Diaphorina citri psyllid: psy11584

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570---
NLISAACILLSSLFFITHASASYAGWKENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVITDGGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVTGGRSYCVTSHRMLLQCIDSLVQKVQSGVVINFEKIGPDPPPINESKYLTLSFESNISSSFGSSTPVGTGGAMNIINSTAWHNCRKLIYVPRSAQKGFPVGFWPIPESFWPDITASSLKGFPVGFWPIPESFWPDITASSLPPRSAHPNVKFTCTSQDPLVIENLPFDKYELEPSPLTQYILARKQPTICWQVFVANSYKNSDVGHPFGYLKASTNLSTVNLFVMPYNYPALLPLIDDFFKVHRMKVTPEWRGNFQKYIGTMPSYYAAYSSSIHTMPISQMGNYQEYLKRMAAPLREVESTPVRQHMFGNPFKIDKRMMVDEADIDLVGGSPHKGGGKRSPHGDSGGGGGGVSPRLASKRKPGPIPKHVQPLRRALIRMGMPAAISQSLIPDSMENSLSYSVLSYLKRMKIQAKDEFDRN
cccHHHHHHHHccccccccccccccccccHHHHHHHHHcccccccccHHHHHHHHHHHccccccccccccccccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccHHHHHHHHHcccEEEEccHHHHHHHHHHHHHHHHccEEEEEECccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccHHHHHHccccccEEEEEEEccccccccccccEEEEccccccEEEEEEEccccccccHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHccccc
**ISAACILLSSLFFITHASASYAGWKENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVITDGGKLSNATGV*********SPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVTGGRSYCVTSHRMLLQCIDSLVQKVQSGVVINFEKIG****************************************STAWHNCRKLIYVPRSAQKGFPVGFWPIPESFWPDITASSLKGFPVGFWPIPESFWPDITASSLPPRSAHPNVKFTCTSQDPLVIENLPFDKYELEPSPLTQYILARKQPTICWQVFVANSYKNSDVGHPFGYLKASTNLSTVNLFVMPYNYPALLPLIDDFFKVHRMKVTPEWRGNFQKYIGTMPSYYAAYSSSIHTMPISQMGNYQEYLKRMAAPL********RQHMFGNPFKIDKRMMVDEA*********************************************************************SMENSLSYSVLSYLKRM***********
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SSSSSSSSSSSSSSSSSSSSSSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
NLISAACILLSSLFFITHASASYAGWKENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVITDGGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVTGGRSYCVTSHRMLLQCIDSLVQKVQSGVVINFEKIGPDPPPINESKYLTLSFESNISSSFGSSTPVGTGGAMNIINSTAWHNCRKLIYVPRSAQKGFPVGFWPIPESFWPDITASSLKGFPVGFWPIPESFWPDITASSLPPRSAHPNVKFTCTSQDPLVIENLPFDKYELEPSPLTQYILARKQPTICWQVFVANSYKNSDVGHPFGYLKASTNLSTVNLFVMPYNYPALLPLIDDFFKVHRMKVTPEWRGNFQKYIGTMPSYYAAYSSSIHTMPISQMGNYQEYLKRMAAPLREVESTPVRQHMFGNPFKIDKRMMVDEADIDLVGGSPHKGGGKRSPHGDSGGGGGGVSPRLASKRKPGPIPKHVQPLRRALIRMGMPAAISQSLIPDSMENSLSYSVLSYLKRMKIQAKDEFDRN

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Integrator complex subunit 6 Component of the Integrator complex, a complex involved in the small nuclear RNAs (snRNA) U1 and U2 transcription and in their 3'-box-dependent processing. The Integrator complex is associated with the C-terminal domain (CTD) of RNA polymerase II largest subunit (POLR2A) and is recruited to the U1 and U2 snRNAs genes. May have a tumor suppressor role; an ectopic expression suppressing tumor cell growth.confidentQ9UL03
Integrator complex subunit 6 Component of the Integrator complex, a complex involved in the small nuclear RNAs (snRNA) U1 and U2 transcription and in their 3'-box-dependent processing. The Integrator complex is associated with the C-terminal domain (CTD) of RNA polymerase II largest subunit (POLR2A) and is recruited to the U1 and U2 snRNAs genes.confidentQ6PCM2

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0034472 [BP]snRNA 3'-end processingprobableGO:0090304, GO:0034641, GO:0006807, GO:0034660, GO:1901360, GO:0016180, GO:0006139, GO:0044260, GO:0071704, GO:0010467, GO:0034470, GO:0009987, GO:0006725, GO:0031123, GO:0008150, GO:0008152, GO:0043628, GO:0046483, GO:0016070, GO:0044238, GO:0016073, GO:0044237, GO:0043170, GO:0006396

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1RRK, chain A
Confidence level:probable
Coverage over the Query: 10-62,77-179
View the alignment between query and template
View the model in PyMOL