Psyllid ID: psy11502

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
MEKIHRETLRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRRVFYNKLFLIMIIVIESMTLSVMLYLKIFKKR
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MEKIHRETLRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRRVFYNKLFLIMIIVIESMTLSVMLYLKIFKKR
Flexible Loop (DISEMBL)
mekihretlretnqalvrtgesiVRSEQAALEAEaigtgviselgvQREALVRArdrlvdtdlhvsrsrrmiqairrrvfyNKLFLIMIIVIESMTLSVMLYLKIFKKR
Low Complexity Region (SEG)
MEKIHRETLRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVsrsrrmiqairrrVFYNKLFLIMIIVIESMTLSVMLYLKIFKKR
Disordered region (IsUnstruct)
*****************************ALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRRVFYNKLFLIMIIVIESMTLSVMLYLKIF***
Disordered Region (DISOPRED)
****HRE***********************LEAEAIGTGVISELGVQ***************L*VSRSRRMIQAIRRRVFYNKLFLIMIIVIESMTLSVMLYLKIFKK*
Disordered Region (DISEMBL)
********LRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRRVFYNKLFLIMIIVIESMTLSVMLYLKIFKKR
Disordered Region (DISPRO)
***IHRETLRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRRVFYNKLFLIMIIVIESMTLSVMLYLKIFKKR
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEKIHRETLRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRRVFYNKLFLIMIIVIESMTLSVMLYLKIFKKR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	109	2.2.26 [Sep-21-2011]
O88384	232	Vesicle transport through	yes	N/A	0.935	0.439	0.401	1e-13
P58200	232	Vesicle transport through	yes	N/A	0.935	0.439	0.401	1e-13
Q2KIU0	232	Vesicle transport through	yes	N/A	0.944	0.443	0.368	5e-12
Q9UEU0	232	Vesicle transport through	yes	N/A	0.862	0.405	0.404	3e-09
O89116	217	Vesicle transport through	no	N/A	0.917	0.460	0.303	2e-06
Q9LVP9	221	Vesicle transport v-SNARE	no	N/A	0.825	0.407	0.311	1e-05
Q96AJ9	217	Vesicle transport through	no	N/A	0.807	0.405	0.306	2e-05
Q9JI51	224	Vesicle transport through	yes	N/A	0.770	0.375	0.329	3e-05
Q54CK6	217	Vesicle transport through	yes	N/A	0.724	0.364	0.303	0.0001
Q9SEL6	221	Vesicle transport v-SNARE	no	N/A	0.844	0.416	0.293	0.0003

>sp|O88384|VTI1B_MOUSE Vesicle transport through interaction with t-SNAREs homolog 1B OS=Mus musculus GN=Vti1b PE=1 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 68/102 (66%)

Query: 6   RETLRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHV 65
           R  L +  ++L R  +SI RS + A E + IGT +I ELG QR+ L R + RLV+T+ ++
Sbjct: 129 RALLLQGTESLNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENL 188

Query: 66  SRSRRMIQAIRRRVFYNKLFLIMIIVIESMTLSVMLYLKIFK 107
           S+SR++++++ R+V  NKL L +II++E   L  ++Y K F+
Sbjct: 189 SKSRKILRSMSRKVITNKLLLSVIILLELAILVGLVYYKFFR 230

V-SNARE that mediates vesicle transport pathways through interactions with t-SNAREs on the target membrane. These interactions are proposed to mediate aspects of the specificity of vesicle trafficking and to promote fusion of the lipid bilayers.
Mus musculus (taxid: 10090)

>sp|P58200|VTI1B_RAT Vesicle transport through interaction with t-SNAREs homolog 1B OS=Rattus norvegicus GN=Vti1b PE=1 SV=2

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 68/102 (66%)

Query: 6   RETLRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHV 65
           R  L +  ++L R  +SI RS + A E + IG+ +I ELG QR+ L R + RLV+T+ ++
Sbjct: 129 RALLLQGTESLNRATQSIERSHRIAAETDQIGSEIIEELGEQRDQLERTKSRLVNTNENL 188

Query: 66  SRSRRMIQAIRRRVFYNKLFLIMIIVIESMTLSVMLYLKIFK 107
           S+SR++++++ R+V  NKL L +IIV+E   L  ++Y K F+
Sbjct: 189 SKSRKILRSMSRKVITNKLLLSVIIVLELAILVGLVYYKFFR 230

V-SNARE that mediates vesicle transport pathways through interactions with t-SNAREs on the target membrane. These interactions are proposed to mediate aspects of the specificity of vesicle trafficking and to promote fusion of the lipid bilayers.

Rattus norvegicus (taxid: 10116)

>sp|Q2KIU0|VTI1B_BOVIN Vesicle transport through interaction with t-SNAREs homolog 1B OS=Bos taurus GN=VTI1B PE=2 SV=1

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 66/103 (64%)

Query: 6   RETLRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHV 65
           R  L +   +L R  +SI RS + A E + IG+ +I ELG QR+ L R + RLV+T  ++
Sbjct: 129 RALLLQGTDSLNRATQSIERSHRIAAETDQIGSEIIEELGEQRDQLERTKSRLVNTSENL 188

Query: 66  SRSRRMIQAIRRRVFYNKLFLIMIIVIESMTLSVMLYLKIFKK 108
           S+SR++++++ R+V  NKL L ++I++E   L  ++Y K  ++
Sbjct: 189 SKSRKILRSMSRKVTTNKLLLSIVILLELAILGGLVYYKFLRR 231

V-SNARE that mediates vesicle transport pathways through interactions with t-SNAREs on the target membrane. These interactions are proposed to mediate aspects of the specificity of vesicle trafficking and to promote fusion of the lipid bilayers. May be concerned with increased secretion of cytokines associated with cellular senescence.

Bos taurus (taxid: 9913)

>sp|Q9UEU0|VTI1B_HUMAN Vesicle transport through interaction with t-SNAREs homolog 1B OS=Homo sapiens GN=VTI1B PE=1 SV=3

 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 64/94 (68%)

Query: 14  QALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQ 73
           ++L R  +SI RS + A E + IG+ +I ELG QR+ L R + RLV+T  ++S+SR++++
Sbjct: 137 ESLNRATQSIERSHRIATETDQIGSEIIEELGEQRDQLERTKSRLVNTSENLSKSRKILR 196

Query: 74  AIRRRVFYNKLFLIMIIVIESMTLSVMLYLKIFK 107
           ++ R+V  NKL L +II++E   L  ++Y K F+
Sbjct: 197 SMSRKVTTNKLLLSIIILLELAILGGLVYYKFFR 230

V-SNARE that mediates vesicle transport pathways through interactions with t-SNAREs on the target membrane. These interactions are proposed to mediate aspects of the specificity of vesicle trafficking and to promote fusion of the lipid bilayers. May be concerned with increased secretion of cytokines associated with cellular senescence.

Homo sapiens (taxid: 9606)

>sp|O89116|VTI1A_MOUSE Vesicle transport through interaction with t-SNAREs homolog 1A OS=Mus musculus GN=Vti1a PE=1 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 57/102 (55%), Gaps = 2/102 (1%)

Query: 5   HRETLRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLH 64
            R  L +  + L R+   +    Q A+E E IG  ++  L   RE + RARDRL D D +
Sbjct: 114 QRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARDRLRDADAN 173

Query: 65  VSRSRRMIQAIRRRVFYNKLFLIM--IIVIESMTLSVMLYLK 104
           + +S R++  + RR+  N++ L++  IIV+ ++  ++  ++K
Sbjct: 174 LGKSSRILTGMLRRIIQNRILLVILGIIVVIAILTAIAFFVK 215

V-SNARE that mediates vesicle transport pathways through interactions with t-SNAREs on the target membrane. These interactions are proposed to mediate aspects of the specificity of vesicle trafficking and to promote fusion of the lipid bilayers. Involved in vesicular transport from the late endosomes to the trans-Golgi network. Along with VAMP7, involved in an non-conventional RAB1-dependent traffic route to the cell surface used by KCNIP1 and KCND2. May be concerned with increased secretion of cytokines associated with cellular senescence.

Mus musculus (taxid: 10090)

>sp|Q9LVP9|VTI13_ARATH Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana GN=VTI13 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 52/90 (57%)

Query: 16  LVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAI 75
           L RT + I  S +  LE E +G  ++ +L  QR++L+RA + L   D +V +S++++  +
Sbjct: 130 LGRTTDRIKDSRRTILETEELGVSILQDLHGQRQSLLRAHETLHGVDDNVGKSKKILTTM 189

Query: 76  RRRVFYNKLFLIMIIVIESMTLSVMLYLKI 105
            RR+  NK  +  II +  + +  +LY K+
Sbjct: 190 TRRMNRNKWTIGAIITVLVLAIIFILYFKL 219

May function as a v-SNARE responsible for targeting vesicles involved in the secretory pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|Q96AJ9|VTI1A_HUMAN Vesicle transport through interaction with t-SNAREs homolog 1A OS=Homo sapiens GN=VTI1A PE=1 SV=2

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 50/88 (56%)

Query: 5   HRETLRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLH 64
            R  L +  + L R+   +    Q A+E E IG  ++  L   RE + RAR+RL +TD +
Sbjct: 114 QRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARERLRETDAN 173

Query: 65  VSRSRRMIQAIRRRVFYNKLFLIMIIVI 92
           + +S R++  + RR+  N++ L+++ +I
Sbjct: 174 LGKSSRILTGMLRRIIQNRILLVILGII 201

V-SNARE that mediates vesicle transport pathways through interactions with t-SNAREs on the target membrane. These interactions are proposed to mediate aspects of the specificity of vesicle trafficking and to promote fusion of the lipid bilayers. Involved in vesicular transport from the late endosomes to the trans-Golgi network. Along with VAMP7, involved in an non-conventional RAB1-dependent traffic route to the cell surface used by KCNIP1 and KCND2. May be involved in increased cytokine secretion associated with cellular senescence.

Homo sapiens (taxid: 9606)

>sp|Q9JI51|VTI1A_RAT Vesicle transport through interaction with t-SNAREs homolog 1A OS=Rattus norvegicus GN=Vti1a PE=1 SV=1

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 7/91 (7%)

Query: 9   LRETNQALVRTGESIVRSE-------QAALEAEAIGTGVISELGVQREALVRARDRLVDT 61
           LRE    L+   E + RS        Q A+E E IG  ++  L   RE + RAR+RL +T
Sbjct: 118 LREERAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRET 177

Query: 62  DLHVSRSRRMIQAIRRRVFYNKLFLIMIIVI 92
           D ++ +S R++  + RR+  N++ L+++ +I
Sbjct: 178 DANLGKSSRILTGMLRRIIQNRILLVILGII 208

V-SNARE that mediates vesicle transport pathways through interactions with t-SNAREs on the target membrane. These interactions are proposed to mediate aspects of the specificity of vesicle trafficking and to promote fusion of the lipid bilayers. Involved in vesicular transport from the late endosomes to the trans-Golgi network. Along with VAMP7, involved in an non-conventional RAB1-dependent traffic route to the cell surface used by KCNIP1 and KCND2 (By similarity). May be concerned with increased secretion of cytokines associated with cellular senescence.

Rattus norvegicus (taxid: 10116)

>sp|Q54CK6|VTI1A_DICDI Vesicle transport through interaction with t-SNAREs homolog 1A OS=Dictyostelium discoideum GN=vti1A PE=1 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 47/79 (59%)

Query: 6   RETLRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHV 65
           R+ L + +  L  T + ++R+ Q + ++E IG  ++ +LG Q E +   RD+L +TD  +
Sbjct: 116 RQHLLQGSNMLDSTSDRLLRTHQISAQSEQIGQNILMDLGKQGEQIRGMRDKLHETDDQI 175

Query: 66  SRSRRMIQAIRRRVFYNKL 84
             +R+++  I RR+  NK+
Sbjct: 176 KSARKIMTGIARRLATNKV 194

V-SNARE that mediates vesicle transport pathways through interactions with t-SNAREs on the target membrane. These interactions are proposed to mediate aspects of the specificity of vesicle trafficking and to promote fusion of the lipid bilayers.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9SEL6|VTI11_ARATH Vesicle transport v-SNARE 11 OS=Arabidopsis thaliana GN=VTI11 PE=1 SV=2

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 53/92 (57%)

Query: 16  LVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAI 75
           L RT + +  S +  +E E IG  ++ +L  QR++L+RA + L   D ++ +S++++  +
Sbjct: 130 LGRTTDRVKDSRRTMMETEEIGVSILQDLHGQRQSLLRAHETLHGVDDNIGKSKKILTDM 189

Query: 76  RRRVFYNKLFLIMIIVIESMTLSVMLYLKIFK 107
            RR+  NK  +  II+     + ++LY K+ K
Sbjct: 190 TRRMNKNKWTIGAIIIALIAAIFIILYFKLTK 221

May function as a v-SNARE responsible for targeting AtELP-containing vesicles from the trans-Golgi network (TGN) to the prevacuolar compartment (PVC). May be also involved in retrograde traffic to the cis-Golgi.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
321479332	227	hypothetical protein DAPPUDRAFT_299903 [	0.908	0.436	0.494	1e-17
405973002	181	Vesicle transport through interaction wi	0.981	0.591	0.457	4e-17
312372523	112	hypothetical protein AND_30241 [Anophele	0.917	0.892	0.48	3e-16
443693796	222	hypothetical protein CAPTEDRAFT_161960 [	0.990	0.486	0.416	7e-16
346469721	227	hypothetical protein [Amblyomma maculatu	0.954	0.458	0.451	2e-15
41054742	225	vesicle transport through interaction wi	0.954	0.462	0.451	2e-15
383858688	113	PREDICTED: vesicle transport through int	0.972	0.938	0.490	8e-15
348515987	226	PREDICTED: vesicle transport through int	0.862	0.415	0.478	8e-15
410925598	224	PREDICTED: vesicle transport through int	0.972	0.473	0.433	9e-15
118783148	111	AGAP003112-PA [Anopheles gambiae str. PE	0.935	0.918	0.460	2e-14

>gi|321479332|gb|EFX90288.1| hypothetical protein DAPPUDRAFT_299903 [Daphnia pulex]

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/99 (49%), Positives = 68/99 (68%)

Query: 8   TLRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSR 67
           T+R+    L RT +S+ R+ Q ALE+E IGTGVI EL  QRE LVR RDRL +TD  + R
Sbjct: 128 TVRQGTAILERTSQSLYRTTQVALESEDIGTGVIQELSQQREVLVRTRDRLTETDAELGR 187

Query: 68  SRRMIQAIRRRVFYNKLFLIMIIVIESMTLSVMLYLKIF 106
           SRR+++++ R    NKL LI+II++E   L+ ++Y K F
Sbjct: 188 SRRILKSMSRVAMTNKLVLIVIILLEICILTGLVYYKFF 226

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405973002|gb|EKC37742.1| Vesicle transport through interaction with t-SNAREs-like protein 1B [Crassostrea gigas]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/107 (45%), Positives = 69/107 (64%)

Query: 1   MEKIHRETLRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVD 60
           +E   R  L E  Q L RT +SI RS Q + E + IG   I ELG QRE L R RDRLVD
Sbjct: 75  VEASQRAKLMEGTQILNRTTDSIARSHQISAETDQIGVETIDELGRQREVLERTRDRLVD 134

Query: 61  TDLHVSRSRRMIQAIRRRVFYNKLFLIMIIVIESMTLSVMLYLKIFK 107
           TD ++SRSR++++ +  RV  NK+ LI++I++E   L ++++ K FK
Sbjct: 135 TDTNLSRSRKILKTMAMRVMTNKMILIVVILVELAILGIVIWWKFFK 181

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|312372523|gb|EFR20467.1| hypothetical protein AND_30241 [Anopheles darlingi]

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/100 (48%), Positives = 71/100 (71%)

Query: 5   HRETLRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLH 64
           HR+ + +  Q L RT  S+ RS Q A+E E  G  VISEL VQRE+L+R++ RL + + H
Sbjct: 10  HRQQVLQGRQILERTSASLARSNQIAIETEHTGHEVISELEVQRESLLRSQRRLENANEH 69

Query: 65  VSRSRRMIQAIRRRVFYNKLFLIMIIVIESMTLSVMLYLK 104
           +S+S  +++A++R V YNKL LI+IIV+E + L+ M+YLK
Sbjct: 70  LSKSGAILRAMKRNVLYNKLILILIIVMEVVILAGMIYLK 109

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443693796|gb|ELT95070.1| hypothetical protein CAPTEDRAFT_161960 [Capitella teleta]

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 70/108 (64%)

Query: 1   MEKIHRETLRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVD 60
           +E   R  L + +Q L  T +SI RS Q A E + + T VI ELG QRE+L+R RDRL +
Sbjct: 115 LESAQRSRLMQGSQILQGTTDSISRSHQIAAETDMVATDVIDELGTQRESLIRTRDRLHE 174

Query: 61  TDLHVSRSRRMIQAIRRRVFYNKLFLIMIIVIESMTLSVMLYLKIFKK 108
           TD ++S+S ++++ + +RV  NK+ L++II++E   L  ++Y K F K
Sbjct: 175 TDENLSKSNKILKGMAKRVMTNKMILVVIILLEMAILGGVVYWKFFSK 222

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|346469721|gb|AEO34705.1| hypothetical protein [Amblyomma maculatum]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 67/104 (64%)

Query: 5   HRETLRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLH 64
            R  L + N+ L RT +S+ R+ Q A E + IGT V  EL  QRE+LVR ++RL +TD +
Sbjct: 124 QRSRLLQMNETLDRTTDSLARTFQVAAETDQIGTAVAEELRTQRESLVRTKERLEETDQN 183

Query: 65  VSRSRRMIQAIRRRVFYNKLFLIMIIVIESMTLSVMLYLKIFKK 108
           +S SR++++ + RRV  NK+ LIMIIVIE   L  ++Y K   K
Sbjct: 184 LSTSRKILRTMYRRVMTNKMILIMIIVIEMCILGALIYWKFIMK 227

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|41054742|ref|NP_957330.1| vesicle transport through interaction with t-SNAREs homolog 1B [Danio rerio] gi|32766295|gb|AAH55131.1| Vesicle transport through interaction with t-SNAREs homolog 1B (yeast) [Danio rerio]

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 70/104 (67%)

Query: 5   HRETLRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLH 64
            R  L +  ++L    +SI RS++ A E + IGT +I ELG QRE L R RDRLV+T  +
Sbjct: 122 QRALLIQGTESLNNASKSIERSQRIAAETDQIGTDIIEELGEQREQLDRTRDRLVNTGEN 181

Query: 65  VSRSRRMIQAIRRRVFYNKLFLIMIIVIESMTLSVMLYLKIFKK 108
           +SRSR++++A+ RR+  NKL L +II++E   L  ++YLK F+K
Sbjct: 182 LSRSRKILRAMSRRIVTNKLLLSIIIIMEVAILGGVVYLKFFRK 225

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|383858688|ref|XP_003704831.1| PREDICTED: vesicle transport through interaction with t-SNAREs homolog 1B-like [Megachile rotundata]

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 52/106 (49%), Positives = 73/106 (68%)

Query: 1   MEKIHRETLRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVD 60
            E+ HR TL E N AL R+ +S+VRS+  A+E E IGT VISELG QRE L+R + RL  
Sbjct: 7   WEEEHRRTLLEGNAALARSAQSVVRSQALAIENEQIGTEVISELGEQRERLIRTKRRLSQ 66

Query: 61  TDLHVSRSRRMIQAIRRRVFYNKLFLIMIIVIESMTLSVMLYLKIF 106
           TD  + ++RR++  +RR+V  NK  LI+II++E   L +++YLK F
Sbjct: 67  TDEELDKTRRILNVMRRKVLMNKFVLILIILLEIAILGIIVYLKFF 112

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|348515987|ref|XP_003445521.1| PREDICTED: vesicle transport through interaction with t-SNAREs homolog 1B-like [Oreochromis niloticus]

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 45/94 (47%), Positives = 65/94 (69%)

Query: 15  ALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQA 74
           AL    +SI RS++ A E E IGT +I ELG QRE L R R+RL +T  ++SRSR++++A
Sbjct: 133 ALNNASQSIERSQRIAAETEQIGTDIIEELGEQREQLDRTRNRLANTGENLSRSRKILRA 192

Query: 75  IRRRVFYNKLFLIMIIVIESMTLSVMLYLKIFKK 108
           + RR+  NKL L +II++E   L  ++YLK F+K
Sbjct: 193 MSRRLVTNKLLLGIIILMELAILGAVIYLKFFRK 226

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410925598|ref|XP_003976267.1| PREDICTED: vesicle transport through interaction with t-SNAREs homolog 1B-like [Takifugu rubripes]

 Score = 84.3 bits (207), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 71/106 (66%)

Query: 2   EKIHRETLRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDT 61
           ++  R  L + +++L    +SI RS++ A E E IG  +I ELG QRE L R RDRLV+T
Sbjct: 119 QQSQRALLLQGSESLNTASQSIERSQRIATETEQIGNDIIEELGGQREQLDRTRDRLVNT 178

Query: 62  DLHVSRSRRMIQAIRRRVFYNKLFLIMIIVIESMTLSVMLYLKIFK 107
             ++SRSR++++++ RR+  NKL L +IIV+E   L  ++YLK F+
Sbjct: 179 GENLSRSRKILRSMSRRLVTNKLLLAVIIVMELAILGAVVYLKFFR 224

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|118783148|ref|XP_312794.3| AGAP003112-PA [Anopheles gambiae str. PEST] gi|116129074|gb|EAA08377.3| AGAP003112-PA [Anopheles gambiae str. PEST]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/102 (46%), Positives = 69/102 (67%)

Query: 5   HRETLRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLH 64
           HR+ + +  Q L RT  S+ RS Q A+E E  G  VI+EL VQRE+L+R++ RL + +  
Sbjct: 10  HRQQVLQGRQILERTSASLARSNQIAIETEHTGHEVINELEVQRESLLRSQRRLENANDD 69

Query: 65  VSRSRRMIQAIRRRVFYNKLFLIMIIVIESMTLSVMLYLKIF 106
           +S+S  +I+A++R V YNKL LIMIIV+E + L+ M+ LK  
Sbjct: 70  LSKSGAIIRAMKRNVLYNKLILIMIIVMEVVILAGMIALKFM 111

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
ZFIN|ZDB-GENE-040426-1148	225	vti1b "vesicle transport throu	0.944	0.457	0.388	5.6e-13
UNIPROTKB|E1BUX5	232	VTI1B "Uncharacterized protein	0.954	0.448	0.365	3.9e-12
MGI|MGI:1855688	232	Vti1b "vesicle transport throu	0.935	0.439	0.362	3.5e-11
RGD|1560475	232	RGD1560475 "similar to vesicle	0.935	0.439	0.362	4.5e-11
UNIPROTKB|P58200	232	Vti1b "Vesicle transport throu	0.935	0.439	0.362	4.5e-11
UNIPROTKB|Q9UEU0	232	VTI1B "Vesicle transport throu	0.935	0.439	0.352	1.2e-10
UNIPROTKB|F1N1Z0	232	VTI1B "Vesicle transport throu	0.944	0.443	0.339	1.5e-10
UNIPROTKB|F1SA25	232	VTI1B "Uncharacterized protein	0.944	0.443	0.339	2e-10
UNIPROTKB|Q2KIU0	232	VTI1B "Vesicle transport throu	0.944	0.443	0.330	7.7e-10
RGD|2323682	231	LOC100359512 "vesicle transpor	0.935	0.441	0.333	1.2e-08

ZFIN|ZDB-GENE-040426-1148 vti1b "vesicle transport through interaction with t-SNAREs homolog 1B (yeast)" [Danio rerio (taxid:7955)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 40/103 (38%), Positives = 58/103 (56%)

Query:     6 RETLRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHV 65
             R  L +  ++L    +SI RS++ A E + IGT +I ELG QRE L R RDRLV+T  ++
Sbjct:   123 RALLIQGTESLNNASKSIERSQRIAAETDQIGTDIIEELGEQREQLDRTRDRLVNTGENL 182

Query:    66 XXXXXXXXXXXXXVFYNKLFLIMIIVIESMTLSVMLYLKIFKK 108
                          +  NKL L +II++E   L  ++YLK F+K
Sbjct:   183 SRSRKILRAMSRRIVTNKLLLSIIIIMEVAILGGVVYLKFFRK 225

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|E1BUX5 VTI1B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 38/104 (36%), Positives = 56/104 (53%)

Query:     6 RETLRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHV 65
             R  L +  ++L R  +SI RS + A E + IGT +I ELG QRE L R + RLV+T  ++
Sbjct:   129 RVLLLQGTESLNRASQSIERSHRIAAETDQIGTDIIEELGEQREQLERTKSRLVNTSENL 188

Query:    66 XXXXXXXXXXXXXVFYNKLFLIMIIVIESMTLSVMLYLKIFKKR 109
                          +  NKL L +II++E   L  ++Y K F+ R
Sbjct:   189 SKSRKILRSMSRRIATNKLLLSIIIILELAILGGVVYYKFFRSR 232

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

MGI|MGI:1855688 Vti1b "vesicle transport through interaction with t-SNAREs 1B" [Mus musculus (taxid:10090)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 37/102 (36%), Positives = 56/102 (54%)

Query:     6 RETLRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHV 65
             R  L +  ++L R  +SI RS + A E + IGT +I ELG QR+ L R + RLV+T+ ++
Sbjct:   129 RALLLQGTESLNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENL 188

Query:    66 XXXXXXXXXXXXXVFYNKLFLIMIIVIESMTLSVMLYLKIFK 107
                          V  NKL L +II++E   L  ++Y K F+
Sbjct:   189 SKSRKILRSMSRKVITNKLLLSVIILLELAILVGLVYYKFFR 230

GO:0005515 "protein binding" evidence=IPI

GO:0005794 "Golgi apparatus" evidence=ISO;IDA

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

RGD|1560475 RGD1560475 "similar to vesicle transport through interaction with t-SNAREs 1B homolog" [Rattus norvegicus (taxid:10116)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 37/102 (36%), Positives = 56/102 (54%)

Query:     6 RETLRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHV 65
             R  L +  ++L R  +SI RS + A E + IG+ +I ELG QR+ L R + RLV+T+ ++
Sbjct:   129 RALLLQGTESLNRATQSIERSHRIAAETDQIGSEIIEELGEQRDQLERTKSRLVNTNENL 188

Query:    66 XXXXXXXXXXXXXVFYNKLFLIMIIVIESMTLSVMLYLKIFK 107
                          V  NKL L +IIV+E   L  ++Y K F+
Sbjct:   189 SKSRKILRSMSRKVITNKLLLSVIIVLELAILVGLVYYKFFR 230

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0012505 "endomembrane system" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0031201 "SNARE complex" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

UNIPROTKB|P58200 Vti1b "Vesicle transport through interaction with t-SNAREs homolog 1B" [Rattus norvegicus (taxid:10116)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 37/102 (36%), Positives = 56/102 (54%)

Query:     6 RETLRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHV 65
             R  L +  ++L R  +SI RS + A E + IG+ +I ELG QR+ L R + RLV+T+ ++
Sbjct:   129 RALLLQGTESLNRATQSIERSHRIAAETDQIGSEIIEELGEQRDQLERTKSRLVNTNENL 188

Query:    66 XXXXXXXXXXXXXVFYNKLFLIMIIVIESMTLSVMLYLKIFK 107
                          V  NKL L +IIV+E   L  ++Y K F+
Sbjct:   189 SKSRKILRSMSRKVITNKLLLSVIIVLELAILVGLVYYKFFR 230

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

UNIPROTKB|Q9UEU0 VTI1B "Vesicle transport through interaction with t-SNAREs homolog 1B" [Homo sapiens (taxid:9606)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 36/102 (35%), Positives = 55/102 (53%)

Query:     6 RETLRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHV 65
             R  L +  ++L R  +SI RS + A E + IG+ +I ELG QR+ L R + RLV+T  ++
Sbjct:   129 RAMLLQGTESLNRATQSIERSHRIATETDQIGSEIIEELGEQRDQLERTKSRLVNTSENL 188

Query:    66 XXXXXXXXXXXXXVFYNKLFLIMIIVIESMTLSVMLYLKIFK 107
                          V  NKL L +II++E   L  ++Y K F+
Sbjct:   189 SKSRKILRSMSRKVTTNKLLLSIIILLELAILGGLVYYKFFR 230

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0012505 "endomembrane system" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=TAS

GO:0006904 "vesicle docking involved in exocytosis" evidence=TAS

GO:0006944 "cellular membrane fusion" evidence=TAS

GO:0008283 "cell proliferation" evidence=TAS

UNIPROTKB|F1N1Z0 VTI1B "Vesicle transport through interaction with t-SNAREs homolog 1B" [Bos taurus (taxid:9913)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 35/103 (33%), Positives = 55/103 (53%)

Query:     6 RETLRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHV 65
             R  L +   +L R  +SI RS + A E + IG+ +I ELG QR+ L R + RLV+T  ++
Sbjct:   129 RALLLQGTDSLNRATQSIERSHRIAAETDQIGSEIIEELGEQRDQLERTKSRLVNTSENL 188

Query:    66 XXXXXXXXXXXXXVFYNKLFLIMIIVIESMTLSVMLYLKIFKK 108
                          V  NKL L ++I++E   L  ++Y K F++
Sbjct:   189 SKSRKILRSMSRKVTTNKLLLSIVILLELAILGGLVYYKFFRR 231

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|F1SA25 VTI1B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 35/103 (33%), Positives = 55/103 (53%)

Query:     6 RETLRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHV 65
             R  L +   +L R  +SI RS + A E + IG+ +I ELG QR+ L R + RLV+T  ++
Sbjct:   129 RVLLLQGTDSLNRATQSIERSHRIAAETDQIGSEIIEELGEQRDQLERTKSRLVNTSENL 188

Query:    66 XXXXXXXXXXXXXVFYNKLFLIMIIVIESMTLSVMLYLKIFKK 108
                          V  NKL L ++I++E   L  ++Y K F++
Sbjct:   189 SKSRKILRSMSRKVTTNKLLLSIVILLELAILGGLVYYKFFRR 231

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|Q2KIU0 VTI1B "Vesicle transport through interaction with t-SNAREs homolog 1B" [Bos taurus (taxid:9913)]

 Score = 142 (55.0 bits), Expect = 7.7e-10, P = 7.7e-10
 Identities = 34/103 (33%), Positives = 54/103 (52%)

Query:     6 RETLRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHV 65
             R  L +   +L R  +SI RS + A E + IG+ +I ELG QR+ L R + RLV+T  ++
Sbjct:   129 RALLLQGTDSLNRATQSIERSHRIAAETDQIGSEIIEELGEQRDQLERTKSRLVNTSENL 188

Query:    66 XXXXXXXXXXXXXVFYNKLFLIMIIVIESMTLSVMLYLKIFKK 108
                          V  NKL L ++I++E   L  ++Y K  ++
Sbjct:   189 SKSRKILRSMSRKVTTNKLLLSIVILLELAILGGLVYYKFLRR 231

GO:0012505 "endomembrane system" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

RGD|2323682 LOC100359512 "vesicle transport through interaction with t-SNAREs 1B-like" [Rattus norvegicus (taxid:10116)]

 Score = 132 (51.5 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 34/102 (33%), Positives = 52/102 (50%)

Query:     6 RETLRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHV 65
             R  L +  ++L R  +SI RS + A E + IG+ +I ELG QR+ L R + RLV+T+ ++
Sbjct:   128 RALLLQGTESLNRATQSIERSHRIAAETDQIGSEIIEELGEQRDQLERTKSRLVNTNENL 187

Query:    66 XXXXXXXXXXXXXVFYNKLFLIMIIVIESMTLSVMLYLKIFK 107
                             N L    IIV+E   L  ++Y K F+
Sbjct:   188 SKSRKILRSMSRNNLTNTLINYXIIVLELAILVGLVYYKFFR 229

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	109
pfam12352	66	pfam12352, V-SNARE_C, Snare region anchored in the	1e-07

>gnl|CDD|152787 pfam12352, V-SNARE_C, Snare region anchored in the vesicle membrane C-terminus

 Score = 44.9 bits (107), Expect = 1e-07
 Identities = 22/66 (33%), Positives = 38/66 (57%)

Query: 14 QALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQ 73
          + L+R  + +  S + A E  +IG  ++ +L  QRE L RAR++L +TD  + +S   ++
Sbjct: 1  ERLLREHDRLKNSHRIADETISIGQAILEDLHSQRETLKRARNKLHNTDNRLGKSNSTLR 60

Query: 74 AIRRRV 79
           I RR 
Sbjct: 61 LINRRR 66

Within the SNARE proteins interactions in the C-terminal half of the SNARE helix are critical to the driving of membrane fusion; whereas interactions in the N-terminal half of the SNARE domain are important for promoting priming or docking of the vesicle pfam05008. Length = 66

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	109
KOG1666|consensus	220		100.0
PF12352	66	V-SNARE_C: Snare region anchored in the vesicle me	99.7
PF03908	92	Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr	99.54
KOG3251|consensus	213		99.53
KOG3208|consensus	231		98.82
KOG0812|consensus	311		98.51
KOG3065|consensus	273		98.39
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	98.32
smart00397	66	t_SNARE Helical region found in SNAREs. All alpha-	98.07
KOG3202|consensus	235		97.87
KOG0860|consensus	116		97.81
COG5074	280	t-SNARE complex subunit, syntaxin [Intracellular t	97.53
KOG0810|consensus	297		97.37
PF05739	63	SNARE: SNARE domain; InterPro: IPR000727 The proce	97.37
PF09753	251	Use1: Membrane fusion protein Use1; InterPro: IPR0	97.29
KOG0811|consensus	269		97.29
COG5325	283	t-SNARE complex subunit, syntaxin [Intracellular t	97.24
PRK10884	206	SH3 domain-containing protein; Provisional	97.19
KOG3385|consensus	118		97.07
KOG2678|consensus	244		97.04
KOG3894|consensus	316		97.02
cd00193	60	t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu	97.02
KOG0809|consensus	305		95.43
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	95.17
PRK01026	77	tetrahydromethanopterin S-methyltransferase subuni	95.11
PF04210	70	MtrG: Tetrahydromethanopterin S-methyltransferase,	95.02
TIGR01149	70	mtrG N5-methyltetrahydromethanopterin:coenzyme M m	94.02
PF12911	56	OppC_N: N-terminal TM domain of oligopeptide trans	93.1
COG4064	75	MtrG Tetrahydromethanopterin S-methyltransferase,	92.91
KOG3065|consensus	273		92.88
PF09889	59	DUF2116: Uncharacterized protein containing a Zn-r	92.28
KOG0859|consensus	217		90.54
PF07423	217	DUF1510: Protein of unknown function (DUF1510); In	89.65
PRK10132	108	hypothetical protein; Provisional	89.47
PF12669	58	P12: Virus attachment protein p12 family	88.83
PHA03240	258	envelope glycoprotein M; Provisional	87.58
PF08114	43	PMP1_2: ATPase proteolipid family; InterPro: IPR01	87.53
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	87.24
PF04678	180	DUF607: Protein of unknown function, DUF607; Inter	87.13
KOG0862|consensus	216		87.08
PTZ00382	96	Variant-specific surface protein (VSP); Provisiona	86.22
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	85.94
PF05283	186	MGC-24: Multi-glycosylated core protein 24 (MGC-24	85.71
PF02439	38	Adeno_E3_CR2: Adenovirus E3 region protein CR2; In	85.59
PHA02844	75	putative transmembrane protein; Provisional	84.82
PF08693	40	SKG6: Transmembrane alpha-helix domain; InterPro:	84.67
PHA02650	81	hypothetical protein; Provisional	84.36
PF00523	490	Fusion_gly: Fusion glycoprotein F0; InterPro: IPR0	84.26
PF09889	59	DUF2116: Uncharacterized protein containing a Zn-r	83.66
PTZ00464	211	SNF-7-like protein; Provisional	83.61
PF10151	469	DUF2359: Uncharacterised conserved protein (DUF235	82.95
PF14283	218	DUF4366: Domain of unknown function (DUF4366)	81.22
PF12352	66	V-SNARE_C: Snare region anchored in the vesicle me	80.76

>KOG1666|consensus

Probab=100.00  E-value=1.6e-32  Score=198.00  Aligned_cols=105  Identities=33%  Similarity=0.539  Sum_probs=103.6

Q ss_pred             chHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHHHHHh
Q psy11502          2 EKIHRETLRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRRVFY   81 (109)
Q Consensus         2 ~~~~R~~ll~~~~~l~~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~rr~~~   81 (109)
                      +.+||.+||+|++++++++++|.+|+|++.|||+||.+|+++|+.|||+|+++++.+.++|+++++|+++|+.|.||+++
T Consensus       116 ~~dQR~rLl~nTerLeRst~rl~ds~Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~  195 (220)
T KOG1666|consen  116 SADQRARLLQNTERLERSTDRLKDSQRIALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLIR  195 (220)
T ss_pred             chhHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHH
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11502         82 NKLFLIMIIVIESMTLSVMLYLKIF  106 (109)
Q Consensus        82 ~K~il~~ii~~l~l~i~~viy~k~~  106 (109)
                      |||++++||++++++|++++|+||+
T Consensus       196 nk~~~~aii~~l~~~il~ilY~kf~  220 (220)
T KOG1666|consen  196 NKFTLTAIIALLVLAILLILYSKFT  220 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999995

>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C

Probab=99.70  E-value=2.3e-16  Score=95.57  Aligned_cols=66  Identities=38%  Similarity=0.582  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHHHH
Q psy11502         14 QALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRRV   79 (109)
Q Consensus        14 ~~l~~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~rr~   79 (109)
                      +.+.+++++|++|.++++||+++|.+|+.+|..|||+|.++++++++++++++.|+++++.|.||.
T Consensus         1 d~l~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR~   66 (66)
T PF12352_consen    1 DRLLRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRRK   66 (66)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHccC
Confidence            467899999999999999999999999999999999999999999999999999999999999984

>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway

Probab=99.54  E-value=4.1e-13  Score=86.36  Aligned_cols=88  Identities=14%  Similarity=0.231  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy11502         17 VRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRRVFYNKLFLIMIIVIESMT   96 (109)
Q Consensus        17 ~~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~rr~~~~K~il~~ii~~l~l~   96 (109)
                      .+-++.|.++++++.+..+-|..+++.|.+|.++|..+++..+++++.++.|+++++.+.|+..+||+++|+.++++++.
T Consensus         4 ~~vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~~   83 (92)
T PF03908_consen    4 SDVTESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLLV   83 (92)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999888777


Q ss_pred             HHHHHHHH
Q psy11502         97 LSVMLYLK  104 (109)
Q Consensus        97 i~~viy~k  104 (109)
                      +++|+|..
T Consensus        84 v~yI~~rR   91 (92)
T PF03908_consen   84 VLYILWRR   91 (92)
T ss_pred             HHHHhhhc
Confidence            77777643

>KOG3251|consensus

Probab=99.53  E-value=2.1e-13  Score=99.17  Aligned_cols=87  Identities=20%  Similarity=0.286  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy11502         18 RTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRRVFYNKLFLIMIIVIESMTL   97 (109)
Q Consensus        18 ~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~rr~~~~K~il~~ii~~l~l~i   97 (109)
                      +-.+++.+|++.++|.-+.|.+|+++|..||-.|.++++++.++-..+|-|+.+|+.|.||...||+|+|+.++++++++
T Consensus       126 ~~~d~l~~s~~~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~~~Dk~iF~~G~i~~~v~~  205 (213)
T KOG3251|consen  126 QENDSLKRSHNMLDDLLESGSAILENLVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERRVREDKIIFYGGVILTLVIM  205 (213)
T ss_pred             HhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            45588999999999999999999999999999999999999999999999999999999999999999999998886644


Q ss_pred             HHHHHHHH
Q psy11502         98 SVMLYLKI  105 (109)
Q Consensus        98 ~~viy~k~  105 (109)
                      . .+|+||
T Consensus       206 y-l~~~wl  212 (213)
T KOG3251|consen  206 Y-LFYRWL  212 (213)
T ss_pred             H-HHHHHh
Confidence            4 444443

>KOG3208|consensus

Probab=98.82  E-value=1e-07  Score=69.80  Aligned_cols=77  Identities=16%  Similarity=0.166  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy11502         18 RTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRRVFYNKLFLIMIIVIES   94 (109)
Q Consensus        18 ~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~rr~~~~K~il~~ii~~l~   94 (109)
                      +-.++|++|.+.++|..+++.++-++|+.||..+.+++.++.++..-.---+.++..|.+|--+|-+|+.++|.+++
T Consensus       146 kE~~~in~s~~~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk~kkrrdslILa~Vis~C~  222 (231)
T KOG3208|consen  146 KEHDHINNSIRLVDELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKIKIKKRRDSLILAAVISVCT  222 (231)
T ss_pred             HHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999997773

>KOG0812|consensus

Probab=98.51  E-value=7.3e-06  Score=62.32  Aligned_cols=91  Identities=19%  Similarity=0.225  Sum_probs=75.4

Q ss_pred             hHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHHHHHh
Q psy11502          3 KIHRETLRETNQ-ALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRRVFY   81 (109)
Q Consensus         3 ~~~R~~ll~~~~-~l~~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~rr~~~   81 (109)
                      +++...++..++ -..+=...+++.+....|.-+|=.+...-...|+|.+.|+++++++++.+++-|...|....-|+-.
T Consensus       208 qqqQm~ll~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSS  287 (311)
T KOG0812|consen  208 QQQQMALLDESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSS  287 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhcc
Confidence            345566666653 3344456677778888888888888888889999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHH
Q psy11502         82 NKLFLIMIIVIE   93 (109)
Q Consensus        82 ~K~il~~ii~~l   93 (109)
                      |+|.++=|++++
T Consensus       288 NRwLmvkiF~i~  299 (311)
T KOG0812|consen  288 NRWLMVKIFGIL  299 (311)
T ss_pred             chHHHHHHHHHH
Confidence            999998776655

>KOG3065|consensus

Probab=98.39  E-value=4.2e-06  Score=63.47  Aligned_cols=73  Identities=21%  Similarity=0.236  Sum_probs=63.2

Q ss_pred             HHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHH
Q psy11502          5 HRETLRETN-QALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRR   77 (109)
Q Consensus         5 ~R~~ll~~~-~~l~~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~r   77 (109)
                      ..+.|.+.- .....+.++-.++.+++.|+++.|..|+..|..|+|||.++.+.+++++.++.+|.+.+..+..
T Consensus        62 ~~~~l~~e~~~~~~eSl~St~~~L~~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l~~  135 (273)
T KOG3065|consen   62 EVDELEQEIESTAQESLKSTRRMLKLAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTELKG  135 (273)
T ss_pred             HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            444444433 3346888999999999999999999999999999999999999999999999999999998764

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=98.32  E-value=7.3e-05  Score=47.30  Aligned_cols=85  Identities=15%  Similarity=0.284  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy11502         21 ESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRRVFYNKLFLIMIIVIESMTLSVM  100 (109)
Q Consensus        21 ~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~rr~~~~K~il~~ii~~l~l~i~~v  100 (109)
                      +.+...+.-++|+.++-.+-+..+-+..|.|....++.++...+...=.+.-+.+.|+++-.++-+++++++++++++++
T Consensus         3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~~   82 (89)
T PF00957_consen    3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIIIIVIIIILI   82 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhH
Confidence            56677788888888888888999999999999999999999998888888888899998888887777777776666666


Q ss_pred             HHHHH
Q psy11502        101 LYLKI  105 (109)
Q Consensus       101 iy~k~  105 (109)
                      +++-+
T Consensus        83 i~~~~   87 (89)
T PF00957_consen   83 IIIVI   87 (89)
T ss_dssp             HHHTT
T ss_pred             HHHHH
Confidence            66544

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

>smart00397 t_SNARE Helical region found in SNAREs

Probab=98.07  E-value=7.2e-05  Score=43.80  Aligned_cols=62  Identities=23%  Similarity=0.258  Sum_probs=56.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHH
Q psy11502         13 NQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQA   74 (109)
Q Consensus        13 ~~~l~~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~   74 (109)
                      ...+++..+.|.+..+.+.+..++|.++...+..|.+.|.++..+++.++..+..|.+-++.
T Consensus         4 ~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~   65 (66)
T smart00397        4 DQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKK   65 (66)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence            45677888999999999999999999999999999999999999999999999999877654

All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".

>KOG3202|consensus

Probab=97.87  E-value=0.00073  Score=50.38  Aligned_cols=89  Identities=13%  Similarity=0.115  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy11502         14 QALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRRVFYNKLFLIMIIVIE   93 (109)
Q Consensus        14 ~~l~~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~rr~~~~K~il~~ii~~l   93 (109)
                      +-++++...|+.-...+.-..++|..+-++|..|..-|..-...++.+++-+.+..+-+..|.+  ....|=.|++++++
T Consensus       145 qm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~--~~s~~~~~~~il~l  222 (235)
T KOG3202|consen  145 QMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNR--MASQCSQWCAILLL  222 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhccccchhHHHHH
Confidence            3445666777777788888899999999999999999999999999999999999999999999  34444444455555


Q ss_pred             HHHHHHHHHHH
Q psy11502         94 SMTLSVMLYLK  104 (109)
Q Consensus        94 ~l~i~~viy~k  104 (109)
                      ++++++++..+
T Consensus       223 ~~~~~lvv~i~  233 (235)
T KOG3202|consen  223 VGLLLLVVIIF  233 (235)
T ss_pred             HHHHHHHHHHh
Confidence            45555554433

>KOG0860|consensus

Probab=97.81  E-value=0.0012  Score=44.19  Aligned_cols=84  Identities=12%  Similarity=0.173  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHH----HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy11502         19 TGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVS----RSRRMIQAIRRRVFYNKLFLIMIIVIES   94 (109)
Q Consensus        19 t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~----~a~~~l~~m~rr~~~~K~il~~ii~~l~   94 (109)
                      +++.+.+++.-++|+.+|-.+=.+..-+--|.|....++.+.....-+    .|.++=+.|-.+.++-++++++++++++
T Consensus        27 ~~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~~il~~v~~i~l  106 (116)
T KOG0860|consen   27 ANDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMRIILGLVIIILL  106 (116)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356777777778888887777666666666777666666665544433    3667777777788888888888887776


Q ss_pred             HHHHHHHH
Q psy11502         95 MTLSVMLY  102 (109)
Q Consensus        95 l~i~~viy  102 (109)
                      ++|++.+|
T Consensus       107 ~iiii~~~  114 (116)
T KOG0860|consen  107 VVIIIYIF  114 (116)
T ss_pred             HHHHHHHh
Confidence            66655554

>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=97.53  E-value=0.0014  Score=49.02  Aligned_cols=80  Identities=15%  Similarity=0.129  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHH----HHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy11502         21 ESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSR----RMIQAIRRRVFYNKLFLIMIIVIESMT   96 (109)
Q Consensus        21 ~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~----~~l~~m~rr~~~~K~il~~ii~~l~l~   96 (109)
                      +.|...++++.|.-++=...-+....|.|....+.+.+.+...+++.+.    +-++. +|.+..+||+-|+|+++.+++
T Consensus       185 ~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~Avks-aRaaRkkki~c~gI~~iii~v  263 (280)
T COG5074         185 QEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKS-ARAARKKKIRCYGICFIIIIV  263 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHH-HHHHHhcceehhhhHHHHHHH
Confidence            5677788888888888888888888999999999999999988888865    45566 788899999999888766544


Q ss_pred             HHHHH
Q psy11502         97 LSVML  101 (109)
Q Consensus        97 i~~vi  101 (109)
                      |++|+
T Consensus       264 iv~vv  268 (280)
T COG5074         264 IVVVV  268 (280)
T ss_pred             HHHHH
Confidence            44443

>KOG0810|consensus

Probab=97.37  E-value=0.0046  Score=47.57  Aligned_cols=81  Identities=15%  Similarity=0.172  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHH
Q psy11502         18 RTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQ---AIRRRVFYNKLFLIMIIVIES   94 (109)
Q Consensus        18 ~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~---~m~rr~~~~K~il~~ii~~l~   94 (109)
                      .=.+.+.+-++.+.|..++=.+...--..|.|.+.++..+|....+.+++|..-++   .-.+++.+.|||.++++++++
T Consensus       203 ~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~iii~  282 (297)
T KOG0810|consen  203 ERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIIIIILIIII  282 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeeehHHHHHH
Confidence            33456666777788888888888888889999999999999999999999998888   566666666666655555443


Q ss_pred             HHHH
Q psy11502         95 MTLS   98 (109)
Q Consensus        95 l~i~   98 (109)
                      ++++
T Consensus       283 ~v~v  286 (297)
T KOG0810|consen  283 VVLV  286 (297)
T ss_pred             HHHh
Confidence            3333

>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]

Probab=97.37  E-value=0.0066  Score=35.56  Aligned_cols=59  Identities=17%  Similarity=0.193  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHHH
Q psy11502         20 GESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRR   78 (109)
Q Consensus        20 ~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~rr   78 (109)
                      .+.|..-...+.+..+++.++-.++..|.+.|.++..+++.+...+..+.+-|....+.
T Consensus         3 d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~   61 (63)
T PF05739_consen    3 DEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKY   61 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45677788888999999999999999999999999999999999999999988887765

Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....

>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport

Probab=97.29  E-value=0.0099  Score=44.28  Aligned_cols=74  Identities=12%  Similarity=0.210  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHh
Q psy11502         31 LEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRRVFYNKLFLIMIIV-IESMTLSVMLYLKIF  106 (109)
Q Consensus        31 ~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~rr~~~~K~il~~ii~-~l~l~i~~viy~k~~  106 (109)
                      ....+-....-..|....+.|.++...++.--+.++.+..-++.+.++-+.  |+.|++++ ++++.|+.|+|.|+|
T Consensus       177 ~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~--~~~~~~i~~v~~~Fi~mvl~iri~  251 (251)
T PF09753_consen  177 RQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWG--CWTWLMIFVVIIVFIMMVLFIRIF  251 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHheeC
Confidence            333444444556788899999999999999999999999889998776555  66665444 333444444555543

They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].

>KOG0811|consensus

Probab=97.29  E-value=0.015  Score=44.18  Aligned_cols=89  Identities=10%  Similarity=0.100  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHH
Q psy11502         16 LVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRR---VFYNKLFLIMIIVI   92 (109)
Q Consensus        16 l~~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~rr---~~~~K~il~~ii~~   92 (109)
                      ++.-.+.+.+-++-+.|..+|=.+-..--+.|.+.+..+.++++....++..|..-|+.=++-   ...-+|++.+++++
T Consensus       175 ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~~~ll~v~~~  254 (269)
T KOG0811|consen  175 IEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKKCILLLVGGP  254 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHH
Confidence            344556667777777777777777777788999999999999999999999999888775443   33333555555555


Q ss_pred             HHHHHHHHHHHH
Q psy11502         93 ESMTLSVMLYLK  104 (109)
Q Consensus        93 l~l~i~~viy~k  104 (109)
                      .++++++++|+.
T Consensus       255 v~lii~l~i~~~  266 (269)
T KOG0811|consen  255 VGLIIGLIIAGI  266 (269)
T ss_pred             HHHHHHHHHHHh
Confidence            555566666654

>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=97.24  E-value=0.018  Score=43.80  Aligned_cols=86  Identities=17%  Similarity=0.138  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHH
Q psy11502         21 ESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQA-IRRRVFYNKLFLIMIIVIESMTLSV   99 (109)
Q Consensus        21 ~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~-m~rr~~~~K~il~~ii~~l~l~i~~   99 (109)
                      +.+.+-.+-..|..++=.+.-.=..+|.+...+++-+++.+..++.-|++-|.. +..+-.++||-+|+.+++++++.++
T Consensus       195 ~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~~Llil~vv~lfv  274 (283)
T COG5325         195 EEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRFYLLLILLVVLLFV  274 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchhhHHHHHHHHHHHH
Confidence            455555666666666666655556799999999999999999999999876654 5666788999999888888777766


Q ss_pred             HHHHHHh
Q psy11502        100 MLYLKIF  106 (109)
Q Consensus       100 viy~k~~  106 (109)
                      .+..+..
T Consensus       275 ~l~~kl~  281 (283)
T COG5325         275 SLIKKLR  281 (283)
T ss_pred             HHHHHhc
Confidence            6665554

>PRK10884 SH3 domain-containing protein; Provisional

Probab=97.19  E-value=0.036  Score=40.53  Aligned_cols=67  Identities=18%  Similarity=0.156  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy11502         31 LEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRRVFYNKLFLIMIIVIESMTLSVML  101 (109)
Q Consensus        31 ~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~rr~~~~K~il~~ii~~l~l~i~~vi  101 (109)
                      .+..+--.+...+|..+.++|.   ..+......++..+.-+....+....+ ||+||..++++.+++.+|
T Consensus       124 ~~~~~~~~~~~~~L~~~n~~L~---~~l~~~~~~~~~l~~~~~~~~~~~~~~-wf~~Gg~v~~~GlllGli  190 (206)
T PRK10884        124 QQKVAQSDSVINGLKEENQKLK---NQLIVAQKKVDAANLQLDDKQRTIIMQ-WFMYGGGVAGIGLLLGLL  190 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHchHHHHHHHHHHHH
Confidence            3333334455555666666663   345556666666666666666666555 555555555545454444

>KOG3385|consensus

Probab=97.07  E-value=0.0052  Score=41.15  Aligned_cols=64  Identities=16%  Similarity=0.105  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy11502         30 ALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRRVFYNKLFLIMIIVIES   94 (109)
Q Consensus        30 ~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~rr~~~~K~il~~ii~~l~   94 (109)
                      +.-...+.-+|-.+...|..-|.+.++..+.+.+-|+.+-.-++.|+|+ =.-+...|.++++++
T Consensus        45 V~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~-sg~~l~~~m~~f~lV  108 (118)
T KOG3385|consen   45 VKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR-SGISLLCWMAVFSLV  108 (118)
T ss_pred             HHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc-CCcchHHHHHHHHHH
Confidence            3334556667777889999999999999999999999999999999999 333444445554443

>KOG2678|consensus

Probab=97.04  E-value=0.065  Score=39.81  Aligned_cols=75  Identities=17%  Similarity=0.211  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy11502         34 EAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRRVFYNKLFLIMIIVIESMTLSVMLYLKIFKK  108 (109)
Q Consensus        34 e~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~rr~~~~K~il~~ii~~l~l~i~~viy~k~~~~  108 (109)
                      .+.+...-.-|....+.+.++...+|.-...|+..+.-+..-.+.-..+++-...+|++++..|..|++.+||||
T Consensus       168 KtnalAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~s~wf~~~miI~v~~sFVsMiliiqifkk  242 (244)
T KOG2678|consen  168 KTNALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKLSYWFYITMIIFVILSFVSMILIIQIFKK  242 (244)
T ss_pred             HHhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            334444456788899999999999999888899888888888888777777777777777788888899999986

>KOG3894|consensus

Probab=97.02  E-value=0.035  Score=42.99  Aligned_cols=87  Identities=13%  Similarity=0.135  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy11502         17 VRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRRVFYNKLFLIMIIVIESMT   96 (109)
Q Consensus        17 ~~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~rr~~~~K~il~~ii~~l~l~   96 (109)
                      +...+-....++.+-|...+-.-..+.+..|-+.|..+++.+.++..++..++.-++...++....+.++.+.++++-.+
T Consensus       228 n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r~~~lf~llvlsf~  307 (316)
T KOG3894|consen  228 NELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLRVFLLFFLLVLSFS  307 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence            34456666777888899999999999999999999999999999999999999999999999887777777777777666


Q ss_pred             HHHHHHH
Q psy11502         97 LSVMLYL  103 (109)
Q Consensus        97 i~~viy~  103 (109)
                      +.++-||
T Consensus       308 lLFldwy  314 (316)
T KOG3894|consen  308 LLFLDWY  314 (316)
T ss_pred             HHHHhhc
Confidence            6666554

>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent

Probab=97.02  E-value=0.012  Score=33.53  Aligned_cols=55  Identities=24%  Similarity=0.272  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHH
Q psy11502         19 TGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQ   73 (109)
Q Consensus        19 t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~   73 (109)
                      ..+.+......+.+..+++.++...+..|.+.|.++..+++.+...++.+.+-++
T Consensus         4 ~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~   58 (60)
T cd00193           4 RDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLK   58 (60)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3456777888888999999999999999999999999999999999999987665

>KOG0809|consensus

Probab=95.43  E-value=0.29  Score=37.77  Aligned_cols=70  Identities=11%  Similarity=0.093  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy11502         24 VRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRRVFYNKLFLIMIIVIE   93 (109)
Q Consensus        24 ~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~rr~~~~K~il~~ii~~l   93 (109)
                      ..-.+-..|..++=.+--.-..+|.-.+.|++-+++.+...++.|.+-|....+--..+|-..++.++++
T Consensus       221 ~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~k~~~i~~L~l  290 (305)
T KOG0809|consen  221 TQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNKKMKVILMLTL  290 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCCceEehHHHHH
Confidence            3333344444444444444456999999999999999999999999999998888777765554444433

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=95.17  E-value=0.43  Score=29.82  Aligned_cols=82  Identities=13%  Similarity=0.217  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy11502         14 QALVRTGESIVRSEQAALEAEAIGT---GVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRRVFYNKLFLIMII   90 (109)
Q Consensus        14 ~~l~~t~~~L~~s~~~~~ete~iG~---~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~rr~~~~K~il~~ii   90 (109)
                      +++.+..+.+++.+..+.+.-+--.   +-+++|..+.|.|........      ..|+++=+.|..+-+.-++++.+++
T Consensus         3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~------k~a~~l~r~~~~~~~k~~~i~~~iv   76 (89)
T PF00957_consen    3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFK------KNAKKLKRKMWWRNYKLYIIIIIIV   76 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHH------HHHHHHHHHHHHHHHHHHHhHHhhh
Confidence            4555666666666666666544322   335667777777665544444      4677777788889999988888888


Q ss_pred             HHHHHHHHHHH
Q psy11502         91 VIESMTLSVML  101 (109)
Q Consensus        91 ~~l~l~i~~vi  101 (109)
                      ++++++|++++
T Consensus        77 ~~~~~~i~~~~   87 (89)
T PF00957_consen   77 IIIILIIIIVI   87 (89)
T ss_dssp             HHHHHHHHHTT
T ss_pred             hhhhhHHHHHH
Confidence            88877766654

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional

Probab=95.11  E-value=0.44  Score=29.70  Aligned_cols=57  Identities=18%  Similarity=0.219  Sum_probs=41.0

Q ss_pred             HHHHHhhhHhhhHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11502         50 ALVRARDRLVDTDLHVSRSR-RMIQAIRRRVFYNKLFLIMIIVIESMTLSVMLYLKIF  106 (109)
Q Consensus        50 ~L~~~~~~~~~i~~~l~~a~-~~l~~m~rr~~~~K~il~~ii~~l~l~i~~viy~k~~  106 (109)
                      ......+++|+++.-+.-++ .+.+...++.-+|==|+|++++-+++.++++.+..++
T Consensus        16 d~~~i~~rLD~iEeKVEftn~Ei~Qr~GkkvGRDiGIlYG~viGlli~~i~~~~~~~~   73 (77)
T PRK01026         16 DFKEIQKRLDEIEEKVEFTNAEIFQRIGKKVGRDIGILYGLVIGLLIVLVYIILSPIF   73 (77)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556677777777777655 4566778888889899999988776766666665554

>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea

Probab=95.02  E-value=0.44  Score=29.17  Aligned_cols=56  Identities=9%  Similarity=0.084  Sum_probs=37.9

Q ss_pred             HHHHHhhhHhhhHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11502         50 ALVRARDRLVDTDLHVSRSR-RMIQAIRRRVFYNKLFLIMIIVIESMTLSVMLYLKI  105 (109)
Q Consensus        50 ~L~~~~~~~~~i~~~l~~a~-~~l~~m~rr~~~~K~il~~ii~~l~l~i~~viy~k~  105 (109)
                      +...+.+++++++.-+.-++ .+-+...++.-+|-=|+|++++-+++.+++++..++
T Consensus        13 ~~~~i~~rLd~iEeKvEf~~~Ei~Qr~GkkiGRDiGIlYG~v~Glii~~~~~~l~~~   69 (70)
T PF04210_consen   13 DFNEIMKRLDEIEEKVEFTNAEIAQRAGKKIGRDIGILYGLVIGLIIFIIYIVLSSM   69 (70)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34455666666666666544 456678888889999999998776655555554443

This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane

>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G

Probab=94.02  E-value=0.81  Score=27.98  Aligned_cols=55  Identities=16%  Similarity=0.126  Sum_probs=36.8

Q ss_pred             HHHHhhhHhhhHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11502         51 LVRARDRLVDTDLHVSRSR-RMIQAIRRRVFYNKLFLIMIIVIESMTLSVMLYLKI  105 (109)
Q Consensus        51 L~~~~~~~~~i~~~l~~a~-~~l~~m~rr~~~~K~il~~ii~~l~l~i~~viy~k~  105 (109)
                      .....+++++++.-+.-.+ .+.+...++.-+|-=|+|++++-+++.+++.+.+.+
T Consensus        14 ~~~i~~rLd~iEeKVEf~~~E~~Qr~Gkk~GRDiGIlYG~viGlli~~~~~~l~~~   69 (70)
T TIGR01149        14 FNEVMKRLDEIEEKVEFVNGEVAQRIGKKVGRDIGILYGLVIGLILFLIYILLSSM   69 (70)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3455666666666666544 456677888888888999988776555555554443

coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.

>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C

Probab=93.10  E-value=0.16  Score=29.01  Aligned_cols=32  Identities=25%  Similarity=0.265  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy11502         71 MIQAIRRRVFYNKLFLIMIIVIESMTLSVMLY  102 (109)
Q Consensus        71 ~l~~m~rr~~~~K~il~~ii~~l~l~i~~viy  102 (109)
                      ..+.+-+|..+||..+++.+++++++++.++.
T Consensus         4 ~~~~~~~~f~~nk~a~~gl~il~~~vl~ai~~   35 (56)
T PF12911_consen    4 PWKDAWRRFRRNKLAVIGLIILLILVLLAIFA   35 (56)
T ss_pred             HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            46788899999999999988887666655543

>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]

Probab=92.91  E-value=1.3  Score=27.12  Aligned_cols=54  Identities=15%  Similarity=0.151  Sum_probs=34.0

Q ss_pred             HhhhHhhhHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy11502         54 ARDRLVDTDLHVSRSR-RMIQAIRRRVFYNKLFLIMIIVIESMTLSVMLYLKIFK  107 (109)
Q Consensus        54 ~~~~~~~i~~~l~~a~-~~l~~m~rr~~~~K~il~~ii~~l~l~i~~viy~k~~~  107 (109)
                      +++.+++++.-++=.+ .+-+.+.++.-+|-=|+|++++-|++..++++..+.|+
T Consensus        20 ~~kRLdeieekvef~~~Ev~Qr~GkkiGRDIGILYGlVIGlil~~i~~~l~~~~~   74 (75)
T COG4064          20 IHKRLDEIEEKVEFVNGEVYQRIGKKIGRDIGILYGLVIGLILCMIYILLGVAFR   74 (75)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444444444444333 23567788888898999998887766666666555543

>KOG3065|consensus

Probab=92.88  E-value=1.1  Score=34.23  Aligned_cols=60  Identities=20%  Similarity=0.194  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHH
Q psy11502         15 ALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQA   74 (109)
Q Consensus        15 ~l~~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~   74 (109)
                      .-++.-..|.+...++.....+|.+.=.++..|.+.|.+++++++..+..+..+++-++.
T Consensus       212 ~edeiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~k  271 (273)
T KOG3065|consen  212 AEDEIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKK  271 (273)
T ss_pred             hhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHh
Confidence            334666788888899999999999999999999999999999999999999998876654

>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown

Probab=92.28  E-value=0.58  Score=27.73  Aligned_cols=31  Identities=10%  Similarity=0.112  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy11502         70 RMIQAIRRRVFYNKLFLIMIIVIESMTLSVM  100 (109)
Q Consensus        70 ~~l~~m~rr~~~~K~il~~ii~~l~l~i~~v  100 (109)
                      .....-.+|+.+.++++++++++++++.+++
T Consensus        26 ~~~~k~qk~~~~~~~i~~~~~i~~l~v~~~~   56 (59)
T PF09889_consen   26 EEYRKRQKRMRKTQYIFFGIFILFLAVWIFM   56 (59)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555667777788887777664444433

They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.

>KOG0859|consensus

Probab=90.54  E-value=1.3  Score=32.50  Aligned_cols=63  Identities=11%  Similarity=0.123  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHHHHHhh
Q psy11502         20 GESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRRVFYN   82 (109)
Q Consensus        20 ~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~rr~~~~   82 (109)
                      .+.|.+.+..+.|..++-.+=.+..-+-.|.|+=.-++..+..++-..=++.-+.+.|.++-.
T Consensus       124 id~lskvkaqv~evk~vM~eNIekvldRGekiELLVdKTenl~~~s~~fr~q~r~~~r~mw~~  186 (217)
T KOG0859|consen  124 ISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSKSFDFRTQGRKLRRKMWFQ  186 (217)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEeeechhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence            577888888888888888888888888888888877777777777666666666666665433

>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length

Probab=89.65  E-value=0.48  Score=35.03  Aligned_cols=30  Identities=23%  Similarity=0.392  Sum_probs=21.1

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy11502         77 RRVFYNKLFLIMIIVIESMTLSVMLYLKIFK  107 (109)
Q Consensus        77 rr~~~~K~il~~ii~~l~l~i~~viy~k~~~  107 (109)
                      +|-..|+++=++|++++ |+|++|.|+.||.
T Consensus         8 KrRK~N~iLNiaI~IV~-lLIiiva~~lf~~   37 (217)
T PF07423_consen    8 KRRKTNKILNIAIGIVS-LLIIIVAYQLFFG   37 (217)
T ss_pred             HhhhhhhhHHHHHHHHH-HHHHHHhhhheec
Confidence            45567777767776666 6677788888873

The function of this family is unknown.

>PRK10132 hypothetical protein; Provisional

Probab=89.47  E-value=4.5  Score=26.70  Aligned_cols=59  Identities=8%  Similarity=0.023  Sum_probs=27.5

Q ss_pred             HHHHHh-hHHHHHHhhhHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy11502         42 SELGVQ-REALVRARDRLVDTDLHVSRSRRMIQAIRRRVFYNKLFLIMIIVIESMTLSVM  100 (109)
Q Consensus        42 ~~L~~Q-re~L~~~~~~~~~i~~~l~~a~~~l~~m~rr~~~~K~il~~ii~~l~l~i~~v  100 (109)
                      .+|+.+ ...|..+++.+.+.......++........-+-.|-|--++|...+.++++++
T Consensus        44 ~~lR~r~~~~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~Pw~svgiaagvG~llG~L  103 (108)
T PRK10132         44 EAARRKAQALLKETRARMHGRTRVQQAARDAVGCADTFVRERPWCSVGTAAAVGIFIGAL  103 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence            444433 23455555566655554333443333333333445555566555544444433

>PF12669 P12: Virus attachment protein p12 family

Probab=88.83  E-value=0.32  Score=28.63  Aligned_cols=12  Identities=17%  Similarity=0.229  Sum_probs=5.9

Q ss_pred             HHHHHHHHHhcc
Q psy11502         97 LSVMLYLKIFKK  108 (109)
Q Consensus        97 i~~viy~k~~~~  108 (109)
                      ++++++++|+|+
T Consensus        12 ~~~v~~r~~~k~   23 (58)
T PF12669_consen   12 VAYVAIRKFIKD   23 (58)
T ss_pred             HHHHHHHHHHHH
Confidence            334455565543

>PHA03240 envelope glycoprotein M; Provisional

Probab=87.58  E-value=0.64  Score=34.59  Aligned_cols=22  Identities=18%  Similarity=0.386  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Q psy11502         85 FLIMIIVIESMTLSVMLYLKIF  106 (109)
Q Consensus        85 il~~ii~~l~l~i~~viy~k~~  106 (109)
                      ..|+++++++++|++++++||=
T Consensus       213 ~~WIiilIIiIiIIIL~cfKiP  234 (258)
T PHA03240        213 IAWIFIAIIIIIVIILFFFKIP  234 (258)
T ss_pred             HhHHHHHHHHHHHHHHHHHhcc
Confidence            4566666666667777777763

>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase

Probab=87.53  E-value=0.51  Score=26.02  Aligned_cols=18  Identities=11%  Similarity=0.278  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHHHhccC
Q psy11502         92 IESMTLSVMLYLKIFKKR  109 (109)
Q Consensus        92 ~l~l~i~~viy~k~~~~~  109 (109)
                      +-+.+++.++|.||..+|
T Consensus        20 v~i~iva~~iYRKw~aRk   37 (43)
T PF08114_consen   20 VGIGIVALFIYRKWQARK   37 (43)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            444566777999997543

Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=87.24  E-value=1.1  Score=30.34  Aligned_cols=21  Identities=5%  Similarity=-0.007  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q psy11502         85 FLIMIIVIESMTLSVMLYLKI  105 (109)
Q Consensus        85 il~~ii~~l~l~i~~viy~k~  105 (109)
                      |.+|+++-++++|++++|+-.
T Consensus        69 Ii~gv~aGvIg~Illi~y~ir   89 (122)
T PF01102_consen   69 IIFGVMAGVIGIILLISYCIR   89 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHH
Confidence            333444433344444444433

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109

Probab=87.13  E-value=8.7  Score=27.24  Aligned_cols=53  Identities=13%  Similarity=0.204  Sum_probs=34.3

Q ss_pred             HhhhHhhhHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHh
Q psy11502         54 ARDRLVDTDLHVSRSRRMIQAIRRRVFYN-KLFLIMIIVIESMTLSVMLYLKIF  106 (109)
Q Consensus        54 ~~~~~~~i~~~l~~a~~~l~~m~rr~~~~-K~il~~ii~~l~l~i~~viy~k~~  106 (109)
                      ....++....++..-...-..|..++... +.++|++++++++-.+++.|+.|.
T Consensus        62 l~~~l~~~~~el~~le~~k~~id~~A~~~~~~~~w~gl~~l~~q~~~l~rLTf~  115 (180)
T PF04678_consen   62 LRKRLEELRQELAPLEKIKQEIDEKAEKRARRLLWGGLALLVVQFGILARLTFW  115 (180)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34455566666666555556666665333 677788888887777777777664

>KOG0862|consensus

Probab=87.08  E-value=10  Score=28.06  Aligned_cols=67  Identities=10%  Similarity=0.135  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHHHHHhhHHH
Q psy11502         19 TGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRRVFYNKLF   85 (109)
Q Consensus        19 t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~rr~~~~K~i   85 (109)
                      +...+..-.....++..+-..-++++-.-.|.|........+...+-..-.+..+.|.++..-+++-
T Consensus       132 ~~~n~~~~n~el~~v~~im~~niedvl~rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~~~a  198 (216)
T KOG0862|consen  132 SQRNLLKLNQELQDVQRIMVENLEDVLQRGEVLNALSSMASELSSESRKYPKTAKGINRKSLIRKYA  198 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHHHHH
Confidence            3566677777777888888888899888888888877777776666656667777888887777665

>PTZ00382 Variant-specific surface protein (VSP); Provisional

Probab=86.22  E-value=0.16  Score=32.88  Aligned_cols=20  Identities=0%  Similarity=0.174  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHHHHHhccC
Q psy11502         90 IVIESMTLSVMLYLKIFKKR  109 (109)
Q Consensus        90 i~~l~l~i~~viy~k~~~~~  109 (109)
                      ++++.+++++++|+.++|+|
T Consensus        76 ~~~v~~lv~~l~w~f~~r~k   95 (96)
T PTZ00382         76 VAVVGGLVGFLCWWFVCRGK   95 (96)
T ss_pred             hhHHHHHHHHHhheeEEeec
Confidence            33333444555566555654

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=85.94  E-value=14  Score=28.73  Aligned_cols=101  Identities=15%  Similarity=0.187  Sum_probs=62.7

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHHHHHh----
Q psy11502          6 RETLRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRRVFY----   81 (109)
Q Consensus         6 R~~ll~~~~~l~~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~rr~~~----   81 (109)
                      |.++-...+.++.+...|...+..+.+.++-=...-.++..--.........+..+..-+.+|.+++...+.-..+    
T Consensus       220 ~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~  299 (344)
T PF12777_consen  220 RQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQ  299 (344)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHH
Confidence            5566666677777778888777777776655444444444444445566666788888899999999886654211    


Q ss_pred             ---hHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11502         82 ---NKLFLIMIIVIESMTLSVMLYLKIF  106 (109)
Q Consensus        82 ---~K~il~~ii~~l~l~i~~viy~k~~  106 (109)
                         -+--+..+++-.+++-+++.|+..|
T Consensus       300 ~~~l~~~~~~l~GD~llaaa~isY~G~f  327 (344)
T PF12777_consen  300 IEELEEQLKNLVGDSLLAAAFISYLGPF  327 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHcCCC
Confidence               1111233444445566667776544

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor

Probab=85.71  E-value=0.92  Score=32.80  Aligned_cols=23  Identities=17%  Similarity=0.267  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Q psy11502         85 FLIMIIVIESMTLSVMLYLKIFK  107 (109)
Q Consensus        85 il~~ii~~l~l~i~~viy~k~~~  107 (109)
                      |+.||++.|.+.-++++.|||.|
T Consensus       163 FiGGIVL~LGv~aI~ff~~KF~k  185 (186)
T PF05283_consen  163 FIGGIVLTLGVLAIIFFLYKFCK  185 (186)
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcc
Confidence            45566666666556667778876

Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.

>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=85.59  E-value=2  Score=23.22  Aligned_cols=23  Identities=17%  Similarity=0.366  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcc
Q psy11502         86 LIMIIVIESMTLSVMLYLKIFKK  108 (109)
Q Consensus        86 l~~ii~~l~l~i~~viy~k~~~~  108 (109)
                      ..++++.++++++.++||-+-.|
T Consensus         9 Iv~V~vg~~iiii~~~~YaCcyk   31 (38)
T PF02439_consen    9 IVAVVVGMAIIIICMFYYACCYK   31 (38)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHc
Confidence            34444445555555666555444

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

>PHA02844 putative transmembrane protein; Provisional

Probab=84.82  E-value=1.7  Score=26.87  Aligned_cols=22  Identities=32%  Similarity=0.492  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcc
Q psy11502         87 IMIIVIESMTLSVMLYLKIFKK  108 (109)
Q Consensus        87 ~~ii~~l~l~i~~viy~k~~~~  108 (109)
                      ++++.++++++...+|+|..++
T Consensus        53 i~i~~v~~~~~~~flYLK~~~r   74 (75)
T PHA02844         53 LTIIFVVFATFLTFLYLKAVPR   74 (75)
T ss_pred             HHHHHHHHHHHHHHHHHheecC
Confidence            4455556666777789888765

>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]

Probab=84.67  E-value=0.53  Score=25.81  Aligned_cols=14  Identities=21%  Similarity=0.439  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHhccC
Q psy11502         96 TLSVMLYLKIFKKR  109 (109)
Q Consensus        96 ~i~~viy~k~~~~~  109 (109)
                      ++++++|++++|+|
T Consensus        27 vl~~~l~~~~rR~k   40 (40)
T PF08693_consen   27 VLGAFLFFWYRRKK   40 (40)
T ss_pred             HHHHHhheEEeccC
Confidence            34445555566654

This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].

>PHA02650 hypothetical protein; Provisional

Probab=84.36  E-value=2.3  Score=26.64  Aligned_cols=21  Identities=14%  Similarity=0.297  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhcc
Q psy11502         88 MIIVIESMTLSVMLYLKIFKK  108 (109)
Q Consensus        88 ~ii~~l~l~i~~viy~k~~~~  108 (109)
                      .+++++++++.+.+|+|..++
T Consensus        55 ~i~~v~i~~l~~flYLK~~~r   75 (81)
T PHA02650         55 LIFSLIIVALFSFFVFKGYTR   75 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc
Confidence            344455566677789988765

>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses

Probab=84.26  E-value=0.68  Score=38.07  Aligned_cols=41  Identities=15%  Similarity=0.362  Sum_probs=23.7

Q ss_pred             HHHHHhhhHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy11502         50 ALVRARDRLVDTDLHVSRSRRMIQAIRRRVFYNKLFLIMII   90 (109)
Q Consensus        50 ~L~~~~~~~~~i~~~l~~a~~~l~~m~rr~~~~K~il~~ii   90 (109)
                      .|..+...+++..+.+++|+++|+.+......+..+...++
T Consensus       439 eL~~vn~sL~~A~~~L~~Sn~iL~~v~~~~~~~~~iI~liV  479 (490)
T PF00523_consen  439 ELGQVNNSLNNAKDLLDKSNQILDSVNPGISSNSIIIILIV  479 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTTT--------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence            46778888889999999999999999987777766554443

This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....

>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown

Probab=83.66  E-value=5.6  Score=23.52  Aligned_cols=32  Identities=19%  Similarity=0.263  Sum_probs=22.5

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11502         75 IRRRVFYNKLFLIMIIVIESMTLSVMLYLKIF  106 (109)
Q Consensus        75 m~rr~~~~K~il~~ii~~l~l~i~~viy~k~~  106 (109)
                      ..++.-+.+-..++..+++++++++++|..|+
T Consensus        28 ~~k~qk~~~~~~~i~~~~~i~~l~v~~~~~~~   59 (59)
T PF09889_consen   28 YRKRQKRMRKTQYIFFGIFILFLAVWIFMTFF   59 (59)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            44455556667788888887777777877764

They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.

>PTZ00464 SNF-7-like protein; Provisional

Probab=83.61  E-value=15  Score=26.94  Aligned_cols=73  Identities=4%  Similarity=0.005  Sum_probs=45.4

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHH
Q psy11502          4 IHRETLRETNQALVRTGESIVRSEQA--ALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRR   77 (109)
Q Consensus         4 ~~R~~ll~~~~~l~~t~~~L~~s~~~--~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~r   77 (109)
                      .+..++......+++....|+.++-.  +.++-..|..+|..++.+= .+..+.+-++++.+.+..++.+=..+++
T Consensus        75 ~ql~~l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i-~id~Vd~l~Dei~E~~e~~~EI~e~Ls~  149 (211)
T PTZ00464         75 NQQDMMMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKL-NVDKVEDLQDELADLYEDTQEIQEIMGR  149 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            44555555566666666666665543  3356667777777777765 5667777777777776666655544443

>PF10151 DUF2359: Uncharacterised conserved protein (DUF2359); InterPro: IPR019308 This is a 450 amino acid region of a family of proteins conserved from insects to humans

Probab=82.95  E-value=22  Score=29.23  Aligned_cols=45  Identities=7%  Similarity=0.056  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11502         62 DLHVSRSRRMIQAIRRRVFYNKLFLIMIIVIESMTLSVMLYLKIF  106 (109)
Q Consensus        62 ~~~l~~a~~~l~~m~rr~~~~K~il~~ii~~l~l~i~~viy~k~~  106 (109)
                      +..+..+++..+.+..|+-..+|.-...+++++++++.+++|-+.
T Consensus       242 ~~~lk~~dk~Ck~il~K~~~~~c~w~~l~llllvliaG~l~yDv~  286 (469)
T PF10151_consen  242 DESLKECDKACKVILGKMSGSSCPWTRLLLLLLVLIAGFLAYDVR  286 (469)
T ss_pred             hHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHhhh
Confidence            346677889999999998877766555555555666677777653

The function is not known.

>PF14283 DUF4366: Domain of unknown function (DUF4366)

Probab=81.22  E-value=0.24  Score=36.60  Aligned_cols=15  Identities=20%  Similarity=0.483  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHhccC
Q psy11502         95 MTLSVMLYLKIFKKR  109 (109)
Q Consensus        95 l~i~~viy~k~~~~~  109 (109)
                      ++.++..||||.|+|
T Consensus       172 ~gGGa~yYfK~~K~K  186 (218)
T PF14283_consen  172 IGGGAYYYFKFYKPK  186 (218)
T ss_pred             hhcceEEEEEEeccc
Confidence            344555888888876

>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C

Probab=80.76  E-value=8.9  Score=22.31  Aligned_cols=62  Identities=15%  Similarity=0.097  Sum_probs=50.2

Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHH
Q psy11502          7 ETLRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRS   68 (109)
Q Consensus         7 ~~ll~~~~~l~~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a   68 (109)
                      +.|++.++.++++...++++..++.++-+-=..=-+.|..=+..+..+...+...+.-+..-
T Consensus         1 d~l~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I   62 (66)
T PF12352_consen    1 DRLLRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRI   62 (66)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            46788889999999999999999988865555556778888899999999988888877653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	109
1gl2_C	65	Crystal Structure Of An Endosomal Snare Core Comple		4e-05

>pdb|1GL2|C Chain C, Crystal Structure Of An Endosomal Snare Core Complex Length = 65

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 16 LVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTD 62
          + R  +SI RS + A E + IGT +I ELG QR+ L R + RLV+T+
Sbjct: 4  MNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTN 50

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	109
2nps_C	81	Vesicle transport through interaction with T- snar	2e-15
1gl2_C	65	VTI1B, vesicle transport V-snare protein VTI1-like	4e-13

>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Length = 81

 Score = 64.4 bits (157), Expect = 2e-15
 Identities = 25/79 (31%), Positives = 43/79 (54%)

Query: 5  HRETLRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLH 64
           R  L +  + L R+   +    Q A+E E IG  ++  L   RE + RAR+RL +TD +
Sbjct: 3  MRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDAN 62

Query: 65 VSRSRRMIQAIRRRVFYNK 83
          + +S R++  + RR+  N+
Sbjct: 63 LGKSSRILTGMLRRIIQNR 81

>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Length = 65

 Score = 58.2 bits (141), Expect = 4e-13
 Identities = 26/62 (41%), Positives = 44/62 (70%)

Query: 16 LVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAI 75
          + R  +SI RS + A E + IGT +I ELG QR+ L R + RLV+T+ ++S+SR++++++
Sbjct: 4  MNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSM 63

Query: 76 RR 77
           R
Sbjct: 64 SR 65

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	109
2nps_C	81	Vesicle transport through interaction with T- snar	99.93
1gl2_C	65	VTI1B, vesicle transport V-snare protein VTI1-like	99.81
1n7s_C	79	SNAP-25A; neuronal snare protein complex, four hel	99.69
1nhl_A	54	Synaptosomal-associated protein 23; snare, coiled-	99.49
3b5n_C	70	Protein transport protein SEC9; snare complex, syn	99.23
1l4a_C	83	S-SNAP25 fusion protein; snare, snare complex, mem	99.21
3hd7_B	109	Syntaxin-1A; membrane protein, coiled-coil, 4-heli	98.41
3hd7_A	91	Vesicle-associated membrane protein 2; membrane pr	98.2
2kog_A	119	Vesicle-associated membrane protein 2; synaptobrev	97.3
3hd7_A	91	Vesicle-associated membrane protein 2; membrane pr	97.27
3b5n_D	64	Protein transport protein SEC9; snare complex, syn	96.76
2nps_D	82	Syntaxin-6; vesicle fusion, snare complex, early e	96.65
1sfc_D	87	Protein (SNAP-25B), protein (synaptobrevin 2); mem	96.62
1gl2_D	65	Syntaxin 8, vesicle transport V-snare protein VTI1	96.62
1n7s_D	66	SNAP-25A; neuronal snare protein complex, four hel	96.42
1l4a_D	87	S-SNAP25 fusion protein; snare, snare complex, mem	96.16
1jth_B	77	Syntaxin 1A; coiled-coil, polar layer, endocytosis	93.27
2nps_B	71	Syntaxin 13, vesicle-associated membrane protein 4	90.18
1gl2_B	65	Syntaxin 7; membrane protein, membrane fusion prot	89.94
3b5n_B	69	Protein SSO1; snare complex, syntaxin, synaptobrev	89.22
1n7s_B	68	Syntaxin 1A; neuronal snare protein complex, four	88.01
2kog_A	119	Vesicle-associated membrane protein 2; synaptobrev	86.83
3ljc_A	252	ATP-dependent protease LA; LON N-domain, allosteri	83.72
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	82.8
1sfc_B	83	Protein (syntaxin 1A), protein (synaptobrevin 2);	82.45
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	80.4
1sfc_A	96	VAMP 2, protein (synaptobrevin 2); membrane fusion	80.2

>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}

Probab=99.93  E-value=4.3e-26  Score=143.28  Aligned_cols=80  Identities=31%  Similarity=0.514  Sum_probs=77.1

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHHHHHhhH
Q psy11502          4 IHRETLRETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRRVFYNK   83 (109)
Q Consensus         4 ~~R~~ll~~~~~l~~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~rr~~~~K   83 (109)
                      +||++||++++++++++++|.+|++++.|||++|.+|+++|+.|||+|.+++++++++|+++++|+++|+.|.||+++||
T Consensus         2 ~qR~~Ll~~t~~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr~~~nK   81 (81)
T 2nps_C            2 SMRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRIIQNR   81 (81)
T ss_dssp             TTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred             cHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999987

>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1

Probab=99.81  E-value=3.9e-20  Score=111.64  Aligned_cols=64  Identities=41%  Similarity=0.662  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHH
Q psy11502         14 QALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRR   77 (109)
Q Consensus        14 ~~l~~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~r   77 (109)
                      ++|++++++|.+|.+++.|||++|.+|+.+|++|||+|.+++++++++|+++++|+++|+.|.|
T Consensus         2 ~rL~~t~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m~R   65 (65)
T 1gl2_C            2 SHMNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSR   65 (65)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhhcC
Confidence            5789999999999999999999999999999999999999999999999999999999999976

>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A

Probab=99.69  E-value=2.8e-16  Score=97.94  Aligned_cols=68  Identities=19%  Similarity=0.219  Sum_probs=64.8

Q ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHH
Q psy11502         10 RETNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRR   77 (109)
Q Consensus        10 l~~~~~l~~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~r   77 (109)
                      ..+++.++++++++.+|.+++.||+++|.+|+.+|+.|||+|.++++.++++++++++|.++|+.|.+
T Consensus        12 ~~~~~~~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m~k   79 (79)
T 1n7s_C           12 RRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLGK   79 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhhcC
Confidence            34778899999999999999999999999999999999999999999999999999999999999963

>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1

Probab=99.49  E-value=8.4e-14  Score=80.88  Aligned_cols=52  Identities=21%  Similarity=0.302  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHH
Q psy11502         24 VRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAI   75 (109)
Q Consensus        24 ~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m   75 (109)
                      .+|.+++.||+++|.+++.+|+.|||+|.++++.++++++++++|.++|++|
T Consensus         3 ~~~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~~m   54 (54)
T 1nhl_A            3 RRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLTEL   54 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHhcC
Confidence            6899999999999999999999999999999999999999999999999864

>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1

Probab=99.23  E-value=1.1e-10  Score=70.93  Aligned_cols=62  Identities=18%  Similarity=0.184  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHH
Q psy11502         16 LVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRR   77 (109)
Q Consensus        16 l~~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~r   77 (109)
                      -+++.++-.++.+++.|++++|..++..|+.|+|+|.+++..+++++.++..|.+.++.+..
T Consensus         7 ~~esl~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~   68 (70)
T 3b5n_C            7 KQSSVASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKK   68 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            46778899999999999999999999999999999999999999999999999999998864

>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1

Probab=99.21  E-value=3.1e-11  Score=75.65  Aligned_cols=65  Identities=20%  Similarity=0.197  Sum_probs=59.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHH
Q psy11502         12 TNQALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIR   76 (109)
Q Consensus        12 ~~~~l~~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~   76 (109)
                      .....+.+.++..++.+++.|++++|..++..|+.|+|+|.++...+++|+.++.+|.+.|+.|.
T Consensus        18 ~~~~~~esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~~L~   82 (83)
T 1l4a_C           18 CNQVTDDSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLEGME   82 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTTC--
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            44556789999999999999999999999999999999999999999999999999999887764

>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B

Probab=98.41  E-value=1.8e-05  Score=51.34  Aligned_cols=78  Identities=15%  Similarity=0.116  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHH
Q psy11502         16 LVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAI---RRRVFYNKLFLIMIIVI   92 (109)
Q Consensus        16 l~~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m---~rr~~~~K~il~~ii~~   92 (109)
                      +.+-.+.+.+-++.+.|..++=.+...-..+|.|.+.++..+++++..++..|.+-++.-   .++..+.+|++.+++++
T Consensus        16 i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~i~l~~~~i   95 (109)
T 3hd7_B           16 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIMIIICCVI   95 (109)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceehHHHHHH
Confidence            344456677777788888888888888999999999999999999999999999888654   33344444444443333


Q ss_pred             H
Q psy11502         93 E   93 (109)
Q Consensus        93 l   93 (109)
                      +
T Consensus        96 ~   96 (109)
T 3hd7_B           96 L   96 (109)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A

Probab=98.20  E-value=9.7e-05  Score=46.51  Aligned_cols=84  Identities=11%  Similarity=0.170  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy11502         20 GESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRRVFYNKLFLIMIIVIESMTLSV   99 (109)
Q Consensus        20 ~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~rr~~~~K~il~~ii~~l~l~i~~   99 (109)
                      ++.+...+.-++|+.++-.+-.+.+-+..|.|....++.++..+.-..=.+.-+.+.|+++-..+=+++++++.++++++
T Consensus         4 ~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~~iii~~iv~~il~   83 (91)
T 3hd7_A            4 MRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILI   83 (91)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46677778888888888888888899999999999999888888777666666666677655533333333333333333


Q ss_pred             HHHH
Q psy11502        100 MLYL  103 (109)
Q Consensus       100 viy~  103 (109)
                      +++.
T Consensus        84 ii~~   87 (91)
T 3hd7_A           84 IIIV   87 (91)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            3333

>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}

Probab=97.30  E-value=7.5e-05  Score=49.28  Aligned_cols=85  Identities=11%  Similarity=0.189  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy11502         19 TGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRRVFYNKLFLIMIIVIESMTLS   98 (109)
Q Consensus        19 t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~rr~~~~K~il~~ii~~l~l~i~   98 (109)
                      +.+.|...+.-++|+.++-.+-.+.+-+..|.|....++.++....-..=.+.-+.+.|+++-.++=+++++++++++++
T Consensus        31 ~~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn~K~~iii~~iv~iii  110 (119)
T 2kog_A           31 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIIL  110 (119)
T ss_dssp             SCSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677788888888888888888999999999999988888877766666666677777776666655555555444444


Q ss_pred             HHHHH
Q psy11502         99 VMLYL  103 (109)
Q Consensus        99 ~viy~  103 (109)
                      ++|+.
T Consensus       111 ~iIi~  115 (119)
T 2kog_A          111 IIIIV  115 (119)
T ss_dssp             HHHHH
T ss_pred             HHhhh
Confidence            44443

>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A

Probab=97.27  E-value=0.0089  Score=37.34  Aligned_cols=85  Identities=13%  Similarity=0.071  Sum_probs=62.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy11502         12 TNQALVRTGESIVRSEQAALEAEAIGT---GVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRRVFYNKLFLIM   88 (109)
Q Consensus        12 ~~~~l~~t~~~L~~s~~~~~ete~iG~---~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~rr~~~~K~il~~   88 (109)
                      +++++.+..+.+++.+.++.+..+--.   +-++.|.+..|.|........      ..|+++=+.|-.+-++-++++.+
T Consensus         3 ~~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~------~~A~~l~rkmwwkn~K~~iii~~   76 (91)
T 3hd7_A            3 HMRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFE------TSAAKLKRKYWWKNLKMMIILGV   76 (91)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            567888899999999999888866432   345677777777766544443      56777788899999999888888


Q ss_pred             HHHHHHHHHHHHHH
Q psy11502         89 IIVIESMTLSVMLY  102 (109)
Q Consensus        89 ii~~l~l~i~~viy  102 (109)
                      ++++++++|++.++
T Consensus        77 iv~~il~ii~~~~~   90 (91)
T 3hd7_A           77 ICAIILIIIIVYFS   90 (91)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHh
Confidence            77777666665443

>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}

Probab=96.76  E-value=0.014  Score=34.19  Aligned_cols=58  Identities=12%  Similarity=0.159  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHH
Q psy11502         17 VRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQA   74 (109)
Q Consensus        17 ~~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~   74 (109)
                      ++.-+.|+.-..++.-...+|..+-+++..|.++|.++..+++.++..+..+++-|..
T Consensus         6 ~e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~   63 (64)
T 3b5n_D            6 LEIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAG   63 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4556777888888888899999999999999999999999999999999998876653

>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}

Probab=96.65  E-value=0.013  Score=35.82  Aligned_cols=66  Identities=11%  Similarity=0.010  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHHHH
Q psy11502         14 QALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRRV   79 (109)
Q Consensus        14 ~~l~~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~rr~   79 (109)
                      +.+.+.-+.|+.-...+....++|.++=.+|..|.+-|......++.+++-+..+.+-++.+.++.
T Consensus        12 ~~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~   77 (82)
T 2nps_D           12 NMGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMT   77 (82)
T ss_dssp             ------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            444566677888888888999999999999999999999999999999999999999999888764

>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1

Probab=96.62  E-value=0.02  Score=35.39  Aligned_cols=64  Identities=6%  Similarity=0.052  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHH
Q psy11502         14 QALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRR   77 (109)
Q Consensus        14 ~~l~~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~r   77 (109)
                      ...++.-+.|+.-...+....++|.++=.+|..|.+.|.++..+++.++..+..+++-++.+.+
T Consensus        22 ~~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll~   85 (87)
T 1sfc_D           22 ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLG   85 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence            3445677888888888999999999999999999999999999999999999999887776543

>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1

Probab=96.62  E-value=0.013  Score=34.09  Aligned_cols=61  Identities=13%  Similarity=0.168  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHH
Q psy11502         16 LVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIR   76 (109)
Q Consensus        16 l~~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~   76 (109)
                      +.+.-+.|+.-...+....++|.++-.++..|.+-|.+...+++.+++.+..+.+-++.+.
T Consensus         4 ~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l~   64 (65)
T 1gl2_D            4 MQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLVD   64 (65)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4455667777788888889999999999999999999999999999999999887766553

>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B

Probab=96.42  E-value=0.048  Score=31.72  Aligned_cols=59  Identities=7%  Similarity=0.094  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHH
Q psy11502         17 VRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAI   75 (109)
Q Consensus        17 ~~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m   75 (109)
                      ++.-+.|+.-...+....++|..+-.+|..|.+.|.++..+++.++..+..+.+-++.+
T Consensus         6 ~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~l   64 (66)
T 1n7s_D            6 NEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM   64 (66)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            34556677777788888999999999999999999999999999999999988766653

>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1

Probab=96.16  E-value=0.026  Score=34.97  Aligned_cols=62  Identities=6%  Similarity=0.094  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHH
Q psy11502         15 ALVRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIR   76 (109)
Q Consensus        15 ~l~~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~   76 (109)
                      +-++.-+.|+.-...+....++|.++-++|..|.+.|.++..+++.++..+..+++-++.+.
T Consensus        24 ~e~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kll   85 (87)
T 1l4a_D           24 REDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKLL   85 (87)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHCC
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34556777888888888999999999999999999999999999999999999887776543

>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B

Probab=93.27  E-value=0.73  Score=27.35  Aligned_cols=61  Identities=13%  Similarity=0.033  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHHH
Q psy11502         18 RTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRR   78 (109)
Q Consensus        18 ~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~rr   78 (109)
                      .-.+.+.+-.+.+.|..++=.+...-...|.|.+.++..++.++..++..|..-|..-.+.
T Consensus         7 eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~   67 (77)
T 1jth_B            7 TRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY   67 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344566666777777888778777888999999999999999999999999888775553

>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}

Probab=90.18  E-value=1.7  Score=25.28  Aligned_cols=57  Identities=16%  Similarity=0.181  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHHH
Q psy11502         22 SIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRR   78 (109)
Q Consensus        22 ~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~rr   78 (109)
                      .+.+-.+.+.|..++=.+...-...|.|.|.++..++..+..++..|..-|..-.+.
T Consensus         7 ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~   63 (71)
T 2nps_B            7 AIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYY   63 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455556667777777777777778999999999999999999999999888765543

>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1

Probab=89.94  E-value=1.7  Score=24.90  Aligned_cols=53  Identities=13%  Similarity=0.182  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHH
Q psy11502         22 SIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQA   74 (109)
Q Consensus        22 ~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~   74 (109)
                      .+.+-.+.+.|..++=.+...-...|.|.+.++..++..+..++..|..-|+.
T Consensus        10 ~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~k   62 (65)
T 1gl2_B           10 SIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSR   62 (65)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666777777777777777899999999999999999999999987753

>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1

Probab=89.22  E-value=2.1  Score=24.82  Aligned_cols=59  Identities=12%  Similarity=0.082  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHH
Q psy11502         18 RTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIR   76 (109)
Q Consensus        18 ~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~   76 (109)
                      .-.+.+.+-.+.+.|..++=.+...-...|.|.+.++..++..+..++..|..-|+.=.
T Consensus         7 eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~   65 (69)
T 3b5n_B            7 ARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAV   65 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455666677777888887777777889999999999999999999999998876543

>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B

Probab=88.01  E-value=2.5  Score=24.33  Aligned_cols=58  Identities=14%  Similarity=0.034  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHH
Q psy11502         17 VRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQA   74 (109)
Q Consensus        17 ~~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~   74 (109)
                      ..-.+.+.+-.+.+.|..++=.+...-...|.+.+.++..++..+..++..|..-|+.
T Consensus         8 ~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~k   65 (68)
T 1n7s_B            8 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK   65 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344556666777777788877777777899999999999999999999999987754

>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}

Probab=86.83  E-value=1.2  Score=28.90  Aligned_cols=83  Identities=14%  Similarity=0.084  Sum_probs=55.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy11502         13 NQALVRTGESIVRSEQAALEAEAIGT---GVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRRVFYNKLFLIMI   89 (109)
Q Consensus        13 ~~~l~~t~~~L~~s~~~~~ete~iG~---~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~rr~~~~K~il~~i   89 (109)
                      .+++.+..+.+++.+.++.+..+--.   +-+++|.+..|.|.....      .--..|+++=+.|-.+-++-++++.++
T Consensus        32 ~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~------~F~k~A~kl~rkmwwkn~K~~iii~~i  105 (119)
T 2kog_A           32 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGAS------QFETSAAKLKRKYWWKNLKMMIILGVI  105 (119)
T ss_dssp             CSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSH------HHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788888888898888888866321   112455555555544333      333557777888888888888888777


Q ss_pred             HHHHHHHHHHHH
Q psy11502         90 IVIESMTLSVML  101 (109)
Q Consensus        90 i~~l~l~i~~vi  101 (109)
                      +++++++|++.+
T Consensus       106 v~iii~iIi~~~  117 (119)
T 2kog_A          106 CAIILIIIIVYF  117 (119)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhe
Confidence            777766665544

>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}

Probab=83.72  E-value=7.4  Score=27.57  Aligned_cols=61  Identities=10%  Similarity=0.080  Sum_probs=48.6

Q ss_pred             CchHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hHHHHHHhhhHhhh
Q psy11502          1 MEKIHRETLRETN---QALVRTGESIVRSEQAALEAEAIGTGVISELGVQ------REALVRARDRLVDT   61 (109)
Q Consensus         1 ~~~~~R~~ll~~~---~~l~~t~~~L~~s~~~~~ete~iG~~il~~L~~Q------re~L~~~~~~~~~i   61 (109)
                      ++.++++++|...   ++++.-...|.+-..++.=..+|...+=+++..|      ||||+-+++.+++-
T Consensus       182 l~~~eKQ~LLe~~d~~~Rl~~l~~lL~~e~e~~~l~~~I~~~v~~~~~k~Qrey~LrEQlk~IqkELGe~  251 (252)
T 3ljc_A          182 LKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEM  251 (252)
T ss_dssp             CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             CCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            3678899999865   5777777888888888877888888888888866      67999998888753

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=82.80  E-value=2  Score=23.18  Aligned_cols=9  Identities=0%  Similarity=0.124  Sum_probs=3.6

Q ss_pred             HHHHHHHhc
Q psy11502         99 VMLYLKIFK  107 (109)
Q Consensus        99 ~viy~k~~~  107 (109)
                      +.+|+.|.+
T Consensus        28 ~~~~~~~RR   36 (44)
T 2l2t_A           28 LTFAVYVRR   36 (44)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHhhh
Confidence            333444443

>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B

Probab=82.45  E-value=5.9  Score=23.66  Aligned_cols=60  Identities=13%  Similarity=0.018  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHH
Q psy11502         17 VRTGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIR   76 (109)
Q Consensus        17 ~~t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~   76 (109)
                      ..-...+.+-.+.+.|..++=.+...-...|.|.+.++..++..+..++..|..-|..-.
T Consensus        17 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~   76 (83)
T 1sfc_B           17 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV   76 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455666677777777777777777789999999999999999999999998776543

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=80.40  E-value=1.4  Score=23.82  Aligned_cols=9  Identities=11%  Similarity=-0.005  Sum_probs=3.6

Q ss_pred             HHHHHHHhc
Q psy11502         99 VMLYLKIFK  107 (109)
Q Consensus        99 ~viy~k~~~  107 (109)
                      +.+|+.+.+
T Consensus        29 ~~~~~~~RR   37 (44)
T 2ks1_B           29 LGIGLFMRR   37 (44)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHhhh
Confidence            333444443

>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1

Probab=80.20  E-value=8.2  Score=23.85  Aligned_cols=64  Identities=11%  Similarity=0.135  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHhhhHHHHHHHHHHHHHHHHHHHhh
Q psy11502         19 TGESIVRSEQAALEAEAIGTGVISELGVQREALVRARDRLVDTDLHVSRSRRMIQAIRRRVFYN   82 (109)
Q Consensus        19 t~~~L~~s~~~~~ete~iG~~il~~L~~Qre~L~~~~~~~~~i~~~l~~a~~~l~~m~rr~~~~   82 (109)
                      +.+.|...+.-++|+.++-.+-+..+-+..|.|....++.++....-..=.+.-+.+.|+++-.
T Consensus        28 ~~d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkmwwk   91 (96)
T 1sfc_A           28 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWK   91 (96)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4578888999999999999999999999999999998888887776666555555666665443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00