Diaphorina citri psyllid: psy11409


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320
MLANLVEILGGRSPYISAGLDDASLLDDFLLLLSRALVPNLGPNDILKLSFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLCVSSPTIKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHGEIDKRVEVKPYVLDDQMCDECQGVRCGGKFAPFFCANVCCLQYYCEHCWATIHSKPGREFHKPLVKEGAYDSLQTRTRVSQTSSEGRSG
ccccHHHccccccccccccccccccHHHHHHHHcccccccccccccccccccccccEEEcccccccHHHHHHHHHccccEEEEcccccccccccccccEEEEEEEcHHHHHHHHHHccccccccEEEEccccccccccccccccccccccccccccccccccEEEEcccccccHHHHHHHHHHHHcccEEEEEEECcccccccccCEEEEEccHHHHHHHHHHccEEcccccccEEEEEcccccccccccccccccccccccCECcccccHHHHccHHHHHHHHcccccccccccccccccccccccccccccccccccc
***NLVEILGGRSPYISAGLDDASLLDDFLLLLSRALVPNLGPNDILKLSFP****FPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLCVSSPTIKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHGEIDKRVEVKPYVLDDQMCDECQGVRCGGKFAPFFCANVCCLQYYCEHCWATIHSKPGREFHKP**************************
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MLANLVEILGGRSPYISAGLDDASLLDDFLLLLSRALVPNLGPNDILKLSFPSPPQFPLQGTPHYDHEEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLIDACIVDEDKCYLCVSSPTIKDKPVQIRPWKLTDADFVLDASMPLDPRKTVFVGGVPRPLKALELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFASQASYIAAISARFVQLQHGEIDKRVEVKPYVLDDQMCDECQGVRCGGKFAPFFCANVCCLQYYCEHCWATIHSKPGREFHKPLVKEGAYDSLQTRTRVSQTSSEGRSG

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Cytoplasmic polyadenylation element-binding protein 4 confidentQ17RY0
Cytoplasmic polyadenylation element-binding protein 4 confidentQ7SXN4
Probable RNA-binding protein orb2 confidentQ9VSR3

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0003723 [MF]RNA bindingconfidentGO:0097159, GO:0003674, GO:1901363, GO:0003676, GO:0005488
GO:0045202 [CC]synapseconfidentGO:0005575
GO:0008187 [MF]poly-pyrimidine tract bindingprobableGO:0097159, GO:0003727, GO:0003674, GO:0005488, GO:0003676, GO:1901363, GO:0003723
GO:0000166 [MF]nucleotide bindingprobableGO:0097159, GO:0036094, GO:0003674, GO:0005488, GO:1901363, GO:1901265
GO:0005844 [CC]polysomeprobableGO:0032991, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0044424, GO:0030529
GO:0003730 [MF]mRNA 3'-UTR bindingprobableGO:0097159, GO:0003674, GO:0005488, GO:0003676, GO:0003729, GO:1901363, GO:0003723
GO:0044292 [CC]dendrite terminusprobableGO:0044463, GO:0044464, GO:0030425, GO:0005575, GO:0097458, GO:0005623, GO:0043005, GO:0042995
GO:0044297 [CC]cell bodyprobableGO:0005575, GO:0044464, GO:0005623
GO:0043679 [CC]axon terminusprobableGO:0044306, GO:0044463, GO:0044464, GO:0005623, GO:0030424, GO:0005575, GO:0097458, GO:0043005, GO:0033267, GO:0042995
GO:0000900 [MF]translation repressor activity, nucleic acid bindingprobableGO:0090079, GO:0003676, GO:0097159, GO:0030371, GO:0003674, GO:0005488, GO:0045182, GO:1901363
GO:0005737 [CC]cytoplasmprobableGO:0044424, GO:0005575, GO:0044464, GO:0005623, GO:0005622
GO:0045900 [BP]negative regulation of translational elongationprobableGO:0009892, GO:0080090, GO:0009890, GO:0051246, GO:0031327, GO:0031326, GO:0031324, GO:0031323, GO:0050789, GO:0051248, GO:0010605, GO:0019222, GO:0010608, GO:2000112, GO:2000113, GO:0065007, GO:0048519, GO:0010468, GO:0006448, GO:0060255, GO:0009889, GO:0050794, GO:0008150, GO:0032269, GO:0032268, GO:0010556, GO:0017148, GO:0006417, GO:0010558, GO:0048523
GO:0007616 [BP]long-term memoryprobableGO:0032501, GO:0044707, GO:0044708, GO:0050896, GO:0050890, GO:0007613, GO:0007610, GO:0007611, GO:0008150, GO:0050877, GO:0044699, GO:0003008
GO:0048793 [BP]pronephros developmentprobableGO:0032502, GO:0032501, GO:0044707, GO:0048856, GO:0001822, GO:0044767, GO:0048513, GO:0008150, GO:0001655, GO:0048731, GO:0072001, GO:0007275, GO:0044699
GO:0005515 [MF]protein bindingprobableGO:0003674, GO:0005488
GO:0008356 [BP]asymmetric cell divisionprobableGO:0008150, GO:0009987, GO:0044763, GO:0044699, GO:0051301
GO:0008049 [BP]male courtship behaviorprobableGO:0060179, GO:0044703, GO:0032501, GO:0032504, GO:0048609, GO:0007618, GO:0019098, GO:0007617, GO:0050896, GO:0007619, GO:0007610, GO:0022414, GO:0008150, GO:0044706, GO:0033057, GO:0000003, GO:0051705, GO:0051704
GO:0033125 [BP]negative regulation of GTP catabolic processprobableGO:0009894, GO:0009895, GO:0009892, GO:0080090, GO:0031329, GO:0031324, GO:0031323, GO:0019220, GO:0045980, GO:0050789, GO:0019222, GO:0045936, GO:0030812, GO:0030811, GO:0031330, GO:0065007, GO:0045978, GO:0048519, GO:0033122, GO:0033121, GO:0045934, GO:0033124, GO:0019219, GO:0050794, GO:0051174, GO:0008150, GO:0051171, GO:0051172, GO:0009118, GO:1900543, GO:1900542, GO:0010563, GO:0006140, GO:0048523

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 2DNL, chain A
Confidence level:very confident
Coverage over the Query: 51-155
View the alignment between query and template
View the model in PyMOL
Template: 1L3K, chain A
Confidence level:very confident
Coverage over the Query: 52-133,160-243
View the alignment between query and template
View the model in PyMOL
Template: 2GHP, chain A
Confidence level:confident
Coverage over the Query: 13-86,97-132,158-242
View the alignment between query and template
View the model in PyMOL
Template: 2D8V, chain A
Confidence level:probable
Coverage over the Query: 245-296
View the alignment between query and template
View the model in PyMOL