   59 (60)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEE-ETTEEEEEEGGGEE
T ss_pred             CEEEEECCCCCcCCcCCcCCCCCCEEEEEEecCCCEEEEE-ECCeEEEEeHhhEE
Confidence            4589999999999999999999999999999889999998 48999999999997

>2izv_A Suppressor of cytokine signaling 4; signal transduction inhibitor, growth regulation, signal transduction, SH2 domain, nuclear protein; 2.55A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1

Probab=99.44  E-value=3e-13  Score=123.23  Aligned_cols=93  Identities=25%  Similarity=0.358  Sum_probs=78.1

Q ss_pred             CCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeCC-----cccCC
Q psy10852        285 RNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD-----KTFSD  359 (563)
Q Consensus       285 ~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~~-----~~f~s  359 (563)
                      ...||+|.|+|.+|+++|.. ..+|+||||+|++..+.|+||++.++.++|++|...+.     +|.+..     ..|+|
T Consensus        33 ~~~WYhG~isR~eAE~lL~~-~~dGtFLVR~S~~~~~~lsLSvr~~~~v~H~rI~~~~g-----~f~l~~~~~~~~~F~S  106 (187)
T 2izv_A           33 NNPCYWGVMDKYAAEALLEG-KPEGTFLLRDSAQEDYLFSVSFRRYSRSLHARIEQWNH-----NFSFDAHDPCVFHSPD  106 (187)
T ss_dssp             HCTTEEEECCHHHHHHHHTT-CCTTEEEEEECSSTTCSEEEEEEETTEEEEEECEEETT-----EEESCTTCTTSCCBSS
T ss_pred             cCCccccCCCHHHHHHHhcC-CCCCcEEEEECCCCCceEEEEEeeCCeEEEEEEEECCC-----EEEEeccCCCccccCC
Confidence            34899999999999999975 45799999999987788999999999999999998643     388864     27999


Q ss_pred             hhhHHhhhhcccCCC---Ccccccccc
Q psy10852        360 LPSLLAFYKVHYLDT---SPLIKPATK  383 (563)
Q Consensus       360 l~~lv~~y~~~~~~~---~~l~~P~~~  383 (563)
                      +.+||+||+.++...   ..|..|+++
T Consensus       107 L~eLV~hY~~~~~~~~~~~~L~~Pv~r  133 (187)
T 2izv_A          107 ITGLLEHYKDPSACMFFEPLLSTPLIR  133 (187)
T ss_dssp             HHHHHHHTCCGGGCCTTSCCCCEECCC
T ss_pred             HHHHHHHHHhccccccccccccccccc
Confidence            999999999887654   457777655

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*

Probab=99.44  E-value=1.6e-13  Score=102.23  Aligned_cols=56  Identities=21%  Similarity=0.163  Sum_probs=50.5

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEE--eCCeeeeecCCceEEcC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVEFIP  538 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~--~~g~~G~~P~~~v~~~~  538 (563)
                      ..++|+++|.  +++++||+|++||+|.|+++.++|||.|+  .+|+.||||++||+.+.
T Consensus         4 ~~~~al~~y~--~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~fP~~yv~~~~   61 (62)
T 2fpe_A            4 QTHRAIFRFV--PRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVT   61 (62)
T ss_dssp             CCEEECSCBC--CSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             CEEEECccCC--ccCcCcCcCCCCCEEEEEEecCCCEEEEEECCCCCEEEechHHEEECc
Confidence            3689999999  45588999999999999999999999999  57999999999999874

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=1.4e-13  Score=108.28  Aligned_cols=58  Identities=28%  Similarity=0.359  Sum_probs=51.7

Q ss_pred             ccceEEeecCCCCCCCCCCeeccCCCEEEEEEeCC--CCEEEEEeCCeeeeecCCceEEcCC
Q psy10852        480 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI--NGQWEGELNGKTGHFPFTHVEFIPT  539 (563)
Q Consensus       480 ~~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~--~~w~~g~~~g~~G~~P~~~v~~~~~  539 (563)
                      ..+++|+++|.  +.+++||+|++||+|.|+++.+  +|||+|+++|++||||++||+.+..
T Consensus        17 ~~~~~al~dy~--~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   76 (80)
T 2d8h_A           17 PIEVTALYSFE--GQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVTMNSG   76 (80)
T ss_dssp             CEEEECSSCEE--CSSTTBCEECTTCEEEEEECCSCSSSEEEEEETTEEEEEEGGGCCBCCC
T ss_pred             CEEEEECccCC--cCCCCeeeEcCCCEEEEeECcCCCCCeEEEEECCEEEEEchhHeEEcCC
Confidence            44689999998  5558899999999999999875  8999999999999999999998754

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A

Probab=99.44  E-value=1.9e-13  Score=103.84  Aligned_cols=58  Identities=33%  Similarity=0.382  Sum_probs=52.4

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~  540 (563)
                      ..++|+++|.  +.+++||+|++||+|.|+++.++|||.|+.+|+.||||++||+.+...
T Consensus         8 ~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   65 (68)
T 2dl3_A            8 RPARAKFDFK--AQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIELLSGP   65 (68)
T ss_dssp             EEEEESSCBC--CSSTTBCCBCTTCEEEEEECCSTTEEEEECSSCEEEEETTTEEECCSC
T ss_pred             cEEEECccCC--CCCcCCccCCCCCEEEEeEecCCCEEEEEECCCEEEEchHHEEECCCC
Confidence            3689999998  555889999999999999998999999999999999999999998643

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.44  E-value=1.3e-13  Score=104.31  Aligned_cols=56  Identities=30%  Similarity=0.743  Sum_probs=50.8

Q ss_pred             eeEEEeecccCCCCC-CCCCCCCCEEEEEEecC-----CCcEEEEecCCcEEEEcCCCeEec
Q psy10852        386 EKVIAKYDFDGNDPD-DLPFKKNDILIVVSKDE-----EHWWTAQNISGEVGSIPVPYVQKY  441 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~-el~~~~g~~v~v~~~~~-----~~W~~~~~~~g~~G~~P~~~v~~~  441 (563)
                      .+++|+|+|.++.++ ||+|++||+|.|+.+.+     ++||.|+..+|+.|+||++||+.+
T Consensus         8 ~~~~aly~y~a~~~~dELsf~~Gd~i~Vl~~~~~~~~~~gWW~g~~~~G~~G~~PsnyV~~l   69 (69)
T 1nm7_A            8 HFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII   69 (69)
T ss_dssp             -CEEECSCCCCSSTTSCCCCCTTCEEEECCSSSSSCCSSSCEEEEETTTEEEEECGGGEEEC
T ss_pred             eEEEEEecccCCCCCCccCCCCCCEEEEEecCCCCCCCCCeeEEEeCCCCEEEecHHHEEEC
Confidence            479999999999999 99999999999999875     499999966899999999999864

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}

Probab=99.44  E-value=1.6e-13  Score=100.70  Aligned_cols=55  Identities=31%  Similarity=0.730  Sum_probs=51.4

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEe
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK  440 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~  440 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||.|+ .+|+.||||++||++
T Consensus         3 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~   57 (58)
T 1zlm_A            3 VKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGT-SKGRTGLIPSNYVAE   57 (58)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEE-ETTEEEEEEGGGEEE
T ss_pred             cEEEEECccCCCCCCCCccCCCCCEEEEEEeCCCCEEEEE-ECCCEEEEehHHEEe
Confidence            3579999999999999999999999999999889999998 599999999999975

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A

Probab=99.44  E-value=1.6e-13  Score=104.25  Aligned_cols=57  Identities=28%  Similarity=0.511  Sum_probs=51.6

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEec-CC---cEEEEcCCCeEec
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SG---EVGSIPVPYVQKY  441 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~-~g---~~G~~P~~~v~~~  441 (563)
                      ..+++|+|+|.++.++||+|++||+|.|+.+.+++||.|+.. +|   +.|+||++||+++
T Consensus         7 ~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~g~~~~~G~fP~~yv~~~   67 (68)
T 1tg0_A            7 PFKVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVAVQ   67 (68)
T ss_dssp             SEEEEESSCBCCSCTTBCCBCTTCEEEEEEECSSSEEEEEEECTTSCEEEEEEEGGGEEEC
T ss_pred             CEEEEECeeECcCCcCCCCCCCCCEEEEEEecCCCeEEEEECCCCCCCEEEEEchHHEEEC
Confidence            457999999999999999999999999999999999999843 34   8999999999875

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} SCOP: b.34.2.1

Probab=99.44  E-value=1.9e-13  Score=105.57  Aligned_cols=60  Identities=15%  Similarity=0.274  Sum_probs=52.7

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET  542 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~~~  542 (563)
                      .+++|+++|.  +.+++||+|++||+|.|+++.+++||.|+.+|++||||++||+.+.....
T Consensus         6 ~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~   65 (73)
T 3thk_A            6 ELVLALYDYQ--EKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPAQS   65 (73)
T ss_dssp             CEEEECSCBC--CCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECCC---
T ss_pred             EEEEECcCCC--cCCCCccCCCCCCEEEEEECCCCCeEEEEECCcEEEEehHHeEECCCCCC
Confidence            4789999998  55588999999999999999899999999999999999999999976543

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A

Probab=99.44  E-value=1.8e-13  Score=103.87  Aligned_cols=58  Identities=26%  Similarity=0.693  Sum_probs=53.5

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  443 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~  443 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+. ++||+++..+|+.||||++||+++..
T Consensus         8 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~~g~~G~~P~~yv~~~~~   65 (68)
T 2k2m_A            8 LKWVLCNYDFQARNSSELSVKQRDVLEVLDDS-RKWWKVRDPAGQEGYVPYNILTPYPA   65 (68)
T ss_dssp             CCEEEESSCBCCCSSSBCCBCTTCEEEEEECS-SSEEEEECTTSCCEEEEGGGEEECCS
T ss_pred             CEEEEECccCCCCCCCcccCCCCCEEEEEEcC-CCeEEEEeCCCCEEEEEhhhEEEcCC
Confidence            45799999999999999999999999999986 89999987789999999999998754

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A

Probab=99.43  E-value=2e-13  Score=105.37  Aligned_cols=59  Identities=27%  Similarity=0.540  Sum_probs=54.8

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||.|+ .+|+.||||++||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   65 (73)
T 2dbm_A            7 GPCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGM-LHGHSGFFPINYVEILVAL   65 (73)
T ss_dssp             CCEEEESSCBCCCSTTCCCBCTTCEEECCBCSSSSEEEEE-ETTEEEEEESSSEEESSCC
T ss_pred             CCEEEEccccCCCCCCCccCCCCCEEEEEEecCCCEEEEE-ECCCEEEechHHEEEccCC
Confidence            5579999999999999999999999999999899999998 5999999999999988654

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A

Probab=99.43  E-value=2.8e-13  Score=102.96  Aligned_cols=59  Identities=27%  Similarity=0.577  Sum_probs=54.7

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||+|+ .+|+.||||++||+++...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~-~~g~~G~~P~~yv~~~~~~   65 (68)
T 2dl3_A            7 GRPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGE-HHGRVGIFPRTYIELLSGP   65 (68)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSTTEEEEE-CSSCEEEEETTTEEECCSC
T ss_pred             CcEEEECccCCCCCcCCccCCCCCEEEEeEecCCCEEEEE-ECCCEEEEchHHEEECCCC
Confidence            4579999999999999999999999999999889999998 7999999999999988653

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=2.5e-13  Score=104.37  Aligned_cols=59  Identities=29%  Similarity=0.626  Sum_probs=54.5

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ..+++|+|+|.++.++||+|++||+|.|+.+.+++||.|+. +|+.||||++||+.+...
T Consensus         9 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~-~g~~G~~P~~yv~~~~~~   67 (72)
T 2dl8_A            9 PIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRH-NGIDGLIPHQYIVVQDTS   67 (72)
T ss_dssp             CEEEEESSCBCCSSSSBCCBCTTCEEEEEEEEETTEEEEEE-TTEEEEECSSSEEECCSS
T ss_pred             CEEEEECccCCcCCCCEeccCCCCEEEEEeecCCCEEEEEE-CCEEEEEchHHeEEcCCC
Confidence            45799999999999999999999999999998899999985 899999999999988654

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.43  E-value=3.8e-13  Score=108.96  Aligned_cols=59  Identities=29%  Similarity=0.543  Sum_probs=54.2

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEec--CCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~--~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ...++|||+|.++.++||+|++||+|.|+.+.  ++|||+|+ .+|+.||||++||+.+...
T Consensus         5 ~~~~~Alydy~a~~~~eLsf~~Gd~i~v~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~~   65 (93)
T 1uff_A            5 SSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGS-FQGNFGWFPCNYVEKMPSS   65 (93)
T ss_dssp             CCCEEESSCBCCCSSSCCCBCTTCEEEECSSCCCSSSEEEEE-ETTEEEEEETTTEEECCSS
T ss_pred             CEEEEECccCCCCCCCCcCCCCCCEEEEeEccCCCCCEEEEE-ECCCEEEechHHeEEcCCc
Confidence            45799999999999999999999999999986  78999998 7899999999999998764

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.43  E-value=9.1e-14  Score=105.87  Aligned_cols=58  Identities=19%  Similarity=0.224  Sum_probs=51.9

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNE  541 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~~  541 (563)
                      ..++|+++|.  +..++||+|++||+|.|+++ ++|||+|+.+|++||||++||+.++...
T Consensus         9 ~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   66 (69)
T 1uhf_A            9 EEYIALYPYS--SVEPGDLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYVKPKDSGP   66 (69)
T ss_dssp             EEEECSSCBC--CSSSSBCCBCTTCEEEECEE-ETTEEEECSTTCCEEECGGGCEECCCCC
T ss_pred             CEEEEeeeEC--CCCcCccCCCCCCEEEEEEe-CCCEEEEEeCCcEEEEchHHeEECCCCC
Confidence            4689999998  55588999999999999998 7899999999999999999999987653

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}

Probab=99.43  E-value=1.9e-13  Score=104.85  Aligned_cols=59  Identities=25%  Similarity=0.447  Sum_probs=53.5

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEe-cCCcEEEEcCCCeEeccCC
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~-~~g~~G~~P~~~v~~~~~~  444 (563)
                      ..++|+|+|.++.++||+|++||+|.|+.+.+++||.|++ .+|+.|+||++||+++...
T Consensus         7 ~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~fP~~yv~~~~~~   66 (71)
T 2fpf_A            7 QTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVTKE   66 (71)
T ss_dssp             CCEEECSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTTEEEEEEGGGEEECC--
T ss_pred             eEEEECeeECccCCCcccCcCCcEEEEeEecCCCEEEEEECCCCCEEEeehHHEEECCCC
Confidence            4699999999999999999999999999999999999986 6899999999999988653

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.43  E-value=2.1e-13  Score=103.31  Aligned_cols=56  Identities=20%  Similarity=0.148  Sum_probs=50.8

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEE-eCCeeeeecCCceEEcCC
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGE-LNGKTGHFPFTHVEFIPT  539 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~-~~g~~G~~P~~~v~~~~~  539 (563)
                      +++|+++|.  +.+++||+|++||+|.|+++.++|||.|+ .+|+.||||++||+.++.
T Consensus         4 ~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~   60 (67)
T 1gl5_A            4 IVVAMYDFQ--ATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKKS   60 (67)
T ss_dssp             CEEECSCBC--CSSSSBCCBCTTCEEEEEECSSSSEEEEECSSSCEEEEETTSEESSTT
T ss_pred             EEEECccCC--CCCCCeecCCcCCEEEEEEccCCCcEEEEECCCCEEEEEhHhEEEcCc
Confidence            689999999  55588999999999999999889999999 689999999999998833

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.43  E-value=2.5e-13  Score=143.70  Aligned_cols=99  Identities=32%  Similarity=0.571  Sum_probs=80.3

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEecCCCCcceEEEEEE-----CCeEEEEEEEEecCCCcceEEEeC
Q psy10852          5 FDPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKITNTEQQTCYKIG   78 (563)
Q Consensus         5 ~~~~~~~~w~~g~i~r~~ae~~L~~-~~~~G~FLvR~s~~~~~~~~lsv~~-----~~~v~h~~I~~~~~~~~~~~~~~~   78 (563)
                      .+.++.++||||.|+|++||++|.. ...+|+||||.|++.+|.|+|||+.     ++.++||+|....++    .|.+.
T Consensus        64 ~~~le~~~W~~g~i~r~~ae~~L~~~~~~~G~FLvR~s~~~~g~y~lsv~~~~~~~~~~v~H~~I~~~~~g----~~~i~  139 (454)
T 1qcf_A           64 VDSLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNG----GFYIS  139 (454)
T ss_dssp             TTCGGGSTTEETTCCHHHHHHHHHSTTCCTTCEEEEECSSSTTSEEEEEEEEETTTEEEEEEEEEEECTTS----CEESS
T ss_pred             ccccccccccccccchhhhhhhhhcCCCCCceEEEEECcCCCCeEEEEEEecccCCCCceEEEEEEEcCCC----cEEEe
Confidence            3567778999999999999999965 4567999999999889999999998     779999999986654    26664


Q ss_pred             -CceecChHhhHHhhhcccCCC-cccccccc
Q psy10852         79 -DKTFSDLPSLLAFYKVHYLDT-SPLIKPAT  107 (563)
Q Consensus        79 -~~~F~sl~~Li~~y~~~~~~~-~~L~~p~~  107 (563)
                       ...|.++.+||+||+....+. ..+..||.
T Consensus       140 ~~~~F~sl~eLv~~y~~~~~~l~~~~~~~~~  170 (454)
T 1qcf_A          140 PRSTFSTLQELVDHYKKGNDGLCQKLSVPCM  170 (454)
T ss_dssp             SSSCBSSHHHHHHHHTSSCTTSSSCCCSBCC
T ss_pred             CccccCCHHHHHHHHHhccCCcccccccccc
Confidence             579999999999999876543 33444554

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A

Probab=99.43  E-value=1.9e-13  Score=99.99  Aligned_cols=56  Identities=59%  Similarity=1.089  Sum_probs=52.2

Q ss_pred             eeeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEeeCCCeeeEEecCceeec
Q psy10852        111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY  166 (563)
Q Consensus       111 ~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~~~g~~G~fP~~yv~~~  166 (563)
                      ..++|+|+|.++.+++|+|++||+|.|+++.+++||.|++.+|+.|+||++||+++
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   57 (57)
T 1cka_A            2 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY   57 (57)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEC-
T ss_pred             cEEEECCcCCCCCCCCCCCCCCCEEEEEEecCCCcEEEEeCCCCEEEEeHHHEEEC
Confidence            46899999999999999999999999999999999999988999999999999863

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=3.2e-13  Score=103.26  Aligned_cols=60  Identities=20%  Similarity=0.392  Sum_probs=55.1

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEec-CCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~-~g~~G~~P~~~v~~~~~~  444 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||.|++. +|+.||||++||+++...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~~~~   67 (70)
T 2ct3_A            7 GTPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPVSGP   67 (70)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTEEEEEEEECSSSCEEEEESSSCCEEEECTTTEEETTCS
T ss_pred             CcEEEECccCCcCCcCCccCCCCCEEEEEEECCCCEEEEEECCCCCEEEechHHeEECCCC
Confidence            468999999999999999999999999999999999999865 699999999999988654

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}

Probab=99.43  E-value=2.2e-13  Score=100.01  Aligned_cols=54  Identities=28%  Similarity=0.339  Sum_probs=49.4

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEE
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEF  536 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~  536 (563)
                      .+++|+++|.  +.+++||+|++||+|.|+.+.++|||.|+.+|+.||||++||+.
T Consensus         4 ~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~   57 (58)
T 1zlm_A            4 KVFRALYTFE--PRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE   57 (58)
T ss_dssp             EEEEESSCBC--CSSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEE
T ss_pred             EEEEECccCC--CCCCCCccCCCCCEEEEEEeCCCCEEEEEECCCEEEEehHHEEe
Confidence            3689999999  55588999999999999999889999999999999999999975

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A

Probab=99.43  E-value=1.4e-13  Score=103.65  Aligned_cols=57  Identities=21%  Similarity=0.547  Sum_probs=53.0

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEecc
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS  442 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~  442 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||.|+ .+|+.|+||++||+.+.
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~-~~g~~G~~P~~yv~~~~   63 (65)
T 3u23_A            7 KRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGT-LNNKLGLFPSNFVKELE   63 (65)
T ss_dssp             -CEEEECSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEE-ETTEEEEEEGGGEEECC
T ss_pred             CeEEEEeeeeCCCCcCCcCCCCCCEEEEEEecCCCEEEEE-ECCCEEEeehHHEEECc
Confidence            4579999999999999999999999999999889999998 79999999999999874

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}

Probab=99.43  E-value=2.5e-13  Score=103.11  Aligned_cols=59  Identities=25%  Similarity=0.537  Sum_probs=54.1

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+. ++||+|++.+|+.||||++||+++...
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~~g~~G~~P~~yv~~~~~~   65 (68)
T 1wxt_A            7 GLKMQVLYEFEARNPRELTVVQGEKLEVLDHS-KRWWLVKNEAGRSGYIPSNILEPLSGP   65 (68)
T ss_dssp             CEEEEESSCBCCCSSSBCCBCTTCEEEEEECS-SSEEEEECTTSCEEEEEGGGEECCCCS
T ss_pred             CeEEEECceECCCCcCcCCCCCCCEEEEEEcC-CCEEEEEECCCCEEEEEhHHcEECCCC
Confidence            45799999999999999999999999999995 899999878999999999999987653

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.43  E-value=1.7e-13  Score=103.75  Aligned_cols=57  Identities=19%  Similarity=0.398  Sum_probs=50.8

Q ss_pred             eeeEEEeecccCCCCCC-CCCCCCCEEEEEEe-cCCCcEEEEec-CCcEEEEcCCCeEec
Q psy10852        385 IEKVIAKYDFDGNDPDD-LPFKKNDILIVVSK-DEEHWWTAQNI-SGEVGSIPVPYVQKY  441 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~e-l~~~~g~~v~v~~~-~~~~W~~~~~~-~g~~G~~P~~~v~~~  441 (563)
                      ..+++|+|+|.++.+++ |+|++||+|.|+.+ .+++||.|++. +|+.||||++||+++
T Consensus         7 ~~~~~al~dy~~~~~~e~Lsf~~Gd~i~v~~~~~~~gW~~g~~~~~g~~G~fP~~yv~~l   66 (67)
T 3rnj_A            7 RMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRVL   66 (67)
T ss_dssp             CCEEEESSCBCCCSCTTBCCBCTTCEEEECSSSCBTTEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CeEEEEccccCCCCCCCCccCCCCCEEEEeeccCCCCCEEEEECCCCCEEEEEHHHeEEC
Confidence            45799999999988777 99999999999965 57899999865 899999999999976

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}

Probab=99.43  E-value=1.5e-13  Score=104.73  Aligned_cols=59  Identities=32%  Similarity=0.579  Sum_probs=54.2

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  443 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~  443 (563)
                      ...++|+|+|.++.+++|+|++||+|.|+.+.+++||.|+..+|+.||||++||++...
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~   64 (69)
T 4esr_A            6 APTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVASETL   64 (69)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEEETTEEEEEEGGGEEEHHH
T ss_pred             cCEEEECccCCCCCcCcCCCCCCCEEEEEEecCCCeEEEEeCCCCEEEEchHHeEECcc
Confidence            45799999999999999999999999999999999999986699999999999997643

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A

Probab=99.43  E-value=2.3e-13  Score=103.08  Aligned_cols=59  Identities=22%  Similarity=0.589  Sum_probs=53.5

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecC-CcEEEEcCCCeEeccC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQKYSE  443 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~-g~~G~~P~~~v~~~~~  443 (563)
                      ..+++|+|+|.++.++||+|++||+|.|+.+.+++||.|+..+ |+.||||++||+.+..
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   65 (67)
T 2o9s_A            6 TGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIKR   65 (67)
T ss_dssp             SEEEEECSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEECTTSSCEEEEEGGGEEEEEC
T ss_pred             CEEEEECccCCcCCcCccCCCCCCEEEEEEecCCCEEEEEECCCCCEEEEChHHeEECCC
Confidence            4579999999999999999999999999999889999998543 6999999999998754

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}

Probab=99.43  E-value=2.8e-13  Score=104.07  Aligned_cols=59  Identities=27%  Similarity=0.597  Sum_probs=53.7

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+ +++||.|++.+|+.||||++||+++...
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~~~~~   65 (72)
T 2jw4_A            7 EVVVVAKFDYVAQQEQELDIKKNERLWLLDD-SKSWWRVRNSMNKTGFVPSNYVERKNSA   65 (72)
T ss_dssp             CEEEECSSCCCCSSTTSCCCCTTCEEEEEEC-SSSSEEEECTTSCEEEECTTSCEECCCC
T ss_pred             CeEEEECcCCCcCCCCcccCCCCCEEEEEEC-CCCEEEEEECCCCEEEEEhhHEEEcCCC
Confidence            4579999999999999999999999999997 5799999866999999999999988654

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=2.1e-13  Score=106.89  Aligned_cols=58  Identities=24%  Similarity=0.368  Sum_probs=52.1

Q ss_pred             ccceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEe--CCeeeeecCCceEEcCCC
Q psy10852        480 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       480 ~~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~--~g~~G~~P~~~v~~~~~~  540 (563)
                      ...++|+++|.  +..++||+|++||+|.|+++ ++|||+|+.  +|++||||++||+.+.+.
T Consensus        17 ~~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~-~~gW~~g~~~~~g~~G~fP~~yv~~~~~~   76 (79)
T 1x6b_A           17 LPQVEITKAFF--AKQADEVTLQQADVVLVLQQ-EDGWLYGERLRDGETGWFPEDFARFISGP   76 (79)
T ss_dssp             CCEEEESSCCC--CCSSSBCCCCTTEEEEEEEE-ETTEEEEEETTTCCEEEECGGGCEEEESS
T ss_pred             CCEEEECeeEC--CCCcCCcCCCCCCEEEEEEe-CCCEEEEEECCCCCEEEEchHHEEECCCC
Confidence            34689999998  55589999999999999999 999999999  899999999999998754

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=2.8e-13  Score=106.26  Aligned_cols=60  Identities=37%  Similarity=0.593  Sum_probs=54.1

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET  542 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~~~  542 (563)
                      .+++|+++|.  +.+++||+|++||+|.|+++.++|||.|+++|++||||++||+.+.....
T Consensus         8 ~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~   67 (79)
T 2yun_A            8 RLCKALYSFQ--ARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEELPSNAG   67 (79)
T ss_dssp             EEEEESSCBC--CSSTTBCCBCTTCEEEEEECCSSSCEEEESSSCEEEECSTTEEEESSCSS
T ss_pred             CEEEECccCC--cCCCCCcCCCCCCEEEEEEcCCCCEEEEEECCCEEEEEhHHeEECCCCCC
Confidence            3689999998  55588999999999999999889999999999999999999999976554

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=2.2e-13  Score=103.46  Aligned_cols=59  Identities=25%  Similarity=0.499  Sum_probs=54.2

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||+|+ .+|+.||||++||+++...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   65 (68)
T 1x2p_A            7 GEEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGE-RAGCCGYIPANHVGKHSGP   65 (68)
T ss_dssp             CCEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEE-CTTCCEEEESSSEECCCCS
T ss_pred             CCEEEECceECCCCcCCcCCCCCCEEEEEEcCCCCEEEEE-ECCeEEEEehHHeEECCCC
Confidence            4579999999999999999999999999999999999998 6899999999999987543

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1

Probab=99.43  E-value=2.3e-13  Score=107.22  Aligned_cols=58  Identities=16%  Similarity=0.274  Sum_probs=52.7

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~  540 (563)
                      ..++|+++|.  +.+++||+|++||+|.|+++.++|||.|+.+|+.||||++||+.+.+.
T Consensus        18 ~~~~Alydy~--a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~   75 (83)
T 1neg_A           18 ELVLALYDYQ--EKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLAAA   75 (83)
T ss_dssp             CEEEESSCBC--CSSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECCTT
T ss_pred             eEEEEccccC--CCCCCccccCCCCEEEEEEecCCCEEEEEECCeEEEEEHHHEEECCCC
Confidence            4689999998  556899999999999999998899999999999999999999998654

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.43  E-value=2.1e-13  Score=104.33  Aligned_cols=58  Identities=31%  Similarity=0.567  Sum_probs=52.1

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeC--CCCEEEEEeCCeeeeecCCceEEcCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTN--INGQWEGELNGKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~--~~~w~~g~~~g~~G~~P~~~v~~~~~~  540 (563)
                      .+++|+++|.  +.+++||+|++||+|.|+.+.  ++|||.|+++|++||||++||+.+...
T Consensus         8 ~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   67 (70)
T 2da9_A            8 DYCKVIFPYE--AQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLSGP   67 (70)
T ss_dssp             EEEEECSCCC--CSSTTBCCCCTTEEEEEEECCCSSTTEEEEECSSCEEEEEGGGEEECCCC
T ss_pred             cEEEECcCCC--CCCcCEeeEcCCCEEEEEECCCCCCCeEEEEECCcEEEechHHeEECCCC
Confidence            4789999998  555899999999999999985  799999999999999999999998653

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=99.43  E-value=1.4e-13  Score=145.22  Aligned_cols=112  Identities=20%  Similarity=0.405  Sum_probs=88.6

Q ss_pred             cCCCceeeee--CCceeeccccceeecCCCCCCCCCCCCCccCCCCCCCCCCccccccCHHHHHHHHhcCCCCCcEEEEe
Q psy10852        238 NINGQWEGEL--NGKTGHFPFTHVEFIPTNETMPFHSSMKMTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRD  315 (563)
Q Consensus       238 ~~~~W~~g~~--~g~~G~~P~~~ve~~~~~~~~p~~~~~~~~~~~~~~~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~  315 (563)
                      .+.+||+++.  .++.|++|++|+...+-..              .+.-...||||.++|.+|+.+|..  .+|+||||+
T Consensus        15 ~~~~ww~~~~~~~~~~g~~P~~~v~~~~~~~--------------~~wy~~~w~hg~i~r~~ae~lL~~--~~G~FLvR~   78 (463)
T 3cxl_A           15 YFQGVWKSYLYQLQQEAPHPRRITCTCEVEN--------------RPKYYGREFHGMISREAADQLLIV--AEGSYLIRE   78 (463)
T ss_dssp             ---CCSCCHHHHHHHHSCCCEECCCCCCCTT--------------CCTTCCTTBCCSCCHHHHHHHHTT--STTEEEEEE
T ss_pred             CCCCEEEEEecCcCccCCCCcCccCCccccC--------------CCCccccccccCCCHHHHHHHHcC--CCCeEEEec
Confidence            3568999986  4689999999996542110              111123555999999999999974  469999999


Q ss_pred             cCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeCCcccCChhhHHh-----hhhccc
Q psy10852        316 SNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLA-----FYKVHY  371 (563)
Q Consensus       316 S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~~~~f~sl~~lv~-----~y~~~~  371 (563)
                      |++.+|+|+||++.++.|+||+|.. +..     |++++..|+|+.+||+     ||....
T Consensus        79 S~~~~g~~~Lsv~~~~~v~H~~I~~-~g~-----~~~~~~~F~sl~~Lv~dGl~~~~~~~~  133 (463)
T 3cxl_A           79 SQRQPGTYTLALRFGSQTRNFRLYY-DGK-----HFVGEKRFESIHDLVTDGLITLYIETK  133 (463)
T ss_dssp             CSSSTTCEEEEEECSSSEEEEECEE-SSS-----EESSSCCBSCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEEEECCEEEEEEEec-CCe-----EEECCCccCCHHHHHHHHHHhhhccCC
Confidence            9999999999999999999999987 322     8888899999999999     987554

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*

Probab=99.43  E-value=2.3e-13  Score=105.03  Aligned_cols=57  Identities=33%  Similarity=0.751  Sum_probs=53.2

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEec-CCcEEEEcCCCeEec
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKY  441 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~-~g~~G~~P~~~v~~~  441 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||+|+.. +|+.||||++||+++
T Consensus        15 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   72 (73)
T 3h0h_A           15 VTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV   72 (73)
T ss_dssp             TCEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CEEEEECccCCCCCCCcceEeCCCEEEEEEecCCCeEEEEECCCCCEEEEEHHHeEEC
Confidence            457999999999999999999999999999999999999864 899999999999976

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.43  E-value=2.7e-13  Score=104.82  Aligned_cols=59  Identities=31%  Similarity=0.436  Sum_probs=52.4

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET  542 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~~~  542 (563)
                      .+++|+++|.  +.+++||+|++||+|.|+++ ++|||.|+++|++||||++||+.+.....
T Consensus        11 ~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~   69 (74)
T 1j3t_A           11 LKAQALCSWT--AKKDNHLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKIIPGSES   69 (74)
T ss_dssp             CEEEESSCBC--CCSTTBCCBCTTCEEEEEEE-CSSEEEEESTTCCCEEEGGGEEECCCSTT
T ss_pred             eEEEECCCCC--CCCCCccCCCCCCEEEEEec-CCCEEEEEECCcEEEEchHHeEECCCCCC
Confidence            4689999999  55588999999999999998 57999999999999999999999976544

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}

Probab=99.43  E-value=1.8e-13  Score=104.31  Aligned_cols=58  Identities=28%  Similarity=0.343  Sum_probs=52.5

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~  540 (563)
                      .+++|+++|.  +.+++||+|++||+|.|+++.+++||.|+.+|++||||++||+.+...
T Consensus         9 ~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   66 (69)
T 2dil_A            9 QEYRALYDYT--AQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEKLSGP   66 (69)
T ss_dssp             CEEECCSCBC--CSSSSSCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGCCBCCCS
T ss_pred             cEEEECccCC--ccCcCccCCCCCCEEEEEECCCCCEEEEEECCCEEEEehHHeEEcCCC
Confidence            3689999999  555889999999999999998899999999999999999999988654

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=3.3e-13  Score=104.10  Aligned_cols=59  Identities=31%  Similarity=0.709  Sum_probs=54.1

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEe---cCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSK---DEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~---~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+   .+++||+|+ .+|+.||||++||+++...
T Consensus         8 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   69 (73)
T 2dl7_A            8 VCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGE-FNGRIGVFPSVLVEELSSG   69 (73)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEECCCSSSSSCEEEE-ETTEEEEECSSSEEECCSS
T ss_pred             CEEEEECccCCcCCCCcCCCCCCCEEEEEECCCCCCCCcEEEE-ECCCEEEEChHHEEECCCC
Confidence            4579999999999999999999999999998   478999998 7999999999999988654

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1

Probab=99.42  E-value=2.5e-13  Score=102.00  Aligned_cols=57  Identities=58%  Similarity=1.069  Sum_probs=53.9

Q ss_pred             eeeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEeeCCCeeeEEecCceeecc
Q psy10852        111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS  167 (563)
Q Consensus       111 ~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~~~g~~G~fP~~yv~~~~  167 (563)
                      ..++|+|||.++.++||+|++||+|.|+++.+++||.|++.+|+.|+||++||++..
T Consensus         4 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   60 (65)
T 1b07_A            4 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYH   60 (65)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEECC
T ss_pred             eEEEECCcCCCCCCCccCCcCCCEEEEEEecCCCeEEEEECCCCEEEEChHHEeecC
Confidence            468999999999999999999999999999999999999889999999999999875

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A

Probab=99.42  E-value=2.5e-13  Score=100.44  Aligned_cols=56  Identities=29%  Similarity=0.663  Sum_probs=51.3

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEe-cCCCcEEEEe-cCCcEEEEcCCCeEec
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSK-DEEHWWTAQN-ISGEVGSIPVPYVQKY  441 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~-~~~~W~~~~~-~~g~~G~~P~~~v~~~  441 (563)
                      .+++|+|+|.++.++||+|++||+|.|+.+ .+++||.|+. .+|+.||||++||+++
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~l   60 (60)
T 2v1q_A            3 ERGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPV   60 (60)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             cEEEEeeeECCCCCCCccCCCCCEEEEEeCCCCCCCEEEEECCCCCEEEEEHHHEEEC
Confidence            479999999999999999999999999998 4889999986 3899999999999864

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}

Probab=99.42  E-value=1.6e-13  Score=99.05  Aligned_cols=52  Identities=23%  Similarity=0.536  Sum_probs=48.8

Q ss_pred             eEEEeecccCCCCCCCCCCCCCEEEEEEecC-CCcEEEEecCCcEEEEcCCCeE
Q psy10852        387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDE-EHWWTAQNISGEVGSIPVPYVQ  439 (563)
Q Consensus       387 ~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~-~~W~~~~~~~g~~G~~P~~~v~  439 (563)
                      +++|+|+|.++.++||+|++||+|.|+.+.+ ++||.|+. +|+.|+||++||+
T Consensus         2 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~-~g~~G~~P~~yv~   54 (54)
T 2a28_A            2 AMEAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGEC-DGLKGLFPTSYCK   54 (54)
T ss_dssp             EEEBCSCBCCCSTTBCCBCTTCEEEEEECCCSSSEEEEEE-TTEEEEEEGGGBC
T ss_pred             EEEECccCCcCCCCCccCCCCCEEEEEEecCCCCEEEEEE-CCeEEEeeHHHcC
Confidence            5899999999999999999999999999985 79999985 9999999999985

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}

Probab=99.42  E-value=1.7e-13  Score=104.49  Aligned_cols=58  Identities=29%  Similarity=0.566  Sum_probs=53.7

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEec---CCCcEEEEecCCcEEEEcCCCeEeccC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD---EEHWWTAQNISGEVGSIPVPYVQKYSE  443 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~---~~~W~~~~~~~g~~G~~P~~~v~~~~~  443 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.   +++||.|+ .+|+.||||++||+.+..
T Consensus         3 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~   63 (69)
T 1wyx_A            3 NVLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCS-LHGRQGIVPGNRLKILVG   63 (69)
T ss_dssp             EEEEEESSCBCCSSTTBCCBCTTCEEEEEETTGGGCTTEEEEE-ETTEEEEEEGGGEEEEEE
T ss_pred             CEEEEECccCCcCCCCccCCcCCCEEEEeECCCCCCCCcEEEE-ECCcEEEechhhEEECCC
Confidence            45799999999999999999999999999998   78999998 799999999999998854

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=2.1e-13  Score=105.63  Aligned_cols=59  Identities=24%  Similarity=0.325  Sum_probs=50.7

Q ss_pred             cceEEeecCCCCCCC-----CCCeeccCCCEEEEEE-eCCCCEEEEEeCCeeeeecCCceEEcCC
Q psy10852        481 AFARVKQVRVPNAYD-----KTALKLEIGDIIKVTK-TNINGQWEGELNGKTGHFPFTHVEFIPT  539 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~-----~~eL~~~~gd~i~v~~-~~~~~w~~g~~~g~~G~~P~~~v~~~~~  539 (563)
                      .+++|+++|.++...     ++||+|++||+|.|+. ..++|||+|+++|++||||++||+.+..
T Consensus         8 ~~~~Alydy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~   72 (75)
T 2ege_A            8 KIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLDHMSL   72 (75)
T ss_dssp             EEEEESSCBCTTTTCCCSSSCCBCCBCTTCEEEEESCCCTTCEEEEESSSCEEEEETTTEEECCC
T ss_pred             cEEEECCCCCCCccccCCCCCCcceECCCCEEEEeEccCCCCEEEEEECCcEEEEChHHeEEccC
Confidence            478999999944311     7899999999999997 4789999999999999999999998853

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A

Probab=99.42  E-value=1.8e-13  Score=103.03  Aligned_cols=56  Identities=30%  Similarity=0.530  Sum_probs=51.5

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP  538 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~  538 (563)
                      .+++|+++|.  +.+++||+|++||+|.|+++.++|||.|+.+|+.||||++||+.++
T Consensus         8 ~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~   63 (65)
T 3u23_A            8 RQCKVLFEYI--PQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELE   63 (65)
T ss_dssp             CEEEECSCBC--CSSTTBCCBCTTCEEEEEEEEETTEEEEEETTEEEEEEGGGEEECC
T ss_pred             eEEEEeeeeC--CCCcCCcCCCCCCEEEEEEecCCCEEEEEECCCEEEeehHHEEECc
Confidence            4689999998  5558899999999999999988999999999999999999999875

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=99.42  E-value=2.1e-13  Score=104.30  Aligned_cols=55  Identities=29%  Similarity=0.710  Sum_probs=51.4

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEe
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK  440 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~  440 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||+|+ .+|+.||||++||++
T Consensus        17 ~~~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~-~~g~~G~fP~~yV~~   71 (72)
T 2l0a_A           17 ARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGE-THQGIGLFPSNFVTA   71 (72)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEE-CSSCEEECTTCCEEE
T ss_pred             CeEEEECCccCCCCCCccCCCCCCEEEEEEecCCCEEEEE-ECCCEEEechhhCcc
Confidence            4579999999999999999999999999999889999998 678899999999975

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.42  E-value=2e-13  Score=111.22  Aligned_cols=62  Identities=27%  Similarity=0.502  Sum_probs=53.8

Q ss_pred             ccceEEeecCCCCCCC------CCCeeccCCCEEEEE-EeCCCCEEEEEe-CCeeeeecCCceEEcCCCCCC
Q psy10852        480 PAFARVKQVRVPNAYD------KTALKLEIGDIIKVT-KTNINGQWEGEL-NGKTGHFPFTHVEFIPTNETS  543 (563)
Q Consensus       480 ~~~~~~~~~y~~~~~~------~~eL~~~~gd~i~v~-~~~~~~w~~g~~-~g~~G~~P~~~v~~~~~~~~~  543 (563)
                      ..+++|+|+|.  +++      ++||+|++||+|.|+ ++.++|||+|++ +|++||||++||+.+......
T Consensus        17 ~~~~~Alydy~--~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~~g~~G~~Psnyv~~~~~~~~~   86 (96)
T 1wie_A           17 VHLCVARYSYN--PFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFVQDNESR   86 (96)
T ss_dssp             EEEEEESSCCC--GGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEETTCCBCBCCTTSEECCCSCCCC
T ss_pred             CcEEEECCccC--CCcccCCCCCCeeeECCCCEEEEeEecCCCCEEEEEECCCCEEEEchHHEEEcCCCCcc
Confidence            34789999998  445      789999999999999 777899999999 899999999999998765443

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=3.1e-13  Score=108.77  Aligned_cols=59  Identities=19%  Similarity=0.241  Sum_probs=52.7

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeC--CeeeeecCCceEEcCCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELN--GKTGHFPFTHVEFIPTNE  541 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~--g~~G~~P~~~v~~~~~~~  541 (563)
                      ..++|+++|.  +.+++||+|++||+|.|+++.++|||+|+++  |++||||++||+.+....
T Consensus        18 ~~~~alydy~--~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~fP~~yv~~~~~~~   78 (90)
T 2yup_A           18 GEAVAQYTFK--GDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQVSREPR   78 (90)
T ss_dssp             EEEEECSCCC--CCSSSBCCCCTTCEEEESSCCCSSEEEEECTTTCCEEEEEGGGEEEEECCC
T ss_pred             eEEEEeecCC--cCCcCcCCCCCCCEEEEEEEcCCCeEEEEECCCCCEEEEehHHeEEcCCCc
Confidence            4688888888  5568999999999999999988999999997  999999999999997643

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A

Probab=99.42  E-value=2.7e-13  Score=99.55  Aligned_cols=55  Identities=25%  Similarity=0.600  Sum_probs=50.5

Q ss_pred             eEEEeecc-cCCCCCCCCCCCCCEEEEEEecCCCcEEEEec-CCcEEEEcCCCeEec
Q psy10852        387 KVIAKYDF-DGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKY  441 (563)
Q Consensus       387 ~~~a~~~y-~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~-~g~~G~~P~~~v~~~  441 (563)
                      .++|+|+| .++.++||+|++||+|.|+.+.++|||+|+.. +|+.||||++||+++
T Consensus         2 ~~~al~d~~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~   58 (58)
T 1zuy_A            2 MFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMKPH   58 (58)
T ss_dssp             EEEESSCBCCCSCTTBCCBCTTCEEEEEEECTTSEEEEEESSCSCEEEEEGGGEECC
T ss_pred             EEEEecccCCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEecHHHEEEC
Confidence            58999999 89999999999999999999999999999865 399999999999863

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=99.42  E-value=9.4e-14  Score=105.59  Aligned_cols=58  Identities=34%  Similarity=0.556  Sum_probs=52.6

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~  540 (563)
                      .+++|+++|.  +.+++||+|++||+|.|+.+.++|||.|+++|++||||++||+.+...
T Consensus         8 ~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (68)
T 1wi7_A            8 RRCQVAFSYL--PQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGP   65 (68)
T ss_dssp             CCEEESSCBC--CSSTTBCCBCTTCEECCCEEEETTEEEECSTTCCEEEETTSEEECCSS
T ss_pred             CEEEECccCC--cCCCCCccCcCCCEEEEEEcCCCCeEEEEECCcEEEEchHHEEECCCC
Confidence            3689999999  455889999999999999998899999999999999999999998654

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=1.8e-13  Score=104.59  Aligned_cols=58  Identities=21%  Similarity=0.279  Sum_probs=52.7

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~  540 (563)
                      ..++|+++|.  +++++||+|++||+|.|+++.++|||.|+.+|++||||++||+.+...
T Consensus         9 ~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   66 (70)
T 2ega_A            9 EQYVVVSNYK--KQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQNSG   66 (70)
T ss_dssp             BCEECCSCCC--CCSSSSCCCCTTCBCEEEEECTTSEEEEECSSCEEEEEGGGCEESCCC
T ss_pred             cEEEECceEC--CCCCCcccCCCCCEEEEEEccCCCeEEEEECCCEEEEehHHcEECCCC
Confidence            3689999998  556899999999999999999999999999999999999999988654

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=5.5e-13  Score=104.54  Aligned_cols=59  Identities=32%  Similarity=0.673  Sum_probs=55.0

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||+|+ .+|+.||||++||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   65 (79)
T 2yun_A            7 GRLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGS-LNGKKGHFPAAYVEELPSN   65 (79)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSCEEEE-SSSCEEEECSTTEEEESSC
T ss_pred             CCEEEECccCCcCCCCCcCCCCCCEEEEEEcCCCCEEEEE-ECCCEEEEEhHHeEECCCC
Confidence            4579999999999999999999999999999889999998 7999999999999988664

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=2.1e-13  Score=104.62  Aligned_cols=58  Identities=21%  Similarity=0.371  Sum_probs=52.3

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeC---CCCEEEEEeCCeeeeecCCceEEcCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTN---INGQWEGELNGKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~---~~~w~~g~~~g~~G~~P~~~v~~~~~~  540 (563)
                      .+++|+++|.  +.+++||+|++||+|.|+++.   ++|||.|+++|++||||++||+.+...
T Consensus         8 ~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   68 (71)
T 2cre_A            8 LLARALYDNC--PDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQILSGP   68 (71)
T ss_dssp             EEEEESSCCC--CSSSSBCCCCSSCCEEEEESCCTTSTTEEEEESSSCCEEEETTTEEECCCS
T ss_pred             EEEEECcccC--cCCCCCCCCCCCCEEEEeEcCCCCCCCcEEEEECCCEEEEehHHEEECCCC
Confidence            4689999998  555889999999999999987   899999999999999999999998653

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}

Probab=99.42  E-value=2.8e-13  Score=104.16  Aligned_cols=59  Identities=24%  Similarity=0.214  Sum_probs=52.8

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeC--CeeeeecCCceEEcCCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELN--GKTGHFPFTHVEFIPTNE  541 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~--g~~G~~P~~~v~~~~~~~  541 (563)
                      ..++|+++|.  +.+++||+|++||+|.|+++.++|||.|+..  |+.||||++||+.+....
T Consensus         6 ~~~~Alydy~--a~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~G~~P~~yv~~~~~~~   66 (73)
T 2lcs_A            6 QRAVALYDFE--PENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQPEL   66 (73)
T ss_dssp             EEEEESSCBC--CSSTTBCCBCTTCEEEEEEEETTTEEEEECTTSSCEEEEESTTEEECCSSC
T ss_pred             CEEEECccCC--CCCCCccCCcCCCEEEEEEEcCCCEEEEEECCCCCEEEeeHHHEEECCCCC
Confidence            4689999998  5568899999999999999999999999996  899999999999986553

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A

Probab=99.42  E-value=3e-13  Score=103.75  Aligned_cols=60  Identities=17%  Similarity=0.263  Sum_probs=52.7

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEe--CCCCEEEEE-eCCeeeeecCCceEEcCCCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKT--NINGQWEGE-LNGKTGHFPFTHVEFIPTNET  542 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~--~~~~w~~g~-~~g~~G~~P~~~v~~~~~~~~  542 (563)
                      .+++|+++|.  +.+++||+|++||+|.|+.+  .++|||.|+ .+|+.||||++||+.++...+
T Consensus         7 ~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~   69 (71)
T 1u5s_A            7 HVVQTLYPFS--SVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDGPA   69 (71)
T ss_dssp             SEEEESSCCC--CCSSSBCCCCSSCCEEEEECCCTTTCEEEEEETTTEEEEEETTSEEECCCSCC
T ss_pred             EEEEEcccCC--CCCCCcccCCCCCEEEEEECCCCCCCCEEEEeCCCCEEEEeHHHEEECCCCCC
Confidence            3689999998  55588999999999999998  679999997 789999999999999976543

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=99.42  E-value=3.3e-13  Score=108.91  Aligned_cols=60  Identities=32%  Similarity=0.712  Sum_probs=55.5

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEe--cCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSK--DEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~--~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+  .+++||+|++.+|+.||||++||+.+...
T Consensus        17 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~   78 (91)
T 1wx6_A           17 LHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDG   78 (91)
T ss_dssp             CEEEEESSCCCCSSSSBCCCCTTCEEEEEECCSSCTTEEEEECTTCCEEEEEGGGEEEEEES
T ss_pred             cEEEEEeecCCcCCCCcccCCCCCEEEEEECCCCCCCcEEEEeCCCCEEEEchHHEEECCCc
Confidence            4689999999999999999999999999999  67899999877999999999999998765

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A

Probab=99.42  E-value=2.4e-13  Score=102.36  Aligned_cols=56  Identities=27%  Similarity=0.592  Sum_probs=52.6

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEec
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY  441 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~  441 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||.|+ .+|+.|+||++||+.+
T Consensus         9 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~   64 (65)
T 3ulr_B            9 GITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGV-CKGRYGLFPANYVELR   64 (65)
T ss_dssp             CSCEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEE-ETTEEEEEEGGGEEEC
T ss_pred             ceEEEEEeeECCCCcCEeeEecCCEEEEEEecCCCEEEEE-ECCcEEEEehHHeEEC
Confidence            4479999999999999999999999999999999999998 7999999999999876

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}

Probab=99.42  E-value=3.4e-13  Score=104.05  Aligned_cols=59  Identities=22%  Similarity=0.606  Sum_probs=54.2

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEec--CCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~--~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.  +++||.|+ .+|+.||||++||+.+...
T Consensus         9 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~-~~g~~G~~P~~yv~~~~~~   69 (73)
T 2k9g_A            9 KDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGE-LNGRRGVFPDNFVKLLPPD   69 (73)
T ss_dssp             CEEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSTTEEEEE-ETTEEEEEEGGGEEECCSS
T ss_pred             ccEEEECccCCCCCCCeeeECCCCEEEEEECCCCCCCEEEEE-ECCeEEEEchHHEEECCcc
Confidence            56899999999999999999999999999985  78999998 6999999999999988653

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A

Probab=99.42  E-value=2.5e-13  Score=101.96  Aligned_cols=57  Identities=23%  Similarity=0.554  Sum_probs=52.1

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEec-CCcEEEEcCCCeEec
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKY  441 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~-~g~~G~~P~~~v~~~  441 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||.|+.. +|+.||||++||+++
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~   63 (64)
T 4f14_A            6 LRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFV   63 (64)
T ss_dssp             --CEEESSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             CEEEEECeeeCCcCCCcCCCCCCCEEEEEEeCCCCeEEEEECCCCCEEEEeHHHeEEC
Confidence            347999999999999999999999999999999999999865 899999999999876

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}

Probab=99.42  E-value=1e-13  Score=108.03  Aligned_cols=73  Identities=21%  Similarity=0.408  Sum_probs=61.4

Q ss_pred             CCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCCcccccccccCCCCCCCCCCCCCCCccccccc
Q psy10852        396 GNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHL  475 (563)
Q Consensus       396 ~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (563)
                      ++.++||+|++||+|.|+.+.+++||+|+ .+|+.||||++||+.+....                              
T Consensus         2 a~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~~------------------------------   50 (77)
T 2jmc_A            2 AMGPREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKKLDSGT------------------------------   50 (77)
T ss_dssp             CSSSCCCCCCTTCEEECCCCCCSSCCCEE-ETTEEECCCGGGEEECCCSS------------------------------
T ss_pred             CcCCCccCCCCCCEEEEEEecCCCEEEEE-ECCcEEEEEeeEEEEcCCCC------------------------------
Confidence            46789999999999999999999999997 79999999999999875430                              


Q ss_pred             ccccccceEEeecCCCCCCCCCCeeccCC
Q psy10852        476 EVKLPAFARVKQVRVPNAYDKTALKLEIG  504 (563)
Q Consensus       476 ~~~~~~~~~~~~~y~~~~~~~~eL~~~~g  504 (563)
                         ....++++++|.  ++..+||+|.+-
T Consensus        51 ---~~~~~~alydy~--a~~~dElsf~~~   74 (77)
T 2jmc_A           51 ---GKELVLALYDYQ--ESGDNAPSYSPP   74 (77)
T ss_dssp             ---CCCEEEESSCCC--CSSCCCCCSCCC
T ss_pred             ---CCceEEECCCcC--CCCCCccccCCC
Confidence               013688999998  666999999863

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1

Probab=99.42  E-value=2.4e-13  Score=107.02  Aligned_cols=59  Identities=31%  Similarity=0.735  Sum_probs=54.5

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||.|+ .+|+.||||++||+++...
T Consensus        17 ~~~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~~   75 (83)
T 1neg_A           17 KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKKLAAA   75 (83)
T ss_dssp             CCEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEE-ETTEEEEEEGGGEEECCTT
T ss_pred             ceEEEEccccCCCCCCccccCCCCEEEEEEecCCCEEEEE-ECCeEEEEEHHHEEECCCC
Confidence            4479999999999999999999999999999989999996 7999999999999988654

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}

Probab=99.42  E-value=4.3e-13  Score=102.90  Aligned_cols=60  Identities=25%  Similarity=0.640  Sum_probs=54.8

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEec-CCCcEEEEec-CCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD-EEHWWTAQNI-SGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~-~~~W~~~~~~-~g~~G~~P~~~v~~~~~~  444 (563)
                      ..+++|+|+|.++.++||+|++||+|.|+.+. +++||+|++. +|+.||||++||+.+...
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   67 (71)
T 2jt4_A            6 KKRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVRDK   67 (71)
T ss_dssp             CEEEEECSCBCCSSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEEETTTS
T ss_pred             CCEEEEcccCCCCCCCcccCCCCCEEEEEECCCCCCCEEEEECCCCCeEEechHHeEECCCc
Confidence            46899999999999999999999999999987 8899999863 899999999999988654

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=4.1e-13  Score=109.60  Aligned_cols=63  Identities=22%  Similarity=0.291  Sum_probs=52.5

Q ss_pred             ccceEEeecCCCCCC------CCCCeeccCCCEEEEEEe-CCCCEEEEEeCCeeeeecCCceEEcCCCCC
Q psy10852        480 PAFARVKQVRVPNAY------DKTALKLEIGDIIKVTKT-NINGQWEGELNGKTGHFPFTHVEFIPTNET  542 (563)
Q Consensus       480 ~~~~~~~~~y~~~~~------~~~eL~~~~gd~i~v~~~-~~~~w~~g~~~g~~G~~P~~~v~~~~~~~~  542 (563)
                      ..+++|+++|.++..      ..+||+|++||+|.|+.+ .++|||+|+++|++||||++||+.+.....
T Consensus        17 ~~~~~Alydy~~~~~~~~~~~~~~eLsf~~Gd~i~vl~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~   86 (97)
T 2csq_A           17 ARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETCARLGLIPCNMVSEIQADDE   86 (97)
T ss_dssp             CEEEECSSCBCTTTTSSCHHHHTTBCCBCTTCEEEEEEEECTTCEEEEEETTEEEEEETTTSEECCCCSC
T ss_pred             ceEEEEccccCCCcccccCCCCCCccCCCCCCEEEEEEecCCCCeEEEEECCcEEEEehHHeEECCCCch
Confidence            346899999994410      478999999999999965 458899999999999999999999976544

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.42  E-value=1.7e-13  Score=103.55  Aligned_cols=54  Identities=26%  Similarity=0.462  Sum_probs=48.5

Q ss_pred             ceEEeecCCCCCCCCC-CeeccCCCEEEEEEeCC-----CCEEEEEe-CCeeeeecCCceEEc
Q psy10852        482 FARVKQVRVPNAYDKT-ALKLEIGDIIKVTKTNI-----NGQWEGEL-NGKTGHFPFTHVEFI  537 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~-eL~~~~gd~i~v~~~~~-----~~w~~g~~-~g~~G~~P~~~v~~~  537 (563)
                      +++|+++|.  +++++ ||+|++||+|.|+++.+     +|||.|+. +|++||||++||+.|
T Consensus         9 ~~~aly~y~--a~~~~dELsf~~Gd~i~Vl~~~~~~~~~~gWW~g~~~~G~~G~~PsnyV~~l   69 (69)
T 1nm7_A            9 FARALYDFV--PENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII   69 (69)
T ss_dssp             CEEECSCCC--CSSTTSCCCCCTTCEEEECCSSSSSCCSSSCEEEEETTTEEEEECGGGEEEC
T ss_pred             EEEEEeccc--CCCCCCccCCCCCCEEEEEecCCCCCCCCCeeEEEeCCCCEEEecHHHEEEC
Confidence            688999998  55588 99999999999999875     49999999 899999999999875

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A

Probab=99.42  E-value=4e-13  Score=102.38  Aligned_cols=59  Identities=29%  Similarity=0.606  Sum_probs=53.4

Q ss_pred             eeEEEeeccc-CCCCCCCCCCCCCEEEEEEecCCCcEEEEecC-CcEEEEcCCCeEeccCC
Q psy10852        386 EKVIAKYDFD-GNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       386 ~~~~a~~~y~-~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~-g~~G~~P~~~v~~~~~~  444 (563)
                      ..++|+|+|. ++.++||+|++||+|.|+.+.++|||+|+... |+.||||++||+++...
T Consensus         3 ~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~~~~   63 (69)
T 1ruw_A            3 PKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKDT   63 (69)
T ss_dssp             SEEEESSCBCCCSCTTBCCBCTTCEEEEEEECTTSEEEEEETTSSCEEEEEGGGEEECCSC
T ss_pred             cEEEEccccCCCCCCCcccCCCCCEEEEEEecCCCeEEEEECCCCCEEEEehHHeEEcCCc
Confidence            4689999996 99999999999999999999999999998653 99999999999988654

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=7.1e-13  Score=106.13  Aligned_cols=60  Identities=18%  Similarity=0.220  Sum_probs=54.4

Q ss_pred             ceeeEEEeecccC--CCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        384 TIEKVIAKYDFDG--NDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       384 ~~~~~~a~~~y~~--~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ...+++|+|+|.+  +.++||+|++||+|.|+.+.+++||+|+ .+|+.||||++||+.+...
T Consensus        15 ~~~~~~alydy~~~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~fP~~yv~~~~~~   76 (88)
T 2dbk_A           15 GPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGE-VNGRKGLFPFTHVKIFDPQ   76 (88)
T ss_dssp             CCEEEEECSCBCCCTTCSSBCCBCTTCEEEEEEECTTSCEEEE-CSSCEEEECTTTEEECCSS
T ss_pred             CCEEEEEcccccCCCCCCCcccCCCCCEEEEEEecCCCEEEEE-eCCCEEEEehHHeEECCCC
Confidence            3568999999995  4999999999999999999999999997 7999999999999998654

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=3.8e-13  Score=105.11  Aligned_cols=59  Identities=32%  Similarity=0.707  Sum_probs=54.9

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ..+++|+|+|.++.++||+|++||+|.|+.+.+++||+|+ .+|+.||||++||+.+...
T Consensus        17 ~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~~   75 (78)
T 2ed0_A           17 LEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGV-MNGVTGLFPGNYVESISGP   75 (78)
T ss_dssp             SEEEEECSCBCCSSTTBCCBCSSCEEEEEEECSSSEEEEE-ETTEEEEEETTSEEECSSS
T ss_pred             CEEEEECccCCccCcCcccccCCCEEEEEEeCCCCEEEEE-ECCcEEEeChHHEEEcCCC
Confidence            4589999999999999999999999999999999999998 7999999999999988653

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.42  E-value=6.1e-13  Score=104.60  Aligned_cols=60  Identities=13%  Similarity=0.358  Sum_probs=54.3

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecC----CcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS----GEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~----g~~G~~P~~~v~~~~~~  444 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||+|+..+    ++.||||++||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~~~~G~fP~~yv~~~~~~   70 (80)
T 1ue9_A            7 GEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGPS   70 (80)
T ss_dssp             CEEEEECSCCCCCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEECCSC
T ss_pred             CeEEEECcccCCCCCCCCCCCCCCEEEEEEecCCCcEEEEECCCCCCCcEEEEchHHeEECCCC
Confidence            4589999999999999999999999999999999999998552    59999999999988654

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}

Probab=99.42  E-value=2e-13  Score=103.42  Aligned_cols=58  Identities=21%  Similarity=0.304  Sum_probs=50.7

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEe-CCCCEEEEEeC--CeeeeecCCceEEcCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKT-NINGQWEGELN--GKTGHFPFTHVEFIPT  539 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~-~~~~w~~g~~~--g~~G~~P~~~v~~~~~  539 (563)
                      ..++|+++|.+. .+++||+|++||+|.|+.+ .++|||.|+..  |++||||++||+.+++
T Consensus         7 ~~~~al~dy~a~-~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   67 (67)
T 2kxc_A            7 QKVKTIFPHTAG-SNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKLLEE   67 (67)
T ss_dssp             CEEEESSCBCCS-SCSSBCCBCTTCEEEESSSSCBTTEEEEEESSSCCEEEEEGGGEEESCC
T ss_pred             EEEEEeecCCCC-CCCCCCcCCCCCEEEEeECCCCCCcEEEEECCCCCEEEEehHHeEECCC
Confidence            468999999830 4588999999999999996 77999999998  9999999999998853

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A

Probab=99.42  E-value=2.9e-13  Score=101.60  Aligned_cols=57  Identities=25%  Similarity=0.301  Sum_probs=50.2

Q ss_pred             ccceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEe--CCeeeeecCCceEEcC
Q psy10852        480 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIP  538 (563)
Q Consensus       480 ~~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~--~g~~G~~P~~~v~~~~  538 (563)
                      +..++|+++|.  +.+++||+|++||+|.|+++.++|||.|+.  +|++||||++||+.++
T Consensus         6 ~~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~~   64 (64)
T 4f14_A            6 LRTYRAMYDYS--AQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFVN   64 (64)
T ss_dssp             --CEEESSCBC--CCSTTBCCBCTTCEEEEEEECSSSEEEEEETTTTEEEEEEGGGEEEC-
T ss_pred             CEEEEECeeeC--CcCCCcCCCCCCCEEEEEEeCCCCeEEEEECCCCCEEEEeHHHeEECc
Confidence            34689999999  555889999999999999999999999999  8999999999999863

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.42  E-value=3.4e-13  Score=103.10  Aligned_cols=59  Identities=24%  Similarity=0.591  Sum_probs=54.0

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEec--CCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~--~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ..+++|+|+|.++.++||+|++||+|.|+.+.  +++||+|+ .+|+.||||++||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~-~~g~~G~~P~~yv~~~~~~   67 (70)
T 2da9_A            7 GDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGE-LNGRRGVFPDNFVKLLSGP   67 (70)
T ss_dssp             SEEEEECSCCCCSSTTBCCCCTTEEEEEEECCCSSTTEEEEE-CSSCEEEEEGGGEEECCCC
T ss_pred             CcEEEECcCCCCCCcCEeeEcCCCEEEEEECCCCCCCeEEEE-ECCcEEEechHHeEECCCC
Confidence            45899999999999999999999999999985  78999998 6999999999999988653

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.41  E-value=1.4e-13  Score=105.75  Aligned_cols=58  Identities=29%  Similarity=0.370  Sum_probs=51.5

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEe-CCCCEEEEEeCCeeeeecCCceEEcCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKT-NINGQWEGELNGKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~-~~~~w~~g~~~g~~G~~P~~~v~~~~~~  540 (563)
                      .+++|+++|.  +++++||+|++||+|.|+.+ .++|||.|+++|++||||++||+.+...
T Consensus        11 ~~~~alydy~--~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   69 (72)
T 1ugv_A           11 RKAKALYACK--AEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFLSGP   69 (72)
T ss_dssp             CCEEESSCBC--CCSSSBCCBCTTCEEBSCCBCSSTTEEEEESSSCEEEEEGGGEEECCSS
T ss_pred             cEEEEccccC--CcCCCEeCCcCCCEEEEEEecCCCCeEEEEECCcEEEecHHHEEECCCC
Confidence            3789999999  55588999999999999984 6789999999999999999999998654

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A

Probab=99.41  E-value=2.9e-13  Score=100.17  Aligned_cols=54  Identities=22%  Similarity=0.343  Sum_probs=49.1

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEe-CCCCEEEEEe--CCeeeeecCCceEEc
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKT-NINGQWEGEL--NGKTGHFPFTHVEFI  537 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~-~~~~w~~g~~--~g~~G~~P~~~v~~~  537 (563)
                      +++|+++|.  +.+++||+|++||+|.|+++ .++|||.|+.  +|+.||||++||+.|
T Consensus         4 ~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~l   60 (60)
T 2v1q_A            4 RGIVQYDFM--AESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPV   60 (60)
T ss_dssp             EEEECSCBC--CCSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             EEEEeeeEC--CCCCCCccCCCCCEEEEEeCCCCCCCEEEEECCCCCEEEEEHHHEEEC
Confidence            689999999  55588999999999999998 4899999999  899999999999875

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...

Probab=99.41  E-value=2.6e-13  Score=101.11  Aligned_cols=56  Identities=32%  Similarity=0.779  Sum_probs=52.5

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEec
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY  441 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~  441 (563)
                      ...++|+|+|.++.+++|+|++||+|.|+.+.+++||.|+ .+|+.||||++||+++
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~-~~g~~G~~P~~yv~~~   61 (62)
T 3ngp_A            6 KELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIE-VNGRQGFVPAAYLKKL   61 (62)
T ss_dssp             CCEEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEE-ETTEEEEEEGGGEEEC
T ss_pred             CEEEEECcCCCCCCCCCccCCCCCEEEEeEecCCCeEEEE-ECCEEEEEEHHHEEEC
Confidence            3479999999999999999999999999999999999998 6899999999999876

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.41  E-value=3.7e-13  Score=105.50  Aligned_cols=58  Identities=17%  Similarity=0.197  Sum_probs=52.3

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCC----CCEEEEEeCCeeeeecCCceEEcCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI----NGQWEGELNGKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~----~~w~~g~~~g~~G~~P~~~v~~~~~~  540 (563)
                      .+++|+++|.  +.+++||+|++||+|.|+++.+    +|||.|+.+|++||||++||+.++..
T Consensus        14 ~~~~Alydy~--~~~~~eLs~~~Gd~i~vl~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   75 (79)
T 1uhc_A           14 QVYFAVYTFK--ARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTESG   75 (79)
T ss_dssp             CCEEESSCBC--CCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEESSSCEEEEEGGGEEECCSS
T ss_pred             eEEEECccCC--CCCCCccCCCCCCEEEEEECCCCCCCCCeEEEEeCCCEEEEchHHeEECCCC
Confidence            3789999999  5568899999999999999886    89999999999999999999998654

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=7.5e-13  Score=105.93  Aligned_cols=61  Identities=28%  Similarity=0.309  Sum_probs=54.2

Q ss_pred             ccceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCCCC
Q psy10852        480 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET  542 (563)
Q Consensus       480 ~~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~~~  542 (563)
                      ...++|+++|.  +++++||+|++||+|.|+++.+++||.|+++|++||||++||+.+.....
T Consensus        17 ~~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~   77 (88)
T 2cub_A           17 NMPAYVKFNYM--AEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVTEEGDSPL   77 (88)
T ss_dssp             CEEEEESSCCC--CCSTTBCCCCTTEEEEEEEECTTSEEEEEETTEEEEEEGGGEEECCCCCS
T ss_pred             CCEEEEccccC--CCCCCCcCCCCCCEEEEEEccCCCeEEEEECCcEEEEehHHEEECCCccc
Confidence            34688999998  55689999999999999999999999999999999999999999876543

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=2.5e-13  Score=104.23  Aligned_cols=59  Identities=20%  Similarity=0.246  Sum_probs=53.5

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNE  541 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~~  541 (563)
                      ..++|+++|.  +.+++||+|++||+|.|+++.++|||.|+..|++||||++||+.+....
T Consensus         9 ~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   67 (71)
T 2dnu_A            9 EKYVTVQPYT--SQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKKAKDSG   67 (71)
T ss_dssp             EEEECSSCBC--CSSTTBCCBCTTCEEEECCCCSSSEEEEEETTEEEEEEGGGCEECCCCC
T ss_pred             CEEEECCccC--CCCCCCCcCCCCCEEEEeECCCCCeEEEEECCcEEEEEHHHeEEccCCC
Confidence            3688999998  5568999999999999999988999999999999999999999997654

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens}

Probab=99.41  E-value=9.3e-14  Score=108.16  Aligned_cols=59  Identities=25%  Similarity=0.574  Sum_probs=54.6

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||.|+ .+|+.||||++||+.+...
T Consensus        18 ~~~~~Alydy~a~~~~eLsf~~Gd~I~Vl~~~~~gWw~g~-~~g~~G~fP~nyV~~~~~~   76 (79)
T 1z9q_A           18 APRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGT-VRGATGIFPLSFVKILKDF   76 (79)
T ss_dssp             CCCEEESSCCCCSSTTBCCCCTTCCBCCCEESSSSEEEEE-ETTEEEEEEGGGEEESSCC
T ss_pred             ceEEEEcCccCCCCCCcccccCCCEEEEeEecCCCEEEEE-ECCeEEEecHHHEEECCCC
Confidence            4479999999999999999999999999999999999998 6899999999999988654

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=4.1e-13  Score=104.04  Aligned_cols=58  Identities=22%  Similarity=0.474  Sum_probs=52.5

Q ss_pred             eeeEEEeecccCCC-------CCCCCCCCCCEEEEEE-ecCCCcEEEEecCCcEEEEcCCCeEeccC
Q psy10852        385 IEKVIAKYDFDGND-------PDDLPFKKNDILIVVS-KDEEHWWTAQNISGEVGSIPVPYVQKYSE  443 (563)
Q Consensus       385 ~~~~~a~~~y~~~~-------~~el~~~~g~~v~v~~-~~~~~W~~~~~~~g~~G~~P~~~v~~~~~  443 (563)
                      ...++|+|+|.++.       ++||+|++||+|.|+. ..+++||+|+ .+|+.||||++||+.+..
T Consensus         7 ~~~~~Alydy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~-~~g~~G~fP~~yv~~~~~   72 (75)
T 2ege_A            7 GKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGE-LGGHRGLVPAHLLDHMSL   72 (75)
T ss_dssp             SEEEEESSCBCTTTTCCCSSSCCBCCBCTTCEEEEESCCCTTCEEEEE-SSSCEEEEETTTEEECCC
T ss_pred             CcEEEECCCCCCCccccCCCCCCcceECCCCEEEEeEccCCCCEEEEE-ECCcEEEEChHHeEEccC
Confidence            45799999999999       9999999999999997 4788999998 599999999999998743

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=4.1e-13  Score=104.03  Aligned_cols=59  Identities=20%  Similarity=0.498  Sum_probs=53.4

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEec---CCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI---SGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~---~g~~G~~P~~~v~~~~~~  444 (563)
                      ...++|+|+|.++ ++||+|++||+|.|+.+.+++||+|+..   +|+.||||++||+++...
T Consensus        10 ~~~~~alydy~~~-~~eLs~~~Gd~i~vl~~~~~gWw~g~~~~~~~g~~G~~P~~yv~~~~~~   71 (75)
T 2egc_A           10 KDVYVSIADYEGD-EETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKKNSG   71 (75)
T ss_dssp             CEEEEECSCBCCC-SSSCCBCTTCEEEECEECTTSEEEEEECCSSSCEEEEEEGGGEEECCSC
T ss_pred             CeEEEECCCcCCC-CCcCCCCCCCEEEEEEcCCCCeEEEEeCCCCCCcEEEEehHHCEECCCC
Confidence            4579999999999 9999999999999999999999999865   468999999999988654

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}

Probab=99.41  E-value=2e-13  Score=98.58  Aligned_cols=52  Identities=25%  Similarity=0.329  Sum_probs=47.2

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEeCC-CCEEEEEeCCeeeeecCCceE
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI-NGQWEGELNGKTGHFPFTHVE  535 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~-~~w~~g~~~g~~G~~P~~~v~  535 (563)
                      .++|+++|.  +.+++||+|++||+|.|+++.+ +|||.|+.+|+.||||++||+
T Consensus         2 ~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~g~~G~~P~~yv~   54 (54)
T 2a28_A            2 AMEAIYAYE--AQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYCK   54 (54)
T ss_dssp             EEEBCSCBC--CCSTTBCCBCTTCEEEEEECCCSSSEEEEEETTEEEEEEGGGBC
T ss_pred             EEEECccCC--cCCCCCccCCCCCEEEEEEecCCCCEEEEEECCeEEEeeHHHcC
Confidence            478899998  5558899999999999999886 799999999999999999985

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}

Probab=99.41  E-value=3e-13  Score=103.72  Aligned_cols=58  Identities=21%  Similarity=0.163  Sum_probs=51.2

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEE--eCCeeeeecCCceEEcCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~--~~g~~G~~P~~~v~~~~~~  540 (563)
                      .+++|+++|.  +..++||+|++||+|.|+.+.++|||.|+  .+|++||||++||+.+...
T Consensus         7 ~~~~al~~y~--~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~fP~~yv~~~~~~   66 (71)
T 2fpf_A            7 QTHRAIFRFV--PRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVTKE   66 (71)
T ss_dssp             CCEEECSCBC--CSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTTEEEEEEGGGEEECC--
T ss_pred             eEEEECeeEC--ccCCCcccCcCCcEEEEeEecCCCEEEEEECCCCCEEEeehHHEEECCCC
Confidence            3689999999  45588999999999999999999999999  6899999999999998654

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.41  E-value=2.6e-13  Score=108.42  Aligned_cols=56  Identities=34%  Similarity=0.654  Sum_probs=51.8

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEec-----CCCcEEEEecCCcEEEEcCCCeEe
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD-----EEHWWTAQNISGEVGSIPVPYVQK  440 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~-----~~~W~~~~~~~g~~G~~P~~~v~~  440 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.     +++||+|+..+|+.||||++||++
T Consensus        29 ~~~~~Alydy~a~~~~ELsf~~GD~I~Vl~~~~~~~~~~gWw~g~~~~g~~G~fP~nyV~p   89 (89)
T 2rf0_A           29 GPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYVAP   89 (89)
T ss_dssp             CCEEEECSCBCCSSTTBCCBCTTCEEEEEECCHHHHSSTTEEEEECTTCCEEEEEGGGEEC
T ss_pred             CcEEEECCccCCCCCCccccCCCCEEEEEeccCCcccCCCEEEEEECCCCEEEEcHHHCcC
Confidence            45899999999999999999999999999985     789999995599999999999975

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=6.6e-13  Score=104.03  Aligned_cols=59  Identities=25%  Similarity=0.596  Sum_probs=54.7

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||+|+ .+|+.||||++||+.+...
T Consensus        17 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   75 (79)
T 1x69_A           17 GITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGV-CKGRYGLFPANYVELRQSG   75 (79)
T ss_dssp             CCCEEESSCCCCSSSSBCCCCTTCEEEEEEECSSSEEEEE-ETTEEEEEETTSEEECCCC
T ss_pred             CeEEEECccCCCCCCCCcCcCCCCEEEEeEecCCCeEEEE-ECCcEEEechHHEEECCCC
Confidence            4579999999999999999999999999999999999998 7999999999999988654

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.41  E-value=2e-13  Score=104.09  Aligned_cols=60  Identities=27%  Similarity=0.458  Sum_probs=53.3

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||+|+..+++.||||++||+++...
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~~G~~P~~yv~~~~~~   66 (69)
T 2eqi_A            7 GRTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDISGP   66 (69)
T ss_dssp             CCEEEESSCBCCCSSSCCCBCTTCEEESCCCCSSSCEEEEETTEEEEEECGGGEEECCSC
T ss_pred             CcEEEECeeECCCCcCccCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEchHHcEECccC
Confidence            357999999999999999999999999999989999999865555599999999988653

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.41  E-value=4.8e-13  Score=104.60  Aligned_cols=59  Identities=34%  Similarity=0.675  Sum_probs=54.9

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ..+++|+|+|.++.++||+|++||+|.|+.+.+++||.|+ .+|+.||||++||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   65 (78)
T 2yuo_A            7 GRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGE-LNGLRGWFPAKFVEVLDER   65 (78)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEE-ETTEEEEEEGGGEEEECCC
T ss_pred             ceEEEECccCCCCCCCCccCCCCCEEEEEEecCCCEEEEE-ECCCEEEEehHHEEECCCc
Confidence            4579999999999999999999999999999999999998 6899999999999988654

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}

Probab=99.41  E-value=2.6e-13  Score=104.61  Aligned_cols=56  Identities=20%  Similarity=0.294  Sum_probs=51.4

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCC
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~  540 (563)
                      .|+|+++|.  + +++||+|++||+|.|+++.++|||.|+.+|++||||++||+.++..
T Consensus         2 ~a~alydy~--~-~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   57 (73)
T 2kxd_A            2 GAPPLPPYS--A-GGREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSG   57 (73)
T ss_dssp             CCCCCCSSC--C-CSCCCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECCSS
T ss_pred             eEEEeeeeC--C-CCCEeeEcCCCEEEEEEecCCCEEEEEECCCEEEEehHHeEEcCCC
Confidence            378999998  5 6899999999999999999999999999999999999999998654

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=99.41  E-value=5.1e-13  Score=107.82  Aligned_cols=60  Identities=17%  Similarity=0.263  Sum_probs=53.1

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEe--CCCCEEEEE-eCCeeeeecCCceEEcCCCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKT--NINGQWEGE-LNGKTGHFPFTHVEFIPTNET  542 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~--~~~~w~~g~-~~g~~G~~P~~~v~~~~~~~~  542 (563)
                      .+++|+++|.  +..++||+|++||+|.|+++  .++|||+|+ .+|++||||++||+.+.....
T Consensus        18 ~~~~alydy~--~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~   80 (91)
T 1wx6_A           18 HVVQTLYPFS--SVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDGPA   80 (91)
T ss_dssp             EEEEESSCCC--CSSSSBCCCCTTCEEEEEECCSSCTTEEEEECTTCCEEEEEGGGEEEEEESSS
T ss_pred             EEEEEeecCC--cCCCCcccCCCCCEEEEEECCCCCCCcEEEEeCCCCEEEEchHHEEECCCcCC
Confidence            4689999998  55588999999999999998  678999998 789999999999999976554

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=2.7e-13  Score=104.54  Aligned_cols=59  Identities=24%  Similarity=0.619  Sum_probs=53.4

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEec--CCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~--~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ..+++|+|+|.++.++||+|++||+|.|+.+.  +++||+|+ .+|+.||||++||+++...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   67 (73)
T 2dm1_A            7 GGTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGE-TNGRIGWFPSTYVEEEGIQ   67 (73)
T ss_dssp             SSEEEESSCBCCCSTTBCCBCTTCEEECCBSSSSSSSCEEEE-ETTEEEEECSSSEEECCCC
T ss_pred             CCEEEECccCCcCCCCcCCCCCCCEEEEEEecCCCCCeEEEE-ECCeEEEeehHHEEEcCCC
Confidence            45799999999999999999999999999987  45999998 6999999999999988653

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=2.8e-13  Score=105.31  Aligned_cols=59  Identities=22%  Similarity=0.598  Sum_probs=54.5

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||+|+ .+|+.||||++||+.+...
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   68 (76)
T 2epd_A           10 VVEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGE-HNGMRGLIPHKYITLPAGT   68 (76)
T ss_dssp             CEEEEESSCEECSSTTBCEECTTCEEEEEEEEETTEEEEE-ETTEEEEEESSSEECCSSC
T ss_pred             CEEEEECcCCCCCCCCccCCCCCCEEEEEEeCCCCEEEEE-ECCcEEEEehHHEEEcCCC
Confidence            3579999999999999999999999999999889999998 4999999999999988654

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=99.41  E-value=2.7e-13  Score=103.66  Aligned_cols=54  Identities=26%  Similarity=0.336  Sum_probs=49.4

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEE
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEF  536 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~  536 (563)
                      .+++|+++|.  +.+++||+|++||+|.|+++.++|||.|+.+|++||||++||+.
T Consensus        18 ~~~~Alydy~--a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~~~g~~G~fP~~yV~~   71 (72)
T 2l0a_A           18 RKVRAIYDFE--AAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFVTA   71 (72)
T ss_dssp             EEEEESSCBC--CSSTTBCCBCTTCEEEEEEEEETTEEEEECSSCEEECTTCCEEE
T ss_pred             eEEEECCccC--CCCCCccCCCCCCEEEEEEecCCCEEEEEECCCEEEechhhCcc
Confidence            4689999998  55588999999999999999889999999999999999999974

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1

Probab=99.41  E-value=2.9e-13  Score=100.77  Aligned_cols=56  Identities=25%  Similarity=0.640  Sum_probs=51.5

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEec
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY  441 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~  441 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||.|+ ..|+.||||++||++.
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~   60 (62)
T 1uj0_A            5 ARRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGE-NHRGTGLFPSNFVTTD   60 (62)
T ss_dssp             CEEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEE-ETTEEEEEEGGGEESC
T ss_pred             CeEEEECccCCCCCcCCcCCCCCCEEEEEEeCCCCEEEEE-ECCCEEEechhHEEEe
Confidence            4579999999999999999999999999999899999998 5788999999999753

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D

Probab=99.41  E-value=2.2e-13  Score=100.79  Aligned_cols=56  Identities=34%  Similarity=0.666  Sum_probs=49.8

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEecC-CCcEEEEecCCcEEEEcCCCeEec
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE-EHWWTAQNISGEVGSIPVPYVQKY  441 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~-~~W~~~~~~~g~~G~~P~~~v~~~  441 (563)
                      .+++|+|+|.++.++||+|++||+|.|+.+.+ ++||.|+..+|+.||||++||+++
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~~g~~G~~P~~yv~~l   60 (60)
T 2x3w_D            4 VRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEAI   60 (60)
T ss_dssp             CEEEECSCBCCSSSSBCCBCTTCEEEECSCCCSSSEEEEECSSCCEEEEEGGGEEC-
T ss_pred             CEEEECcccCccCCCcccCCCCCEEEEEEccCCCCceEEEeCCCCEEEecHHHEEEC
Confidence            46999999999999999999999999999864 599999855599999999999864

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A

Probab=99.41  E-value=3.2e-13  Score=101.72  Aligned_cols=57  Identities=32%  Similarity=0.666  Sum_probs=51.8

Q ss_pred             eeeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEeeCCCeeeEEecCceeeccc
Q psy10852        111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  168 (563)
Q Consensus       111 ~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~~~g~~G~fP~~yv~~~~~  168 (563)
                      ..++|+|||.++.++||+|++||+|.|+++ +++||.+++.+|++|+||+|||+..++
T Consensus         5 ~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~-~~~Ww~~~~~~g~~G~~Psnyv~~~~~   61 (67)
T 2b86_A            5 VIVIAKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNAANRTGYVPSNYVERKLE   61 (67)
T ss_dssp             EEEEESSCBCCSSTTSCCBCTTCEEEEEEC-SSSSCEEECTTSCEEECCCCSEEEC--
T ss_pred             eEEEEeeeECCCCCCccccCCCCEEEEEec-CCCeEEEEeCCCCEEEeChHHEeEcCC
Confidence            468999999999999999999999999998 479999998899999999999998864

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=3.3e-13  Score=103.55  Aligned_cols=59  Identities=29%  Similarity=0.467  Sum_probs=54.5

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEec---CCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD---EEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~---~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.   +++||.|+ .+|+.||||++||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   68 (71)
T 2cre_A            7 GLLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCL-LHGRQGLAPANRLQILSGP   68 (71)
T ss_dssp             CEEEEESSCCCCSSSSBCCCCSSCCEEEEESCCTTSTTEEEEE-SSSCCEEEETTTEEECCCS
T ss_pred             cEEEEECcccCcCCCCCCCCCCCCEEEEeEcCCCCCCCcEEEE-ECCCEEEEehHHEEECCCC
Confidence            45799999999999999999999999999997   88999998 7999999999999988654

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=99.41  E-value=1.4e-13  Score=104.64  Aligned_cols=59  Identities=25%  Similarity=0.566  Sum_probs=54.5

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ..+++|+|+|.++.++||+|++||+|.|+.+.+++||.|+ .+|+.||||++||+++...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   65 (68)
T 1wi7_A            7 GRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGV-LNGKTGMFPSNFIKELSGP   65 (68)
T ss_dssp             CCCEEESSCBCCSSTTBCCBCTTCEECCCEEEETTEEEEC-STTCCEEEETTSEEECCSS
T ss_pred             CCEEEECccCCcCCCCCccCcCCCEEEEEEcCCCCeEEEE-ECCcEEEEchHHEEECCCC
Confidence            3479999999999999999999999999999889999998 7999999999999988654

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A

Probab=99.41  E-value=3.2e-13  Score=100.22  Aligned_cols=56  Identities=29%  Similarity=0.594  Sum_probs=51.0

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEE-EEcCCCeEecc
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVG-SIPVPYVQKYS  442 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G-~~P~~~v~~~~  442 (563)
                      ..++|+|+|.++.++||+|++||+|.|+.+.+++||.|+. +|+.| |||++||+++.
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~-~g~~gG~~P~~yv~~~~   60 (61)
T 1y0m_A            4 SAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDY-GGKKQLWFPSNYVEEMI   60 (61)
T ss_dssp             CCEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEE-TTEEEEEEEGGGEEECC
T ss_pred             CEEEECcCCCcCCCCCcCCcCCCEEEEEEecCCCEEEEEE-CCeEEEEEChHHcEECC
Confidence            4699999999999999999999999999998899999984 67775 99999999874

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1

Probab=99.41  E-value=3e-13  Score=100.65  Aligned_cols=54  Identities=26%  Similarity=0.343  Sum_probs=49.4

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEE
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEF  536 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~  536 (563)
                      ..++|+++|.  +.+++||+|++||+|.|+++.++|||.|+..|+.||||++||+.
T Consensus         6 ~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~   59 (62)
T 1uj0_A            6 RRVRALYDFE--AVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTT   59 (62)
T ss_dssp             EEEEESSCBC--CCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEES
T ss_pred             eEEEECccCC--CCCcCCcCCCCCCEEEEEEeCCCCEEEEEECCCEEEechhHEEE
Confidence            3689999998  55588999999999999999889999999999999999999975

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*

Probab=99.40  E-value=3.9e-13  Score=103.72  Aligned_cols=56  Identities=18%  Similarity=0.256  Sum_probs=51.0

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEe--CCeeeeecCCceEEcC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIP  538 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~--~g~~G~~P~~~v~~~~  538 (563)
                      .+++|+++|.  +..++||+|++||+|.|+.+.+++||.|+.  +|++||||++||+.++
T Consensus        16 ~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   73 (73)
T 3h0h_A           16 TLFVALYDYE--AITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD   73 (73)
T ss_dssp             CEEEESSCBC--CSSTTBCCBCTTCEEEEEECSSSSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             EEEEECccCC--CCCCCcceEeCCCEEEEEEecCCCeEEEEECCCCCEEEEEHHHeEECC
Confidence            4789999998  555889999999999999999999999998  8999999999999874

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A

Probab=99.40  E-value=2.8e-13  Score=105.35  Aligned_cols=60  Identities=25%  Similarity=0.662  Sum_probs=53.9

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecC--CcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS--GEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~--g~~G~~P~~~v~~~~~~  444 (563)
                      ..+++|+|+|.++.++||+|++||+|.|+.+.+++||+|+..+  |+.||||++||+.+...
T Consensus        10 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~G~~P~~yv~~~~~~   71 (76)
T 2ed1_A           10 VRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHILSDS   71 (76)
T ss_dssp             CEEEEESSCCCCSSSSBCCCCSSCEEEESSCCSSSEEEEEETTCTTCEEEEEGGGEEECCCC
T ss_pred             CeEEEECccCCCCCcCCcCcCCCCEEEEEEecCCCEEEEEECCCCCCEEEEehHHeEECCCC
Confidence            4589999999999999999999999999998899999998432  49999999999998654

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=2.1e-13  Score=104.56  Aligned_cols=59  Identities=29%  Similarity=0.393  Sum_probs=54.1

Q ss_pred             eeeEEEeecccC-CCCCCCCCCCCCEEEEEEecCCCcEEEEe-cCCcEEEEcCCCeEeccC
Q psy10852        385 IEKVIAKYDFDG-NDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKYSE  443 (563)
Q Consensus       385 ~~~~~a~~~y~~-~~~~el~~~~g~~v~v~~~~~~~W~~~~~-~~g~~G~~P~~~v~~~~~  443 (563)
                      ..+++|+|+|.+ +.++||+|++||+|.|+.+.+++||.|++ .+|+.|+||++||+++..
T Consensus         7 ~~~~~Alydy~~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~~~   67 (71)
T 2gqi_A            7 GRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVSG   67 (71)
T ss_dssp             CCCEEESSCCCCCTTSSCCCCCTTCBCCCCEECSSSCEEEECTTTCCEEEECTTSEEECCC
T ss_pred             CCEEEECcccCCCCCCCCCCCCCCCEEEEEEecCCCEEEEEECCCCCEEEeeHHHEEECCC
Confidence            457999999999 99999999999999999999999999984 589999999999998854

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A

Probab=99.40  E-value=2.6e-13  Score=102.20  Aligned_cols=55  Identities=15%  Similarity=0.257  Sum_probs=50.0

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeC--------CeeeeecCCceEEcC
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELN--------GKTGHFPFTHVEFIP  538 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~--------g~~G~~P~~~v~~~~  538 (563)
                      +++|+++|.  +.+++||+|++||+|.|+++.++|||.|+..        |++||||++||+.++
T Consensus         3 ~~~alydy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~~g~~~g~~G~~P~~yv~~l~   65 (65)
T 2oaw_A            3 LVLALYDYQ--EKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKLD   65 (65)
T ss_dssp             EEEECSCBC--CSSTTBCCBCTTCEEEEEECCSSSEEEEEEEEEETTEEEEEEEEEEGGGEEECC
T ss_pred             EEEEcccCC--ccCCCCCCCCCCCEEEEEEcCCCCEEEEEEccccCCCcCCcEEEEchHHeEEcC
Confidence            688999998  5558899999999999999989999999987        899999999999864

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=3.1e-13  Score=103.33  Aligned_cols=59  Identities=22%  Similarity=0.597  Sum_probs=54.4

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||+|+ .+|+.||||++||+++...
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   66 (70)
T 2ega_A            8 LEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVS-TSEEQGWVPATYLEAQNSG   66 (70)
T ss_dssp             CBCEECCSCCCCCSSSSCCCCTTCBCEEEEECTTSEEEEE-CSSCEEEEEGGGCEESCCC
T ss_pred             CcEEEECceECCCCCCcccCCCCCEEEEEEccCCCeEEEE-ECCCEEEEehHHcEECCCC
Confidence            3479999999999999999999999999999999999998 6799999999999988654

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.40  E-value=2e-13  Score=103.96  Aligned_cols=58  Identities=33%  Similarity=0.697  Sum_probs=53.4

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+ +++||+|+ .+|+.||||++||+++...
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   65 (69)
T 1uhf_A            8 GEEYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGS-IGDRSGIFPSNYVKPKDSG   65 (69)
T ss_dssp             SEEEECSSCBCCSSSSBCCBCTTCEEEECEE-ETTEEEEC-STTCCEEECGGGCEECCCC
T ss_pred             CCEEEEeeeECCCCcCccCCCCCCEEEEEEe-CCCEEEEE-eCCcEEEEchHHeEECCCC
Confidence            4579999999999999999999999999998 78999997 7899999999999988654

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A

Probab=99.40  E-value=3.5e-13  Score=105.37  Aligned_cols=60  Identities=30%  Similarity=0.615  Sum_probs=53.3

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEe-cCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~-~~g~~G~~P~~~v~~~~~~  444 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||.|+. .+|+.||||++||+++...
T Consensus         5 ~~~~~Alydy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   65 (79)
T 3cqt_A            5 STLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVDRL   65 (79)
T ss_dssp             CCCEEESSCBCCCSTTBCCBCTTCEEEEEECTTSSEEEEEETTTCCEEEEEGGGEEEC---
T ss_pred             CcEEEECccCCCCCcCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEeehHHeEECCcc
Confidence            34799999999999999999999999999999999999986 3899999999999998654

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}

Probab=99.40  E-value=3.3e-13  Score=104.02  Aligned_cols=59  Identities=25%  Similarity=0.574  Sum_probs=54.5

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||.|+ .+|+.|+||++||+.+.+.
T Consensus        13 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~-~~g~~G~~P~~yv~~~~~~   71 (73)
T 3c0c_A           13 QPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGM-LHGQSGFFPLSYVQVLVPL   71 (73)
T ss_dssp             SCEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEE-ETTEEEEEEGGGEEEEECC
T ss_pred             CeEEEECccCCCCCCCCccCcCCCEEEEEEecCCCEEEEE-ECCCEEEeChHHEEECCCC
Confidence            4579999999999999999999999999999999999998 5999999999999987653

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.40  E-value=4.4e-13  Score=105.06  Aligned_cols=59  Identities=27%  Similarity=0.668  Sum_probs=54.2

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecC----CCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE----EHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~----~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+    ++||+|+ .+|+.||||++||+++...
T Consensus        13 ~~~~~Alydy~~~~~~eLs~~~Gd~i~vl~~~~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   75 (79)
T 1uhc_A           13 NQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAE-VNGKKGYVPSNYIRKTESG   75 (79)
T ss_dssp             SCCEEESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEE-SSSCEEEEEGGGEEECCSS
T ss_pred             CeEEEECccCCCCCCCccCCCCCCEEEEEECCCCCCCCCeEEEE-eCCCEEEEchHHeEECCCC
Confidence            447999999999999999999999999999886    8999997 8999999999999988654

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.40  E-value=2.3e-13  Score=99.86  Aligned_cols=53  Identities=25%  Similarity=0.540  Sum_probs=49.7

Q ss_pred             eEEEeecccCCCCCCCCCCCCCEEEEEEecC-CCcEEEEec-CCcEEEEcCCCeE
Q psy10852        387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDE-EHWWTAQNI-SGEVGSIPVPYVQ  439 (563)
Q Consensus       387 ~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~-~~W~~~~~~-~g~~G~~P~~~v~  439 (563)
                      +++|+|+|.++.++||+|++||+|.|+.+.+ ++||.|+.. +|+.||||++||+
T Consensus         3 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~~~g~~G~~P~~yv~   57 (58)
T 1zuu_A            3 ENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR   57 (58)
T ss_dssp             CCEECSCBCCCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEE
T ss_pred             EEEEeeeECCcCCCcccCCCCCEEEEeEcCCCCCCEEEEECCCCCEEEEEHHHEE
Confidence            5899999999999999999999999999986 799999865 8999999999997

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.40  E-value=5.4e-13  Score=104.08  Aligned_cols=59  Identities=25%  Similarity=0.531  Sum_probs=54.5

Q ss_pred             eeEEEeecccCC-CCCCCCCCCCCEEEEEEec-CCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        386 EKVIAKYDFDGN-DPDDLPFKKNDILIVVSKD-EEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       386 ~~~~a~~~y~~~-~~~el~~~~g~~v~v~~~~-~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      .+++|+|+|.++ .++||+|++||+|.|+.+. +++||+|++.+|+.||||++||+.+...
T Consensus        10 ~~~~al~dy~~~~~~~eLs~~~Gd~i~v~~~~~~~gW~~g~~~~g~~G~~P~~yv~~~~~~   70 (77)
T 2enm_A           10 TKARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYVEILPND   70 (77)
T ss_dssp             EEEEESSCCCCCTTSSBCCCCTTCEEEEEESCCSSSEEEEECTTCCEEEEETTTEEEECCC
T ss_pred             cEEEECccCCCCCCCCeecCCCCCEEEEeEccCCCCeEEEEECCCCEEEeehHHeEECCCC
Confidence            479999999999 9999999999999999986 7899999978999999999999988654

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.40  E-value=3.8e-13  Score=105.11  Aligned_cols=61  Identities=16%  Similarity=0.220  Sum_probs=53.5

Q ss_pred             cccceEEeecCCCCCCCCCCeeccCCCEEEEEEeCC-CCEEEEEeC-CeeeeecCCceEEcCCCC
Q psy10852        479 LPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI-NGQWEGELN-GKTGHFPFTHVEFIPTNE  541 (563)
Q Consensus       479 ~~~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~-~~w~~g~~~-g~~G~~P~~~v~~~~~~~  541 (563)
                      .+..++|+++|.  +.+++||+|++||+|.|+++.+ +|||.|+.. |++||||++||+.+....
T Consensus        12 ~~~~~~alydy~--~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~   74 (78)
T 2dl5_A           12 YPLTCKVVYSYK--ASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYLQFPTSSG   74 (78)
T ss_dssp             SSEEEEECSCBC--CCSTTBCCBCSSEEEEEEECCSSSSEEEEECTTCCEEEEETTTSCCSCCCC
T ss_pred             CCcEEEEceeEC--CCCCCCCCCCCCCEEEEEeccCCCCcEEEEeCCCCEEEEEhHHEEECCCCC
Confidence            445799999999  5558899999999999999985 899999997 999999999999886543

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.40  E-value=7.2e-13  Score=103.35  Aligned_cols=61  Identities=31%  Similarity=0.404  Sum_probs=53.5

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeC-CCCEEEEE-eCCeeeeecCCceEEcCCCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTN-INGQWEGE-LNGKTGHFPFTHVEFIPTNET  542 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~-~~~w~~g~-~~g~~G~~P~~~v~~~~~~~~  542 (563)
                      .+++|+++|.++ .+++||+|++||+|.|+.+. ++|||.|+ .+|++||||++||+.+.....
T Consensus        10 ~~~~al~dy~~~-~~~~eLs~~~Gd~i~v~~~~~~~gW~~g~~~~g~~G~~P~~yv~~~~~~~~   72 (77)
T 2enm_A           10 TKARVMYDFAAE-PGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYVEILPNDGK   72 (77)
T ss_dssp             EEEEESSCCCCC-TTSSBCCCCTTCEEEEEESCCSSSEEEEECTTCCEEEEETTTEEEECCCCC
T ss_pred             cEEEECccCCCC-CCCCeecCCCCCEEEEeEccCCCCeEEEEECCCCEEEeehHHeEECCCCCC
Confidence            478999999954 16889999999999999985 79999999 889999999999999976554

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}

Probab=99.39  E-value=4.2e-13  Score=102.63  Aligned_cols=60  Identities=23%  Similarity=0.554  Sum_probs=54.1

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecC-CcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~-g~~G~~P~~~v~~~~~~  444 (563)
                      ..+++|+|+|.++.++||+|++||+|.|+.+.+++||+|+..+ |+.||||++||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   67 (70)
T 2ecz_A            7 GGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVISGP   67 (70)
T ss_dssp             CBCEEESSCCCCCSTTBCCCCTTCBCEEEEEEETTEEEEEETTTTEEEEECTTTEEESSSC
T ss_pred             CCEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCeEEEEECCCCCEEEEchHHEEECCCC
Confidence            4579999999999999999999999999999889999998653 69999999999988653

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A

Probab=99.39  E-value=4.1e-13  Score=105.00  Aligned_cols=59  Identities=15%  Similarity=0.232  Sum_probs=50.9

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEe--CCeeeeecCCceEEcCCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIPTNE  541 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~--~g~~G~~P~~~v~~~~~~~  541 (563)
                      .+++|+++|.  +++++||+|++||+|.|+++.++|||.|+.  +|++||||++||+.++..+
T Consensus         6 ~~~~Alydy~--~~~~~eLs~~~Gd~i~vl~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~~   66 (79)
T 3cqt_A            6 TLFEALYDYE--ARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVDRLD   66 (79)
T ss_dssp             CCEEESSCBC--CCSTTBCCBCTTCEEEEEECTTSSEEEEEETTTCCEEEEEGGGEEEC----
T ss_pred             cEEEECccCC--CCCcCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEeehHHeEECCccc
Confidence            3689999998  555889999999999999998999999999  8999999999999987543

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A

Probab=99.39  E-value=3e-13  Score=101.87  Aligned_cols=56  Identities=32%  Similarity=0.728  Sum_probs=51.2

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEec---C----CcEEEEcCCCeEec
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI---S----GEVGSIPVPYVQKY  441 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~---~----g~~G~~P~~~v~~~  441 (563)
                      ..++|+|+|.++.++||+|++||+|.|+.+.+++||.|+..   +    |+.||||++||+++
T Consensus         2 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~~g~~~g~~G~~P~~yv~~l   64 (65)
T 2oaw_A            2 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKL   64 (65)
T ss_dssp             EEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEEEEEETTEEEEEEEEEEGGGEEEC
T ss_pred             cEEEEcccCCccCCCCCCCCCCCEEEEEEcCCCCEEEEEEccccCCCcCCcEEEEchHHeEEc
Confidence            46899999999999999999999999999999999999854   1    89999999999876

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.39  E-value=3.2e-13  Score=103.89  Aligned_cols=59  Identities=19%  Similarity=0.290  Sum_probs=51.6

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEe-CCCCEEEEEeC--CeeeeecCCceEEcCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKT-NINGQWEGELN--GKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~-~~~~w~~g~~~--g~~G~~P~~~v~~~~~~  540 (563)
                      ..++|+++|.+. .+++||+|++||+|.|+.+ .++|||+|++.  |++||||++||+.+...
T Consensus         8 ~~~~al~dy~a~-~~~~eLs~~~Gd~i~v~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~~~~   69 (72)
T 1spk_A            8 QKVKTIFPHTAG-NNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLSGP   69 (72)
T ss_dssp             CEEECSSCBCCS-SCSSBCCBCTTCEEEECCSSCBTTEEEEEETTTCCEEEEEGGGCEECSSC
T ss_pred             eEEEEeeeeCCC-CCCCCCcCCCCCEEEEeEccCCCCcEEEEECCCCCEEEEehHHeEECCCC
Confidence            368999999830 4588999999999999987 67999999998  99999999999998754

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=3.8e-13  Score=102.11  Aligned_cols=58  Identities=26%  Similarity=0.553  Sum_probs=52.9

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  443 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~  443 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+. ++||++++.+|+.||||++||+++..
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~~g~~G~~P~~yv~~~~~   64 (68)
T 1wxb_A            7 GKYVKILYDFTARNANELSVLKDEVLEVLEDG-RQWWKLRSRSGQAGYVPCNILGEASG   64 (68)
T ss_dssp             CCCEECSSCBCCSSSSBCCBCTTCEEEEEECS-SSEEEEECTTSCEEEEETTTCCBCCC
T ss_pred             CEEEEECccCCCCCCCccCCCCCCEEEEEEcC-CCEEEEEECCCCEEEEEHHHeEECCC
Confidence            34799999999999999999999999999985 89999987799999999999988754

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}

Probab=99.39  E-value=3.2e-13  Score=102.26  Aligned_cols=58  Identities=17%  Similarity=0.370  Sum_probs=51.9

Q ss_pred             eeeEEEeecccC-CCCCCCCCCCCCEEEEEEe-cCCCcEEEEec-CCcEEEEcCCCeEecc
Q psy10852        385 IEKVIAKYDFDG-NDPDDLPFKKNDILIVVSK-DEEHWWTAQNI-SGEVGSIPVPYVQKYS  442 (563)
Q Consensus       385 ~~~~~a~~~y~~-~~~~el~~~~g~~v~v~~~-~~~~W~~~~~~-~g~~G~~P~~~v~~~~  442 (563)
                      ..+++|+|+|.+ +.++||+|++||+|.|+.+ .+++||+|+.. +|+.||||++||+++.
T Consensus         6 ~~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   66 (67)
T 2kxc_A            6 KQKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKLLE   66 (67)
T ss_dssp             CCEEEESSCBCCSSCSSBCCBCTTCEEEESSSSCBTTEEEEEESSSCCEEEEEGGGEEESC
T ss_pred             CEEEEEeecCCCCCCCCCCcCCCCCEEEEeECCCCCCcEEEEECCCCCEEEEehHHeEECC
Confidence            357999999996 8999999999999999996 78899999854 4999999999999874

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=8.9e-13  Score=103.83  Aligned_cols=59  Identities=27%  Similarity=0.526  Sum_probs=54.8

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ..+++|+|+|.++.++||+|++||+|.|+.+.+++||+|+ .+|+.||||++||+.+...
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   68 (81)
T 2ysq_A           10 IVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQ-IDDEEGWFPASFVRLWVNQ   68 (81)
T ss_dssp             CEEEEESSCCCCSSSSSCCCCTTCEEEEEECCSSSEEEEE-CSSCEEEEEGGGEEESSCC
T ss_pred             ceEEEEeeeECCCCCCcCCCCCCCEEEEEEEcCcCEEEEE-ECCCEEEechHHEEEcCCc
Confidence            4579999999999999999999999999999999999998 6899999999999988654

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}

Probab=99.39  E-value=2.3e-13  Score=107.37  Aligned_cols=58  Identities=29%  Similarity=0.493  Sum_probs=51.3

Q ss_pred             ccceEEeecC-CCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeC------CeeeeecCCceEEcCC
Q psy10852        480 PAFARVKQVR-VPNAYDKTALKLEIGDIIKVTKTNINGQWEGELN------GKTGHFPFTHVEFIPT  539 (563)
Q Consensus       480 ~~~~~~~~~y-~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~------g~~G~~P~~~v~~~~~  539 (563)
                      ..+++|+++| .  +++++||+|++||+|.|+++.++|||.|++.      |++||||++||+.++.
T Consensus        18 ~~~~~Alydy~~--a~~~~eLsf~~GDiI~V~~~~~~gWw~G~~~~~~~~tg~~G~fPsnyV~~~~~   82 (83)
T 2ke9_A           18 SLKVRALKDFWN--LHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVEVVSK   82 (83)
T ss_dssp             CEEEEESSCBCC--CSCTTBCCBCTTCEEEESCSSCSSCEEEEECCSSTTSCCCEEECGGGEESSCC
T ss_pred             CeEEEEccccCC--CCCCCcccccCCCEEEEEEecCCCeEEEEECCCCCCCCCEEEechHHEEECCC
Confidence            3468999999 6  5568999999999999999999999999986      7999999999998754

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.39  E-value=2.6e-13  Score=104.28  Aligned_cols=59  Identities=25%  Similarity=0.443  Sum_probs=53.5

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEe-cCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSK-DEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~-~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ..+++|+|+|.++.++||+|++||+|.|+.+ .+++||+|+ .+|+.||||++||+.+...
T Consensus        10 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   69 (72)
T 1ugv_A           10 FRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGT-LNGKTGLIPENYVEFLSGP   69 (72)
T ss_dssp             CCCEEESSCBCCCSSSBCCBCTTCEEBSCCBCSSTTEEEEE-SSSCEEEEEGGGEEECCSS
T ss_pred             ccEEEEccccCCcCCCEeCCcCCCEEEEEEecCCCCeEEEE-ECCcEEEecHHHEEECCCC
Confidence            3579999999999999999999999999985 678999998 7999999999999988654

>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}

Probab=99.39  E-value=4.1e-13  Score=103.34  Aligned_cols=58  Identities=22%  Similarity=0.531  Sum_probs=53.8

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  443 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~  443 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||.|+ .+|+.||||++||+.+..
T Consensus        13 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~-~~g~~G~~P~~yv~~~~~   70 (72)
T 4glm_A           13 LTYGVALYRFQALEPNELDFEVGDKIRILATLEDGWLEGS-LKGRTGIFPYRFVKLCPA   70 (72)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEECSTTEEEEE-ETTEEEEEEGGGEEEEC-
T ss_pred             CeEEEECccCCCCCCCcCCCCCCCEEEEEEccCCCEEEEE-ECCcEEEEChHHeEECCC
Confidence            4579999999999999999999999999999999999998 799999999999998754

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=7.5e-13  Score=102.51  Aligned_cols=57  Identities=16%  Similarity=0.121  Sum_probs=51.1

Q ss_pred             ccceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEe----CCeeeeecCCceEEcCC
Q psy10852        480 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL----NGKTGHFPFTHVEFIPT  539 (563)
Q Consensus       480 ~~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~----~g~~G~~P~~~v~~~~~  539 (563)
                      ...++|+++|.  ++ ++||+|++||+|.|+++.++|||+|+.    +|++||||++||+.++.
T Consensus        10 ~~~~~alydy~--~~-~~eLs~~~Gd~i~vl~~~~~gWw~g~~~~~~~g~~G~~P~~yv~~~~~   70 (75)
T 2egc_A           10 KDVYVSIADYE--GD-EETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKKNS   70 (75)
T ss_dssp             CEEEEECSCBC--CC-SSSCCBCTTCEEEECEECTTSEEEEEECCSSSCEEEEEEGGGEEECCS
T ss_pred             CeEEEECCCcC--CC-CCcCCCCCCCEEEEEEcCCCCeEEEEeCCCCCCcEEEEehHHCEECCC
Confidence            34689999998  55 789999999999999999999999999    57999999999999875

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.39  E-value=5.7e-13  Score=104.96  Aligned_cols=60  Identities=20%  Similarity=0.525  Sum_probs=54.7

Q ss_pred             ceeeEEEeecccCCCCCCCCCCCCCEEEEEEec--CCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        384 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       384 ~~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~--~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ....++|+|+|.++.++||+|++||+|.|+.+.  +++||+|+ .+|+.||||++||+.+...
T Consensus        16 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   77 (81)
T 1x43_A           16 NNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGE-RGNQKGKVPITYLELLNSG   77 (81)
T ss_dssp             CCEEEEESSCCCCSSTTBCCCCTTCEEEEECCTTCCTTEEEEE-ETTEEEEEEGGGEEECCCC
T ss_pred             CCeEEEEcccCCCCCCCcCCCCCCCEEEEEEcCCCCCCcEEEE-ECCCEEEEehHHEEECCCC
Confidence            356899999999999999999999999999994  68999998 7999999999999988654

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} SCOP: b.34.2.1

Probab=99.39  E-value=4.4e-13  Score=103.43  Aligned_cols=59  Identities=31%  Similarity=0.729  Sum_probs=54.3

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||.|+ .+|+.||||++||+.+...
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   63 (73)
T 3thk_A            5 KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKKLDPA   63 (73)
T ss_dssp             CCEEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEE-ETTEEEEEEGGGEEECCC-
T ss_pred             CEEEEECcCCCcCCCCccCCCCCCEEEEEECCCCCeEEEE-ECCcEEEEehHHeEECCCC
Confidence            3579999999999999999999999999999999999998 7899999999999988764

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A

Probab=99.39  E-value=6.6e-13  Score=99.27  Aligned_cols=57  Identities=18%  Similarity=0.173  Sum_probs=50.3

Q ss_pred             ccceEEeecCCCCCCCCCCeeccCCCEEEEEEeC-CCCEEEEEeCCeeeeecCCceEEcC
Q psy10852        480 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTN-INGQWEGELNGKTGHFPFTHVEFIP  538 (563)
Q Consensus       480 ~~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~-~~~w~~g~~~g~~G~~P~~~v~~~~  538 (563)
                      +..++|+++|.  +..++||+|++||+|.|+.+. +.+||.|+.+|++||||++||+.++
T Consensus         5 ~~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~~W~~~~~~g~~G~~P~~yv~~~~   62 (63)
T 3eg3_A            5 PNLFVALYDFV--ASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYITPVN   62 (63)
T ss_dssp             TTEEEESSCBC--CCSSSBCCBCTTCEEEEEEECTTSSEEEEEETTEEEEEEGGGEEESC
T ss_pred             CEEEEEcceEC--CCCCCccCCCCCCEEEEEEeCCCCCeEEEEECCCeEEEehHHeEECC
Confidence            34789999998  555889999999999999954 5679999999999999999999875

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=8.5e-13  Score=105.61  Aligned_cols=59  Identities=25%  Similarity=0.545  Sum_probs=54.9

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||+|+. +|+.||||++||+++...
T Consensus        17 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~-~g~~G~~P~~yv~~~~~~   75 (88)
T 2cub_A           17 NMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSY-NGQVGWFPSNYVTEEGDS   75 (88)
T ss_dssp             CEEEEESSCCCCCSTTBCCCCTTEEEEEEEECTTSEEEEEE-TTEEEEEEGGGEEECCCC
T ss_pred             CCEEEEccccCCCCCCCcCCCCCCEEEEEEccCCCeEEEEE-CCcEEEEehHHEEECCCc
Confidence            45799999999999999999999999999999999999984 999999999999988654

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.39  E-value=5.2e-13  Score=104.33  Aligned_cols=60  Identities=27%  Similarity=0.561  Sum_probs=54.1

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecC-CCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE-EHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~-~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ..+++|+|+|.++.++||+|++||+|.|+.+.+ ++||+|++.+|+.||||++||+.+...
T Consensus        13 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~   73 (78)
T 2dl5_A           13 PLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYLQFPTSS   73 (78)
T ss_dssp             SEEEEECSCBCCCSTTBCCBCSSEEEEEEECCSSSSEEEEECTTCCEEEEETTTSCCSCCC
T ss_pred             CcEEEEceeECCCCCCCCCCCCCCEEEEEeccCCCCcEEEEeCCCCEEEEEhHHEEECCCC
Confidence            347999999999999999999999999999985 899999865699999999999887543

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A

Probab=99.39  E-value=1.2e-12  Score=104.38  Aligned_cols=57  Identities=18%  Similarity=0.212  Sum_probs=51.1

Q ss_pred             ccceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEe--CCeeeeecCCceEEcCC
Q psy10852        480 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIPT  539 (563)
Q Consensus       480 ~~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~--~g~~G~~P~~~v~~~~~  539 (563)
                      ..+++|+++|.  +.+++||+|++||+|.|+++. +|||.|+.  +|++||||++||+.++.
T Consensus        25 ~~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~~~g~~G~~P~~yv~~~~~   83 (86)
T 2oi3_A           25 DIIVVALYDYE--AIHHEDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARVDS   83 (86)
T ss_dssp             SEEEEESSCCC--CSSSSCCCCCTTCEEEEEEES-SSEEEEEETTTCCEEEEEGGGEEEGGG
T ss_pred             CcEEEECccCC--CCCCCcCcCCCCCEEEEEEcC-CCeEEEEECCCCCEEEEehHHcEEccc
Confidence            34789999998  555889999999999999988 69999999  89999999999999854

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A

Probab=99.39  E-value=7.5e-13  Score=100.85  Aligned_cols=58  Identities=17%  Similarity=0.157  Sum_probs=51.6

Q ss_pred             ceEEeecCC-CCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeC--CeeeeecCCceEEcCCCC
Q psy10852        482 FARVKQVRV-PNAYDKTALKLEIGDIIKVTKTNINGQWEGELN--GKTGHFPFTHVEFIPTNE  541 (563)
Q Consensus       482 ~~~~~~~y~-~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~--g~~G~~P~~~v~~~~~~~  541 (563)
                      .++|+++|. ++  +++||+|++||+|.|+++.++|||.|+..  |++||||++||+.+....
T Consensus         4 ~~~alydy~~~~--~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~~~~~   64 (69)
T 1ruw_A            4 KFEAAYDFPGSG--SSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKDTR   64 (69)
T ss_dssp             EEEESSCBCCCS--CTTBCCBCTTCEEEEEEECTTSEEEEEETTSSCEEEEEGGGEEECCSCS
T ss_pred             EEEEccccCCCC--CCCcccCCCCCEEEEEEecCCCeEEEEECCCCCEEEEehHHeEEcCCcc
Confidence            688999994 44  58899999999999999989999999998  999999999999886543

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=5.1e-13  Score=102.97  Aligned_cols=57  Identities=33%  Similarity=0.444  Sum_probs=51.2

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEeCC--CCEEEEEeCCeeeeecCCceEEcCCC
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI--NGQWEGELNGKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~--~~w~~g~~~g~~G~~P~~~v~~~~~~  540 (563)
                      +++|+++|.  +++++||+|++||+|.|+++.+  +|||.|+++|++||||++||+.+...
T Consensus         9 ~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   67 (73)
T 2dm1_A            9 TAVARYNFA--ARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEEEGIQ   67 (73)
T ss_dssp             EEEESSCBC--CCSTTBCCBCTTCEEECCBSSSSSSSCEEEEETTEEEEECSSSEEECCCC
T ss_pred             EEEECccCC--cCCCCcCCCCCCCEEEEEEecCCCCCeEEEEECCeEEEeehHHEEEcCCC
Confidence            689999998  5568899999999999999874  59999999999999999999998654

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A

Probab=99.39  E-value=8.2e-13  Score=106.84  Aligned_cols=61  Identities=30%  Similarity=0.709  Sum_probs=55.8

Q ss_pred             ceeeEEEeecccCCCCC-CCCCCCCCEEEEEEecCC-----CcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        384 TIEKVIAKYDFDGNDPD-DLPFKKNDILIVVSKDEE-----HWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       384 ~~~~~~a~~~y~~~~~~-el~~~~g~~v~v~~~~~~-----~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ....++|+|+|.++.++ ||+|++||+|.|+.+.++     +||+|++.+|+.||||++||+.+...
T Consensus        13 ~~~~~~alydy~~~~~~~eLsf~~Gd~i~v~~~~~~~~~~~gWw~g~~~~g~~G~~P~~yv~~~~~~   79 (92)
T 1jqq_A           13 KLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEIIKRR   79 (92)
T ss_dssp             TCEEEEESSBBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEEETTSCEEEEEGGGEEECCCC
T ss_pred             cCEEEEECccCCCCCCCCCcCCCCCCEEEEEECCCCCCCCCCCeEEEeCCCCEEEEehHHeEECCCC
Confidence            45689999999999999 999999999999999876     99999866899999999999988654

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.39  E-value=3.5e-13  Score=102.68  Aligned_cols=58  Identities=21%  Similarity=0.248  Sum_probs=51.9

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCee-eeecCCceEEcCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKT-GHFPFTHVEFIPTN  540 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~-G~~P~~~v~~~~~~  540 (563)
                      ..++|+++|.  +..++||+|++||+|.|+.+.++|||.|++.+++ ||||++||+.+...
T Consensus         8 ~~~~alydy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~~G~~P~~yv~~~~~~   66 (69)
T 2eqi_A            8 RTVKALYDYK--AKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDISGP   66 (69)
T ss_dssp             CEEEESSCBC--CCSSSCCCBCTTCEEESCCCCSSSCEEEEETTEEEEEECGGGEEECCSC
T ss_pred             cEEEECeeEC--CCCcCccCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEchHHcEECccC
Confidence            3689999998  5558899999999999999988999999999877 99999999998654

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.39  E-value=3.6e-13  Score=98.83  Aligned_cols=53  Identities=23%  Similarity=0.275  Sum_probs=48.1

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEeCC-CCEEEEEe--CCeeeeecCCceEE
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI-NGQWEGEL--NGKTGHFPFTHVEF  536 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~-~~w~~g~~--~g~~G~~P~~~v~~  536 (563)
                      .++|+++|.  +.+++||+|++||+|.|+++.+ +|||.|+.  +|++||||++||++
T Consensus         3 ~~~alydy~--~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~~~g~~G~~P~~yv~~   58 (58)
T 1zuu_A            3 ENKVLYAYV--QKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIRI   58 (58)
T ss_dssp             CCEECSCBC--CCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEEC
T ss_pred             EEEEeeeEC--CcCCCcccCCCCCEEEEeEcCCCCCCEEEEECCCCCEEEEEHHHEEC
Confidence            478999999  5558899999999999999887 89999999  89999999999974

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A

Probab=99.39  E-value=4.7e-13  Score=101.35  Aligned_cols=56  Identities=23%  Similarity=0.323  Sum_probs=50.8

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCC--eeeeecCCceEEcCC
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNG--KTGHFPFTHVEFIPT  539 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g--~~G~~P~~~v~~~~~  539 (563)
                      .++|+++|.  +.+++||+|++||+|.|+++.++|||.|+..+  +.||||++||+.+..
T Consensus         8 ~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   65 (67)
T 2o9s_A            8 EAIAKFNFN--GDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIKR   65 (67)
T ss_dssp             EEEECSCBC--CSSTTBCCBCTTCEEEEEEECSSSEEEEECTTSSCEEEEEGGGEEEEEC
T ss_pred             EEEECccCC--cCCcCccCCCCCCEEEEEEecCCCEEEEEECCCCCEEEEChHHeEECCC
Confidence            688999998  55689999999999999999899999999986  999999999998864

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}

Probab=99.39  E-value=4.2e-13  Score=102.26  Aligned_cols=59  Identities=34%  Similarity=0.702  Sum_probs=53.9

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||+|+ .+|+.||||++||+.+...
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   66 (69)
T 2dil_A            8 AQEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVE-RNGQRGFVPGSYLEKLSGP   66 (69)
T ss_dssp             CCEEECCSCBCCSSSSSCCBCTTCEEEEEECCSSSEEEEE-ETTEEEEEEGGGCCBCCCS
T ss_pred             CcEEEECccCCccCcCccCCCCCCEEEEEECCCCCEEEEE-ECCCEEEEehHHeEEcCCC
Confidence            3479999999999999999999999999999889999998 4799999999999987543

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A

Probab=99.38  E-value=8.2e-14  Score=105.56  Aligned_cols=58  Identities=31%  Similarity=0.675  Sum_probs=53.8

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEecc
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS  442 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~  442 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||.|++.+|+.||||++||+++.
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   65 (67)
T 1aww_A            8 LKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAE   65 (67)
T ss_dssp             CCEEEBSSCCCCSSSSSCCCCSSCEEECCCCCSSSEECCBCTTSCBCCEETTTBCCSC
T ss_pred             CeEEEECccCCCCCCCCccCCCCCEEEEEEccCCCcEEEEECCCCEEEEchHhEEEcC
Confidence            4579999999999999999999999999999889999998779999999999998764

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=5.2e-13  Score=106.21  Aligned_cols=59  Identities=22%  Similarity=0.302  Sum_probs=54.2

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEe--cCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSK--DEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~--~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+  .+++||+|+ .+|+.||||++||+++...
T Consensus         8 ~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~-~~g~~G~fP~~yv~~~~~~   68 (85)
T 2dlp_A            8 SGYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGS-AGGRSGLFPADIVQPAAAP   68 (85)
T ss_dssp             CCEEEESSCBCCSSSSBCCBCTTCEEEECCCSCCCTTEEEEE-SSSCEEEEETTSEEECCCS
T ss_pred             CEEEEECCCCCccCcCCccCcCCCEEEEEEccCCCCCeEEEE-ECCEEEEechHHeEECCCc
Confidence            3479999999999999999999999999998  788999998 6899999999999988654

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens}

Probab=99.38  E-value=1.8e-13  Score=110.05  Aligned_cols=61  Identities=33%  Similarity=0.535  Sum_probs=54.1

Q ss_pred             ccceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCCCC
Q psy10852        480 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET  542 (563)
Q Consensus       480 ~~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~~~  542 (563)
                      ..+++|+++|.  +.+++||+|++||+|.|+.+.++|||.|+++|++||||++||+.+.....
T Consensus        18 ~~~~~Alydy~--a~~~~eLsf~~Gd~i~V~~~~~~gWw~g~~~g~~G~fPsnyV~~~~~~~~   78 (92)
T 2o2o_A           18 RRRCQVAFSYL--PQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGESD   78 (92)
T ss_dssp             SCEEEECSCBC--CCSSSCCCBCSSCEEECCCGGGSSCBCCEETTEECCBCSSSEECCSSCSS
T ss_pred             CeEEEEccccC--CCCCccccccCCCEEEEeEecCCCEEEEEECCeEEEeehHHEEECCCCCc
Confidence            34789999999  45588999999999999999889999999999999999999999876543

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=4.6e-13  Score=102.71  Aligned_cols=59  Identities=25%  Similarity=0.517  Sum_probs=54.3

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||+|+. .|+.||||++||+++...
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~-~g~~G~~P~~yv~~~~~~   66 (71)
T 2dnu_A            8 EEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRY-LGKEGWAPASYLKKAKDS   66 (71)
T ss_dssp             SEEEECSSCBCCSSTTBCCBCTTCEEEECCCCSSSEEEEEE-TTEEEEEEGGGCEECCCC
T ss_pred             CCEEEECCccCCCCCCCCcCCCCCEEEEeECCCCCeEEEEE-CCcEEEEEHHHeEEccCC
Confidence            45799999999999999999999999999998899999985 599999999999988664

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A

Probab=99.38  E-value=5.6e-13  Score=97.84  Aligned_cols=53  Identities=23%  Similarity=0.227  Sum_probs=48.4

Q ss_pred             ceEEeecC-CCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeC--CeeeeecCCceEE
Q psy10852        482 FARVKQVR-VPNAYDKTALKLEIGDIIKVTKTNINGQWEGELN--GKTGHFPFTHVEF  536 (563)
Q Consensus       482 ~~~~~~~y-~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~--g~~G~~P~~~v~~  536 (563)
                      .++|+++| .  +.+++||+|++||+|.|+++.++|||.|+..  |++||||++||+.
T Consensus         2 ~~~al~d~~~--~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~   57 (58)
T 1zuy_A            2 MFEAAYDFPG--SGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMKP   57 (58)
T ss_dssp             EEEESSCBCC--CSCTTBCCBCTTCEEEEEEECTTSEEEEEESSCSCEEEEEGGGEEC
T ss_pred             EEEEecccCC--CCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEecHHHEEE
Confidence            57899999 7  4458899999999999999999999999998  9999999999975

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=5.8e-13  Score=105.94  Aligned_cols=59  Identities=34%  Similarity=0.717  Sum_probs=54.8

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  443 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~  443 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||+|++.+|+.||||++||+++..
T Consensus        19 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~~~~   77 (85)
T 2yuq_A           19 ETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVEKSP   77 (85)
T ss_dssp             SCEEEESSCCCCSCSSBCCCCBTEEEEEEECCSSSEEEEECSSSCEEEEETTTCEECCC
T ss_pred             CeEEEECcCCCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCEEEEehHHeEEccC
Confidence            45799999999999999999999999999999899999987899999999999998744

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.38  E-value=3.1e-13  Score=105.13  Aligned_cols=58  Identities=34%  Similarity=0.527  Sum_probs=52.4

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~  540 (563)
                      .+++|+++|.  +.+++||+|++||+|.|+++.++|||.|+++|++||||++||+.+...
T Consensus        11 ~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   68 (76)
T 1ujy_A           11 LIVKARFNFK--QTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKSS   68 (76)
T ss_dssp             EEEECCSCBC--CSSTTSCCBCSSCCEEESSCCSSSCEEEEETTEEEEECTTTSEECCHH
T ss_pred             EEEEECccCC--cCCCCcccCCCCCEEEEEEecCCCEEEEEECCCEEEechHHEEECCcc
Confidence            4688999998  556889999999999999998899999999999999999999998643

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}

Probab=99.38  E-value=5.1e-13  Score=102.16  Aligned_cols=60  Identities=22%  Similarity=0.435  Sum_probs=54.6

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEe-cCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~-~~g~~G~~P~~~v~~~~~~  444 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||.|++ .+|+.||||++||+++...
T Consensus         7 ~~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   67 (70)
T 2cuc_A            7 GNMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPVSGP   67 (70)
T ss_dssp             SCCEECCSCBCCCSTTBCCBCTTCEEEEEEEEETTEEEEEETTTCCEEEEEGGGCEECCCT
T ss_pred             CcEEEECeeECcCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEEchHHeEECcCC
Confidence            34799999999999999999999999999998899999985 5899999999999988653

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A

Probab=99.38  E-value=9.2e-13  Score=97.99  Aligned_cols=61  Identities=20%  Similarity=0.339  Sum_probs=51.0

Q ss_pred             CcEEEEcCCCeEeccCCcccccccccCCCCCCCCCCCCCCCcccccccccccccceEEeecCCCCCCCCCCeeccCCCEE
Q psy10852        428 GEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDII  507 (563)
Q Consensus       428 g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~eL~~~~gd~i  507 (563)
                      |+.||||++||+++...                                 ....+++|+++|.  +++++||+|++||+|
T Consensus         2 g~~G~~P~~yv~~~~~~---------------------------------~~~~~~~alydy~--a~~~~eLsf~~Gd~i   46 (62)
T 1g2b_A            2 DRQGFVPAAYVKKLDSG---------------------------------TGKELVLALYDYQ--EKSPREVTMKKGDIL   46 (62)
T ss_dssp             CEEEEEEGGGEEECCCC---------------------------------SSSCEEEECSCBC--CSSTTBCCBCTTCEE
T ss_pred             CCccccccceEeecCCC---------------------------------CCceEEEEeeeEC--CCCCCccCCCCCCEE
Confidence            68999999999976442                                 0123689999999  556889999999999


Q ss_pred             EEEEeCCCCEEEEEeC
Q psy10852        508 KVTKTNINGQWEGELN  523 (563)
Q Consensus       508 ~v~~~~~~~w~~g~~~  523 (563)
                      .|+++.+++||.|+++
T Consensus        47 ~v~~~~~~~Ww~g~~n   62 (62)
T 1g2b_A           47 TLLNSTNKDWWKVEVN   62 (62)
T ss_dssp             EEEECCSSSEEEEEEC
T ss_pred             EEEEecCCCEEEEEeC
Confidence            9999999999999875

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 3ua7_A 3ua6_A 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A ...

Probab=99.38  E-value=6.6e-13  Score=105.16  Aligned_cols=61  Identities=18%  Similarity=0.190  Sum_probs=53.7

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEe--CCeeeeecCCceEEcCCCCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIPTNETS  543 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~--~g~~G~~P~~~v~~~~~~~~~  543 (563)
                      .+++|+++|.  +.+++||+|++||+|.|+.+.++|||.|+.  +|++||||++||+.++....+
T Consensus         7 ~~~~Alydy~--a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~~~e   69 (84)
T 4ag1_C            7 TLFVALYDYN--ATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVDSIQGE   69 (84)
T ss_dssp             CEEEESSCBC--CSBTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEETTTCC--
T ss_pred             EEEEEcccCC--CCCCCcccccCCCEEEEEEecCCCeEEEEECCCCCEEEEehHHeEECCCcccc
Confidence            4789999998  555889999999999999999999999999  899999999999999776554

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=5.6e-13  Score=104.42  Aligned_cols=58  Identities=21%  Similarity=0.493  Sum_probs=53.6

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEec-CCcEEEEcCCCeEeccC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYSE  443 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~-~g~~G~~P~~~v~~~~~  443 (563)
                      ..+++|+|+|.++.++||+|++||+|.|+.+ +++||+|+.. +|+.||||++||+++..
T Consensus        17 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~gW~~g~~~~~g~~G~fP~~yv~~~~~   75 (79)
T 1x6b_A           17 LPQVEITKAFFAKQADEVTLQQADVVLVLQQ-EDGWLYGERLRDGETGWFPEDFARFISG   75 (79)
T ss_dssp             CCEEEESSCCCCCSSSBCCCCTTEEEEEEEE-ETTEEEEEETTTCCEEEECGGGCEEEES
T ss_pred             CCEEEECeeECCCCcCCcCCCCCCEEEEEEe-CCCEEEEEECCCCCEEEEchHHEEECCC
Confidence            4589999999999999999999999999999 8999999865 89999999999998864

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}

Probab=99.38  E-value=4.2e-13  Score=105.82  Aligned_cols=58  Identities=26%  Similarity=0.412  Sum_probs=52.7

Q ss_pred             eeeEEEeecc-cCCCCCCCCCCCCCEEEEEEecCCCcEEEEecC-----CcEEEEcCCCeEecc
Q psy10852        385 IEKVIAKYDF-DGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-----GEVGSIPVPYVQKYS  442 (563)
Q Consensus       385 ~~~~~a~~~y-~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~-----g~~G~~P~~~v~~~~  442 (563)
                      ..+++|+|+| .++.++||+|++||+|.|+.+.+++||+|+..+     |+.||||++||+.+.
T Consensus        18 ~~~~~Alydy~~a~~~~eLsf~~GDiI~V~~~~~~gWw~G~~~~~~~~tg~~G~fPsnyV~~~~   81 (83)
T 2ke9_A           18 SLKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVEVVS   81 (83)
T ss_dssp             CEEEEESSCBCCCSCTTBCCBCTTCEEEESCSSCSSCEEEEECCSSTTSCCCEEECGGGEESSC
T ss_pred             CeEEEEccccCCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCCCCCCCEEEechHHEEECC
Confidence            5589999999 899999999999999999999999999998553     799999999999774

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=1.9e-12  Score=103.70  Aligned_cols=59  Identities=29%  Similarity=0.637  Sum_probs=54.3

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||+|+ ..|+.||||++||+.+...
T Consensus        17 ~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   75 (88)
T 1x2q_A           17 ARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGE-NHRGIGLFPSNFVTTNLNI   75 (88)
T ss_dssp             CEEEEESSCCCCCSSSCCCCCSSCEEEEEECSCSSSEEEE-ETTEEEEECGGGEESCSSC
T ss_pred             CeEEEEcccCCCCCcCccCCCCCCEEEEEEeCCCCEEEEE-ECCcEEEEehHHEEEcCCc
Confidence            5689999999999999999999999999999889999998 5789999999999987654

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=1.1e-12  Score=103.25  Aligned_cols=59  Identities=22%  Similarity=0.473  Sum_probs=53.1

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCC-CcEEEEec-CCcEEEEcCCCeEeccC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEE-HWWTAQNI-SGEVGSIPVPYVQKYSE  443 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~-~W~~~~~~-~g~~G~~P~~~v~~~~~  443 (563)
                      ...|+|+|+|.++.++||+|++||+|.|+.+.++ +||.|++. +|+.||||++||+....
T Consensus        17 ~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   77 (81)
T 1x6g_A           17 GTQCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGALRERSG   77 (81)
T ss_dssp             TCEEEESSCBSSCCTTCCCBCTTCEEEEEECCCSSSEEEEEETTTCCEEEEEGGGEEECCC
T ss_pred             CCEEEECCCCCcCCCCCCCCCCCCEEEEEeccCCCCeEEEEeCCCCCEEEEehHHEEEccc
Confidence            4579999999999999999999999999998776 99999864 89999999999997643

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=3.3e-13  Score=103.43  Aligned_cols=58  Identities=16%  Similarity=0.026  Sum_probs=51.4

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEE--eCCeeeeecCCceEEcCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVEFIPT  539 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~--~~g~~G~~P~~~v~~~~~  539 (563)
                      ..++|+++|.+. ++++||+|++||+|.|+.+.++|||.|+  .+|++||||++||+.+..
T Consensus         8 ~~~~Alydy~~~-~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~~~   67 (71)
T 2gqi_A            8 RRVRAILPYTKV-PDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVSG   67 (71)
T ss_dssp             CCEEESSCCCCC-TTSSCCCCCTTCBCCCCEECSSSCEEEECTTTCCEEEECTTSEEECCC
T ss_pred             CEEEECcccCCC-CCCCCCCCCCCCEEEEEEecCCCEEEEEECCCCCEEEeeHHHEEECCC
Confidence            368999999940 5588999999999999999999999999  679999999999998853

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}

Probab=99.37  E-value=7e-13  Score=101.36  Aligned_cols=57  Identities=23%  Similarity=0.313  Sum_probs=51.5

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCC--eeeeecCCceEEcCCC
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNG--KTGHFPFTHVEFIPTN  540 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g--~~G~~P~~~v~~~~~~  540 (563)
                      .++|+++|.  +.+++||+|++||+|.|+++.+++||.|+..+  ++||||++||+.+...
T Consensus         9 ~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   67 (70)
T 2ecz_A            9 EAIAKFNFN--GDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVISGP   67 (70)
T ss_dssp             CEEESSCCC--CCSTTBCCCCTTCBCEEEEEEETTEEEEEETTTTEEEEECTTTEEESSSC
T ss_pred             EEEECccCC--CCCcCCcCCCCCCEEEEEEecCCCeEEEEECCCCCEEEEchHHEEECCCC
Confidence            689999999  55588999999999999999889999999986  9999999999998654

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}

Probab=99.37  E-value=6.4e-13  Score=100.87  Aligned_cols=57  Identities=18%  Similarity=0.178  Sum_probs=50.7

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEE-eCCeeeeecCCceEEcCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGE-LNGKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~-~~g~~G~~P~~~v~~~~~~  540 (563)
                      .+++|+++|.  +.+++||+|++||+|.|+++ +++||.|+ .+|+.||||++||+.++..
T Consensus         8 ~~~~alydy~--~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~g~~G~~P~~yv~~~~~~   65 (68)
T 1wxt_A            8 LKMQVLYEFE--ARNPRELTVVQGEKLEVLDH-SKRWWLVKNEAGRSGYIPSNILEPLSGP   65 (68)
T ss_dssp             EEEEESSCBC--CCSSSBCCBCTTCEEEEEEC-SSSEEEEECTTSCEEEEEGGGEECCCCS
T ss_pred             eEEEECceEC--CCCcCcCCCCCCCEEEEEEc-CCCEEEEEECCCCEEEEEhHHcEECCCC
Confidence            4689999999  55588999999999999998 48999999 8899999999999988653

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.37  E-value=6.7e-13  Score=104.38  Aligned_cols=59  Identities=31%  Similarity=0.738  Sum_probs=53.3

Q ss_pred             eeeEEEeecccCCCCC-CCCCCCCCEEEEEEecCC-----CcEEEEecCCcEEEEcCCCeEeccC
Q psy10852        385 IEKVIAKYDFDGNDPD-DLPFKKNDILIVVSKDEE-----HWWTAQNISGEVGSIPVPYVQKYSE  443 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~-el~~~~g~~v~v~~~~~~-----~W~~~~~~~g~~G~~P~~~v~~~~~  443 (563)
                      ...++|+|+|.++.++ ||+|++||+|.|+.+.++     +||+|++.+|+.||||++||+.+..
T Consensus        14 ~~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~   78 (80)
T 2v1r_A           14 LEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEIIKR   78 (80)
T ss_dssp             CEEEEESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECTTSCEEEEEGGGEEEC--
T ss_pred             CEEEEECccCCCCCCCCEecCCCCCEEEEEECCCCCCCCCCcEEEEeCCCCeEEEEHHHeEEcCC
Confidence            5689999999999999 999999999999999876     9999986589999999999998754

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=1.2e-12  Score=102.53  Aligned_cols=59  Identities=27%  Similarity=0.449  Sum_probs=52.7

Q ss_pred             ceeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEec-CCcEEEEcCCCeEeccC
Q psy10852        384 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYSE  443 (563)
Q Consensus       384 ~~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~-~g~~G~~P~~~v~~~~~  443 (563)
                      ....++|||+|.++.++||+|++||+|.|+. .+++||++++. +|+.||||++||+++..
T Consensus        16 ~~~~~~Alydy~a~~~~eLs~~~Gd~i~v~~-~~~~Ww~~~~~~~g~~G~~P~~yv~~~~~   75 (79)
T 2cud_A           16 DSDFLAVLSDYPSPDISPPIFRRGEKLRVIS-DEGGWWKAISLSTGRESYIPGICVARVSG   75 (79)
T ss_dssp             CCCEEEESSCSSCTTTSCCSSCTTCEEEEEE-EETTEEEEEETTTCCEEEEEGGGEEEECC
T ss_pred             CCeEEEEccCCCCCCCCcCCCCCCCEEEEEe-cCCCeEEEEECCCCCEEEeeHHHeEEccC
Confidence            3457999999999999999999999999998 46799999865 69999999999998754

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}

Probab=99.37  E-value=5.3e-13  Score=102.07  Aligned_cols=58  Identities=26%  Similarity=0.284  Sum_probs=52.2

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEE--eCCeeeeecCCceEEcCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~--~~g~~G~~P~~~v~~~~~~  540 (563)
                      .+++|+++|.  +..++||+|++||+|.|+++.++|||.|+  .+|+.||||++||+.+...
T Consensus         8 ~~~~al~~y~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   67 (70)
T 2cuc_A            8 NMFVALHTYS--AHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPVSGP   67 (70)
T ss_dssp             CCEECCSCBC--CCSTTBCCBCTTCEEEEEEEEETTEEEEEETTTCCEEEEEGGGCEECCCT
T ss_pred             cEEEECeeEC--cCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEEchHHeEECcCC
Confidence            3689999999  55588999999999999999889999999  7899999999999998654

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=1.1e-12  Score=100.32  Aligned_cols=60  Identities=20%  Similarity=0.450  Sum_probs=53.2

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecC-CCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE-EHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~-~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ..+++|+|+|.++.++||+|++||+|.|+.+.+ ++||.++..+|+.||||++||+.+...
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~vl~~~~~~gW~~~~~~~g~~G~~P~~yv~~~~~~   67 (70)
T 2ct4_A            7 GGHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYLRVTSGP   67 (70)
T ss_dssp             SCEEEESSCBCCCSTTCCCBCTTCEEEEEECCSSSCEEEEECSSSCEEEEEGGGEEECCCC
T ss_pred             CCEEEEcccCCCCCCCcCCCCCCCEEEEEeccCCCCeEEEEeCCCCEEEEEhHHeEEcCCC
Confidence            347999999999999999999999999999874 679999865699999999999987653

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A

Probab=99.37  E-value=1.3e-13  Score=104.38  Aligned_cols=57  Identities=18%  Similarity=0.163  Sum_probs=50.9

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEE-eCCeeeeecCCceEEcCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGE-LNGKTGHFPFTHVEFIPT  539 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~-~~g~~G~~P~~~v~~~~~  539 (563)
                      ..++|+++|.  +.+++||+|++||+|.|+++.+++||.|+ .+|++||||++||+.+++
T Consensus         9 ~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~   66 (67)
T 1aww_A            9 KKVVALYDYM--PMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAED   66 (67)
T ss_dssp             CEEEBSSCCC--CSSSSSCCCCSSCEEECCCCCSSSEECCBCTTSCBCCEETTTBCCSCC
T ss_pred             eEEEECccCC--CCCCCCccCCCCCEEEEEEccCCCcEEEEECCCCEEEEchHhEEEcCC
Confidence            3689999998  55588999999999999999889999998 789999999999987654

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D

Probab=99.37  E-value=4.1e-13  Score=99.32  Aligned_cols=54  Identities=24%  Similarity=0.312  Sum_probs=47.7

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEeCC-CCEEEEEeC-CeeeeecCCceEEc
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI-NGQWEGELN-GKTGHFPFTHVEFI  537 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~-~~w~~g~~~-g~~G~~P~~~v~~~  537 (563)
                      .++|+++|.  +.+++||+|++||+|.|+++.+ +|||.|+.+ |+.||||++||+.|
T Consensus         5 ~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~~g~~G~~P~~yv~~l   60 (60)
T 2x3w_D            5 RVRALYDYD--GQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEAI   60 (60)
T ss_dssp             EEEECSCBC--CSSSSBCCBCTTCEEEECSCCCSSSEEEEECSSCCEEEEEGGGEEC-
T ss_pred             EEEECcccC--ccCCCcccCCCCCEEEEEEccCCCCceEEEeCCCCEEEecHHHEEEC
Confidence            588999999  4558899999999999999765 599999998 99999999999865

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.37  E-value=5.1e-13  Score=108.74  Aligned_cols=61  Identities=21%  Similarity=0.509  Sum_probs=55.2

Q ss_pred             ceeeEEEeecccCCC------CCCCCCCCCCEEEEE-EecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        384 TIEKVIAKYDFDGND------PDDLPFKKNDILIVV-SKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       384 ~~~~~~a~~~y~~~~------~~el~~~~g~~v~v~-~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ....++|||+|.++.      ++||+|++||+|.|+ .+.+++||+|+..+|+.||||++||+.+...
T Consensus        16 ~~~~~~Alydy~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~~g~~G~~Psnyv~~~~~~   83 (96)
T 1wie_A           16 KVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFVQDN   83 (96)
T ss_dssp             CEEEEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEETTCCBCBCCTTSEECCCSC
T ss_pred             CCcEEEECCccCCCcccCCCCCCeeeECCCCEEEEeEecCCCCEEEEEECCCCEEEEchHHEEEcCCC
Confidence            466899999999988      999999999999999 7788899999955999999999999988664

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.37  E-value=5.2e-13  Score=102.68  Aligned_cols=60  Identities=20%  Similarity=0.361  Sum_probs=53.3

Q ss_pred             eeeEEEeecccC-CCCCCCCCCCCCEEEEEEe-cCCCcEEEEec-CCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDG-NDPDDLPFKKNDILIVVSK-DEEHWWTAQNI-SGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~-~~~~el~~~~g~~v~v~~~-~~~~W~~~~~~-~g~~G~~P~~~v~~~~~~  444 (563)
                      ...++|+|+|.+ +.++||+|++||+|.|+.+ .+++||+|++. +|+.||||++||+++...
T Consensus         7 ~~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~~~~   69 (72)
T 1spk_A            7 GQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLSGP   69 (72)
T ss_dssp             SCEEECSSCBCCSSCSSBCCBCTTCEEEECCSSCBTTEEEEEETTTCCEEEEEGGGCEECSSC
T ss_pred             ceEEEEeeeeCCCCCCCCCcCCCCCEEEEeEccCCCCcEEEEECCCCCEEEEehHHeEECCCC
Confidence            357999999996 8999999999999999987 78899999855 499999999999988653

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A

Probab=99.37  E-value=5.4e-13  Score=98.59  Aligned_cols=57  Identities=26%  Similarity=0.612  Sum_probs=53.1

Q ss_pred             eeeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEeeCCCeeeEEecCceeeccc
Q psy10852        111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  168 (563)
Q Consensus       111 ~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~~~g~~G~fP~~yv~~~~~  168 (563)
                      +.++|+|+|.++.+++|+|++||+|.|+++ +++||.+++.+|+.|+||++||+.+..
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~g~~G~~P~~yv~~~~~   58 (60)
T 1i07_A            2 KYAKSKYDFVARNSSELSVMKDDVLEILDD-RRQWWKVRNASGDSGFVPNNILDIMRT   58 (60)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEECGG-GCCEEEEECTTSCEEEEEGGGEEEECC
T ss_pred             eEEEECccCCCCCCCcccCCCCCEEEEEEc-CCCeEEEEECCCCEEEEEHHHeEEccC
Confidence            358999999999999999999999999999 899999998899999999999998753

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.37  E-value=3.8e-13  Score=104.63  Aligned_cols=59  Identities=29%  Similarity=0.611  Sum_probs=54.6

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||+|+ .+|+.||||++||+.+...
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~   68 (76)
T 1ujy_A           10 QLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGT-LNGRTGWFPSNYVREIKSS   68 (76)
T ss_dssp             CEEEECCSCBCCSSTTSCCBCSSCCEEESSCCSSSCEEEE-ETTEEEEECTTTSEECCHH
T ss_pred             CEEEEECccCCcCCCCcccCCCCCEEEEEEecCCCEEEEE-ECCCEEEechHHEEECCcc
Confidence            4579999999999999999999999999999889999998 6999999999999988654

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A

Probab=99.37  E-value=5.1e-13  Score=103.21  Aligned_cols=56  Identities=32%  Similarity=0.392  Sum_probs=50.1

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEeC-CCCEEEEEeCCeeeeecCCceEEcCC
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTN-INGQWEGELNGKTGHFPFTHVEFIPT  539 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~-~~~w~~g~~~g~~G~~P~~~v~~~~~  539 (563)
                      .++|+++|.  +++++||+|++||+|.|+++. +.|||.|+++|++||||++||+.+..
T Consensus        11 ~~~alydy~--~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   67 (74)
T 1gbq_A           11 EAIAKYDFK--ATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPH   67 (74)
T ss_dssp             EEEESSCBC--CSSTTBCCBCTTCEEECCBCSSCSSEEEEEETTEEEEEEGGGEEEEC-
T ss_pred             EEEECccCC--CCCCCeeeEcCCCEEEEeEecCCCCEEEEEECCCEEEEehHhEEEcCC
Confidence            689999999  555889999999999999988 57999999999999999999998753

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=4.5e-13  Score=104.13  Aligned_cols=60  Identities=27%  Similarity=0.275  Sum_probs=50.9

Q ss_pred             cceEEeecCCCCCC-----CCCCeeccCCCEEEEEEeCC-CCEEEEEeCCeeeeecCCceEEcCCC
Q psy10852        481 AFARVKQVRVPNAY-----DKTALKLEIGDIIKVTKTNI-NGQWEGELNGKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       481 ~~~~~~~~y~~~~~-----~~~eL~~~~gd~i~v~~~~~-~~w~~g~~~g~~G~~P~~~v~~~~~~  540 (563)
                      .+++|+++|.++..     .++||+|++||+|.|+.+.+ +|||.|+++|++||||++||+.+...
T Consensus         8 ~~~~Al~dy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~   73 (76)
T 2csi_A            8 RRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFLEEVSGP   73 (76)
T ss_dssp             EEEECSSCCCTTTTSCSSSTTTSCCCCTTCEEEEESSCCSSSEEEEEETTEEEEEEGGGCCBCCCC
T ss_pred             cEEEEcccCCCCCcccCCCCCCcccCCCCCEEEEeEecCCCCeEEEEECCcEEEEehHHEEECCCC
Confidence            36899999984431     17899999999999999876 58999999999999999999988643

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.36  E-value=5.7e-13  Score=104.80  Aligned_cols=59  Identities=24%  Similarity=0.397  Sum_probs=50.8

Q ss_pred             ccceEEeecCCCCCCCCC-CeeccCCCEEEEEEeCCC-----CEEEEEe-CCeeeeecCCceEEcCCC
Q psy10852        480 PAFARVKQVRVPNAYDKT-ALKLEIGDIIKVTKTNIN-----GQWEGEL-NGKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       480 ~~~~~~~~~y~~~~~~~~-eL~~~~gd~i~v~~~~~~-----~w~~g~~-~g~~G~~P~~~v~~~~~~  540 (563)
                      ..+++|+++|.  +.+++ ||+|++||+|.|+++.+.     |||.|+. +|++||||++||+.++..
T Consensus        14 ~~~~~alydy~--~~~~~~eLs~~~Gd~i~v~~~~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~   79 (80)
T 2v1r_A           14 LEFARALYDFV--PENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEIIKRR   79 (80)
T ss_dssp             CEEEEESSCBC--CSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECTTSCEEEEEGGGEEEC---
T ss_pred             CEEEEECccCC--CCCCCCEecCCCCCEEEEEECCCCCCCCCCcEEEEeCCCCeEEEEHHHeEEcCCC
Confidence            34789999998  55688 999999999999998876     9999999 799999999999998653

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=1.1e-12  Score=100.18  Aligned_cols=58  Identities=22%  Similarity=0.214  Sum_probs=52.0

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeC--CeeeeecCCceEEcCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELN--GKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~--g~~G~~P~~~v~~~~~~  540 (563)
                      .+++|+++|.  +.+++||+|++||+|.|+++.++|||.|+..  |+.||||++||+.+...
T Consensus         8 ~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~~~~   67 (70)
T 2ct3_A            8 TPYRAMYQYR--PQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPVSGP   67 (70)
T ss_dssp             EEEEESSCBC--CSSTTBCCBCTTEEEEEEEECSSSCEEEEESSSCCEEEECTTTEEETTCS
T ss_pred             cEEEECccCC--cCCcCCccCCCCCEEEEEEECCCCEEEEEECCCCCEEEechHHeEECCCC
Confidence            3689999999  5558899999999999999999999999985  99999999999988653

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=8.4e-13  Score=103.76  Aligned_cols=59  Identities=36%  Similarity=0.693  Sum_probs=53.8

Q ss_pred             ceeeEEEeecccCCCCCCCCCCCCCEEEEEEecC--CCcEEEEecCCcEEEEcCCCeEeccC
Q psy10852        384 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE--EHWWTAQNISGEVGSIPVPYVQKYSE  443 (563)
Q Consensus       384 ~~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~--~~W~~~~~~~g~~G~~P~~~v~~~~~  443 (563)
                      ....++|+|+|.++.++||+|++||+|.|+.+.+  ++||+|+. +|+.||||++||+.+..
T Consensus        16 ~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~-~g~~G~~P~~yv~~~~~   76 (80)
T 2d8h_A           16 QPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKL-RGQTGIFPANYVTMNSG   76 (80)
T ss_dssp             SCEEEECSSCEECSSTTBCEECTTCEEEEEECCSCSSSEEEEEE-TTEEEEEEGGGCCBCCC
T ss_pred             CCEEEEECccCCcCCCCeeeEcCCCEEEEeECcCCCCCeEEEEE-CCEEEEEchhHeEEcCC
Confidence            3568999999999999999999999999999875  89999985 89999999999987754

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 3ua7_A 3ua6_A 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A ...

Probab=99.36  E-value=8.7e-13  Score=104.44  Aligned_cols=60  Identities=28%  Similarity=0.608  Sum_probs=55.2

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEec-CCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~-~g~~G~~P~~~v~~~~~~  444 (563)
                      ...++|+|+|.++.++||+|.+||+|.|+.+.+++||.|+.. +|+.||||++||+++...
T Consensus         6 ~~~~~Alydy~a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   66 (84)
T 4ag1_C            6 VTLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVDSI   66 (84)
T ss_dssp             CCEEEESSCBCCSBTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEETTTC
T ss_pred             CEEEEEcccCCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCCCEEEEehHHeEECCCc
Confidence            347999999999999999999999999999999999999863 899999999999988764

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.36  E-value=1e-12  Score=100.72  Aligned_cols=58  Identities=43%  Similarity=0.787  Sum_probs=52.6

Q ss_pred             ceeeeecccCCCCCCCCCcCCCCCEEEEEE-ecCCCeeEEeeCCCeeeEEecCceeecc
Q psy10852        110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVS-KDEEHWWTAQNISGEVGSIPVPYVQKYS  167 (563)
Q Consensus       110 ~~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~-~~~~~ww~g~~~~g~~G~fP~~yv~~~~  167 (563)
                      ...++|+|||.++.+++|+|++||+|.|++ +.+++||.|++.+|+.|+||++||++.+
T Consensus        11 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   69 (71)
T 1csk_A           11 GTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKRE   69 (71)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSTTEEEEECTTSCEEEEETTSEEC--
T ss_pred             CCEEEEceeECcCCCCcCCCCCCCEEEEeECCCCCCCEEEEeCCCCEEEEehHHeEEcc
Confidence            456999999999999999999999999999 6789999999889999999999999764

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}

Probab=99.36  E-value=7.3e-13  Score=101.20  Aligned_cols=58  Identities=40%  Similarity=0.725  Sum_probs=51.7

Q ss_pred             eeEEEeecccCCCCC--CCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        386 EKVIAKYDFDGNDPD--DLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~--el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      .+++|+|+|.++.++  ||+|++||+|.|+.+ +++||.|++.+|+.||||++||+.+...
T Consensus         6 ~~~~alydy~~~~~~~~eLsf~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~~~~~   65 (70)
T 2vkn_A            6 YKAKALYPYDADDDDAYEISFEQNEILQVSDI-EGRWWKARRANGETGIIPSNYVQLIDGP   65 (70)
T ss_dssp             EEEEESSCBCCCSSSTTBCCBCTTCEEEEECT-TSSEEEEECTTSCEEEEEGGGEEEEEEE
T ss_pred             EEEEECccCCCCCCCCCcccCCCCCEEEEEEc-CCCeEEEEECCCCEEEEehHHEEECCCC
Confidence            479999999998765  999999999999986 6899999877999999999999987543

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A

Probab=99.36  E-value=1.3e-12  Score=97.20  Aligned_cols=56  Identities=32%  Similarity=0.605  Sum_probs=51.3

Q ss_pred             ceeeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEee-CCCeeeEEecCceeec
Q psy10852        110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKY  166 (563)
Q Consensus       110 ~~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~-~~g~~G~fP~~yv~~~  166 (563)
                      ...++|+|+|.++.+++|+|++||+|.|+++. ++||.|++ .+|+.|+||++||+++
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~~~g~~G~~P~~yv~~~   62 (62)
T 2iim_A            6 DNLVIALHSYEPSHDGDLGFEKGEQLRILEQS-GEWWKAQSLTTGQEGFIPFNFVAKA   62 (62)
T ss_dssp             TCEEEESSCBCCCSTTBCCBCTTCEEEEEECC-SSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CcEEEEcccCCCCCCCCcCCCCCCEEEEEEcC-CCEEEEEECCCCCEEEEEHHHEEEC
Confidence            45789999999999999999999999999995 59999998 6999999999999864

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.36  E-value=9.1e-13  Score=101.84  Aligned_cols=58  Identities=28%  Similarity=0.559  Sum_probs=53.0

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ..+++|+|+|.++.++||+|++||+|.|+.+. ++||+|+ .+|+.||||++||+.+...
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~-~~g~~G~~P~~yv~~~~~~   67 (74)
T 1j3t_A           10 NLKAQALCSWTAKKDNHLNFSKHDIITVLEQQ-ENWWFGE-VHGGRGWFPKSYVKIIPGS   67 (74)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEEC-SSEEEEE-STTCCCEEEGGGEEECCCS
T ss_pred             CeEEEECCCCCCCCCCccCCCCCCEEEEEecC-CCEEEEE-ECCcEEEEchHHeEECCCC
Confidence            35799999999999999999999999999994 7999998 6899999999999988654

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=1.1e-12  Score=105.52  Aligned_cols=60  Identities=28%  Similarity=0.593  Sum_probs=54.6

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEec-CCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~-~g~~G~~P~~~v~~~~~~  444 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||+|++. +|+.||||++||+.+...
T Consensus        17 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~fP~~yv~~~~~~   77 (90)
T 2yup_A           17 YGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQVSREP   77 (90)
T ss_dssp             SEEEEECSCCCCCSSSBCCCCTTCEEEESSCCCSSEEEEECTTTCCEEEEEGGGEEEEECC
T ss_pred             ceEEEEeecCCcCCcCcCCCCCCCEEEEEEEcCCCeEEEEECCCCCEEEEehHHeEEcCCC
Confidence            457999999999999999999999999999988999999853 399999999999988764

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=6.8e-13  Score=103.08  Aligned_cols=58  Identities=22%  Similarity=0.552  Sum_probs=52.5

Q ss_pred             eeeEEEeecccCCC-------CCCCCCCCCCEEEEEEecC-CCcEEEEecCCcEEEEcCCCeEeccC
Q psy10852        385 IEKVIAKYDFDGND-------PDDLPFKKNDILIVVSKDE-EHWWTAQNISGEVGSIPVPYVQKYSE  443 (563)
Q Consensus       385 ~~~~~a~~~y~~~~-------~~el~~~~g~~v~v~~~~~-~~W~~~~~~~g~~G~~P~~~v~~~~~  443 (563)
                      ..+++|+|+|.++.       ++||+|++||+|.|+.+.+ ++||.|+ .+|+.||||++||+.+..
T Consensus         7 ~~~~~Al~dy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~   72 (76)
T 2csi_A            7 GRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGE-LNGQKGLVPSNFLEEVSG   72 (76)
T ss_dssp             SEEEECSSCCCTTTTSCSSSTTTSCCCCTTCEEEEESSCCSSSEEEEE-ETTEEEEEEGGGCCBCCC
T ss_pred             ccEEEEcccCCCCCcccCCCCCCcccCCCCCEEEEeEecCCCCeEEEE-ECCcEEEEehHHEEECCC
Confidence            45799999999998       8999999999999999876 4899998 589999999999998754

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A

Probab=99.36  E-value=9.7e-13  Score=98.34  Aligned_cols=57  Identities=25%  Similarity=0.445  Sum_probs=50.9

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEec-CCCcEEEEecCCcEEEEcCCCeEecc
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD-EEHWWTAQNISGEVGSIPVPYVQKYS  442 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~-~~~W~~~~~~~g~~G~~P~~~v~~~~  442 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+. +.+||.|+ .+|+.||||++||+++.
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~~~-~~g~~G~~P~~yv~~~~   62 (63)
T 3eg3_A            5 PNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQ-TKNGQGWVPSAYITPVN   62 (63)
T ss_dssp             TTEEEESSCBCCCSSSBCCBCTTCEEEEEEECTTSSEEEEE-ETTEEEEEEGGGEEESC
T ss_pred             CEEEEEcceECCCCCCccCCCCCCEEEEEEeCCCCCeEEEE-ECCCeEEEehHHeEECC
Confidence            34799999999999999999999999999965 45699998 48999999999999874

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}

Probab=99.35  E-value=9.5e-13  Score=99.98  Aligned_cols=58  Identities=40%  Similarity=0.759  Sum_probs=54.2

Q ss_pred             ceeeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEeeCCCeeeEEecCceeecc
Q psy10852        110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS  167 (563)
Q Consensus       110 ~~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~~~g~~G~fP~~yv~~~~  167 (563)
                      ...++|+|+|.++.+++|+|++||+|.|+++.+++||.+++.+|+.|+||++||+.++
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   67 (68)
T 1s1n_A           10 GEEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLEPYS   67 (68)
T ss_dssp             CEEEEECSCBCCSSSSCCCBCSSEEEEECSCCSSSEEEEECSSSCEEEEESTTEEECC
T ss_pred             CCEEEEcccCCCCCCCcCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEehHHeEECc
Confidence            3568999999999999999999999999999999999999889999999999999874

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=99.35  E-value=9.4e-13  Score=101.25  Aligned_cols=57  Identities=28%  Similarity=0.665  Sum_probs=52.0

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEec--CCcE---EEEcCCCeEecc
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI--SGEV---GSIPVPYVQKYS  442 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~--~g~~---G~~P~~~v~~~~  442 (563)
                      ...++|+|+|.++.++||+|++||+|.| .+.+++||.|+..  +|+.   ||||++||+++.
T Consensus        10 ~~~~~alydy~~~~~~eLs~~~Gd~i~v-~~~~~~Ww~g~~~~~~g~~~~~G~~P~~yv~~~~   71 (72)
T 2kgt_A           10 GPKYVGLWDFKSRTDEELSFRAGDVFHV-ARKEEQWWWATLLDEAGGAVAQGYVPHNYLAERE   71 (72)
T ss_dssp             CCEEECCTTCBCSSTTSCBCCTTCCEEE-EEECSSCEEEEEECTTSCEEEEEEECTTTSEEEC
T ss_pred             CcEEEEcccCCCCCcCCcCCCCCCEEEE-eeCCCCEEEEEEcCCCCCEeCCcEEcHhHEEEcc
Confidence            4579999999999999999999999999 8888999999854  6999   999999998764

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}

Probab=99.35  E-value=1.3e-12  Score=96.27  Aligned_cols=56  Identities=27%  Similarity=0.585  Sum_probs=52.0

Q ss_pred             eeeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEeeCC-CeeeEEecCceeec
Q psy10852        111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQKY  166 (563)
Q Consensus       111 ~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~~~-g~~G~fP~~yv~~~  166 (563)
                      .+++|+|+|.++.+++|+|++||+|.|+++.+++||.+++.. |+.|+||++||+.+
T Consensus         2 ~~~~al~d~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~   58 (59)
T 1yn8_A            2 QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYI   58 (59)
T ss_dssp             EEEEECSCBCCCSTTBCCBCTTCEEEEEEEEETTEEEEECTTSSCEEEEEGGGEEEC
T ss_pred             CEEEECccCCCCCCCCcCCCCCCEEEEEEcCCCCeEEEEECCCCCEEEEehHHeEEC
Confidence            368999999999999999999999999999999999999764 89999999999876

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.35  E-value=1e-12  Score=102.59  Aligned_cols=60  Identities=32%  Similarity=0.626  Sum_probs=54.3

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecC--CcE------EEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS--GEV------GSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~--g~~------G~~P~~~v~~~~~~  444 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||+|+...  |+.      ||||++||+++...
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~~~~~~~G~~P~~yv~~~~~~   74 (77)
T 2d8j_A            7 GQYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVAEDSGP   74 (77)
T ss_dssp             CEEEEESSCBCCSSSSBCCBCTTCCEEEEECCSSSEEEEEECSSCCSSCCCCSEEEEETTTEEECCCC
T ss_pred             CCEEEEccCCCCCCCCccCCCCCCEEEEEECCCCCeEEEEECCCCCcCcccCCceEECHHHeeEcCCc
Confidence            4589999999999999999999999999999899999998654  888      99999999987653

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.35  E-value=1.3e-12  Score=98.89  Aligned_cols=58  Identities=19%  Similarity=0.385  Sum_probs=51.4

Q ss_pred             cceeeeecccCCCCCCCC-CcCCCCCEEEEEEe-cCCCeeEEeeC-CCeeeEEecCceeec
Q psy10852        109 TIEKVIAKYDFDGNDPDD-LPFKKNDILIVVSK-DEEHWWTAQNI-SGEVGSIPVPYVQKY  166 (563)
Q Consensus       109 ~~~~~~a~~d~~~~~~~e-Ls~~~Gd~i~vl~~-~~~~ww~g~~~-~g~~G~fP~~yv~~~  166 (563)
                      ...+++|+|+|.++.+++ |+|++||+|.|+.+ .+++||.|++. +|++||||+|||+.+
T Consensus         6 ~~~~~~al~dy~~~~~~e~Lsf~~Gd~i~v~~~~~~~gW~~g~~~~~g~~G~fP~~yv~~l   66 (67)
T 3rnj_A            6 GRMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRVL   66 (67)
T ss_dssp             CCCEEEESSCBCCCSCTTBCCBCTTCEEEECSSSCBTTEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CCeEEEEccccCCCCCCCCccCCCCCEEEEeeccCCCCCEEEEECCCCCEEEEEHHHeEEC
Confidence            345799999999998777 99999999999965 67899999985 899999999999876

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}

Probab=99.35  E-value=1.3e-12  Score=99.55  Aligned_cols=58  Identities=33%  Similarity=0.605  Sum_probs=54.2

Q ss_pred             ceeeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEeeCCCeeeEEecCceeecc
Q psy10852        110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS  167 (563)
Q Consensus       110 ~~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~~~g~~G~fP~~yv~~~~  167 (563)
                      ...++|+|+|.++..++|+|++||+|.|+++.+++||.|+..+|+.|+||++||++..
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   63 (69)
T 4esr_A            6 APTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVASET   63 (69)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEEETTEEEEEEGGGEEEHH
T ss_pred             cCEEEECccCCCCCcCcCCCCCCCEEEEEEecCCCeEEEEeCCCCEEEEchHHeEECc
Confidence            4579999999999999999999999999999999999999769999999999999875

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A

Probab=99.34  E-value=1.6e-12  Score=105.17  Aligned_cols=60  Identities=23%  Similarity=0.397  Sum_probs=52.8

Q ss_pred             ccceEEeecCCCCCCCCC-CeeccCCCEEEEEEeCCC-----CEEEEEe-CCeeeeecCCceEEcCCCC
Q psy10852        480 PAFARVKQVRVPNAYDKT-ALKLEIGDIIKVTKTNIN-----GQWEGEL-NGKTGHFPFTHVEFIPTNE  541 (563)
Q Consensus       480 ~~~~~~~~~y~~~~~~~~-eL~~~~gd~i~v~~~~~~-----~w~~g~~-~g~~G~~P~~~v~~~~~~~  541 (563)
                      ..+++|+++|.  +.+++ ||+|++||+|.|+.+.+.     |||.|+. +|++||||++||+.+....
T Consensus        14 ~~~~~alydy~--~~~~~~eLsf~~Gd~i~v~~~~~~~~~~~gWw~g~~~~g~~G~~P~~yv~~~~~~~   80 (92)
T 1jqq_A           14 LEFARALYDFV--PENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEIIKRRK   80 (92)
T ss_dssp             CEEEEESSBBC--CSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEEETTSCEEEEEGGGEEECCCC-
T ss_pred             CEEEEECccCC--CCCCCCCcCCCCCCEEEEEECCCCCCCCCCCeEEEeCCCCEEEEehHHeEECCCCC
Confidence            34789999998  55688 999999999999998876     9999999 7999999999999997654

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.34  E-value=1e-12  Score=104.89  Aligned_cols=54  Identities=28%  Similarity=0.386  Sum_probs=48.8

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeC-----CCCEEEEEe-CCeeeeecCCceEE
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTN-----INGQWEGEL-NGKTGHFPFTHVEF  536 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~-----~~~w~~g~~-~g~~G~~P~~~v~~  536 (563)
                      .+++|+++|.  +++++||+|++||+|.|+++.     ++|||+|+. +|++||||++||+.
T Consensus        30 ~~~~Alydy~--a~~~~ELsf~~GD~I~Vl~~~~~~~~~~gWw~g~~~~g~~G~fP~nyV~p   89 (89)
T 2rf0_A           30 PVWTAVFDYE--AAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYVAP   89 (89)
T ss_dssp             CEEEECSCBC--CSSTTBCCBCTTCEEEEEECCHHHHSSTTEEEEECTTCCEEEEEGGGEEC
T ss_pred             cEEEECCccC--CCCCCccccCCCCEEEEEeccCCcccCCCEEEEEECCCCEEEEcHHHCcC
Confidence            4789999999  555889999999999999985     799999999 89999999999973

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}

Probab=99.34  E-value=6.5e-13  Score=101.49  Aligned_cols=60  Identities=22%  Similarity=0.288  Sum_probs=50.8

Q ss_pred             ccceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEE-eCCeeeeecCCceEEcCCC
Q psy10852        480 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGE-LNGKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       480 ~~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~-~~g~~G~~P~~~v~~~~~~  540 (563)
                      +..++|+++|.++..+++||+|++||+|.|++. ++|||.|+ .+|+.||||++||+.+...
T Consensus         5 ~~~~~alydy~~~~~~~~eLsf~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~~~~~   65 (70)
T 2vkn_A            5 IYKAKALYPYDADDDDAYEISFEQNEILQVSDI-EGRWWKARRANGETGIIPSNYVQLIDGP   65 (70)
T ss_dssp             EEEEEESSCBCCCSSSTTBCCBCTTCEEEEECT-TSSEEEEECTTSCEEEEEGGGEEEEEEE
T ss_pred             CEEEEECccCCCCCCCCCcccCCCCCEEEEEEc-CCCeEEEEECCCCEEEEehHHEEECCCC
Confidence            346899999996553455999999999999986 78999997 5899999999999988654

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}

Probab=99.34  E-value=2.1e-12  Score=99.15  Aligned_cols=58  Identities=28%  Similarity=0.604  Sum_probs=53.2

Q ss_pred             ceeeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEeeCCCeeeEEecCceeeccc
Q psy10852        110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  168 (563)
Q Consensus       110 ~~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~~~g~~G~fP~~yv~~~~~  168 (563)
                      ...++|+|+|.++.+++|+|++||+|.|+++ +++||.+++.+|+.||||++||+.+..
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~~~~   64 (72)
T 2jw4_A            7 EVVVVAKFDYVAQQEQELDIKKNERLWLLDD-SKSWWRVRNSMNKTGFVPSNYVERKNS   64 (72)
T ss_dssp             CEEEECSSCCCCSSTTSCCCCTTCEEEEEEC-SSSSEEEECTTSCEEEECTTSCEECCC
T ss_pred             CeEEEECcCCCcCCCCcccCCCCCEEEEEEC-CCCEEEEEECCCCEEEEEhhHEEEcCC
Confidence            3578999999999999999999999999997 579999997799999999999998763

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A

Probab=99.34  E-value=1.8e-12  Score=98.38  Aligned_cols=58  Identities=26%  Similarity=0.693  Sum_probs=53.6

Q ss_pred             ceeeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEeeCCCeeeEEecCceeeccc
Q psy10852        110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  168 (563)
Q Consensus       110 ~~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~~~g~~G~fP~~yv~~~~~  168 (563)
                      ...++|+|+|.++.++||+|++||+|.|+++. ++||.+++.+|+.||||++||+++..
T Consensus         8 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~~g~~G~~P~~yv~~~~~   65 (68)
T 2k2m_A            8 LKWVLCNYDFQARNSSELSVKQRDVLEVLDDS-RKWWKVRDPAGQEGYVPYNILTPYPA   65 (68)
T ss_dssp             CCEEEESSCBCCCSSSBCCBCTTCEEEEEECS-SSEEEEECTTSCCEEEEGGGEEECCS
T ss_pred             CEEEEECccCCCCCCCcccCCCCCEEEEEEcC-CCeEEEEeCCCCEEEEEhhhEEEcCC
Confidence            45699999999999999999999999999986 89999998899999999999998753

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=2.7e-12  Score=102.01  Aligned_cols=58  Identities=16%  Similarity=0.098  Sum_probs=51.8

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEE-eCCeeeeecCCceEEcCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGE-LNGKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~-~~g~~G~~P~~~v~~~~~~  540 (563)
                      .+++|+++|.  +.+++||+|++||+|.|+.+.+++||.|+ .+|++||||++||+.+...
T Consensus        20 ~~~~alydy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~~~~~   78 (85)
T 2yuq_A           20 TVVIALYDYQ--TNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVEKSPN   78 (85)
T ss_dssp             CEEEESSCCC--CSCSSBCCCCBTEEEEEEECCSSSEEEEECSSSCEEEEETTTCEECCCC
T ss_pred             eEEEECcCCC--CCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCEEEEehHHeEEccCC
Confidence            4689999998  55688999999999999999889999997 5899999999999998554

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=2.3e-12  Score=104.65  Aligned_cols=61  Identities=21%  Similarity=0.435  Sum_probs=54.8

Q ss_pred             ceeeEEEeecccCCCCCCCCCCCCCEEEEEEec--C--CCcEEEEe-cCCcEEEEcCCCeEeccCC
Q psy10852        384 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--E--EHWWTAQN-ISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       384 ~~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~--~--~~W~~~~~-~~g~~G~~P~~~v~~~~~~  444 (563)
                      ....++|+|+|.++.++||+|++||+|.|+.+.  +  ++||+|++ .+|+.|+||++||+++...
T Consensus        15 ~~~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~~~~   80 (94)
T 2e5k_A           15 NHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKADEC   80 (94)
T ss_dssp             CCEEEEECSCBCCSSSSBCCBCTTCEEEECGGGCCSTTTTEEEEEESSSCCEEEEEGGGEEECCSC
T ss_pred             CCeEEEECCcCCCCCCCCcCCCCCCEEEEEECcCCCCCCCcEEEEECCCCCEEEechHHeEEcccC
Confidence            356899999999999999999999999999983  4  89999986 6899999999999988643

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens}

Probab=99.33  E-value=1.2e-12  Score=104.34  Aligned_cols=55  Identities=31%  Similarity=0.677  Sum_probs=50.8

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEe
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK  440 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~  440 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+ +++||.|++.+|+.||||++||+.
T Consensus        31 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~   85 (86)
T 2jxb_A           31 EVIVIAKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNAANRTGYVPSNYVER   85 (86)
T ss_dssp             CEEEEESSCCCCCSSSBCCCCTTEEEEEEEC-CSSEEEEECTTSCEEEEEGGGBCC
T ss_pred             ceEEEECccCCCCCCCEeccCCCCEEEEEec-CCCeEEEEECCCCEEEeehHHEEe
Confidence            4579999999999999999999999999998 679999987799999999999974

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A

Probab=99.33  E-value=8.5e-13  Score=101.96  Aligned_cols=57  Identities=37%  Similarity=0.771  Sum_probs=51.9

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEec-CCCcEEEEecCCcEEEEcCCCeEecc
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD-EEHWWTAQNISGEVGSIPVPYVQKYS  442 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~-~~~W~~~~~~~g~~G~~P~~~v~~~~  442 (563)
                      ..+++|+|+|.++.++||+|++||+|.|+.+. +.+||.|+ .+|+.||||++||+.+.
T Consensus         9 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~   66 (74)
T 1gbq_A            9 SMEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAE-LNGKDGFIPKNYIEMKP   66 (74)
T ss_dssp             -CEEEESSCBCCSSTTBCCBCTTCEEECCBCSSCSSEEEEE-ETTEEEEEEGGGEEEEC
T ss_pred             CeEEEECccCCCCCCCeeeEcCCCEEEEeEecCCCCEEEEE-ECCCEEEEehHhEEEcC
Confidence            34799999999999999999999999999988 56999998 69999999999999764

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=4.6e-12  Score=99.62  Aligned_cols=55  Identities=13%  Similarity=0.128  Sum_probs=48.9

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCC-CEEEEEe--CCeeeeecCCceEEcC
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNIN-GQWEGEL--NGKTGHFPFTHVEFIP  538 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~-~w~~g~~--~g~~G~~P~~~v~~~~  538 (563)
                      .++|+++|.  +.+++||+|++||+|.|+.+.++ +||.|+.  +|++||||++||+...
T Consensus        19 ~~~Alydy~--~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   76 (81)
T 1x6g_A           19 QCITKCEHT--RPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGALRERS   76 (81)
T ss_dssp             EEEESSCBS--SCCTTCCCBCTTCEEEEEECCCSSSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             EEEECCCCC--cCCCCCCCCCCCCEEEEEeccCCCCeEEEEeCCCCCEEEEehHHEEEcc
Confidence            688999998  55588999999999999998776 9999986  5999999999999764

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus}

Probab=99.32  E-value=3.9e-12  Score=106.38  Aligned_cols=60  Identities=30%  Similarity=0.690  Sum_probs=55.4

Q ss_pred             ceeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEe-cCCcEEEEcCCCeEeccC
Q psy10852        384 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKYSE  443 (563)
Q Consensus       384 ~~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~-~~g~~G~~P~~~v~~~~~  443 (563)
                      ....++|+|+|.++.++||+|++||+|.|+.+.+++||+|++ .+|+.||||++||+++..
T Consensus        26 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   86 (109)
T 2yt6_A           26 GVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPADS   86 (109)
T ss_dssp             SCCEEEESSCCCCSSTTSCCCCTTCEEEEEECSCTTCEEEEESSSCCEEEECTTTEEESSS
T ss_pred             CCEEEEECccCCCCCCCccCCCCCCEEEEEEccCCCcEEEEECCCCCEEEechHHcEECCc
Confidence            356899999999999999999999999999999999999986 589999999999998854

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=2.6e-12  Score=104.76  Aligned_cols=60  Identities=22%  Similarity=0.479  Sum_probs=53.1

Q ss_pred             ceeeEEEeecccCC--------CCCCCCCCCCCEEEEEEec-CCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        384 TIEKVIAKYDFDGN--------DPDDLPFKKNDILIVVSKD-EEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       384 ~~~~~~a~~~y~~~--------~~~el~~~~g~~v~v~~~~-~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ....++|+|+|.++        .++||+|++||+|.|+.+. ++|||+|+ .+|+.||||++||+.+...
T Consensus        16 ~~~~~~Alydy~~~~~~~~~~~~~~eLsf~~Gd~i~vl~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~~   84 (97)
T 2csq_A           16 PARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGE-TCARLGLIPCNMVSEIQAD   84 (97)
T ss_dssp             CCEEEECSSCBCTTTTSSCHHHHTTBCCBCTTCEEEEEEEECTTCEEEEE-ETTEEEEEETTTSEECCCC
T ss_pred             CceEEEEccccCCCcccccCCCCCCccCCCCCCEEEEEEecCCCCeEEEE-ECCcEEEEehHHeEECCCC
Confidence            35679999999998        7999999999999999764 57899998 5899999999999998754

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens}

Probab=99.32  E-value=4.1e-13  Score=107.98  Aligned_cols=59  Identities=25%  Similarity=0.582  Sum_probs=54.9

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ..+++|+|+|.++.++||+|++||+|.|+.+.+++||+|+ .+|+.||||++||+.+...
T Consensus        18 ~~~~~Alydy~a~~~~eLsf~~Gd~i~V~~~~~~gWw~g~-~~g~~G~fPsnyV~~~~~~   76 (92)
T 2o2o_A           18 RRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGV-LNGKTGMFPSNFIKELSGE   76 (92)
T ss_dssp             SCEEEECSCBCCCSSSCCCBCSSCEEECCCGGGSSCBCCE-ETTEECCBCSSSEECCSSC
T ss_pred             CeEEEEccccCCCCCccccccCCCEEEEeEecCCCEEEEE-ECCeEEEeehHHEEECCCC
Confidence            4589999999999999999999999999999889999998 6999999999999988664

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A

Probab=99.32  E-value=1e-12  Score=108.61  Aligned_cols=58  Identities=26%  Similarity=0.308  Sum_probs=49.9

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEe-CCCC--EEEEEeC--------CeeeeecCCceEEcCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKT-NING--QWEGELN--------GKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~-~~~~--w~~g~~~--------g~~G~~P~~~v~~~~~~  540 (563)
                      ..++|+++|.  +++++||+|++||+|.|+.+ .+.|  ||.|+++        |++||||+|||+.+...
T Consensus        23 ~~~~Alydy~--a~~~~ELsf~~GDiI~Vl~k~~~~g~dWW~G~~~~~~~~~~~g~~G~fPsnYV~~~~~~   91 (108)
T 1i1j_A           23 SMAVALQDYM--APDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQTL   91 (108)
T ss_dssp             EEEEESSCBC--CSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEEEEC
T ss_pred             eEEEECCccC--CCCCCccccCCCCEEEEEEecCCCCCCEEEEEECCccccCCCCCEEEEchhHEEEcccc
Confidence            3688999998  55689999999999999998 3444  9999998        99999999999988643

>2m0y_A Dedicator of cytokinesis protein 1; apoptosis; NMR {Mus musculus}

Probab=99.32  E-value=1.4e-12  Score=100.94  Aligned_cols=58  Identities=19%  Similarity=0.463  Sum_probs=52.5

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEec--CCcEEEEcCCCeEeccC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI--SGEVGSIPVPYVQKYSE  443 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~--~g~~G~~P~~~v~~~~~  443 (563)
                      ...++|+|+|.++.++||+|++||+|.|+++. +|||.|+..  +|+.|+||++||+....
T Consensus        11 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~W~~g~~~~~~g~~G~~P~~yv~~~~~   70 (74)
T 2m0y_A           11 EKYGVAFYNYDARGADELSLQIGDTVHILETY-EGWYRGYTLRKKSKKGIFPASYIHLKEA   70 (74)
T ss_dssp             CSCEEECSEECCCSSSBCCEETTEEEEEEEBS-SSCEEEEESSCSSCCEEECGGGEEECCC
T ss_pred             CeEEEEceeeCCCCcCcccCCCCCEEEEEEcC-CCeEEEEECCCCCCEEEEehHHEEEecc
Confidence            45799999999999999999999999999986 789999864  69999999999997754

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A

Probab=99.32  E-value=3.1e-12  Score=102.09  Aligned_cols=58  Identities=31%  Similarity=0.660  Sum_probs=53.2

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEe-cCCcEEEEcCCCeEeccC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKYSE  443 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~-~~g~~G~~P~~~v~~~~~  443 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+. ++||+|+. .+|+.||||++||+.+..
T Consensus        25 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~~~g~~G~~P~~yv~~~~~   83 (86)
T 2oi3_A           25 DIIVVALYDYEAIHHEDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARVDS   83 (86)
T ss_dssp             SEEEEESSCCCCSSSSCCCCCTTCEEEEEEES-SSEEEEEETTTCCEEEEEGGGEEEGGG
T ss_pred             CcEEEECccCCCCCCCcCcCCCCCEEEEEEcC-CCeEEEEECCCCCEEEEehHHcEEccc
Confidence            46899999999999999999999999999998 69999986 389999999999998754

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus}

Probab=99.32  E-value=2.2e-12  Score=104.47  Aligned_cols=61  Identities=21%  Similarity=0.333  Sum_probs=53.3

Q ss_pred             ccceEEeecCCCCCCCCCCeeccCCCEEEEEEeCC----CCEEEEEeCCe-eeeecCCceEEcCCCCC
Q psy10852        480 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI----NGQWEGELNGK-TGHFPFTHVEFIPTNET  542 (563)
Q Consensus       480 ~~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~----~~w~~g~~~g~-~G~~P~~~v~~~~~~~~  542 (563)
                      ...++|+++|.  +.+++||+|++||+|.|+.+.+    +|||.|+++|+ +||||++||+.+.....
T Consensus        17 ~~~~~alydy~--a~~~~eLsf~~Gd~i~v~~~~~~~~~~gWw~g~~~~~~~G~~P~~yv~~~~~~~~   82 (93)
T 1wxu_A           17 HVVARAEYDFV--AVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKILGKRRG   82 (93)
T ss_dssp             BBCEEESSCBC--CSSSSBCCBCSSCBCEECCTTTSCSCSSCEEEESSSSSCEEECSTTEEECCCBCC
T ss_pred             CEEEEECccCC--CCCCCccCcCCCCEEEEEECCCCCCCCCcEEEEeCCcCEEEEehHHEEEcCCccc
Confidence            34689999998  5568899999999999999887    69999999987 99999999999976544

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.31  E-value=2.4e-12  Score=100.34  Aligned_cols=57  Identities=21%  Similarity=0.200  Sum_probs=51.6

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeC---Cee------eeecCCceEEcCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELN---GKT------GHFPFTHVEFIPT  539 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~---g~~------G~~P~~~v~~~~~  539 (563)
                      .+++|+++|.  +..++||+|++||+|.|+++.++|||.|+..   |+.      ||||++||+.++.
T Consensus         8 ~~~~alydy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~~~~~~~G~~P~~yv~~~~~   73 (77)
T 2d8j_A            8 QYFVALFDYQ--ARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVAEDSG   73 (77)
T ss_dssp             EEEEESSCBC--CSSSSBCCBCTTCCEEEEECCSSSEEEEEECSSCCSSCCCCSEEEEETTTEEECCC
T ss_pred             CEEEEccCCC--CCCCCccCCCCCCEEEEEECCCCCeEEEEECCCCCcCcccCCceEECHHHeeEcCC
Confidence            3789999999  5558899999999999999989999999998   888      9999999998864

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=2.5e-12  Score=97.60  Aligned_cols=57  Identities=26%  Similarity=0.567  Sum_probs=52.8

Q ss_pred             ceeeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEeeCCCeeeEEecCceeecc
Q psy10852        110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS  167 (563)
Q Consensus       110 ~~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~~~g~~G~fP~~yv~~~~  167 (563)
                      ...++|+|+|.++.++||+|++||+|.|+++. ++||.+++.+|+.||||++||+.+.
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~~g~~G~~P~~yv~~~~   63 (68)
T 1wxb_A            7 GKYVKILYDFTARNANELSVLKDEVLEVLEDG-RQWWKLRSRSGQAGYVPCNILGEAS   63 (68)
T ss_dssp             CCCEECSSCBCCSSSSBCCBCTTCEEEEEECS-SSEEEEECTTSCEEEEETTTCCBCC
T ss_pred             CEEEEECccCCCCCCCccCCCCCCEEEEEEcC-CCEEEEEECCCCEEEEEHHHeEECC
Confidence            34689999999999999999999999999985 8999999889999999999999875

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A

Probab=99.31  E-value=1.7e-12  Score=107.27  Aligned_cols=61  Identities=20%  Similarity=0.287  Sum_probs=52.4

Q ss_pred             ceeeEEEeecccCCCCCCCCCCCCCEEEEEEec-CCC--cEEEEecC-------CcEEEEcCCCeEeccCC
Q psy10852        384 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD-EEH--WWTAQNIS-------GEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       384 ~~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~-~~~--W~~~~~~~-------g~~G~~P~~~v~~~~~~  444 (563)
                      ....++|+|+|.++.++||+|++||+|.|+.+. +.|  ||.|+..+       |+.||||+|||+.+...
T Consensus        21 ~~~~~~Alydy~a~~~~ELsf~~GDiI~Vl~k~~~~g~dWW~G~~~~~~~~~~~g~~G~fPsnYV~~~~~~   91 (108)
T 1i1j_A           21 PISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQTL   91 (108)
T ss_dssp             CSEEEEESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEEEEC
T ss_pred             eeeEEEECCccCCCCCCccccCCCCEEEEEEecCCCCCCEEEEEECCccccCCCCCEEEEchhHEEEcccc
Confidence            356799999999999999999999999999983 344  99998542       89999999999987643

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=3.1e-12  Score=103.84  Aligned_cols=60  Identities=20%  Similarity=0.184  Sum_probs=52.4

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEe--CC--CCEEEEE--eCCeeeeecCCceEEcCCCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKT--NI--NGQWEGE--LNGKTGHFPFTHVEFIPTNET  542 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~--~~--~~w~~g~--~~g~~G~~P~~~v~~~~~~~~  542 (563)
                      .+++|+++|.  +++++||+|++||+|.|+++  .+  +|||.|+  .+|++||||++||+.+.+...
T Consensus        17 ~~~~Alydy~--~~~~~eLs~~~Gd~i~v~~~~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~~~~~~   82 (94)
T 2e5k_A           17 ETLQVIYPYT--PQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKADECST   82 (94)
T ss_dssp             EEEEECSCBC--CSSSSBCCBCTTCEEEECGGGCCSTTTTEEEEEESSSCCEEEEEGGGEEECCSCCC
T ss_pred             eEEEECCcCC--CCCCCCcCCCCCCEEEEEECcCCCCCCCcEEEEECCCCCEEEechHHeEEcccCCC
Confidence            4789999999  55589999999999999998  34  8999999  789999999999999975443

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=4e-12  Score=99.42  Aligned_cols=56  Identities=18%  Similarity=0.242  Sum_probs=49.2

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEe--CCeeeeecCCceEEcCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIPT  539 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~--~g~~G~~P~~~v~~~~~  539 (563)
                      .+++|+++|.  +++++||+|++||+|.|++ .+++||+|+.  +|++||||++||+.+..
T Consensus        18 ~~~~Alydy~--a~~~~eLs~~~Gd~i~v~~-~~~~Ww~~~~~~~g~~G~~P~~yv~~~~~   75 (79)
T 2cud_A           18 DFLAVLSDYP--SPDISPPIFRRGEKLRVIS-DEGGWWKAISLSTGRESYIPGICVARVSG   75 (79)
T ss_dssp             CEEEESSCSS--CTTTSCCSSCTTCEEEEEE-EETTEEEEEETTTCCEEEEEGGGEEEECC
T ss_pred             eEEEEccCCC--CCCCCcCCCCCCCEEEEEe-cCCCeEEEEECCCCCEEEeeHHHeEEccC
Confidence            4689999998  5568899999999999999 4689999997  49999999999998753

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} SCOP: b.34.2.0 PDB: 2kt1_A

Probab=99.31  E-value=1.5e-12  Score=104.49  Aligned_cols=60  Identities=25%  Similarity=0.371  Sum_probs=51.7

Q ss_pred             ceeeEEEeecccCCCCCCCCCCCCCEEEEEEe-------------cC--CCcEEEEec-CCcEEEEcCCCeEeccC
Q psy10852        384 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSK-------------DE--EHWWTAQNI-SGEVGSIPVPYVQKYSE  443 (563)
Q Consensus       384 ~~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~-------------~~--~~W~~~~~~-~g~~G~~P~~~v~~~~~  443 (563)
                      ....++|+|+|.++.++||+|++||+|.|+.+             .+  .|||.|++. +|+.||||++||+.+..
T Consensus        10 ~~~~~~Alydy~a~~~~ELsf~~GD~I~V~~~~~~~l~~~~~~~~~~~~~gW~~G~~~~~g~~G~fP~nyVe~i~~   85 (90)
T 3o5z_A           10 EGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGDFPGTYVEFLGP   85 (90)
T ss_dssp             SEEEEEECSCBCCCSTTBCCBCTTCEEEEEHHHHHHTTCCTTGGGCHHHHCEEEEEETTTCCEEEEEGGGEEEEEE
T ss_pred             CCcEEEEeeeECCCCCCccCCcCCCEEEEEeccccccccccccccCCCCCCceEEEeCCCCCEEEeehHHEEEecc
Confidence            35689999999999999999999999999953             22  389999864 69999999999998864

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus}

Probab=99.30  E-value=5.4e-12  Score=110.13  Aligned_cols=59  Identities=34%  Similarity=0.509  Sum_probs=52.7

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeC-CCCEEEEEeCCeeeeecCCceEEcCCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTN-INGQWEGELNGKTGHFPFTHVEFIPTNE  541 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~-~~~w~~g~~~g~~G~~P~~~v~~~~~~~  541 (563)
                      .+++|+++|.  +++++||+|++||+|.|+++. ++|||.|+++|++||||++||+.+....
T Consensus         6 ~~~~Alydy~--a~~~~ELsf~~Gd~i~Vl~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~~   65 (142)
T 2kbt_A            6 GTAKARYDFC--ARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDYSEY   65 (142)
T ss_dssp             CEEEESSCCC--CSSSSBCCCCTTCEEEEEECCCSSSEEEEEETTEEEEEETTSEEESSCCC
T ss_pred             eEEEECCccC--CCCCCcCCCCCCCEEEEEEecCCCCeEEEEECCeeEEechHHEEEccccc
Confidence            3689999998  556899999999999999985 7999999999999999999999996643

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A

Probab=99.30  E-value=9.9e-13  Score=108.65  Aligned_cols=60  Identities=17%  Similarity=0.126  Sum_probs=52.6

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCee---eeecCCceEEcCCCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKT---GHFPFTHVEFIPTNET  542 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~---G~~P~~~v~~~~~~~~  542 (563)
                      .+++|+|+|.  +++++||+|++||+|.|+.+.++|||.|+++|+.   |+||++||+.+.....
T Consensus         6 ~~~~Alydy~--a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~~~g~~g~~G~fPsnYV~~~~~~~~   68 (108)
T 2rqv_A            6 LYAIVLYDFK--AEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSIIDIATG   68 (108)
T ss_dssp             CCEEESSCCC--CCSSSBCCCCSSEEECCCCEETTTEEEECCSSSSCCCEEEESTTCBCCCSSSS
T ss_pred             eEEEECCCcC--CCCCCcCCcCCCCEEEEeEecCCCEEEEEECCccCCeeEeecceEEEecCCCC
Confidence            3689999998  5569999999999999999889999999998777   9999999998865443

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=99.29  E-value=2.4e-12  Score=98.92  Aligned_cols=54  Identities=17%  Similarity=0.135  Sum_probs=49.2

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEe---CCee---eeecCCceEEcC
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL---NGKT---GHFPFTHVEFIP  538 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~---~g~~---G~~P~~~v~~~~  538 (563)
                      +++|+++|.  +.+++||+|++||+|.| .+.++|||.|+.   +|+.   ||||++||+.++
T Consensus        12 ~~~alydy~--~~~~~eLs~~~Gd~i~v-~~~~~~Ww~g~~~~~~g~~~~~G~~P~~yv~~~~   71 (72)
T 2kgt_A           12 KYVGLWDFK--SRTDEELSFRAGDVFHV-ARKEEQWWWATLLDEAGGAVAQGYVPHNYLAERE   71 (72)
T ss_dssp             EEECCTTCB--CSSTTSCBCCTTCCEEE-EEECSSCEEEEEECTTSCEEEEEEECTTTSEEEC
T ss_pred             EEEEcccCC--CCCcCCcCCCCCCEEEE-eeCCCCEEEEEEcCCCCCEeCCcEEcHhHEEEcc
Confidence            689999998  55588999999999999 888899999999   8999   999999999764

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A

Probab=99.27  E-value=2e-12  Score=102.35  Aligned_cols=59  Identities=29%  Similarity=0.454  Sum_probs=51.7

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEe---------------cCCCcEEEEec-CCcEEEEcCCCeEeccC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSK---------------DEEHWWTAQNI-SGEVGSIPVPYVQKYSE  443 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~---------------~~~~W~~~~~~-~g~~G~~P~~~v~~~~~  443 (563)
                      ..+|+|+|+|.++.++||+|++||+|.|+.+               .+.|||.|++. +|+.|+||++||+.+..
T Consensus         5 ~~~~~Alydy~~~~~~eLs~~~Gd~I~V~~~~~~~~~~~~~~e~~~~~~gW~~g~~~~~g~~G~fP~~yV~~~~~   79 (83)
T 3i5r_A            5 GYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYIGR   79 (83)
T ss_dssp             EEEEEECSCBCCCSTTBCCBCTTCEEEEEHHHHHHHTCTTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEEEE
T ss_pred             CcEEEEccccCCCCCCccccCCCCEEEEeeccccccccccccccCCCCCccEEEEeCCCCCEEEEehHHEEECCc
Confidence            4589999999999999999999999999965               23499999765 59999999999998754

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A

Probab=99.27  E-value=1.4e-12  Score=107.79  Aligned_cols=58  Identities=24%  Similarity=0.463  Sum_probs=51.8

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcE---EEEcCCCeEeccCC
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEV---GSIPVPYVQKYSEG  444 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~---G~~P~~~v~~~~~~  444 (563)
                      .+++|+|+|.++.++||+|++||+|.|+.+.+++||.|+ .+|+.   |+||++||+.+...
T Consensus         6 ~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~-~~g~~g~~G~fPsnYV~~~~~~   66 (108)
T 2rqv_A            6 LYAIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAK-PIGRLGGPGLVPVGFVSIIDIA   66 (108)
T ss_dssp             CCEEESSCCCCCSSSBCCCCSSEEECCCCEETTTEEEEC-CSSSSCCCEEEESTTCBCCCSS
T ss_pred             eEEEECCCcCCCCCCcCCcCCCCEEEEeEecCCCEEEEE-ECCccCCeeEeecceEEEecCC
Confidence            469999999999999999999999999999999999997 45555   99999999987543

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A

Probab=99.27  E-value=3.5e-13  Score=103.29  Aligned_cols=60  Identities=23%  Similarity=0.292  Sum_probs=52.7

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeee-eecCCceEEcCCCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTG-HFPFTHVEFIPTNET  542 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G-~~P~~~v~~~~~~~~  542 (563)
                      .+++|+++|.  +++++||+|++||+|.|+.+.++|||.|+++|+.| |||++||+.+.....
T Consensus         7 ~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~gG~~P~~yv~~~~~~~~   67 (71)
T 1hsq_A            7 CAVKALFDYK--AQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVNPEG   67 (71)
T ss_dssp             SCCCCSSCCC--CSSSSSCCCCTTCCCBSCCCBTTTEECCBCSSSCSCCEETTTCCSCSCCCC
T ss_pred             eEEEECCCCC--cCCCCccCCCCCCEEEEEEecCCCEEEEEECCeEEeEEChHHcEECCCccc
Confidence            3688999998  55588999999999999999899999999999887 999999998876543

>2m0y_A Dedicator of cytokinesis protein 1; apoptosis; NMR {Mus musculus}

Probab=99.27  E-value=4.8e-12  Score=97.85  Aligned_cols=57  Identities=23%  Similarity=0.335  Sum_probs=50.5

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEe---CCeeeeecCCceEEcCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL---NGKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~---~g~~G~~P~~~v~~~~~~  540 (563)
                      .+++|+++|.  +.+++||+|++||+|.|+++. +|||.|+.   +|++||||++||+.++..
T Consensus        12 ~~~~al~dy~--~~~~~eLs~~~Gd~i~v~~~~-~~W~~g~~~~~~g~~G~~P~~yv~~~~~~   71 (74)
T 2m0y_A           12 KYGVAFYNYD--ARGADELSLQIGDTVHILETY-EGWYRGYTLRKKSKKGIFPASYIHLKEAI   71 (74)
T ss_dssp             SCEEECSEEC--CCSSSBCCEETTEEEEEEEBS-SSCEEEEESSCSSCCEEECGGGEEECCCC
T ss_pred             eEEEEceeeC--CCCcCcccCCCCCEEEEEEcC-CCeEEEEECCCCCCEEEEehHHEEEeccc
Confidence            4789999999  555889999999999999985 79999998   799999999999987543

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=8.3e-12  Score=95.31  Aligned_cols=59  Identities=20%  Similarity=0.467  Sum_probs=52.9

Q ss_pred             ceeeeecccCCCCCCCCCcCCCCCEEEEEEecC-CCeeEEeeCCCeeeEEecCceeeccc
Q psy10852        110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE-EHWWTAQNISGEVGSIPVPYVQKYSE  168 (563)
Q Consensus       110 ~~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~-~~ww~g~~~~g~~G~fP~~yv~~~~~  168 (563)
                      ..+++|+|+|.++.++||+|++||+|.|+++.+ ++||.+++.+|+.||||++||+....
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~vl~~~~~~gW~~~~~~~g~~G~~P~~yv~~~~~   66 (70)
T 2ct4_A            7 GGHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYLRVTSG   66 (70)
T ss_dssp             SCEEEESSCBCCCSTTCCCBCTTCEEEEEECCSSSCEEEEECSSSCEEEEEGGGEEECCC
T ss_pred             CCEEEEcccCCCCCCCcCCCCCCCEEEEEeccCCCCeEEEEeCCCCEEEEEhHHeEEcCC
Confidence            346999999999999999999999999999875 56999997779999999999998753

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B

Probab=99.27  E-value=2.9e-12  Score=107.53  Aligned_cols=57  Identities=23%  Similarity=0.246  Sum_probs=49.9

Q ss_pred             ccceEEeecCCCCCCCCCCeeccCCCEEEEEE-----eCCCCEEEEEeC----------CeeeeecCCceEEcC
Q psy10852        480 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTK-----TNINGQWEGELN----------GKTGHFPFTHVEFIP  538 (563)
Q Consensus       480 ~~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~-----~~~~~w~~g~~~----------g~~G~~P~~~v~~~~  538 (563)
                      ..+++|+++|.  +.+++||+|++||+|.|++     ..++|||.|+..          |++||||++||+.|.
T Consensus        44 ~~~~~Alydy~--a~~~dELsf~~GDiI~Vl~~~~~~~~~~gWw~G~~~~t~~~~~~~~g~~G~fPsnyV~~l~  115 (115)
T 1bb9_A           44 MFKVQAQHDYT--ATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERVQ  115 (115)
T ss_dssp             CEEEEESSCBC--CSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEEC
T ss_pred             ceEEEECCccC--CCCCCccCcCCCCEEEEeeccCCcccCCCeEEEEeCCCcccccccCCCEEEechHHEEECc
Confidence            34689999998  5568999999999999999     778999999763          899999999999873

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus}

Probab=99.27  E-value=4.4e-12  Score=102.67  Aligned_cols=59  Identities=27%  Similarity=0.544  Sum_probs=52.8

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecC----CCcEEEEecCCc-EEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE----EHWWTAQNISGE-VGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~----~~W~~~~~~~g~-~G~~P~~~v~~~~~~  444 (563)
                      ...++|||+|.++.++||+|++||+|.|+.+.+    ++||+|+ .+++ .||||++||+.+...
T Consensus        17 ~~~~~alydy~a~~~~eLsf~~Gd~i~v~~~~~~~~~~gWw~g~-~~~~~~G~~P~~yv~~~~~~   80 (93)
T 1wxu_A           17 HVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLAS-LDGQTTGLIPANYVKILGKR   80 (93)
T ss_dssp             BBCEEESSCBCCSSSSBCCBCSSCBCEECCTTTSCSCSSCEEEE-SSSSSCEEECSTTEEECCCB
T ss_pred             CEEEEECccCCCCCCCccCcCCCCEEEEEECCCCCCCCCcEEEE-eCCcCEEEEehHHEEEcCCc
Confidence            457999999999999999999999999999987    6999998 5555 999999999988764

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A

Probab=99.27  E-value=1.7e-13  Score=106.93  Aligned_cols=57  Identities=32%  Similarity=0.669  Sum_probs=52.5

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEec
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY  441 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~  441 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||.|++.+|+.||||++||++.
T Consensus        20 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~~   76 (77)
T 1awj_A           20 ETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVEK   76 (77)
T ss_dssp             SSCCCCCCCBCCCCTTSCCBCSSSCCSCCCTTSSSBCCCCCSSSCCCCCBSTTCCCC
T ss_pred             ceEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCCEEEEECCCCEEEEehHHEEEc
Confidence            357999999999999999999999999999988999999866899999999999764

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1

Probab=99.27  E-value=8.6e-12  Score=92.93  Aligned_cols=45  Identities=29%  Similarity=0.773  Sum_probs=41.5

Q ss_pred             CCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccC
Q psy10852        398 DPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  443 (563)
Q Consensus       398 ~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~  443 (563)
                      .++||+|++||+|.|+.+.+++||.|+ .+|+.||||++||+.+.+
T Consensus         2 ~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~   46 (63)
T 1tuc_A            2 GPREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKKLDS   46 (63)
T ss_dssp             CCCCCCBCTTCEEEEEECCSSSEEEEE-ETTEEEEEEGGGEEECSC
T ss_pred             CccccCCCCCCEEEEEEecCCCEEEEE-ECCcEEEEeHHHEEEcCC
Confidence            468999999999999999999999997 799999999999998854

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} SCOP: b.34.2.0 PDB: 2kt1_A

Probab=99.27  E-value=2.7e-12  Score=103.01  Aligned_cols=59  Identities=25%  Similarity=0.218  Sum_probs=49.5

Q ss_pred             ccceEEeecCCCCCCCCCCeeccCCCEEEEEEe-------------CCC--CEEEEEe--CCeeeeecCCceEEcCCC
Q psy10852        480 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKT-------------NIN--GQWEGEL--NGKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       480 ~~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~-------------~~~--~w~~g~~--~g~~G~~P~~~v~~~~~~  540 (563)
                      ...++|+|+|.  +++++||+|++||+|.|+++             ..+  |||.|+.  +|++||||++||+.+...
T Consensus        11 ~~~~~Alydy~--a~~~~ELsf~~GD~I~V~~~~~~~l~~~~~~~~~~~~~gW~~G~~~~~g~~G~fP~nyVe~i~~~   86 (90)
T 3o5z_A           11 GFQYRALYPFR--RERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGDFPGTYVEFLGPV   86 (90)
T ss_dssp             EEEEEECSCBC--CCSTTBCCBCTTCEEEEEHHHHHHTTCCTTGGGCHHHHCEEEEEETTTCCEEEEEGGGEEEEEEE
T ss_pred             CcEEEEeeeEC--CCCCCccCCcCCCEEEEEeccccccccccccccCCCCCCceEEEeCCCCCEEEeehHHEEEeccc
Confidence            44689999999  55699999999999999853             233  9999987  699999999999998653

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A

Probab=99.26  E-value=5.1e-13  Score=104.14  Aligned_cols=54  Identities=15%  Similarity=0.087  Sum_probs=48.9

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEe-CCeeeeecCCceEE
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL-NGKTGHFPFTHVEF  536 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~-~g~~G~~P~~~v~~  536 (563)
                      .+++|+++|.  +.+.+||+|++||+|.|+++.++|||.|+. +|++||||++||+.
T Consensus        21 ~~~~alydy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~   75 (77)
T 1awj_A           21 TLVIALYDYQ--TNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVE   75 (77)
T ss_dssp             SCCCCCCCBC--CCCTTSCCBCSSSCCSCCCTTSSSBCCCCCSSSCCCCCBSTTCCC
T ss_pred             eEEEECccCC--CCCcCCcCCCCCCEEEEEEecCCCCEEEEECCCCEEEEehHHEEE
Confidence            4689999999  556889999999999999998899999985 89999999999975

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens}

Probab=99.26  E-value=7.4e-12  Score=105.84  Aligned_cols=56  Identities=20%  Similarity=0.289  Sum_probs=49.8

Q ss_pred             ccceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEe---CCeeeeecCCceEEcC
Q psy10852        480 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL---NGKTGHFPFTHVEFIP  538 (563)
Q Consensus       480 ~~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~---~g~~G~~P~~~v~~~~  538 (563)
                      ..+++|+++|.  ++.++||+|++||+|.|+++. +|||+|++   +|++||||++||++++
T Consensus        59 ~~~~~Alydy~--a~~~~eLsf~~Gd~i~vl~~~-~gWw~g~~~~~~g~~G~fP~nyV~~~~  117 (119)
T 2rqr_A           59 ERHGVAIYNFQ--GSGAPQLSLQIGDVVRIQETC-GDWYRGYLIKHKMLQGIFPKSFIHIKE  117 (119)
T ss_dssp             CEEEEBCSCBC--CCSTTBCCBCTTCEEEEEEEE-TTEEEEEESSCTTCEEEEEGGGBCCCC
T ss_pred             ceEEEEccccC--CCCCCcccCcCCCEEEEEEcC-CCEEEEEECCCCCCEEEeChhHEEEec
Confidence            35788999998  556899999999999999986 69999999   8999999999998764

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus}

Probab=99.26  E-value=4.6e-12  Score=107.36  Aligned_cols=59  Identities=22%  Similarity=0.408  Sum_probs=54.0

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEe--cCCcEEEEcCCCeEeccCC
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN--ISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~--~~g~~G~~P~~~v~~~~~~  444 (563)
                      ..++|+|+|.++.++||+|++||+|.|+.+.+++||.|+.  .+|+.||||++||+.+...
T Consensus         4 ~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~~~~~~g~~G~~P~nyv~~~~~~   64 (120)
T 2kym_A            4 LFAVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRIIDLM   64 (120)
T ss_dssp             CEEEECSCBCCCSTTCCCBCTTCEEEEEEEETTTEEEEEESSSCSCCCCEEGGGEEEECSS
T ss_pred             EEEEEcccCCCCCCCccCCCCCCEEEEEEecCCCEEEEEECCCCCCEEEEchHHEEEccCC
Confidence            3689999999999999999999999999999999999986  5789999999999988643

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}

Probab=99.26  E-value=4.7e-12  Score=98.53  Aligned_cols=73  Identities=22%  Similarity=0.438  Sum_probs=60.0

Q ss_pred             CCCCCCCcCCCCCEEEEEEecCCCeeEEeeCCCeeeEEecCceeecccccccccccccccCCCCCCCCCCCCCccccccc
Q psy10852        121 GNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHL  200 (563)
Q Consensus       121 ~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~~~g~~G~fP~~yv~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  200 (563)
                      ++..+||+|++||+|.|+++.+++||.|+ .+|+.||||++||+.+...                               
T Consensus         2 a~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~~~~-------------------------------   49 (77)
T 2jmc_A            2 AMGPREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKKLDSG-------------------------------   49 (77)
T ss_dssp             CSSSCCCCCCTTCEEECCCCCCSSCCCEE-ETTEEECCCGGGEEECCCS-------------------------------
T ss_pred             CcCCCccCCCCCCEEEEEEecCCCEEEEE-ECCcEEEEEeeEEEEcCCC-------------------------------
Confidence            46789999999999999999999999997 8899999999999988531                               


Q ss_pred             cccCccceeeeeccccCCCCCCceeeccC
Q psy10852        201 EVKLPAFARVKQVRVPNAYDKTALKLEIG  229 (563)
Q Consensus       201 ~~~~p~~~~~~~~~~~~a~~~~eLsf~~G  229 (563)
                          .....+.+.|.+++..++||+|.+.
T Consensus        50 ----~~~~~~~alydy~a~~~dElsf~~~   74 (77)
T 2jmc_A           50 ----TGKELVLALYDYQESGDNAPSYSPP   74 (77)
T ss_dssp             ----SCCCEEEESSCCCCSSCCCCCSCCC
T ss_pred             ----CCCceEEECCCcCCCCCCccccCCC
Confidence                0113455566668889999999863

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens}

Probab=99.25  E-value=6.3e-12  Score=100.03  Aligned_cols=54  Identities=31%  Similarity=0.706  Sum_probs=50.6

Q ss_pred             eeeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEeeCCCeeeEEecCceee
Q psy10852        111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK  165 (563)
Q Consensus       111 ~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~~~g~~G~fP~~yv~~  165 (563)
                      ..++|+|||.++..+||+|++||+|.|+++ +++||.|++.+|+.|+||++||++
T Consensus        32 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~   85 (86)
T 2jxb_A           32 VIVIAKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNAANRTGYVPSNYVER   85 (86)
T ss_dssp             EEEEESSCCCCCSSSBCCCCTTEEEEEEEC-CSSEEEEECTTSCEEEEEGGGBCC
T ss_pred             eEEEECccCCCCCCCEeccCCCCEEEEEec-CCCeEEEEECCCCEEEeehHHEEe
Confidence            569999999999999999999999999998 679999998899999999999974

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens}

Probab=99.25  E-value=9e-12  Score=100.23  Aligned_cols=58  Identities=36%  Similarity=0.743  Sum_probs=52.0

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEe-cCCcEEEEcCCCeEeccCC
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~-~~g~~G~~P~~~v~~~~~~  444 (563)
                      ..++|+|+|.++.++||+|.+||+|.|+.+ +++||.|+. .+|+.||||++||+++...
T Consensus         4 ~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   62 (90)
T 3reb_B            4 IIVVALYDYVSWSPDDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVDSG   62 (90)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEC-SSSEEEEEETTTCCEEEEEGGGEEEECC-
T ss_pred             EEEEECCccCcCCcCcCCCCCCCEEEEEEe-CCCEEEEEECCCCCEEEEehhheEECCCC
Confidence            368999999999999999999999999998 578999986 4899999999999988653

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus}

Probab=99.25  E-value=9.6e-12  Score=108.57  Aligned_cols=59  Identities=31%  Similarity=0.684  Sum_probs=54.1

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEec-CCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD-EEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~-~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+. ++|||.|+ .+|+.||||++||+.+...
T Consensus         5 ~~~~~Alydy~a~~~~ELsf~~Gd~i~Vl~~~~~~gWw~g~-~~g~~G~fP~~yv~~~~~~   64 (142)
T 2kbt_A            5 FGTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGE-IYGRIGWFPSNYVEEDYSE   64 (142)
T ss_dssp             CCEEEESSCCCCSSSSBCCCCTTCEEEEEECCCSSSEEEEE-ETTEEEEEETTSEEESSCC
T ss_pred             CeEEEECCccCCCCCCcCCCCCCCEEEEEEecCCCCeEEEE-ECCeeEEechHHEEEcccc
Confidence            45799999999999999999999999999985 78999998 6999999999999988654

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A

Probab=99.23  E-value=5.5e-13  Score=102.23  Aligned_cols=59  Identities=29%  Similarity=0.531  Sum_probs=52.5

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEE-EEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVG-SIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G-~~P~~~v~~~~~~  444 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||+|+ .+|+.| |||++||+.+...
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~gG~~P~~yv~~~~~~   65 (71)
T 1hsq_A            6 KCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGD-YGGKKQLWFPSNYVEEMVNP   65 (71)
T ss_dssp             SSCCCCSSCCCCSSSSSCCCCTTCCCBSCCCBTTTEECCB-CSSSCSCCEETTTCCSCSCC
T ss_pred             CeEEEECCCCCcCCCCccCCCCCCEEEEEEecCCCEEEEE-ECCeEEeEEChHHcEECCCc
Confidence            3478999999999999999999999999999999999998 567776 9999999987543

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus}

Probab=99.23  E-value=9e-12  Score=105.55  Aligned_cols=60  Identities=17%  Similarity=0.128  Sum_probs=52.5

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEe---CCeeeeecCCceEEcCCCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL---NGKTGHFPFTHVEFIPTNET  542 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~---~g~~G~~P~~~v~~~~~~~~  542 (563)
                      .+++|+|+|.  +.+++||+|++||+|.|+.+.++|||.|+.   +|+.||||++||+.++....
T Consensus         4 ~~~~Alydy~--a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~~~~~~g~~G~~P~nyv~~~~~~~~   66 (120)
T 2kym_A            4 LFAVTLYEFK--AERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRIIDLMDP   66 (120)
T ss_dssp             CEEEECSCBC--CCSTTCCCBCTTCEEEEEEEETTTEEEEEESSSCSCCCCEEGGGEEEECSSCT
T ss_pred             EEEEEcccCC--CCCCCccCCCCCCEEEEEEecCCCEEEEEECCCCCCEEEEchHHEEEccCCCC
Confidence            3689999998  556899999999999999999999999986   58899999999999965433

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B

Probab=99.23  E-value=4.8e-12  Score=106.17  Aligned_cols=57  Identities=25%  Similarity=0.511  Sum_probs=51.6

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEE-----ecCCCcEEEEec---------CCcEEEEcCCCeEec
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVS-----KDEEHWWTAQNI---------SGEVGSIPVPYVQKY  441 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~-----~~~~~W~~~~~~---------~g~~G~~P~~~v~~~  441 (563)
                      ..+++|||+|.++.++||+|++||+|.|+.     +.++|||+|+..         +|+.||||++||+++
T Consensus        44 ~~~~~Alydy~a~~~dELsf~~GDiI~Vl~~~~~~~~~~gWw~G~~~~t~~~~~~~~g~~G~fPsnyV~~l  114 (115)
T 1bb9_A           44 MFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV  114 (115)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEE
T ss_pred             ceEEEECCccCCCCCCccCcCCCCEEEEeeccCCcccCCCeEEEEeCCCcccccccCCCEEEechHHEEEC
Confidence            567999999999999999999999999999     678899999743         389999999999876

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens}

Probab=99.22  E-value=1.1e-11  Score=99.67  Aligned_cols=75  Identities=16%  Similarity=0.153  Sum_probs=46.5

Q ss_pred             eeeeeccccCCCCCCceeeccCCEEEEeeecCCCceeeee--CCceeeccccceeecCCCCCCCCCCCCCccCCCCCCCC
Q psy10852        208 ARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIPTNETMPFHSSMKMTGTFDPHDR  285 (563)
Q Consensus       208 ~~~~~~~~~~a~~~~eLsf~~Gd~v~V~~~~~~~W~~g~~--~g~~G~~P~~~ve~~~~~~~~p~~~~~~~~~~~~~~~~  285 (563)
                      ++|+++  +.+..++||+|.+||+|.|+++ +++||.|+.  +|+.|+||.+||+.+.....                  
T Consensus         6 ~~Alyd--y~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~~~------------------   64 (90)
T 3reb_B            6 VVALYD--YVSWSPDDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVDSGGG------------------   64 (90)
T ss_dssp             EEESSC--BCCSSTTBCCBCTTCEEEEEEC-SSSEEEEEETTTCCEEEEEGGGEEEECC---------------------
T ss_pred             EEECCc--cCcCCcCcCCCCCCCEEEEEEe-CCCEEEEEECCCCCEEEEehhheEECCCCCC------------------
Confidence            444444  4677899999999999999998 578999998  89999999999999864221                  


Q ss_pred             CCccccccCHHHHHHHHhc
Q psy10852        286 NSWYFGMMTRQEAQAILLS  304 (563)
Q Consensus       286 ~~w~~g~~sr~~A~~~l~~  304 (563)
                       .+|++.++|.+|+.+|..
T Consensus        65 -~~~~~~~~r~~ae~lL~~   82 (90)
T 3reb_B           65 -TSGGGRHRRRQAERMSQI   82 (90)
T ss_dssp             -------------------
T ss_pred             -cccccCcCHHHHHHHHhH
Confidence             338999999999999854

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.22  E-value=2.5e-11  Score=94.71  Aligned_cols=56  Identities=25%  Similarity=0.468  Sum_probs=46.6

Q ss_pred             eEEEeecccCCC---CCCCCCCCCCEEEEEEec-CCCcEEEEe-cCCcEEEEcCCCeEecc
Q psy10852        387 KVIAKYDFDGND---PDDLPFKKNDILIVVSKD-EEHWWTAQN-ISGEVGSIPVPYVQKYS  442 (563)
Q Consensus       387 ~~~a~~~y~~~~---~~el~~~~g~~v~v~~~~-~~~W~~~~~-~~g~~G~~P~~~v~~~~  442 (563)
                      .+.++|+|.++.   ++||+|++||+|.|+.+. ++|||+|++ .+|+.||||++||+++.
T Consensus        17 ~~~a~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~~~g~~G~fP~nyV~~~~   77 (78)
T 1k1z_A           17 VFQEYYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPYV   77 (78)
T ss_dssp             ECSCBSSCSCCSSSSCCCCCBCTTCEEEEEECCSSCSCEEEEETTTTEEEEECSTTEEESC
T ss_pred             EEEECCCCCCCCCCCCCccCCCCCCEEEEEEcCCCCCeEEEEECCCCCEEEEehHHeEECC
Confidence            445566666642   599999999999999995 899999987 58999999999999763

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens}

Probab=99.22  E-value=1.1e-11  Score=104.84  Aligned_cols=57  Identities=18%  Similarity=0.374  Sum_probs=51.4

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEec--CCcEEEEcCCCeEecc
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI--SGEVGSIPVPYVQKYS  442 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~--~g~~G~~P~~~v~~~~  442 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+. ++||+|+..  +|+.||||++||+.+.
T Consensus        59 ~~~~~Alydy~a~~~~eLsf~~Gd~i~vl~~~-~gWw~g~~~~~~g~~G~fP~nyV~~~~  117 (119)
T 2rqr_A           59 ERHGVAIYNFQGSGAPQLSLQIGDVVRIQETC-GDWYRGYLIKHKMLQGIFPKSFIHIKE  117 (119)
T ss_dssp             CEEEEBCSCBCCCSTTBCCBCTTCEEEEEEEE-TTEEEEEESSCTTCEEEEEGGGBCCCC
T ss_pred             ceEEEEccccCCCCCCcccCcCCCEEEEEEcC-CCEEEEEECCCCCCEEEeChhHEEEec
Confidence            45799999999999999999999999999986 699999843  7999999999998663

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A

Probab=99.22  E-value=9.7e-12  Score=94.93  Aligned_cols=56  Identities=29%  Similarity=0.360  Sum_probs=44.3

Q ss_pred             eEEeecCCCC----CCCCCCeeccCCCEEEEEEe-CCCCEEEEE--eCCeeeeecCCceEEcC
Q psy10852        483 ARVKQVRVPN----AYDKTALKLEIGDIIKVTKT-NINGQWEGE--LNGKTGHFPFTHVEFIP  538 (563)
Q Consensus       483 ~~~~~~y~~~----~~~~~eL~~~~gd~i~v~~~-~~~~w~~g~--~~g~~G~~P~~~v~~~~  538 (563)
                      ++|++.|.+.    +++++||+|++||+|.|+++ .++|||.|+  .+|+.||||++||+.+.
T Consensus         7 ~~~~~~y~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~fP~~yv~~~~   69 (70)
T 1gcq_C            7 MEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPYV   69 (70)
T ss_dssp             EEECSCBSSSSCCGGGCSCBCCBCTTCEEEEEECCTTCSEEEEEETTTTEEEEEEGGGEEECC
T ss_pred             ceEEEEEEecCCCCCCCCCcCCcCCCCEEEEEeCCCCCCCeEEEeCCCCCEeEeehHHeEECC
Confidence            4455555433    33355999999999999998 578999995  57999999999999764

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1

Probab=99.21  E-value=1.9e-11  Score=91.08  Aligned_cols=46  Identities=20%  Similarity=0.434  Sum_probs=43.0

Q ss_pred             CCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCC
Q psy10852        495 DKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       495 ~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~  540 (563)
                      +++||+|++||+|.|+++.++|||.|+.+|+.||||++||+.+.+.
T Consensus         2 ~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   47 (63)
T 1tuc_A            2 GPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSG   47 (63)
T ss_dssp             CCCCCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECSCS
T ss_pred             CccccCCCCCCEEEEEEecCCCEEEEEECCcEEEEeHHHEEEcCCC
Confidence            4789999999999999999999999999999999999999998654

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.21  E-value=2.1e-11  Score=95.14  Aligned_cols=56  Identities=27%  Similarity=0.355  Sum_probs=44.0

Q ss_pred             eEEeecCCCCC-CCCCCeeccCCCEEEEEEeC-CCCEEEEE--eCCeeeeecCCceEEcC
Q psy10852        483 ARVKQVRVPNA-YDKTALKLEIGDIIKVTKTN-INGQWEGE--LNGKTGHFPFTHVEFIP  538 (563)
Q Consensus       483 ~~~~~~y~~~~-~~~~eL~~~~gd~i~v~~~~-~~~w~~g~--~~g~~G~~P~~~v~~~~  538 (563)
                      ++++++|.++. .+++||+|++||+|.|+++. ++|||.|+  .+|++||||++||+.+.
T Consensus        18 ~~a~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~~~g~~G~fP~nyV~~~~   77 (78)
T 1k1z_A           18 FQEYYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPYV   77 (78)
T ss_dssp             CSCBSSCSCCSSSSCCCCCBCTTCEEEEEECCSSCSCEEEEETTTTEEEEECSTTEEESC
T ss_pred             EEECCCCCCCCCCCCCccCCCCCCEEEEEEcCCCCCeEEEEECCCCCEEEEehHHeEECC
Confidence            34445554211 12589999999999999995 89999999  47999999999999764

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A

Probab=99.21  E-value=2.1e-11  Score=93.11  Aligned_cols=53  Identities=26%  Similarity=0.424  Sum_probs=43.2

Q ss_pred             EeecccCCCCCCCCCCCCCEEEEEEe-cCCCcEEEEe-cCCcEEEEcCCCeEecc
Q psy10852        390 AKYDFDGNDPDDLPFKKNDILIVVSK-DEEHWWTAQN-ISGEVGSIPVPYVQKYS  442 (563)
Q Consensus       390 a~~~y~~~~~~el~~~~g~~v~v~~~-~~~~W~~~~~-~~g~~G~~P~~~v~~~~  442 (563)
                      ++++|.++.++||+|++||+|.|+.+ .+++||+|++ .+|+.||||++||+++.
T Consensus        15 ~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~fP~~yv~~~~   69 (70)
T 1gcq_C           15 GIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPYV   69 (70)
T ss_dssp             SSSCCGGGCSCBCCBCTTCEEEEEECCTTCSEEEEEETTTTEEEEEEGGGEEECC
T ss_pred             ecCCCCCCCCCcCCcCCCCEEEEEeCCCCCCCeEEEeCCCCCEeEeehHHeEECC
Confidence            33444444455999999999999999 5789999973 58999999999999763

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.19  E-value=2.7e-11  Score=111.95  Aligned_cols=57  Identities=25%  Similarity=0.292  Sum_probs=50.4

Q ss_pred             ccceEEeecCCCCCCCCCCeeccCCCEEEEEE-----eCCCCEEEEEe----------CCeeeeecCCceEEcC
Q psy10852        480 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTK-----TNINGQWEGEL----------NGKTGHFPFTHVEFIP  538 (563)
Q Consensus       480 ~~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~-----~~~~~w~~g~~----------~g~~G~~P~~~v~~~~  538 (563)
                      ..+++|+|+|.  +.+.+||+|++||+|.|+.     ..++|||+|+.          +|++||||++||+.|.
T Consensus       142 ~~~~rALYdY~--a~~~dELSf~~GDiI~Vl~~~~~~~~ddgWw~G~~~~t~~~~~d~~G~~G~FPsnYVe~l~  213 (213)
T 1mv3_A          142 MFKVQAQHDYT--ATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFPENFTERVP  213 (213)
T ss_dssp             CEEEEESSCBC--CCSTTCCCBCSSCEEEECCCSCGGGSCTTEEEEEEHHHHHTGGGGGGTCEEEESTTEEEEC
T ss_pred             ceEEEECCCcC--CCCCCcCCcCCCCEEEEeecCCCCccCCCeeEEEeCCcccccccCCCCEEEecHHHeEECc
Confidence            45789999998  5568899999999999999     77899999996          4999999999999863

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.17  E-value=1.7e-11  Score=113.27  Aligned_cols=57  Identities=25%  Similarity=0.511  Sum_probs=52.1

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEE-----ecCCCcEEEEec---------CCcEEEEcCCCeEec
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVS-----KDEEHWWTAQNI---------SGEVGSIPVPYVQKY  441 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~-----~~~~~W~~~~~~---------~g~~G~~P~~~v~~~  441 (563)
                      ..+|+|||+|.++.++||+|++||+|.|+.     +.++|||+|+..         +|+.||||++||+.+
T Consensus       142 ~~~~rALYdY~a~~~dELSf~~GDiI~Vl~~~~~~~~ddgWw~G~~~~t~~~~~d~~G~~G~FPsnYVe~l  212 (213)
T 1mv3_A          142 MFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFPENFTERV  212 (213)
T ss_dssp             CEEEEESSCBCCCSTTCCCBCSSCEEEECCCSCGGGSCTTEEEEEEHHHHHTGGGGGGTCEEEESTTEEEE
T ss_pred             ceEEEECCCcCCCCCCcCCcCCCCEEEEeecCCCCccCCCeeEEEeCCcccccccCCCCEEEecHHHeEEC
Confidence            568999999999999999999999999999     678899999853         599999999999875

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A

Probab=99.16  E-value=1.8e-11  Score=96.78  Aligned_cols=57  Identities=30%  Similarity=0.493  Sum_probs=50.6

Q ss_pred             eeeeecccCCCCCCCCCcCCCCCEEEEEEe---------------cCCCeeEEeeC-CCeeeEEecCceeecc
Q psy10852        111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSK---------------DEEHWWTAQNI-SGEVGSIPVPYVQKYS  167 (563)
Q Consensus       111 ~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~---------------~~~~ww~g~~~-~g~~G~fP~~yv~~~~  167 (563)
                      .+++|+|+|.++.++||+|++||+|.|+++               .+.+||.|++. +|++|+||++||+.+.
T Consensus         6 ~~~~Alydy~~~~~~eLs~~~Gd~I~V~~~~~~~~~~~~~~e~~~~~~gW~~g~~~~~g~~G~fP~~yV~~~~   78 (83)
T 3i5r_A            6 YQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYIG   78 (83)
T ss_dssp             EEEEECSCBCCCSTTBCCBCTTCEEEEEHHHHHHHTCTTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEEE
T ss_pred             cEEEEccccCCCCCCccccCCCCEEEEeeccccccccccccccCCCCCccEEEEeCCCCCEEEEehHHEEECC
Confidence            468999999999999999999999999965               24489999875 5999999999999875

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A

Probab=99.11  E-value=1.4e-10  Score=86.11  Aligned_cols=61  Identities=21%  Similarity=0.371  Sum_probs=48.4

Q ss_pred             CeeeEEecCceeecccccccccccccccCCCCCCCCCCCCCccccccccccCccceeeeeccccCCCCCCceeeccCCEE
Q psy10852        153 GEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDII  232 (563)
Q Consensus       153 g~~G~fP~~yv~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~a~~~~eLsf~~Gd~v  232 (563)
                      |+.||||++||++....                                   +...++++.|.+.+..++||+|++||+|
T Consensus         2 g~~G~~P~~yv~~~~~~-----------------------------------~~~~~~~alydy~a~~~~eLsf~~Gd~i   46 (62)
T 1g2b_A            2 DRQGFVPAAYVKKLDSG-----------------------------------TGKELVLALYDYQEKSPREVTMKKGDIL   46 (62)
T ss_dssp             CEEEEEEGGGEEECCCC-----------------------------------SSSCEEEECSCBCCSSTTBCCBCTTCEE
T ss_pred             CCccccccceEeecCCC-----------------------------------CCceEEEEeeeECCCCCCccCCCCCCEE
Confidence            68999999999976421                                   1123344555557888999999999999


Q ss_pred             EEeeecCCCceeeeeC
Q psy10852        233 KVTKTNINGQWEGELN  248 (563)
Q Consensus       233 ~V~~~~~~~W~~g~~~  248 (563)
                      .|+++.+++||.|+++
T Consensus        47 ~v~~~~~~~Ww~g~~n   62 (62)
T 1g2b_A           47 TLLNSTNKDWWKVEVN   62 (62)
T ss_dssp             EEEECCSSSEEEEEEC
T ss_pred             EEEEecCCCEEEEEeC
Confidence            9999999999999874

>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus}

Probab=99.03  E-value=2.7e-10  Score=87.02  Aligned_cols=53  Identities=13%  Similarity=0.328  Sum_probs=48.0

Q ss_pred             eeeeecccCCCCCCCCCcCCCCCEEEEEEec--CCCeeEEee---CCCeeeEEecCce
Q psy10852        111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQN---ISGEVGSIPVPYV  163 (563)
Q Consensus       111 ~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~--~~~ww~g~~---~~g~~G~fP~~yv  163 (563)
                      +.++++|||.+++.+||+|++|+++.|+++.  +++||.+++   ..+++|++|+|||
T Consensus        18 e~~valydF~Ar~~~ELS~~kGd~vevle~~~~~peW~lvr~~~~~~~qeGlVPsnyl   75 (82)
T 1u3o_A           18 ELTVVLQDFSAAHSSELSIQVGQTVELLERPSERPGWCLVRTTERSPPQEGLVPSSTL   75 (82)
T ss_dssp             EEEECSSCBCCCSTTCCCBCTTCEEEESSCTTSSTTEEEEEESSSSSCEEEEEEGGGS
T ss_pred             eEEEEEeeecCCCCCeeeEcCCCEEEEEecCCCCCCEEEEEECCCCCCcEeeccccEE
Confidence            5689999999999999999999999999987  489999997   3447899999999

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	563
d2eyva1	109	d.93.1.1 (A:12-120) Crk proto-oncogen {Human (Homo	8e-24
d2eyva1	109	d.93.1.1 (A:12-120) Crk proto-oncogen {Human (Homo	8e-24
d1jyra_	96	d.93.1.1 (A:) Growth factor receptor-bound protein	4e-20
d1jyra_	96	d.93.1.1 (A:) Growth factor receptor-bound protein	4e-20
d2qmsa1	113	d.93.1.1 (A:420-532) Growth factor receptor-bound	8e-20
d2qmsa1	113	d.93.1.1 (A:420-532) Growth factor receptor-bound	8e-20
d1d4ta_	104	d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sap	1e-19
d1d4ta_	104	d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sap	1e-19
d1nrva_	105	d.93.1.1 (A:) Growth factor receptor-bound protein	2e-19
d1nrva_	105	d.93.1.1 (A:) Growth factor receptor-bound protein	2e-19
d2fcia1	105	d.93.1.1 (A:1-105) Phospholipase C-gamma-1 {Cow (B	8e-19
d2fcia1	105	d.93.1.1 (A:1-105) Phospholipase C-gamma-1 {Cow (B	8e-19
d1awwa_	67	b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Hom	1e-18
d1awwa_	67	b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Hom	1e-18
d1awwa_	67	b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Hom	4e-04
d1awwa_	67	b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Hom	4e-04
d2shpa3	108	d.93.1.1 (A:111-218) Tyrosine phoshatase shp-2 {Hu	1e-18
d2shpa3	108	d.93.1.1 (A:111-218) Tyrosine phoshatase shp-2 {Hu	1e-18
d1ckaa_	57	b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse	1e-18
d1ckaa_	57	b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse	1e-18
d1ckaa_	57	b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse	5e-05
d1ckaa_	57	b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse	5e-05
d2shpa2	109	d.93.1.1 (A:2-110) Tyrosine phoshatase shp-2 {Huma	2e-18
d2shpa2	109	d.93.1.1 (A:2-110) Tyrosine phoshatase shp-2 {Huma	2e-18
d1r1qa_	97	d.93.1.1 (A:) GRB2-related adaptor protein 2 (MONA	2e-18
d1r1qa_	97	d.93.1.1 (A:) GRB2-related adaptor protein 2 (MONA	2e-18
d1i3za_	103	d.93.1.1 (A:) Ews/fli1 activated transcript 2, Eat	5e-18
d1i3za_	103	d.93.1.1 (A:) Ews/fli1 activated transcript 2, Eat	5e-18
d1jwoa_	97	d.93.1.1 (A:) Csk homologous kinase Chk {Human (Ho	5e-18
d1jwoa_	97	d.93.1.1 (A:) Csk homologous kinase Chk {Human (Ho	5e-18
d1qada_	107	d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-a	6e-18
d1qada_	107	d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-a	6e-18
d1rpya_	86	d.93.1.1 (A:) Adaptor protein Aps {Rat (Rattus nor	7e-18
d1rpya_	86	d.93.1.1 (A:) Adaptor protein Aps {Rat (Rattus nor	7e-18
d1opka2	101	d.93.1.1 (A:140-240) Abl tyrosine kinase {Mouse (M	8e-18
d1opka2	101	d.93.1.1 (A:140-240) Abl tyrosine kinase {Mouse (M	8e-18
d2c9wa2	103	d.93.1.1 (A:32-134) Suppressor of cytokine signali	1e-17
d2c9wa2	103	d.93.1.1 (A:32-134) Suppressor of cytokine signali	2e-17
d1mila_	104	d.93.1.1 (A:) Shc adaptor protein {Human (Homo sap	2e-17
d1mila_	104	d.93.1.1 (A:) Shc adaptor protein {Human (Homo sap	2e-17
d1rjaa_	100	d.93.1.1 (A:) Tyrosine-protein kinase 6 (Breast tu	2e-17
d1rjaa_	100	d.93.1.1 (A:) Tyrosine-protein kinase 6 (Breast tu	2e-17
d2oq1a1	130	d.93.1.1 (A:5-134) Tyrosine-protein kinase zap-70	3e-17
d2oq1a1	130	d.93.1.1 (A:5-134) Tyrosine-protein kinase zap-70	3e-17
d2oq1a2	124	d.93.1.1 (A:135-258) Tyrosine-protein kinase zap-7	5e-17
d2oq1a2	124	d.93.1.1 (A:135-258) Tyrosine-protein kinase zap-7	5e-17
d1o48a_	106	d.93.1.1 (A:) c-src tyrosine kinase {Human (Homo s	7e-17
d1o48a_	106	d.93.1.1 (A:) c-src tyrosine kinase {Human (Homo s	7e-17
d1lkka_	105	d.93.1.1 (A:) p56-lck tyrosine kinase {Human (Homo	9e-17
d1lkka_	105	d.93.1.1 (A:) p56-lck tyrosine kinase {Human (Homo	9e-17
d1k9aa2	101	d.93.1.1 (A:77-177) Carboxyl-terminal src kinase (	1e-16
d1k9aa2	101	d.93.1.1 (A:77-177) Carboxyl-terminal src kinase (	1e-16
d1uura3	131	d.93.1.1 (A:577-707) STAT homologue {Dictyostelium	1e-16
d1uura3	131	d.93.1.1 (A:577-707) STAT homologue {Dictyostelium	1e-16
d1gl5a_	67	b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musc	1e-16
d1gl5a_	67	b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musc	1e-16
d1gl5a_	67	b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musc	5e-05
d1gl5a_	67	b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musc	5e-05
d1xa6a2	141	d.93.1.1 (A:21-161) Beta-chimaerin, N-terminal dom	2e-16
d1xa6a2	141	d.93.1.1 (A:21-161) Beta-chimaerin, N-terminal dom	2e-16
d1qcfa2	103	d.93.1.1 (A:146-248) Hemopoetic cell kinase Hck {H	5e-16
d1qcfa2	103	d.93.1.1 (A:146-248) Hemopoetic cell kinase Hck {H	5e-16
d1luia_	108	d.93.1.1 (A:) Itk/tsk protein tyrosine kinase {Mou	6e-16
d1luia_	108	d.93.1.1 (A:) Itk/tsk protein tyrosine kinase {Mou	6e-16
d2hspa_	71	b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (	7e-16
d2hspa_	71	b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (	7e-16
d2hspa_	71	b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (	2e-06
d2hspa_	71	b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (	3e-06
d1u5sa1	71	b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [Tax	8e-16
d1u5sa1	71	b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [Tax	8e-16
d1u5sa1	71	b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [Tax	2e-04
d1u5sa1	71	b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [Tax	6e-04
d1blja_	114	d.93.1.1 (A:) P55 Blk protein tyrosine kinase {Mou	9e-16
d1blja_	114	d.93.1.1 (A:) P55 Blk protein tyrosine kinase {Mou	9e-16
d1a81a2	125	d.93.1.1 (A:138-262) Syk tyrosine kinase {Human (H	1e-15
d1a81a2	125	d.93.1.1 (A:138-262) Syk tyrosine kinase {Human (H	1e-15
d1g83a2	104	d.93.1.1 (A:142-245) Tyrosine kinase Fyn {Human (H	1e-15
d1g83a2	104	d.93.1.1 (A:142-245) Tyrosine kinase Fyn {Human (H	1e-15
d1fu6a_	111	d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-a	2e-15
d1fu6a_	111	d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-a	2e-15
d1udla_	98	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	2e-15
d1udla_	98	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	2e-15
d1udla_	98	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	1e-09
d1udla_	98	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	1e-09
d1u06a1	55	b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chic	2e-15
d1u06a1	55	b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chic	2e-15
d1u06a1	55	b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chic	2e-07
d1u06a1	55	b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chic	2e-07
d1efna_	57	b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase,	5e-15
d1efna_	57	b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase,	5e-15
d1efna_	57	b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase,	4e-04
d1efna_	57	b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase,	4e-04
d2izva2	112	d.93.1.1 (A:274-385) Suppressor of cytokine signal	5e-15
d2izva2	112	d.93.1.1 (A:274-385) Suppressor of cytokine signal	5e-15
d1a81a1	129	d.93.1.1 (A:9-137) Syk tyrosine kinase {Human (Hom	6e-15
d1a81a1	129	d.93.1.1 (A:9-137) Syk tyrosine kinase {Human (Hom	6e-15
d1sema_	58	b.34.2.1 (A:) Growth factor receptor-bound protein	9e-15
d1sema_	58	b.34.2.1 (A:) Growth factor receptor-bound protein	9e-15
d1sema_	58	b.34.2.1 (A:) Growth factor receptor-bound protein	1e-07
d1sema_	58	b.34.2.1 (A:) Growth factor receptor-bound protein	1e-07
d1k9aa1	71	b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (cs	9e-15
d1k9aa1	71	b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (cs	9e-15
d1k9aa1	71	b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (cs	8e-04
d1k9aa1	71	b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (cs	0.002
d1k4us_	62	b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId	1e-14
d1k4us_	62	b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId	1e-14
d1k4us_	62	b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId	3e-09
d1k4us_	62	b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId	3e-09
d1uhfa_	69	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	1e-14
d1uhfa_	69	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	1e-14
d1uhfa_	69	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	9e-08
d1uhfa_	69	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	6e-07
d2rn8a1	53	b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus	2e-14
d2rn8a1	53	b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus	2e-14
d1gcqa_	56	b.34.2.1 (A:) Growth factor receptor-bound protein	2e-14
d1gcqa_	56	b.34.2.1 (A:) Growth factor receptor-bound protein	2e-14
d1gcqa_	56	b.34.2.1 (A:) Growth factor receptor-bound protein	9e-08
d1gcqa_	56	b.34.2.1 (A:) Growth factor receptor-bound protein	9e-08
d1ng2a2	118	b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic	2e-14
d1ng2a2	118	b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic	2e-14
d1ng2a2	118	b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic	7e-06
d1ng2a2	118	b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic	9e-06
d1uj0a_	58	b.34.2.1 (A:) Signal transducing adaptor molecule	2e-14
d1uj0a_	58	b.34.2.1 (A:) Signal transducing adaptor molecule	2e-14
d1uj0a_	58	b.34.2.1 (A:) Signal transducing adaptor molecule	4e-07
d1uj0a_	58	b.34.2.1 (A:) Signal transducing adaptor molecule	4e-07
d2iima1	62	b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 d	2e-14
d2iima1	62	b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 d	2e-14
d2iima1	62	b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 d	9e-04
d2iima1	62	b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 d	9e-04
d1fmka1	64	b.34.2.1 (A:82-145) c-src protein tyrosine kinase	3e-14
d1fmka1	64	b.34.2.1 (A:82-145) c-src protein tyrosine kinase	3e-14
d1fmka1	64	b.34.2.1 (A:82-145) c-src protein tyrosine kinase	2e-04
d1fmka1	64	b.34.2.1 (A:82-145) c-src protein tyrosine kinase	2e-04
d1qcfa1	65	b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Hu	3e-14
d1qcfa1	65	b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Hu	3e-14
d1qcfa1	65	b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Hu	2e-05
d1qcfa1	65	b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Hu	2e-05
d1ugva_	72	b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA062	3e-14
d1ugva_	72	b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA062	3e-14
d1ugva_	72	b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA062	3e-06
d1ugva_	72	b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA062	3e-06
d1jo8a_	58	b.34.2.1 (A:) Actin binding protein ABP1 {Baker's	4e-14
d1jo8a_	58	b.34.2.1 (A:) Actin binding protein ABP1 {Baker's	4e-14
d1jo8a_	58	b.34.2.1 (A:) Actin binding protein ABP1 {Baker's	4e-05
d1jo8a_	58	b.34.2.1 (A:) Actin binding protein ABP1 {Baker's	4e-05
d1utia_	57	b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona	5e-14
d1utia_	57	b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona	5e-14
d1utia_	57	b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona	1e-08
d1utia_	57	b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona	1e-08
d1arka_	60	b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo	6e-14
d1arka_	60	b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo	6e-14
d1arka_	60	b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo	1e-04
d1arka_	60	b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo	1e-04
d1ujya_	76	b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens	7e-14
d1ujya_	76	b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens	7e-14
d1ujya_	76	b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens	2e-11
d1ujya_	76	b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens	2e-10
d1oota_	58	b.34.2.1 (A:) Hypothetical protein YFR024c {Baker'	1e-13
d1oota_	58	b.34.2.1 (A:) Hypothetical protein YFR024c {Baker'	1e-13
d1oota_	58	b.34.2.1 (A:) Hypothetical protein YFR024c {Baker'	2e-06
d1oota_	58	b.34.2.1 (A:) Hypothetical protein YFR024c {Baker'	2e-06
d1gria1	56	b.34.2.1 (A:1-56) Growth factor receptor-bound pro	1e-13
d1gria1	56	b.34.2.1 (A:1-56) Growth factor receptor-bound pro	1e-13
d1gria1	56	b.34.2.1 (A:1-56) Growth factor receptor-bound pro	1e-05
d1gria1	56	b.34.2.1 (A:1-56) Growth factor receptor-bound pro	1e-05
d1vyva1	145	b.34.2.1 (A:71-215) SH3-like domain of the L-type	1e-13
d1vyva1	145	b.34.2.1 (A:71-215) SH3-like domain of the L-type	1e-13
d2cs0a1	106	d.93.1.1 (A:8-113) Hematopoietic SH2 domain contai	4e-13
d2cs0a1	106	d.93.1.1 (A:8-113) Hematopoietic SH2 domain contai	4e-13
d1bg1a3	141	d.93.1.1 (A:576-716) STAT3b {Mouse (Mus musculus)	6e-13
d1bg1a3	141	d.93.1.1 (A:576-716) STAT3b {Mouse (Mus musculus)	6e-13
d1ycsb2	63	b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [	1e-12
d1ycsb2	63	b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [	1e-12
d1ycsb2	63	b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [	1e-05
d1ycsb2	63	b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [	1e-05
d1uhca_	79	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	1e-12
d1uhca_	79	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	1e-12
d1uhca_	79	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	1e-04
d1uhca_	79	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	6e-04
d1j3ta_	74	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	1e-12
d1j3ta_	74	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	1e-12
d1j3ta_	74	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	2e-09
d1j3ta_	74	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	6e-09
d1t0ha_	96	b.34.2.1 (A:) SH3-like domain of the L-type calciu	3e-12
d1t0ha_	96	b.34.2.1 (A:) SH3-like domain of the L-type calciu	3e-12
d1opka1	57	b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domai	3e-12
d1opka1	57	b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domai	3e-12
d1opka1	57	b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domai	1e-04
d1opka1	57	b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domai	1e-04
d2v1ra1	67	b.34.2.1 (A:10-76) Peroxisomal membrane protein Pe	7e-12
d2v1ra1	67	b.34.2.1 (A:10-76) Peroxisomal membrane protein Pe	7e-12
d2v1ra1	67	b.34.2.1 (A:10-76) Peroxisomal membrane protein Pe	9e-04
d2v1ra1	67	b.34.2.1 (A:10-76) Peroxisomal membrane protein Pe	9e-04
d1vyua1	136	b.34.2.1 (A:39-174) SH3-like domain of the L-type	1e-11
d1vyua1	136	b.34.2.1 (A:39-174) SH3-like domain of the L-type	1e-11
d1i07a_	59	b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus	2e-11
d1i07a_	59	b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus	2e-11
d1i07a_	59	b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus	5e-04
d1i07a_	59	b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus	5e-04
d1ue9a_	80	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	2e-11
d1ue9a_	80	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	2e-11
d1ue9a_	80	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	6e-06
d1ue9a_	80	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	2e-05
d1spka_	72	b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RI	3e-11
d1spka_	72	b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RI	3e-11
d1spka_	72	b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RI	3e-04
d1spka_	72	b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RI	3e-04
d1ng2a1	58	b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic	3e-11
d1ng2a1	58	b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic	3e-11
d1ng2a1	58	b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic	1e-04
d1ng2a1	58	b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic	1e-04
d1wlpb1	53	b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic	3e-11
d1wlpb1	53	b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic	3e-11
d1wlpb1	53	b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic	2e-04
d1wlpb1	53	b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic	2e-04
d1uffa_	93	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	8e-11
d1uffa_	93	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	8e-11
d1uffa_	93	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	3e-07
d1uffa_	93	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	1e-06
d1bb9a_	83	b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicu	8e-11
d1bb9a_	83	b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicu	8e-11
d1wfwa_	74	b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [Ta	3e-10
d1wfwa_	74	b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [Ta	3e-10
d1kjwa1	96	b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicu	3e-10
d1kjwa1	96	b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicu	3e-10
d1wiea_	96	b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human	2e-09
d1wiea_	96	b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human	2e-09
d1wiea_	96	b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human	4e-05
d1wiea_	96	b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human	1e-04
d1gcqc_	69	b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mu	2e-09
d1gcqc_	69	b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mu	2e-09
d1gcqc_	69	b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mu	1e-05
d1gcqc_	69	b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mu	1e-05
d1zuua1	56	b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyc	3e-09
d1zuua1	56	b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyc	3e-09
d1i1ja_	106	b.34.2.1 (A:) Melanoma inhibitory activity protein	2e-08
d1i1ja_	106	b.34.2.1 (A:) Melanoma inhibitory activity protein	2e-08
d1phta_	83	b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-a	2e-08
d1phta_	83	b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-a	2e-08
d1phta_	83	b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-a	0.002
d1phta_	83	b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-a	0.002
d1ug1a_	92	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	3e-07
d1ug1a_	92	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	3e-07

>d2eyva1 d.93.1.1 (A:12-120) Crk proto-oncogen {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Crk proto-oncogen
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.1 bits (233), Expect = 8e-24
 Identities = 52/110 (47%), Positives = 70/110 (63%), Gaps = 14/110 (12%)

Query: 12  SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK------ 65
           SWY+G ++RQEA A LL  + +G FLVRDS+T  G+YVL V EN++VSHYIIN       
Sbjct: 1   SWYWGRLSRQEAVA-LLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPP 59

Query: 66  -------ITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK 108
                         +  +IGD+ F  LP+LL FYK+HYLDT+ LI+P ++
Sbjct: 60  VPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSR 109

>d2eyva1 d.93.1.1 (A:12-120) Crk proto-oncogen {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Crk proto-oncogen
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.1 bits (233), Expect = 8e-24
 Identities = 52/110 (47%), Positives = 70/110 (63%), Gaps = 14/110 (12%)

Query: 287 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK------ 340
           SWY+G ++RQEA A LL  + +G FLVRDS+T  G+YVL V EN++VSHYIIN       
Sbjct: 1   SWYWGRLSRQEAVA-LLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPP 59

Query: 341 -------ITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK 383
                         +  +IGD+ F  LP+LL FYK+HYLDT+ LI+P ++
Sbjct: 60  VPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSR 109

>d1jyra_ d.93.1.1 (A:) Growth factor receptor-bound protein 2 (GRB2) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 2 (GRB2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.0 bits (205), Expect = 4e-20
 Identities = 23/85 (27%), Positives = 47/85 (55%), Gaps = 4/85 (4%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
          W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+ + +    +  
Sbjct: 5  WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLR----DGA 60

Query: 73 TCYKIGDKTFSDLPSLLAFYKVHYL 97
            Y +    F+ L  L+ +++   +
Sbjct: 61 GKYFLWVVKFNSLNELVDYHRSTSV 85

>d1jyra_ d.93.1.1 (A:) Growth factor receptor-bound protein 2 (GRB2) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 2 (GRB2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.0 bits (205), Expect = 4e-20
 Identities = 23/85 (27%), Positives = 47/85 (55%), Gaps = 4/85 (4%)

Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 347
           W+FG + R +A+ +L  ++ +GAFL+R+S +  G++ L VK  N V H+ + +    +  
Sbjct: 5   WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLR----DGA 60

Query: 348 TCYKIGDKTFSDLPSLLAFYKVHYL 372
             Y +    F+ L  L+ +++   +
Sbjct: 61  GKYFLWVVKFNSLNELVDYHRSTSV 85

>d2qmsa1 d.93.1.1 (A:420-532) Growth factor receptor-bound protein 7 {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.7 bits (204), Expect = 8e-20
 Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 7/107 (6%)

Query: 8   HDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI 66
           H    W+ G ++R+E+Q ++  +   +G FLVR+S      +VL +    KV HY+I   
Sbjct: 7   HRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILP- 65

Query: 67  TNTEQQTCYKI--GDKTFSDLPSLLAFYKVH--YLDTSPLIKPATKT 109
           +  E +  + +  G   F+DL  L+ F++++   L    L    T+ 
Sbjct: 66  SEEEGRLYFSMDDGQTRFTDLLQLVEFHQLNRGILPC-LLRHCCTRV 111

>d2qmsa1 d.93.1.1 (A:420-532) Growth factor receptor-bound protein 7 {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.7 bits (204), Expect = 8e-20
 Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 7/107 (6%)

Query: 283 HDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI 341
           H    W+ G ++R+E+Q ++  +   +G FLVR+S      +VL +    KV HY+I   
Sbjct: 7   HRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILP- 65

Query: 342 TNTEQQTCYKI--GDKTFSDLPSLLAFYKVH--YLDTSPLIKPATKT 384
           +  E +  + +  G   F+DL  L+ F++++   L    L    T+ 
Sbjct: 66  SEEEGRLYFSMDDGQTRFTDLLQLVEFHQLNRGILPC-LLRHCCTRV 111

>d1d4ta_ d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: The Xlp protein Sap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.0 bits (202), Expect = 1e-19
 Identities = 24/103 (23%), Positives = 51/103 (49%), Gaps = 3/103 (2%)

Query: 9   DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 68
           D  + Y G ++R+  + +LL+   +G++L+RDS ++ G Y LCV  +  +  Y +++   
Sbjct: 2   DAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTET 61

Query: 69  TEQ--QTCYKIGDKTFSDLPSLLAFYKVHYLD-TSPLIKPATK 108
                +T   +  + F  + +L++ ++        PL  P  K
Sbjct: 62  GSWSAETAPGVHKRYFRKIKNLISAFQKPDQGIVIPLQYPVEK 104

>d1d4ta_ d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: The Xlp protein Sap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.0 bits (202), Expect = 1e-19
 Identities = 24/103 (23%), Positives = 51/103 (49%), Gaps = 3/103 (2%)

Query: 284 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 343
           D  + Y G ++R+  + +LL+   +G++L+RDS ++ G Y LCV  +  +  Y +++   
Sbjct: 2   DAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTET 61

Query: 344 TEQ--QTCYKIGDKTFSDLPSLLAFYKVHYLD-TSPLIKPATK 383
                +T   +  + F  + +L++ ++        PL  P  K
Sbjct: 62  GSWSAETAPGVHKRYFRKIKNLISAFQKPDQGIVIPLQYPVEK 104

>d1nrva_ d.93.1.1 (A:) Growth factor receptor-bound protein 10, GRB10 {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 10, GRB10
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.5 bits (201), Expect = 2e-19
 Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 7/106 (6%)

Query: 8   HDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI 66
           H    W+ G ++R+E+  I+  +   +G FL+RDS +    +VL +  + K+ ++ I   
Sbjct: 2   HRTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILP- 60

Query: 67  TNTEQQTCYKI--GDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 108
              + QT + +  G+  FSDL  L+ FY+++   L    L     +
Sbjct: 61  CEDDGQTFFSLDDGNTKFSDLIQLVDFYQLNKGVLPC-KLKHHCIR 105

>d1nrva_ d.93.1.1 (A:) Growth factor receptor-bound protein 10, GRB10 {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 10, GRB10
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.5 bits (201), Expect = 2e-19
 Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 7/106 (6%)

Query: 283 HDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI 341
           H    W+ G ++R+E+  I+  +   +G FL+RDS +    +VL +  + K+ ++ I   
Sbjct: 2   HRTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILP- 60

Query: 342 TNTEQQTCYKI--GDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 383
              + QT + +  G+  FSDL  L+ FY+++   L    L     +
Sbjct: 61  CEDDGQTFFSLDDGNTKFSDLIQLVDFYQLNKGVLPC-KLKHHCIR 105

>d2fcia1 d.93.1.1 (A:1-105) Phospholipase C-gamma-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 105

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phospholipase C-gamma-1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 79.7 bits (196), Expect = 8e-19
 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 7/107 (6%)

Query: 3   GTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYI 62
           G+   H+   WY   +TR +A+ +L+    +GAFLVR  N     Y +  +   K+ H  
Sbjct: 1   GSPGIHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEPNS-YAISFRAEGKIKHCR 59

Query: 63  INKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYL-DTSPLIKPATK 108
           + +     +     +G+  F  L  L+++Y+ H L     L  P  +
Sbjct: 60  VQQ-----EGQTVMLGNSEFDSLVDLISYYEKHPLYRKMKLRYPINE 101

>d2fcia1 d.93.1.1 (A:1-105) Phospholipase C-gamma-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 105

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phospholipase C-gamma-1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 79.7 bits (196), Expect = 8e-19
 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 7/107 (6%)

Query: 278 GTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYI 337
           G+   H+   WY   +TR +A+ +L+    +GAFLVR  N     Y +  +   K+ H  
Sbjct: 1   GSPGIHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEPNS-YAISFRAEGKIKHCR 59

Query: 338 INKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYL-DTSPLIKPATK 383
           + +     +     +G+  F  L  L+++Y+ H L     L  P  +
Sbjct: 60  VQQ-----EGQTVMLGNSEFDSLVDLISYYEKHPLYRKMKLRYPINE 101

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.9 bits (192), Expect = 1e-18
 Identities = 19/63 (30%), Positives = 36/63 (57%)

Query: 106 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           +T  ++KV+A YD+   + +DL  +K D   ++ +    WW A++ +G+ G IP  YV +
Sbjct: 4   STSELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTE 63

Query: 166 YSE 168
             +
Sbjct: 64  AED 66

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.9 bits (192), Expect = 1e-18
 Identities = 19/63 (30%), Positives = 36/63 (57%)

Query: 381 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 440
           +T  ++KV+A YD+   + +DL  +K D   ++ +    WW A++ +G+ G IP  YV +
Sbjct: 4   STSELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTE 63

Query: 441 YSE 443
             +
Sbjct: 64  AED 66

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (85), Expect = 4e-04
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 208 ARVKQVRVPNAYDKTA---LKLEIGDIIKVT-KTNINGQWEGELNGKTGHFPFTHVEFIP 263
           + +K+V     Y       L+L  GD   +  ++N+      + NG+ G+ P  +V    
Sbjct: 6   SELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAE 65

Query: 264 TN 265
            +
Sbjct: 66  DS 67

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (85), Expect = 4e-04
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 483 ARVKQVRVPNAYDKTA---LKLEIGDIIKVT-KTNINGQWEGELNGKTGHFPFTHVEFIP 538
           + +K+V     Y       L+L  GD   +  ++N+      + NG+ G+ P  +V    
Sbjct: 6   SELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAE 65

Query: 539 TN 540
            +
Sbjct: 66  DS 67

>d2shpa3 d.93.1.1 (A:111-218) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine phoshatase shp-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.4 bits (195), Expect = 1e-18
 Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 6/94 (6%)

Query: 13  WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK------I 66
           W+ G ++ +EA+ +L  +  +G+FLVR+S +  G++VL V+  +        K      +
Sbjct: 2   WFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVM 61

Query: 67  TNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTS 100
              ++      G + F  L  L+  YK + +  +
Sbjct: 62  IRCQELKYDVGGGERFDSLTDLVEHYKKNPMVET 95

>d2shpa3 d.93.1.1 (A:111-218) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine phoshatase shp-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.4 bits (195), Expect = 1e-18
 Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 6/94 (6%)

Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK------I 341
           W+ G ++ +EA+ +L  +  +G+FLVR+S +  G++VL V+  +        K      +
Sbjct: 2   WFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVM 61

Query: 342 TNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTS 375
              ++      G + F  L  L+  YK + +  +
Sbjct: 62  IRCQELKYDVGGGERFDSLTDLVEHYKKNPMVET 95

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.4 bits (191), Expect = 1e-18
 Identities = 33/56 (58%), Positives = 41/56 (73%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 166
           E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ G IPVPYV+KY
Sbjct: 2   EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 57

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.4 bits (191), Expect = 1e-18
 Identities = 33/56 (58%), Positives = 41/56 (73%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 441
           E V A +DF+GND +DLPFKK DIL +  K EE WW A++  G+ G IPVPYV+KY
Sbjct: 2   EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 57

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.9 bits (91), Expect = 5e-05
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGE-LNGKTGHFPFTHVE 260
           N  D+  L  + GDI+++        W  E   GK G  P  +VE
Sbjct: 11  NGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 55

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.9 bits (91), Expect = 5e-05
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 492 NAYDKTALKLEIGDIIKVTKTNINGQWEGE-LNGKTGHFPFTHVE 535
           N  D+  L  + GDI+++        W  E   GK G  P  +VE
Sbjct: 11  NGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 55

>d2shpa2 d.93.1.1 (A:2-110) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine phoshatase shp-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.5 bits (193), Expect = 2e-18
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 4/85 (4%)

Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
          W+   +T  EA+ +LL+   +G+FL R S +  G+  L V+ N  V+H  I         
Sbjct: 5  WFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQN----TGD 60

Query: 73 TCYKIGDKTFSDLPSLLAFYKVHYL 97
               G + F+ L  L+ +Y  H+ 
Sbjct: 61 YYDLYGGEKFATLAELVQYYMEHHG 85

>d2shpa2 d.93.1.1 (A:2-110) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine phoshatase shp-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.5 bits (193), Expect = 2e-18
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 4/85 (4%)

Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 347
           W+   +T  EA+ +LL+   +G+FL R S +  G+  L V+ N  V+H  I         
Sbjct: 5   WFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQN----TGD 60

Query: 348 TCYKIGDKTFSDLPSLLAFYKVHYL 372
                G + F+ L  L+ +Y  H+ 
Sbjct: 61  YYDLYGGEKFATLAELVQYYMEHHG 85

>d1r1qa_ d.93.1.1 (A:) GRB2-related adaptor protein 2 (MONA, GRID) {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: GRB2-related adaptor protein 2 (MONA, GRID)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.0 bits (192), Expect = 2e-18
 Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 5/86 (5%)

Query: 12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 71
           W+   ++R +A+  LL  KD G F++R S +  G++ + V+  + V H+ + + T    
Sbjct: 7  EWFHEGLSRHQAEN-LLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTK--- 62

Query: 72 QTCYKIGDKTFSDLPSLLAFYKVHYL 97
             Y +  + F  L  L+ +Y+   +
Sbjct: 63 -GNYFLWTEKFPSLNKLVDYYRTTSI 87

>d1r1qa_ d.93.1.1 (A:) GRB2-related adaptor protein 2 (MONA, GRID) {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: GRB2-related adaptor protein 2 (MONA, GRID)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.0 bits (192), Expect = 2e-18
 Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 5/86 (5%)

Query: 287 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 346
            W+   ++R +A+  LL  KD G F++R S +  G++ + V+  + V H+ + + T    
Sbjct: 7   EWFHEGLSRHQAEN-LLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTK--- 62

Query: 347 QTCYKIGDKTFSDLPSLLAFYKVHYL 372
              Y +  + F  L  L+ +Y+   +
Sbjct: 63  -GNYFLWTEKFPSLNKLVDYYRTTSI 87

>d1i3za_ d.93.1.1 (A:) Ews/fli1 activated transcript 2, Eat2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Ews/fli1 activated transcript 2, Eat2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.4 bits (190), Expect = 5e-18
 Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 5/100 (5%)

Query: 13  WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ- 71
           +Y G +T++E +A+LL    +G FL+RDS ++ G   LCV     V  Y I +  +    
Sbjct: 5   YYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHGYYR 64

Query: 72  -QTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 108
            +T        F +L  L++ Y      L    L  P  +
Sbjct: 65  IETDAHTPRTIFPNLQELVSKYGKPGQGLVV-HLSNPIMR 103

>d1i3za_ d.93.1.1 (A:) Ews/fli1 activated transcript 2, Eat2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Ews/fli1 activated transcript 2, Eat2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.4 bits (190), Expect = 5e-18
 Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 5/100 (5%)

Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ- 346
           +Y G +T++E +A+LL    +G FL+RDS ++ G   LCV     V  Y I +  +    
Sbjct: 5   YYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHGYYR 64

Query: 347 -QTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 383
            +T        F +L  L++ Y      L    L  P  +
Sbjct: 65  IETDAHTPRTIFPNLQELVSKYGKPGQGLVV-HLSNPIMR 103

>d1jwoa_ d.93.1.1 (A:) Csk homologous kinase Chk {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Csk homologous kinase Chk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.3 bits (190), Expect = 5e-18
 Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 6/97 (6%)

Query: 13  WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
           W+ G ++ QEA    L   ++G FLVR+S    G+YVLCV     V HY +         
Sbjct: 6   WFHGKISGQEAVQ-QLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDG---- 60

Query: 73  TCYKIGDKTFSDLPSLLAFYKVHYL-DTSPLIKPATK 108
                    F +L  ++  Y        + L++P  K
Sbjct: 61  HLTIDEAVFFCNLMDMVEHYSKDKGAICTKLVRPKRK 97

>d1jwoa_ d.93.1.1 (A:) Csk homologous kinase Chk {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Csk homologous kinase Chk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.3 bits (190), Expect = 5e-18
 Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 6/97 (6%)

Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 347
           W+ G ++ QEA    L   ++G FLVR+S    G+YVLCV     V HY +         
Sbjct: 6   WFHGKISGQEAVQ-QLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDG---- 60

Query: 348 TCYKIGDKTFSDLPSLLAFYKVHYL-DTSPLIKPATK 383
                    F +L  ++  Y        + L++P  K
Sbjct: 61  HLTIDEAVFFCNLMDMVEHYSKDKGAICTKLVRPKRK 97

>d1qada_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Cow (Bos taurus) [TaxId: 9913]} Length = 107

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phosphatidylinositol 3-kinase, p85-alpha subunit
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.4 bits (190), Expect = 6e-18
 Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 5/93 (5%)

Query: 8   HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKIT 67
           HD  +W  G   R +A+  LL  K +G FLVR+S+   G Y   V  + +V H     I 
Sbjct: 6   HDEKTWNVGSSNRNKAEN-LLRGKRDGTFLVRESSKQ-GCYACSVVVDGEVKHC---VIN 60

Query: 68  NTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTS 100
            T     +      +S L  L+  Y+   L   
Sbjct: 61  KTATGYGFAEPYNLYSSLKELVLHYQHTSLVQH 93

>d1qada_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Cow (Bos taurus) [TaxId: 9913]} Length = 107

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phosphatidylinositol 3-kinase, p85-alpha subunit
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.4 bits (190), Expect = 6e-18
 Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 5/93 (5%)

Query: 283 HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKIT 342
           HD  +W  G   R +A+  LL  K +G FLVR+S+   G Y   V  + +V H     I 
Sbjct: 6   HDEKTWNVGSSNRNKAEN-LLRGKRDGTFLVRESSKQ-GCYACSVVVDGEVKHC---VIN 60

Query: 343 NTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTS 375
            T     +      +S L  L+  Y+   L   
Sbjct: 61  KTATGYGFAEPYNLYSSLKELVLHYQHTSLVQH 93

>d1rpya_ d.93.1.1 (A:) Adaptor protein Aps {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 86

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Adaptor protein Aps
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 76.5 bits (188), Expect = 7e-18
 Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 6/83 (7%)

Query: 13 WYFGMMTRQEAQAILLSE--KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTE 70
          W+ G ++R +A  ++L+   + +G F++R S T  G  VL      K  H  ++      
Sbjct: 7  WFHGTLSRVKAAQLVLAGGPRSHGLFVIRQSETRPGECVLTFNFQGKAKHLRLSL----N 62

Query: 71 QQTCYKIGDKTFSDLPSLLAFYK 93
                +    F  +  +L  + 
Sbjct: 63 GHGQCHVQHLWFQSVFDMLRHFH 85

>d1rpya_ d.93.1.1 (A:) Adaptor protein Aps {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 86

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Adaptor protein Aps
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 76.5 bits (188), Expect = 7e-18
 Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 6/83 (7%)

Query: 288 WYFGMMTRQEAQAILLSE--KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTE 345
           W+ G ++R +A  ++L+   + +G F++R S T  G  VL      K  H  ++      
Sbjct: 7   WFHGTLSRVKAAQLVLAGGPRSHGLFVIRQSETRPGECVLTFNFQGKAKHLRLSL----N 62

Query: 346 QQTCYKIGDKTFSDLPSLLAFYK 368
                 +    F  +  +L  + 
Sbjct: 63  GHGQCHVQHLWFQSVFDMLRHFH 85

>d1opka2 d.93.1.1 (A:140-240) Abl tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 101

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Abl tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.6 bits (188), Expect = 8e-18
 Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 7/102 (6%)

Query: 9   DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 68
           +++SWY G ++R  A+  LLS   NG+FLVR+S +  G   + ++   +V HY   +I  
Sbjct: 3   EKHSWYHGPVSRNAAEY-LLSSGINGSFLVRESESSPGQRSISLRYEGRVYHY---RINT 58

Query: 69  TEQQTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 108
                 Y   +  F+ L  L+  +      L T  L  PA K
Sbjct: 59  ASDGKLYVSSESRFNTLAELVHHHSTVADGLIT-TLHYPAPK 99

>d1opka2 d.93.1.1 (A:140-240) Abl tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 101

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Abl tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.6 bits (188), Expect = 8e-18
 Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 7/102 (6%)

Query: 284 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 343
           +++SWY G ++R  A+  LLS   NG+FLVR+S +  G   + ++   +V HY   +I  
Sbjct: 3   EKHSWYHGPVSRNAAEY-LLSSGINGSFLVRESESSPGQRSISLRYEGRVYHY---RINT 58

Query: 344 TEQQTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 383
                 Y   +  F+ L  L+  +      L T  L  PA K
Sbjct: 59  ASDGKLYVSSESRFNTLAELVHHHSTVADGLIT-TLHYPAPK 99

>d2c9wa2 d.93.1.1 (A:32-134) Suppressor of cytokine signaling 2, SOCS-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Suppressor of cytokine signaling 2, SOCS-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.6 bits (188), Expect = 1e-17
 Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 4/96 (4%)

Query: 275 KMTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVS 334
           ++        +  WY+G MT  EA+  L    +   FL+RDS+       + VK +   +
Sbjct: 4   RLAKALRELGQTGWYWGSMTVNEAKEKLKEAPEG-TFLIRDSSHSDYLLTISVKTSAGPT 62

Query: 335 HYIINKITNT---EQQTCYKIGDKTFSDLPSLLAFY 367
           +  I         +   C K   K F  +  L+ +Y
Sbjct: 63  NLRIEYQDGKFRLDSIICVKSKLKQFDSVVHLIDYY 98

>d2c9wa2 d.93.1.1 (A:32-134) Suppressor of cytokine signaling 2, SOCS-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Suppressor of cytokine signaling 2, SOCS-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.8 bits (186), Expect = 2e-17
 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 4/95 (4%)

Query: 1  MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
          +        +  WY+G MT  EA+  L    +   FL+RDS+       + VK +   ++
Sbjct: 5  LAKALRELGQTGWYWGSMTVNEAKEKLKEAPEG-TFLIRDSSHSDYLLTISVKTSAGPTN 63

Query: 61 YIINKITNT---EQQTCYKIGDKTFSDLPSLLAFY 92
            I         +   C K   K F  +  L+ +Y
Sbjct: 64 LRIEYQDGKFRLDSIICVKSKLKQFDSVVHLIDYY 98

>d1mila_ d.93.1.1 (A:) Shc adaptor protein {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Shc adaptor protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.8 bits (186), Expect = 2e-17
 Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 14/104 (13%)

Query: 13  WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
           W+ G ++R+EA+A+L   + NG FLVR+S T  G YVL   ++ +  H ++      + +
Sbjct: 9   WFHGKLSRREAEALL---QLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLV-----DPE 60

Query: 73  TCYKIGDKTFSDLPSLLAFYKVHYLDTSP------LIKPATKTI 110
              +  D  F  +  L++++  ++L          L +P  + +
Sbjct: 61  GVVRTKDHRFESVSHLISYHMDNHLPIISAGSELCLQQPVERKL 104

>d1mila_ d.93.1.1 (A:) Shc adaptor protein {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Shc adaptor protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.8 bits (186), Expect = 2e-17
 Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 14/104 (13%)

Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 347
           W+ G ++R+EA+A+L   + NG FLVR+S T  G YVL   ++ +  H ++      + +
Sbjct: 9   WFHGKLSRREAEALL---QLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLV-----DPE 60

Query: 348 TCYKIGDKTFSDLPSLLAFYKVHYLDTSP------LIKPATKTI 385
              +  D  F  +  L++++  ++L          L +P  + +
Sbjct: 61  GVVRTKDHRFESVSHLISYHMDNHLPIISAGSELCLQQPVERKL 104

>d1rjaa_ d.93.1.1 (A:) Tyrosine-protein kinase 6 (Breast tumor kinase, Brk) {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase 6 (Breast tumor kinase, Brk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.5 bits (185), Expect = 2e-17
 Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 5/98 (5%)

Query: 13  WYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 71
           W+FG ++R EA   L +E    GAFL+R S     +YVL V++   V HY   KI     
Sbjct: 4   WFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHY---KIWRRAG 60

Query: 72  QTCYKIGDKTFSDLPSLLAFYKVHYL-DTSPLIKPATK 108
              +     +F  LP L+ +++   L     L  P  K
Sbjct: 61  GRLHLNEAVSFLSLPELVNYHRAQSLSHGLRLAAPCRK 98

>d1rjaa_ d.93.1.1 (A:) Tyrosine-protein kinase 6 (Breast tumor kinase, Brk) {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase 6 (Breast tumor kinase, Brk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.5 bits (185), Expect = 2e-17
 Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 5/98 (5%)

Query: 288 WYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 346
           W+FG ++R EA   L +E    GAFL+R S     +YVL V++   V HY   KI     
Sbjct: 4   WFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHY---KIWRRAG 60

Query: 347 QTCYKIGDKTFSDLPSLLAFYKVHYL-DTSPLIKPATK 383
              +     +F  LP L+ +++   L     L  P  K
Sbjct: 61  GRLHLNEAVSFLSLPELVNYHRAQSLSHGLRLAAPCRK 98

>d2oq1a1 d.93.1.1 (A:5-134) Tyrosine-protein kinase zap-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase zap-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.2 bits (187), Expect = 3e-17
 Identities = 28/106 (26%), Positives = 41/106 (38%), Gaps = 7/106 (6%)

Query: 6   DPHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 64
           DP     +++G ++R EA+  L      +G FL+R     LG YVL +  + +  H+   
Sbjct: 1   DPAAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHF--- 57

Query: 65  KITNTEQQTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 108
            I      T    G K       L  FY      L    L KP  +
Sbjct: 58  PIERQLNGTYAIAGGKAHCGPAELCEFYSRDPDGLPC-NLRKPCNR 102

>d2oq1a1 d.93.1.1 (A:5-134) Tyrosine-protein kinase zap-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase zap-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.2 bits (187), Expect = 3e-17
 Identities = 28/106 (26%), Positives = 41/106 (38%), Gaps = 7/106 (6%)

Query: 281 DPHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 339
           DP     +++G ++R EA+  L      +G FL+R     LG YVL +  + +  H+   
Sbjct: 1   DPAAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHF--- 57

Query: 340 KITNTEQQTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 383
            I      T    G K       L  FY      L    L KP  +
Sbjct: 58  PIERQLNGTYAIAGGKAHCGPAELCEFYSRDPDGLPC-NLRKPCNR 102

>d2oq1a2 d.93.1.1 (A:135-258) Tyrosine-protein kinase zap-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase zap-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.1 bits (184), Expect = 5e-17
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 5/89 (5%)

Query: 8   HDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI 66
           H+R  WY   +TR+EA+  L S  + +G FL+R      G Y L +     V HY    I
Sbjct: 26  HERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRKEQ-GTYALSLIYGKTVYHY---LI 81

Query: 67  TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
           +  +           F  L  L+ + K+ 
Sbjct: 82  SQDKAGKYCIPEGTKFDTLWQLVEYLKLK 110

>d2oq1a2 d.93.1.1 (A:135-258) Tyrosine-protein kinase zap-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase zap-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.1 bits (184), Expect = 5e-17
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 5/89 (5%)

Query: 283 HDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI 341
           H+R  WY   +TR+EA+  L S  + +G FL+R      G Y L +     V HY    I
Sbjct: 26  HERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRKEQ-GTYALSLIYGKTVYHY---LI 81

Query: 342 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 370
           +  +           F  L  L+ + K+ 
Sbjct: 82  SQDKAGKYCIPEGTKFDTLWQLVEYLKLK 110

>d1o48a_ d.93.1.1 (A:) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.3 bits (182), Expect = 7e-17
 Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 3/86 (3%)

Query: 13 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVL--CVKENNKVSHYIINKITNT 69
          WYFG +TR+E++ +LL+ E   G FLVR+S T  G Y L     +N K  +    KI   
Sbjct: 7  WYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 66

Query: 70 EQQTCYKIGDKTFSDLPSLLAFYKVH 95
          +    Y      F+ L  L+A+Y  H
Sbjct: 67 DSGGFYITSRTQFNSLQQLVAYYSKH 92

>d1o48a_ d.93.1.1 (A:) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.3 bits (182), Expect = 7e-17
 Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 3/86 (3%)

Query: 288 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVL--CVKENNKVSHYIINKITNT 344
           WYFG +TR+E++ +LL+ E   G FLVR+S T  G Y L     +N K  +    KI   
Sbjct: 7   WYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 66

Query: 345 EQQTCYKIGDKTFSDLPSLLAFYKVH 370
           +    Y      F+ L  L+A+Y  H
Sbjct: 67  DSGGFYITSRTQFNSLQQLVAYYSKH 92

>d1lkka_ d.93.1.1 (A:) p56-lck tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: p56-lck tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.9 bits (181), Expect = 9e-17
 Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 3/86 (3%)

Query: 13 WYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN--KITNT 69
          W+F  ++R++A+  LL+    +G+FL+R+S +  G++ L V++ ++    ++   KI N 
Sbjct: 6  WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNL 65

Query: 70 EQQTCYKIGDKTFSDLPSLLAFYKVH 95
          +    Y     TF  L  L+  Y   
Sbjct: 66 DNGGFYISPRITFPGLHELVRHYTNA 91

>d1lkka_ d.93.1.1 (A:) p56-lck tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: p56-lck tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.9 bits (181), Expect = 9e-17
 Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 3/86 (3%)

Query: 288 WYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN--KITNT 344
           W+F  ++R++A+  LL+    +G+FL+R+S +  G++ L V++ ++    ++   KI N 
Sbjct: 6   WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNL 65

Query: 345 EQQTCYKIGDKTFSDLPSLLAFYKVH 370
           +    Y     TF  L  L+  Y   
Sbjct: 66  DNGGFYISPRITFPGLHELVRHYTNA 91

>d1k9aa2 d.93.1.1 (A:77-177) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.5 bits (180), Expect = 1e-16
 Identities = 33/98 (33%), Positives = 44/98 (44%), Gaps = 8/98 (8%)

Query: 13  WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
           W+ G +TR++A+  LL   + G FLVR+S    G+Y LCV    KV HY I         
Sbjct: 6   WFHGKITREQAER-LLYPPETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMY----HAS 60

Query: 73  TCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 108
                 +  F +L  L+  Y      L T  LIKP   
Sbjct: 61  KLSIDEEVYFENLMQLVEHYTTDADGLCT-RLIKPKVM 97

>d1k9aa2 d.93.1.1 (A:77-177) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.5 bits (180), Expect = 1e-16
 Identities = 33/98 (33%), Positives = 44/98 (44%), Gaps = 8/98 (8%)

Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 347
           W+ G +TR++A+  LL   + G FLVR+S    G+Y LCV    KV HY I         
Sbjct: 6   WFHGKITREQAER-LLYPPETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMY----HAS 60

Query: 348 TCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 383
                 +  F +L  L+  Y      L T  LIKP   
Sbjct: 61  KLSIDEEVYFENLMQLVEHYTTDADGLCT-RLIKPKVM 97

>d1uura3 d.93.1.1 (A:577-707) STAT homologue {Dictyostelium discoideum [TaxId: 44689]} Length = 131

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT homologue
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 74.6 bits (183), Expect = 1e-16
 Identities = 22/110 (20%), Positives = 36/110 (32%), Gaps = 12/110 (10%)

Query: 7   PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVK---ENNKVSHYII 63
              +    +G M RQE     L  +D G F++R S    G + +         ++ HY++
Sbjct: 5   TLWQEGIIYGYMGRQEVND-ALQNQDPGTFIIRFSERNPGQFGIAYIGVEMPARIKHYLV 63

Query: 64  NKITNTEQQTCYKIGDKTFSD-LPSLLAFYKVHYLDTSPLIKPATKTIEK 112
                   +       KTF D L     F  +          P    + K
Sbjct: 64  QPNDTAAAK-------KTFPDFLSEHSQFVNLLQWTKDTNGAPRFLKLHK 106

>d1uura3 d.93.1.1 (A:577-707) STAT homologue {Dictyostelium discoideum [TaxId: 44689]} Length = 131

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT homologue
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 74.6 bits (183), Expect = 1e-16
 Identities = 22/110 (20%), Positives = 36/110 (32%), Gaps = 12/110 (10%)

Query: 282 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVK---ENNKVSHYII 338
              +    +G M RQE     L  +D G F++R S    G + +         ++ HY++
Sbjct: 5   TLWQEGIIYGYMGRQEVND-ALQNQDPGTFIIRFSERNPGQFGIAYIGVEMPARIKHYLV 63

Query: 339 NKITNTEQQTCYKIGDKTFSD-LPSLLAFYKVHYLDTSPLIKPATKTIEK 387
                   +       KTF D L     F  +          P    + K
Sbjct: 64  QPNDTAAAK-------KTFPDFLSEHSQFVNLLQWTKDTNGAPRFLKLHK 106

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.5 bits (178), Expect = 1e-16
 Identities = 20/58 (34%), Positives = 30/58 (51%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
           E V+A YDF   +  DL  ++    I++ K++ HWW A++  G  G IP  YV     
Sbjct: 3   EIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKKS 60

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.5 bits (178), Expect = 1e-16
 Identities = 20/58 (34%), Positives = 30/58 (51%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 443
           E V+A YDF   +  DL  ++    I++ K++ HWW A++  G  G IP  YV     
Sbjct: 3   EIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKKS 60

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.4 bits (92), Expect = 5e-05
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEG-ELNGKTGHFPFTHVEFIPTNE 266
            A +   L+LE G    + + N    W   +  G  G+ P  +V    +N 
Sbjct: 12  QATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKKSNN 62

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.4 bits (92), Expect = 5e-05
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 492 NAYDKTALKLEIGDIIKVTKTNINGQWEG-ELNGKTGHFPFTHVEFIPTNE 541
            A +   L+LE G    + + N    W   +  G  G+ P  +V    +N 
Sbjct: 12  QATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKKSNN 62

>d1xa6a2 d.93.1.1 (A:21-161) Beta-chimaerin, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Beta-chimaerin, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.2 bits (182), Expect = 2e-16
 Identities = 20/96 (20%), Positives = 44/96 (45%), Gaps = 9/96 (9%)

Query: 7   PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI 66
           P      + G+++R++A  +L      GA+++R+S    G Y L ++  N+  +Y +   
Sbjct: 31  PKYYGREFHGIISREQADELL--GGVEGAYILRESQRQPGCYTLALRFGNQTLNYRL--- 85

Query: 67  TNTEQQTCYKIGDKTFSDLPSLLAFYKV-HYLDTSP 101
                   + +G+K F  +  L+    +  Y++T  
Sbjct: 86  ---FHDGKHFVGEKRFESIHDLVTDGLITLYIETKA 118

>d1xa6a2 d.93.1.1 (A:21-161) Beta-chimaerin, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Beta-chimaerin, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.2 bits (182), Expect = 2e-16
 Identities = 20/96 (20%), Positives = 44/96 (45%), Gaps = 9/96 (9%)

Query: 282 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI 341
           P      + G+++R++A  +L      GA+++R+S    G Y L ++  N+  +Y +   
Sbjct: 31  PKYYGREFHGIISREQADELL--GGVEGAYILRESQRQPGCYTLALRFGNQTLNYRL--- 85

Query: 342 TNTEQQTCYKIGDKTFSDLPSLLAFYKV-HYLDTSP 376
                   + +G+K F  +  L+    +  Y++T  
Sbjct: 86  ---FHDGKHFVGEKRFESIHDLVTDGLITLYIETKA 118

>d1qcfa2 d.93.1.1 (A:146-248) Hemopoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Hemopoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.7 bits (175), Expect = 5e-16
 Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 6/102 (5%)

Query: 13  WYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN--KITNT 69
           W+F  ++R++A+  LL+     G+F++RDS T  G+Y L V++ +      +   KI   
Sbjct: 3   WFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTL 62

Query: 70  EQQTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATKT 109
           +    Y     TFS L  L+  YK     L    L  P   +
Sbjct: 63  DNGGFYISPRSTFSTLQELVDHYKKGNDGLCQ-KLSVPCMSS 103

>d1qcfa2 d.93.1.1 (A:146-248) Hemopoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Hemopoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.7 bits (175), Expect = 5e-16
 Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 6/102 (5%)

Query: 288 WYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN--KITNT 344
           W+F  ++R++A+  LL+     G+F++RDS T  G+Y L V++ +      +   KI   
Sbjct: 3   WFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTL 62

Query: 345 EQQTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATKT 384
           +    Y     TFS L  L+  YK     L    L  P   +
Sbjct: 63  DNGGFYISPRSTFSTLQELVDHYKKGNDGLCQ-KLSVPCMSS 103

>d1luia_ d.93.1.1 (A:) Itk/tsk protein tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 108

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Itk/tsk protein tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.6 bits (175), Expect = 6e-16
 Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 9/107 (8%)

Query: 6   DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
           +  +   WY   ++R +A+ +LL     GAF+VRDS T  G Y + V     +S     K
Sbjct: 1   NNLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRTP-GTYTVSVFTKAIISENPCIK 59

Query: 66  -----ITNTEQQTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKP 105
                 TN   +  Y      F  +P L+ +++ +   L T  L  P
Sbjct: 60  HYHIKETNDSPKRYYVAEKYVFDSIPLLIQYHQYNGGGLVT-RLRYP 105

>d1luia_ d.93.1.1 (A:) Itk/tsk protein tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 108

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Itk/tsk protein tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.6 bits (175), Expect = 6e-16
 Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 9/107 (8%)

Query: 281 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 340
           +  +   WY   ++R +A+ +LL     GAF+VRDS T  G Y + V     +S     K
Sbjct: 1   NNLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRTP-GTYTVSVFTKAIISENPCIK 59

Query: 341 -----ITNTEQQTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKP 380
                 TN   +  Y      F  +P L+ +++ +   L T  L  P
Sbjct: 60  HYHIKETNDSPKRYYVAEKYVFDSIPLLIQYHQYNGGGLVT-RLRYP 105

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.2 bits (172), Expect = 7e-16
 Identities = 16/60 (26%), Positives = 24/60 (40%)

Query: 109 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
               V A +D+     D+L F K+ I+  V K E  WW       +    P  YV++   
Sbjct: 5   FKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVN 64

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.2 bits (172), Expect = 7e-16
 Identities = 16/60 (26%), Positives = 24/60 (40%)

Query: 384 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 443
               V A +D+     D+L F K+ I+  V K E  WW       +    P  YV++   
Sbjct: 5   FKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVN 64

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (102), Expect = 2e-06
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKT-GHFPFTHVEFIPTNETM 268
            A  +  L      II+  +    G W G+  GK    FP  +VE +   E +
Sbjct: 16  KAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVNPEGI 68

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (101), Expect = 3e-06
 Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 492 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKT-GHFPFTHVEFIPTNET 542
            A  +  L      II+  +    G W G+  GK    FP  +VE +   E 
Sbjct: 16  KAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVNPEG 67

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (171), Expect = 8e-16
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 107 TKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEE--HWWTAQNISGEVGSIPVPYVQ 164
           ++ +  V   Y F     ++L F+K + + V+ K E    WW  +N  G+VG +P  YV 
Sbjct: 3   SRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVV 62

Query: 165 KYSEGMSI 172
             S+G ++
Sbjct: 63  VLSDGPAL 70

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (171), Expect = 8e-16
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 382 TKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEE--HWWTAQNISGEVGSIPVPYVQ 439
           ++ +  V   Y F     ++L F+K + + V+ K E    WW  +N  G+VG +P  YV 
Sbjct: 3   SRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVV 62

Query: 440 KYSEGMSI 447
             S+G ++
Sbjct: 63  VLSDGPAL 70

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (88), Expect = 2e-04
 Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 217 NAYDKTALKLEIGDIIKVT-KTNINGQW--EGELNGKTGHFPFTHVEFIPTNETM 268
           ++  +  L  E G+ ++V  K   + +W       G+ G  P  +V  +     +
Sbjct: 16  SSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDGPAL 70

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (84), Expect = 6e-04
 Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 492 NAYDKTALKLEIGDIIKVT-KTNINGQW--EGELNGKTGHFPFTHVEFIP 538
           ++  +  L  E G+ ++V  K   + +W       G+ G  P  +V  + 
Sbjct: 16  SSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLS 65

>d1blja_ d.93.1.1 (A:) P55 Blk protein tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: P55 Blk protein tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.3 bits (174), Expect = 9e-16
 Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 6  DPHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 64
          +  +   W+F  ++R++A+  LL+     G+FL+R+S +  G + L VK+       + +
Sbjct: 7  ETLEVEKWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEVVKH 66

Query: 65 -KITNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
           KI + +    Y     TF  L +L+  Y   
Sbjct: 67 YKIRSLDNGGYYISPRITFPTLQALVQHYSKK 98

>d1blja_ d.93.1.1 (A:) P55 Blk protein tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: P55 Blk protein tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.3 bits (174), Expect = 9e-16
 Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 281 DPHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 339
           +  +   W+F  ++R++A+  LL+     G+FL+R+S +  G + L VK+       + +
Sbjct: 7   ETLEVEKWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEVVKH 66

Query: 340 -KITNTEQQTCYKIGDKTFSDLPSLLAFYKVH 370
            KI + +    Y     TF  L +L+  Y   
Sbjct: 67  YKIRSLDNGGYYISPRITFPTLQALVQHYSKK 98

>d1a81a2 d.93.1.1 (A:138-262) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Syk tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.3 bits (174), Expect = 1e-15
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 5/91 (5%)

Query: 6   DPHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 64
             H++  W+ G ++R+E++ I+L   K NG FL+R  +   G+Y LC+    KV HY   
Sbjct: 24  TAHEKMPWFHGKISREESEQIVLIGSKTNGKFLIRARDNN-GSYALCLLHEGKVLHY--- 79

Query: 65  KITNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
           +I   +         K F  L  L+  Y   
Sbjct: 80  RIDKDKTGKLSIPEGKKFDTLWQLVEHYSYK 110

>d1a81a2 d.93.1.1 (A:138-262) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Syk tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.3 bits (174), Expect = 1e-15
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 5/91 (5%)

Query: 281 DPHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 339
             H++  W+ G ++R+E++ I+L   K NG FL+R  +   G+Y LC+    KV HY   
Sbjct: 24  TAHEKMPWFHGKISREESEQIVLIGSKTNGKFLIRARDNN-GSYALCLLHEGKVLHY--- 79

Query: 340 KITNTEQQTCYKIGDKTFSDLPSLLAFYKVH 370
           +I   +         K F  L  L+  Y   
Sbjct: 80  RIDKDKTGKLSIPEGKKFDTLWQLVEHYSYK 110

>d1g83a2 d.93.1.1 (A:142-245) Tyrosine kinase Fyn {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine kinase Fyn
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.5 bits (172), Expect = 1e-15
 Identities = 31/105 (29%), Positives = 43/105 (40%), Gaps = 6/105 (5%)

Query: 6   DPHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLC--VKENNKVSHYI 62
           D      WYFG + R++A+  LLS     G FL+R+S T  G Y L     ++ K  H  
Sbjct: 1   DSIQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVK 60

Query: 63  INKITNTEQQTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKP 105
             KI   +    Y      F  L  L+  Y      L +  L+ P
Sbjct: 61  HYKIRKLDNGGYYITTRAQFETLQQLVQHYSERAAGLSS-RLVVP 104

>d1g83a2 d.93.1.1 (A:142-245) Tyrosine kinase Fyn {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine kinase Fyn
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.5 bits (172), Expect = 1e-15
 Identities = 31/105 (29%), Positives = 43/105 (40%), Gaps = 6/105 (5%)

Query: 281 DPHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLC--VKENNKVSHYI 337
           D      WYFG + R++A+  LLS     G FL+R+S T  G Y L     ++ K  H  
Sbjct: 1   DSIQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVK 60

Query: 338 INKITNTEQQTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKP 380
             KI   +    Y      F  L  L+  Y      L +  L+ P
Sbjct: 61  HYKIRKLDNGGYYITTRAQFETLQQLVQHYSERAAGLSS-RLVVP 104

>d1fu6a_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 111

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phosphatidylinositol 3-kinase, p85-alpha subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 70.4 bits (172), Expect = 2e-15
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 12/104 (11%)

Query: 12  SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGN-YVLCVKENNKVSHYIINKITNTE 70
            WY+G ++R+E    L    D G FLVRD++T +   Y L +++        I       
Sbjct: 12  EWYWGDISREEVNEKLRDTAD-GTFLVRDASTKMHGDYTLTLRKGGNNKSIKI----FHR 66

Query: 71  QQTCYKIGDKTFSDLPSLLAFYKVHYLDTS------PLIKPATK 108
                     TF+ +  L+  Y+   L          L+ P +K
Sbjct: 67  DGKYGFSDPLTFNSVVELINHYRNESLAQYNPKLDVKLLYPVSK 110

>d1fu6a_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 111

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phosphatidylinositol 3-kinase, p85-alpha subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 70.4 bits (172), Expect = 2e-15
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 12/104 (11%)

Query: 287 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGN-YVLCVKENNKVSHYIINKITNTE 345
            WY+G ++R+E    L    D G FLVRD++T +   Y L +++        I       
Sbjct: 12  EWYWGDISREEVNEKLRDTAD-GTFLVRDASTKMHGDYTLTLRKGGNNKSIKI----FHR 66

Query: 346 QQTCYKIGDKTFSDLPSLLAFYKVHYLDTS------PLIKPATK 383
                     TF+ +  L+  Y+   L          L+ P +K
Sbjct: 67  DGKYGFSDPLTFNSVVELINHYRNESLAQYNPKLDVKLLYPVSK 110

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.0 bits (171), Expect = 2e-15
 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 98  DTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGS 157
            +S    PA   + +VIA YD+  N+ D+L F K  ++ V++KD+  WW  + I+G  G 
Sbjct: 22  PSSERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGE-INGVTGL 80

Query: 158 IPVPYVQKYSE 168
            P  YV+  ++
Sbjct: 81  FPSNYVKMTTD 91

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.0 bits (171), Expect = 2e-15
 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 373 DTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGS 432
            +S    PA   + +VIA YD+  N+ D+L F K  ++ V++KD+  WW  + I+G  G 
Sbjct: 22  PSSERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGE-INGVTGL 80

Query: 433 IPVPYVQKYSE 443
            P  YV+  ++
Sbjct: 81  FPSNYVKMTTD 91

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (128), Expect = 1e-09
 Identities = 32/121 (26%), Positives = 42/121 (34%), Gaps = 37/121 (30%)

Query: 152 SGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVK 211
           SG+ G  P  +V+               L  SS                E   PAF  V 
Sbjct: 6   SGQKGWFPASHVKL--------------LGPSS----------------ERATPAFHPVC 35

Query: 212 QVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNE 266
           QV     YD  A     L    G +I V   +    W+GE+NG TG FP  +V+    + 
Sbjct: 36  QVIA--MYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTDSS 93

Query: 267 T 267
            
Sbjct: 94  G 94

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (128), Expect = 1e-09
 Identities = 32/121 (26%), Positives = 42/121 (34%), Gaps = 37/121 (30%)

Query: 427 SGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVK 486
           SG+ G  P  +V+               L  SS                E   PAF  V 
Sbjct: 6   SGQKGWFPASHVKL--------------LGPSS----------------ERATPAFHPVC 35

Query: 487 QVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNE 541
           QV     YD  A     L    G +I V   +    W+GE+NG TG FP  +V+    + 
Sbjct: 36  QVIA--MYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTDSS 93

Query: 542 T 542
            
Sbjct: 94  G 94

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 55

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 68.2 bits (167), Expect = 2e-15
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           E V+A YD+    P ++  KK DIL +++   + WW  + ++   G +P  YV+K
Sbjct: 1   ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKK 54

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 55

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 68.2 bits (167), Expect = 2e-15
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 440
           E V+A YD+    P ++  KK DIL +++   + WW  + ++   G +P  YV+K
Sbjct: 1   ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKK 54

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 55

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.5 bits (108), Expect = 2e-07
 Identities = 9/46 (19%), Positives = 21/46 (45%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
                  + ++ GDI+ +  +     W+ E+N + G  P  +V+ +
Sbjct: 10  QEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 55

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 55

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.5 bits (108), Expect = 2e-07
 Identities = 9/46 (19%), Positives = 21/46 (45%)

Query: 492 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 537
                  + ++ GDI+ +  +     W+ E+N + G  P  +V+ +
Sbjct: 10  QEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 55

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.4 bits (165), Expect = 5e-15
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQK 165
            +A YD++    DDL F K +   +++  E  WW A+++ +GE G IP  YV  
Sbjct: 3   FVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 56

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.4 bits (165), Expect = 5e-15
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQK 440
            +A YD++    DDL F K +   +++  E  WW A+++ +GE G IP  YV  
Sbjct: 3   FVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 56

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (85), Expect = 4e-04
 Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVE 260
            A  +  L    G+  ++  ++    WE      G+TG+ P  +V 
Sbjct: 10  EAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVA 55

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (85), Expect = 4e-04
 Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 492 NAYDKTALKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVE 535
            A  +  L    G+  ++  ++    WE      G+TG+ P  +V 
Sbjct: 10  EAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVA 55

>d2izva2 d.93.1.1 (A:274-385) Suppressor of cytokine signaling 4, SOCS-4 {Human (Homo sapiens) [TaxId: 9606]} Length = 112

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Suppressor of cytokine signaling 4, SOCS-4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.3 bits (169), Expect = 5e-15
 Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 8/106 (7%)

Query: 7   PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI 66
             + N  Y+G+M +  A+A LL  K  G FL+RDS      + +  +  ++  H  I + 
Sbjct: 7   QINNNPCYWGVMDKYAAEA-LLEGKPEGTFLLRDSAQEDYLFSVSFRRYSRSLHARIEQW 65

Query: 67  TNTEQQTCYKIGDKTFSDLPSLLAFYK-------VHYLDTSPLIKP 105
            +      +        D+  LL  YK          L ++PLI+ 
Sbjct: 66  NHNFSFDAHDPCVFHSPDITGLLEHYKDPSACMFFEPLLSTPLIRT 111

>d2izva2 d.93.1.1 (A:274-385) Suppressor of cytokine signaling 4, SOCS-4 {Human (Homo sapiens) [TaxId: 9606]} Length = 112

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Suppressor of cytokine signaling 4, SOCS-4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.3 bits (169), Expect = 5e-15
 Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 8/106 (7%)

Query: 282 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI 341
             + N  Y+G+M +  A+A LL  K  G FL+RDS      + +  +  ++  H  I + 
Sbjct: 7   QINNNPCYWGVMDKYAAEA-LLEGKPEGTFLLRDSAQEDYLFSVSFRRYSRSLHARIEQW 65

Query: 342 TNTEQQTCYKIGDKTFSDLPSLLAFYK-------VHYLDTSPLIKP 380
            +      +        D+  LL  YK          L ++PLI+ 
Sbjct: 66  NHNFSFDAHDPCVFHSPDITGLLEHYKDPSACMFFEPLLSTPLIRT 111

>d1a81a1 d.93.1.1 (A:9-137) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 129

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Syk tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.3 bits (169), Expect = 6e-15
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 4/89 (4%)

Query: 8  HDRNSWYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI 66
           +   ++FG +TR+EA+  L+     +G +L+R S   LG + L V    K  HY    I
Sbjct: 2  ANHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHY---TI 58

Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
                T    G +T +    L  ++   
Sbjct: 59 ERELNGTYAIAGGRTHASPADLCHYHSQE 87

>d1a81a1 d.93.1.1 (A:9-137) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 129

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Syk tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.3 bits (169), Expect = 6e-15
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 4/89 (4%)

Query: 283 HDRNSWYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI 341
            +   ++FG +TR+EA+  L+     +G +L+R S   LG + L V    K  HY    I
Sbjct: 2   ANHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHY---TI 58

Query: 342 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 370
                 T    G +T +    L  ++   
Sbjct: 59  ERELNGTYAIAGGRTHASPADLCHYHSQE 87

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

 Score = 66.6 bits (163), Expect = 9e-15
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
           V A +DF+  +  +L FK+ D++ +++KD+ +WW  Q  +   G  P  YV  Y+
Sbjct: 5   VQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQL-NNRRGIFPSNYVCPYN 58

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

 Score = 66.6 bits (163), Expect = 9e-15
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 442
           V A +DF+  +  +L FK+ D++ +++KD+ +WW  Q  +   G  P  YV  Y+
Sbjct: 5   VQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQL-NNRRGIFPSNYVCPYN 58

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

 Score = 46.2 bits (110), Expect = 1e-07
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 5/47 (10%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
           +D        L  + GD+I +   +    WEG+LN + G FP  +V 
Sbjct: 9   FDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVC 55

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

 Score = 46.2 bits (110), Expect = 1e-07
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 5/47 (10%)

Query: 494 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 535
           +D        L  + GD+I +   +    WEG+LN + G FP  +V 
Sbjct: 9   FDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVC 55

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (163), Expect = 9e-15
 Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSK-DEEHWWTAQNISGEVGSIPVPYVQKYSE 168
           + IAKY+F G    DLPF K D+L +V+   + +W+ A+N  G  G IP  YVQK   
Sbjct: 8   ECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREG 65

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (163), Expect = 9e-15
 Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSK-DEEHWWTAQNISGEVGSIPVPYVQKYSE 443
           + IAKY+F G    DLPF K D+L +V+   + +W+ A+N  G  G IP  YVQK   
Sbjct: 8   ECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREG 65

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (83), Expect = 8e-04
 Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 2/55 (3%)

Query: 217 NAYDKTALKLEIGDIIK-VTKTNINGQWEGEL-NGKTGHFPFTHVEFIPTNETMP 269
           +   +  L    GD++  V  T     ++ +   G+ G  P  +V+     +   
Sbjct: 16  HGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREGVKAGT 70

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (80), Expect = 0.002
 Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 492 NAYDKTALKLEIGDIIK-VTKTNINGQWEGEL-NGKTGHFPFTHVEFIP 538
           +   +  L    GD++  V  T     ++ +   G+ G  P  +V+   
Sbjct: 16  HGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKRE 64

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.3 bits (162), Expect = 1e-14
 Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 108 KTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           K   +V A + ++   P+DL F++ DI++V+SK  E W   ++  G+VG  P  +V+ 
Sbjct: 3   KKGSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGES-KGKVGIFPKVFVED 59

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.3 bits (162), Expect = 1e-14
 Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 383 KTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 440
           K   +V A + ++   P+DL F++ DI++V+SK  E W   ++  G+VG  P  +V+ 
Sbjct: 3   KKGSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGES-KGKVGIFPKVFVED 59

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (122), Expect = 3e-09
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 7/59 (11%)

Query: 211 KQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT 264
            QV     +   A     L+ + GDII V         EGE  GK G FP   VE   T
Sbjct: 6   SQVEA--LFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDSAT 62

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (122), Expect = 3e-09
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 7/59 (11%)

Query: 486 KQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT 539
            QV     +   A     L+ + GDII V         EGE  GK G FP   VE   T
Sbjct: 6   SQVEA--LFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDSAT 62

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.3 bits (162), Expect = 1e-14
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM 170
           E+ IA Y +   +P DL F + + ++V  KD E WWT        G  P  YV+    G 
Sbjct: 9   EEYIALYPYSSVEPGDLTFTEGEEILVTQKDGE-WWTGSI-GDRSGIFPSNYVKPKDSGP 66

Query: 171 S 171
           S
Sbjct: 67  S 67

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.3 bits (162), Expect = 1e-14
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM 445
           E+ IA Y +   +P DL F + + ++V  KD E WWT        G  P  YV+    G 
Sbjct: 9   EEYIALYPYSSVEPGDLTFTEGEEILVTQKDGE-WWTGSI-GDRSGIFPSNYVKPKDSGP 66

Query: 446 S 446
           S
Sbjct: 67  S 67

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (112), Expect = 9e-08
 Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 492 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS 543
           ++ +   L    G+ I VT+ +    W G +  ++G FP  +V+   +  +S
Sbjct: 18  SSVEPGDLTFTEGEEILVTQKD-GEWWTGSIGDRSGIFPSNYVKPKDSGPSS 68

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (106), Expect = 6e-07
 Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET 267
           ++ +   L    G+ I VT+ +    W G +  ++G FP  +V+   +  +
Sbjct: 18  SSVEPGDLTFTEGEEILVTQKD-GEWWTGSIGDRSGIFPSNYVKPKDSGPS 67

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

 Score = 65.7 bits (160), Expect = 2e-14
 Identities = 18/53 (33%), Positives = 29/53 (54%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           VIA YD+  NDP +L  + ++   ++   E HWW  Q+ +G  G  P  Y+ +
Sbjct: 1   VIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVE 53

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

 Score = 65.7 bits (160), Expect = 2e-14
 Identities = 18/53 (33%), Positives = 29/53 (54%)

Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 440
           VIA YD+  NDP +L  + ++   ++   E HWW  Q+ +G  G  P  Y+ +
Sbjct: 1   VIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVE 53

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.5 bits (160), Expect = 2e-14
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           V A +DFD  +  +L F++ D + V+   + +WW      G+ G  P  YV  
Sbjct: 4   VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGAC-HGQTGMFPRNYVTP 55

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.5 bits (160), Expect = 2e-14
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 440
           V A +DFD  +  +L F++ D + V+   + +WW      G+ G  P  YV  
Sbjct: 4   VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGAC-HGQTGMFPRNYVTP 55

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (111), Expect = 9e-08
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 5/47 (10%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
           +D        L    GD I V   +    W+G  +G+TG FP  +V 
Sbjct: 8   FDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVT 54

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (111), Expect = 9e-08
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 5/47 (10%)

Query: 494 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 535
           +D        L    GD I V   +    W+G  +G+TG FP  +V 
Sbjct: 8   FDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVT 54

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.4 bits (164), Expect = 2e-14
 Identities = 19/115 (16%), Positives = 44/115 (38%), Gaps = 13/115 (11%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM 170
           E  +A   +   + D++   + + + V+ K  + WW  +      G  P  Y+QK  +  
Sbjct: 15  EPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRK-DDVTGYFPSMYLQKSGQ-- 71

Query: 171 SILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALK 225
                     D S      ++  P R++ +        R ++    +AY + +++
Sbjct: 72  ----------DVSQAQRQIKRGAPPRRSSIRNAHSIHQRSRKRLSQDAYRRNSVR 116

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.4 bits (164), Expect = 2e-14
 Identities = 19/115 (16%), Positives = 44/115 (38%), Gaps = 13/115 (11%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM 445
           E  +A   +   + D++   + + + V+ K  + WW  +      G  P  Y+QK  +  
Sbjct: 15  EPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRK-DDVTGYFPSMYLQKSGQ-- 71

Query: 446 SILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALK 500
                     D S      ++  P R++ +        R ++    +AY + +++
Sbjct: 72  ----------DVSQAQRQIKRGAPPRRSSIRNAHSIHQRSRKRLSQDAYRRNSVR 116

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (101), Expect = 7e-06
 Identities = 10/56 (17%), Positives = 25/56 (44%)

Query: 492 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETN 547
            A +   + L  G+ ++V    ++G W    +  TG+FP  +++    + +  +  
Sbjct: 24  TAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQDVSQAQRQ 79

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (100), Expect = 9e-06
 Identities = 10/59 (16%), Positives = 25/59 (42%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETMPFHSSMK 275
            A +   + L  G+ ++V    ++G W    +  TG+FP  +++    + +       +
Sbjct: 24  TAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQDVSQAQRQIKR 82

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.5 bits (160), Expect = 2e-14
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           +V A YDF+  + ++L FK  +++ V+   + +WW  +N     G  P  +V 
Sbjct: 4   RVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGEN-HRGTGLFPSNFVT 55

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.5 bits (160), Expect = 2e-14
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
           +V A YDF+  + ++L FK  +++ V+   + +WW  +N     G  P  +V 
Sbjct: 4   RVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGEN-HRGTGLFPSNFVT 55

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.7 bits (106), Expect = 4e-07
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 5/47 (10%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
           YD  A     L  + G++I V   +    W+GE +  TG FP   V 
Sbjct: 9   YDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVT 55

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.7 bits (106), Expect = 4e-07
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 5/47 (10%)

Query: 494 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 535
           YD  A     L  + G++I V   +    W+GE +  TG FP   V 
Sbjct: 9   YDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVT 55

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.6 bits (160), Expect = 2e-14
 Identities = 16/53 (30%), Positives = 28/53 (52%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           VIA + ++ +   DL F+K + L ++ +  E W      +G+ G IP  +V K
Sbjct: 9   VIALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFVAK 61

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.6 bits (160), Expect = 2e-14
 Identities = 16/53 (30%), Positives = 28/53 (52%)

Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 440
           VIA + ++ +   DL F+K + L ++ +  E W      +G+ G IP  +V K
Sbjct: 9   VIALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFVAK 61

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (82), Expect = 9e-04
 Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 1/45 (2%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQW-EGELNGKTGHFPFTHVE 260
                  L  E G+ +++ + +      +    G+ G  PF  V 
Sbjct: 16  EPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFVA 60

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (82), Expect = 9e-04
 Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 1/45 (2%)

Query: 492 NAYDKTALKLEIGDIIKVTKTNINGQW-EGELNGKTGHFPFTHVE 535
                  L  E G+ +++ + +      +    G+ G  PF  V 
Sbjct: 16  EPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFVA 60

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 64

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (159), Expect = 3e-14
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQKYSE 168
           +   +A YD++     DL FKK + L +V+  E  WW A ++S G+ G IP  YV     
Sbjct: 2   VTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDS 61

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 64

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (159), Expect = 3e-14
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQKYSE 443
           +   +A YD++     DL FKK + L +V+  E  WW A ++S G+ G IP  YV     
Sbjct: 2   VTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDS 61

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 64

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (88), Expect = 2e-04
 Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIPTNE 266
            +  +T L  + G+ +++        W       G+TG+ P  +V    + +
Sbjct: 12  ESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQ 63

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 64

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (88), Expect = 2e-04
 Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 492 NAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIPTNE 541
            +  +T L  + G+ +++        W       G+TG+ P  +V    + +
Sbjct: 12  ESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQ 63

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (159), Expect = 3e-14
 Identities = 17/53 (32%), Positives = 29/53 (54%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           V+A YD++    +DL F+K D ++V+ +  E W      + + G IP  YV +
Sbjct: 7   VVALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVAR 59

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (159), Expect = 3e-14
 Identities = 17/53 (32%), Positives = 29/53 (54%)

Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 440
           V+A YD++    +DL F+K D ++V+ +  E W      + + G IP  YV +
Sbjct: 7   VVALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVAR 59

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (95), Expect = 2e-05
 Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQW-EGELNGKTGHFPFTHVEFIPTNET 267
            A     L  + GD + V + +            K G+ P  +V  + + ET
Sbjct: 14  EAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARVDSLET 65

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (95), Expect = 2e-05
 Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 492 NAYDKTALKLEIGDIIKVTKTNINGQW-EGELNGKTGHFPFTHVEFIPTNET 542
            A     L  + GD + V + +            K G+ P  +V  + + ET
Sbjct: 14  EAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARVDSLET 65

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (159), Expect = 3e-14
 Identities = 16/62 (25%), Positives = 23/62 (37%)

Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG 169
             K  A Y        +L F    +   V   +E  W    ++G+ G IP  YV+  S  
Sbjct: 10  FRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFLSGP 69

Query: 170 MS 171
            S
Sbjct: 70  SS 71

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (159), Expect = 3e-14
 Identities = 16/62 (25%), Positives = 23/62 (37%)

Query: 385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG 444
             K  A Y        +L F    +   V   +E  W    ++G+ G IP  YV+  S  
Sbjct: 10  FRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFLSGP 69

Query: 445 MS 446
            S
Sbjct: 70  SS 71

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (101), Expect = 3e-06
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 8/60 (13%)

Query: 210 VKQVRVPNAYDKTA-----LKLEIGDIIKVTK-TNINGQWEGELNGKTGHFPFTHVEFIP 263
            ++ +    Y   A     L    G +      +   G  EG LNGKTG  P  +VEF+ 
Sbjct: 10  FRKAKA--LYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFLS 67

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (101), Expect = 3e-06
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 8/60 (13%)

Query: 485 VKQVRVPNAYDKTA-----LKLEIGDIIKVTK-TNINGQWEGELNGKTGHFPFTHVEFIP 538
            ++ +    Y   A     L    G +      +   G  EG LNGKTG  P  +VEF+ 
Sbjct: 10  FRKAKA--LYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFLS 67

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.8 bits (158), Expect = 4e-14
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQ 164
             A+YD+D  + ++L F +ND +I +   ++ WW  +    G  G  P  YV 
Sbjct: 3   ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVS 55

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.8 bits (158), Expect = 4e-14
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQ 439
             A+YD+D  + ++L F +ND +I +   ++ WW  +    G  G  P  YV 
Sbjct: 3   ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVS 55

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (92), Expect = 4e-05
 Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 7/51 (13%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFI 262
           YD  A     L     D I   +   +  W GEL  +G  G FP  +V   
Sbjct: 7   YDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLG 57

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (92), Expect = 4e-05
 Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 7/51 (13%)

Query: 494 YDKTA-----LKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFI 537
           YD  A     L     D I   +   +  W GEL  +G  G FP  +V   
Sbjct: 7   YDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLG 57

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.3 bits (157), Expect = 5e-14
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           +    A YDF+  + D+L F+  +++ V+      WWT +    ++G  P  YV  
Sbjct: 1   VRWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRL-HNKLGLFPANYVAP 55

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.3 bits (157), Expect = 5e-14
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 440
           +    A YDF+  + D+L F+  +++ V+      WWT +    ++G  P  YV  
Sbjct: 1   VRWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRL-HNKLGLFPANYVAP 55

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.3 bits (118), Expect = 1e-08
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 7/56 (12%)

Query: 210 VKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
           V+  R    YD  A     L    G++++V  ++    W G L+ K G FP  +V 
Sbjct: 1   VRWARA--LYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVA 54

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.3 bits (118), Expect = 1e-08
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 7/56 (12%)

Query: 485 VKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 535
           V+  R    YD  A     L    G++++V  ++    W G L+ K G FP  +V 
Sbjct: 1   VRWARA--LYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVA 54

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (157), Expect = 6e-14
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQK 165
           +   A YD+   D D++ FK  D +I V   +E W       +G  G +P  YV+ 
Sbjct: 4   KIFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEA 59

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (157), Expect = 6e-14
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQK 440
           +   A YD+   D D++ FK  D +I V   +E W       +G  G +P  YV+ 
Sbjct: 4   KIFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEA 59

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (89), Expect = 1e-04
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFI 262
            A D   +  + GD I   +    G   G +   G+TG  P  +VE I
Sbjct: 13  MAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEAI 60

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (89), Expect = 1e-04
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 492 NAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFI 537
            A D   +  + GD I   +    G   G +   G+TG  P  +VE I
Sbjct: 13  MAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEAI 60

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (157), Expect = 7e-14
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
           V A+++F   + D+L   K DI+ V   +E  WW     +G  G  P  YV++   
Sbjct: 13  VKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTL-NGRTGWFPSNYVREIKS 67

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (157), Expect = 7e-14
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 443
           V A+++F   + D+L   K DI+ V   +E  WW     +G  G  P  YV++   
Sbjct: 13  VKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTL-NGRTGWFPSNYVREIKS 67

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (140), Expect = 2e-11
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 5/68 (7%)

Query: 486 KQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN 540
            Q+ V   ++        L +  GDII VT+    G WEG LNG+TG FP  +V  I ++
Sbjct: 9   HQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKSS 68

Query: 541 ETSVETNG 548
           E S  ++G
Sbjct: 69  ERSGPSSG 76

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (131), Expect = 2e-10
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 5/61 (8%)

Query: 211 KQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN 265
            Q+ V   ++        L +  GDII VT+    G WEG LNG+TG FP  +V  I ++
Sbjct: 9   HQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKSS 68

Query: 266 E 266
           E
Sbjct: 69  E 69

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.6 bits (155), Expect = 1e-13
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSK-DEEHWWTAQNISGEVGSIPVPYVQ 164
           K +A Y F G +  DLPF+K D++ ++ K D ++ W    ++G  G  P  YV+
Sbjct: 3   KAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVE 56

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.6 bits (155), Expect = 1e-13
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSK-DEEHWWTAQNISGEVGSIPVPYVQ 439
           K +A Y F G +  DLPF+K D++ ++ K D ++ W    ++G  G  P  YV+
Sbjct: 3   KAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVE 56

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.8 bits (101), Expect = 2e-06
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 7/51 (13%)

Query: 219 YDKTA-----LKLEIGDIIKVTK--TNINGQWEGELNGKTGHFPFTHVEFI 262
           Y         L    GD+I + K   + N  W G +NG+ G FP  +VE +
Sbjct: 8   YSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV 58

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.8 bits (101), Expect = 2e-06
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 7/51 (13%)

Query: 494 YDKTA-----LKLEIGDIIKVTK--TNINGQWEGELNGKTGHFPFTHVEFI 537
           Y         L    GD+I + K   + N  W G +NG+ G FP  +VE +
Sbjct: 8   YSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV 58

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.6 bits (155), Expect = 1e-13
 Identities = 20/53 (37%), Positives = 33/53 (62%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           + IAKYDF     D+L FK+ DIL V++++ +  W    ++G+ G IP  Y++
Sbjct: 2   EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIE 54

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.6 bits (155), Expect = 1e-13
 Identities = 20/53 (37%), Positives = 33/53 (62%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
           + IAKYDF     D+L FK+ DIL V++++ +  W    ++G+ G IP  Y++
Sbjct: 2   EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIE 54

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (96), Expect = 1e-05
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 6/48 (12%)

Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQW-EGELNGKTGHFPFTHVE 260
           YD  A     L  + GDI+KV     +  W + ELNGK G  P  ++E
Sbjct: 7   YDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIE 54

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (96), Expect = 1e-05
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 6/48 (12%)

Query: 494 YDKTA-----LKLEIGDIIKVTKTNINGQW-EGELNGKTGHFPFTHVE 535
           YD  A     L  + GDI+KV     +  W + ELNGK G  P  ++E
Sbjct: 7   YDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIE 54

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 66.3 bits (161), Expect = 1e-13
 Identities = 23/131 (17%), Positives = 38/131 (29%), Gaps = 13/131 (9%)

Query: 102 LIKPATK-TIEKVIAKYDFDGNDPD-------DLPFKKNDILIVVSKDEEHWWTAQNI-- 151
           L +  +K     V     + G   +        + F   D L +  K    WW  + +  
Sbjct: 14  LERAKSKPVAFAVKTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYNNDWWIGRLVKE 73

Query: 152 SGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVK 211
             E+G IP P   +          +  H   SS +        +            A+ K
Sbjct: 74  GCEIGFIPSPLRLENIRIQQEQKRKRFHGGKSSGN-SSSSLGEMVSGTFRATPTTTAKQK 132

Query: 212 QVRVPNA--YD 220
           Q    +   YD
Sbjct: 133 QKVTKHIPPYD 143

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 66.3 bits (161), Expect = 1e-13
 Identities = 23/131 (17%), Positives = 38/131 (29%), Gaps = 13/131 (9%)

Query: 377 LIKPATK-TIEKVIAKYDFDGNDPD-------DLPFKKNDILIVVSKDEEHWWTAQNI-- 426
           L +  +K     V     + G   +        + F   D L +  K    WW  + +  
Sbjct: 14  LERAKSKPVAFAVKTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYNNDWWIGRLVKE 73

Query: 427 SGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVK 486
             E+G IP P   +          +  H   SS +        +            A+ K
Sbjct: 74  GCEIGFIPSPLRLENIRIQQEQKRKRFHGGKSSGN-SSSSLGEMVSGTFRATPTTTAKQK 132

Query: 487 QVRVPNA--YD 495
           Q    +   YD
Sbjct: 133 QKVTKHIPPYD 143

>d2cs0a1 d.93.1.1 (A:8-113) Hematopoietic SH2 domain containing protein HSH2D {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Hematopoietic SH2 domain containing protein HSH2D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.6 bits (154), Expect = 4e-13
 Identities = 23/100 (23%), Positives = 49/100 (49%), Gaps = 8/100 (8%)

Query: 12  SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 71
            W+ G ++R++A+  LL  +  G+FL+R S++ +G Y L  K  +   H+    +   + 
Sbjct: 10  EWFHGAISREDAEN-LLESQPLGSFLIRVSHSHVG-YTLSYKAQSSCCHF---MVKLLDD 64

Query: 72  QTCYKIGD-KTFSDLPSLLAFYKVHYLDTSP--LIKPATK 108
            T    G+    + L +L+ F++   ++     L +P  +
Sbjct: 65  GTFMIPGEKVAHTSLDALVTFHQQKPIEPRRELLTQPCRQ 104

>d2cs0a1 d.93.1.1 (A:8-113) Hematopoietic SH2 domain containing protein HSH2D {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Hematopoietic SH2 domain containing protein HSH2D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.6 bits (154), Expect = 4e-13
 Identities = 23/100 (23%), Positives = 49/100 (49%), Gaps = 8/100 (8%)

Query: 287 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 346
            W+ G ++R++A+  LL  +  G+FL+R S++ +G Y L  K  +   H+    +   + 
Sbjct: 10  EWFHGAISREDAEN-LLESQPLGSFLIRVSHSHVG-YTLSYKAQSSCCHF---MVKLLDD 64

Query: 347 QTCYKIGD-KTFSDLPSLLAFYKVHYLDTSP--LIKPATK 383
            T    G+    + L +L+ F++   ++     L +P  +
Sbjct: 65  GTFMIPGEKVAHTSLDALVTFHQQKPIEPRRELLTQPCRQ 104

>d1bg1a3 d.93.1.1 (A:576-716) STAT3b {Mouse (Mus musculus) [TaxId: 10090]} Length = 141

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT3b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.2 bits (156), Expect = 6e-13
 Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 12/110 (10%)

Query: 13  WYFGMMTRQEAQAILLSEKDNGAFLVRDSNT-ILGNYVLCVKENNKVSHYIINKITNTEQ 71
           +  G ++++  +A +LS K  G FL+R S +   G       E +      I        
Sbjct: 9   YIMGFISKERERA-ILSTKPPGTFLLRFSESSKEGGVTFTWVEKDISGSTQIQ------S 61

Query: 72  QTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKP----ATKTIEKVIAKY 117
              Y            ++  YK+       +            E+   KY
Sbjct: 62  VEPYTKQQLNNMSFAEIIMGYKIMDATNILVSPLVYLYPDIPKEEAFGKY 111

>d1bg1a3 d.93.1.1 (A:576-716) STAT3b {Mouse (Mus musculus) [TaxId: 10090]} Length = 141

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT3b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.2 bits (156), Expect = 6e-13
 Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 12/110 (10%)

Query: 288 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNT-ILGNYVLCVKENNKVSHYIINKITNTEQ 346
           +  G ++++  +A +LS K  G FL+R S +   G       E +      I        
Sbjct: 9   YIMGFISKERERA-ILSTKPPGTFLLRFSESSKEGGVTFTWVEKDISGSTQIQ------S 61

Query: 347 QTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKP----ATKTIEKVIAKY 392
              Y            ++  YK+       +            E+   KY
Sbjct: 62  VEPYTKQQLNNMSFAEIIMGYKIMDATNILVSPLVYLYPDIPKEEAFGKY 111

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (147), Expect = 1e-12
 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 4/58 (6%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSK---DEEHWWTAQNISGEVGSIPVPYVQKY 166
            + A +D++  + D+LP K+ D + ++ +   DE  WW A+  + + G +P   +  Y
Sbjct: 6   VIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARL-NDKEGYVPRNLLGLY 62

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (147), Expect = 1e-12
 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 4/58 (6%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSK---DEEHWWTAQNISGEVGSIPVPYVQKY 441
            + A +D++  + D+LP K+ D + ++ +   DE  WW A+  + + G +P   +  Y
Sbjct: 6   VIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARL-NDKEGYVPRNLLGLY 62

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (95), Expect = 1e-05
 Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 3/50 (6%)

Query: 217 NAYDKTALKLEIGDIIKVTKT---NINGQWEGELNGKTGHFPFTHVEFIP 263
              +   L ++ GD + +      +    W   LN K G+ P   +   P
Sbjct: 14  EPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYP 63

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (95), Expect = 1e-05
 Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 3/50 (6%)

Query: 492 NAYDKTALKLEIGDIIKVTKT---NINGQWEGELNGKTGHFPFTHVEFIP 538
              +   L ++ GD + +      +    W   LN K G+ P   +   P
Sbjct: 14  EPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYP 63

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (148), Expect = 1e-12
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH---WWTAQNISGEVGSIPVPYVQKYS 167
           +   A Y F   +P++L    N  L ++   +      W    ++G+ G +P  Y++K  
Sbjct: 14  QVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTE 73

Query: 168 EGMS 171
            G S
Sbjct: 74  SGPS 77

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (148), Expect = 1e-12
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH---WWTAQNISGEVGSIPVPYVQKYS 442
           +   A Y F   +P++L    N  L ++   +      W    ++G+ G +P  Y++K  
Sbjct: 14  QVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTE 73

Query: 443 EGMS 446
            G S
Sbjct: 74  SGPS 77

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (90), Expect = 1e-04
 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 492 NAYDKTALKLEIGDIIKVTK----TNINGQWEGELNGKTGHFPFTHVEFIPTNETS 543
            A +   L +     +K+ +    T     W  E+NGK G+ P  ++    +  +S
Sbjct: 23  KARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTESGPSS 78

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (85), Expect = 6e-04
 Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 4/52 (7%)

Query: 217 NAYDKTALKLEIGDIIKVTK----TNINGQWEGELNGKTGHFPFTHVEFIPT 264
            A +   L +     +K+ +    T     W  E+NGK G+ P  ++    +
Sbjct: 23  KARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTES 74

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (148), Expect = 1e-12
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
           K  A   +     + L F K+DI+ V+ + E  W+   +  G  G  P  YV+    
Sbjct: 12  KAQALCSWTAKKDNHLNFSKHDIITVLEQQENWWFGEVH--GGRGWFPKSYVKIIPG 66

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (148), Expect = 1e-12
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 443
           K  A   +     + L F K+DI+ V+ + E  W+   +  G  G  P  YV+    
Sbjct: 12  KAQALCSWTAKKDNHLNFSKHDIITVLEQQENWWFGEVH--GGRGWFPKSYVKIIPG 66

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (124), Expect = 2e-09
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETMP 269
            A     L     DII V +      W GE++G  G FP ++V+ IP +E+ P
Sbjct: 20  TAKKDNHLNFSKHDIITVLEQQ-ENWWFGEVHGGRGWFPKSYVKIIPGSESGP 71

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (121), Expect = 6e-09
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 492 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS 543
            A     L     DII V +      W GE++G  G FP ++V+ IP +E+ 
Sbjct: 20  TAKKDNHLNFSKHDIITVLEQQ-ENWWFGEVHGGRGWFPKSYVKIIPGSESG 70

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 60.7 bits (147), Expect = 3e-12
 Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 10/72 (13%)

Query: 102 LIKPATKTIE-KVIAKYDFDGNDPDDLP-------FKKNDILIVVSKDEEHWWTAQNI-- 151
           L K  TK +   V     +     DD+P       F+  D L V  K    WW  + +  
Sbjct: 12  LEKAKTKPVAFAVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKE 71

Query: 152 SGEVGSIPVPYV 163
             E+G IP P  
Sbjct: 72  GCEIGFIPSPVK 83

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 60.7 bits (147), Expect = 3e-12
 Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 10/72 (13%)

Query: 377 LIKPATKTIE-KVIAKYDFDGNDPDDLP-------FKKNDILIVVSKDEEHWWTAQNI-- 426
           L K  TK +   V     +     DD+P       F+  D L V  K    WW  + +  
Sbjct: 12  LEKAKTKPVAFAVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKE 71

Query: 427 SGEVGSIPVPYV 438
             E+G IP P  
Sbjct: 72  GCEIGFIPSPVK 83

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.4 bits (144), Expect = 3e-12
 Identities = 12/52 (23%), Positives = 20/52 (38%)

Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
            +A YDF  +  + L   K + L V+  +    W         G +P  Y+ 
Sbjct: 3   FVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYIT 54

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.4 bits (144), Expect = 3e-12
 Identities = 12/52 (23%), Positives = 20/52 (38%)

Query: 388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
            +A YDF  +  + L   K + L V+  +    W         G +P  Y+ 
Sbjct: 3   FVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYIT 54

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.8 bits (88), Expect = 1e-04
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQW-EGELNGKTGHFPFTHVEFI 262
            A     L +  G+ ++V   N NG+W E +     G  P  ++  +
Sbjct: 10  VASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPV 56

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.8 bits (88), Expect = 1e-04
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 492 NAYDKTALKLEIGDIIKVTKTNINGQW-EGELNGKTGHFPFTHVEFI 537
            A     L +  G+ ++V   N NG+W E +     G  P  ++  +
Sbjct: 10  VASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPV 56

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.7 bits (142), Expect = 7e-12
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 6/61 (9%)

Query: 110 IEKVIAKYDFDGNDPD-DLPFKKNDILIVVSKD-----EEHWWTAQNISGEVGSIPVPYV 163
           +E   A YDF   +P+ ++  KK D++ ++SK      +  WW  +  +G +G IP  Y+
Sbjct: 5   LEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYI 64

Query: 164 Q 164
           +
Sbjct: 65  E 65

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.7 bits (142), Expect = 7e-12
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 6/61 (9%)

Query: 385 IEKVIAKYDFDGNDPD-DLPFKKNDILIVVSKD-----EEHWWTAQNISGEVGSIPVPYV 438
           +E   A YDF   +P+ ++  KK D++ ++SK      +  WW  +  +G +G IP  Y+
Sbjct: 5   LEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYI 64

Query: 439 Q 439
           +
Sbjct: 65  E 65

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.0 bits (83), Expect = 9e-04
 Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 6/49 (12%)

Query: 220 DKTALKLEIGDIIKVTK-----TNINGQWEGEL-NGKTGHFPFTHVEFI 262
            +  + L+ GD++ +          +  W+    NG  G+ P+ ++E I
Sbjct: 19  PEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII 67

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.0 bits (83), Expect = 9e-04
 Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 6/49 (12%)

Query: 495 DKTALKLEIGDIIKVTK-----TNINGQWEGEL-NGKTGHFPFTHVEFI 537
            +  + L+ GD++ +          +  W+    NG  G+ P+ ++E I
Sbjct: 19  PEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII 67

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.1 bits (145), Expect = 1e-11
 Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 10/103 (9%)

Query: 102 LIKPATKTIE-KVIAKYDFDGNDPDDLP-------FKKNDILIVVSKDEEHWWTAQNIS- 152
           L +   K +   V     + G   ++ P       F+  D L +  K    WW  + +  
Sbjct: 14  LERAKHKPVAFAVRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKE 73

Query: 153 -GEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTP 194
            G++  IP P   +          R     SS   +  +++ P
Sbjct: 74  GGDIAFIPSPQRLESIRLKQEQKARRSGNPSSLSDIGNRRSPP 116

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.1 bits (145), Expect = 1e-11
 Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 10/103 (9%)

Query: 377 LIKPATKTIE-KVIAKYDFDGNDPDDLP-------FKKNDILIVVSKDEEHWWTAQNIS- 427
           L +   K +   V     + G   ++ P       F+  D L +  K    WW  + +  
Sbjct: 14  LERAKHKPVAFAVRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKE 73

Query: 428 -GEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTP 469
            G++  IP P   +          R     SS   +  +++ P
Sbjct: 74  GGDIAFIPSPQRLESIRLKQEQKARRSGNPSSLSDIGNRRSPP 116

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 59

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.2 bits (138), Expect = 2e-11
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
           +   +KYDF   +  +L   K+D+L ++    + WW  +N SG+ G +P   +     
Sbjct: 2   KYAKSKYDFVARNSSELSVMKDDVLEILDDRRQ-WWKVRNASGDSGFVPNNILDIMRT 58

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 59

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.2 bits (138), Expect = 2e-11
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 443
           +   +KYDF   +  +L   K+D+L ++    + WW  +N SG+ G +P   +     
Sbjct: 2   KYAKSKYDFVARNSSELSVMKDDVLEILDDRRQ-WWKVRNASGDSGFVPNNILDIMRT 58

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 59

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.4 bits (84), Expect = 5e-04
 Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 12/63 (19%)

Query: 207 FARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEF 261
           +A+ K       YD  A     L +   D++++             +G +G  P   ++ 
Sbjct: 3   YAKSK-------YDFVARNSSELSVMKDDVLEILDDRRQWWKVRNASGDSGFVPNNILDI 55

Query: 262 IPT 264
           + T
Sbjct: 56  MRT 58

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 59

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.4 bits (84), Expect = 5e-04
 Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 12/63 (19%)

Query: 482 FARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEF 536
           +A+ K       YD  A     L +   D++++             +G +G  P   ++ 
Sbjct: 3   YAKSK-------YDFVARNSSELSVMKDDVLEILDDRRQWWKVRNASGDSGFVPNNILDI 55

Query: 537 IPT 539
           + T
Sbjct: 56  MRT 58

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (139), Expect = 2e-11
 Identities = 8/62 (12%), Positives = 21/62 (33%), Gaps = 4/62 (6%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQ----NISGEVGSIPVPYVQKY 166
           E       +  +  + L      +++++ K+   WW  +        + G  P  +V+  
Sbjct: 8   EIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLL 67

Query: 167 SE 168
             
Sbjct: 68  GP 69

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (139), Expect = 2e-11
 Identities = 8/62 (12%), Positives = 21/62 (33%), Gaps = 4/62 (6%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQ----NISGEVGSIPVPYVQKY 441
           E       +  +  + L      +++++ K+   WW  +        + G  P  +V+  
Sbjct: 8   EIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLL 67

Query: 442 SE 443
             
Sbjct: 68  GP 69

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (99), Expect = 6e-06
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 8/73 (10%)

Query: 486 KQVRVPNAYDKTA---LKLEIGDIIKVTKTNINGQWEGELN-----GKTGHFPFTHVEFI 537
           +  +V +AY  +    L L  G +I + K N +G W+GEL       + G FP +HV+ +
Sbjct: 8   EIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLL 67

Query: 538 PTNETSVETNGNG 550
             +        +G
Sbjct: 68  GPSSERASGPSSG 80

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (95), Expect = 2e-05
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 8/65 (12%)

Query: 211 KQVRVPNAYDKTA---LKLEIGDIIKVTKTNINGQWEGELN-----GKTGHFPFTHVEFI 262
           +  +V +AY  +    L L  G +I + K N +G W+GEL       + G FP +HV+ +
Sbjct: 8   EIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLL 67

Query: 263 PTNET 267
             +  
Sbjct: 68  GPSSE 72

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.2 bits (138), Expect = 3e-11
 Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 111 EKVIAKYDFD-GNDPDDLPFKKNDILIVVSKDEEH--WWTAQNISGEVGSIPVPYVQKYS 167
           +KV   +    GN+   L F + D+L ++  +E+    +   + +   G  P  Y +  S
Sbjct: 8   QKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLS 67

Query: 168 E 168
            
Sbjct: 68  G 68

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.2 bits (138), Expect = 3e-11
 Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 386 EKVIAKYDFD-GNDPDDLPFKKNDILIVVSKDEEH--WWTAQNISGEVGSIPVPYVQKYS 442
           +KV   +    GN+   L F + D+L ++  +E+    +   + +   G  P  Y +  S
Sbjct: 8   QKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLS 67

Query: 443 E 443
            
Sbjct: 68  G 68

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.1 bits (86), Expect = 3e-04
 Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 220 DKTALKLEIGDIIKVT-KTNINGQWEGELN--GKTGHFPFTHVEFIP 263
           +KT L    GD++ +      +G   GE +     G FP ++ + + 
Sbjct: 21  NKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLS 67

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.1 bits (86), Expect = 3e-04
 Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 495 DKTALKLEIGDIIKVT-KTNINGQWEGELN--GKTGHFPFTHVEFIP 538
           +KT L    GD++ +      +G   GE +     G FP ++ + + 
Sbjct: 21  NKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLS 67

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (136), Expect = 3e-11
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
           ++   A  D++     ++     D++ VV K E  WW  Q    + G IP  +++ 
Sbjct: 2   LQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMK-AKRGWIPASFLEP 56

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (136), Expect = 3e-11
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 440
           ++   A  D++     ++     D++ VV K E  WW  Q    + G IP  +++ 
Sbjct: 2   LQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMK-AKRGWIPASFLEP 56

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (88), Expect = 1e-04
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 212 QVRVPNAYDKTA---LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
             R    Y+KT+   + L  GD+++V + + +G W  ++  K G  P + +E +
Sbjct: 4   TYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPL 57

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (88), Expect = 1e-04
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 487 QVRVPNAYDKTA---LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 537
             R    Y+KT+   + L  GD+++V + + +G W  ++  K G  P + +E +
Sbjct: 4   TYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPL 57

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (136), Expect = 3e-11
 Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
           E  +A   +   + D++   + + + V+ K  + WW  +      G  P  Y+Q
Sbjct: 1   EPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIR-KDDVTGYFPSMYLQ 53

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (136), Expect = 3e-11
 Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 439
           E  +A   +   + D++   + + + V+ K  + WW  +      G  P  Y+Q
Sbjct: 1   EPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIR-KDDVTGYFPSMYLQ 53

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (86), Expect = 2e-04
 Identities = 10/44 (22%), Positives = 22/44 (50%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
            A +   + L  G+ ++V    ++G W    +  TG+FP  +++
Sbjct: 10  TAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ 53

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (86), Expect = 2e-04
 Identities = 10/44 (22%), Positives = 22/44 (50%)

Query: 492 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 535
            A +   + L  G+ ++V    ++G W    +  TG+FP  +++
Sbjct: 10  TAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ 53

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.6 bits (136), Expect = 8e-11
 Identities = 17/85 (20%), Positives = 28/85 (32%), Gaps = 1/85 (1%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH-WWTAQNISGEVGSIPVPYVQKYSEG 169
               A Y F+  + D++ F   DI+ V  K      W   +  G  G  P  YV+K    
Sbjct: 6   SGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSS 65

Query: 170 MSILSLRNLHLDSSSHHVPQQQTTP 194
            +  ++                + P
Sbjct: 66  ENEKAVSPKKALLPPTVSLSATSGP 90

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.6 bits (136), Expect = 8e-11
 Identities = 17/85 (20%), Positives = 28/85 (32%), Gaps = 1/85 (1%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH-WWTAQNISGEVGSIPVPYVQKYSEG 444
               A Y F+  + D++ F   DI+ V  K      W   +  G  G  P  YV+K    
Sbjct: 6   SGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSS 65

Query: 445 MSILSLRNLHLDSSSHHVPQQQTTP 469
            +  ++                + P
Sbjct: 66  ENEKAVSPKKALLPPTVSLSATSGP 90

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (110), Expect = 3e-07
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 217 NAYDKTALKLEIGDIIKVTK--TNINGQWEGELNGKTGHFPFTHVEFIPTNETMPFHSSM 274
            A +   +    GDII+V +      G   G   G  G FP  +VE +P++E     S  
Sbjct: 15  EARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSSENEKAVSPK 74

Query: 275 K 275
           K
Sbjct: 75  K 75

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (105), Expect = 1e-06
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 492 NAYDKTALKLEIGDIIKVTK--TNINGQWEGELNGKTGHFPFTHVEFIPTNETS 543
            A +   +    GDII+V +      G   G   G  G FP  +VE +P++E  
Sbjct: 15  EARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSSENE 68

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.1 bits (135), Expect = 8e-11
 Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 14/81 (17%)

Query: 99  TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD-----EEHWWT------ 147
           T+  +      + KV A++D+   D D+L  K  D+++V+        +E W        
Sbjct: 1   TTGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESD 60

Query: 148 ---AQNISGEVGSIPVPYVQK 165
               + +    G  P  + ++
Sbjct: 61  WNQHKELEKCRGVFPENFTER 81

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.1 bits (135), Expect = 8e-11
 Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 14/81 (17%)

Query: 374 TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD-----EEHWWT------ 422
           T+  +      + KV A++D+   D D+L  K  D+++V+        +E W        
Sbjct: 1   TTGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESD 60

Query: 423 ---AQNISGEVGSIPVPYVQK 440
               + +    G  P  + ++
Sbjct: 61  WNQHKELEKCRGVFPENFTER 81

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.4 bits (130), Expect = 3e-10
 Identities = 6/66 (9%), Positives = 24/66 (36%), Gaps = 5/66 (7%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-----SGEVGSIPVPYVQK 165
             +    D+     +++   + +++ V++ ++++                G +P   +  
Sbjct: 8   STMTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSILAP 67

Query: 166 YSEGMS 171
           +S   S
Sbjct: 68  FSGPSS 73

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.4 bits (130), Expect = 3e-10
 Identities = 6/66 (9%), Positives = 24/66 (36%), Gaps = 5/66 (7%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-----SGEVGSIPVPYVQK 440
             +    D+     +++   + +++ V++ ++++                G +P   +  
Sbjct: 8   STMTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSILAP 67

Query: 441 YSEGMS 446
           +S   S
Sbjct: 68  FSGPSS 73

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.1 bits (132), Expect = 3e-10
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 10/66 (15%)

Query: 113 VIAKYDFDGNDPD-----DLPFKKNDILIVVSKDEEHWWTAQNI-----SGEVGSIPVPY 162
           + A +D+D           L F+  D+L V+   +E WW A+ +     + ++G IP   
Sbjct: 4   IRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKR 63

Query: 163 VQKYSE 168
             +  E
Sbjct: 64  RVERRE 69

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.1 bits (132), Expect = 3e-10
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 10/66 (15%)

Query: 388 VIAKYDFDGNDPD-----DLPFKKNDILIVVSKDEEHWWTAQNI-----SGEVGSIPVPY 437
           + A +D+D           L F+  D+L V+   +E WW A+ +     + ++G IP   
Sbjct: 4   IRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKR 63

Query: 438 VQKYSE 443
             +  E
Sbjct: 64  RVERRE 69

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (126), Expect = 2e-09
 Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 7/72 (9%)

Query: 104 KPATKTIEKVIAKYDFD------GNDPDDLPFKKNDILIVVSK-DEEHWWTAQNISGEVG 156
           +  +  +   +A+Y ++       N   +LP      L V    DE+ ++  + + G+ G
Sbjct: 11  QRYSGKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRG 70

Query: 157 SIPVPYVQKYSE 168
            +P  +V    +
Sbjct: 71  LVPSNFVDFVQD 82

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (126), Expect = 2e-09
 Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 7/72 (9%)

Query: 379 KPATKTIEKVIAKYDFD------GNDPDDLPFKKNDILIVVSK-DEEHWWTAQNISGEVG 431
           +  +  +   +A+Y ++       N   +LP      L V    DE+ ++  + + G+ G
Sbjct: 11  QRYSGKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRG 70

Query: 432 SIPVPYVQKYSE 443
            +P  +V    +
Sbjct: 71  LVPSNFVDFVQD 82

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (94), Expect = 4e-05
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 491 PNAYDKTALKLEIGDII-KVTKTNINGQWEGEL-NGKTGHFPFTHVEFIPTNETSVET 546
           PN   +  L L  G  +      + +G +EGEL +G+ G  P   V+F+  NE+ + +
Sbjct: 32  PNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFVQDNESRLAS 89

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (91), Expect = 1e-04
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 216 PNAYDKTALKLEIGDII-KVTKTNINGQWEGEL-NGKTGHFPFTHVEFIPTNET 267
           PN   +  L L  G  +      + +G +EGEL +G+ G  P   V+F+  NE+
Sbjct: 32  PNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFVQDNES 85

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.8 bits (124), Expect = 2e-09
 Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE-EHWWTAQNI-SGEVGSIPVPY 162
           P  +  ++        G     L     DI+ +   +   +WW  +N  + EVG  P   
Sbjct: 5   PKMEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNR 64

Query: 163 VQKY 166
           V  Y
Sbjct: 65  VHPY 68

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.8 bits (124), Expect = 2e-09
 Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 380 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE-EHWWTAQNI-SGEVGSIPVPY 437
           P  +  ++        G     L     DI+ +   +   +WW  +N  + EVG  P   
Sbjct: 5   PKMEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNR 64

Query: 438 VQKY 441
           V  Y
Sbjct: 65  VHPY 68

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.0 bits (96), Expect = 1e-05
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 3/48 (6%)

Query: 216 PNAYDKTALKLEIGDIIKVTKTNINGQW-EGEL--NGKTGHFPFTHVE 260
           P       L+L  GDI+++TK      W EG      + G FP   V 
Sbjct: 19  PPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 66

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.0 bits (96), Expect = 1e-05
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 3/48 (6%)

Query: 491 PNAYDKTALKLEIGDIIKVTKTNINGQW-EGEL--NGKTGHFPFTHVE 535
           P       L+L  GDI+++TK      W EG      + G FP   V 
Sbjct: 19  PPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 66

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.7 bits (121), Expect = 3e-09
 Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEE--HWWTAQNISGEVGSIPVPYVQ 164
             Y +   D D++     D + +V++D          + +GE G +P  Y++
Sbjct: 4   VLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR 55

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.7 bits (121), Expect = 3e-09
 Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 390 AKYDFDGNDPDDLPFKKNDILIVVSKDEE--HWWTAQNISGEVGSIPVPYVQ 439
             Y +   D D++     D + +V++D          + +GE G +P  Y++
Sbjct: 4   VLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR 55

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (119), Expect = 2e-08
 Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 10/70 (14%)

Query: 109 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE---EHWWTAQ-------NISGEVGSI 158
            I   +A  D+   D   L   +  ++ V SK +     +W          +++  +G  
Sbjct: 20  PISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYF 79

Query: 159 PVPYVQKYSE 168
           P   V++   
Sbjct: 80  PSSIVREDQT 89

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (119), Expect = 2e-08
 Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 10/70 (14%)

Query: 384 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE---EHWWTAQ-------NISGEVGSI 433
            I   +A  D+   D   L   +  ++ V SK +     +W          +++  +G  
Sbjct: 20  PISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYF 79

Query: 434 PVPYVQKYSE 443
           P   V++   
Sbjct: 80  PSSIVREDQT 89

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (117), Expect = 2e-08
 Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 16/74 (21%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSK---------------DEEHWWTAQN-ISGE 154
            +  A YD+     +D+     DIL V                  +E  W    N  +GE
Sbjct: 4   YQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGE 63

Query: 155 VGSIPVPYVQKYSE 168
            G  P  YV+    
Sbjct: 64  RGDFPGTYVEYIGR 77

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (117), Expect = 2e-08
 Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 16/74 (21%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSK---------------DEEHWWTAQN-ISGE 429
            +  A YD+     +D+     DIL V                  +E  W    N  +GE
Sbjct: 4   YQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGE 63

Query: 430 VGSIPVPYVQKYSE 443
            G  P  YV+    
Sbjct: 64  RGDFPGTYVEYIGR 77

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (80), Expect = 0.002
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 17/70 (24%)

Query: 217 NAYDKTALKLEIGDIIKVTKTNI---------------NGQWEG--ELNGKTGHFPFTHV 259
               +  + L +GDI+ V K ++                G   G  E  G+ G FP T+V
Sbjct: 13  KKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYV 72

Query: 260 EFIPTNETMP 269
           E+I   +  P
Sbjct: 73  EYIGRKKISP 82

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (80), Expect = 0.002
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 17/70 (24%)

Query: 492 NAYDKTALKLEIGDIIKVTKTNI---------------NGQWEG--ELNGKTGHFPFTHV 534
               +  + L +GDI+ V K ++                G   G  E  G+ G FP T+V
Sbjct: 13  KKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYV 72

Query: 535 EFIPTNETSV 544
           E+I   + S 
Sbjct: 73  EYIGRKKISP 82

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (110), Expect = 3e-07
 Identities = 9/64 (14%), Positives = 25/64 (39%), Gaps = 3/64 (4%)

Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE---EHWWTAQNISGEVGSIPVPYVQKYS 167
           +   A+ +F+     D+   + D++ V+ K +          +     G +   +++ Y+
Sbjct: 18  KLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYN 77

Query: 168 EGMS 171
              S
Sbjct: 78  PRRS 81

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (110), Expect = 3e-07
 Identities = 9/64 (14%), Positives = 25/64 (39%), Gaps = 3/64 (4%)

Query: 386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE---EHWWTAQNISGEVGSIPVPYVQKYS 442
           +   A+ +F+     D+   + D++ V+ K +          +     G +   +++ Y+
Sbjct: 18  KLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYN 77

Query: 443 EGMS 446
              S
Sbjct: 78  PRRS 81

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	563
d1rjaa_	100	Tyrosine-protein kinase 6 (Breast tumor kinase, Br	99.91
d2fcia1	105	Phospholipase C-gamma-1 {Cow (Bos taurus) [TaxId:	99.91
d1nrva_	105	Growth factor receptor-bound protein 10, GRB10 {Hu	99.91
d1opka2	101	Abl tyrosine kinase {Mouse (Mus musculus) [TaxId:	99.9
d2oq1a1	130	Tyrosine-protein kinase zap-70 {Human (Homo sapien	99.9
d1jwoa_	97	Csk homologous kinase Chk {Human (Homo sapiens) [T	99.9
d1mila_	104	Shc adaptor protein {Human (Homo sapiens) [TaxId:	99.9
d1d4ta_	104	The Xlp protein Sap {Human (Homo sapiens) [TaxId:	99.9
d1jyra_	96	Growth factor receptor-bound protein 2 (GRB2) {Hum	99.89
d2qmsa1	113	Growth factor receptor-bound protein 7 {Human (Hom	99.89
d1i3za_	103	Ews/fli1 activated transcript 2, Eat2 {Mouse (Mus	99.89
d1k9aa2	101	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.89
d2oq1a2	124	Tyrosine-protein kinase zap-70 {Human (Homo sapien	99.89
d1a81a1	129	Syk tyrosine kinase {Human (Homo sapiens) [TaxId:	99.89
d1lkka_	105	p56-lck tyrosine kinase {Human (Homo sapiens) [Tax	99.89
d2shpa2	109	Tyrosine phoshatase shp-2 {Human (Homo sapiens) [T	99.89
d1a81a2	125	Syk tyrosine kinase {Human (Homo sapiens) [TaxId:	99.89
d1o48a_	106	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.88
d1g83a2	104	Tyrosine kinase Fyn {Human (Homo sapiens) [TaxId:	99.88
d1blja_	114	P55 Blk protein tyrosine kinase {Mouse (Mus muscul	99.88
d1r1qa_	97	GRB2-related adaptor protein 2 (MONA, GRID) {Mouse	99.88
d1luia_	108	Itk/tsk protein tyrosine kinase {Mouse (Mus muscul	99.88
d1qcfa2	103	Hemopoetic cell kinase Hck {Human (Homo sapiens) [	99.88
d2eyva1	109	Crk proto-oncogen {Human (Homo sapiens) [TaxId: 96	99.87
d2izva2	112	Suppressor of cytokine signaling 4, SOCS-4 {Human	99.85
d2cs0a1	106	Hematopoietic SH2 domain containing protein HSH2D	99.85
d1qada_	107	Phosphatidylinositol 3-kinase, p85-alpha subunit {	99.85
d1rpya_	86	Adaptor protein Aps {Rat (Rattus norvegicus) [TaxI	99.85
d2c9wa2	103	Suppressor of cytokine signaling 2, SOCS-2 {Human	99.83
d2shpa3	108	Tyrosine phoshatase shp-2 {Human (Homo sapiens) [T	99.82
d1fu6a_	111	Phosphatidylinositol 3-kinase, p85-alpha subunit {	99.82
d1udla_	98	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.77
d1rjaa_	100	Tyrosine-protein kinase 6 (Breast tumor kinase, Br	99.73
d2fcia1	105	Phospholipase C-gamma-1 {Cow (Bos taurus) [TaxId:	99.72
d1xa6a2	141	Beta-chimaerin, N-terminal domain {Human (Homo sap	99.72
d1nrva_	105	Growth factor receptor-bound protein 10, GRB10 {Hu	99.71
d1jwoa_	97	Csk homologous kinase Chk {Human (Homo sapiens) [T	99.7
d1jyra_	96	Growth factor receptor-bound protein 2 (GRB2) {Hum	99.7
d2oq1a1	130	Tyrosine-protein kinase zap-70 {Human (Homo sapien	99.7
d1k9aa2	101	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.68
d1a81a1	129	Syk tyrosine kinase {Human (Homo sapiens) [TaxId:	99.67
d1i3za_	103	Ews/fli1 activated transcript 2, Eat2 {Mouse (Mus	99.67
d2qmsa1	113	Growth factor receptor-bound protein 7 {Human (Hom	99.67
d1opka2	101	Abl tyrosine kinase {Mouse (Mus musculus) [TaxId:	99.67
d2shpa2	109	Tyrosine phoshatase shp-2 {Human (Homo sapiens) [T	99.67
d1lkka_	105	p56-lck tyrosine kinase {Human (Homo sapiens) [Tax	99.66
d1d4ta_	104	The Xlp protein Sap {Human (Homo sapiens) [TaxId:	99.66
d2oq1a2	124	Tyrosine-protein kinase zap-70 {Human (Homo sapien	99.66
d1a81a2	125	Syk tyrosine kinase {Human (Homo sapiens) [TaxId:	99.65
d1qcfa2	103	Hemopoetic cell kinase Hck {Human (Homo sapiens) [	99.65
d1r1qa_	97	GRB2-related adaptor protein 2 (MONA, GRID) {Mouse	99.64
d1blja_	114	P55 Blk protein tyrosine kinase {Mouse (Mus muscul	99.64
d1udla_	98	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.64
d2eyva1	109	Crk proto-oncogen {Human (Homo sapiens) [TaxId: 96	99.63
d1o48a_	106	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.63
d1luia_	108	Itk/tsk protein tyrosine kinase {Mouse (Mus muscul	99.63
d1mila_	104	Shc adaptor protein {Human (Homo sapiens) [TaxId:	99.62
d1utia_	57	Grb2-related adaptor protein 2 (Mona/Gads) {Mouse	99.62
d1g83a2	104	Tyrosine kinase Fyn {Human (Homo sapiens) [TaxId:	99.62
d1utia_	57	Grb2-related adaptor protein 2 (Mona/Gads) {Mouse	99.61
d1gcqa_	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.61
d1sema_	58	Growth factor receptor-bound protein 2 (GRB2), N-	99.6
d1gcqa_	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.6
d1sema_	58	Growth factor receptor-bound protein 2 (GRB2), N-	99.59
d1wlpb1	53	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.59
d1ckaa_	57	C-Crk, N-terminal SH3 domain {Mouse (Mus musculus)	99.59
d1u06a1	55	alpha-Spectrin, SH3 domain {Chicken (Gallus gallus	99.59
d1k4us_	62	p67phox {Human (Homo sapiens) [TaxId: 9606]}	99.58
d1u06a1	55	alpha-Spectrin, SH3 domain {Chicken (Gallus gallus	99.57
d2cs0a1	106	Hematopoietic SH2 domain containing protein HSH2D	99.57
d1wlpb1	53	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.57
d2rn8a1	53	Bruton's tyrosine kinase {Mus musculus [TaxId: 100	99.57
d1ng2a1	58	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.56
d1qada_	107	Phosphatidylinositol 3-kinase, p85-alpha subunit {	99.56
d1ujya_	76	Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606	99.56
d1uj0a_	58	Signal transducing adaptor molecule Stam2 {Mouse (	99.55
d2izva2	112	Suppressor of cytokine signaling 4, SOCS-4 {Human	99.55
d1uj0a_	58	Signal transducing adaptor molecule Stam2 {Mouse (	99.55
d1jo8a_	58	Actin binding protein ABP1 {Baker's yeast (Sacchar	99.55
d2shpa3	108	Tyrosine phoshatase shp-2 {Human (Homo sapiens) [T	99.55
d1oota_	58	Hypothetical protein YFR024c {Baker's yeast (Sacch	99.54
d1k4us_	62	p67phox {Human (Homo sapiens) [TaxId: 9606]}	99.54
d1ue9a_	80	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.54
d1jo8a_	58	Actin binding protein ABP1 {Baker's yeast (Sacchar	99.54
d2v1ra1	67	Peroxisomal membrane protein Pex13p {Baker's yeast	99.54
d1j3ta_	74	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.53
d1gl5a_	67	tyrosine kinase tec {Mouse (Mus musculus) [TaxId:	99.53
d1ng2a1	58	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.53
d1rpya_	86	Adaptor protein Aps {Rat (Rattus norvegicus) [TaxI	99.52
d2rn8a1	53	Bruton's tyrosine kinase {Mus musculus [TaxId: 100	99.52
d1ckaa_	57	C-Crk, N-terminal SH3 domain {Mouse (Mus musculus)	99.52
d1i07a_	59	EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 1009	99.52
d1ue9a_	80	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.52
d1arka_	60	SH3 domain from nebulin {Human (Homo sapiens) [Tax	99.51
d1oota_	58	Hypothetical protein YFR024c {Baker's yeast (Sacch	99.5
d1efna_	57	Fyn proto-oncogene tyrosine kinase, SH3 domain {Hu	99.5
d2c9wa2	103	Suppressor of cytokine signaling 2, SOCS-2 {Human	99.5
d1j3ta_	74	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.5
d1awwa_	67	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	99.49
d1uffa_	93	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.49
d1u5sa1	71	Nck-2 {Human (Homo sapiens) [TaxId: 9606]}	99.49
d1arka_	60	SH3 domain from nebulin {Human (Homo sapiens) [Tax	99.48
d1ugva_	72	Olygophrenin-1 like protein (KIAA0621) {Human (Hom	99.48
d1fmka1	64	c-src protein tyrosine kinase {Human (Homo sapiens	99.48
d1k9aa1	71	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.47
d1ng2a2	118	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.47
d1ujya_	76	Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606	99.47
d1gl5a_	67	tyrosine kinase tec {Mouse (Mus musculus) [TaxId:	99.47
d1gria1	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.47
d1ycsb2	63	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.47
d1opka1	57	Abl tyrosine kinase, SH3 domain {Mouse (Mus muscul	99.46
d1uhfa_	69	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.46
d1wfwa_	74	Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}	99.46
d1awwa_	67	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	99.46
d2v1ra1	67	Peroxisomal membrane protein Pex13p {Baker's yeast	99.46
d1i07a_	59	EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 1009	99.45
d1fu6a_	111	Phosphatidylinositol 3-kinase, p85-alpha subunit {	99.45
d1ug1a_	92	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.45
d1ug1a_	92	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.45
d2hspa_	71	Phospholipase C, SH3 domain {Human (Homo sapiens)	99.44
d1spka_	72	BAI1-associated protein 2-like 1 (RIKEN cDNA 13000	99.44
d1ycsb2	63	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.44
d1ng2a2	118	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.44
d1uhca_	79	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.44
d1uhfa_	69	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.44
d1uhca_	79	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.44
d1ugva_	72	Olygophrenin-1 like protein (KIAA0621) {Human (Hom	99.44
d1uffa_	93	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.43
d1efna_	57	Fyn proto-oncogene tyrosine kinase, SH3 domain {Hu	99.43
d1gria1	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.42
d1spka_	72	BAI1-associated protein 2-like 1 (RIKEN cDNA 13000	99.42
d1u5sa1	71	Nck-2 {Human (Homo sapiens) [TaxId: 9606]}	99.42
d1phta_	83	Phosphatidylinositol 3-kinase (p85-alpha subunit,	99.42
d2hspa_	71	Phospholipase C, SH3 domain {Human (Homo sapiens)	99.41
d1fmka1	64	c-src protein tyrosine kinase {Human (Homo sapiens	99.41
d1wiea_	96	RIM binding protein 2, RIMBP2 {Human (Homo sapiens	99.4
d1opka1	57	Abl tyrosine kinase, SH3 domain {Mouse (Mus muscul	99.4
d1phta_	83	Phosphatidylinositol 3-kinase (p85-alpha subunit,	99.4
d1wiea_	96	RIM binding protein 2, RIMBP2 {Human (Homo sapiens	99.39
d1k9aa1	71	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.39
d1gcqc_	69	Vav N-terminal SH3 domain {Mouse (Mus musculus) [T	99.38
d2iima1	62	p56-lck tyrosine kinase, SH3 domain {Human (Homo s	99.38
d1zuua1	56	BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.38
d1bb9a_	83	Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 101	99.37
d1gcqc_	69	Vav N-terminal SH3 domain {Mouse (Mus musculus) [T	99.37
d1uura3	131	STAT homologue {Dictyostelium discoideum [TaxId: 4	99.37
d1qcfa1	65	Hemapoetic cell kinase Hck {Human (Homo sapiens) [	99.37
d1wfwa_	74	Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}	99.36
d1xa6a2	141	Beta-chimaerin, N-terminal domain {Human (Homo sap	99.36
d1zuua1	56	BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.36
d1bg1a3	141	STAT3b {Mouse (Mus musculus) [TaxId: 10090]}	99.34
d1bb9a_	83	Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 101	99.34
d2iima1	62	p56-lck tyrosine kinase, SH3 domain {Human (Homo s	99.3
d1i1ja_	106	Melanoma inhibitory activity protein {Human (Homo	99.29
d1qcfa1	65	Hemapoetic cell kinase Hck {Human (Homo sapiens) [	99.28
d1i1ja_	106	Melanoma inhibitory activity protein {Human (Homo	99.25
d1t0ha_	96	SH3-like domain of the L-type calcium channel {Rab	99.25
d1kjwa1	96	Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.24
d1t0ha_	96	SH3-like domain of the L-type calcium channel {Rab	99.19
d1kjwa1	96	Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.18
d1vyva1	145	SH3-like domain of the L-type calcium channel {Rat	98.99
d1vyva1	145	SH3-like domain of the L-type calcium channel {Rat	98.94
d1vyua1	136	SH3-like domain of the L-type calcium channel {Rat	98.77
d1bg1a3	141	STAT3b {Mouse (Mus musculus) [TaxId: 10090]}	98.65
d1vyua1	136	SH3-like domain of the L-type calcium channel {Rat	98.65
d1uura3	131	STAT homologue {Dictyostelium discoideum [TaxId: 4	98.65
d1bf5a3	142	STAT-1 {Human (Homo sapiens) [TaxId: 9606]}	97.59
d1ri9a_	77	Fyn-binding protein (T-cell adapter protein adap)	96.28
d1ri9a_	77	Fyn-binding protein (T-cell adapter protein adap)	95.81
d1bf5a3	142	STAT-1 {Human (Homo sapiens) [TaxId: 9606]}	93.34
d3buxb3	88	Cbl {Human (Homo sapiens) [TaxId: 9606]}	84.95

>d1rjaa_ d.93.1.1 (A:) Tyrosine-protein kinase 6 (Breast tumor kinase, Brk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase 6 (Breast tumor kinase, Brk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=6.5e-25  Score=178.82  Aligned_cols=95  Identities=32%  Similarity=0.562  Sum_probs=83.9

Q ss_pred             CCCccccCCCHHHHHHHHcCC-CCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEe-CCceecChHh
Q psy10852         10 RNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKI-GDKTFSDLPS   87 (563)
Q Consensus        10 ~~~w~~g~i~r~~ae~~L~~~-~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~-~~~~F~sl~~   87 (563)
                      +++||||.|+|++||++|+.. ..+|+||||+|++.+|.|+|||+.+++|+||+|.+..++    +|.+ ++..|+||.+
T Consensus         1 sepWy~g~isR~~Ae~~L~~~~~~~G~FLvR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g----~~~l~~~~~F~sl~~   76 (100)
T d1rjaa_           1 SEPWFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGG----RLHLNEAVSFLSLPE   76 (100)
T ss_dssp             CCCCBCTTCCHHHHHHHHSSTTCSSCCEEEEECSSSSSCEEEEECTTSSCEEEEEEECSSS----CEEEETTEEESSHHH
T ss_pred             CCCCcCCCCCHHHHHHHHhccCCCCCeEEeecCCCCCCCEEEEEEcCCCceEEEEEECCCC----CEEecCCCccCCHHH
Confidence            579999999999999999863 467999999999989999999999999999999987654    3666 5689999999


Q ss_pred             hHHhhhcccCC-Cccccccccc
Q psy10852         88 LLAFYKVHYLD-TSPLIKPATK  108 (563)
Q Consensus        88 Li~~y~~~~~~-~~~L~~p~~~  108 (563)
                      ||+||+.++++ .+.|+.||++
T Consensus        77 LV~~y~~~~~~~~~~L~~Pc~~   98 (100)
T d1rjaa_          77 LVNYHRAQSLSHGLRLAAPCRK   98 (100)
T ss_dssp             HHHHHHHCCTTSSSCCCSBCCC
T ss_pred             HHHHHhhCCCCCccCcCeecCC
Confidence            99999999886 6788999986

>d2fcia1 d.93.1.1 (A:1-105) Phospholipase C-gamma-1 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phospholipase C-gamma-1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=4e-25  Score=181.17  Aligned_cols=99  Identities=26%  Similarity=0.528  Sum_probs=87.8

Q ss_pred             CCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeCCceec
Q psy10852          4 TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFS   83 (563)
Q Consensus         4 ~~~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~   83 (563)
                      +...|++++||||.|+|++||++|.+.+.+|+||||+|+. +|.|+|||+.+++|+||+|.+.+.     .|.+++..|.
T Consensus         2 sp~~he~~~Wy~g~i~R~eAe~lL~~~~~~G~FLVR~S~~-~~~yvLSv~~~~~v~H~~I~~~~~-----~~~~~~~~F~   75 (105)
T d2fcia1           2 SPGIHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNE-PNSYAISFRAEGKIKHCRVQQEGQ-----TVMLGNSEFD   75 (105)
T ss_dssp             CSCTTSSSCCCCSSSCSHHHHHHHHHSSSSCCEEEEECSS-TTCEEEEEEETTEECCCEEBCCSS-----CEECSSSEES
T ss_pred             CCcccccCCCccCCCCHHHHHHHHHhCCCCCeEEEEecCC-CCCEEEEEEeccccEEEEEEecCC-----eEecCCcccC
Confidence            5678999999999999999999998766579999999965 899999999999999999986432     2888889999


Q ss_pred             ChHhhHHhhhcccCC-Cccccccccc
Q psy10852         84 DLPSLLAFYKVHYLD-TSPLIKPATK  108 (563)
Q Consensus        84 sl~~Li~~y~~~~~~-~~~L~~p~~~  108 (563)
                      ||.+||+||+.+++. .+.|+.||++
T Consensus        76 sl~~LV~~y~~~~~~~~~~L~~P~~~  101 (105)
T d2fcia1          76 SLVDLISYYEKHPLYRKMKLRYPINE  101 (105)
T ss_dssp             TTHHHHHHHHHSCCSTTCSSCCCCCC
T ss_pred             CHHHHHHHHhhCCCCCccCCCCCCCC
Confidence            999999999999886 6788999886

>d1nrva_ d.93.1.1 (A:) Growth factor receptor-bound protein 10, GRB10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 10, GRB10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1e-24  Score=179.73  Aligned_cols=100  Identities=27%  Similarity=0.497  Sum_probs=83.3

Q ss_pred             CCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeCC--ceecC
Q psy10852          8 HDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD--KTFSD   84 (563)
Q Consensus         8 ~~~~~w~~g~i~r~~ae~~L~~-~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~--~~F~s   84 (563)
                      |++++||||.|+|++||++|.. ..+||+||||+|++.+|.|+|||+.+++|+||+|....++ +...|.+.+  ..|+|
T Consensus         2 h~~~~Wyhg~isR~~Ae~lL~~~g~~dG~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~-~~~~~~~~~~~~~F~s   80 (105)
T d1nrva_           2 HRTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEDD-GQTFFSLDDGNTKFSD   80 (105)
T ss_dssp             CTTSTTBCTTCCHHHHHHHHHHTTCCTTEEEEEECSSCTTCEEEEEEETTEEEEEEEEEC------CCEESSTTSSCBSS
T ss_pred             CccCcccCCCCCHHHHHHHHhhcCCCCceEEEEeCCCCCCCEEEEEEECCceeEEEEEEecCC-CeEEEEECCCCcccCC
Confidence            6889999999999999999976 3567999999999989999999999999999999987643 222367753  68999


Q ss_pred             hHhhHHhhhcccCC-Cccccccccc
Q psy10852         85 LPSLLAFYKVHYLD-TSPLIKPATK  108 (563)
Q Consensus        85 l~~Li~~y~~~~~~-~~~L~~p~~~  108 (563)
                      |.+||+||+.++.+ .+.|+.||++
T Consensus        81 l~~LV~~y~~~~~~L~~~L~~Pc~r  105 (105)
T d1nrva_          81 LIQLVDFYQLNKGVLPCKLKHHCIR  105 (105)
T ss_dssp             HHHHHHHHTTCCTTSSSCCCEECCC
T ss_pred             HHHHHHHhccCcCCCCccCCcCCCC
Confidence            99999999998765 6788888874

>d1opka2 d.93.1.1 (A:140-240) Abl tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Abl tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=2.2e-24  Score=176.31  Aligned_cols=96  Identities=29%  Similarity=0.485  Sum_probs=84.6

Q ss_pred             CCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeC-CceecChH
Q psy10852          8 HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDLP   86 (563)
Q Consensus         8 ~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~sl~   86 (563)
                      ++.++||||.|+|++||++|++.. +|+||||+|++.+|.|+|||+.+++|+||+|.+..++    .|.+. +..|+||.
T Consensus         2 Le~~~Wy~g~isR~eAe~lL~~~~-~G~FLVR~S~~~~~~~~LSv~~~~~v~H~~I~~~~~g----~~~~~~~~~F~sl~   76 (101)
T d1opka2           2 LEKHSWYHGPVSRNAAEYLLSSGI-NGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDG----KLYVSSESRFNTLA   76 (101)
T ss_dssp             GGGSTTEEEECCHHHHHHHGGGCC-TTEEEEEECSSSTTCEEEEEEETTEEEEEECEECTTS----CEESSTTSCBSSHH
T ss_pred             cccCcccCCCCCHHHHHHHhcCCC-CCeEEEEecCCCCCCEEEEEEcCcceEEEEeEECCCC----CEEeCCCcccCCHH
Confidence            677899999999999999998754 5999999999889999999999999999999987655    36665 57899999


Q ss_pred             hhHHhhhcccCC-Cccccccccc
Q psy10852         87 SLLAFYKVHYLD-TSPLIKPATK  108 (563)
Q Consensus        87 ~Li~~y~~~~~~-~~~L~~p~~~  108 (563)
                      +||+||+.++.+ .+.|+.||++
T Consensus        77 ~LI~~y~~~~~~l~~~L~~P~pr   99 (101)
T d1opka2          77 ELVHHHSTVADGLITTLHYPAPK   99 (101)
T ss_dssp             HHHHHHTTCCTTSSSCCCEECCC
T ss_pred             HHHHHHhhCCCCCceECCCccCC
Confidence            999999998875 5678899876

>d2oq1a1 d.93.1.1 (A:5-134) Tyrosine-protein kinase zap-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase zap-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=5.8e-24  Score=180.90  Aligned_cols=99  Identities=28%  Similarity=0.484  Sum_probs=87.3

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeC-Cceec
Q psy10852          6 DPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFS   83 (563)
Q Consensus         6 ~~~~~~~w~~g~i~r~~ae~~L~~-~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~   83 (563)
                      |+...++||||.|+|++||++|+. ...+|+||||+|++.+|.|+|||+.+++|+||+|.+..++    .|.+. +..|+
T Consensus         1 d~~~~~pWy~g~i~R~~Ae~~L~~~g~~~G~FLVR~S~~~~g~yvLSv~~~~~v~H~~I~~~~~g----~~~l~~~~~F~   76 (130)
T d2oq1a1           1 DPAAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNG----TYAIAGGKAHC   76 (130)
T ss_dssp             CTTTTCTTBCBSCCHHHHHHHHHHTTCCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTS----CEEETTSCCBS
T ss_pred             CCccCCCCccCCCCHHHHHHHHHhcCCCCceEEEEecCCCCccEEEEEeeCCceEEEEEEEcCCC----ceeccCCCCcC
Confidence            577888999999999999999986 3567999999999989999999999999999999987654    37785 47899


Q ss_pred             ChHhhHHhhhcccCC-Cccccccccc
Q psy10852         84 DLPSLLAFYKVHYLD-TSPLIKPATK  108 (563)
Q Consensus        84 sl~~Li~~y~~~~~~-~~~L~~p~~~  108 (563)
                      ||.+||+||+.++.+ .+.|+.||++
T Consensus        77 sl~~Lv~~Y~~~~~gL~~~L~~P~~r  102 (130)
T d2oq1a1          77 GPAELCEFYSRDPDGLPCNLRKPCNR  102 (130)
T ss_dssp             SHHHHHHHHHHCCTTSSSCCCSBCCC
T ss_pred             CHHHHHHHHhhCCCCCCccCCccCCC
Confidence            999999999998865 5788999987

>d1jwoa_ d.93.1.1 (A:) Csk homologous kinase Chk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Csk homologous kinase Chk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.6e-24  Score=173.29  Aligned_cols=94  Identities=30%  Similarity=0.504  Sum_probs=81.3

Q ss_pred             CCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEe-CCceecChHh
Q psy10852          9 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKI-GDKTFSDLPS   87 (563)
Q Consensus         9 ~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~-~~~~F~sl~~   87 (563)
                      ...|||||.|+|++||++|++.. +|+||||+|++.+|.|+|||+.+++|+||+|.+.+++     |.+ ++..|+||.+
T Consensus         2 s~~PWy~g~isR~eAe~~L~~~~-~G~FLVR~S~~~~g~~vLSv~~~~~v~H~~I~~~~~~-----~~~~~~~~F~sl~~   75 (97)
T d1jwoa_           2 SLMPWFHGKISGQEAVQQLQPPE-DGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGH-----LTIDEAVFFCNLMD   75 (97)
T ss_dssp             TTCTTEEESCCHHHHHHHTCSCC-TTCEEEEECSSSTTCEEEEEEETTEEEEEEEEESSSE-----ESSTTSCCBSCHHH
T ss_pred             CcCCccCCCCCHHHHHHHhcCCC-CCeEEEEecCCCCccEEEEEEecCceEEEEEEEcCCc-----EEecCCcccCCHHH
Confidence            45799999999999999997644 6999999999889999999999999999999875432     666 4589999999


Q ss_pred             hHHhhhcccCC-Cccccccccc
Q psy10852         88 LLAFYKVHYLD-TSPLIKPATK  108 (563)
Q Consensus        88 Li~~y~~~~~~-~~~L~~p~~~  108 (563)
                      ||+||+.++.+ .+.|+.||++
T Consensus        76 LI~~y~~~~~~L~~~L~~P~~k   97 (97)
T d1jwoa_          76 MVEHYSKDKGAICTKLVRPKRK   97 (97)
T ss_dssp             HHHHHHHCCTTSSSCCCCBCCC
T ss_pred             HHHHHhhCCCCCCccCCccCcC
Confidence            99999998775 5678888864

>d1mila_ d.93.1.1 (A:) Shc adaptor protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Shc adaptor protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.2e-24  Score=175.55  Aligned_cols=95  Identities=27%  Similarity=0.491  Sum_probs=82.2

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeCCceecCh
Q psy10852          6 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDL   85 (563)
Q Consensus         6 ~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~sl   85 (563)
                      +.+++++||||.|+|++||++|+.   +|+||||.|++.+|.|+|||+.+++|+||+|...++     .|.+.+..|+||
T Consensus         2 ~~l~~~pWyhG~i~R~~Ae~lL~~---~G~FLVR~S~~~~g~~vLSv~~~~~v~H~~I~~~~~-----~~~~~~~~F~sl   73 (104)
T d1mila_           2 SQLRGEPWFHGKLSRREAEALLQL---NGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPEG-----VVRTKDHRFESV   73 (104)
T ss_dssp             CSTTTCTTBCSSCCHHHHHTTCCS---TTEEEEEECCSSCSSEEEEEEETTEEEEEEEBCTTS-----SEECSSCEESSH
T ss_pred             cccccCCCcCCCCCHHHHHHHHhc---CCcEEEEecCCCCCCEEEEEEEccccceEEEEeCCC-----EEEeCCeeECCH
Confidence            467889999999999999999964   799999999998999999999999999999976433     288889999999


Q ss_pred             HhhHHhhhcccCC------Cccccccccc
Q psy10852         86 PSLLAFYKVHYLD------TSPLIKPATK  108 (563)
Q Consensus        86 ~~Li~~y~~~~~~------~~~L~~p~~~  108 (563)
                      .+||+||+.+++.      .+.|+.|+.+
T Consensus        74 ~~LV~~y~~~~~~~~~~~~~~~L~~Pi~R  102 (104)
T d1mila_          74 SHLISYHMDNHLPIISAGSELCLQQPVER  102 (104)
T ss_dssp             HHHHHHHHHHTCCEEETTEEECCCEECCC
T ss_pred             HHHHHHHhhCCCCcccCCcceEeCCCcCC
Confidence            9999999998764      2456777765

>d1d4ta_ d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: The Xlp protein Sap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=8.3e-24  Score=174.44  Aligned_cols=97  Identities=24%  Similarity=0.476  Sum_probs=83.3

Q ss_pred             CCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEe------CCce
Q psy10852          8 HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKI------GDKT   81 (563)
Q Consensus         8 ~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~------~~~~   81 (563)
                      +++++||||.|+|++||++|+..+.+|+||||+|++.+|.|+||++.+++|+||+|.+..++    .|.+      ++..
T Consensus         1 le~~pwyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~~~Lsv~~~~~v~H~~I~~~~~~----~~~~~~~~~~~~~~   76 (104)
T d1d4ta_           1 MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETG----SWSAETAPGVHKRY   76 (104)
T ss_dssp             CTTCTTBCCSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTS----CEEECBCTTSCCCC
T ss_pred             CCcCCccccCCCHHHHHHHHhhCCCCCeEEEEecCCCCCCEEEEEecCCCceEEEEEEcCCC----cEEEeeccCCCCcc
Confidence            47789999999999999999765557999999999989999999999999999999987655    2544      2478


Q ss_pred             ecChHhhHHhhhcccCC-Cccccccccc
Q psy10852         82 FSDLPSLLAFYKVHYLD-TSPLIKPATK  108 (563)
Q Consensus        82 F~sl~~Li~~y~~~~~~-~~~L~~p~~~  108 (563)
                      |+||.+||+||++++.+ .+.|+.||++
T Consensus        77 F~sl~~Li~~y~~~~~gl~~~L~~P~~r  104 (104)
T d1d4ta_          77 FRKIKNLISAFQKPDQGIVIPLQYPVEK  104 (104)
T ss_dssp             BSSHHHHHHHHTSSSSSSSSCCCEECCC
T ss_pred             cCCHHHHHHHHhhCCCCCcEeCCccccC
Confidence            99999999999998776 5678888864

>d1jyra_ d.93.1.1 (A:) Growth factor receptor-bound protein 2 (GRB2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 2 (GRB2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=9.1e-24  Score=170.13  Aligned_cols=85  Identities=27%  Similarity=0.540  Sum_probs=77.3

Q ss_pred             CCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeCCceecChHhhH
Q psy10852         10 RNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLL   89 (563)
Q Consensus        10 ~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~sl~~Li   89 (563)
                      ++|||||.|+|++||++|...+++|+||||+|++.+|.|+|||+.+++|+||+|.+..++    .|.+++..|.||.+||
T Consensus         2 s~pWy~g~isR~~Ae~lL~~~~~~G~FLvR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g----~~~~~~~~F~sl~~LV   77 (96)
T d1jyra_           2 SMAWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAG----KYFLWVVKFNSLNELV   77 (96)
T ss_dssp             CCTTBCCSCCHHHHHHHHHTCCSTTBEEEEECSSSTTCEEEEEEETTEEEEEECEECTTS----CEESSSCEESSHHHHH
T ss_pred             CCCccCCCCCHHHHHHHHhhCCCCCeEEEEecCCCCCCEEEEEEeCCceEEEEEEECCCC----eEEeCCccCCCHHHHH
Confidence            579999999999999999765567999999999889999999999999999999987654    4888889999999999


Q ss_pred             HhhhcccCC
Q psy10852         90 AFYKVHYLD   98 (563)
Q Consensus        90 ~~y~~~~~~   98 (563)
                      +||+.+++.
T Consensus        78 ~~y~~~~l~   86 (96)
T d1jyra_          78 DYHRSTSVS   86 (96)
T ss_dssp             HHTTSSCSC
T ss_pred             HHHhhCCCC
Confidence            999999874

>d2qmsa1 d.93.1.1 (A:420-532) Growth factor receptor-bound protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.1e-23  Score=175.53  Aligned_cols=101  Identities=27%  Similarity=0.434  Sum_probs=86.9

Q ss_pred             CCCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeCC--ceec
Q psy10852          7 PHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD--KTFS   83 (563)
Q Consensus         7 ~~~~~~w~~g~i~r~~ae~~L~~-~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~--~~F~   83 (563)
                      .|.+++||||.|+|++||++|.. ..++|+||||+|++.+|.|+|||+.+++|+||+|.....+ +...|.+.+  ..|.
T Consensus         6 ~h~~~~Wy~g~isR~~Ae~lL~~~g~~dG~FLvR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~-~~~~~~~~~~~~~F~   84 (113)
T d2qmsa1           6 IHRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEE-GRLYFSMDDGQTRFT   84 (113)
T ss_dssp             STTCCTTEEEEBCHHHHHHHHHHTTCCTTEEEEEECSSCTTCEEEEEEETTEEEEEEEEEEESS-SCEEEESSTTSSCBS
T ss_pred             hhcCCCccCCCCCHHHHHHHHhccCCCCccEEEEeccCCCCCEEEEEEeCCeEEEEEEEEeCCC-CeEEEEecCCCcccC
Confidence            57889999999999999999985 3567999999999988999999999999999999987654 344467754  5799


Q ss_pred             ChHhhHHhhhcccCC-Cccccccccc
Q psy10852         84 DLPSLLAFYKVHYLD-TSPLIKPATK  108 (563)
Q Consensus        84 sl~~Li~~y~~~~~~-~~~L~~p~~~  108 (563)
                      ||.+||+||+.++++ .|.|+.||++
T Consensus        85 sl~~LI~~y~~~~~~L~~~L~~pc~r  110 (113)
T d2qmsa1          85 DLLQLVEFHQLNRGILPCLLRHCCTR  110 (113)
T ss_dssp             SHHHHHHHHTTCCTTSSSCCCEECCS
T ss_pred             CHHHHHHHhccCCCCCccccCCCCcC
Confidence            999999999999875 5778899887

>d1i3za_ d.93.1.1 (A:) Ews/fli1 activated transcript 2, Eat2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Ews/fli1 activated transcript 2, Eat2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=1.1e-23  Score=172.61  Aligned_cols=95  Identities=29%  Similarity=0.500  Sum_probs=80.3

Q ss_pred             CCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeC------Cceec
Q psy10852         10 RNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG------DKTFS   83 (563)
Q Consensus        10 ~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~------~~~F~   83 (563)
                      ..|||||.|+|++||++|.....+|+||||+|++.+|.|+|||+.+++|+||+|.+..++    .|.+.      ...|+
T Consensus         2 d~PWy~g~isR~~AE~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g----~~~~~~~~~~~~~~F~   77 (103)
T d1i3za_           2 DLPYYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHG----YYRIETDAHTPRTIFP   77 (103)
T ss_dssp             CCTTEESSCCHHHHHHHHHTTCSTTEEEEEECSSSTTCEEEEEECSSSEEEEEEEECTTS----CEEECBCTTSCCCEES
T ss_pred             CCCcccCCCCHHHHHHHHHhCCCCCeEEEEecCCCCCCEEEEEEeCCeEEEEEeEEcCCC----cEEEeccCCcCccccC
Confidence            468999999999999999765567999999999989999999999999999999987654    36663      25799


Q ss_pred             ChHhhHHhhhcccCC-Cccccccccc
Q psy10852         84 DLPSLLAFYKVHYLD-TSPLIKPATK  108 (563)
Q Consensus        84 sl~~Li~~y~~~~~~-~~~L~~p~~~  108 (563)
                      ||.+||+||+.++.+ .+.|+.||.|
T Consensus        78 sl~~LV~~y~~~~~gl~~~L~~P~~R  103 (103)
T d1i3za_          78 NLQELVSKYGKPGQGLVVHLSNPIMR  103 (103)
T ss_dssp             SSHHHHHHTTSSSSSSSSCCCEECC-
T ss_pred             CHHHHHHHhhhCCCCCeEeCCccccC
Confidence            999999999988765 4567778754

>d1k9aa2 d.93.1.1 (A:77-177) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=8.5e-24  Score=172.30  Aligned_cols=94  Identities=33%  Similarity=0.582  Sum_probs=82.4

Q ss_pred             CCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeC-CceecChHh
Q psy10852          9 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDLPS   87 (563)
Q Consensus         9 ~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~sl~~   87 (563)
                      ...|||||.|+|++||++|++.. +|+||||+|++.+|.|+|||+.+++|+||+|.....+     |.+. +..|+||.+
T Consensus         2 ~~~PWy~g~isR~~Ae~lL~~~~-~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~-----~~~~~~~~F~sl~~   75 (101)
T d1k9aa2           2 SLMPWFHGKITREQAERLLYPPE-TGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMYHASK-----LSIDEEVYFENLMQ   75 (101)
T ss_dssp             ESCTTBCTTCCHHHHHHHTCSCC-TTEEEEEECSSSTTSEEEEEECSSSEEEEEEEEETTE-----EESSSSSCBSSHHH
T ss_pred             CcCCccCCCCCHHHHHHHHcCCC-CCCEEEeccCCCCCCEEEEEEeCCccEEEEEEEcCCC-----ceecCCcccCCHHH
Confidence            35799999999999999998754 5999999999889999999999999999999986544     7774 588999999


Q ss_pred             hHHhhhcccCC-Cccccccccc
Q psy10852         88 LLAFYKVHYLD-TSPLIKPATK  108 (563)
Q Consensus        88 Li~~y~~~~~~-~~~L~~p~~~  108 (563)
                      ||+||+.++.+ .+.|..||++
T Consensus        76 LV~~y~~~~~gl~~~L~~P~~~   97 (101)
T d1k9aa2          76 LVEHYTTDADGLCTRLIKPKVM   97 (101)
T ss_dssp             HHHHHHHCCTTSSSCCCEECCC
T ss_pred             HHHHHhhCCCCCceeCCccccC
Confidence            99999998876 6778888875

>d2oq1a2 d.93.1.1 (A:135-258) Tyrosine-protein kinase zap-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase zap-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.4e-23  Score=177.17  Aligned_cols=97  Identities=29%  Similarity=0.480  Sum_probs=84.2

Q ss_pred             CCCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeC-CceecC
Q psy10852          7 PHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSD   84 (563)
Q Consensus         7 ~~~~~~w~~g~i~r~~ae~~L~~-~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~s   84 (563)
                      .++.++||||.|+|++||++|.. ...+|+||||.|++ +|.|+|||+.+++|+||+|.+...+    .|.++ +..|.|
T Consensus        25 ~~e~~pWyhg~isR~eAe~lL~~~~~~dGtFLVR~S~~-~g~yvLSv~~~~~v~H~~I~~~~~g----~~~l~~~~~F~s   99 (124)
T d2oq1a2          25 AHERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRKE-QGTYALSLIYGKTVYHYLISQDKAG----KYCIPEGTKFDT   99 (124)
T ss_dssp             GGGGSTTBCSSCCHHHHHHHHHSSCCCTTEEEEEECSS-TTEEEEEEEETTEEEEEEEEECTTS----CEESTTSCCBSS
T ss_pred             cccCCCCccCCCCHHHHHHHHhhcCCCCceEEeEecCC-CCCEEEEeecCCceEEEEEEECCCC----CEEeCCCcccCC
Confidence            46788999999999999999986 35679999999976 7899999999999999999987654    37785 478999


Q ss_pred             hHhhHHhhhcccCC-Cccccccccc
Q psy10852         85 LPSLLAFYKVHYLD-TSPLIKPATK  108 (563)
Q Consensus        85 l~~Li~~y~~~~~~-~~~L~~p~~~  108 (563)
                      |.+||+||+.++.+ .+.|+.||+.
T Consensus       100 l~~LV~~y~~~~~gL~~~L~~PcP~  124 (124)
T d2oq1a2         100 LWQLVEYLKLKADGLIYCLKEACPN  124 (124)
T ss_dssp             HHHHHHHHHHCCTTSSSCCCSBCCC
T ss_pred             HHHHHHHHhhCCCCCcccCCCcCcC
Confidence            99999999998765 5788888873

>d1a81a1 d.93.1.1 (A:9-137) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Syk tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.7e-23  Score=177.45  Aligned_cols=97  Identities=28%  Similarity=0.486  Sum_probs=84.2

Q ss_pred             CCCCCccccCCCHHHHHHHHcCC-CCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeC-CceecCh
Q psy10852          8 HDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDL   85 (563)
Q Consensus         8 ~~~~~w~~g~i~r~~ae~~L~~~-~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~sl   85 (563)
                      .+++|||||.|+|++||++|... ..+|+||||+|++.+|.|+|||+.+++|+||+|.+..++    +|.+. +..|+||
T Consensus         2 ~~~~PWyhg~isR~~Ae~lL~~~g~~dG~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g----~~~i~~~~~F~sl   77 (129)
T d1a81a1           2 ANHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERELNG----TYAIAGGRTHASP   77 (129)
T ss_dssp             TTSSTTBCSSCCHHHHHHHHHHTTCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTS----CEEETTSCCBSSH
T ss_pred             CCCCCcccCCCCHHHHHHHHHhcCCCCccEEEEccCCCCcceEEEeeecccceEEEEEEcCCC----CeeecCCcccCCH
Confidence            35679999999999999999763 467999999999989999999999999999999987654    37775 5789999


Q ss_pred             HhhHHhhhcccCC-Cccccccccc
Q psy10852         86 PSLLAFYKVHYLD-TSPLIKPATK  108 (563)
Q Consensus        86 ~~Li~~y~~~~~~-~~~L~~p~~~  108 (563)
                      .+||+||+.++.+ .|.|..||.+
T Consensus        78 ~eLV~~Y~~~~~gl~~~L~~P~~~  101 (129)
T d1a81a1          78 ADLCHYHSQESDGLVCLLKKPFNR  101 (129)
T ss_dssp             HHHHHHHTTCCTTSSSCCCEECCC
T ss_pred             HHHHHHHhhCCCCCcccCCCCCCC
Confidence            9999999998876 5678888865

>d1lkka_ d.93.1.1 (A:) p56-lck tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: p56-lck tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.8e-23  Score=172.32  Aligned_cols=96  Identities=28%  Similarity=0.565  Sum_probs=81.9

Q ss_pred             CCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEecCCCCcceEEEEEECC-----eEEEEEEEEecCCCcceEEEeC-Cc
Q psy10852          8 HDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENN-----KVSHYIINKITNTEQQTCYKIG-DK   80 (563)
Q Consensus         8 ~~~~~w~~g~i~r~~ae~~L~~-~~~~G~FLvR~s~~~~~~~~lsv~~~~-----~v~h~~I~~~~~~~~~~~~~~~-~~   80 (563)
                      +++++||||.|+|++||++|.. ...+|+||||+|++.+|.|+||++..+     .|+||+|....++    .|.+. +.
T Consensus         1 le~~pWy~g~isR~eAe~~L~~~~~~~GtFLVR~S~~~~g~~~lsv~~~~~~~~~~v~h~~i~~~~~~----~~~~~~~~   76 (105)
T d1lkka_           1 LEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNG----GFYISPRI   76 (105)
T ss_dssp             CCCCTTBCTTCCHHHHHHHHTSTTCCTTCEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEEECTTS----CEESSTTS
T ss_pred             CccCCccCCCCCHHHHHHHHHhcCCCCCcEEEEccCCCCCCEEEEEEEcccCCCccEEEEEEEEcCCC----CEEecCCc
Confidence            5788999999999999999965 356799999999998999999998743     4999999987655    37775 57


Q ss_pred             eecChHhhHHhhhcccCC-Ccccccccc
Q psy10852         81 TFSDLPSLLAFYKVHYLD-TSPLIKPAT  107 (563)
Q Consensus        81 ~F~sl~~Li~~y~~~~~~-~~~L~~p~~  107 (563)
                      .|+||.+||+||+.++++ .+.|+.||+
T Consensus        77 ~F~sl~~LV~~y~~~~~gL~~~L~~Pcp  104 (105)
T d1lkka_          77 TFPGLHELVRHYTNASDGLCTRLSRPCQ  104 (105)
T ss_dssp             CBSSHHHHHHHHHHCCTTSSSCCCSBCC
T ss_pred             ccCCHHHHHHHHhhCCCCCCccCCCcCC
Confidence            899999999999999876 567888886

>d2shpa2 d.93.1.1 (A:2-110) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine phoshatase shp-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.1e-23  Score=172.65  Aligned_cols=95  Identities=28%  Similarity=0.503  Sum_probs=80.5

Q ss_pred             CCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEe-CCceecChHh
Q psy10852          9 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKI-GDKTFSDLPS   87 (563)
Q Consensus         9 ~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~-~~~~F~sl~~   87 (563)
                      ++++||||.|+|++||++|+..+.+|+||||+|.+.+|.|+|||+.+++|+||+|...+++     |.+ ++..|+||.+
T Consensus         1 ~~~~Wy~g~isR~~Ae~lL~~~~~~G~FLvR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~-----~~~~~~~~F~sl~~   75 (109)
T d2shpa2           1 KSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTGDY-----YDLYGGEKFATLAE   75 (109)
T ss_dssp             CCSTTBCSSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEECSSSC-----EEETTSCEESSHHH
T ss_pred             CCCccccCCCCHHHHHHHHhhCCCCCeEEEEecCCCCCCEEEEEEeCCcEEEEEEEEcCCe-----EEEcCCcccCCHHH
Confidence            4689999999999999999775557999999999889999999999999999999876544     555 6689999999


Q ss_pred             hHHhhhcccCC-------Cccccccccc
Q psy10852         88 LLAFYKVHYLD-------TSPLIKPATK  108 (563)
Q Consensus        88 Li~~y~~~~~~-------~~~L~~p~~~  108 (563)
                      ||+||+.+++.       .+.|+.|+..
T Consensus        76 LV~~y~~~~~~~~~~~~~~~~L~~P~~~  103 (109)
T d2shpa2          76 LVQYYMEHHGQLKEKNGDVIELKYPLNC  103 (109)
T ss_dssp             HHHHHHTCTTCSBSSSSCBCCCCEECCC
T ss_pred             HHHHHHHCCCCcccCCCCeeeccccCCC
Confidence            99999988753       2456677654

>d1a81a2 d.93.1.1 (A:138-262) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Syk tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.5e-23  Score=176.07  Aligned_cols=98  Identities=33%  Similarity=0.579  Sum_probs=84.3

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeC-Cceec
Q psy10852          6 DPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFS   83 (563)
Q Consensus         6 ~~~~~~~w~~g~i~r~~ae~~L~~-~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~   83 (563)
                      ..|+.++||||.|+|++||++|.. ...+|+||||.|++ +|.|+|||+.+++|+||+|.+..++    .|.++ +..|.
T Consensus        24 ~~he~~pWyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~-~~~yvLSv~~~~~v~H~~I~~~~~g----~~~~~~~~~F~   98 (125)
T d1a81a2          24 TAHEKMPWFHGKISREESEQIVLIGSKTNGKFLIRARDN-NGSYALCLLHEGKVLHYRIDKDKTG----KLSIPEGKKFD   98 (125)
T ss_dssp             TSGGGSTTEEEECCHHHHHHHHHSSCCCTTCEEEEECSS-SSCEEEEEEETTEEEEEEEEECTTS----CEECTTSCCBS
T ss_pred             cccccCCccCCCCCHHHHHHHHHhcCCCCceEEEEecCC-CCCEEEEeeccccceeEeeeEcCCC----cEeccCCcccC
Confidence            357888999999999999999965 45579999999876 7889999999999999999987655    37775 57899


Q ss_pred             ChHhhHHhhhcccCC-Cccccccccc
Q psy10852         84 DLPSLLAFYKVHYLD-TSPLIKPATK  108 (563)
Q Consensus        84 sl~~Li~~y~~~~~~-~~~L~~p~~~  108 (563)
                      ||.+||+||+.++.+ .|.|+.||++
T Consensus        99 sL~~LI~~y~~~~~gL~~~L~~P~~k  124 (125)
T d1a81a2          99 TLWQLVEHYSYKADGLLRVLTVPCQK  124 (125)
T ss_dssp             CHHHHHHHHTTCCTTSSSCCCCBCCC
T ss_pred             CHHHHHHHHhhCCCCCCccCCeeCCC
Confidence            999999999988764 5788899875

>d1o48a_ d.93.1.1 (A:) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.7e-23  Score=171.37  Aligned_cols=97  Identities=35%  Similarity=0.616  Sum_probs=82.5

Q ss_pred             CCCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEecCCCCcceEEEEEEC-----CeEEEEEEEEecCCCcceEEEeC-C
Q psy10852          7 PHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKEN-----NKVSHYIINKITNTEQQTCYKIG-D   79 (563)
Q Consensus         7 ~~~~~~w~~g~i~r~~ae~~L~~-~~~~G~FLvR~s~~~~~~~~lsv~~~-----~~v~h~~I~~~~~~~~~~~~~~~-~   79 (563)
                      .+++++||||.|+|++||++|++ ...+|+||||+|.+.+|.|+|||+..     ..|+||+|.+..++    .|.+. +
T Consensus         1 ~l~~~~Wy~g~i~R~eAe~lL~~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~~i~h~~i~~~~~g----~~~~~~~   76 (106)
T d1o48a_           1 SIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSG----GFYITSR   76 (106)
T ss_dssp             CGGGSTTEEESCCHHHHHHHHCCTTCCTTCEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEEECTTS----CEESSTT
T ss_pred             CcccCCccCCCCCHHHHHHHHHhcCCCCCcEEEEcccCCCCCEEEEEEecccCcccceEEEEEEEecCC----CEEEcCC
Confidence            36789999999999999999976 35679999999998899999999864     36889999987655    37774 5


Q ss_pred             ceecChHhhHHhhhcccCC-Ccccccccc
Q psy10852         80 KTFSDLPSLLAFYKVHYLD-TSPLIKPAT  107 (563)
Q Consensus        80 ~~F~sl~~Li~~y~~~~~~-~~~L~~p~~  107 (563)
                      ..|+||.+||+||+.++++ .+.|+.||+
T Consensus        77 ~~F~sl~eLV~~y~~~~~gL~~~L~~pcP  105 (106)
T d1o48a_          77 TQFNSLQQLVAYYSKHADGLCHRLTTVCP  105 (106)
T ss_dssp             SEESSHHHHHHHHTTCCTTSSSCCCSBCC
T ss_pred             eeECCHHHHHHHHhhCCCCCCccCCCcCC
Confidence            7899999999999999875 577888886

>d1g83a2 d.93.1.1 (A:142-245) Tyrosine kinase Fyn {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine kinase Fyn
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=4.3e-23  Score=169.77  Aligned_cols=96  Identities=35%  Similarity=0.663  Sum_probs=80.6

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEecCCCCcceEEEEEE-----CCeEEEEEEEEecCCCcceEEEe-C
Q psy10852          6 DPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKITNTEQQTCYKI-G   78 (563)
Q Consensus         6 ~~~~~~~w~~g~i~r~~ae~~L~~-~~~~G~FLvR~s~~~~~~~~lsv~~-----~~~v~h~~I~~~~~~~~~~~~~~-~   78 (563)
                      |.+++++||||.|+|++||++|.. ...+|+||||+|++.+|.|+||++.     ++.|+||+|....++    .|.+ .
T Consensus         1 ~~l~~~~Wy~g~i~R~eAe~~L~~~g~~~G~FLVR~S~~~~g~~~Lsv~~~~~~~~~~v~h~~i~~~~~g----~~~~~~   76 (104)
T d1g83a2           1 DSIQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKLDNG----GYYITT   76 (104)
T ss_dssp             TSGGGSSSBCTTCCHHHHHHHHHSTTCCTTCEEEEECSSSTTCEEEEEEEECSSSCEEEEEEEEEECTTS----CEEETT
T ss_pred             CccccCCCcCCCCCHHHHHHHHHhcCCCCCcEEEeccCCCCCCeEEEEEEeecCcCCeEEEEEEEEcCCC----CEEecC
Confidence            567889999999999999999976 3567999999999989999999985     567999999987655    3666 4


Q ss_pred             CceecChHhhHHhhhcccCC-Ccccccc
Q psy10852         79 DKTFSDLPSLLAFYKVHYLD-TSPLIKP  105 (563)
Q Consensus        79 ~~~F~sl~~Li~~y~~~~~~-~~~L~~p  105 (563)
                      +..|+||.+||+||+.++++ .|.|+.|
T Consensus        77 ~~~F~sl~~LV~~y~~~~~gL~~~L~~P  104 (104)
T d1g83a2          77 RAQFETLQQLVQHYSERAAGLSSRLVVP  104 (104)
T ss_dssp             TEEESSHHHHHHHHHHCCTTSSSCCCCC
T ss_pred             CcccCCHHHHHHHHhhCCCCCceeCCCC
Confidence            58999999999999999865 4555544

>d1blja_ d.93.1.1 (A:) P55 Blk protein tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: P55 Blk protein tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=2.9e-23  Score=173.58  Aligned_cols=101  Identities=29%  Similarity=0.528  Sum_probs=86.8

Q ss_pred             CCCCCCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEecCCCCcceEEEEEE----CCeEEEEEEEEecCCCcceEEEe-
Q psy10852          4 TFDPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKE----NNKVSHYIINKITNTEQQTCYKI-   77 (563)
Q Consensus         4 ~~~~~~~~~w~~g~i~r~~ae~~L~~-~~~~G~FLvR~s~~~~~~~~lsv~~----~~~v~h~~I~~~~~~~~~~~~~~-   77 (563)
                      -.+.++.++||||.|+|++||++|.. ...+|+||||+|++.+|.|+|||+.    ++.|+||+|.+..++    .|.+ 
T Consensus         5 p~~~l~~e~Wy~g~isR~eAe~~L~~~~~~~G~FLVR~S~~~~g~~~Lsv~~~~~~~~~v~H~~i~~~~~g----~~~l~   80 (114)
T d1blja_           5 PVETLEVEKWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEVVKHYKIRSLDNG----GYYIS   80 (114)
T ss_dssp             SSCCSCCSSSBCCSCCHHHHHHHHSSTTCCTTCEEBCBCTTCSSCEEEEECBCCTTTCBCCCEEEEEETTT----EEEEE
T ss_pred             CcCccccCCCcCCCCCHHHHHHHHHhcCCCCceEEEeccCCCCCCeEEEEEeeccCCCEEEEEEEEEcCCC----CEEec
Confidence            46788899999999999999999875 3567999999999889999999985    456999999998765    3666 


Q ss_pred             CCceecChHhhHHhhhcccCC-Cccccccccc
Q psy10852         78 GDKTFSDLPSLLAFYKVHYLD-TSPLIKPATK  108 (563)
Q Consensus        78 ~~~~F~sl~~Li~~y~~~~~~-~~~L~~p~~~  108 (563)
                      .+..|.||.+||+||+.++++ .+.|+.||++
T Consensus        81 ~~~~F~sl~eLV~~y~~~~~gL~~~L~~PC~~  112 (114)
T d1blja_          81 PRITFPTLQALVQHYSKKGDGLCQKLTLPCVN  112 (114)
T ss_dssp             TTEEESSHHHHHHHHHHCCSSSSSCCCCCSCC
T ss_pred             CCceECCHHHHHHHHhhCCCCCCccCCccCcC
Confidence            457899999999999999876 6788999986

>d1r1qa_ d.93.1.1 (A:) GRB2-related adaptor protein 2 (MONA, GRID) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: GRB2-related adaptor protein 2 (MONA, GRID)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=4.4e-23  Score=166.73  Aligned_cols=87  Identities=22%  Similarity=0.530  Sum_probs=78.4

Q ss_pred             CCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeCCceecChH
Q psy10852          7 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLP   86 (563)
Q Consensus         7 ~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~sl~   86 (563)
                      +++..+||||.|+|++||++|.+. ++|+||||.|++.+|.|+|||+.+++|+||+|.+..++    .|.+++..|+||.
T Consensus         2 d~~~~~Wy~g~isR~~Ae~lL~~~-~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g----~~~~~~~~F~sl~   76 (97)
T d1r1qa_           2 DIEFPEWFHEGLSRHQAENLLMGK-DIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTKG----NYFLWTEKFPSLN   76 (97)
T ss_dssp             CCSCCTTBCTTCCHHHHHHHHHTS-CTTCEEEEECSSSTTCEEEEEECSSSEEEEECEECTTC----CEESSSCCBSSHH
T ss_pred             CcccCCccCCCCCHHHHHHHHhcC-CCCCEEEeecCCCCCCEEEEEEecCCeEEEEEEEcCCC----eEEeCCCCcCCHH
Confidence            457789999999999999999874 46999999999889999999999999999999998665    4888889999999


Q ss_pred             hhHHhhhcccCC
Q psy10852         87 SLLAFYKVHYLD   98 (563)
Q Consensus        87 ~Li~~y~~~~~~   98 (563)
                      +||+||+.+++.
T Consensus        77 ~LV~~y~~~~l~   88 (97)
T d1r1qa_          77 KLVDYYRTTSIS   88 (97)
T ss_dssp             HHHHHTTTSCSC
T ss_pred             HHHHHHccCCcC
Confidence            999999999773

>d1luia_ d.93.1.1 (A:) Itk/tsk protein tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Itk/tsk protein tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=5.1e-23  Score=170.07  Aligned_cols=99  Identities=27%  Similarity=0.519  Sum_probs=82.3

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEE------CCeEEEEEEEEecCCCcceEEEe-C
Q psy10852          6 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKE------NNKVSHYIINKITNTEQQTCYKI-G   78 (563)
Q Consensus         6 ~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~------~~~v~h~~I~~~~~~~~~~~~~~-~   78 (563)
                      +.++.++||||.|+|++||++|++...+|+||||+|++ +|.|+|||+.      ++.|+||+|....++.+.  |.+ .
T Consensus         1 ~~l~~~~Wy~g~isR~eAe~lL~~~~~~G~FLVR~S~~-~g~y~LSv~~~~~~~~~~~i~h~~I~~~~~~~~~--~~~~~   77 (108)
T d1luia_           1 NNLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRT-PGTYTVSVFTKAIISENPCIKHYHIKETNDSPKR--YYVAE   77 (108)
T ss_dssp             CCCTTSTTBCTTCCHHHHHHHHHHHCCTTEEEEEECCT-TTCEEEEEECSCCTTTCSCEEEEECEECCCSSCC--EESSS
T ss_pred             CccccCCCcCCCCCHHHHHHHHHhcCCCCeEEEEecCC-CCCEEEEEEecCCcccCCceeEEEEEEecCCCce--eecCC
Confidence            35788899999999999999997644579999999976 8999999986      456999999987655333  555 4


Q ss_pred             CceecChHhhHHhhhcccCC-Ccccccccc
Q psy10852         79 DKTFSDLPSLLAFYKVHYLD-TSPLIKPAT  107 (563)
Q Consensus        79 ~~~F~sl~~Li~~y~~~~~~-~~~L~~p~~  107 (563)
                      +..|+||.+||+||+.++.+ .+.|++||+
T Consensus        78 ~~~F~sl~~LV~~y~~~~~~L~~~L~~Pv~  107 (108)
T d1luia_          78 KYVFDSIPLLIQYHQYNGGGLVTRLRYPVC  107 (108)
T ss_dssp             SCCBSSHHHHHHHHHTTCCSSSSSSSEECC
T ss_pred             CcccCCHHHHHHHHhhCCCCCccCCCCcCC
Confidence            58999999999999999875 577888875

>d1qcfa2 d.93.1.1 (A:146-248) Hemopoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Hemopoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=9.2e-23  Score=167.44  Aligned_cols=94  Identities=33%  Similarity=0.576  Sum_probs=80.6

Q ss_pred             CCccccCCCHHHHHHHHcC-CCCCCeEEEEecCCCCcceEEEEEE-----CCeEEEEEEEEecCCCcceEEEe-CCceec
Q psy10852         11 NSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKITNTEQQTCYKI-GDKTFS   83 (563)
Q Consensus        11 ~~w~~g~i~r~~ae~~L~~-~~~~G~FLvR~s~~~~~~~~lsv~~-----~~~v~h~~I~~~~~~~~~~~~~~-~~~~F~   83 (563)
                      ++||||.|+|++||++|.. ...+|+||||+|++.+|.|+|||+.     ++.|+||+|....++    .|.+ ++..|+
T Consensus         1 e~Wy~g~isR~eAe~~L~~~~~~~G~FLVR~S~~~~g~~~Lsv~~~~~~~~~~v~H~~i~~~~~g----~~~~~~~~~F~   76 (103)
T d1qcfa2           1 EEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNG----GFYISPRSTFS   76 (103)
T ss_dssp             STTEETTCCHHHHHHHHHSTTCCTTCEEEEECSSSTTSEEEEEEEEETTTEEEEEEEEEEECTTS----CEESSSSSCBS
T ss_pred             CCccCCCCCHHHHHHHHhhcCCCCCcEEEEccCCCCCCeEEEEEecCCCcCceEEEEEEEEcCCC----ceeecCCcccC
Confidence            5899999999999999965 3567999999999989999999985     578999999987655    3666 457899


Q ss_pred             ChHhhHHhhhcccCC-Cccccccccc
Q psy10852         84 DLPSLLAFYKVHYLD-TSPLIKPATK  108 (563)
Q Consensus        84 sl~~Li~~y~~~~~~-~~~L~~p~~~  108 (563)
                      ||.+||+||+.++++ .+.|..||++
T Consensus        77 sl~~LV~~y~~~~~gL~~~L~~PC~~  102 (103)
T d1qcfa2          77 TLQELVDHYKKGNDGLCQKLSVPCMS  102 (103)
T ss_dssp             SHHHHHHHHTSSCTTSSSCCCSBCCC
T ss_pred             CHHHHHHHHhhCCCCCCccCCccCCC
Confidence            999999999998875 5788899875

>d2eyva1 d.93.1.1 (A:12-120) Crk proto-oncogen {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Crk proto-oncogen
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.3e-22  Score=167.20  Aligned_cols=96  Identities=53%  Similarity=0.958  Sum_probs=82.5

Q ss_pred             CccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCC-------------cceEEEeC
Q psy10852         12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTE-------------QQTCYKIG   78 (563)
Q Consensus        12 ~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~-------------~~~~~~~~   78 (563)
                      .||||.|+|++||++|+..+ +|+||||+|++.+|.|+||++.+++|+||+|.+...+.             ...+|.++
T Consensus         1 sWy~g~isR~~Ae~lL~~~~-~G~FLVR~S~~~~~~~~LS~~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (109)
T d2eyva1           1 SWYWGRLSRQEAVALLQGQR-HGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVSPSRLRIG   79 (109)
T ss_dssp             TSCCBCCCHHHHHHHCSSCS-TTCEEEECCCSSSSCEEEEEEETTEEEEEEEECCCCSSCCCSSSSCCCCSCCCCCEEET
T ss_pred             CCCCCCCCHHHHHHHhcCCC-CCeEEeeecCCCCCCEEEEEEECCEEEEEEEEEcCCcceeeccccccccccccceEEeC
Confidence            59999999999999997654 59999999998899999999999999999999865431             01135666


Q ss_pred             CceecChHhhHHhhhcccCCCccccccccc
Q psy10852         79 DKTFSDLPSLLAFYKVHYLDTSPLIKPATK  108 (563)
Q Consensus        79 ~~~F~sl~~Li~~y~~~~~~~~~L~~p~~~  108 (563)
                      +..|+||.+||+||+.+++..+.|..||+|
T Consensus        80 ~~~F~sl~~LV~~y~~~~l~~~~L~~P~~r  109 (109)
T d2eyva1          80 DQEFDSLPALLEFYKIHYLDTTTLIEPVSR  109 (109)
T ss_dssp             TEEESSHHHHHHHSSSSCSSSSCCCSBCCS
T ss_pred             CeeeCCHHHHHHHHhhCcCCCCccCCcCCC
Confidence            789999999999999999988899999875

>d2izva2 d.93.1.1 (A:274-385) Suppressor of cytokine signaling 4, SOCS-4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Suppressor of cytokine signaling 4, SOCS-4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.9e-22  Score=167.72  Aligned_cols=97  Identities=23%  Similarity=0.332  Sum_probs=82.1

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeCC-----c
Q psy10852          6 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD-----K   80 (563)
Q Consensus         6 ~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~-----~   80 (563)
                      ..+++++||||.|+|++||++|++.. +|+||||+|++.+|.|+|||+.++.|+||+|.+.+++     |.+..     .
T Consensus         6 ~~l~~~~Wy~g~isR~~Ae~lL~~~~-~GtFLVR~S~~~~~~~~LSv~~~~~v~H~~I~~~~~~-----~~l~~~~~~~~   79 (112)
T d2izva2           6 LQINNNPCYWGVMDKYAAEALLEGKP-EGTFLLRDSAQEDYLFSVSFRRYSRSLHARIEQWNHN-----FSFDAHDPCVF   79 (112)
T ss_dssp             HHHHHCTTEEEECCHHHHHHHHTTCC-TTEEEEEECSSTTCSEEEEEEETTEEEEEECEEETTE-----EESCTTCTTSC
T ss_pred             HHhccCCCcCCCCCHHHHHHHHccCC-CCcEEEeecCCCCCCeEEEEEecCCceEEEEEEeCCe-----EEEeecccCcc
Confidence            34667899999999999999998754 5999999999889999999999999999999986533     87753     3


Q ss_pred             eecChHhhHHhhhcccCC---Cccccccccc
Q psy10852         81 TFSDLPSLLAFYKVHYLD---TSPLIKPATK  108 (563)
Q Consensus        81 ~F~sl~~Li~~y~~~~~~---~~~L~~p~~~  108 (563)
                      .|+||.+||+||+.+++.   ...|+.|+++
T Consensus        80 ~F~sl~~LV~~Y~~~~~~~~~~~llt~P~~r  110 (112)
T d2izva2          80 HSPDITGLLEHYKDPSACMFFEPLLSTPLIR  110 (112)
T ss_dssp             CBSSHHHHHHHTCCGGGCCTTSCCCCEECCC
T ss_pred             cCCCHHHHHHHHhcccccccCccccCCCCCC
Confidence            799999999999998764   2457778776

>d2cs0a1 d.93.1.1 (A:8-113) Hematopoietic SH2 domain containing protein HSH2D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Hematopoietic SH2 domain containing protein HSH2D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.7e-21  Score=160.48  Aligned_cols=99  Identities=22%  Similarity=0.514  Sum_probs=83.6

Q ss_pred             CCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeCC--ce
Q psy10852          4 TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD--KT   81 (563)
Q Consensus         4 ~~~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~--~~   81 (563)
                      .|++.-..+||||.|+|++||++|+++. +|+||||.|.+..+ |+||++.++.++||+|....++    .|.+.+  ..
T Consensus         2 ~~~~~~~~pWy~g~isR~eAe~lL~~~~-~G~FLvR~S~~~~~-y~Lsv~~~~~~~h~~I~~~~~g----~~~~~~~~~~   75 (106)
T d2cs0a1           2 QLAQDGVPEWFHGAISREDAENLLESQP-LGSFLIRVSHSHVG-YTLSYKAQSSCCHFMVKLLDDG----TFMIPGEKVA   75 (106)
T ss_dssp             CCCSSSCCSSBCSSCCHHHHHHHHHTSC-TTCEEEEECSSSSS-EEEEECCSSSCEEEEEEECTTS----CEECTTCSCC
T ss_pred             CccCCCCCCCccCCCCHHHHHHHHcCCC-CCcEEEEecCCCCC-EEEEEEecCCceeEEEEEcCCC----CEEEecCCcc
Confidence            4566667899999999999999998754 59999999987555 9999999999999999987655    366643  67


Q ss_pred             ecChHhhHHhhhcccCC--Cccccccccc
Q psy10852         82 FSDLPSLLAFYKVHYLD--TSPLIKPATK  108 (563)
Q Consensus        82 F~sl~~Li~~y~~~~~~--~~~L~~p~~~  108 (563)
                      |.||.+||+||+++++.  .+.|+.||.+
T Consensus        76 F~sl~eLV~~y~~~~~~~~~~~L~~P~~~  104 (106)
T d2cs0a1          76 HTSLDALVTFHQQKPIEPRRELLTQPCRQ  104 (106)
T ss_dssp             BSSHHHHHHHHTTSCCSSCCCCCCSBCCC
T ss_pred             CCCHHHHHHHHHHCCCCCccCcccCcCCC
Confidence            99999999999999874  5668889876

>d1qada_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phosphatidylinositol 3-kinase, p85-alpha subunit
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.85  E-value=8.6e-22  Score=162.55  Aligned_cols=88  Identities=30%  Similarity=0.492  Sum_probs=73.3

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeC-Cceec
Q psy10852          5 FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFS   83 (563)
Q Consensus         5 ~~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~   83 (563)
                      +-.++.++||||.|+|++||++|++.+ +|+||||.|+. +|.|+||++.+++|+||+|.+..++    .|.+. ...|+
T Consensus         3 ~p~~~~~~Wy~g~isR~eAe~lL~~~~-~G~FLVR~S~~-~~~y~Lsv~~~~~v~H~~I~~~~~g----~~~~~~~~~F~   76 (107)
T d1qada_           3 LPHHDEKTWNVGSSNRNKAENLLRGKR-DGTFLVRESSK-QGCYACSVVVDGEVKHCVINKTATG----YGFAEPYNLYS   76 (107)
T ss_dssp             CGGGSGGGTEEEECCHHHHHHHHTTCC-TTEEEEEEC----CCEEEEEEETTEEEEEEEEEETTE----EESSTTCCCBS
T ss_pred             CCccCCCcccCCCCCHHHHHHHHcCCC-CCcEEEEecCC-CCCEEEEEEecCCeEEEEEEECCCC----eEEcCCCCccC
Confidence            445777899999999999999998754 59999999965 8999999999999999999998765    24444 47899


Q ss_pred             ChHhhHHhhhcccCC
Q psy10852         84 DLPSLLAFYKVHYLD   98 (563)
Q Consensus        84 sl~~Li~~y~~~~~~   98 (563)
                      ||.+||+||+.+++.
T Consensus        77 sl~~LI~~Y~~~~l~   91 (107)
T d1qada_          77 SLKELVLHYQHTSLV   91 (107)
T ss_dssp             SHHHHHHHHHHSCGG
T ss_pred             CHHHHHHHHHhCccc
Confidence            999999999998764

>d1rpya_ d.93.1.1 (A:) Adaptor protein Aps {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Adaptor protein Aps
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=1.2e-22  Score=160.62  Aligned_cols=83  Identities=20%  Similarity=0.402  Sum_probs=69.7

Q ss_pred             CCCCCccccCCCHHHHHHHHcCC--CCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeCCceecCh
Q psy10852          8 HDRNSWYFGMMTRQEAQAILLSE--KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDL   85 (563)
Q Consensus         8 ~~~~~w~~g~i~r~~ae~~L~~~--~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~sl   85 (563)
                      +..++||||.|+|++||++|...  ..+|+||||.|++.+|.|+|||+.+++|+||+|.+..++    .|.+++..|+||
T Consensus         2 l~~~pWyhg~isR~~Ae~lL~~~~~~~dG~FLvR~S~~~~g~~~Lsv~~~~~v~h~~I~~~~~~----~~~~~~~~F~sl   77 (86)
T d1rpya_           2 LSDYPWFHGTLSRVKAAQLVLAGGPRSHGLFVIRQSETRPGECVLTFNFQGKAKHLRLSLNGHG----QCHVQHLWFQSV   77 (86)
T ss_dssp             GGGSTTBCTTCCHHHHHHHHHTTGGGGTTCEEEEECSSSTTCEEEEEEETTEEEEEEC----CC----CHHHHHHHHHHH
T ss_pred             CccCcccCCCCCHHHHHHHHHhCCCCCCceEEEEecCCCCCcEEEEEEECCceEEEEEEEcCCc----eEEeCCCeeCCH
Confidence            45679999999999999999874  357999999999889999999999999999999987655    255567899999


Q ss_pred             HhhHHhhhc
Q psy10852         86 PSLLAFYKV   94 (563)
Q Consensus        86 ~~Li~~y~~   94 (563)
                      .+||+||++
T Consensus        78 ~~LV~~y~t   86 (86)
T d1rpya_          78 FDMLRHFHT   86 (86)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHhhcC
Confidence            999999974

>d2c9wa2 d.93.1.1 (A:32-134) Suppressor of cytokine signaling 2, SOCS-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Suppressor of cytokine signaling 2, SOCS-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.4e-21  Score=160.34  Aligned_cols=85  Identities=25%  Similarity=0.442  Sum_probs=73.5

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeCC-----
Q psy10852          5 FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD-----   79 (563)
Q Consensus         5 ~~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~-----   79 (563)
                      +..++.++||||.|+|++||++|++.+ +|+||||.|++.+|.|+|||+.++.|+|++|.+.+++     |.++.     
T Consensus         9 ~~~l~~~~Wy~g~i~R~~Ae~~L~~~~-~GtFLVR~S~~~~~~~~LSv~~~~~v~H~~I~~~~~~-----~~~~~~~~~~   82 (103)
T d2c9wa2           9 LRELGQTGWYWGSMTVNEAKEKLKEAP-EGTFLIRDSSHSDYLLTISVKTSAGPTNLRIEYQDGK-----FRLDSIICVK   82 (103)
T ss_dssp             HHHHHHTSCBCTTCCHHHHHHHHTTSC-TTCEEEEECCSTTCSEEEEEEETTEEEEEEEEEETTE-----EEECTTTTTG
T ss_pred             HHHHhhCCCcCCCCCHHHHHHHhcCCC-CCceEEeccCCCCCCEEEEEEECCEEEEEEEEEcCCe-----EeeCCccccc
Confidence            345667899999999999999998654 5999999999989999999999999999999986543     77643     


Q ss_pred             ---ceecChHhhHHhhhcc
Q psy10852         80 ---KTFSDLPSLLAFYKVH   95 (563)
Q Consensus        80 ---~~F~sl~~Li~~y~~~   95 (563)
                         ..|+||.+||+||++.
T Consensus        83 ~~~~~F~sl~~LI~~y~~~  101 (103)
T d2c9wa2          83 SKLKQFDSVVHLIDYYVQM  101 (103)
T ss_dssp             GGCCCBSCHHHHHHHHHHH
T ss_pred             cCCCccCCHHHHHHHHHhh
Confidence               5799999999999875

>d2shpa3 d.93.1.1 (A:111-218) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine phoshatase shp-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1e-20  Score=156.71  Aligned_cols=90  Identities=31%  Similarity=0.616  Sum_probs=74.9

Q ss_pred             CccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEEC----------CeEEEEEEEEecCCCcceEEEe-CCc
Q psy10852         12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKEN----------NKVSHYIINKITNTEQQTCYKI-GDK   80 (563)
Q Consensus        12 ~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~----------~~v~h~~I~~~~~~~~~~~~~~-~~~   80 (563)
                      .||||.|+|++||++|++...+|+||||+|++.+|.|+|||+++          +.++|+.|.....+     |.+ ++.
T Consensus         1 rWyhG~i~R~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~~~~~~~~~~~~~h~~i~~~~~~-----~~~~~~~   75 (108)
T d2shpa3           1 RWFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVMIRCQELK-----YDVGGGE   75 (108)
T ss_dssp             TTBCCSCCHHHHHHHHHHTCCTTEEEEEECSSSTTCEEEEEEECC-----CCCCCEEEEEEEEEETTE-----EESSSSC
T ss_pred             CCCcCCCCHHHHHHHHhhcCCCCeEEEEecCCCCCCeEEEEEecCccccccccccceeeEEEEeCCCc-----eEeCCCc
Confidence            49999999999999998655679999999998899999999974          45899999876544     666 458


Q ss_pred             eecChHhhHHhhhcccCC-----Cccccccc
Q psy10852         81 TFSDLPSLLAFYKVHYLD-----TSPLIKPA  106 (563)
Q Consensus        81 ~F~sl~~Li~~y~~~~~~-----~~~L~~p~  106 (563)
                      .|+||.+||+||+++++.     .+.|++|+
T Consensus        76 ~F~sl~~LV~~y~~~~l~~~~g~~~~L~~Pv  106 (108)
T d2shpa3          76 RFDSLTDLVEHYKKNPMVETLGTVLQLKQPL  106 (108)
T ss_dssp             CBSSHHHHHHHHHHSCCBCTTSCBCCCCEEC
T ss_pred             ccCCHHHHHHHHhhCCCCCCCCceEEcCCCC
Confidence            999999999999998763     23566665

>d1fu6a_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phosphatidylinositol 3-kinase, p85-alpha subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=1.3e-21  Score=162.89  Aligned_cols=96  Identities=27%  Similarity=0.512  Sum_probs=80.0

Q ss_pred             CCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCC-CcceEEEEEECCeEEEEEEEEecCCCcceEEEeC-CceecC
Q psy10852          7 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTI-LGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSD   84 (563)
Q Consensus         7 ~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~-~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~s   84 (563)
                      .++.++||||.|+|++||++|++.+ +|+||||+|++. .+.|+||++.++.++||+|.+.+++     |.+. ...|.|
T Consensus         7 ~l~~~~WyhG~isR~eAe~lL~~~~-~G~FLVR~S~~~~~~~~~ls~~~~~~~~H~~I~~~~~~-----~~~~~~~~F~s   80 (111)
T d1fu6a_           7 SLQDAEWYWGDISREEVNEKLRDTA-DGTFLVRDASTKMHGDYTLTLRKGGNNKSIKIFHRDGK-----YGFSDPLTFNS   80 (111)
T ss_dssp             CCSCCSSCCSSCCSHHHHHHSSSCS-SCCCCCBSSCCSSSCCSBCEEEETTEEEECCCCCTTTC-----CCTTTTSCCCC
T ss_pred             ccCcCcCCCCCCCHHHHHHHhCcCC-CCEEEEEeccCCCCccEEEEEecCCceEEEEEEEcCCe-----EEECCCcccCC
Confidence            4778999999999999999998755 599999998765 4679999999999999999875433     6665 478999


Q ss_pred             hHhhHHhhhcccCC------Cccccccccc
Q psy10852         85 LPSLLAFYKVHYLD------TSPLIKPATK  108 (563)
Q Consensus        85 l~~Li~~y~~~~~~------~~~L~~p~~~  108 (563)
                      |.+||+||+++++.      .+.|+.||.+
T Consensus        81 l~~LV~~y~~~~l~~~~~~l~~~L~~Pv~r  110 (111)
T d1fu6a_          81 VVELINHYRNESLAQYNPKLDVKLLYPVSK  110 (111)
T ss_dssp             TTHHHHHHHTTCSTTTCSSCCCCSCCCCCC
T ss_pred             HHHHHHHHhhCcCCccCCCCccccCccccC
Confidence            99999999998763      3457777764

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=7.8e-20  Score=147.79  Aligned_cols=89  Identities=24%  Similarity=0.350  Sum_probs=70.8

Q ss_pred             cCCcEEEEcCCCeEeccCCcccccccccCCCCCCCCCCCCCCCcccccccccccccceEEeecCCCCCCCCCCeeccCCC
Q psy10852        426 ISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGD  505 (563)
Q Consensus       426 ~~g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~eL~~~~gd  505 (563)
                      .+|+.|+||++||+++........             +            ......+++|+|+|.  +++++||+|++||
T Consensus         5 ~~G~~G~~P~~yv~~~~~~~~~~~-------------~------------~~~~~~~~~Alydy~--a~~~~ELsf~~Gd   57 (98)
T d1udla_           5 SSGQKGWFPASHVKLLGPSSERAT-------------P------------AFHPVCQVIAMYDYA--ANNEDELSFSKGQ   57 (98)
T ss_dssp             CSSCCSSCCCCCCCCCSCCCCCCC-------------S------------CCCCSEEEEESSCCC--CSSTTSCCCCTTC
T ss_pred             CCCceeeEcccceeECCCcccccC-------------C------------CCCCccEEEEccCCC--CCCCCEeeEcCCC
Confidence            378999999999987765411110             0            001123688999998  5568999999999


Q ss_pred             EEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCCC
Q psy10852        506 IIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNE  541 (563)
Q Consensus       506 ~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~~  541 (563)
                      +|.|+++.++|||+|+++|++||||++||+++++..
T Consensus        58 ~i~Vl~~~~~gWw~g~~~g~~G~~P~nyVe~~~~~~   93 (98)
T d1udla_          58 LINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTDSS   93 (98)
T ss_dssp             EEEECBCCSSSEEBCBSSSCBCCEETTSEEECCCCS
T ss_pred             EEEEeEecCCCeEEEEECCeEEEEchHHEEECCCCC
Confidence            999999999999999999999999999999998653

>d1rjaa_ d.93.1.1 (A:) Tyrosine-protein kinase 6 (Breast tumor kinase, Brk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase 6 (Breast tumor kinase, Brk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=5.5e-18  Score=137.28  Aligned_cols=94  Identities=32%  Similarity=0.576  Sum_probs=82.5

Q ss_pred             CCccccccCHHHHHHHHhcC-CCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeC-CcccCChhhH
Q psy10852        286 NSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDLPSL  363 (563)
Q Consensus       286 ~~w~~g~~sr~~A~~~l~~~-~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~-~~~f~sl~~l  363 (563)
                      ++||+|.|+|++|+.+|... ..+|+||||.|.+.+|.|+||++.+++++|++|....++    +|.++ ...|+|+.+|
T Consensus         2 epWy~g~isR~~Ae~~L~~~~~~~G~FLvR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g----~~~l~~~~~F~sl~~L   77 (100)
T d1rjaa_           2 EPWFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGG----RLHLNEAVSFLSLPEL   77 (100)
T ss_dssp             CCCBCTTCCHHHHHHHHSSTTCSSCCEEEEECSSSSSCEEEEECTTSSCEEEEEEECSSS----CEEEETTEEESSHHHH
T ss_pred             CCCcCCCCCHHHHHHHHhccCCCCCeEEeecCCCCCCCEEEEEEcCCCceEEEEEECCCC----CEEecCCCccCCHHHH
Confidence            58999999999999999864 578999999999999999999999999999999986544    27775 5789999999


Q ss_pred             HhhhhcccCCC-Ccccccccc
Q psy10852        364 LAFYKVHYLDT-SPLIKPATK  383 (563)
Q Consensus       364 v~~y~~~~~~~-~~l~~P~~~  383 (563)
                      |+||+.+++.. +.|..|+++
T Consensus        78 V~~y~~~~~~~~~~L~~Pc~~   98 (100)
T d1rjaa_          78 VNYHRAQSLSHGLRLAAPCRK   98 (100)
T ss_dssp             HHHHHHCCTTSSSCCCSBCCC
T ss_pred             HHHHhhCCCCCccCcCeecCC
Confidence            99999888764 678899876

>d2fcia1 d.93.1.1 (A:1-105) Phospholipase C-gamma-1 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phospholipase C-gamma-1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.72  E-value=6.8e-18  Score=137.64  Aligned_cols=97  Identities=28%  Similarity=0.547  Sum_probs=83.7

Q ss_pred             CCCCCCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeCCcccCCh
Q psy10852        281 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDL  360 (563)
Q Consensus       281 ~~~~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~~~~f~sl  360 (563)
                      ..++.++||+|.|+|++|+.+|.....+|+||||.|. .++.|+||++.+++++|++|...+..     |.+++..|+++
T Consensus         4 ~~he~~~Wy~g~i~R~eAe~lL~~~~~~G~FLVR~S~-~~~~yvLSv~~~~~v~H~~I~~~~~~-----~~~~~~~F~sl   77 (105)
T d2fcia1           4 GIHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRN-EPNSYAISFRAEGKIKHCRVQQEGQT-----VMLGNSEFDSL   77 (105)
T ss_dssp             CTTSSSCCCCSSSCSHHHHHHHHHSSSSCCEEEEECS-STTCEEEEEEETTEECCCEEBCCSSC-----EECSSSEESTT
T ss_pred             cccccCCCccCCCCHHHHHHHHHhCCCCCeEEEEecC-CCCCEEEEEEeccccEEEEEEecCCe-----EecCCcccCCH
Confidence            4566779999999999999999886667999999995 58999999999999999999865332     88888999999


Q ss_pred             hhHHhhhhcccCCC-Ccccccccc
Q psy10852        361 PSLLAFYKVHYLDT-SPLIKPATK  383 (563)
Q Consensus       361 ~~lv~~y~~~~~~~-~~l~~P~~~  383 (563)
                      .+||+||+.+++.. +.|..|+++
T Consensus        78 ~~LV~~y~~~~~~~~~~L~~P~~~  101 (105)
T d2fcia1          78 VDLISYYEKHPLYRKMKLRYPINE  101 (105)
T ss_dssp             HHHHHHHHHSCCSTTCSSCCCCCC
T ss_pred             HHHHHHHhhCCCCCccCCCCCCCC
Confidence            99999999887753 668888865

>d1xa6a2 d.93.1.1 (A:21-161) Beta-chimaerin, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Beta-chimaerin, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=4.6e-18  Score=145.29  Aligned_cols=83  Identities=23%  Similarity=0.442  Sum_probs=69.8

Q ss_pred             CCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeCCceecCh
Q psy10852          6 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDL   85 (563)
Q Consensus         6 ~~~~~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~sl   85 (563)
                      .++..++||||.|+|++||++|.. . +|+||||+|++.+|.|+|||+.+++|+||+|.+. ++     |++.+..|+||
T Consensus        30 ~~~~~~~wyhG~isR~eAe~lL~~-~-dGsFLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~-g~-----~~~~~~~F~sl  101 (141)
T d1xa6a2          30 RPKYYGREFHGIISREQADELLGG-V-EGAYILRESQRQPGCYTLALRFGNQTLNYRLFHD-GK-----HFVGEKRFESI  101 (141)
T ss_dssp             SSCSSCSSEEEECCHHHHHHHHCS-C-TTBEEEEECSSSTTCEEEEEEETTEEEECCCEES-SS-----EECSSSCCCCS
T ss_pred             CcccccceeeccCCHHHHHHHHcC-C-CCeEEEEecCCCCCCEEEEEEECCEEEEEEEEEC-CC-----EEECCCeECCH
Confidence            456667899999999999999964 3 5999999999888999999999999999999863 22     66777899999


Q ss_pred             HhhHH-----hhhccc
Q psy10852         86 PSLLA-----FYKVHY   96 (563)
Q Consensus        86 ~~Li~-----~y~~~~   96 (563)
                      .+||+     +|+...
T Consensus       102 ~eLV~dgLv~~~~~~~  117 (141)
T d1xa6a2         102 HDLVTDGLITLYIETK  117 (141)
T ss_dssp             SHHHHHHHHHHHHHHS
T ss_pred             HHHHhhhhhhhhcccc
Confidence            99885     566543

>d1nrva_ d.93.1.1 (A:) Growth factor receptor-bound protein 10, GRB10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 10, GRB10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.9e-17  Score=134.54  Aligned_cols=100  Identities=26%  Similarity=0.498  Sum_probs=80.9

Q ss_pred             CCCCCccccccCHHHHHHHHhcC-CCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeCC--cccCC
Q psy10852        283 HDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD--KTFSD  359 (563)
Q Consensus       283 ~~~~~w~~g~~sr~~A~~~l~~~-~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~~--~~f~s  359 (563)
                      |+.++||||.|+|++|+++|... ..+|+||||.|.+.+|.|+||++.+++++|++|....++... .|.+.+  ..|+|
T Consensus         2 h~~~~Wyhg~isR~~Ae~lL~~~g~~dG~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~~-~~~~~~~~~~F~s   80 (105)
T d1nrva_           2 HRTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEDDGQT-FFSLDDGNTKFSD   80 (105)
T ss_dssp             CTTSTTBCTTCCHHHHHHHHHHTTCCTTEEEEEECSSCTTCEEEEEEETTEEEEEEEEEC-----C-CEESSTTSSCBSS
T ss_pred             CccCcccCCCCCHHHHHHHHhhcCCCCceEEEEeCCCCCCCEEEEEEECCceeEEEEEEecCCCeE-EEEECCCCcccCC
Confidence            45679999999999999999864 668999999999999999999999999999999886543222 256643  68999


Q ss_pred             hhhHHhhhhcccCC-CCcccccccc
Q psy10852        360 LPSLLAFYKVHYLD-TSPLIKPATK  383 (563)
Q Consensus       360 l~~lv~~y~~~~~~-~~~l~~P~~~  383 (563)
                      +.+||+||+.+++. .++|..||++
T Consensus        81 l~~LV~~y~~~~~~L~~~L~~Pc~r  105 (105)
T d1nrva_          81 LIQLVDFYQLNKGVLPCKLKHHCIR  105 (105)
T ss_dssp             HHHHHHHHTTCCTTSSSCCCEECCC
T ss_pred             HHHHHHHhccCcCCCCccCCcCCCC
Confidence            99999999988754 3678888864

>d1jwoa_ d.93.1.1 (A:) Csk homologous kinase Chk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Csk homologous kinase Chk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.7e-17  Score=132.40  Aligned_cols=93  Identities=30%  Similarity=0.516  Sum_probs=79.9

Q ss_pred             CCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeC-CcccCChhhH
Q psy10852        285 RNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDLPSL  363 (563)
Q Consensus       285 ~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~-~~~f~sl~~l  363 (563)
                      ..+||||.|+|++|+.+|.+ ..+|+||||.|++.+|.|+||++.+++++|++|...+++     |++. ...|+|+.+|
T Consensus         3 ~~PWy~g~isR~eAe~~L~~-~~~G~FLVR~S~~~~g~~vLSv~~~~~v~H~~I~~~~~~-----~~~~~~~~F~sl~~L   76 (97)
T d1jwoa_           3 LMPWFHGKISGQEAVQQLQP-PEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGH-----LTIDEAVFFCNLMDM   76 (97)
T ss_dssp             TCTTEEESCCHHHHHHHTCS-CCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEESSSE-----ESSTTSCCBSCHHHH
T ss_pred             cCCccCCCCCHHHHHHHhcC-CCCCeEEEEecCCCCccEEEEEEecCceEEEEEEEcCCc-----EEecCCcccCCHHHH
Confidence            35999999999999999975 457999999999999999999999999999999875432     7775 5899999999


Q ss_pred             HhhhhcccCCC-Ccccccccc
Q psy10852        364 LAFYKVHYLDT-SPLIKPATK  383 (563)
Q Consensus       364 v~~y~~~~~~~-~~l~~P~~~  383 (563)
                      |+||+.+.... +.|..|+++
T Consensus        77 I~~y~~~~~~L~~~L~~P~~k   97 (97)
T d1jwoa_          77 VEHYSKDKGAICTKLVRPKRK   97 (97)
T ss_dssp             HHHHHHCCTTSSSCCCCBCCC
T ss_pred             HHHHhhCCCCCCccCCccCcC
Confidence            99999887654 568888864

>d1jyra_ d.93.1.1 (A:) Growth factor receptor-bound protein 2 (GRB2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 2 (GRB2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.1e-17  Score=131.41  Aligned_cols=86  Identities=27%  Similarity=0.533  Sum_probs=77.1

Q ss_pred             CCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeCCcccCChhhHH
Q psy10852        285 RNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLL  364 (563)
Q Consensus       285 ~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~~~~f~sl~~lv  364 (563)
                      +.+||||.|+|++|+.+|.....+|+||||.|.+.+|.|+|+++.+++++|++|...+++    .|.++...|+|+.+||
T Consensus         2 s~pWy~g~isR~~Ae~lL~~~~~~G~FLvR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g----~~~~~~~~F~sl~~LV   77 (96)
T d1jyra_           2 SMAWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAG----KYFLWVVKFNSLNELV   77 (96)
T ss_dssp             CCTTBCCSCCHHHHHHHHHTCCSTTBEEEEECSSSTTCEEEEEEETTEEEEEECEECTTS----CEESSSCEESSHHHHH
T ss_pred             CCCccCCCCCHHHHHHHHhhCCCCCeEEEEecCCCCCCEEEEEEeCCceEEEEEEECCCC----eEEeCCccCCCHHHHH
Confidence            359999999999999999776678999999999999999999999999999999986654    2778888999999999


Q ss_pred             hhhhcccCCC
Q psy10852        365 AFYKVHYLDT  374 (563)
Q Consensus       365 ~~y~~~~~~~  374 (563)
                      +||+.+++..
T Consensus        78 ~~y~~~~l~~   87 (96)
T d1jyra_          78 DYHRSTSVSR   87 (96)
T ss_dssp             HHTTSSCSCS
T ss_pred             HHHhhCCCCC
Confidence            9999988764

>d2oq1a1 d.93.1.1 (A:5-134) Tyrosine-protein kinase zap-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase zap-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=5.3e-17  Score=137.45  Aligned_cols=99  Identities=28%  Similarity=0.482  Sum_probs=84.7

Q ss_pred             CCCCCCCccccccCHHHHHHHHhcC-CCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeC-CcccC
Q psy10852        281 DPHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFS  358 (563)
Q Consensus       281 ~~~~~~~w~~g~~sr~~A~~~l~~~-~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~-~~~f~  358 (563)
                      |+.+..+||||.|+|++|+.+|... ..+|+||||.|.+.+|.|+||++.+++++||+|....++    .|.+. ...|+
T Consensus         1 d~~~~~pWy~g~i~R~~Ae~~L~~~g~~~G~FLVR~S~~~~g~yvLSv~~~~~v~H~~I~~~~~g----~~~l~~~~~F~   76 (130)
T d2oq1a1           1 DPAAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNG----TYAIAGGKAHC   76 (130)
T ss_dssp             CTTTTCTTBCBSCCHHHHHHHHHHTTCCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTS----CEEETTSCCBS
T ss_pred             CCccCCCCccCCCCHHHHHHHHHhcCCCCceEEEEecCCCCccEEEEEeeCCceEEEEEEEcCCC----ceeccCCCCcC
Confidence            3455669999999999999999864 678999999999999999999999999999999876543    27886 47899


Q ss_pred             ChhhHHhhhhcccCCC-Ccccccccc
Q psy10852        359 DLPSLLAFYKVHYLDT-SPLIKPATK  383 (563)
Q Consensus       359 sl~~lv~~y~~~~~~~-~~l~~P~~~  383 (563)
                      |+.+||+||+.++... ++|..|+++
T Consensus        77 sl~~Lv~~Y~~~~~gL~~~L~~P~~r  102 (130)
T d2oq1a1          77 GPAELCEFYSRDPDGLPCNLRKPCNR  102 (130)
T ss_dssp             SHHHHHHHHHHCCTTSSSCCCSBCCC
T ss_pred             CHHHHHHHHhhCCCCCCccCCccCCC
Confidence            9999999999887654 568888865

>d1k9aa2 d.93.1.1 (A:77-177) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=6.6e-17  Score=130.99  Aligned_cols=92  Identities=34%  Similarity=0.603  Sum_probs=80.5

Q ss_pred             CCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeC-CcccCChhhHH
Q psy10852        286 NSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDLPSLL  364 (563)
Q Consensus       286 ~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~-~~~f~sl~~lv  364 (563)
                      .+||||.++|++|+.+|.+. .+|+||||.|.+.+|.|+||++.+++++|++|...+.+     |++. ...|+|+.+||
T Consensus         4 ~PWy~g~isR~~Ae~lL~~~-~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~-----~~~~~~~~F~sl~~LV   77 (101)
T d1k9aa2           4 MPWFHGKITREQAERLLYPP-ETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMYHASK-----LSIDEEVYFENLMQLV   77 (101)
T ss_dssp             CTTBCTTCCHHHHHHHTCSC-CTTEEEEEECSSSTTSEEEEEECSSSEEEEEEEEETTE-----EESSSSSCBSSHHHHH
T ss_pred             CCccCCCCCHHHHHHHHcCC-CCCCEEEeccCCCCCCEEEEEEeCCccEEEEEEEcCCC-----ceecCCcccCCHHHHH
Confidence            48999999999999999765 46999999999999999999999999999999886543     7886 57899999999


Q ss_pred             hhhhcccCCC-Ccccccccc
Q psy10852        365 AFYKVHYLDT-SPLIKPATK  383 (563)
Q Consensus       365 ~~y~~~~~~~-~~l~~P~~~  383 (563)
                      +||+.++... +.|..|+++
T Consensus        78 ~~y~~~~~gl~~~L~~P~~~   97 (101)
T d1k9aa2          78 EHYTTDADGLCTRLIKPKVM   97 (101)
T ss_dssp             HHHHHCCTTSSSCCCEECCC
T ss_pred             HHHhhCCCCCceeCCccccC
Confidence            9999887653 568888865

>d1a81a1 d.93.1.1 (A:9-137) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Syk tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.3e-16  Score=134.61  Aligned_cols=95  Identities=28%  Similarity=0.487  Sum_probs=81.7

Q ss_pred             CCCccccccCHHHHHHHHhcC-CCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeC-CcccCChhh
Q psy10852        285 RNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDLPS  362 (563)
Q Consensus       285 ~~~w~~g~~sr~~A~~~l~~~-~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~-~~~f~sl~~  362 (563)
                      ..+||||.|+|++|+.+|... ..+|+||||.|.+.+|.|+||++.++.++|++|....++    .|++. +..|+||.+
T Consensus         4 ~~PWyhg~isR~~Ae~lL~~~g~~dG~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g----~~~i~~~~~F~sl~e   79 (129)
T d1a81a1           4 HLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERELNG----TYAIAGGRTHASPAD   79 (129)
T ss_dssp             SSTTBCSSCCHHHHHHHHHHTTCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTS----CEEETTSCCBSSHHH
T ss_pred             CCCcccCCCCHHHHHHHHHhcCCCCccEEEEccCCCCcceEEEeeecccceEEEEEEcCCC----CeeecCCcccCCHHH
Confidence            458999999999999999864 577999999999999999999999999999999876544    27775 478999999


Q ss_pred             HHhhhhcccCCC-Ccccccccc
Q psy10852        363 LLAFYKVHYLDT-SPLIKPATK  383 (563)
Q Consensus       363 lv~~y~~~~~~~-~~l~~P~~~  383 (563)
                      ||+||+.++... +.|..|+++
T Consensus        80 LV~~Y~~~~~gl~~~L~~P~~~  101 (129)
T d1a81a1          80 LCHYHSQESDGLVCLLKKPFNR  101 (129)
T ss_dssp             HHHHHTTCCTTSSSCCCEECCC
T ss_pred             HHHHHhhCCCCCcccCCCCCCC
Confidence            999999887654 567888754

>d1i3za_ d.93.1.1 (A:) Ews/fli1 activated transcript 2, Eat2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Ews/fli1 activated transcript 2, Eat2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=1.2e-16  Score=130.19  Aligned_cols=93  Identities=30%  Similarity=0.499  Sum_probs=78.3

Q ss_pred             CCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeCC------cccCC
Q psy10852        286 NSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD------KTFSD  359 (563)
Q Consensus       286 ~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~~------~~f~s  359 (563)
                      .+||||.|+|++|+.+|.....+|+||||.|++.+|.|+||++.++.++|++|.+.+++    .|.+..      ..|+|
T Consensus         3 ~PWy~g~isR~~AE~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g----~~~~~~~~~~~~~~F~s   78 (103)
T d1i3za_           3 LPYYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHG----YYRIETDAHTPRTIFPN   78 (103)
T ss_dssp             CTTEESSCCHHHHHHHHHTTCSTTEEEEEECSSSTTCEEEEEECSSSEEEEEEEECTTS----CEEECBCTTSCCCEESS
T ss_pred             CCcccCCCCHHHHHHHHHhCCCCCeEEEEecCCCCCCEEEEEEeCCeEEEEEeEEcCCC----cEEEeccCCcCccccCC
Confidence            38999999999999999876678999999999999999999999999999999876544    266642      46999


Q ss_pred             hhhHHhhhhcccCCC-Cccccccc
Q psy10852        360 LPSLLAFYKVHYLDT-SPLIKPAT  382 (563)
Q Consensus       360 l~~lv~~y~~~~~~~-~~l~~P~~  382 (563)
                      +.+||+||+.++... +.|..|+.
T Consensus        79 l~~LV~~y~~~~~gl~~~L~~P~~  102 (103)
T d1i3za_          79 LQELVSKYGKPGQGLVVHLSNPIM  102 (103)
T ss_dssp             SHHHHHHTTSSSSSSSSCCCEECC
T ss_pred             HHHHHHHhhhCCCCCeEeCCcccc
Confidence            999999999877543 45777764

>d2qmsa1 d.93.1.1 (A:420-532) Growth factor receptor-bound protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.8e-16  Score=131.23  Aligned_cols=100  Identities=27%  Similarity=0.443  Sum_probs=83.4

Q ss_pred             CCCCCccccccCHHHHHHHHhc-CCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeCC--cccCC
Q psy10852        283 HDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD--KTFSD  359 (563)
Q Consensus       283 ~~~~~w~~g~~sr~~A~~~l~~-~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~~--~~f~s  359 (563)
                      |..++||||.|+|++|+++|.. +..+|+||||.|.+.+|.|+||++.+++++|++|...+.+. ...|.+.+  ..|+|
T Consensus         7 h~~~~Wy~g~isR~~Ae~lL~~~g~~dG~FLvR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~-~~~~~~~~~~~~F~s   85 (113)
T d2qmsa1           7 HRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEG-RLYFSMDDGQTRFTD   85 (113)
T ss_dssp             TTCCTTEEEEBCHHHHHHHHHHTTCCTTEEEEEECSSCTTCEEEEEEETTEEEEEEEEEEESSS-CEEEESSTTSSCBSS
T ss_pred             hcCCCccCCCCCHHHHHHHHhccCCCCccEEEEeccCCCCCEEEEEEeCCeEEEEEEEEeCCCC-eEEEEecCCCcccCC
Confidence            4566899999999999999986 46789999999999999999999999999999998765442 22255543  57999


Q ss_pred             hhhHHhhhhcccCCC-Ccccccccc
Q psy10852        360 LPSLLAFYKVHYLDT-SPLIKPATK  383 (563)
Q Consensus       360 l~~lv~~y~~~~~~~-~~l~~P~~~  383 (563)
                      +.+||+||+.+.+.. +.|..|+++
T Consensus        86 l~~LI~~y~~~~~~L~~~L~~pc~r  110 (113)
T d2qmsa1          86 LLQLVEFHQLNRGILPCLLRHCCTR  110 (113)
T ss_dssp             HHHHHHHHTTCCTTSSSCCCEECCS
T ss_pred             HHHHHHHhccCCCCCccccCCCCcC
Confidence            999999999887654 568888876

>d1opka2 d.93.1.1 (A:140-240) Abl tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Abl tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=1.1e-16  Score=130.08  Aligned_cols=94  Identities=30%  Similarity=0.483  Sum_probs=81.0

Q ss_pred             CCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeC-CcccCChhhH
Q psy10852        285 RNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDLPSL  363 (563)
Q Consensus       285 ~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~-~~~f~sl~~l  363 (563)
                      ..+||||.|+|++|+.+|.+. .+|+||||.|.+.++.|+||++.++.++|++|....++    .|.+. +..|+|+.+|
T Consensus         4 ~~~Wy~g~isR~eAe~lL~~~-~~G~FLVR~S~~~~~~~~LSv~~~~~v~H~~I~~~~~g----~~~~~~~~~F~sl~~L   78 (101)
T d1opka2           4 KHSWYHGPVSRNAAEYLLSSG-INGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDG----KLYVSSESRFNTLAEL   78 (101)
T ss_dssp             GSTTEEEECCHHHHHHHGGGC-CTTEEEEEECSSSTTCEEEEEEETTEEEEEECEECTTS----CEESSTTSCBSSHHHH
T ss_pred             cCcccCCCCCHHHHHHHhcCC-CCCeEEEEecCCCCCCEEEEEEcCcceEEEEeEECCCC----CEEeCCCcccCCHHHH
Confidence            458999999999999999875 57999999999999999999999999999999887654    26665 5789999999


Q ss_pred             HhhhhcccCCC-Ccccccccc
Q psy10852        364 LAFYKVHYLDT-SPLIKPATK  383 (563)
Q Consensus       364 v~~y~~~~~~~-~~l~~P~~~  383 (563)
                      |+||+.++... +.|..|+|+
T Consensus        79 I~~y~~~~~~l~~~L~~P~pr   99 (101)
T d1opka2          79 VHHHSTVADGLITTLHYPAPK   99 (101)
T ss_dssp             HHHHTTCCTTSSSCCCEECCC
T ss_pred             HHHHhhCCCCCceECCCccCC
Confidence            99999887654 568888875

>d2shpa2 d.93.1.1 (A:2-110) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine phoshatase shp-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.2e-16  Score=131.40  Aligned_cols=93  Identities=29%  Similarity=0.517  Sum_probs=78.5

Q ss_pred             CCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEe-CCcccCChhhH
Q psy10852        285 RNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKI-GDKTFSDLPSL  363 (563)
Q Consensus       285 ~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i-~~~~f~sl~~l  363 (563)
                      +..||||.|+|.+|+.+|.....+|+||||.|.+.+|.|+||++.+++++|++|...++.     |++ +...|+|+.+|
T Consensus         2 ~~~Wy~g~isR~~Ae~lL~~~~~~G~FLvR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~-----~~~~~~~~F~sl~~L   76 (109)
T d2shpa2           2 SRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTGDY-----YDLYGGEKFATLAEL   76 (109)
T ss_dssp             CSTTBCSSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEECSSSC-----EEETTSCEESSHHHH
T ss_pred             CCccccCCCCHHHHHHHHhhCCCCCeEEEEecCCCCCCEEEEEEeCCcEEEEEEEEcCCe-----EEEcCCcccCCHHHH
Confidence            358999999999999999775567999999999999999999999999999999876544     777 56899999999


Q ss_pred             HhhhhcccCCC-------Cccccccc
Q psy10852        364 LAFYKVHYLDT-------SPLIKPAT  382 (563)
Q Consensus       364 v~~y~~~~~~~-------~~l~~P~~  382 (563)
                      |+||+.+.+..       +.|..|++
T Consensus        77 V~~y~~~~~~~~~~~~~~~~L~~P~~  102 (109)
T d2shpa2          77 VQYYMEHHGQLKEKNGDVIELKYPLN  102 (109)
T ss_dssp             HHHHHTCTTCSBSSSSCBCCCCEECC
T ss_pred             HHHHHHCCCCcccCCCCeeeccccCC
Confidence            99999876532       34566654

>d1lkka_ d.93.1.1 (A:) p56-lck tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: p56-lck tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.8e-16  Score=129.80  Aligned_cols=95  Identities=28%  Similarity=0.566  Sum_probs=79.7

Q ss_pred             CCCccccccCHHHHHHHHhcC-CCCCcEEEEecCCCCcceEEEEEeCC-----eeEEEEEeeecCCCcceeEEeC-Cccc
Q psy10852        285 RNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENN-----KVSHYIINKITNTEQQTCYKIG-DKTF  357 (563)
Q Consensus       285 ~~~w~~g~~sr~~A~~~l~~~-~~~G~FlvR~S~~~~g~~~ls~~~~~-----~v~h~~I~~~~~~~~~~~~~i~-~~~f  357 (563)
                      .++||+|+|+|++|+++|... ..+|+||||.|++.+|.|+|+++..+     .|+|+.|...+++    +|++. ...|
T Consensus         3 ~~pWy~g~isR~eAe~~L~~~~~~~GtFLVR~S~~~~g~~~lsv~~~~~~~~~~v~h~~i~~~~~~----~~~~~~~~~F   78 (105)
T d1lkka_           3 PEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNG----GFYISPRITF   78 (105)
T ss_dssp             CCTTBCTTCCHHHHHHHHTSTTCCTTCEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEEECTTS----CEESSTTSCB
T ss_pred             cCCccCCCCCHHHHHHHHHhcCCCCCcEEEEccCCCCCCEEEEEEEcccCCCccEEEEEEEEcCCC----CEEecCCccc
Confidence            458999999999999999764 67799999999999999999998643     4889999887554    37775 4789


Q ss_pred             CChhhHHhhhhcccCCC-Ccccccccc
Q psy10852        358 SDLPSLLAFYKVHYLDT-SPLIKPATK  383 (563)
Q Consensus       358 ~sl~~lv~~y~~~~~~~-~~l~~P~~~  383 (563)
                      +|+.+||+||+.+++.. ++|..|||.
T Consensus        79 ~sl~~LV~~y~~~~~gL~~~L~~Pcp~  105 (105)
T d1lkka_          79 PGLHELVRHYTNASDGLCTRLSRPCQT  105 (105)
T ss_dssp             SSHHHHHHHHHHCCTTSSSCCCSBCCC
T ss_pred             CCHHHHHHHHhhCCCCCCccCCCcCCC
Confidence            99999999999988754 568899863

>d1d4ta_ d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: The Xlp protein Sap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.8e-16  Score=129.85  Aligned_cols=96  Identities=24%  Similarity=0.483  Sum_probs=80.5

Q ss_pred             CCCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEe------CCccc
Q psy10852        284 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKI------GDKTF  357 (563)
Q Consensus       284 ~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i------~~~~f  357 (563)
                      +..+||||.|+|++|+.+|.....+|+||||.|.+.+|.|+|+++.++.++|++|.....+    .+.+      +...|
T Consensus         2 e~~pwyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~~~Lsv~~~~~v~H~~I~~~~~~----~~~~~~~~~~~~~~F   77 (104)
T d1d4ta_           2 DAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETG----SWSAETAPGVHKRYF   77 (104)
T ss_dssp             TTCTTBCCSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTS----CEEECBCTTSCCCCB
T ss_pred             CcCCccccCCCHHHHHHHHhhCCCCCeEEEEecCCCCCCEEEEEecCCCceEEEEEEcCCC----cEEEeeccCCCCccc
Confidence            3469999999999999999765567999999999999999999999999999999987654    1433      23679


Q ss_pred             CChhhHHhhhhcccCCC-Ccccccccc
Q psy10852        358 SDLPSLLAFYKVHYLDT-SPLIKPATK  383 (563)
Q Consensus       358 ~sl~~lv~~y~~~~~~~-~~l~~P~~~  383 (563)
                      +|+.+||+||+++.... ++|..|+++
T Consensus        78 ~sl~~Li~~y~~~~~gl~~~L~~P~~r  104 (104)
T d1d4ta_          78 RKIKNLISAFQKPDQGIVIPLQYPVEK  104 (104)
T ss_dssp             SSHHHHHHHHTSSSSSSSSCCCEECCC
T ss_pred             CCHHHHHHHHhhCCCCCcEeCCccccC
Confidence            99999999999877653 578888764

>d2oq1a2 d.93.1.1 (A:135-258) Tyrosine-protein kinase zap-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase zap-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2e-16  Score=132.78  Aligned_cols=96  Identities=29%  Similarity=0.478  Sum_probs=81.6

Q ss_pred             CCCCCccccccCHHHHHHHHhcC-CCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeC-CcccCCh
Q psy10852        283 HDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDL  360 (563)
Q Consensus       283 ~~~~~w~~g~~sr~~A~~~l~~~-~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~-~~~f~sl  360 (563)
                      ++..+||||.|+|++|+.+|... ..+|+||||.|.+ ++.|+||++.+++++|++|.....+    .|.++ ...|+|+
T Consensus        26 ~e~~pWyhg~isR~eAe~lL~~~~~~dGtFLVR~S~~-~g~yvLSv~~~~~v~H~~I~~~~~g----~~~l~~~~~F~sl  100 (124)
T d2oq1a2          26 HERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRKE-QGTYALSLIYGKTVYHYLISQDKAG----KYCIPEGTKFDTL  100 (124)
T ss_dssp             GGGSTTBCSSCCHHHHHHHHHSSCCCTTEEEEEECSS-TTEEEEEEEETTEEEEEEEEECTTS----CEESTTSCCBSSH
T ss_pred             ccCCCCccCCCCHHHHHHHHhhcCCCCceEEeEecCC-CCCEEEEeecCCceEEEEEEECCCC----CEEeCCCcccCCH
Confidence            44568999999999999999874 6789999999976 8999999999999999999886544    27775 4789999


Q ss_pred             hhHHhhhhcccCCC-Ccccccccc
Q psy10852        361 PSLLAFYKVHYLDT-SPLIKPATK  383 (563)
Q Consensus       361 ~~lv~~y~~~~~~~-~~l~~P~~~  383 (563)
                      .+||+||+.+.... +.|..|||.
T Consensus       101 ~~LV~~y~~~~~gL~~~L~~PcP~  124 (124)
T d2oq1a2         101 WQLVEYLKLKADGLIYCLKEACPN  124 (124)
T ss_dssp             HHHHHHHHHCCTTSSSCCCSBCCC
T ss_pred             HHHHHHHhhCCCCCcccCCCcCcC
Confidence            99999999887543 568888873

>d1a81a2 d.93.1.1 (A:138-262) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Syk tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.6e-16  Score=132.41  Aligned_cols=97  Identities=33%  Similarity=0.585  Sum_probs=81.6

Q ss_pred             CCCCCCccccccCHHHHHHHHhc-CCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeC-CcccCC
Q psy10852        282 PHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSD  359 (563)
Q Consensus       282 ~~~~~~w~~g~~sr~~A~~~l~~-~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~-~~~f~s  359 (563)
                      .++..+||||.|+|.+|+++|.. ...+|+||||.|+. +++|+||++.+++++|++|....++    .|.++ +..|+|
T Consensus        25 ~he~~pWyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~-~~~yvLSv~~~~~v~H~~I~~~~~g----~~~~~~~~~F~s   99 (125)
T d1a81a2          25 AHEKMPWFHGKISREESEQIVLIGSKTNGKFLIRARDN-NGSYALCLLHEGKVLHYRIDKDKTG----KLSIPEGKKFDT   99 (125)
T ss_dssp             SGGGSTTEEEECCHHHHHHHHHSSCCCTTCEEEEECSS-SSCEEEEEEETTEEEEEEEEECTTS----CEECTTSCCBSC
T ss_pred             ccccCCccCCCCCHHHHHHHHHhcCCCCceEEEEecCC-CCCEEEEeeccccceeEeeeEcCCC----cEeccCCcccCC
Confidence            45566899999999999999875 46679999999876 7999999999999999999986544    27775 578999


Q ss_pred             hhhHHhhhhcccCCC-Ccccccccc
Q psy10852        360 LPSLLAFYKVHYLDT-SPLIKPATK  383 (563)
Q Consensus       360 l~~lv~~y~~~~~~~-~~l~~P~~~  383 (563)
                      +.+||+||+.++... +.|..||++
T Consensus       100 L~~LI~~y~~~~~gL~~~L~~P~~k  124 (125)
T d1a81a2         100 LWQLVEHYSYKADGLLRVLTVPCQK  124 (125)
T ss_dssp             HHHHHHHHTTCCTTSSSCCCCBCCC
T ss_pred             HHHHHHHHhhCCCCCCccCCeeCCC
Confidence            999999999877543 678899876

>d1qcfa2 d.93.1.1 (A:146-248) Hemopoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Hemopoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3.2e-16  Score=127.84  Aligned_cols=94  Identities=33%  Similarity=0.582  Sum_probs=79.7

Q ss_pred             CCccccccCHHHHHHHHhcC-CCCCcEEEEecCCCCcceEEEEEe-----CCeeEEEEEeeecCCCcceeEEeC-CcccC
Q psy10852        286 NSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKITNTEQQTCYKIG-DKTFS  358 (563)
Q Consensus       286 ~~w~~g~~sr~~A~~~l~~~-~~~G~FlvR~S~~~~g~~~ls~~~-----~~~v~h~~I~~~~~~~~~~~~~i~-~~~f~  358 (563)
                      +.||||.|+|++|+.+|... ..+|+||||.|.+.+|.|+|+++.     +..|+|+.|...+++    .|++. +..|+
T Consensus         1 e~Wy~g~isR~eAe~~L~~~~~~~G~FLVR~S~~~~g~~~Lsv~~~~~~~~~~v~H~~i~~~~~g----~~~~~~~~~F~   76 (103)
T d1qcfa2           1 EEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNG----GFYISPRSTFS   76 (103)
T ss_dssp             STTEETTCCHHHHHHHHHSTTCCTTCEEEEECSSSTTSEEEEEEEEETTTEEEEEEEEEEECTTS----CEESSSSSCBS
T ss_pred             CCccCCCCCHHHHHHHHhhcCCCCCcEEEEccCCCCCCeEEEEEecCCCcCceEEEEEEEEcCCC----ceeecCCcccC
Confidence            47999999999999998754 678999999999999999999985     468999999887654    36664 57899


Q ss_pred             ChhhHHhhhhcccCCC-Ccccccccc
Q psy10852        359 DLPSLLAFYKVHYLDT-SPLIKPATK  383 (563)
Q Consensus       359 sl~~lv~~y~~~~~~~-~~l~~P~~~  383 (563)
                      |+.+||+||+.+++.. ++|..||++
T Consensus        77 sl~~LV~~y~~~~~gL~~~L~~PC~~  102 (103)
T d1qcfa2          77 TLQELVDHYKKGNDGLCQKLSVPCMS  102 (103)
T ss_dssp             SHHHHHHHHTSSCTTSSSCCCSBCCC
T ss_pred             CHHHHHHHHhhCCCCCCccCCccCCC
Confidence            9999999999887654 678899875

>d1r1qa_ d.93.1.1 (A:) GRB2-related adaptor protein 2 (MONA, GRID) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: GRB2-related adaptor protein 2 (MONA, GRID)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=3.2e-16  Score=125.84  Aligned_cols=85  Identities=24%  Similarity=0.551  Sum_probs=75.7

Q ss_pred             CCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeCCcccCChhhHH
Q psy10852        285 RNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLL  364 (563)
Q Consensus       285 ~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~~~~f~sl~~lv  364 (563)
                      ..+||+|.|+|++|+++|.+ ..+|+||||.|.+.+|.|+||++.++.++|++|....++    .|.+++..|+|+.+||
T Consensus         5 ~~~Wy~g~isR~~Ae~lL~~-~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g----~~~~~~~~F~sl~~LV   79 (97)
T d1r1qa_           5 FPEWFHEGLSRHQAENLLMG-KDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTKG----NYFLWTEKFPSLNKLV   79 (97)
T ss_dssp             CCTTBCTTCCHHHHHHHHHT-SCTTCEEEEECSSSTTCEEEEEECSSSEEEEECEECTTC----CEESSSCCBSSHHHHH
T ss_pred             cCCccCCCCCHHHHHHHHhc-CCCCCEEEeecCCCCCCEEEEEEecCCeEEEEEEEcCCC----eEEeCCCCcCCHHHHH
Confidence            45899999999999999986 457999999999999999999999999999999987654    2777889999999999


Q ss_pred             hhhhcccCCC
Q psy10852        365 AFYKVHYLDT  374 (563)
Q Consensus       365 ~~y~~~~~~~  374 (563)
                      +||+.+++..
T Consensus        80 ~~y~~~~l~~   89 (97)
T d1r1qa_          80 DYYRTTSISK   89 (97)
T ss_dssp             HHTTTSCSCS
T ss_pred             HHHccCCcCC
Confidence            9999887653

>d1blja_ d.93.1.1 (A:) P55 Blk protein tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: P55 Blk protein tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=2.7e-16  Score=130.72  Aligned_cols=99  Identities=29%  Similarity=0.547  Sum_probs=83.0

Q ss_pred             CCCCCCCccccccCHHHHHHHHhcC-CCCCcEEEEecCCCCcceEEEEEe----CCeeEEEEEeeecCCCcceeEEeC-C
Q psy10852        281 DPHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKE----NNKVSHYIINKITNTEQQTCYKIG-D  354 (563)
Q Consensus       281 ~~~~~~~w~~g~~sr~~A~~~l~~~-~~~G~FlvR~S~~~~g~~~ls~~~----~~~v~h~~I~~~~~~~~~~~~~i~-~  354 (563)
                      +..+.++||||+|+|.+|+++|... ..+|+||||.|++.++.|+|+++.    +..|+|+.|...+++    .|++. .
T Consensus         7 ~~l~~e~Wy~g~isR~eAe~~L~~~~~~~G~FLVR~S~~~~g~~~Lsv~~~~~~~~~v~H~~i~~~~~g----~~~l~~~   82 (114)
T d1blja_           7 ETLEVEKWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEVVKHYKIRSLDNG----GYYISPR   82 (114)
T ss_dssp             CCSCCSSSBCCSCCHHHHHHHHSSTTCCTTCEEBCBCTTCSSCEEEEECBCCTTTCBCCCEEEEEETTT----EEEEETT
T ss_pred             CccccCCCcCCCCCHHHHHHHHHhcCCCCceEEEeccCCCCCCeEEEEEeeccCCCEEEEEEEEEcCCC----CEEecCC
Confidence            4556679999999999999988764 678999999999999999999985    356899999987654    37775 4


Q ss_pred             cccCChhhHHhhhhcccCCC-Ccccccccc
Q psy10852        355 KTFSDLPSLLAFYKVHYLDT-SPLIKPATK  383 (563)
Q Consensus       355 ~~f~sl~~lv~~y~~~~~~~-~~l~~P~~~  383 (563)
                      ..|+|+.+||+||+.+++.. ++|..||++
T Consensus        83 ~~F~sl~eLV~~y~~~~~gL~~~L~~PC~~  112 (114)
T d1blja_          83 ITFPTLQALVQHYSKKGDGLCQKLTLPCVN  112 (114)
T ss_dssp             EEESSHHHHHHHHHHCCSSSSSCCCCCSCC
T ss_pred             ceECCHHHHHHHHhhCCCCCCccCCccCcC
Confidence            68999999999999988754 678899875

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.1e-16  Score=128.89  Aligned_cols=88  Identities=24%  Similarity=0.367  Sum_probs=69.2

Q ss_pred             CCCeeeEEecCceeecccccccccccccccCCCCCCCCCCCCCccccccccccCccceeeeeccccCCCCCCceeeccCC
Q psy10852        151 ISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGD  230 (563)
Q Consensus       151 ~~g~~G~fP~~yv~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~a~~~~eLsf~~Gd  230 (563)
                      .+|++|+||++||+.+.+......                           .......++++.|.+++..++||+|++||
T Consensus         5 ~~G~~G~~P~~yv~~~~~~~~~~~---------------------------~~~~~~~~~~Alydy~a~~~~ELsf~~Gd   57 (98)
T d1udla_           5 SSGQKGWFPASHVKLLGPSSERAT---------------------------PAFHPVCQVIAMYDYAANNEDELSFSKGQ   57 (98)
T ss_dssp             CSSCCSSCCCCCCCCCSCCCCCCC---------------------------SCCCCSEEEEESSCCCCSSTTSCCCCTTC
T ss_pred             CCCceeeEcccceeECCCcccccC---------------------------CCCCCccEEEEccCCCCCCCCEeeEcCCC
Confidence            578999999999988764221110                           01112345556666688899999999999


Q ss_pred             EEEEeeecCCCceeeeeCCceeeccccceeecCCC
Q psy10852        231 IIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN  265 (563)
Q Consensus       231 ~v~V~~~~~~~W~~g~~~g~~G~~P~~~ve~~~~~  265 (563)
                      +|.|+++.++|||+|+++|+.|+||.|||+.+...
T Consensus        58 ~i~Vl~~~~~gWw~g~~~g~~G~~P~nyVe~~~~~   92 (98)
T d1udla_          58 LINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTDS   92 (98)
T ss_dssp             EEEECBCCSSSEEBCBSSSCBCCEETTSEEECCCC
T ss_pred             EEEEeEecCCCeEEEEECCeEEEEchHHEEECCCC
Confidence            99999999999999999999999999999998753

>d2eyva1 d.93.1.1 (A:12-120) Crk proto-oncogen {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Crk proto-oncogen
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=5e-16  Score=128.34  Aligned_cols=96  Identities=53%  Similarity=0.941  Sum_probs=81.1

Q ss_pred             CccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcc-------------eeEEeC
Q psy10852        287 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ-------------TCYKIG  353 (563)
Q Consensus       287 ~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~-------------~~~~i~  353 (563)
                      +||+|.|+|++|+.+|.+ ..+|+||||.|.+.++.|+|+++.+++++|+.|...+.+...             ..|.++
T Consensus         1 sWy~g~isR~~Ae~lL~~-~~~G~FLVR~S~~~~~~~~LS~~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (109)
T d2eyva1           1 SWYWGRLSRQEAVALLQG-QRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVSPSRLRIG   79 (109)
T ss_dssp             TSCCBCCCHHHHHHHCSS-CSTTCEEEECCCSSSSCEEEEEEETTEEEEEEEECCCCSSCCCSSSSCCCCSCCCCCEEET
T ss_pred             CCCCCCCCHHHHHHHhcC-CCCCeEEeeecCCCCCCEEEEEEECCEEEEEEEEEcCCcceeeccccccccccccceEEeC
Confidence            599999999999999965 457999999999999999999999999999999886543110             014445


Q ss_pred             CcccCChhhHHhhhhcccCCCCcccccccc
Q psy10852        354 DKTFSDLPSLLAFYKVHYLDTSPLIKPATK  383 (563)
Q Consensus       354 ~~~f~sl~~lv~~y~~~~~~~~~l~~P~~~  383 (563)
                      +..|+|+.+||+||+.+.+..++|..|+++
T Consensus        80 ~~~F~sl~~LV~~y~~~~l~~~~L~~P~~r  109 (109)
T d2eyva1          80 DQEFDSLPALLEFYKIHYLDTTTLIEPVSR  109 (109)
T ss_dssp             TEEESSHHHHHHHSSSSCSSSSCCCSBCCS
T ss_pred             CeeeCCHHHHHHHHhhCcCCCCccCCcCCC
Confidence            678999999999999999988999999864

>d1o48a_ d.93.1.1 (A:) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=3.9e-16  Score=127.90  Aligned_cols=95  Identities=35%  Similarity=0.635  Sum_probs=79.3

Q ss_pred             CCCccccccCHHHHHHHHhcC-CCCCcEEEEecCCCCcceEEEEEeCC-----eeEEEEEeeecCCCcceeEEeC-Cccc
Q psy10852        285 RNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENN-----KVSHYIINKITNTEQQTCYKIG-DKTF  357 (563)
Q Consensus       285 ~~~w~~g~~sr~~A~~~l~~~-~~~G~FlvR~S~~~~g~~~ls~~~~~-----~v~h~~I~~~~~~~~~~~~~i~-~~~f  357 (563)
                      .++||||.|+|++|+++|.+. ..+|+||||.|.+.+|+|+|+++..+     .|.|+.|....++    +|.+. +..|
T Consensus         4 ~~~Wy~g~i~R~eAe~lL~~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~~i~h~~i~~~~~g----~~~~~~~~~F   79 (106)
T d1o48a_           4 AEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSG----GFYITSRTQF   79 (106)
T ss_dssp             GSTTEEESCCHHHHHHHHCCTTCCTTCEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEEECTTS----CEESSTTSEE
T ss_pred             cCCccCCCCCHHHHHHHHHhcCCCCCcEEEEcccCCCCCEEEEEEecccCcccceEEEEEEEecCC----CEEEcCCeeE
Confidence            469999999999999999864 67899999999999999999998643     5778888876554    37775 5789


Q ss_pred             CChhhHHhhhhcccCCC-Ccccccccc
Q psy10852        358 SDLPSLLAFYKVHYLDT-SPLIKPATK  383 (563)
Q Consensus       358 ~sl~~lv~~y~~~~~~~-~~l~~P~~~  383 (563)
                      +|+.+||+||+.+++.. +.|..|||.
T Consensus        80 ~sl~eLV~~y~~~~~gL~~~L~~pcP~  106 (106)
T d1o48a_          80 NSLQQLVAYYSKHADGLCHRLTTVCPT  106 (106)
T ss_dssp             SSHHHHHHHHTTCCTTSSSCCCSBCCC
T ss_pred             CCHHHHHHHHhhCCCCCCccCCCcCCC
Confidence            99999999999988654 568888873

>d1luia_ d.93.1.1 (A:) Itk/tsk protein tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Itk/tsk protein tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=5.5e-16  Score=127.27  Aligned_cols=96  Identities=27%  Similarity=0.527  Sum_probs=78.8

Q ss_pred             CCCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeC------CeeEEEEEeeecCCCcceeEEeC-Ccc
Q psy10852        284 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKEN------NKVSHYIINKITNTEQQTCYKIG-DKT  356 (563)
Q Consensus       284 ~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~------~~v~h~~I~~~~~~~~~~~~~i~-~~~  356 (563)
                      +...||+|.|+|++|+++|.+...+|+||||.|++ +|+|+||++..      ..++|++|....++...  |.+. ...
T Consensus         4 ~~~~Wy~g~isR~eAe~lL~~~~~~G~FLVR~S~~-~g~y~LSv~~~~~~~~~~~i~h~~I~~~~~~~~~--~~~~~~~~   80 (108)
T d1luia_           4 ETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRT-PGTYTVSVFTKAIISENPCIKHYHIKETNDSPKR--YYVAEKYV   80 (108)
T ss_dssp             TTSTTBCTTCCHHHHHHHHHHHCCTTEEEEEECCT-TTCEEEEEECSCCTTTCSCEEEEECEECCCSSCC--EESSSSCC
T ss_pred             ccCCCcCCCCCHHHHHHHHHhcCCCCeEEEEecCC-CCCEEEEEEecCCcccCCceeEEEEEEecCCCce--eecCCCcc
Confidence            45589999999999999997655679999999976 89999999863      46899999887665443  5554 588


Q ss_pred             cCChhhHHhhhhcccCCC-Cccccccc
Q psy10852        357 FSDLPSLLAFYKVHYLDT-SPLIKPAT  382 (563)
Q Consensus       357 f~sl~~lv~~y~~~~~~~-~~l~~P~~  382 (563)
                      |+|+.+||+||+.++... +.|..|++
T Consensus        81 F~sl~~LV~~y~~~~~~L~~~L~~Pv~  107 (108)
T d1luia_          81 FDSIPLLIQYHQYNGGGLVTRLRYPVC  107 (108)
T ss_dssp             BSSHHHHHHHHHTTCCSSSSSSSEECC
T ss_pred             cCCHHHHHHHHhhCCCCCccCCCCcCC
Confidence            999999999999887654 67888875

>d1mila_ d.93.1.1 (A:) Shc adaptor protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Shc adaptor protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.6e-16  Score=127.13  Aligned_cols=92  Identities=28%  Similarity=0.504  Sum_probs=77.4

Q ss_pred             CCCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeCCcccCChhhH
Q psy10852        284 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSL  363 (563)
Q Consensus       284 ~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~~~~f~sl~~l  363 (563)
                      ..++||||.|+|++|+.+|.   .+|+||||.|++.+|.|+||++.++.++|+.|...+..     |.+.+..|+|+.+|
T Consensus         5 ~~~pWyhG~i~R~~Ae~lL~---~~G~FLVR~S~~~~g~~vLSv~~~~~v~H~~I~~~~~~-----~~~~~~~F~sl~~L   76 (104)
T d1mila_           5 RGEPWFHGKLSRREAEALLQ---LNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPEGV-----VRTKDHRFESVSHL   76 (104)
T ss_dssp             TTCTTBCSSCCHHHHHTTCC---STTEEEEEECCSSCSSEEEEEEETTEEEEEEEBCTTSS-----EECSSCEESSHHHH
T ss_pred             ccCCCcCCCCCHHHHHHHHh---cCCcEEEEecCCCCCCEEEEEEEccccceEEEEeCCCE-----EEeCCeeECCHHHH
Confidence            45699999999999999994   46999999999999999999999999999999764433     88888999999999


Q ss_pred             HhhhhcccCCC------Ccccccccc
Q psy10852        364 LAFYKVHYLDT------SPLIKPATK  383 (563)
Q Consensus       364 v~~y~~~~~~~------~~l~~P~~~  383 (563)
                      |+||+.+.+..      ..|..|+++
T Consensus        77 V~~y~~~~~~~~~~~~~~~L~~Pi~R  102 (104)
T d1mila_          77 ISYHMDNHLPIISAGSELCLQQPVER  102 (104)
T ss_dssp             HHHHHHHTCCEEETTEEECCCEECCC
T ss_pred             HHHHhhCCCCcccCCcceEeCCCcCC
Confidence            99999876532      345566543

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=2.9e-16  Score=112.05  Aligned_cols=54  Identities=26%  Similarity=0.436  Sum_probs=50.8

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEc
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI  537 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~  537 (563)
                      +|+|+++|.  +++++||+|++||+|.|++..++|||.|+.+|++||||++||++|
T Consensus         3 yarAlydy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yve~i   56 (57)
T d1utia_           3 WARALYDFE--ALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPM   56 (57)
T ss_dssp             EEEESSCBC--CCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEECcCCC--CCCcCCcCCCCCCEEEEeEEcCCCEEEEEECCcEEEEEHHHEEEc
Confidence            799999999  555899999999999999999999999999999999999999986

>d1g83a2 d.93.1.1 (A:142-245) Tyrosine kinase Fyn {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine kinase Fyn
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=9e-16  Score=125.37  Aligned_cols=93  Identities=35%  Similarity=0.653  Sum_probs=76.9

Q ss_pred             CCCCccccccCHHHHHHHHhcC-CCCCcEEEEecCCCCcceEEEEEe-----CCeeEEEEEeeecCCCcceeEEeC-Ccc
Q psy10852        284 DRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKITNTEQQTCYKIG-DKT  356 (563)
Q Consensus       284 ~~~~w~~g~~sr~~A~~~l~~~-~~~G~FlvR~S~~~~g~~~ls~~~-----~~~v~h~~I~~~~~~~~~~~~~i~-~~~  356 (563)
                      +.++||||.|+|++|+++|... ..+|+||||.|.+.+|+|+||++.     +..|+|++|...+.+    +|++. ...
T Consensus         4 ~~~~Wy~g~i~R~eAe~~L~~~g~~~G~FLVR~S~~~~g~~~Lsv~~~~~~~~~~v~h~~i~~~~~g----~~~~~~~~~   79 (104)
T d1g83a2           4 QAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKLDNG----GYYITTRAQ   79 (104)
T ss_dssp             GGSSSBCTTCCHHHHHHHHHSTTCCTTCEEEEECSSSTTCEEEEEEEECSSSCEEEEEEEEEECTTS----CEEETTTEE
T ss_pred             ccCCCcCCCCCHHHHHHHHHhcCCCCCcEEEeccCCCCCCeEEEEEEeecCcCCeEEEEEEEEcCCC----CEEecCCcc
Confidence            4569999999999999999864 668999999999999999999985     457999999876554    26665 588


Q ss_pred             cCChhhHHhhhhcccCCC-Cccccc
Q psy10852        357 FSDLPSLLAFYKVHYLDT-SPLIKP  380 (563)
Q Consensus       357 f~sl~~lv~~y~~~~~~~-~~l~~P  380 (563)
                      |+|+.+||+||+.+++.. ++|..|
T Consensus        80 F~sl~~LV~~y~~~~~gL~~~L~~P  104 (104)
T d1g83a2          80 FETLQQLVQHYSERAAGLSSRLVVP  104 (104)
T ss_dssp             ESSHHHHHHHHHHCCTTSSSCCCCC
T ss_pred             cCCHHHHHHHHhhCCCCCceeCCCC
Confidence            999999999999887653 455554

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=4.2e-16  Score=111.23  Aligned_cols=55  Identities=27%  Similarity=0.665  Sum_probs=52.2

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEec
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY  441 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~  441 (563)
                      .+|+|||+|.++.++||+|++||+|.|+++.+++||.|+ .+|+.|+||++||+++
T Consensus         2 ~yarAlydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yve~i   56 (57)
T d1utia_           2 RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGR-LHNKLGLFPANYVAPM   56 (57)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEE-ETTEEEEEEGGGEEEC
T ss_pred             EEEEECcCCCCCCcCCcCCCCCCEEEEeEEcCCCEEEEE-ECCcEEEEEHHHEEEc
Confidence            479999999999999999999999999999999999998 6899999999999986

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=5.3e-16  Score=110.38  Aligned_cols=54  Identities=24%  Similarity=0.379  Sum_probs=50.3

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEc
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI  537 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~  537 (563)
                      +++|+++|.  +++++||+|++||+|.|+.+.++|||+|+.+|++||||++||+.|
T Consensus         3 yv~Alydy~--~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~v   56 (56)
T d1gcqa_           3 YVQALFDFD--PQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPV   56 (56)
T ss_dssp             EEEESSCBC--CCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEECcCCC--cCCcCCcCCCCCCEEEEEEecCCCEEEEEECCeEEEEEHhHEEEC
Confidence            789999999  445889999999999999999999999999999999999999975

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

Probab=99.60  E-value=6.2e-16  Score=110.75  Aligned_cols=56  Identities=25%  Similarity=0.371  Sum_probs=51.5

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP  538 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~  538 (563)
                      .+|+|+++|.  +++++||+|++||+|.|++..++|||.|+++|++||||++||+++.
T Consensus         3 ~~~~Alydy~--~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yvep~n   58 (58)
T d1sema_           3 KFVQALFDFN--PQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPYN   58 (58)
T ss_dssp             CEEEESSCBC--CSSTTBCCBCTTCEEEEEECSSSSEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEEECCCCC--cCCcCCcCCCCCCEEEEeEEcCCCEEEEEECCeEEEEEhhhEEECc
Confidence            3789999999  4458999999999999999999999999999999999999999763

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=6e-16  Score=110.07  Aligned_cols=55  Identities=29%  Similarity=0.685  Sum_probs=51.8

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEec
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY  441 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~  441 (563)
                      .+++|||+|.++.++||+|++||+|.|+++.+++||+|+ .+|+.|+||++||+++
T Consensus         2 tyv~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~-~~g~~G~~P~~yv~~v   56 (56)
T d1gcqa_           2 TYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGA-CHGQTGMFPRNYVTPV   56 (56)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEE-ETTEEEEEEGGGEEEC
T ss_pred             EEEEECcCCCcCCcCCcCCCCCCEEEEEEecCCCEEEEE-ECCeEEEEEHhHEEEC
Confidence            468999999999999999999999999999999999998 6899999999999975

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

Probab=99.59  E-value=6.6e-16  Score=110.61  Aligned_cols=56  Identities=32%  Similarity=0.778  Sum_probs=52.7

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEecc
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS  442 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~  442 (563)
                      .+|+|||+|.++.++||+|.+||+|.|+.+.++|||.|+ .+|+.||||++||+++.
T Consensus         3 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~-~~g~~G~~P~~yvep~n   58 (58)
T d1sema_           3 KFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQ-LNNRRGIFPSNYVCPYN   58 (58)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEE-ETTEEEEEEGGGEEECC
T ss_pred             EEEEECCCCCcCCcCCcCCCCCCEEEEeEEcCCCEEEEE-ECCeEEEEEhhhEEECc
Confidence            478999999999999999999999999999999999998 68999999999999863

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.2e-15  Score=107.05  Aligned_cols=52  Identities=19%  Similarity=0.436  Sum_probs=49.7

Q ss_pred             eEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeE
Q psy10852        387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ  439 (563)
Q Consensus       387 ~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~  439 (563)
                      .++|+|+|.++.++||+|++||+|.|+.+.++|||.|+ .+|+.||||++||+
T Consensus         2 ~yval~~y~a~~~~eLs~~~Gd~v~vl~~~~~gWw~g~-~~g~~G~~P~~yve   53 (53)
T d1wlpb1           2 PYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIR-KDDVTGYFPSMYLQ   53 (53)
T ss_dssp             EEEECSCBCCCSSSBCCBCTTCEEEEEECCTTSSEEEE-SSSCEEEECSTTEE
T ss_pred             eEEEeeeECCCCCCEecCCCCCEEEEEeecCCceEEEE-ECCcEeEecHHhCC
Confidence            57899999999999999999999999999999999998 79999999999996

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=7.9e-16  Score=109.88  Aligned_cols=55  Identities=58%  Similarity=1.061  Sum_probs=52.2

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEe
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK  440 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~  440 (563)
                      +.++|||+|.++.+++|+|++||+|.|+.+.+++||.|++.+|+.|+||++||++
T Consensus         2 ~~v~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~vP~~yve~   56 (57)
T d1ckaa_           2 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK   56 (57)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEC
T ss_pred             CEEEECCCCCcCCcCCcCCCCCCEEEEEEEcCCCeEEEEECCCCEEEEcHHHeEE
Confidence            4689999999999999999999999999999999999997889999999999986

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.59  E-value=1.1e-15  Score=108.26  Aligned_cols=54  Identities=17%  Similarity=0.290  Sum_probs=50.0

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEc
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI  537 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~  537 (563)
                      .++|+++|.  +++++||+|++||+|.|+++.++|||.|+++|++||||++||+.|
T Consensus         2 ~~vAl~dy~--~~~~~eLs~~~Gd~v~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~i   55 (55)
T d1u06a1           2 LVLALYDYQ--EKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL   55 (55)
T ss_dssp             EEEECSCBC--CCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEECCCCC--CCCcCCccCCCCCEEEEeEEcCCCEEEEEECCeEEEEeHHHEEEC
Confidence            578899998  556999999999999999999999999999999999999999975

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=9.6e-16  Score=111.47  Aligned_cols=57  Identities=32%  Similarity=0.666  Sum_probs=53.3

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEecc
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS  442 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~  442 (563)
                      ...++|||+|.++.++||+|++||+|.|+.+.+++||.|+ .+|+.||||++||+++.
T Consensus         5 g~~v~Aly~y~a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~-~~g~~G~~P~~yVe~~~   61 (62)
T d1k4us_           5 GSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGE-SKGKVGIFPKVFVEDSA   61 (62)
T ss_dssp             CEEEECCSCBCCCSSSBCCBCSSCEEEEEEESSSSCEEEE-CSSCEEEECGGGCCCSC
T ss_pred             CCEEEECCCCCCCCcCCcCCCCCCEEEEeEEcCCCEEEEE-ECCcEEEEchHHeEECC
Confidence            4589999999999999999999999999999999999998 69999999999998763

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.57  E-value=1.4e-15  Score=107.72  Aligned_cols=54  Identities=31%  Similarity=0.784  Sum_probs=51.2

Q ss_pred             eEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEec
Q psy10852        387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY  441 (563)
Q Consensus       387 ~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~  441 (563)
                      .++|+|+|.++.++||+|++||+|.|+++.++|||.|+ .+|+.||||++||+.+
T Consensus         2 ~~vAl~dy~~~~~~eLs~~~Gd~v~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~i   55 (55)
T d1u06a1           2 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKKL   55 (55)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEE-ETTEEEEEEGGGEEEC
T ss_pred             EEEECCCCCCCCcCCccCCCCCEEEEeEEcCCCEEEEE-ECCeEEEEeHHHEEEC
Confidence            57999999999999999999999999999999999998 7899999999999874

>d2cs0a1 d.93.1.1 (A:8-113) Hematopoietic SH2 domain containing protein HSH2D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Hematopoietic SH2 domain containing protein HSH2D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=7.5e-15  Score=120.09  Aligned_cols=96  Identities=23%  Similarity=0.525  Sum_probs=79.6

Q ss_pred             CCCCCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeCC--cccCC
Q psy10852        282 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD--KTFSD  359 (563)
Q Consensus       282 ~~~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~~--~~f~s  359 (563)
                      .-...+||+|.|+|++|+.+|.+. .+|+||||.|...++ |+|+++.++.++|+.|....++    +|.+..  ..|+|
T Consensus         5 ~~~~~pWy~g~isR~eAe~lL~~~-~~G~FLvR~S~~~~~-y~Lsv~~~~~~~h~~I~~~~~g----~~~~~~~~~~F~s   78 (106)
T d2cs0a1           5 QDGVPEWFHGAISREDAENLLESQ-PLGSFLIRVSHSHVG-YTLSYKAQSSCCHFMVKLLDDG----TFMIPGEKVAHTS   78 (106)
T ss_dssp             SSSCCSSBCSSCCHHHHHHHHHTS-CTTCEEEEECSSSSS-EEEEECCSSSCEEEEEEECTTS----CEECTTCSCCBSS
T ss_pred             CCCCCCCccCCCCHHHHHHHHcCC-CCCcEEEEecCCCCC-EEEEEEecCCceeEEEEEcCCC----CEEEecCCccCCC
Confidence            334568999999999999999864 569999999987665 9999999999999999887655    266643  67999


Q ss_pred             hhhHHhhhhcccCCC--Ccccccccc
Q psy10852        360 LPSLLAFYKVHYLDT--SPLIKPATK  383 (563)
Q Consensus       360 l~~lv~~y~~~~~~~--~~l~~P~~~  383 (563)
                      +.+||+||+++++..  +.|..|+++
T Consensus        79 l~eLV~~y~~~~~~~~~~~L~~P~~~  104 (106)
T d2cs0a1          79 LDALVTFHQQKPIEPRRELLTQPCRQ  104 (106)
T ss_dssp             HHHHHHHHTTSCCSSCCCCCCSBCCC
T ss_pred             HHHHHHHHHHCCCCCccCcccCcCCC
Confidence            999999999987754  457888865

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.4e-15  Score=106.59  Aligned_cols=52  Identities=19%  Similarity=0.267  Sum_probs=48.1

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceE
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE  535 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~  535 (563)
                      .+.|+++|.  ++.++||+|++||+|.|+++.++|||.|+.+|++||||++||+
T Consensus         2 ~yval~~y~--a~~~~eLs~~~Gd~v~vl~~~~~gWw~g~~~g~~G~~P~~yve   53 (53)
T d1wlpb1           2 PYVAIKAYT--AVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ   53 (53)
T ss_dssp             EEEECSCBC--CCSSSBCCBCTTCEEEEEECCTTSSEEEESSSCEEEECSTTEE
T ss_pred             eEEEeeeEC--CCCCCEecCCCCCEEEEEeecCCceEEEEECCcEeEecHHhCC
Confidence            357899998  6669999999999999999999999999999999999999996

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

Probab=99.57  E-value=1.5e-15  Score=106.73  Aligned_cols=53  Identities=34%  Similarity=0.763  Sum_probs=50.0

Q ss_pred             EEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEe
Q psy10852        388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK  440 (563)
Q Consensus       388 ~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~  440 (563)
                      ++|||+|.++.++||+|++||+|.|+++.+++||++++.+|+.||||++||+.
T Consensus         1 V~Alydy~a~~~~eLs~~~Gd~~~vl~~~~~~Ww~~~~~~g~~G~vP~~yv~e   53 (53)
T d2rn8a1           1 VIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVE   53 (53)
T ss_dssp             EEESSCCCCSSTTBCCCCTTCEEEECCCSCSSCEEEECTTSCEEEECGGGEEE
T ss_pred             CEEeeeECCCCCCeeeECCCCEEEEeEEcCCCeEEEEeCCCCEEEEeHHHEeC
Confidence            57999999999999999999999999999999999987889999999999974

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=6.5e-16  Score=110.94  Aligned_cols=56  Identities=20%  Similarity=0.338  Sum_probs=51.3

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP  538 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~  538 (563)
                      ..++|+++|.  +++++||+|++||+|.|+++.++|||.|+.+|++||||++||++++
T Consensus         3 ~~~~al~dy~--~~~~~eLs~~~Gd~i~vl~~~~~~Ww~~~~~g~~G~~P~~yve~ld   58 (58)
T d1ng2a1           3 QTYRAIADYE--KTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLD   58 (58)
T ss_dssp             EEEECSSCBC--CSSTTCCCBCTTCEEEEEECCTTSCCEEEECCCCCCCCGGGCCCSS
T ss_pred             eEEEECccCc--CCCCCCcCCCCCCEEEEEEecCCCeEEEEECCCCcEEcHhHEEECc
Confidence            3689999998  5568999999999999999999999999999999999999998764

>d1qada_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phosphatidylinositol 3-kinase, p85-alpha subunit
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.56  E-value=4.3e-15  Score=121.81  Aligned_cols=85  Identities=33%  Similarity=0.556  Sum_probs=70.6

Q ss_pred             CCCCCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEe-C-CcccCC
Q psy10852        282 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKI-G-DKTFSD  359 (563)
Q Consensus       282 ~~~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i-~-~~~f~s  359 (563)
                      .++..+||+|.|+|.+|+.+|.+ ..+|+||||.|. .++.|+||++.+++++|++|...+++     +++ . ...|+|
T Consensus         5 ~~~~~~Wy~g~isR~eAe~lL~~-~~~G~FLVR~S~-~~~~y~Lsv~~~~~v~H~~I~~~~~g-----~~~~~~~~~F~s   77 (107)
T d1qada_           5 HHDEKTWNVGSSNRNKAENLLRG-KRDGTFLVRESS-KQGCYACSVVVDGEVKHCVINKTATG-----YGFAEPYNLYSS   77 (107)
T ss_dssp             GGSGGGTEEEECCHHHHHHHHTT-CCTTEEEEEEC----CCEEEEEEETTEEEEEEEEEETTE-----EESSTTCCCBSS
T ss_pred             ccCCCcccCCCCCHHHHHHHHcC-CCCCcEEEEecC-CCCCEEEEEEecCCeEEEEEEECCCC-----eEEcCCCCccCC
Confidence            35566999999999999999976 456999999995 48999999999999999999987654     445 3 478999


Q ss_pred             hhhHHhhhhcccCC
Q psy10852        360 LPSLLAFYKVHYLD  373 (563)
Q Consensus       360 l~~lv~~y~~~~~~  373 (563)
                      +.+||+||+++++.
T Consensus        78 l~~LI~~Y~~~~l~   91 (107)
T d1qada_          78 LKELVLHYQHTSLV   91 (107)
T ss_dssp             HHHHHHHHHHSCGG
T ss_pred             HHHHHHHHHhCccc
Confidence            99999999988754

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=7.3e-16  Score=117.29  Aligned_cols=63  Identities=35%  Similarity=0.497  Sum_probs=55.6

Q ss_pred             ccceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCCCCCC
Q psy10852        480 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSV  544 (563)
Q Consensus       480 ~~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~~~~~  544 (563)
                      +.+++|+|+|.  +.+++||+|++||+|.|+++.++|||+|+.+|++||||++||++|++.....
T Consensus        10 ~~~~rAlydy~--a~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~i~~~~~~~   72 (76)
T d1ujya_          10 QLIVKARFNFK--QTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKSSERSG   72 (76)
T ss_dssp             CEEEECCSCBC--CSSTTSCCBCSSCCEEESSCCSSSCEEEEETTEEEEECTTTSEECCHHHHTC
T ss_pred             CEEEEECccCC--CCCCCCccCCCCCEEEEeEEcCCCEEEEEECCcEEEEchHHEEECCCCCCCC
Confidence            34789999999  5568999999999999999999999999999999999999999997654433

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=2.6e-15  Score=107.50  Aligned_cols=52  Identities=25%  Similarity=0.361  Sum_probs=48.7

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceE
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE  535 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~  535 (563)
                      .++|+++|.+  ++++||+|++||+|.|+++.++|||.|+.+|+.||||++||+
T Consensus         4 r~~Alydy~~--~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~   55 (58)
T d1uj0a_           4 RVRALYDFEA--VEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVT   55 (58)
T ss_dssp             EEEESSCBCC--CSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEE
T ss_pred             EEEECCCCCC--CCcCCcCCCCCCEEEEeEEeCCCEEEEEECCeEEEEehHhEe
Confidence            6899999995  458899999999999999999999999999999999999997

>d2izva2 d.93.1.1 (A:274-385) Suppressor of cytokine signaling 4, SOCS-4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Suppressor of cytokine signaling 4, SOCS-4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=6.8e-15  Score=121.48  Aligned_cols=93  Identities=24%  Similarity=0.359  Sum_probs=77.5

Q ss_pred             CCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeCC-----cccCC
Q psy10852        285 RNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD-----KTFSD  359 (563)
Q Consensus       285 ~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~~-----~~f~s  359 (563)
                      ..+||+|.|+|++|+++|.+. .+|+||||.|.+.++.|+||++.++.++|++|...+.+     |.+..     ..|+|
T Consensus        10 ~~~Wy~g~isR~~Ae~lL~~~-~~GtFLVR~S~~~~~~~~LSv~~~~~v~H~~I~~~~~~-----~~l~~~~~~~~~F~s   83 (112)
T d2izva2          10 NNPCYWGVMDKYAAEALLEGK-PEGTFLLRDSAQEDYLFSVSFRRYSRSLHARIEQWNHN-----FSFDAHDPCVFHSPD   83 (112)
T ss_dssp             HCTTEEEECCHHHHHHHHTTC-CTTEEEEEECSSTTCSEEEEEEETTEEEEEECEEETTE-----EESCTTCTTSCCBSS
T ss_pred             cCCCcCCCCCHHHHHHHHccC-CCCcEEEeecCCCCCCeEEEEEecCCceEEEEEEeCCe-----EEEeecccCcccCCC
Confidence            458999999999999999764 46999999999999999999999999999999886543     77753     36999


Q ss_pred             hhhHHhhhhcccCCC---Ccccccccc
Q psy10852        360 LPSLLAFYKVHYLDT---SPLIKPATK  383 (563)
Q Consensus       360 l~~lv~~y~~~~~~~---~~l~~P~~~  383 (563)
                      +.+||+||+++.+..   +.|..|+++
T Consensus        84 l~~LV~~Y~~~~~~~~~~~llt~P~~r  110 (112)
T d2izva2          84 ITGLLEHYKDPSACMFFEPLLSTPLIR  110 (112)
T ss_dssp             HHHHHHHTCCGGGCCTTSCCCCEECCC
T ss_pred             HHHHHHHHhcccccccCccccCCCCCC
Confidence            999999999887643   335666643

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=2.5e-15  Score=107.54  Aligned_cols=53  Identities=26%  Similarity=0.698  Sum_probs=50.5

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeE
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ  439 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~  439 (563)
                      .+++|+|+|.++.++||+|++||+|.|+++.+++||.|+ .+|+.||||++||+
T Consensus         3 rr~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~-~~g~~G~~P~~yV~   55 (58)
T d1uj0a_           3 RRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGE-NHRGTGLFPSNFVT   55 (58)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEE-ETTEEEEEEGGGEE
T ss_pred             CEEEECCCCCCCCcCCcCCCCCCEEEEeEEeCCCEEEEE-ECCeEEEEehHhEe
Confidence            479999999999999999999999999999999999998 58999999999997

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.55  E-value=3.7e-15  Score=107.01  Aligned_cols=56  Identities=29%  Similarity=0.596  Sum_probs=51.9

Q ss_pred             eEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEec-CCcEEEEcCCCeEecc
Q psy10852        387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYS  442 (563)
Q Consensus       387 ~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~-~g~~G~~P~~~v~~~~  442 (563)
                      .|+|+|+|.++.++||+|++||+|.|+++.+++||.|+.. +|+.|+||++||+.+.
T Consensus         2 ~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~~P~~yVe~in   58 (58)
T d1jo8a_           2 WATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLGN   58 (58)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             EEEEccCCCCCCcCCcCCCCCCEEEEEEEcCCCEEEEEECCCCCEEEEchHHEEEcC
Confidence            5899999999999999999999999999999999999854 7899999999999763

>d2shpa3 d.93.1.1 (A:111-218) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine phoshatase shp-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1e-14  Score=120.06  Aligned_cols=91  Identities=31%  Similarity=0.616  Sum_probs=75.1

Q ss_pred             CccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCC----------eeEEEEEeeecCCCcceeEEeC-Cc
Q psy10852        287 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENN----------KVSHYIINKITNTEQQTCYKIG-DK  355 (563)
Q Consensus       287 ~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~----------~v~h~~I~~~~~~~~~~~~~i~-~~  355 (563)
                      -||||.|+|++|+.+|.....+|+||||.|++.+|.|+||++..+          .++|+.|...+..     |.+. ..
T Consensus         1 rWyhG~i~R~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~~~~~~~~~~~~~h~~i~~~~~~-----~~~~~~~   75 (108)
T d2shpa3           1 RWFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVMIRCQELK-----YDVGGGE   75 (108)
T ss_dssp             TTBCCSCCHHHHHHHHHHTCCTTEEEEEECSSSTTCEEEEEEECC-----CCCCCEEEEEEEEEETTE-----EESSSSC
T ss_pred             CCCcCCCCHHHHHHHHhhcCCCCeEEEEecCCCCCCeEEEEEecCccccccccccceeeEEEEeCCCc-----eEeCCCc
Confidence            399999999999999987656899999999999999999999753          5788988776544     7775 58


Q ss_pred             ccCChhhHHhhhhcccCCC-----Cccccccc
Q psy10852        356 TFSDLPSLLAFYKVHYLDT-----SPLIKPAT  382 (563)
Q Consensus       356 ~f~sl~~lv~~y~~~~~~~-----~~l~~P~~  382 (563)
                      .|+|+.+||+||+++++..     +.|..|+.
T Consensus        76 ~F~sl~~LV~~y~~~~l~~~~g~~~~L~~Pv~  107 (108)
T d2shpa3          76 RFDSLTDLVEHYKKNPMVETLGTVLQLKQPLN  107 (108)
T ss_dssp             CBSSHHHHHHHHHHSCCBCTTSCBCCCCEECC
T ss_pred             ccCCHHHHHHHHhhCCCCCCCCceEEcCCCCc
Confidence            9999999999999887543     34666653

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.54  E-value=4.2e-15  Score=106.45  Aligned_cols=54  Identities=30%  Similarity=0.477  Sum_probs=49.5

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEeCC--CCEEEEEeCCeeeeecCCceEEc
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI--NGQWEGELNGKTGHFPFTHVEFI  537 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~--~~w~~g~~~g~~G~~P~~~v~~~  537 (563)
                      +|+|+++|.  +++++||+|++||+|.|+++.+  +|||.|+.+|++||||++||++|
T Consensus         3 ~~~Alydy~--a~~~~ELs~~~Gd~v~vl~~~~~~~~W~~~~~~g~~G~vP~~yve~i   58 (58)
T d1oota_           3 KAVALYSFA--GEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV   58 (58)
T ss_dssp             EEEESSCBC--CCSTTBCCBCTTCEEEEEECCSCTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             eEEEccCCC--CCCCCCccCCCCCEEEEEEeecCCCCEEEEEECCcEEEEcHHHEEEC
Confidence            689999998  6669999999999999999874  68999999999999999999986

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.8e-15  Score=110.00  Aligned_cols=55  Identities=31%  Similarity=0.281  Sum_probs=50.4

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEc
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI  537 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~  537 (563)
                      ..++|+++|.  +..++||+|++||+|.|++..++|||.|+++|+.||||++||+.+
T Consensus         6 ~~v~Aly~y~--a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~~~g~~G~~P~~yVe~~   60 (62)
T d1k4us_           6 SQVEALFSYE--ATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDS   60 (62)
T ss_dssp             EEEECCSCBC--CCSSSBCCBCSSCEEEEEEESSSSCEEEECSSCEEEECGGGCCCS
T ss_pred             CEEEECCCCC--CCCcCCcCCCCCCEEEEeEEcCCCEEEEEECCcEEEEchHHeEEC
Confidence            4689999999  555899999999999999999999999999999999999999765

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1e-14  Score=112.59  Aligned_cols=62  Identities=32%  Similarity=0.586  Sum_probs=54.0

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCC-----eeeeecCCceEEcCCCCCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNG-----KTGHFPFTHVEFIPTNETSV  544 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g-----~~G~~P~~~v~~~~~~~~~~  544 (563)
                      .+++|+++|.  +++++||+|++||+|.|+++.++|||+|++++     ++||||++||+++.+.....
T Consensus         8 ~~~~al~~y~--~~~~~eLs~~~Gd~i~Vl~~~~~~Ww~g~~~~~~~~~~~G~~P~~yv~~~~~~~~~~   74 (80)
T d1ue9a_           8 EIAQVTSAYV--ASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGPSSERA   74 (80)
T ss_dssp             EEEEECSCCC--CCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEECCSCCSSC
T ss_pred             CEEEECcCCC--CCCCCEeeEcCCCEEEEEEEeCCCeEEEEEccCCCCCCEeEEEheeEEECCCCCCCC
Confidence            4799999999  55589999999999999999999999999754     58999999999998765543

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.54  E-value=4.5e-15  Score=106.55  Aligned_cols=55  Identities=25%  Similarity=0.289  Sum_probs=50.3

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEe--CCeeeeecCCceEEcC
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIP  538 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~--~g~~G~~P~~~v~~~~  538 (563)
                      +|+|+++|.  +.+++||+|++||+|.|+++.++|||.|++  +|++||||++||++++
T Consensus         2 ~~~Alydy~--~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~~P~~yVe~in   58 (58)
T d1jo8a_           2 WATAEYDYD--AAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLGN   58 (58)
T ss_dssp             CEEESSCBC--CCSTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             EEEEccCCC--CCCcCCcCCCCCCEEEEEEEcCCCEEEEEECCCCCEEEEchHHEEEcC
Confidence            689999999  556899999999999999999999999987  4799999999999874

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.54  E-value=3.9e-15  Score=110.02  Aligned_cols=57  Identities=32%  Similarity=0.765  Sum_probs=50.8

Q ss_pred             eeeEEEeecccCCCCC-CCCCCCCCEEEEEEecC-----CCcEEEEecCCcEEEEcCCCeEec
Q psy10852        385 IEKVIAKYDFDGNDPD-DLPFKKNDILIVVSKDE-----EHWWTAQNISGEVGSIPVPYVQKY  441 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~-el~~~~g~~v~v~~~~~-----~~W~~~~~~~g~~G~~P~~~v~~~  441 (563)
                      ...|+|||+|.++.++ ||+|++||+|.|+++.+     +|||.|++.+|+.|+||+|||+.+
T Consensus         5 ~~~~~Alydy~~~~~~~ELs~~~Gd~i~vl~~~d~~~~~~~Ww~g~~~~G~~G~~P~nyve~i   67 (67)
T d2v1ra1           5 LEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII   67 (67)
T ss_dssp             CEEEEESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECTTSCEEEEEGGGEEEC
T ss_pred             CEEEEECccCCCCCCCCEeCCCCCCEEEEEEeecCCCcCCCeEEEEeCCCCEEEEEHHHEEEC
Confidence            4579999999998765 99999999999999864     489999877899999999999864

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=6.7e-15  Score=111.07  Aligned_cols=59  Identities=31%  Similarity=0.436  Sum_probs=52.3

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCCCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET  542 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~~~~  542 (563)
                      .+++|+++|.  ++.++||+|++||+|.|+++ +++||+|+++|++||||++||+.+.....
T Consensus        11 ~~~~alydy~--a~~~~ELs~~~Gd~i~vl~~-~~~ww~g~~~g~~G~fP~~yve~i~~~~~   69 (74)
T d1j3ta_          11 LKAQALCSWT--AKKDNHLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKIIPGSES   69 (74)
T ss_dssp             CEEEESSCBC--CCSTTBCCBCTTCEEEEEEE-CSSEEEEESTTCCCEEEGGGEEECCCSTT
T ss_pred             eEEEEccCCC--CCCCCEecCCCCCEEEEEEc-cCCeEEEEECCcEEEEchhhEEECCCCCC
Confidence            3689999999  55689999999999999997 56999999999999999999999976543

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=5.6e-15  Score=109.37  Aligned_cols=59  Identities=34%  Similarity=0.705  Sum_probs=54.4

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ..++|||+|.++.++||+|++||+|.|+.+.+++||.+++.+|+.||||++||+++...
T Consensus         3 ~~v~Alydf~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yV~~~~~~   61 (67)
T d1gl5a_           3 EIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKKSN   61 (67)
T ss_dssp             SCEEECSCBCCSSSSBCCBCTTCEEEEEECSSSSEEEEECSSSCEEEEETTSEESSTTT
T ss_pred             EEEEECCCCCCCCcCCcCCCCCCEEEEEEecCCCcEEEEECCCCEEEEEhHHeEEecCC
Confidence            46899999999999999999999999999999999999877899999999999877553

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.5e-15  Score=109.00  Aligned_cols=55  Identities=24%  Similarity=0.553  Sum_probs=52.1

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEec
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY  441 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~  441 (563)
                      ..++|+|+|.++.++||+|++||+|.|+.+.+++||.|+ .+|+.||||++||+++
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~~~-~~g~~G~~P~~yve~l   57 (58)
T d1ng2a1           3 QTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQ-MKAKRGWIPASFLEPL   57 (58)
T ss_dssp             EEEECSSCBCCSSTTCCCBCTTCEEEEEECCTTSCCEEE-ECCCCCCCCGGGCCCS
T ss_pred             eEEEECccCcCCCCCCcCCCCCCEEEEEEecCCCeEEEE-ECCCCcEEcHhHEEEC
Confidence            478999999999999999999999999999999999998 6899999999999876

>d1rpya_ d.93.1.1 (A:) Adaptor protein Aps {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Adaptor protein Aps
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=2e-15  Score=118.59  Aligned_cols=80  Identities=21%  Similarity=0.434  Sum_probs=66.8

Q ss_pred             CCccccccCHHHHHHHHhcC--CCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeCCcccCChhhH
Q psy10852        286 NSWYFGMMTRQEAQAILLSE--KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSL  363 (563)
Q Consensus       286 ~~w~~g~~sr~~A~~~l~~~--~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~~~~f~sl~~l  363 (563)
                      .+||||.|+|++|+.+|...  ..+|+||||.|.+.+|.|+|+++.++.++|++|...+++   + +.+.+..|+|+.+|
T Consensus         5 ~pWyhg~isR~~Ae~lL~~~~~~~dG~FLvR~S~~~~g~~~Lsv~~~~~v~h~~I~~~~~~---~-~~~~~~~F~sl~~L   80 (86)
T d1rpya_           5 YPWFHGTLSRVKAAQLVLAGGPRSHGLFVIRQSETRPGECVLTFNFQGKAKHLRLSLNGHG---Q-CHVQHLWFQSVFDM   80 (86)
T ss_dssp             STTBCTTCCHHHHHHHHHTTGGGGTTCEEEEECSSSTTCEEEEEEETTEEEEEEC----CC---C-HHHHHHHHHHHHHH
T ss_pred             CcccCCCCCHHHHHHHHHhCCCCCCceEEEEecCCCCCcEEEEEEECCceEEEEEEEcCCc---e-EEeCCCeeCCHHHH
Confidence            48999999999999999874  467999999999999999999999999999999886554   1 33456899999999


Q ss_pred             Hhhhhc
Q psy10852        364 LAFYKV  369 (563)
Q Consensus       364 v~~y~~  369 (563)
                      |+||+.
T Consensus        81 V~~y~t   86 (86)
T d1rpya_          81 LRHFHT   86 (86)
T ss_dssp             HHHHTC
T ss_pred             HHhhcC
Confidence            999973

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

Probab=99.52  E-value=4.9e-15  Score=103.97  Aligned_cols=53  Identities=34%  Similarity=0.763  Sum_probs=50.5

Q ss_pred             eeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEeeCCCeeeEEecCceee
Q psy10852        113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK  165 (563)
Q Consensus       113 ~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~~~g~~G~fP~~yv~~  165 (563)
                      ++|+|+|.++.++||+|++||+|.|+++.+++||.+++.+|+.|+||++||++
T Consensus         1 V~Alydy~a~~~~eLs~~~Gd~~~vl~~~~~~Ww~~~~~~g~~G~vP~~yv~e   53 (53)
T d2rn8a1           1 VIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVE   53 (53)
T ss_dssp             EEESSCCCCSSTTBCCCCTTCEEEECCCSCSSCEEEECTTSCEEEECGGGEEE
T ss_pred             CEEeeeECCCCCCeeeECCCCEEEEeEEcCCCeEEEEeCCCCEEEEeHHHEeC
Confidence            47999999999999999999999999999999999998999999999999975

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=7.5e-15  Score=104.72  Aligned_cols=55  Identities=58%  Similarity=1.061  Sum_probs=52.2

Q ss_pred             eeeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEeeCCCeeeEEecCceee
Q psy10852        111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK  165 (563)
Q Consensus       111 ~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~~~g~~G~fP~~yv~~  165 (563)
                      +.++|+|||.++.+++|+|++||+|.|+++.+++||.+++.+|+.|+||++||++
T Consensus         2 ~~v~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~vP~~yve~   56 (57)
T d1ckaa_           2 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK   56 (57)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEC
T ss_pred             CEEEECCCCCcCCcCCcCCCCCCEEEEEEEcCCCeEEEEECCCCEEEEcHHHeEE
Confidence            3578999999999999999999999999999999999998899999999999986

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=5.4e-15  Score=106.36  Aligned_cols=57  Identities=26%  Similarity=0.608  Sum_probs=52.2

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccC
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  443 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~  443 (563)
                      .+++|+|+|.++.++||+|.+||+|.|+++. ++||.++..+|+.|+||++||+++..
T Consensus         2 ~~a~alydf~a~~~~ELs~~~Gd~i~v~~~~-~~ww~~~~~~g~~G~~P~nyve~i~~   58 (59)
T d1i07a_           2 KYAKSKYDFVARNSSELSVMKDDVLEILDDR-RQWWKVRNASGDSGFVPNNILDIMRT   58 (59)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEECGGG-CCEEEEECTTSCEEEEEGGGEEEECC
T ss_pred             eEEEEccCCCCCCCCeeeEcCCCEEEEEEEc-CCcEEEEEcCCCEEEECHHHeEECCC
Confidence            4799999999999999999999999999875 58999987899999999999998854

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.9e-14  Score=111.04  Aligned_cols=60  Identities=13%  Similarity=0.351  Sum_probs=54.3

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEe----cCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN----ISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~----~~g~~G~~P~~~v~~~~~~  444 (563)
                      ..+++|||+|.++.++||+|++||+|.|+.+.+++||+|+.    ..++.||||++||+.+...
T Consensus         7 g~~~~al~~y~~~~~~eLs~~~Gd~i~Vl~~~~~~Ww~g~~~~~~~~~~~G~~P~~yv~~~~~~   70 (80)
T d1ue9a_           7 GEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGPS   70 (80)
T ss_dssp             CEEEEECSCCCCCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEECCSC
T ss_pred             CCEEEECcCCCCCCCCEeeEcCCCEEEEEEEeCCCeEEEEEccCCCCCCEeEEEheeEEECCCC
Confidence            46899999999999999999999999999999999999974    2467999999999988765

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=5.8e-15  Score=106.76  Aligned_cols=57  Identities=30%  Similarity=0.524  Sum_probs=52.4

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEec-CCcEEEEcCCCeEec
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKY  441 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~-~g~~G~~P~~~v~~~  441 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||.+++. +|+.|+||++||+++
T Consensus         3 G~~~rAl~df~~~~~~eLs~~~Gd~i~v~~~~~~~W~~~~~~~~g~~G~vP~nyve~i   60 (60)
T d1arka_           3 GKIFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEAI   60 (60)
T ss_dssp             CCCEECCSCCCCSSSSBCCCCTTCEECCSEECSSSEEEEECTTTCCEEEEETTTCEEC
T ss_pred             CcEEEECccCCCCCCCCcCCCCCCEEEEEEEcCCCEEEEEECCCCCEEEEcHHHEEEC
Confidence            457899999999999999999999999999999999999854 789999999999875

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.50  E-value=1.2e-14  Score=104.09  Aligned_cols=54  Identities=37%  Similarity=0.919  Sum_probs=49.6

Q ss_pred             eEEEeecccCCCCCCCCCCCCCEEEEEEecC--CCcEEEEecCCcEEEEcCCCeEec
Q psy10852        387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDE--EHWWTAQNISGEVGSIPVPYVQKY  441 (563)
Q Consensus       387 ~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~--~~W~~~~~~~g~~G~~P~~~v~~~  441 (563)
                      +|+|+|+|.++.++||+|++||+|.|+++.+  ++||.++ .+|+.||||++||+.+
T Consensus         3 ~~~Alydy~a~~~~ELs~~~Gd~v~vl~~~~~~~~W~~~~-~~g~~G~vP~~yve~i   58 (58)
T d1oota_           3 KAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGR-VNGREGIFPANYVELV   58 (58)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCSCTTSEEEEE-ETTEEEEEEGGGEEEC
T ss_pred             eEEEccCCCCCCCCCccCCCCCEEEEEEeecCCCCEEEEE-ECCcEEEEcHHHEEEC
Confidence            6999999999999999999999999999874  4789997 6999999999999864

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.3e-14  Score=103.97  Aligned_cols=55  Identities=35%  Similarity=0.740  Sum_probs=50.7

Q ss_pred             eEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEe-cCCcEEEEcCCCeEec
Q psy10852        387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKY  441 (563)
Q Consensus       387 ~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~-~~g~~G~~P~~~v~~~  441 (563)
                      .++|+|+|.++.++||+|++||+|.|+++.+++||.++. .+|+.||||++||+++
T Consensus         2 l~vAl~dy~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~vP~~yv~pv   57 (57)
T d1efna_           2 LFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV   57 (57)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECSSCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             EEEECCCCCCCCcCCcCCCCCCEEEEEEecCCCCEEEEECCCCCEEEEeHHHeEEC
Confidence            478999999999999999999999999999999999975 4789999999999875

>d2c9wa2 d.93.1.1 (A:32-134) Suppressor of cytokine signaling 2, SOCS-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Suppressor of cytokine signaling 2, SOCS-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=4.4e-14  Score=114.91  Aligned_cols=79  Identities=27%  Similarity=0.470  Sum_probs=69.0

Q ss_pred             CCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeCC--------ccc
Q psy10852        286 NSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD--------KTF  357 (563)
Q Consensus       286 ~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~~--------~~f  357 (563)
                      .+||||+|+|++|+.+|.+ ..+|+||||.|.+.++.|+|+++.++.++|++|...+..     |.++.        ..|
T Consensus        15 ~~Wy~g~i~R~~Ae~~L~~-~~~GtFLVR~S~~~~~~~~LSv~~~~~v~H~~I~~~~~~-----~~~~~~~~~~~~~~~F   88 (103)
T d2c9wa2          15 TGWYWGSMTVNEAKEKLKE-APEGTFLIRDSSHSDYLLTISVKTSAGPTNLRIEYQDGK-----FRLDSIICVKSKLKQF   88 (103)
T ss_dssp             TSCBCTTCCHHHHHHHHTT-SCTTCEEEEECCSTTCSEEEEEEETTEEEEEEEEEETTE-----EEECTTTTTGGGCCCB
T ss_pred             CCCcCCCCCHHHHHHHhcC-CCCCceEEeccCCCCCCEEEEEEECCEEEEEEEEEcCCe-----EeeCCccccccCCCcc
Confidence            4899999999999999975 457999999999999999999999999999999886543     66542        569


Q ss_pred             CChhhHHhhhhcc
Q psy10852        358 SDLPSLLAFYKVH  370 (563)
Q Consensus       358 ~sl~~lv~~y~~~  370 (563)
                      +|+.+||+||.+.
T Consensus        89 ~sl~~LI~~y~~~  101 (103)
T d2c9wa2          89 DSVVHLIDYYVQM  101 (103)
T ss_dssp             SCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhh
Confidence            9999999999864

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.4e-14  Score=109.29  Aligned_cols=58  Identities=28%  Similarity=0.563  Sum_probs=53.0

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ..+++|||+|.++.++||+|++||+|.|+++ +++||+++ .+|+.||||++||+.+...
T Consensus        10 ~~~~~alydy~a~~~~ELs~~~Gd~i~vl~~-~~~ww~g~-~~g~~G~fP~~yve~i~~~   67 (74)
T d1j3ta_          10 NLKAQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGE-VHGGRGWFPKSYVKIIPGS   67 (74)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEE-CSSEEEEE-STTCCCEEEGGGEEECCCS
T ss_pred             CeEEEEccCCCCCCCCEecCCCCCEEEEEEc-cCCeEEEE-ECCcEEEEchhhEEECCCC
Confidence            4589999999999999999999999999988 56899998 6899999999999988664

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.3e-15  Score=111.49  Aligned_cols=59  Identities=31%  Similarity=0.679  Sum_probs=54.5

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  443 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~  443 (563)
                      ..+++|+|+|.++.++||+|++||+|.|+.+.+++||.+++.+|+.||||++||+++.+
T Consensus         8 ~~~v~Alydy~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~vP~~yv~~~~~   66 (67)
T d1awwa_           8 LKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAED   66 (67)
T ss_dssp             CCEEEBSSCCCCSSSSSCCCCSSCEEECCCCCSSSEECCBCTTSCBCCEETTTBCCSCC
T ss_pred             CEEEEECcCCCCCCcCCcCCCCCCEEEEEEEcCCCeEEEEECCCCEEEEcHHHeEECcC
Confidence            45799999999999999999999999999998999999987789999999999988754

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=5e-14  Score=112.23  Aligned_cols=60  Identities=28%  Similarity=0.396  Sum_probs=52.7

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeC--CCCEEEEEeCCeeeeecCCceEEcCCCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTN--INGQWEGELNGKTGHFPFTHVEFIPTNET  542 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~--~~~w~~g~~~g~~G~~P~~~v~~~~~~~~  542 (563)
                      ..+||+|+|.  +++++||+|++||+|.|+++.  +.+||.++++|++||||++||+++.....
T Consensus         6 ~~~rAlydy~--~~~~~ELs~~~Gd~v~Vl~~~~~~~~w~~~~~~g~~G~~P~~Yve~~~~~~~   67 (93)
T d1uffa_           6 SGYRALYPFE--ARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSSEN   67 (93)
T ss_dssp             CCEEESSCBC--CCSSSCCCBCTTCEEEECSSCCCSSSEEEEEETTEEEEEETTTEEECCSSSS
T ss_pred             eEEEECccCC--CCCCCCccCcCCCEEEEEEeccCCCCEEEEEeCCcEEEEchHHEEECCCCCC
Confidence            3789999999  555899999999999999876  47899999999999999999999976543

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.3e-14  Score=107.29  Aligned_cols=60  Identities=33%  Similarity=0.701  Sum_probs=54.1

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecC--CCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE--EHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~--~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ...++|||+|.++.++||+|++||+|.|+.+.+  ++||.+++.+|+.|+||++||+++...
T Consensus         6 l~~~~Alydf~~~~~~eLs~~~Gd~i~vl~~~~~~~~Ww~~~~~~G~~G~vP~~yv~~~~~~   67 (71)
T d1u5sa1           6 LHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDG   67 (71)
T ss_dssp             SSEEEESSCCCCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEETTTEEEEEETTSEEECCCS
T ss_pred             cEEEEECccCCCCCCCEeeECCCCEEEEEEcccCCCCeEEEEECCCCEEEEChHHEEECCCC
Confidence            357999999999999999999999999999764  489999878999999999999998664

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.1e-14  Score=105.35  Aligned_cols=54  Identities=28%  Similarity=0.311  Sum_probs=49.5

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEe--CCeeeeecCCceEEc
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFI  537 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~--~g~~G~~P~~~v~~~  537 (563)
                      .++|+++|.  +++++||+|++||+|.|+.+.++|||.|++  +|++||||++||++|
T Consensus         5 ~~rAl~df~--~~~~~eLs~~~Gd~i~v~~~~~~~W~~~~~~~~g~~G~vP~nyve~i   60 (60)
T d1arka_           5 IFRAMYDYM--AADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEAI   60 (60)
T ss_dssp             CEECCSCCC--CSSSSBCCCCTTCEECCSEECSSSEEEEECTTTCCEEEEETTTCEEC
T ss_pred             EEEECccCC--CCCCCCcCCCCCCEEEEEEEcCCCEEEEEECCCCCEEEEcHHHEEEC
Confidence            689999999  556899999999999999999999999987  589999999999976

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.2e-14  Score=109.13  Aligned_cols=57  Identities=30%  Similarity=0.387  Sum_probs=50.8

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCC-CCEEEEEeCCeeeeecCCceEEcCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI-NGQWEGELNGKTGHFPFTHVEFIPT  539 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~-~~w~~g~~~g~~G~~P~~~v~~~~~  539 (563)
                      .+|+|+++|+  +++++||+|++||+|.|+.+.+ +|||.|+.+|++||||++||++|+.
T Consensus        11 ~~~~alydy~--~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~g~~G~~P~~yve~i~~   68 (72)
T d1ugva_          11 RKAKALYACK--AEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFLSG   68 (72)
T ss_dssp             CCEEESSCBC--CCSSSBCCBCTTCEEBSCCBCSSTTEEEEESSSCEEEEEGGGEEECCS
T ss_pred             EEEEEcccCC--CCCCCEecCCCCCEEEEeeccCCCCEEEEEeCCCEEEEchHHEEECCC
Confidence            3689999999  5558899999999999998765 6899999999999999999999964

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.2e-14  Score=105.24  Aligned_cols=58  Identities=34%  Similarity=0.739  Sum_probs=53.1

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEec-CCcEEEEcCCCeEeccC
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYSE  443 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~-~g~~G~~P~~~v~~~~~  443 (563)
                      ..++|+|+|.++.++||+|++||+|.|+++.+++||.++.. +|+.||||++||++...
T Consensus         3 ~~~vAlydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~vP~~yv~~~~s   61 (64)
T d1fmka1           3 TTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDS   61 (64)
T ss_dssp             EEEEESSCBCCCSSSBCCBCTTCEEEESCCCSSSEEEEEETTTCCEEEEEGGGEEETTS
T ss_pred             eEEEECccCCCcCcCCcCCCCCCEEEEEEEcCCCcEEEEECCCCCEEEEehHHeEECcc
Confidence            46899999999999999999999999999999999999864 68999999999998754

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=3.6e-14  Score=106.28  Aligned_cols=60  Identities=42%  Similarity=0.725  Sum_probs=52.8

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEec-CCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD-EEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~-~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ...|+|||+|.++.++||+|++||+|.|+.+. +++||.+++.+|+.||||++||+.+...
T Consensus         6 g~~~~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~W~~~~~~~g~~G~~P~~yve~~~~~   66 (71)
T d1k9aa1           6 GTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREGV   66 (71)
T ss_dssp             TCEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSTTEEEEECTTCCEEEEEGGGEEECCCC
T ss_pred             CCEEEEccCCCCCCCCCccCCCCCEEEEeEeccCCCEEEEEeCCCCEEEEchHHeEEcccC
Confidence            34799999999999999999999999999986 4578899866799999999999987543

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=3.7e-14  Score=118.29  Aligned_cols=57  Identities=18%  Similarity=0.205  Sum_probs=52.4

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT  539 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~  539 (563)
                      ..++|+|+|.  +.+++||+|++||+|.|+++.++|||+|+.+|++||||++||+.+..
T Consensus        15 ~~~~alydy~--a~~~dELs~~~Gd~i~Vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~   71 (118)
T d1ng2a2          15 EPYVAIKAYT--AVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQ   71 (118)
T ss_dssp             EEEEESSCBC--CCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEETTS
T ss_pred             cEEEECcCCC--CCCCCEecCCCCCEEEEeEecCCCeEEEEECCeEEEEehhhEEECCC
Confidence            3688999999  55699999999999999999999999999999999999999999854

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.4e-14  Score=110.14  Aligned_cols=58  Identities=29%  Similarity=0.633  Sum_probs=53.9

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ..++|+|+|.++.++||+|++||+|.|+.+.+++||+|+ .+|+.||||++||+++...
T Consensus        11 ~~~rAlydy~a~~~~eLs~~~Gd~i~v~~~~~~~W~~g~-~~g~~G~~P~~yv~~i~~~   68 (76)
T d1ujya_          11 LIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGT-LNGRTGWFPSNYVREIKSS   68 (76)
T ss_dssp             EEEECCSCBCCSSTTSCCBCSSCCEEESSCCSSSCEEEE-ETTEEEEECTTTSEECCHH
T ss_pred             EEEEECccCCCCCCCCccCCCCCEEEEeEEcCCCEEEEE-ECCcEEEEchHHEEECCCC
Confidence            378999999999999999999999999999999999998 6899999999999988654

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=3.2e-14  Score=105.21  Aligned_cols=58  Identities=34%  Similarity=0.715  Sum_probs=54.3

Q ss_pred             eeeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEeeCCCeeeEEecCceeeccc
Q psy10852        111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  168 (563)
Q Consensus       111 ~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~~~g~~G~fP~~yv~~~~~  168 (563)
                      ..++|+|+|.+++++||+|++||+|.|+++.+.+||.+++.+|+.||||++||+++..
T Consensus         3 ~~v~Alydf~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yV~~~~~   60 (67)
T d1gl5a_           3 EIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKKS   60 (67)
T ss_dssp             SCEEECSCBCCSSSSBCCBCTTCEEEEEECSSSSEEEEECSSSCEEEEETTSEESSTT
T ss_pred             EEEEECCCCCCCCcCCcCCCCCCEEEEEEecCCCcEEEEECCCCEEEEEhHHeEEecC
Confidence            4689999999999999999999999999999999999998899999999999998753

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.5e-14  Score=102.75  Aligned_cols=53  Identities=32%  Similarity=0.382  Sum_probs=43.2

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEeC-CCCEEEEEeCCeeeeecCCceEE
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTN-INGQWEGELNGKTGHFPFTHVEF  536 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~-~~~w~~g~~~g~~G~~P~~~v~~  536 (563)
                      .|+|+++|.  +++++||+|++||+|.|+.+. +++||.|+++|++||||+|||++
T Consensus         2 ~a~Alydy~--a~~~~ELs~~~Gd~v~v~~~~~~~~W~~~~~~g~~G~vP~nyvev   55 (56)
T d1gria1           2 EAIAKYDFK--ATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEM   55 (56)
T ss_dssp             EEEECSCBC--CCSSSCCCBCTTCEEEC------CCEEEEESSSCEEEEEGGGEEC
T ss_pred             EEEEeeCCC--CCCCCCcCCCCCCEEEEEeccCCCCeEEEEECCcEEEEehhhEEE
Confidence            478899998  555889999999999988865 57999999999999999999974

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.2e-14  Score=104.45  Aligned_cols=55  Identities=18%  Similarity=0.231  Sum_probs=48.7

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEeCC---CCEEEEEeCCeeeeecCCceEEcC
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI---NGQWEGELNGKTGHFPFTHVEFIP  538 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~---~~w~~g~~~g~~G~~P~~~v~~~~  538 (563)
                      .++|+++|.  +++++||+|++||+|.|+++.+   .|||.|+.+|++||||++||++++
T Consensus         6 ~v~Alydy~--a~~~~ELs~~~Gd~i~vl~~~~~~~~gW~~g~~~g~~G~~P~~yv~~~P   63 (63)
T d1ycsb2           6 VIYALWDYE--PQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYP   63 (63)
T ss_dssp             EEEESSCBC--CSSTTBCCBCSSCEEEECCCCTTSCSSEEEEEETTEEEEEEGGGEECCC
T ss_pred             EEEEeeCCC--CCCCCCcCCCCCCEEEEEEecCCCCCCEEEEEECCeEEEEchHHhEeCc
Confidence            578999998  5569999999999999998764   479999999999999999998763

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=5.3e-14  Score=100.21  Aligned_cols=55  Identities=25%  Similarity=0.461  Sum_probs=49.3

Q ss_pred             eEEEeecccCCCCCCCCCCCCCEEEEEEecCCC-cEEEEecCCcEEEEcCCCeEecc
Q psy10852        387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH-WWTAQNISGEVGSIPVPYVQKYS  442 (563)
Q Consensus       387 ~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~-W~~~~~~~g~~G~~P~~~v~~~~  442 (563)
                      .++|||+|.++.++||+|++||+|.|+++.+++ ||.++ .+|+.||||++||+++.
T Consensus         2 ~~vAlydy~a~~~~eLs~~~Gd~i~vl~~~~~~~W~~~~-~~g~~G~~P~~yv~~vd   57 (57)
T d1opka1           2 LFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQ-TKNGQGWVPSNYITPVN   57 (57)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEECTTSSEEEEE-CSSCEEEEEGGGEEESS
T ss_pred             EEEECccCCCCCcCCcCCCCCCEEEEeEecCCCCEEEEE-ECCCEeEEchhheEECC
Confidence            579999999999999999999999999987665 77787 68999999999999863

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.1e-14  Score=106.44  Aligned_cols=58  Identities=34%  Similarity=0.709  Sum_probs=52.5

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ...++|+|+|.++.++||+|++||+|.|+.+. ++||+++ .+|+.||||++||+++...
T Consensus         8 ~~~~vAl~~y~~~~~~eLs~~~Gd~v~vl~~~-~~Ww~~~-~~g~~G~vP~~yv~~~~~~   65 (69)
T d1uhfa_           8 GEEYIALYPYSSVEPGDLTFTEGEEILVTQKD-GEWWTGS-IGDRSGIFPSNYVKPKDSG   65 (69)
T ss_dssp             SEEEECSSCBCCSSSSBCCBCTTCEEEECEEE-TTEEEEC-STTCCEEECGGGCEECCCC
T ss_pred             CcEEEECccCCCCCcCCcCCCCCCEEEEEEec-CCEEEEE-ECCcEEEEchhhEEECCCC
Confidence            45899999999999999999999999999875 5899997 6899999999999988654

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=3.8e-14  Score=107.20  Aligned_cols=60  Identities=8%  Similarity=0.166  Sum_probs=54.1

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEec-----CCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-----SGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~-----~g~~G~~P~~~v~~~~~~  444 (563)
                      ...++|||+|.+..++||+|.+||+|.|+++.+++||++++.     +|+.||||++||+++...
T Consensus         7 g~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~v~~~~~~~~~g~~G~vP~~yve~~~~p   71 (74)
T d1wfwa_           7 GSTMTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSILAPFSGP   71 (74)
T ss_dssp             SCEEECCSCBCCCSSSCCCBCTTCEEEEEEECTTSEEEEEECSCSSSSSEEEEEEGGGCCBCCST
T ss_pred             CCEEEEeEEECCCCCCCccCccCCEEEEEEEcCCCCEEEEeCccCCcCCeeeEEchHHeEECCCC
Confidence            457999999999999999999999999999999999999753     478999999999988654

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.4e-14  Score=107.25  Aligned_cols=59  Identities=31%  Similarity=0.679  Sum_probs=55.0

Q ss_pred             ceeeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEeeCCCeeeEEecCceeeccc
Q psy10852        110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  168 (563)
Q Consensus       110 ~~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~~~g~~G~fP~~yv~~~~~  168 (563)
                      ..+++|+|+|.++.++||+|++||+|.|+++.+++||.+++.+|+.|+||++||+++++
T Consensus         8 ~~~v~Alydy~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~vP~~yv~~~~~   66 (67)
T d1awwa_           8 LKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAED   66 (67)
T ss_dssp             CCEEEBSSCCCCSSSSSCCCCSSCEEECCCCCSSSEECCBCTTSCBCCEETTTBCCSCC
T ss_pred             CEEEEECcCCCCCCcCCcCCCCCCEEEEEEEcCCCeEEEEECCCCEEEEcHHHeEECcC
Confidence            45789999999999999999999999999999999999998899999999999998764

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.46  E-value=3.7e-14  Score=104.68  Aligned_cols=57  Identities=32%  Similarity=0.765  Sum_probs=51.1

Q ss_pred             ceeeeecccCCCCCCC-CCcCCCCCEEEEEEecC-----CCeeEEeeCCCeeeEEecCceeec
Q psy10852        110 IEKVIAKYDFDGNDPD-DLPFKKNDILIVVSKDE-----EHWWTAQNISGEVGSIPVPYVQKY  166 (563)
Q Consensus       110 ~~~~~a~~d~~~~~~~-eLs~~~Gd~i~vl~~~~-----~~ww~g~~~~g~~G~fP~~yv~~~  166 (563)
                      ...++|+|+|.+++++ ||+|++||+|.|+++.+     ++||.|++.+|++|+||+|||+.+
T Consensus         5 ~~~~~Alydy~~~~~~~ELs~~~Gd~i~vl~~~d~~~~~~~Ww~g~~~~G~~G~~P~nyve~i   67 (67)
T d2v1ra1           5 LEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII   67 (67)
T ss_dssp             CEEEEESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECTTSCEEEEEGGGEEEC
T ss_pred             CEEEEECccCCCCCCCCEeCCCCCCEEEEEEeecCCCcCCCeEEEEeCCCCEEEEEHHHEEEC
Confidence            4679999999998875 99999999999999875     489999988999999999999864

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=4.1e-14  Score=101.68  Aligned_cols=57  Identities=26%  Similarity=0.608  Sum_probs=52.2

Q ss_pred             eeeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEeeCCCeeeEEecCceeeccc
Q psy10852        111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE  168 (563)
Q Consensus       111 ~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~~~g~~G~fP~~yv~~~~~  168 (563)
                      +.++|+|||.+++++||+|++||+|.|+++. ++||.+++.+|+.|+||+|||+.+..
T Consensus         2 ~~a~alydf~a~~~~ELs~~~Gd~i~v~~~~-~~ww~~~~~~g~~G~~P~nyve~i~~   58 (59)
T d1i07a_           2 KYAKSKYDFVARNSSELSVMKDDVLEILDDR-RQWWKVRNASGDSGFVPNNILDIMRT   58 (59)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEECGGG-CCEEEEECTTSCEEEEEGGGEEEECC
T ss_pred             eEEEEccCCCCCCCCeeeEcCCCEEEEEEEc-CCcEEEEEcCCCEEEECHHHeEECCC
Confidence            4689999999999999999999999999875 58999998999999999999998853

>d1fu6a_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phosphatidylinositol 3-kinase, p85-alpha subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=2.1e-14  Score=118.54  Aligned_cols=95  Identities=27%  Similarity=0.516  Sum_probs=77.4

Q ss_pred             CCCCCccccccCHHHHHHHHhcCCCCCcEEEEecCCC-CcceEEEEEeCCeeEEEEEeeecCCCcceeEEeC-CcccCCh
Q psy10852        283 HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTI-LGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDL  360 (563)
Q Consensus       283 ~~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~-~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~-~~~f~sl  360 (563)
                      ...++||||.|+|++|+.+|... .+|+||||.|++. ++.|+|+++.++.+.|++|...+..     |.+. ...|+|+
T Consensus         8 l~~~~WyhG~isR~eAe~lL~~~-~~G~FLVR~S~~~~~~~~~ls~~~~~~~~H~~I~~~~~~-----~~~~~~~~F~sl   81 (111)
T d1fu6a_           8 LQDAEWYWGDISREEVNEKLRDT-ADGTFLVRDASTKMHGDYTLTLRKGGNNKSIKIFHRDGK-----YGFSDPLTFNSV   81 (111)
T ss_dssp             CSCCSSCCSSCCSHHHHHHSSSC-SSCCCCCBSSCCSSSCCSBCEEEETTEEEECCCCCTTTC-----CCTTTTSCCCCT
T ss_pred             cCcCcCCCCCCCHHHHHHHhCcC-CCCEEEEEeccCCCCccEEEEEecCCceEEEEEEEcCCe-----EEECCCcccCCH
Confidence            34569999999999999999764 4799999998765 4689999999999999999875443     7776 4789999


Q ss_pred             hhHHhhhhcccCCC------Ccccccccc
Q psy10852        361 PSLLAFYKVHYLDT------SPLIKPATK  383 (563)
Q Consensus       361 ~~lv~~y~~~~~~~------~~l~~P~~~  383 (563)
                      .+||+||+++++..      +.|..|+++
T Consensus        82 ~~LV~~y~~~~l~~~~~~l~~~L~~Pv~r  110 (111)
T d1fu6a_          82 VELINHYRNESLAQYNPKLDVKLLYPVSK  110 (111)
T ss_dssp             THHHHHHHTTCSTTTCSSCCCCSCCCCCC
T ss_pred             HHHHHHHhhCcCCccCCCCccccCccccC
Confidence            99999999887542      456677653

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=7e-14  Score=110.16  Aligned_cols=61  Identities=13%  Similarity=0.133  Sum_probs=53.7

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCC----CCEEEEEeCCeeeeecCCceEEcCCCCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI----NGQWEGELNGKTGHFPFTHVEFIPTNETS  543 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~----~~w~~g~~~g~~G~~P~~~v~~~~~~~~~  543 (563)
                      ..++|+++|.  ++.++||+|++||+|.|+++.+    .|||+++.+|++||||++||+++......
T Consensus        18 ~~~~a~~~f~--a~~~~eLs~~~Gd~v~vl~~~d~~~~~~Ww~~~~~g~~G~~P~~yv~~~~~~~~~   82 (92)
T d1ug1a_          18 KLFQAERNFN--AAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNPRRSH   82 (92)
T ss_dssp             GEEEESSCCC--CCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEECSSSEEEEEGGGEEECCCCSSC
T ss_pred             eEEEEcCCcC--CCCCCeEEEecccEEEEEEcccccccCCceEEEecccEEEEEhhhceecCCcccc
Confidence            4689999998  5569999999999999999864    78999999999999999999998766553

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.2e-13  Score=108.80  Aligned_cols=59  Identities=15%  Similarity=0.315  Sum_probs=53.3

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecC----CCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE----EHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~----~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ...|+|+|+|.++.++||+|++||+|.|+++.|    .+||+++ .+|+.||||++||+++...
T Consensus        17 ~~~~~a~~~f~a~~~~eLs~~~Gd~v~vl~~~d~~~~~~Ww~~~-~~g~~G~~P~~yv~~~~~~   79 (92)
T d1ug1a_          17 EKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLID-NGVTKGFVYSSFLKPYNPR   79 (92)
T ss_dssp             GGEEEESSCCCCCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEE-CSSSEEEEEGGGEEECCCC
T ss_pred             CeEEEEcCCcCCCCCCeEEEecccEEEEEEcccccccCCceEEE-ecccEEEEEhhhceecCCc
Confidence            347899999999999999999999999999864    6899998 6899999999999998754

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=5.5e-15  Score=110.66  Aligned_cols=60  Identities=27%  Similarity=0.433  Sum_probs=54.0

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      .++++|||+|.++.++||+|.+||+|.|+++.+++||.|+..+++.||||++||+++...
T Consensus         6 ~~~v~Aly~f~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~~~G~fP~~yv~~~~~~   65 (71)
T d2hspa_           6 KCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVNP   65 (71)
T ss_dssp             SSCEECCSCCCCSSSSSCCCCTTCEEBSCCCBTTTEECCBCSSCCSCCEETTTCCSCSCC
T ss_pred             cEEEEEcccCCcCCcCCccCCCCCEEEEEEecCCCEEEEEECCeEEEEEchHHeEEcCCc
Confidence            568999999999999999999999999999999999999855677779999999988653

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=4.5e-14  Score=105.93  Aligned_cols=57  Identities=19%  Similarity=0.313  Sum_probs=48.8

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEeC-CCCEEEEEeC--CeeeeecCCceEEcCC
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTN-INGQWEGELN--GKTGHFPFTHVEFIPT  539 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~-~~~w~~g~~~--g~~G~~P~~~v~~~~~  539 (563)
                      +++|+|+|.++. +++||+|++||+|.|+... ++|||.|+++  |++||||++||+.|+.
T Consensus         9 ~~~Alydy~~~~-~~deLsf~~Gd~i~vl~~~~~~gW~~g~~~~~g~~G~fP~nyVe~i~~   68 (72)
T d1spka_           9 KVKTIFPHTAGN-NKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLSG   68 (72)
T ss_dssp             EEECSSCBCCSS-CSSBCCBCTTCEEEECCSSCBTTEEEEEETTTCCEEEEEGGGCEECSS
T ss_pred             EEEEeeccCCCC-CCCEeeEcCCCEEEEEEeecCCCeEEEEECCCCCEEEEchhhEEECCC
Confidence            689999998432 5789999999999998654 4789999985  7999999999999964

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=4e-14  Score=103.01  Aligned_cols=55  Identities=24%  Similarity=0.675  Sum_probs=49.5

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEecC---CCcEEEEecCCcEEEEcCCCeEec
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE---EHWWTAQNISGEVGSIPVPYVQKY  441 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~---~~W~~~~~~~g~~G~~P~~~v~~~  441 (563)
                      ..++|||+|.++.++||+|++||+|.|+.+.+   .|||.|+ .+|+.|+||++||+.+
T Consensus         5 g~v~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~gW~~g~-~~g~~G~~P~~yv~~~   62 (63)
T d1ycsb2           5 GVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWAR-LNDKEGYVPRNLLGLY   62 (63)
T ss_dssp             GEEEESSCBCCSSTTBCCBCSSCEEEECCCCTTSCSSEEEEE-ETTEEEEEEGGGEECC
T ss_pred             CEEEEeeCCCCCCCCCcCCCCCCEEEEEEecCCCCCCEEEEE-ECCeEEEEchHHhEeC
Confidence            36889999999999999999999999998764   3799998 5899999999999865

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=5.5e-14  Score=117.22  Aligned_cols=59  Identities=20%  Similarity=0.399  Sum_probs=55.1

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ...++|||+|.++.++||+|++||+|.|+.+.++|||+|+ .+|+.||||++||+.+...
T Consensus        14 g~~~~alydy~a~~~dELs~~~Gd~i~Vl~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~~   72 (118)
T d1ng2a2          14 GEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIR-KDDVTGYFPSMYLQKSGQD   72 (118)
T ss_dssp             CEEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEE-ETTEEEEEEGGGEEETTSC
T ss_pred             CcEEEECcCCCCCCCCEecCCCCCEEEEeEecCCCeEEEE-ECCeEEEEehhhEEECCCc
Confidence            5689999999999999999999999999999999999998 6899999999999988654

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=9.5e-14  Score=106.16  Aligned_cols=58  Identities=17%  Similarity=0.202  Sum_probs=51.5

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeC----CCCEEEEEeCCeeeeecCCceEEcCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTN----INGQWEGELNGKTGHFPFTHVEFIPTN  540 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~----~~~w~~g~~~g~~G~~P~~~v~~~~~~  540 (563)
                      .+++|+++|.  ++.++||+|++||+|.|+++.    ++|||.|+.+|++||||++||+.++..
T Consensus        14 ~~~~Alydy~--a~~~~ELs~~~Gd~i~vl~~~~~~~~~~W~~g~~~g~~G~vP~~yv~~~~~~   75 (79)
T d1uhca_          14 QVYFAVYTFK--ARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTESG   75 (79)
T ss_dssp             CCEEESSCBC--CCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEESSSCEEEEEGGGEEECCSS
T ss_pred             EEEEECccCC--CCCCCCccCCCCCEEEEEEeecCCCCCCEEEEEECCCEEEEehhhEEECCCC
Confidence            3789999999  556899999999999999875    379999999999999999999998754

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=3.7e-14  Score=105.06  Aligned_cols=56  Identities=20%  Similarity=0.232  Sum_probs=49.8

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCCeeeeecCCceEEcCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT  539 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g~~G~~P~~~v~~~~~  539 (563)
                      ..++|+++|.  +..++||+|++||+|.|+++ +++||.++++|++||||++||++++.
T Consensus         9 ~~~vAl~~y~--~~~~~eLs~~~Gd~v~vl~~-~~~Ww~~~~~g~~G~vP~~yv~~~~~   64 (69)
T d1uhfa_           9 EEYIALYPYS--SVEPGDLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYVKPKDS   64 (69)
T ss_dssp             EEEECSSCBC--CSSSSBCCBCTTCEEEECEE-ETTEEEECSTTCCEEECGGGCEECCC
T ss_pred             cEEEECccCC--CCCcCCcCCCCCCEEEEEEe-cCCEEEEEECCcEEEEchhhEEECCC
Confidence            3678999998  55689999999999999987 56899999999999999999998864

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=8.3e-14  Score=106.48  Aligned_cols=58  Identities=28%  Similarity=0.695  Sum_probs=52.7

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEecC----CCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE----EHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~----~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ..++|||+|.++.++||+|++||+|.|+.+.+    ++||+++ .+|+.||||++||+++...
T Consensus        14 ~~~~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~~~W~~g~-~~g~~G~vP~~yv~~~~~~   75 (79)
T d1uhca_          14 QVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAE-VNGKKGYVPSNYIRKTESG   75 (79)
T ss_dssp             CCEEESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEE-SSSCEEEEEGGGEEECCSS
T ss_pred             EEEEECccCCCCCCCCccCCCCCEEEEEEeecCCCCCCEEEEE-ECCCEEEEehhhEEECCCC
Confidence            46899999999999999999999999998753    5899998 7899999999999998764

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=3.9e-14  Score=106.24  Aligned_cols=59  Identities=24%  Similarity=0.430  Sum_probs=52.5

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecC-CCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE-EHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~-~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ..+|+|||+|.++.++||+|++||+|.|+.+.+ ++||.++ .+|+.||||++||+.+...
T Consensus        10 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~-~~g~~G~~P~~yve~i~~p   69 (72)
T d1ugva_          10 FRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGT-LNGKTGLIPENYVEFLSGP   69 (72)
T ss_dssp             CCCEEESSCBCCCSSSBCCBCTTCEEBSCCBCSSTTEEEEE-SSSCEEEEEGGGEEECCSS
T ss_pred             CEEEEEcccCCCCCCCEecCCCCCEEEEeeccCCCCEEEEE-eCCCEEEEchHHEEECCCC
Confidence            357999999999999999999999999998865 4688997 7899999999999988653

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.9e-13  Score=108.72  Aligned_cols=58  Identities=28%  Similarity=0.531  Sum_probs=52.2

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEecC--CCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE--EHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~--~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ..++|||+|.++.++||+|++||+|.|+.+.+  .+||.++ .+|+.||||++||+.+...
T Consensus         6 ~~~rAlydy~~~~~~ELs~~~Gd~v~Vl~~~~~~~~w~~~~-~~g~~G~~P~~Yve~~~~~   65 (93)
T d1uffa_           6 SGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGS-FQGNFGWFPCNYVEKMPSS   65 (93)
T ss_dssp             CCEEESSCBCCCSSSCCCBCTTCEEEECSSCCCSSSEEEEE-ETTEEEEEETTTEEECCSS
T ss_pred             eEEEECccCCCCCCCCccCcCCCEEEEEEeccCCCCEEEEE-eCCcEEEEchHHEEECCCC
Confidence            47899999999999999999999999998864  5689987 7999999999999988754

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.2e-13  Score=98.85  Aligned_cols=55  Identities=35%  Similarity=0.740  Sum_probs=50.9

Q ss_pred             eeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEee-CCCeeeEEecCceeec
Q psy10852        112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKY  166 (563)
Q Consensus       112 ~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~-~~g~~G~fP~~yv~~~  166 (563)
                      .++|+|||.+++++||+|++||+|.|+++.+++||.+++ .+|+.|+||++||+++
T Consensus         2 l~vAl~dy~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~vP~~yv~pv   57 (57)
T d1efna_           2 LFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV   57 (57)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECSSCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             EEEECCCCCCCCcCCcCCCCCCEEEEEEecCCCCEEEEECCCCCEEEEeHHHeEEC
Confidence            368999999999999999999999999999999999987 5789999999999874

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=7.9e-14  Score=98.90  Aligned_cols=53  Identities=40%  Similarity=0.863  Sum_probs=44.5

Q ss_pred             eEEEeecccCCCCCCCCCCCCCEEEEEEec-CCCcEEEEecCCcEEEEcCCCeEe
Q psy10852        387 KVIAKYDFDGNDPDDLPFKKNDILIVVSKD-EEHWWTAQNISGEVGSIPVPYVQK  440 (563)
Q Consensus       387 ~~~a~~~y~~~~~~el~~~~g~~v~v~~~~-~~~W~~~~~~~g~~G~~P~~~v~~  440 (563)
                      .|+|+|+|.++.++||+|++||+|.|+.+. +++||.|+ .+|+.||||+|||+.
T Consensus         2 ~a~Alydy~a~~~~ELs~~~Gd~v~v~~~~~~~~W~~~~-~~g~~G~vP~nyvev   55 (56)
T d1gria1           2 EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAE-LNGKDGFIPKNYIEM   55 (56)
T ss_dssp             EEEECSCBCCCSSSCCCBCTTCEEEC------CCEEEEE-SSSCEEEEEGGGEEC
T ss_pred             EEEEeeCCCCCCCCCcCCCCCCEEEEEeccCCCCeEEEE-ECCcEEEEehhhEEE
Confidence            589999999999999999999999999875 46788887 799999999999973

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=7.1e-14  Score=104.81  Aligned_cols=59  Identities=19%  Similarity=0.357  Sum_probs=50.2

Q ss_pred             eeeEEEeecccCC-CCCCCCCCCCCEEEEEEec-CCCcEEEEec-CCcEEEEcCCCeEeccC
Q psy10852        385 IEKVIAKYDFDGN-DPDDLPFKKNDILIVVSKD-EEHWWTAQNI-SGEVGSIPVPYVQKYSE  443 (563)
Q Consensus       385 ~~~~~a~~~y~~~-~~~el~~~~g~~v~v~~~~-~~~W~~~~~~-~g~~G~~P~~~v~~~~~  443 (563)
                      ..+|+|||+|.+. .++||+|++||+|.|+.+. +++||.|++. +|+.||||++||+.+..
T Consensus         7 ~~~~~Alydy~~~~~~deLsf~~Gd~i~vl~~~~~~gW~~g~~~~~g~~G~fP~nyVe~i~~   68 (72)
T d1spka_           7 GQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLSG   68 (72)
T ss_dssp             SCEEECSSCBCCSSCSSBCCBCTTCEEEECCSSCBTTEEEEEETTTCCEEEEEGGGCEECSS
T ss_pred             CCEEEEeeccCCCCCCCEeeEcCCCEEEEEEeecCCCeEEEEECCCCCEEEEchhhEEECCC
Confidence            4579999999985 5788999999999999765 4679999753 58999999999999865

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.5e-13  Score=102.81  Aligned_cols=59  Identities=32%  Similarity=0.675  Sum_probs=53.8

Q ss_pred             ceeeeecccCCCCCCCCCcCCCCCEEEEEEecC--CCeeEEeeCCCeeeEEecCceeeccc
Q psy10852        110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE--EHWWTAQNISGEVGSIPVPYVQKYSE  168 (563)
Q Consensus       110 ~~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~--~~ww~g~~~~g~~G~fP~~yv~~~~~  168 (563)
                      ...++|+|+|.++.++||+|++||+|.|+++.+  ++||.+++.+|+.|+||++||+.+..
T Consensus         6 l~~~~Alydf~~~~~~eLs~~~Gd~i~vl~~~~~~~~Ww~~~~~~G~~G~vP~~yv~~~~~   66 (71)
T d1u5sa1           6 LHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSD   66 (71)
T ss_dssp             SSEEEESSCCCCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEETTTEEEEEETTSEEECCC
T ss_pred             cEEEEECccCCCCCCCEeeECCCCEEEEEEcccCCCCeEEEEECCCCEEEEChHHEEECCC
Confidence            456899999999999999999999999999754  48999999999999999999999864

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=4e-14  Score=108.63  Aligned_cols=60  Identities=28%  Similarity=0.428  Sum_probs=53.1

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEec---------------CCCcEEEEec-CCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD---------------EEHWWTAQNI-SGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~---------------~~~W~~~~~~-~g~~G~~P~~~v~~~~~~  444 (563)
                      +.+++|||+|.++.++||+|++||+|.|+.+.               ++|||+|++. +|+.||||++||+.+...
T Consensus         3 G~~~raly~y~~~~~~eLs~~~Gd~i~V~~~~~~~~~~~~~~~~~~~~~GW~~G~~~~~g~~G~FP~nYVe~i~~~   78 (83)
T d1phta_           3 GYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYIGRK   78 (83)
T ss_dssp             EEEEEECSCBCCSSTTBCCBCTTCEEEEEHHHHHTTTCCTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEEEEE
T ss_pred             CCEEEEcCccCCCCCCcccccCCCEEEEEeccccccccccccccccCCCCeEEEEECCCCcEeeEehhhEEEcCCc
Confidence            45899999999999999999999999999753               3689999864 799999999999988654

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.6e-14  Score=108.13  Aligned_cols=60  Identities=23%  Similarity=0.275  Sum_probs=51.6

Q ss_pred             ccceEEeecCCCCCCCCCCeeccCCCEEEEEEeCCCCEEEEEeCC-eeeeecCCceEEcCCCC
Q psy10852        480 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNG-KTGHFPFTHVEFIPTNE  541 (563)
Q Consensus       480 ~~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~~~w~~g~~~g-~~G~~P~~~v~~~~~~~  541 (563)
                      .++++|+++|.  +.+++||+|++||+|.|+++.++|||.|+++| +.||||++||+.+.+..
T Consensus         6 ~~~v~Aly~f~--a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~~~G~fP~~yv~~~~~~~   66 (71)
T d2hspa_           6 KCAVKALFDYK--AQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVNPE   66 (71)
T ss_dssp             SSCEECCSCCC--CSSSSSCCCCTTCEEBSCCCBTTTEECCBCSSCCSCCEETTTCCSCSCCC
T ss_pred             cEEEEEcccCC--cCCcCCccCCCCCEEEEEEecCCCEEEEEECCeEEEEEchHHeEEcCCcc
Confidence            45789999998  55689999999999999999999999999865 45599999999886543

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.5e-13  Score=100.70  Aligned_cols=59  Identities=34%  Similarity=0.718  Sum_probs=53.8

Q ss_pred             ceeeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEee-CCCeeeEEecCceeeccc
Q psy10852        110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKYSE  168 (563)
Q Consensus       110 ~~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~-~~g~~G~fP~~yv~~~~~  168 (563)
                      +..++|+|||.++.++||+|++||+|.|+++.+++||.+++ .+|+.|+||.+||++.+.
T Consensus         2 ~~~~vAlydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~vP~~yv~~~~s   61 (64)
T d1fmka1           2 VTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDS   61 (64)
T ss_dssp             CEEEEESSCBCCCSSSBCCBCTTCEEEESCCCSSSEEEEEETTTCCEEEEEGGGEEETTS
T ss_pred             eeEEEECccCCCcCcCCcCCCCCCEEEEEEEcCCCcEEEEECCCCCEEEEehHHeEECcc
Confidence            35689999999999999999999999999999999999987 468999999999998763

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.2e-13  Score=109.27  Aligned_cols=63  Identities=27%  Similarity=0.419  Sum_probs=51.4

Q ss_pred             ccceEEeecCCCCC----CCCCCeeccCCCEEEEEEeCC-CCEEEEEe-CCeeeeecCCceEEcCCCCC
Q psy10852        480 PAFARVKQVRVPNA----YDKTALKLEIGDIIKVTKTNI-NGQWEGEL-NGKTGHFPFTHVEFIPTNET  542 (563)
Q Consensus       480 ~~~~~~~~~y~~~~----~~~~eL~~~~gd~i~v~~~~~-~~w~~g~~-~g~~G~~P~~~v~~~~~~~~  542 (563)
                      ..+|+|+|+|.++.    ..++||+|++||+|.|+.+.+ +|||.++. +|++||||++||+.+.+...
T Consensus        17 ~~~~~Alydy~~~~~~~~~~e~ELsf~~Gd~i~v~~~~~~~gW~~~~~~~G~~G~~P~nyve~~~~~~~   85 (96)
T d1wiea_          17 VHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFVQDNES   85 (96)
T ss_dssp             EEEEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEETTCCBCBCCTTSEECCCSCCC
T ss_pred             ceEEEEeeeecCcccCCCCCCcEeeEcCCCEEEEEEeeCCCceEEEEeCCCCEEEEehHHeEECCCccc
Confidence            45789999998532    235799999999999998765 67888874 79999999999999976654

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=2.4e-13  Score=96.74  Aligned_cols=55  Identities=25%  Similarity=0.461  Sum_probs=48.8

Q ss_pred             eeeecccCCCCCCCCCcCCCCCEEEEEEecCCC-eeEEeeCCCeeeEEecCceeecc
Q psy10852        112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH-WWTAQNISGEVGSIPVPYVQKYS  167 (563)
Q Consensus       112 ~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~-ww~g~~~~g~~G~fP~~yv~~~~  167 (563)
                      .++|+|+|.++.++||+|++||+|.|+++.+++ ||.++ .+|++||||++||++++
T Consensus         2 ~~vAlydy~a~~~~eLs~~~Gd~i~vl~~~~~~~W~~~~-~~g~~G~~P~~yv~~vd   57 (57)
T d1opka1           2 LFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQ-TKNGQGWVPSNYITPVN   57 (57)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEECTTSSEEEEE-CSSCEEEEEGGGEEESS
T ss_pred             EEEECccCCCCCcCCcCCCCCCEEEEeEecCCCCEEEEE-ECCCEeEEchhheEECC
Confidence            479999999999999999999999999987765 66676 78899999999999863

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=4.3e-14  Score=108.46  Aligned_cols=58  Identities=29%  Similarity=0.366  Sum_probs=50.0

Q ss_pred             ceEEeecCCCCCCCCCCeeccCCCEEEEEEeC---------------CCCEEEEEe--CCeeeeecCCceEEcCCCC
Q psy10852        482 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTN---------------INGQWEGEL--NGKTGHFPFTHVEFIPTNE  541 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~---------------~~~w~~g~~--~g~~G~~P~~~v~~~~~~~  541 (563)
                      .++|+|+|.  +.+++||+|++||+|.|+.+.               ++|||+|+.  +|++||||++||+.|....
T Consensus         5 ~~raly~y~--~~~~~eLs~~~Gd~i~V~~~~~~~~~~~~~~~~~~~~~GW~~G~~~~~g~~G~FP~nYVe~i~~~~   79 (83)
T d1phta_           5 QYRALYDYK--KEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYIGRKK   79 (83)
T ss_dssp             EEEECSCBC--CSSTTBCCBCTTCEEEEEHHHHHTTTCCTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEEEEEE
T ss_pred             EEEEcCccC--CCCCCcccccCCCEEEEEeccccccccccccccccCCCCeEEEEECCCCcEeeEehhhEEEcCCcC
Confidence            689999999  555899999999999999753               368999986  6999999999999996543

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.1e-13  Score=107.83  Aligned_cols=61  Identities=18%  Similarity=0.472  Sum_probs=52.4

Q ss_pred             ceeeEEEeecccCCC------CCCCCCCCCCEEEEEEecC-CCcEEEEecCCcEEEEcCCCeEeccCC
Q psy10852        384 TIEKVIAKYDFDGND------PDDLPFKKNDILIVVSKDE-EHWWTAQNISGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       384 ~~~~~~a~~~y~~~~------~~el~~~~g~~v~v~~~~~-~~W~~~~~~~g~~G~~P~~~v~~~~~~  444 (563)
                      ....|+|+|+|.++.      ++||+|++||+|.|+.+.+ ++||.+...+|+.||||++||+++...
T Consensus        16 ~~~~~~Alydy~~~~~~~~~~e~ELsf~~Gd~i~v~~~~~~~gW~~~~~~~G~~G~~P~nyve~~~~~   83 (96)
T d1wiea_          16 KVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFVQDN   83 (96)
T ss_dssp             CEEEEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEETTCCBCBCCTTSEECCCSC
T ss_pred             CceEEEEeeeecCcccCCCCCCcEeeEcCCCEEEEEEeeCCCceEEEEeCCCCEEEEehHHeEECCCc
Confidence            467899999998754      5799999999999998765 468888767999999999999988765

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.4e-13  Score=100.85  Aligned_cols=58  Identities=43%  Similarity=0.795  Sum_probs=52.2

Q ss_pred             eeeeecccCCCCCCCCCcCCCCCEEEEEEec-CCCeeEEeeCCCeeeEEecCceeeccc
Q psy10852        111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKD-EEHWWTAQNISGEVGSIPVPYVQKYSE  168 (563)
Q Consensus       111 ~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~-~~~ww~g~~~~g~~G~fP~~yv~~~~~  168 (563)
                      ..|+|+|+|.+++++||+|++||+|.|+++. +++||.+++..|+.|+||.+||++++.
T Consensus         7 ~~~~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~W~~~~~~~g~~G~~P~~yve~~~~   65 (71)
T d1k9aa1           7 TECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREG   65 (71)
T ss_dssp             CEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSTTEEEEECTTCCEEEEEGGGEEECCC
T ss_pred             CEEEEccCCCCCCCCCccCCCCCEEEEeEeccCCCEEEEEeCCCCEEEEchHHeEEccc
Confidence            4699999999999999999999999999986 557899987779999999999998753

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=2.9e-13  Score=99.93  Aligned_cols=55  Identities=27%  Similarity=0.507  Sum_probs=46.2

Q ss_pred             eEEEeecccC------CCCCCCCCCCCCEEEEEEec-CCCcEEEEec-CCcEEEEcCCCeEec
Q psy10852        387 KVIAKYDFDG------NDPDDLPFKKNDILIVVSKD-EEHWWTAQNI-SGEVGSIPVPYVQKY  441 (563)
Q Consensus       387 ~~~a~~~y~~------~~~~el~~~~g~~v~v~~~~-~~~W~~~~~~-~g~~G~~P~~~v~~~  441 (563)
                      +++|+++|.+      +.++||+|++||+|.|+++. ++|||+|++. +|+.||||++||++.
T Consensus         6 k~~a~~~y~~~~~~~~~~~~eLsf~~GD~i~Vl~~~~~~gWw~G~~~~~g~~G~fP~nyVePy   68 (69)
T d1gcqc_           6 KMEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY   68 (69)
T ss_dssp             EEEECSCBSSSSCCGGGCSCBCCBCTTCEEEEEECCTTCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             cEEEeeeEeccCCCCCCCCCEeeEcCCCEEEEEEEecCCCEEEEEECCCCCEEEEeHHHEEEc
Confidence            4566666654      77889999999999999864 6799999864 799999999999985

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.6e-13  Score=98.73  Aligned_cols=55  Identities=33%  Similarity=0.630  Sum_probs=48.1

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEe-cCCcEEEEcCCCeEe
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQK  440 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~-~~g~~G~~P~~~v~~  440 (563)
                      ...++|||+|.++.++||+|++||+|.|+++.+ +||.+.. .+|+.||||++||++
T Consensus         6 ~~~~~al~dy~a~~~~eLs~~~Gd~i~v~~~~~-~ww~~~~~~~g~~G~~P~~yV~~   61 (62)
T d2iima1           6 DNLVIALHSYEPSHDGDLGFEKGEQLRILEQSG-EWWKAQSLTTGQEGFIPFNFVAK   61 (62)
T ss_dssp             TCEEEESSCBCCCSTTBCCBCTTCEEEEEECCS-SEEEEEETTTCCEEEEEGGGEEE
T ss_pred             CcEEEECCCCCcCCcCCcCCCCCCEEEEeEEcC-CCEEEEeccCCeEeEEcHHHEEe
Confidence            347999999999999999999999999998875 5777654 478999999999975

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.38  E-value=2.3e-13  Score=96.87  Aligned_cols=52  Identities=23%  Similarity=0.305  Sum_probs=44.3

Q ss_pred             eEEeecCCCCCCCCCCeeccCCCEEEEEEeCC-CCEEEEEe--CCeeeeecCCceEE
Q psy10852        483 ARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI-NGQWEGEL--NGKTGHFPFTHVEF  536 (563)
Q Consensus       483 ~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~-~~w~~g~~--~g~~G~~P~~~v~~  536 (563)
                      +||+++|.  +++++||+|++||+|.|+++.+ ++||.++.  +|++||||++||++
T Consensus         2 aralydf~--a~~~~ELs~~~Gd~i~v~~~~~~~~w~~~~~~~~g~~G~~P~nyvev   56 (56)
T d1zuua1           2 NKVLYAYV--QKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIRI   56 (56)
T ss_dssp             CEECSCBC--CCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEEC
T ss_pred             CEEeeeeC--CCCCCEeeECCCCEEEEEEEecCCCcEEEeCCCCceEEEEehhhEEC
Confidence            79999999  5558999999999999999876 56676654  58999999999984

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.37  E-value=1.7e-13  Score=105.83  Aligned_cols=57  Identities=23%  Similarity=0.240  Sum_probs=48.4

Q ss_pred             ccceEEeecCCCCCCCCCCeeccCCCEEEEEEeCC-----CCEEEEEe----------CCeeeeecCCceEEcC
Q psy10852        480 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI-----NGQWEGEL----------NGKTGHFPFTHVEFIP  538 (563)
Q Consensus       480 ~~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~~-----~~w~~g~~----------~g~~G~~P~~~v~~~~  538 (563)
                      ..+|+|+|+|.  +++++||+|++||+|.|+.+.+     +|||.|..          +|+.||||+|||+.|+
T Consensus        12 ~~~~~Alydy~--a~~~~ELs~~~Gd~i~Vl~~~~~~~~~dgWw~G~~~~~~~~~~~~~g~~G~fP~nyVe~ie   83 (83)
T d1bb9a_          12 MFKVQAQHDYT--ATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERVQ   83 (83)
T ss_dssp             CEEEEESSCBC--CSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEEC
T ss_pred             CEEEEEceeEC--CCCCCEecCcCCCEEEEEEccCCCcccCCEeEEEecCCccccccCCCCEEEEchhHeEEcC
Confidence            34689999998  5568999999999999998753     68999976          3679999999999874

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=3.5e-13  Score=99.46  Aligned_cols=56  Identities=29%  Similarity=0.359  Sum_probs=46.7

Q ss_pred             ceEEeecCCC----CCCCCCCeeccCCCEEEEEEeC-CCCEEEEEe--CCeeeeecCCceEEc
Q psy10852        482 FARVKQVRVP----NAYDKTALKLEIGDIIKVTKTN-INGQWEGEL--NGKTGHFPFTHVEFI  537 (563)
Q Consensus       482 ~~~~~~~y~~----~~~~~~eL~~~~gd~i~v~~~~-~~~w~~g~~--~g~~G~~P~~~v~~~  537 (563)
                      .++++++|..    .+.+++||+|++||+|.|++.. ++|||+|++  +|++||||++||++.
T Consensus         6 k~~a~~~y~~~~~~~~~~~~eLsf~~GD~i~Vl~~~~~~gWw~G~~~~~g~~G~fP~nyVePy   68 (69)
T d1gcqc_           6 KMEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY   68 (69)
T ss_dssp             EEEECSCBSSSSCCGGGCSCBCCBCTTCEEEEEECCTTCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             cEEEeeeEeccCCCCCCCCCEeeEcCCCEEEEEEEecCCCEEEEEECCCCCEEEEeHHHEEEc
Confidence            4677887763    2456889999999999999764 579999997  589999999999974

>d1uura3 d.93.1.1 (A:577-707) STAT homologue {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT homologue
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.37  E-value=2.1e-13  Score=115.39  Aligned_cols=74  Identities=20%  Similarity=0.386  Sum_probs=60.6

Q ss_pred             CCCccccCCCHHHHHHHHcCCCCCCeEEEEecCCCCcceEEEEEE---CCeEEEEEEEEecCCCcceEEEeCCceecChH
Q psy10852         10 RNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKE---NNKVSHYIINKITNTEQQTCYKIGDKTFSDLP   86 (563)
Q Consensus        10 ~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~~~~~~lsv~~---~~~v~h~~I~~~~~~~~~~~~~~~~~~F~sl~   86 (563)
                      ...||||.|+|++||++|+... +|+||||.|++.+|.|+||++.   +++|+||+|.....          +..|.++.
T Consensus         8 ~~~~~~G~isr~~ae~~L~~~~-~GtFLvR~S~s~~g~~~ls~~~~~~~~~v~h~~i~~~~~----------~~~~~sl~   76 (131)
T d1uura3           8 QEGIIYGYMGRQEVNDALQNQD-PGTFIIRFSERNPGQFGIAYIGVEMPARIKHYLVQPNDT----------AAAKKTFP   76 (131)
T ss_dssp             HHTSSCBSCCHHHHHHTTSSCC-TTCEEEEECSSSTTCEEEEEECSSSSCCEEEEECCGGGS----------BTTTBCHH
T ss_pred             hCCcEEccCCHHHHHHHHhcCC-CCeEEEEecCCCCCcEEEEEEEecCCCcEEEEEEeecCC----------CcccccHH
Confidence            3579999999999999998754 5999999999889999999997   47899999976432          23577888


Q ss_pred             hhHHhhhc
Q psy10852         87 SLLAFYKV   94 (563)
Q Consensus        87 ~Li~~y~~   94 (563)
                      ++|..|..
T Consensus        77 d~l~~~~~   84 (131)
T d1uura3          77 DFLSEHSQ   84 (131)
T ss_dssp             HHHTTCTT
T ss_pred             HHHHhHHH
Confidence            87766643

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=4e-13  Score=98.74  Aligned_cols=58  Identities=31%  Similarity=0.676  Sum_probs=50.5

Q ss_pred             eeEEEeecccCCCCCCCCCCCCCEEEEEEecCCCcEEEEec-CCcEEEEcCCCeEeccCC
Q psy10852        386 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       386 ~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~W~~~~~~-~g~~G~~P~~~v~~~~~~  444 (563)
                      ..++|||+|.++.++||+|++||+|.|+++ +++||.++.. +|+.||||++||+++...
T Consensus         5 ~~vvAlydy~~~~~~eLs~~~Gd~i~v~~~-~~~ww~~~~~~~g~~G~vP~~yv~~~~~~   63 (65)
T d1qcfa1           5 IIVVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVDSL   63 (65)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEC-CTTEEEEEETTTCCEEEEEGGGEEETTCG
T ss_pred             EEEEECCcCCCCCcCccCCCCCCEEEEEEE-CCCCEEEEEccCCCEEEEchHHeEECccC
Confidence            468899999999999999999999999986 4578888654 789999999999988653

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=5.3e-13  Score=100.78  Aligned_cols=58  Identities=9%  Similarity=0.206  Sum_probs=53.0

Q ss_pred             eeeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEeeC-----CCeeeEEecCceeeccc
Q psy10852        111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-----SGEVGSIPVPYVQKYSE  168 (563)
Q Consensus       111 ~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~~-----~g~~G~fP~~yv~~~~~  168 (563)
                      ..++|+|||.++.++||+|++||+|.|+++.+++||.+++.     +|++||||++||+++..
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~v~~~~~~~~~g~~G~vP~~yve~~~~   70 (74)
T d1wfwa_           8 STMTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSILAPFSG   70 (74)
T ss_dssp             CEEECCSCBCCCSSSCCCBCTTCEEEEEEECTTSEEEEEECSCSSSSSEEEEEEGGGCCBCCS
T ss_pred             CEEEEeEEECCCCCCCccCccCCEEEEEEEcCCCCEEEEeCccCCcCCeeeEEchHHeEECCC
Confidence            46899999999999999999999999999999999999863     47899999999998864

>d1xa6a2 d.93.1.1 (A:21-161) Beta-chimaerin, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Beta-chimaerin, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.2e-12  Score=111.29  Aligned_cols=76  Identities=24%  Similarity=0.457  Sum_probs=65.4

Q ss_pred             CCCCCCccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeCCcccCChh
Q psy10852        282 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLP  361 (563)
Q Consensus       282 ~~~~~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~~~~f~sl~  361 (563)
                      +.....||||.|+|++|+.+|..  .+|+||||.|.+.+|.|+||++.+++++|++|.+.+ .     +++.+..|+|+.
T Consensus        31 ~~~~~~wyhG~isR~eAe~lL~~--~dGsFLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~g-~-----~~~~~~~F~sl~  102 (141)
T d1xa6a2          31 PKYYGREFHGIISREQADELLGG--VEGAYILRESQRQPGCYTLALRFGNQTLNYRLFHDG-K-----HFVGEKRFESIH  102 (141)
T ss_dssp             SCSSCSSEEEECCHHHHHHHHCS--CTTBEEEEECSSSTTCEEEEEEETTEEEECCCEESS-S-----EECSSSCCCCSS
T ss_pred             cccccceeeccCCHHHHHHHHcC--CCCeEEEEecCCCCCCEEEEEEECCEEEEEEEEECC-C-----EEECCCeECCHH
Confidence            34455899999999999999964  469999999999999999999999999999998632 2     677778899999


Q ss_pred             hHHh
Q psy10852        362 SLLA  365 (563)
Q Consensus       362 ~lv~  365 (563)
                      +||.
T Consensus       103 eLV~  106 (141)
T d1xa6a2         103 DLVT  106 (141)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9885

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.36  E-value=2.8e-13  Score=96.36  Aligned_cols=52  Identities=25%  Similarity=0.564  Sum_probs=45.4

Q ss_pred             EEEeecccCCCCCCCCCCCCCEEEEEEecCCC-cEEEEe-cCCcEEEEcCCCeE
Q psy10852        388 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH-WWTAQN-ISGEVGSIPVPYVQ  439 (563)
Q Consensus       388 ~~a~~~y~~~~~~el~~~~g~~v~v~~~~~~~-W~~~~~-~~g~~G~~P~~~v~  439 (563)
                      ++|||+|.++.++||+|++||+|.|+++.+.+ ||.+.. .+|+.||||++||+
T Consensus         2 aralydf~a~~~~ELs~~~Gd~i~v~~~~~~~~w~~~~~~~~g~~G~~P~nyve   55 (56)
T d1zuua1           2 NKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR   55 (56)
T ss_dssp             CEECSCBCCCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEE
T ss_pred             CEEeeeeCCCCCCEeeECCCCEEEEEEEecCCCcEEEeCCCCceEEEEehhhEE
Confidence            68999999999999999999999999987655 555543 47999999999997

>d1bg1a3 d.93.1.1 (A:576-716) STAT3b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT3b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=2e-14  Score=121.52  Aligned_cols=82  Identities=18%  Similarity=0.312  Sum_probs=69.3

Q ss_pred             CCCccccCCCHHHHHHHHcCCCCCCeEEEEecC-CCCcceEEEEEECCeEEEEEEEEecCCCcceEEEeCCceecChHhh
Q psy10852         10 RNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSN-TILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSL   88 (563)
Q Consensus        10 ~~~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~-~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~sl~~L   88 (563)
                      ...||||.|+|++||++|+++. +|+||||.|+ +..|.|+||++..+...|++|.... .     |...+-.|.||.||
T Consensus         6 ~~gw~~G~isr~~a~~~L~~~~-~GtFLvR~S~~s~~G~~tis~~~~~~~~~~~i~~~~-p-----~t~~dl~~~sL~dl   78 (141)
T d1bg1a3           6 NEGYIMGFISKERERAILSTKP-PGTFLLRFSESSKEGGVTFTWVEKDISGSTQIQSVE-P-----YTKQQLNNMSFAEI   78 (141)
T ss_dssp             HSSCCCBCCCTTGGGTTTTTSC-TTCBCEEECSSCSSCCEEECCCCSSSCSSCCCCCCC-C-----BCGGGGTSSCHHHH
T ss_pred             cCCeEEEeCCHHHHHHHhhCCC-CCeEEEEecCCccCCCEEEEEEecCcCCceEEeecC-C-----eecCccccCCHHHH
Confidence            4689999999999999998765 5999999997 4589999999999989999887643 2     66667789999999


Q ss_pred             HHhhhcccCC
Q psy10852         89 LAFYKVHYLD   98 (563)
Q Consensus        89 i~~y~~~~~~   98 (563)
                      |.||+.....
T Consensus        79 I~~y~~~~~~   88 (141)
T d1bg1a3          79 IMGYKIMDAT   88 (141)
T ss_dssp             TTSCCCBCTT
T ss_pred             HHhhhhhccc
Confidence            9999866543

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.34  E-value=3.7e-13  Score=103.91  Aligned_cols=58  Identities=24%  Similarity=0.467  Sum_probs=50.5

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEecC-----CCcEEEEec---------CCcEEEEcCCCeEecc
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE-----EHWWTAQNI---------SGEVGSIPVPYVQKYS  442 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~~-----~~W~~~~~~---------~g~~G~~P~~~v~~~~  442 (563)
                      ..+++|||+|.++.++||+|++||+|.|+.+.+     +|||.|...         +|+.||||+|||+.+.
T Consensus        12 ~~~~~Alydy~a~~~~ELs~~~Gd~i~Vl~~~~~~~~~dgWw~G~~~~~~~~~~~~~g~~G~fP~nyVe~ie   83 (83)
T d1bb9a_          12 MFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERVQ   83 (83)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEEC
T ss_pred             CEEEEEceeECCCCCCEecCcCCCEEEEEEccCCCcccCCEeEEEecCCccccccCCCCEEEEchhHeEEcC
Confidence            568999999999999999999999999998753     689999632         4789999999999763

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.6e-12  Score=94.53  Aligned_cols=54  Identities=33%  Similarity=0.664  Sum_probs=48.0

Q ss_pred             eeeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEee-CCCeeeEEecCceee
Q psy10852        111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQK  165 (563)
Q Consensus       111 ~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~-~~g~~G~fP~~yv~~  165 (563)
                      ..++|+|||.++.++||+|++||+|.|+++.+ +||.+++ .+|+.||||++||++
T Consensus         7 ~~~~al~dy~a~~~~eLs~~~Gd~i~v~~~~~-~ww~~~~~~~g~~G~~P~~yV~~   61 (62)
T d2iima1           7 NLVIALHSYEPSHDGDLGFEKGEQLRILEQSG-EWWKAQSLTTGQEGFIPFNFVAK   61 (62)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCS-SEEEEEETTTCCEEEEEGGGEEE
T ss_pred             cEEEECCCCCcCCcCCcCCCCCCEEEEeEEcC-CCEEEEeccCCeEeEEcHHHEEe
Confidence            56999999999999999999999999998875 5777655 578999999999986

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=9.4e-13  Score=106.23  Aligned_cols=60  Identities=25%  Similarity=0.257  Sum_probs=50.4

Q ss_pred             cceEEeecCCCCCCCCCCeeccCCCEEEEEEeC---CCCEEEEEeCC--------eeeeecCCceEEcCCCCC
Q psy10852        481 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTN---INGQWEGELNG--------KTGHFPFTHVEFIPTNET  542 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~eL~~~~gd~i~v~~~~---~~~w~~g~~~g--------~~G~~P~~~v~~~~~~~~  542 (563)
                      .+++|+++|.  +.+++||+|++||+|.|+++.   +.+||.|++.|        ++||||++||+.+.....
T Consensus        22 ~~~~Alydy~--~~~~~eL~f~~Gd~i~Vl~k~~~~~~~WW~g~~~g~~~~~~~g~~G~fP~nyV~~~~~~~~   92 (106)
T d1i1ja_          22 SMAVALQDYM--APDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQTLKP   92 (106)
T ss_dssp             EEEEESSCBC--CSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEEEECSC
T ss_pred             eEEEEccccC--CCCCCCccCCCCCEEEEEEecCCCCcceEEEEecCccccccCCcccccccccEEEccccCc
Confidence            3689999998  666999999999999999873   48999998765        589999999998864443

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.3e-12  Score=94.57  Aligned_cols=57  Identities=32%  Similarity=0.692  Sum_probs=50.0

Q ss_pred             eeeeecccCCCCCCCCCcCCCCCEEEEEEecCCCeeEEee-CCCeeeEEecCceeeccc
Q psy10852        111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKYSE  168 (563)
Q Consensus       111 ~~~~a~~d~~~~~~~eLs~~~Gd~i~vl~~~~~~ww~g~~-~~g~~G~fP~~yv~~~~~  168 (563)
                      ..++|+|||.++.++||+|++||+|.|+++ +++||.+++ .+|+.|+||+|||++++.
T Consensus         5 ~~vvAlydy~~~~~~eLs~~~Gd~i~v~~~-~~~ww~~~~~~~g~~G~vP~~yv~~~~~   62 (65)
T d1qcfa1           5 IIVVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVDS   62 (65)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEC-CTTEEEEEETTTCCEEEEEGGGEEETTC
T ss_pred             EEEEECCcCCCCCcCccCCCCCCEEEEEEE-CCCCEEEEEccCCCEEEEchHHeEECcc
Confidence            457899999999999999999999999986 457888876 478999999999998863

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=3.3e-12  Score=102.95  Aligned_cols=60  Identities=20%  Similarity=0.293  Sum_probs=51.7

Q ss_pred             eeeEEEeecccCCCCCCCCCCCCCEEEEEEec---CCCcEEEEec-------CCcEEEEcCCCeEeccCC
Q psy10852        385 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD---EEHWWTAQNI-------SGEVGSIPVPYVQKYSEG  444 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~el~~~~g~~v~v~~~~---~~~W~~~~~~-------~g~~G~~P~~~v~~~~~~  444 (563)
                      ..+++|||+|.++.++||+|++||+|.|+++.   +++||.|+..       +|+.||||++||+.+...
T Consensus        21 ~~~~~Alydy~~~~~~eL~f~~Gd~i~Vl~k~~~~~~~WW~g~~~g~~~~~~~g~~G~fP~nyV~~~~~~   90 (106)
T d1i1ja_          21 ISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQTL   90 (106)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEEEEC
T ss_pred             eeEEEEccccCCCCCCCccCCCCCEEEEEEecCCCCcceEEEEecCccccccCCcccccccccEEEcccc
Confidence            45799999999999999999999999999983   4789999632       357899999999987654

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.25  E-value=2e-12  Score=101.03  Aligned_cols=54  Identities=28%  Similarity=0.543  Sum_probs=49.2

Q ss_pred             eeeEEEeecccCCCCCC-------CCCCCCCEEEEEEecCCCcEEEEec--CCcEEEEcCCCe
Q psy10852        385 IEKVIAKYDFDGNDPDD-------LPFKKNDILIVVSKDEEHWWTAQNI--SGEVGSIPVPYV  438 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~e-------l~~~~g~~v~v~~~~~~~W~~~~~~--~g~~G~~P~~~v  438 (563)
                      ...++|+|+|++..+++       |+|++||+|.|+.+.+++||.|++.  +|+.||||++++
T Consensus        21 ~~~vrAlydY~~~~dd~~P~~~~~LsF~~GDii~v~~~~d~~WW~gr~~~~~g~~G~~PS~~~   83 (96)
T d1t0ha_          21 AFAVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVK   83 (96)
T ss_dssp             CEEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHH
T ss_pred             cEEEEEeeccCCCCCCCCccccccccCCCCCEEEEeeeeCCCceEEEEcCCCCCEEEecCcHH
Confidence            56899999999999998       9999999999999999999999864  689999999874

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.24  E-value=4.7e-13  Score=106.96  Aligned_cols=56  Identities=27%  Similarity=0.581  Sum_probs=48.9

Q ss_pred             eEEEeecccCCCC-----CCCCCCCCCEEEEEEecCCCcEEEEe-----cCCcEEEEcCCCeEecc
Q psy10852        387 KVIAKYDFDGNDP-----DDLPFKKNDILIVVSKDEEHWWTAQN-----ISGEVGSIPVPYVQKYS  442 (563)
Q Consensus       387 ~~~a~~~y~~~~~-----~el~~~~g~~v~v~~~~~~~W~~~~~-----~~g~~G~~P~~~v~~~~  442 (563)
                      +++|||+|.++.+     .||+|++||+|.|+.+.+++||+|+.     .+|+.||||+|||+...
T Consensus         3 ~vrAlydy~~~~d~~~~~~eLsf~kGdil~V~~~~d~~WW~~~~~~~~~~~g~~G~~Psnyv~e~~   68 (96)
T d1kjwa1           3 YIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVERR   68 (96)
T ss_dssp             EEEESSCBCHHHHHCCCSSBCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHHHH
T ss_pred             EEEEcccCcCCcCCCCCCccceEcCCCEEEEeeeccCceEEEEEccCCCCCCCEeEEeccceeeeh
Confidence            6789999999763     48999999999999999999999974     36899999999997543

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.19  E-value=4.1e-12  Score=99.30  Aligned_cols=52  Identities=19%  Similarity=0.267  Sum_probs=45.9

Q ss_pred             cceEEeecCCCCCCCCCC-------eeccCCCEEEEEEeCCCCEEEEEe---CCeeeeecCCce
Q psy10852        481 AFARVKQVRVPNAYDKTA-------LKLEIGDIIKVTKTNINGQWEGEL---NGKTGHFPFTHV  534 (563)
Q Consensus       481 ~~~~~~~~y~~~~~~~~e-------L~~~~gd~i~v~~~~~~~w~~g~~---~g~~G~~P~~~v  534 (563)
                      .+++|+|+|++..  .++       |+|++||+|.|+.+.+++||.|++   +|+.||||++++
T Consensus        22 ~~vrAlydY~~~~--dd~~P~~~~~LsF~~GDii~v~~~~d~~WW~gr~~~~~g~~G~~PS~~~   83 (96)
T d1t0ha_          22 FAVRTNVRYSAAQ--EDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVK   83 (96)
T ss_dssp             EEEEESSCBCCCG--GGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHH
T ss_pred             EEEEEeeccCCCC--CCCCccccccccCCCCCEEEEeeeeCCCceEEEEcCCCCCEEEecCcHH
Confidence            4789999999654  556       999999999999999999999998   589999999763

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.18  E-value=1.4e-12  Score=104.06  Aligned_cols=56  Identities=27%  Similarity=0.581  Sum_probs=48.9

Q ss_pred             eeeecccCCCCCC-----CCCcCCCCCEEEEEEecCCCeeEEee-----CCCeeeEEecCceeecc
Q psy10852        112 KVIAKYDFDGNDP-----DDLPFKKNDILIVVSKDEEHWWTAQN-----ISGEVGSIPVPYVQKYS  167 (563)
Q Consensus       112 ~~~a~~d~~~~~~-----~eLs~~~Gd~i~vl~~~~~~ww~g~~-----~~g~~G~fP~~yv~~~~  167 (563)
                      .++|+|||.++++     .||+|++||+|.|+++.+++||.|+.     .+|++||||+|||++..
T Consensus         3 ~vrAlydy~~~~d~~~~~~eLsf~kGdil~V~~~~d~~WW~~~~~~~~~~~g~~G~~Psnyv~e~~   68 (96)
T d1kjwa1           3 YIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVERR   68 (96)
T ss_dssp             EEEESSCBCHHHHHCCCSSBCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHHHH
T ss_pred             EEEEcccCcCCcCCCCCCccceEcCCCEEEEeeeccCceEEEEEccCCCCCCCEeEEeccceeeeh
Confidence            3679999999863     58999999999999999999999984     47899999999997643

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.99  E-value=1.1e-10  Score=100.09  Aligned_cols=55  Identities=25%  Similarity=0.505  Sum_probs=49.4

Q ss_pred             eeeEEEeecccCCCCCC-------CCCCCCCEEEEEEecCCCcEEEEec--CCcEEEEcCCCeE
Q psy10852        385 IEKVIAKYDFDGNDPDD-------LPFKKNDILIVVSKDEEHWWTAQNI--SGEVGSIPVPYVQ  439 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~e-------l~~~~g~~v~v~~~~~~~W~~~~~~--~g~~G~~P~~~v~  439 (563)
                      ...++|+|+|.+..+++       |+|++||+|.|+++.+++||.|++.  +|+.||||++|+.
T Consensus        23 ~f~vra~~dy~~~~d~~~p~~~~~LsF~kGDii~V~~~~d~~WW~gr~~~~~g~~G~iPS~~~~   86 (145)
T d1vyva1          23 AFAVKTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLRL   86 (145)
T ss_dssp             CEEEEESSCBCTTSCCSCSSTTCBCCBCTTCEEEEEEEEETTEEEEEESSTTCCCEEEECHHHH
T ss_pred             cEEEEEeeeeCCccCCcCCcccccccCcCCCEEEEeeccCCCcEEEEEcCCCCceeEeCCchhh
Confidence            44799999999999887       9999999999999999999999863  6999999997753

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.94  E-value=1.8e-10  Score=98.69  Aligned_cols=52  Identities=13%  Similarity=0.236  Sum_probs=46.0

Q ss_pred             ceEEeecCCCCCCCCCC-------eeccCCCEEEEEEeCCCCEEEEEe---CCeeeeecCCceE
Q psy10852        482 FARVKQVRVPNAYDKTA-------LKLEIGDIIKVTKTNINGQWEGEL---NGKTGHFPFTHVE  535 (563)
Q Consensus       482 ~~~~~~~y~~~~~~~~e-------L~~~~gd~i~v~~~~~~~w~~g~~---~g~~G~~P~~~v~  535 (563)
                      ++|++|+|.+..  .++       |+|++||+|.|+.+.+++||.|++   +|+.||||++|+.
T Consensus        25 ~vra~~dy~~~~--d~~~p~~~~~LsF~kGDii~V~~~~d~~WW~gr~~~~~g~~G~iPS~~~~   86 (145)
T d1vyva1          25 AVKTNVSYCGAL--DEDVPVPSSAVSFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLRL   86 (145)
T ss_dssp             EEEESSCBCTTS--CCSCSSTTCBCCBCTTCEEEEEEEEETTEEEEEESSTTCCCEEEECHHHH
T ss_pred             EEEEeeeeCCcc--CCcCCcccccccCcCCCEEEEeeccCCCcEEEEEcCCCCceeEeCCchhh
Confidence            699999999555  555       999999999999999999999998   6899999987653

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.77  E-value=1.3e-09  Score=91.19  Aligned_cols=54  Identities=22%  Similarity=0.489  Sum_probs=48.1

Q ss_pred             eeeEEEeecccCCCCCC-------CCCCCCCEEEEEEecCCCcEEEEec--CCcEEEEcCCCe
Q psy10852        385 IEKVIAKYDFDGNDPDD-------LPFKKNDILIVVSKDEEHWWTAQNI--SGEVGSIPVPYV  438 (563)
Q Consensus       385 ~~~~~a~~~y~~~~~~e-------l~~~~g~~v~v~~~~~~~W~~~~~~--~g~~G~~P~~~v  438 (563)
                      ...++|+|+|++..+++       |+|++||+|.|+.+.|++||+|++.  +|..|+||+.|+
T Consensus        23 ~~~vra~~~Y~~~~d~~~P~~~~~LsF~~gdil~v~~~~d~~WW~~r~~~~~~~~G~iPs~~~   85 (136)
T d1vyua1          23 AFAVRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQR   85 (136)
T ss_dssp             CEEEEESSCEEGGGCTTCSSTTCBCEECTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHH
T ss_pred             eEEEEEeeccCCCCCCCCcccCcccCCCCCCEEEEEeccCCCcEEEEeccCCCceeccCchHH
Confidence            34689999999988887       9999999999999999999999864  578999999874

>d1bg1a3 d.93.1.1 (A:576-716) STAT3b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT3b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.65  E-value=1.5e-09  Score=91.21  Aligned_cols=81  Identities=19%  Similarity=0.315  Sum_probs=68.0

Q ss_pred             CCccccccCHHHHHHHHhcCCCCCcEEEEecC-CCCcceEEEEEeCCeeEEEEEeeecCCCcceeEEeCCcccCChhhHH
Q psy10852        286 NSWYFGMMTRQEAQAILLSEKDNGAFLVRDSN-TILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLL  364 (563)
Q Consensus       286 ~~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~-~~~g~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~i~~~~f~sl~~lv  364 (563)
                      ..||+|.|+|++|+++|... .+|+||||.|+ +.+|.++++++..+.+.|++|...+ .     |...+-.|.|++++|
T Consensus         7 ~gw~~G~isr~~a~~~L~~~-~~GtFLvR~S~~s~~G~~tis~~~~~~~~~~~i~~~~-p-----~t~~dl~~~sL~dlI   79 (141)
T d1bg1a3           7 EGYIMGFISKERERAILSTK-PPGTFLLRFSESSKEGGVTFTWVEKDISGSTQIQSVE-P-----YTKQQLNNMSFAEII   79 (141)
T ss_dssp             SSCCCBCCCTTGGGTTTTTS-CTTCBCEEECSSCSSCCEEECCCCSSSCSSCCCCCCC-C-----BCGGGGTSSCHHHHT
T ss_pred             CCeEEEeCCHHHHHHHhhCC-CCCeEEEEecCCccCCCEEEEEEecCcCCceEEeecC-C-----eecCccccCCHHHHH
Confidence            37999999999999999765 57999999998 4689999999999988888886543 2     666677899999999


Q ss_pred             hhhhcccCC
Q psy10852        365 AFYKVHYLD  373 (563)
Q Consensus       365 ~~y~~~~~~  373 (563)
                      .||+.....
T Consensus        80 ~~y~~~~~~   88 (141)
T d1bg1a3          80 MGYKIMDAT   88 (141)
T ss_dssp             TSCCCBCTT
T ss_pred             Hhhhhhccc
Confidence            999865543

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.65  E-value=5.1e-09  Score=87.58  Aligned_cols=54  Identities=22%  Similarity=0.449  Sum_probs=47.7

Q ss_pred             eeeeecccCCCCCCCC-------CcCCCCCEEEEEEecCCCeeEEee--CCCeeeEEecCcee
Q psy10852        111 EKVIAKYDFDGNDPDD-------LPFKKNDILIVVSKDEEHWWTAQN--ISGEVGSIPVPYVQ  164 (563)
Q Consensus       111 ~~~~a~~d~~~~~~~e-------Ls~~~Gd~i~vl~~~~~~ww~g~~--~~g~~G~fP~~yv~  164 (563)
                      -.++|+|+|.+..+++       |+|++||+|.|+++.|++||.|+.  .+|..|+||++|+.
T Consensus        24 ~~vra~~~Y~~~~d~~~P~~~~~LsF~~gdil~v~~~~d~~WW~~r~~~~~~~~G~iPs~~~l   86 (136)
T d1vyua1          24 FAVRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQRL   86 (136)
T ss_dssp             EEEEESSCEEGGGCTTCSSTTCBCEECTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHHH
T ss_pred             EEEEEeeccCCCCCCCCcccCcccCCCCCCEEEEEeccCCCcEEEEeccCCCceeccCchHHH
Confidence            3488999999988887       899999999999999999999997  35788999998854

>d1uura3 d.93.1.1 (A:577-707) STAT homologue {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT homologue
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.65  E-value=1.9e-08  Score=84.32  Aligned_cols=70  Identities=23%  Similarity=0.421  Sum_probs=56.0

Q ss_pred             CccccccCHHHHHHHHhcCCCCCcEEEEecCCCCcceEEEEEeC---CeeEEEEEeeecCCCcceeEEeCCcccCChhhH
Q psy10852        287 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKEN---NKVSHYIINKITNTEQQTCYKIGDKTFSDLPSL  363 (563)
Q Consensus       287 ~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~~g~~~ls~~~~---~~v~h~~I~~~~~~~~~~~~~i~~~~f~sl~~l  363 (563)
                      .||+|.|+|++|+++|... .+|+||||.|++.+|.|+|+++..   ++++|+.|...+.+          -.|.+++++
T Consensus        10 ~~~~G~isr~~ae~~L~~~-~~GtFLvR~S~s~~g~~~ls~~~~~~~~~v~h~~i~~~~~~----------~~~~sl~d~   78 (131)
T d1uura3          10 GIIYGYMGRQEVNDALQNQ-DPGTFIIRFSERNPGQFGIAYIGVEMPARIKHYLVQPNDTA----------AAKKTFPDF   78 (131)
T ss_dssp             TSSCBSCCHHHHHHTTSSC-CTTCEEEEECSSSTTCEEEEEECSSSSCCEEEEECCGGGSB----------TTTBCHHHH
T ss_pred             CcEEccCCHHHHHHHHhcC-CCCeEEEEecCCCCCcEEEEEEEecCCCcEEEEEEeecCCC----------cccccHHHH
Confidence            7999999999999999764 569999999999999999999974   57999998764332          245566665


Q ss_pred             Hhhh
Q psy10852        364 LAFY  367 (563)
Q Consensus       364 v~~y  367 (563)
                      +..|
T Consensus        79 l~~~   82 (131)
T d1uura3          79 LSEH   82 (131)
T ss_dssp             HTTC
T ss_pred             HHhH
Confidence            5443

>d1bf5a3 d.93.1.1 (A:569-710) STAT-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=8e-06  Score=67.03  Aligned_cols=73  Identities=21%  Similarity=0.395  Sum_probs=52.3

Q ss_pred             CccccCCCHHHHHHHHcCCCCCCeEEEEecCCC-CcceEEEEEEC----CeEEEEEEEEecCCCcceEEEeCCceecChH
Q psy10852         12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTI-LGNYVLCVKEN----NKVSHYIINKITNTEQQTCYKIGDKTFSDLP   86 (563)
Q Consensus        12 ~w~~g~i~r~~ae~~L~~~~~~G~FLvR~s~~~-~~~~~lsv~~~----~~v~h~~I~~~~~~~~~~~~~~~~~~F~sl~   86 (563)
                      .|..|.|+|++|+++|+++.. |+||+|.|++. +|..+++....    ++..++.|..         |...+-.-.||+
T Consensus         8 G~I~GFIsK~~a~~~L~~~~~-GTFLLRFSdS~~~GgitiawV~~~~~~~~~~v~~lqP---------~t~kdl~~~sLa   77 (142)
T d1bf5a3           8 GCIMGFISKERERALLKDQQP-GTFLLRFSESSREGAITFTWVERSQNGGEPDFHAVEP---------YTKKELSAVTFP   77 (142)
T ss_dssp             TCCCCCCCHHHHHHHTTTCCS-CCCCEEECSSCSSCCEEEEECCCCSSSSCCCCEECCC---------BCHHHHHSSCHH
T ss_pred             CEEEEEecHHHHHHHhhCCCC-ceEEEEeccCccCCceEEEEEEecCCCCceeEEeeCC---------CchhhhccCCHH
Confidence            577899999999999998766 99999999876 59999988642    2333333332         111122346899


Q ss_pred             hhHHhhhc
Q psy10852         87 SLLAFYKV   94 (563)
Q Consensus        87 ~Li~~y~~   94 (563)
                      +.|..|..
T Consensus        78 d~Ird~~~   85 (142)
T d1bf5a3          78 DIIRNYKV   85 (142)
T ss_dssp             HHHHTCCC
T ss_pred             HHHHHHHh
Confidence            99998863

>d1ri9a_ b.34.2.1 (A:) Fyn-binding protein (T-cell adapter protein adap) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn-binding protein (T-cell adapter protein adap)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.28  E-value=0.003  Score=45.29  Aligned_cols=51  Identities=18%  Similarity=0.267  Sum_probs=41.8

Q ss_pred             eeecccCCCC--CCCCCcCCCCCEEEEEEecCCCeeEEeeCCCeeeEEecCce
Q psy10852        113 VIAKYDFDGN--DPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV  163 (563)
Q Consensus       113 ~~a~~d~~~~--~~~eLs~~~Gd~i~vl~~~~~~ww~g~~~~g~~G~fP~~yv  163 (563)
                      +.+..+....  ...+|+++.|+.|.|+...+++-|.+||..|+-|+++.++|
T Consensus        23 ~~v~~~~~~~k~g~~dL~vk~GE~ldVIr~t~~~k~LcRN~~GkYGYV~~~~l   75 (77)
T d1ri9a_          23 TKVTTSITSKKWGTRDLQVKPGESLEVIQTTDDTKVLCRNEEGKYGYVLRSYL   75 (77)
T ss_dssp             CBCCTTSCSSCCCTTBCCCCTTCBCEEEEESSSSEEEEEETTTEEEEEEGGGS
T ss_pred             EEEeeccccccCCcccCCcCCCCEEEEEEeCCCCeEEEEcCCCcEEEEEeeee
Confidence            4444444333  35799999999999999999999999999999999998765

>d1ri9a_ b.34.2.1 (A:) Fyn-binding protein (T-cell adapter protein adap) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn-binding protein (T-cell adapter protein adap)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.81  E-value=0.0036  Score=44.87  Aligned_cols=40  Identities=23%  Similarity=0.348  Sum_probs=37.0

Q ss_pred             CCCCCCCCCCEEEEEEecCCCcEEEEecCCcEEEEcCCCe
Q psy10852        399 PDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV  438 (563)
Q Consensus       399 ~~el~~~~g~~v~v~~~~~~~W~~~~~~~g~~G~~P~~~v  438 (563)
                      ..+|.+++|+.|.|+...+++=|.|++..|+-|+|+.++|
T Consensus        36 ~~dL~vk~GE~ldVIr~t~~~k~LcRN~~GkYGYV~~~~l   75 (77)
T d1ri9a_          36 TRDLQVKPGESLEVIQTTDDTKVLCRNEEGKYGYVLRSYL   75 (77)
T ss_dssp             TTBCCCCTTCBCEEEEESSSSEEEEEETTTEEEEEEGGGS
T ss_pred             cccCCcCCCCEEEEEEeCCCCeEEEEcCCCcEEEEEeeee
Confidence            4689999999999999999999999999999999998775

>d1bf5a3 d.93.1.1 (A:569-710) STAT-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.34  E-value=0.035  Score=44.86  Aligned_cols=43  Identities=23%  Similarity=0.434  Sum_probs=36.1

Q ss_pred             CccccccCHHHHHHHHhcCCCCCcEEEEecCCC-CcceEEEEEeC
Q psy10852        287 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTI-LGNYVLCVKEN  330 (563)
Q Consensus       287 ~w~~g~~sr~~A~~~l~~~~~~G~FlvR~S~~~-~g~~~ls~~~~  330 (563)
                      .|.+|-+++++|+++|..... |+||+|-|++. +|..+++....
T Consensus         8 G~I~GFIsK~~a~~~L~~~~~-GTFLLRFSdS~~~GgitiawV~~   51 (142)
T d1bf5a3           8 GCIMGFISKERERALLKDQQP-GTFLLRFSESSREGAITFTWVER   51 (142)
T ss_dssp             TCCCCCCCHHHHHHHTTTCCS-CCCCEEECSSCSSCCEEEEECCC
T ss_pred             CEEEEEecHHHHHHHhhCCCC-ceEEEEeccCccCCceEEEEEEe
Confidence            456788999999999988654 99999999986 69988888753

>d3buxb3 d.93.1.1 (B:264-351) Cbl {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Cbl
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.95  E-value=1.9  Score=29.91  Aligned_cols=43  Identities=26%  Similarity=0.372  Sum_probs=36.8

Q ss_pred             CccccCCCHHHHHHHHcC-CCCCCeEEEEecCCCCcceEEEEEE
Q psy10852         12 SWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKE   54 (563)
Q Consensus        12 ~w~~g~i~r~~ae~~L~~-~~~~G~FLvR~s~~~~~~~~lsv~~   54 (563)
                      +=|...|+=+|+...|+. ....|+|+.|-|=++.|..++-+..
T Consensus         3 PgY~AFlTYDevk~rL~~~~~kPGSYiFRlSCTrlGQWAIGyvt   46 (88)
T d3buxb3           3 PGYMAFLTYDEVKARLQKFIHKPGSYIFRLSCTRLGQWAIGYVT   46 (88)
T ss_dssp             TTBCTTCCHHHHHHHHGGGTTSTTEEEEEECSSSTTSEEEEEEC
T ss_pred             CceeEEEeHHHHHHHHHHHhcCCCceEEeeccccccceeeeeec
Confidence            557778999999999988 3445999999999999999998765