Psyllid ID: psy11584

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570---
NLISAACILLSSLFFITHASASYAGWKENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVITDGGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVTGGRSYCVTSHRMLLQCIDSLVQKVQSGVVINFEKIGPDPPPINESKYLTLSFESNISSSFGSSTPVGTGGAMNIINSTAWHNCRKLIYVPRSAQKGFPVGFWPIPESFWPDITASSLKGFPVGFWPIPESFWPDITASSLPPRSAHPNVKFTCTSQDPLVIENLPFDKYELEPSPLTQYILARKQPTICWQVFVANSYKNSDVGHPFGYLKASTNLSTVNLFVMPYNYPALLPLIDDFFKVHRMKVTPEWRGNFQKYIGTMPSYYAAYSSSIHTMPISQMGNYQEYLKRMAAPLREVESTPVRQHMFGNPFKIDKRMMVDEADIDLVGGSPHKGGGKRSPHGDSGGGGGGVSPRLASKRKPGPIPKHVQPLRRALIRMGMPAAISQSLIPDSMENSLSYSVLSYLKRMKIQAKDEFDRN
cccHHHHHHHHccccccccccccccccccHHHHHHHHHcccccccccHHHHHHHHHHHccccccccccccccccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccHHHHHHHHHcccEEEEccHHHHHHHHHHHHHHHHccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccHHHHHHccccccEEEEEEEccccccccccccEEEEccccccEEEEEEEccccccccHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHccccc
cHHHHHHHHHHHcccccccHcccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEccccccccccccHHccccccccccccccccccccHcHHEHHEEEccccccccccccHHHHHHHHHcccEEEEccHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccEccccccccEEEcccHHHHHHHHccccccEEEEEEEccccccccccccEEEEccccccEEEEEEEccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccHHccccccHHHHccHHHHHHHcccccHcccccccccccccccccHccccEEEcccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccHHHHHHHHHHHHHcHHHcccc
NLISAACILLSSLFFITHASASYAGWKENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNrmqsgidtygqgrspfflePAVIVVItdggklsnatgvqedfnlpmhspipgsemtrepfrwdQRLFSLVLQRdmgvvacdnspidamcevtggrsycVTSHRMLLQCIDSLVQKVQSGVVInfekigpdpppineskylTLSFEsnisssfgsstpvgtggamnIINSTAWHncrkliyvprsaqkgfpvgfwpipesfwpditasslkgfpvgfwpipesfwpditasslpprsahpnvkftctsqdplvienlpfdkyelepsplTQYILARKQPTICWQVFVAnsyknsdvghpfgylkastnlstvnlfvmpynypallplIDDFFKVHRMKVTPEWRGNFQKYIGTMPSYYAAYSSsihtmpisqmgNYQEYLKRMAaplrevestpvrqhmfgnpfkidkrmmvdeadidlvggsphkgggkrsphgdsggggggvsprlaskrkpgpipkhvQPLRRALIRMgmpaaisqslipdsmenslSYSVLSYLKRMKIQakdefdrn
NLISAACILLSSLFFITHASASYAGWKENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVITDGGKLSNatgvqedfnlpMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVTGGRSYCVTSHRMLLQCIDSLVQKVQSGVVINfekigpdpppiNESKYLTLSFESNISSSFGSSTPVGTGGAMNIINSTAWHNCRKLIYVPRSAQKGFPVGFWPIPESFWPDITASSLKGFPVGFWPIPESFWPDITASSLPPRSAHPNVKFTCTSQDPLVIENLPFDKYELEPSPLTQYILARKQPTICWQVFVANSYKNSDVGHPFGYLKASTNLSTVNLFVMPYNYPALLPLIDDFFKVHRMKVTPEWRGNFQKYIGTMPSYYAAYSSSIHTMPISQMGNYQEYLKRMAAPLRevestpvrqhmfgnpfkidkrmMVDEADIDLVGgsphkgggkrsphgdsgggGGGVSPRlaskrkpgpipkhVQPLRRALIRMGMPAAIsqslipdsmeNSLSYSVLSYLKRMkiqakdefdrn
NlisaacillsslFFITHASASYAGWKENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVITDGGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVTGGRSYCVTSHRMLLQCIDSLVQKVQSGVVINFEKIGPDPPPINESKYLTLsfesnisssfgssTPVGTGGAMNIINSTAWHNCRKLIYVPRSAQKGFPVGFWPIPESFWPDITASSLKGFPVGFWPIPESFWPDITASSLPPRSAHPNVKFTCTSQDPLVIENLPFDKYELEPSPLTQYILARKQPTICWQVFVANSYKNSDVGHPFGYLKASTNLSTVNLFVMPYNYPALLPLIDDFFKVHRMKVTPEWRGNFQKYIGTMPSYYAAYSSSIHTMPISQMGNYQEYLKRMAAPLREVESTPVRQHMFGNPFKIDKRMMVDEADIDLVGGSPHKgggkrsphgdsggggggvsPRLASKRKPGPIPKHVQPLRRALIRMGMPAAISQSLIPDSMENSLSYSVLSYLKRMKIQAKDEFDRN
**ISAACILLSSLFFITHASASYAGWKENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVITDGGKLSNATGV********************PFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVTGGRSYCVTSHRMLLQCIDSLVQKVQSGVVINFEKIG**********YLTLS**************VGTGGAMNIINSTAWHNCRKLIYVPRSAQKGFPVGFWPIPESFWPDITASSLKGFPVGFWPIPESFWPDITAS*********NVKFTCTSQDPLVIENLPFDKYELEPSPLTQYILARKQPTICWQVFVANSYKNSDVGHPFGYLKASTNLSTVNLFVMPYNYPALLPLIDDFFKVHRMKVTPEWRGNFQKYIGTMPSYYAAYSSSIHTMPISQMGNYQEYLKRMAAPL**********HMFGNPFKIDK*M*********************************************************************************YSVLSYL**************
***SAACILLSSLFFITHASASYAGWKENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVITDGGKLSNATGV*********SPIPGSEMTREPFRWDQRLFSLVLQRDMG****DNSPIDAMCEVTGGRSYCVTSHRMLLQCIDSLVQKVQSGVVINFEK*******************************************TAWHNCRKLIYVPRSAQKGFPVGFWPIPESFWPDITASSLKGFPVGFWPIPESFWPDITASSLPPRSAHPNVKFTCTSQDPLVIENLPFDKYELEPSPLTQYILARKQPTICWQVFVAN**********FGYLKASTNLSTVNLFVMPYNYPALLPLIDDFFKVHRMKVTPEWRGNFQKYIGTMPSYYAAYSSSIHTMPISQMGNY*******************RQHMFGNPFKIDKRMMVDEA*********************************************************************SMENSLSYSVLSYLKRM***********
NLISAACILLSSLFFITHASASYAGWKENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVITDGGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVTGGRSYCVTSHRMLLQCIDSLVQKVQSGVVINFEKIGPDPPPINESKYLTLSFESNISSSFGSSTPVGTGGAMNIINSTAWHNCRKLIYVPRSAQKGFPVGFWPIPESFWPDITASSLKGFPVGFWPIPESFWPDITASSLPPRSAHPNVKFTCTSQDPLVIENLPFDKYELEPSPLTQYILARKQPTICWQVFVANSYKNSDVGHPFGYLKASTNLSTVNLFVMPYNYPALLPLIDDFFKVHRMKVTPEWRGNFQKYIGTMPSYYAAYSSSIHTMPISQMGNYQEYLKRMAAPLREVESTPVRQHMFGNPFKIDKRMMVDEADIDLVGGSP**********************RLASKRKPGPIPKHVQPLRRALIRMGMPAAISQSLIPDSMENSLSYSVLSYLKRMKIQAKDEFDRN
NLISAACILLSSLFFITHASASYAGWKENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVITDGGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVTGGRSYCVTSHRMLLQCIDSLVQKVQSGVVINFEKIGPDPP************************************STAWHNCRKLIYVPRSAQKGFPVGFWPIPESFWPDITASSLKGFPVGFWPIPESFWPDITASSLPPRSAHPNVKFTCTSQDPLVIENLPFDKYELEPSPLTQYILARKQPTICWQVFVANSYKNSDVGHPFGYLKASTNLSTVNLFVMPYNYPALLPLIDDFFKVHRMKVTPEWRGNFQKYIGTMPSYYAAYSSSIHTMPISQMGNYQEYLKRMAAPLREVESTPVRQHMFGNPFKIDKRMMVDEADIDLVG*************************************K*****RR*LIRMGMPAAISQSLIPDSMENSLSYSVLSYLKRMKIQAKDE****
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SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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NLISAACILLSSLFFITHASASYAGWKENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVITDGGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVTGGRSYCVTSHRMLLQCIDSLVQKVQSGVVINFEKIGPDPPPINESKYLTLSFESNISSSFGSSTPVGTGGAMNIINSTAWHNCRKLIYVPRSAQKGFPVGFWPIPESFWPDITASSLKGFPVGFWPIPESFWPDITASSLPPRSAHPNVKFTCTSQDPLVIENLPFDKYELEPSPLTQYILARKQPTICWQVFVANSYKNSDVGHPFGYLKASTNLSTVNLFVMPYNYPALLPLIDDFFKVHRMKVTPEWRGNFQKYIGTMPSYYAAYSSSIHTMPISQMGNYQEYLKRMAAPLREVESTPVRQHMFGNPFKIDKRMMVDEADIDLVGGSPHKGGGKRSPHGDSGGGGGGVSPRLASKRKPGPIPKHVQPLRRALIRMGMPAAISQSLIPDSMENSLSYSVLSYLKRMKIQAKDEFDRN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query573 2.2.26 [Sep-21-2011]
Q2TAF4 883 Integrator complex subuni N/A N/A 0.636 0.413 0.540 1e-131
Q6PCM2 883 Integrator complex subuni yes N/A 0.617 0.400 0.566 1e-127
Q9UL03 887 Integrator complex subuni yes N/A 0.617 0.399 0.563 1e-126
Q5JSJ4 861 Protein DDX26B OS=Homo sa no N/A 0.619 0.412 0.567 1e-126
Q8BND4 861 Protein DDX26B OS=Mus mus no N/A 0.619 0.412 0.555 1e-125
Q7SYD9 892 Integrator complex subuni no N/A 0.619 0.397 0.565 1e-124
Q5U4W6 883 Integrator complex subuni N/A N/A 0.612 0.397 0.565 1e-124
Q54Z23 1107 Integrator complex subuni yes N/A 0.605 0.313 0.373 2e-72
>sp|Q2TAF4|INT6A_XENLA Integrator complex subunit 6-A OS=Xenopus laevis GN=ints6-a PE=2 SV=1 Back     alignment and function desciption
 Score =  469 bits (1206), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 234/433 (54%), Positives = 292/433 (67%), Gaps = 68/433 (15%)

Query: 24  AGWKENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPA 83
           AGWKEN  TFM ELKNLQ  G+T LG +L+  FD+LN+NR+ +GID YGQGR+PFFLEP+
Sbjct: 64  AGWKENHATFMNELKNLQAVGLTTLGQSLRTAFDLLNLNRLVTGIDNYGQGRNPFFLEPS 123

Query: 84  VIVVITDGGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVL---------Q 134
           +I+VITDG KL+ A GVQ++ +LP++SP+PGSE+T+EPFRWDQRLF+LVL         Q
Sbjct: 124 IIIVITDGSKLTTANGVQDELHLPLYSPLPGSELTKEPFRWDQRLFALVLRLPGASLVEQ 183

Query: 135 RDMGVVACDNSPIDAMCEVTGGRSYCVTSHRMLLQCIDSLVQKVQSGVVINFEKIGPDPP 194
                V  D SPI AMC+VTGGRSY VTS R+L QC++SLVQKVQSGVVI+FEK GPDPP
Sbjct: 184 EQPPAVQFDESPITAMCDVTGGRSYSVTSQRILNQCLESLVQKVQSGVVIHFEKSGPDPP 243

Query: 195 PINESKYLTLSFESNISSSFGSSTPVGTGGAMNIINSTAWHNCRKLIYVPRSAQKGFPVG 254
            + +                G + PV + G      S  WHNC KLIYV           
Sbjct: 244 ILED----------------GLTDPVRSVG------SQPWHNCHKLIYV----------- 270

Query: 255 FWPIPESFWPDITASSLKGFPVGFWPIPESFWPDITASSLPPRSAHPNVKFTCTSQDPLV 314
             P P++           G P+G WPIPESFWPD  + +LPPR++HP VKF+CT  +P++
Sbjct: 271 -RPNPKT-----------GVPLGHWPIPESFWPDQNSPTLPPRTSHPVVKFSCTDSEPMI 318

Query: 315 IENLPFDKYELEPSPLTQYILARKQPTICWQVFVANSYKNSDVGHPFGYLKASTNLSTVN 374
           I+ LPFDKYELEPSPLTQ+IL RK P  CW VFVANS K S++GHPFGYLKAST L+ VN
Sbjct: 319 IDKLPFDKYELEPSPLTQFILERKSPHSCWPVFVANSAKYSELGHPFGYLKASTALNCVN 378

Query: 375 LFVMPYNYPALLPLIDDFFKVHRMKVTPEWRGNFQKYIGTMPSYYAAYSSSIHTMPISQM 434
           LFV+PYNYP  LPL+DD FK+H+ K + +WR  F+ Y+ TMP YY              +
Sbjct: 379 LFVLPYNYPVFLPLLDDLFKIHKNKPSLKWRQLFENYLKTMPPYY--------------I 424

Query: 435 GNYQEYLKRMAAP 447
           G  ++ L+ M AP
Sbjct: 425 GPLKKALRMMGAP 437
Component of the Integrator complex, a complex involved in the small nuclear RNAs (snRNA) U1 and U2 transcription and in their 3'-box-dependent processing.
Xenopus laevis (taxid: 8355)
>sp|Q6PCM2|INT6_MOUSE Integrator complex subunit 6 OS=Mus musculus GN=Ints6 PE=2 SV=1 Back     alignment and function description
>sp|Q9UL03|INT6_HUMAN Integrator complex subunit 6 OS=Homo sapiens GN=INTS6 PE=1 SV=1 Back     alignment and function description
>sp|Q5JSJ4|DX26B_HUMAN Protein DDX26B OS=Homo sapiens GN=DDX26B PE=1 SV=1 Back     alignment and function description
>sp|Q8BND4|DX26B_MOUSE Protein DDX26B OS=Mus musculus GN=Ddx26b PE=1 SV=1 Back     alignment and function description
>sp|Q7SYD9|INT6_DANRE Integrator complex subunit 6 OS=Danio rerio GN=ints6 PE=2 SV=1 Back     alignment and function description
>sp|Q5U4W6|INT6B_XENLA Integrator complex subunit 6-B OS=Xenopus laevis GN=ints6-b PE=2 SV=1 Back     alignment and function description
>sp|Q54Z23|INT6_DICDI Integrator complex subunit 6 homolog OS=Dictyostelium discoideum GN=ints6 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query573
345498153 1044 PREDICTED: integrator complex subunit 6- 0.654 0.359 0.683 1e-169
66534441 964 PREDICTED: integrator complex subunit 6- 0.652 0.387 0.706 1e-164
380029678 966 PREDICTED: LOW QUALITY PROTEIN: integrat 0.652 0.387 0.704 1e-164
332019787 987 Integrator complex subunit 6-A [Acromyrm 0.654 0.379 0.704 1e-164
383862705 967 PREDICTED: protein DDX26B-like [Megachil 0.650 0.385 0.700 1e-163
322796014 988 hypothetical protein SINV_10407 [Solenop 0.654 0.379 0.704 1e-163
307210841 986 Integrator complex subunit 6-A [Harpegna 0.654 0.380 0.701 1e-162
242025482 955 dice1/dead/H box polypeptide, putative [ 0.633 0.380 0.678 1e-162
340719415 966 PREDICTED: integrator complex subunit 6- 0.645 0.383 0.695 1e-161
350410398 966 PREDICTED: integrator complex subunit 6- 0.649 0.385 0.700 1e-161
>gi|345498153|ref|XP_001605799.2| PREDICTED: integrator complex subunit 6-like [Nasonia vitripennis] Back     alignment and taxonomy information
 Score =  601 bits (1550), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 292/427 (68%), Positives = 335/427 (78%), Gaps = 52/427 (12%)

Query: 24  AGWKENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPA 83
           AGWKENL TFM ELKNLQC G+T LGAALK+ FDVLN+NRMQ+GIDTYGQGR PF+LEP+
Sbjct: 66  AGWKENLATFMNELKNLQCVGLTTLGAALKNAFDVLNINRMQTGIDTYGQGRCPFYLEPS 125

Query: 84  VIVVITDGGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVL--------QR 135
           VIVVITDGGK + + GV +DF LPMH+ IPGSE+T+EPFRWDQRLFSLVL        +R
Sbjct: 126 VIVVITDGGKYTTSNGVHQDFTLPMHALIPGSELTKEPFRWDQRLFSLVLRLSGTPAVER 185

Query: 136 DMGVVACDNSPIDAMCEVTGGRSYCVTSHRMLLQCIDSLVQKVQSGVVINFEKIGPDPPP 195
           D G+VA D+SPIDAMCEVTGGRSYC+TSHRM++QCIDSLVQKVQSGVVINFEKIGPDP P
Sbjct: 186 DTGLVASDSSPIDAMCEVTGGRSYCITSHRMMMQCIDSLVQKVQSGVVINFEKIGPDPLP 245

Query: 196 I-NE---SKYLTLSFESN--------------ISSSFGSSTPV-GTGGAM--NIINSTAW 234
           + NE   S +  L  E++               ++S+ +S  V G    +  N+ N+TAW
Sbjct: 246 VANEAPNSVHPELDEENDEEMTGPTANGSVTGRNASYANSNSVPGIASVIPNNLSNNTAW 305

Query: 235 HNCRKLIYVPRSAQKGFPVGFWPIPESFWPDITASSLKGFPVGFWPIPESFWPDITASSL 294
           H+CR+LIYVPRSAQKGF VG                       FWPIPESFWPDI+ASSL
Sbjct: 306 HSCRRLIYVPRSAQKGFAVG-----------------------FWPIPESFWPDISASSL 342

Query: 295 PPRSAHPNVKFTCTSQDPLVIENLPFDKYELEPSPLTQYILARKQPTICWQVFVANSYKN 354
           PPRSAHPNVKFTCTSQ+PLVIENLPFDKYELEPSPLTQ+ILARKQPTICWQVF+ANSYK+
Sbjct: 343 PPRSAHPNVKFTCTSQEPLVIENLPFDKYELEPSPLTQFILARKQPTICWQVFIANSYKS 402

Query: 355 SDVGHPFGYLKASTNLSTVNLFVMPYNYPALLPLIDDFFKVHRMKVTPEWRGNFQKYIGT 414
           S+VGHPFGYLKASTNL+ VNLFVMPYNYP LLPL+D+ FKVHRMK + EWR  F  Y+ T
Sbjct: 403 SEVGHPFGYLKASTNLTCVNLFVMPYNYPVLLPLLDELFKVHRMKPSAEWRAQFANYMRT 462

Query: 415 MPSYYAA 421
           MP+YYAA
Sbjct: 463 MPAYYAA 469

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|66534441|ref|XP_395179.2| PREDICTED: integrator complex subunit 6-like [Apis mellifera] Back     alignment and taxonomy information
>gi|380029678|ref|XP_003698494.1| PREDICTED: LOW QUALITY PROTEIN: integrator complex subunit 6-A-like [Apis florea] Back     alignment and taxonomy information
>gi|332019787|gb|EGI60248.1| Integrator complex subunit 6-A [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|383862705|ref|XP_003706824.1| PREDICTED: protein DDX26B-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|322796014|gb|EFZ18638.1| hypothetical protein SINV_10407 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|307210841|gb|EFN87194.1| Integrator complex subunit 6-A [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|242025482|ref|XP_002433153.1| dice1/dead/H box polypeptide, putative [Pediculus humanus corporis] gi|212518694|gb|EEB20415.1| dice1/dead/H box polypeptide, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|340719415|ref|XP_003398149.1| PREDICTED: integrator complex subunit 6-B-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350410398|ref|XP_003489033.1| PREDICTED: integrator complex subunit 6-like [Bombus impatiens] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query573
MGI|MGI:2442593 861 Ddx26b "DEAD/H (Asp-Glu-Ala-As 0.401 0.267 0.556 2.1e-147
UNIPROTKB|E1BV07 888 INTS6 "Uncharacterized protein 0.308 0.199 0.629 5.2e-138
MGI|MGI:1202397 883 Ints6 "integrator complex subu 0.308 0.200 0.639 1.4e-137
UNIPROTKB|E1BF57 879 INTS6 "Uncharacterized protein 0.308 0.201 0.629 5.3e-137
UNIPROTKB|F1RK31 879 INTS6 "Uncharacterized protein 0.308 0.201 0.629 5.3e-137
UNIPROTKB|Q9UL03 887 INTS6 "Integrator complex subu 0.308 0.199 0.629 8e-137
ZFIN|ZDB-GENE-040426-1150 892 ddx26b "DEAD/H (Asp-Glu-Ala-As 0.305 0.196 0.641 1.7e-136
FB|FBgn0261383 1284 IntS6 "Integrator 6" [Drosophi 0.417 0.186 0.525 6e-119
UNIPROTKB|B3KQH5 709 INTS6 "Integrator complex subu 0.256 0.207 0.673 3.8e-96
DICTYBASE|DDB_G0277953 1107 ints6 "integrator complex subu 0.284 0.147 0.459 2.2e-79
MGI|MGI:2442593 Ddx26b "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
 Score = 725 (260.3 bits), Expect = 2.1e-147, Sum P(3) = 2.1e-147
 Identities = 143/257 (55%), Positives = 179/257 (69%)

Query:    24 AGWKENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEPA 83
             AGWKEN  TFM ELKNLQ +G+T LG AL+ +FD+LN+NR+ SGID YGQGR+PFFLEP+
Sbjct:    64 AGWKENHATFMNELKNLQASGLTTLGQALRSSFDLLNLNRLISGIDNYGQGRNPFFLEPS 123

Query:    84 VIVVITDGGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQ--------- 134
             +++ ITDG KL++   VQE+ +LP++SP+PGSE+T+EPFRWDQRLF+LVL+         
Sbjct:   124 ILITITDGNKLTSTASVQEELHLPLNSPLPGSELTKEPFRWDQRLFALVLRLPGVASTEP 183

Query:   135 RDMGVVACDNSPIDAMCEVTGGRSYCVTSHRMLLQCIDSLVQKVQSGVVINFEKIGPDPP 194
               +G V  D S I  MCEVTGGRSYCV + RML QC++SLVQKVQSGVVINFEK GPDP 
Sbjct:   184 EQLGSVPSDESAITQMCEVTGGRSYCVRTQRMLNQCLESLVQKVQSGVVINFEKTGPDPL 243

Query:   195 PINESKYLTLXXXXXXXXXXXXXTPVGTGGAMNIINSTAWHNCRKLIYVPRSAQKGFPVG 254
             P+ E   + L              P       N+  +  WH+C KLIYV  +++ G PVG
Sbjct:   244 PVGEDTLMELCR------------P------SNLFAAQPWHSCHKLIYVRPNSKTGVPVG 285

Query:   255 FWPIPESFWPDITASSL 271
              WPIPESFWP+    SL
Sbjct:   286 HWPIPESFWPEQNLPSL 302
GO:0003674 "molecular_function" evidence=ND
GO:0005575 "cellular_component" evidence=ND
GO:0008150 "biological_process" evidence=ND
UNIPROTKB|E1BV07 INTS6 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1202397 Ints6 "integrator complex subunit 6" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1BF57 INTS6 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1RK31 INTS6 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UL03 INTS6 "Integrator complex subunit 6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1150 ddx26b "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0261383 IntS6 "Integrator 6" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|B3KQH5 INTS6 "Integrator complex subunit 6, isoform CRA_b" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0277953 ints6 "integrator complex subunit 6" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9UL03INT6_HUMANNo assigned EC number0.56370.61780.3990yesN/A
Q6PCM2INT6_MOUSENo assigned EC number0.56610.61780.4009yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 573
KOG3768|consensus 888 100.0
KOG3768|consensus 888 98.36
PF13519172 VWA_2: von Willebrand factor type A domain; PDB: 3 98.11
cd01453183 vWA_transcription_factor_IIH_type Transcription fa 98.01
cd01463190 vWA_VGCC_like VWA Voltage gated Calcium channel li 97.85
PRK13685326 hypothetical protein; Provisional 97.8
cd01461171 vWA_interalpha_trypsin_inhibitor vWA_interalpha tr 97.75
TIGR03436296 acidobact_VWFA VWFA-related Acidobacterial domain. 97.68
cd01451178 vWA_Magnesium_chelatase Magnesium chelatase: Mg-ch 97.65
PF13768155 VWA_3: von Willebrand factor type A domain 97.62
cd01465170 vWA_subgroup VWA subgroup: Von Willebrand factor t 97.49
TIGR03788596 marine_srt_targ marine proteobacterial sortase tar 97.39
cd01455191 vWA_F11C1-5a_type Von Willebrand factor type A (vW 97.33
cd01456206 vWA_ywmD_type VWA ywmD type:Von Willebrand factor 97.29
TIGR00868863 hCaCC calcium-activated chloride channel protein 1 97.19
cd01467180 vWA_BatA_type VWA BatA type: Von Willebrand factor 97.11
cd01470198 vWA_complement_factors Complement factors B and C2 97.01
cd01466155 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand fact 97.01
TIGR02442633 Cob-chelat-sub cobaltochelatase subunit. A number 96.91
cd01474185 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxi 96.83
TIGR02031589 BchD-ChlD magnesium chelatase ATPase subunit D. Th 96.39
cd01462152 VWA_YIEM_type VWA YIEM type: Von Willebrand factor 95.88
PRK13406584 bchD magnesium chelatase subunit D; Provisional 95.83
cd01472164 vWA_collagen von Willebrand factor (vWF) type A do 95.72
cd01476163 VWA_integrin_invertebrates VWA_integrin (invertebr 95.15
cd01480186 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI 94.81
cd01450161 vWFA_subfamily_ECM Von Willebrand factor type A (v 94.12
cd01454174 vWA_norD_type norD type: Denitrifying bacteria con 93.83
cd01464176 vWA_subfamily VWA subfamily: Von Willebrand factor 93.61
PTZ00441576 sporozoite surface protein 2 (SSP2); Provisional 92.99
cd01475224 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, 92.6
PF00092178 VWA: von Willebrand factor type A domain; InterPro 92.34
COG1240261 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolis 92.12
cd01471186 vWA_micronemal_protein Micronemal proteins: The To 92.07
cd01482164 vWA_collagen_alphaI-XII-like Collagen: The extrace 91.22
COG4245207 TerY Uncharacterized protein encoded in toxicity p 90.39
smart00327177 VWA von Willebrand factor (vWF) type A domain. VWA 89.46
cd00198161 vWFA Von Willebrand factor type A (vWA) domain was 87.14
cd01469177 vWA_integrins_alpha_subunit Integrins are a class 84.83
cd01477193 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand 84.83
cd01473192 vWA_CTRP CTRP for CS protein-TRAP-related protein: 83.25
>KOG3768|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.5e-167  Score=1328.77  Aligned_cols=464  Identities=48%  Similarity=0.818  Sum_probs=427.6

Q ss_pred             cccccccccccccccccchHHHHHHhhccccCCCchhHHHHHH-HHHHHhhhhcccCCCCCCCCcCCccccCcEEEEEec
Q psy11584         12 SLFFITHASASYAGWKENLTTFMTELKNLQCTGMTLLGAALKH-TFDVLNMNRMQSGIDTYGQGRSPFFLEPAVIVVITD   90 (573)
Q Consensus        12 llT~ee~p~~VKaGWken~~~F~~ELKnLqa~glt~lg~AL~~-AFdlLN~nRlqsGID~yG~GR~P~~lEPavII~iTD   90 (573)
                      |+||||+|.||||||++++++||+|||||+|.+.+..++.+.. ||||||+||||+|||+|||||+|||+||++||+|||
T Consensus        52 l~TfeepP~~vk~~~~~~~a~~~~eik~l~a~~~s~~~~~~~t~AFdlLnlnR~qtGID~yGqGR~pf~lEP~~iI~iTD  131 (888)
T KOG3768|consen   52 LTTFEEPPKNVKVACEKLGAVVIEEIKKLHAPYGSCQLHHAITEAFDLLNLNRVQTGIDGYGQGRLPFNLEPVTIILITD  131 (888)
T ss_pred             EEecccCchhhhhHHhhcccHHHHHHHhhcCccchhhhhHHHHHHhhhhhhhhhhhcccccccccCccccCceEEEEEec
Confidence            6999999999999999999999999999999887777766666 999999999999999999999999999999999999


Q ss_pred             CCCccCCCCcccccccCCCCCCCCCCCCCCCccccceeeEEEEe---------ecCCcccCCCchHHHHHhHhCCceEEE
Q psy11584         91 GGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQ---------RDMGVVACDNSPIDAMCEVTGGRSYCV  161 (573)
Q Consensus        91 G~~lt~~~Gv~~el~Lp~~s~~pGsELTkEPFRWDQRLFslVL~---------~~~g~vp~d~spI~amCEvTGGrsy~v  161 (573)
                      |++++..+||++||+||++++++|+||||||||||||||+|||+         +..+.||.|+|+|+.||||||||||.|
T Consensus       132 G~r~s~~~GV~~e~~Lpl~~p~pGse~TkepFRWDQrlftlVlRiPgt~~~~~~qlt~Vp~Dds~IermCevTGGRSysV  211 (888)
T KOG3768|consen  132 GGRYSGVAGVPIEFRLPLDPPFPGSEMTKEPFRWDQRLFTLVLRIPGTPYPTISQLTAVPIDDSVIERMCEVTGGRSYSV  211 (888)
T ss_pred             CCccccccCCceeEEeccCCCCCccccccccchhhhhhheeeEecCCCCCccHhhhcCCCCCchhhHHhhhhcCCceeee
Confidence            99999999999999999999999999999999999999999996         235678999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHHhcccceEEeeeecCCCCCCCccccccccccccccCCCCCCCCCCCCCCCccccCCccc-ccceeE
Q psy11584        162 TSHRMLLQCIDSLVQKVQSGVVINFEKIGPDPPPINESKYLTLSFESNISSSFGSSTPVGTGGAMNIINSTAW-HNCRKL  240 (573)
Q Consensus       162 ~S~k~L~qciesLvqkvq~gVVinFe~~gp~p~~~~~~~~~~~~e~~~~~~~f~~~~p~~~~~~~~~~~~~~w-~~~~~l  240 (573)
                      .|+|+|+||||+||||+|+||||+|||++|+|+|+..+.       .              +.....++..+| |.|++|
T Consensus       212 ~Spr~lnqciesLvqkvQ~gVvv~FE~~~p~papi~s~~-------~--------------~~Is~~fg~~p~~~pv~ki  270 (888)
T KOG3768|consen  212 VSPRQLNQCIESLVQKVQYGVVVRFECLPPIPAPITSDE-------V--------------NLISMKFGKVPDKRPVTKI  270 (888)
T ss_pred             eCHHHHHHHHHHHHHhhccCeEEEeeecCCCCCCcccCc-------c--------------ccccccccCCCCCCcccee
Confidence            999999999999999999999999999999999876421       0              122234667788 999999


Q ss_pred             EEecCCCCCCCCcccccCCCCCCcccccccCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCcEEEeecCCCcccccCCCC
Q psy11584        241 IYVPRSAQKGFPVGFWPIPESFWPDITASSLKGFPVGFWPIPESFWPDITASSLPPRSAHPNVKFTCTSQDPLVIENLPF  320 (573)
Q Consensus       241 iyv~~~~~~g~p~G~WPIPE~~~p~~~~~~~~~~~~~~WpIPEsFWPD~~~~~LPpR~AHP~I~fs~~~~eP~vi~~fPf  320 (573)
                      |||..+..+++++|||||||                       +||||+++++||||++||+|+|+|..+||+++++|||
T Consensus       271 Iyv~~~~~~~~pighWPiPE-----------------------sfwPd~~~~tLPpRtsHPvik~~~~a~ep~i~~~lPv  327 (888)
T KOG3768|consen  271 IYVLNPQARPFPIGHWPIPE-----------------------SFWPDRTMDTLPPRTSHPVIKCAPIALEPHIRPELPV  327 (888)
T ss_pred             EEecCCCCCCCccccCCCCc-----------------------ccCCcccCCCCCCCCCCceeEeecCCCChhhcccCCc
Confidence            99999999999999999988                       9999999999999999999999999999999999999


Q ss_pred             ceeeecCCchhHHHhhcCCCCceEEEEEcCCCCCCCCCCCceeeecCCCCCeeEEEEecCCccchhhhHHHHHHhhcCCC
Q psy11584        321 DKYELEPSPLTQYILARKQPTICWQVFVANSYKNSDVGHPFGYLKASTNLSTVNLFVMPYNYPALLPLIDDFFKVHRMKV  400 (573)
Q Consensus       321 DKYELEpspLTq~iL~rk~p~~cWqvfV~nS~~~~~~g~PFGyLKast~~~~VnLfVLPYNYP~LlpLLdel~kv~k~~p  400 (573)
                      |||||||||||++||+++++++||||+|.|+++++++++|||||||+|+++||||||||||||+||||||||+|+|+++|
T Consensus       328 DKyElEp~plt~~Ile~~~~~kcwqV~v~n~~~~~el~~PFGyLka~t~~t~V~L~vmpyNyP~Llpll~dlvk~~~~~p  407 (888)
T KOG3768|consen  328 DKYELEPGPLTDIILEILQGRKCWQVWVYNEGSSNELTAPFGYLKANTLGTGVTLIVMPYNYPMLLPLLEDLVKEPFLNP  407 (888)
T ss_pred             chhcccCCcHHHHHHHHhccCcceEEEEecCcccCCCCCccceeeeccCcCceEEEEecccchHHHHHHHHHHhhhcCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHhcCCccccc--------------c----------cc--------------------------------
Q psy11584        401 TPEWRGNFQKYIGTMPSYYAA--------------Y----------SS--------------------------------  424 (573)
Q Consensus       401 s~~Wr~~F~~Yl~tvP~YY~~--------------y----------~~--------------------------------  424 (573)
                      +++||++|++|++|||+||.+              |          +|                                
T Consensus       408 s~~wr~kfesY~~tvPpYY~~~lrkal~~~~vp~l~~~sm~~~ls~~l~s~Lk~~k~~Ak~e~d~~~~~v~k~~~q~~~i  487 (888)
T KOG3768|consen  408 SQVWRSKFESYFHTVPPYYNTQLRKALDKFDVPVLYSSSMSMFLSGQLLSNLKRFKAKAKEELDQMAIAVKKNDSQTLKI  487 (888)
T ss_pred             hHHHHHHHHHHhhcCCcccchHHHHHHHhcCCcccchhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCC
Confidence            999999999999999999999              0          00                                


Q ss_pred             --------------------------------------------------------------------------------
Q psy11584        425 --------------------------------------------------------------------------------  424 (573)
Q Consensus       425 --------------------------------------------------------------------------------  424 (573)
                                                                                                      
T Consensus       488 ~~rsi~~g~~~s~~~~~~~l~~~~~~eD~~~~l~e~~pie~~~f~Vpl~~~~~t~~~~rnaydiPrr~lie~lt~mr~~l  567 (888)
T KOG3768|consen  488 VNRSIRIGRITSRSTIIGLLNSEVDIEDDSLELYESTPIEAGDFKVPLYPPSITDAQLRNAYDIPRRSLIEDLTSMRNRL  567 (888)
T ss_pred             CccceeeeeecccchHHhhhhcccccccchhhhhccCceeccceeeecCCCccChhhhcccccCccccHHHHHHHHHHHh
Confidence                                                                                            


Q ss_pred             ------------cccccccccccChHHHHhhcCCCCccCCCCcccccccCCCcccccc-eeeecccccccCCCCCCCCCC
Q psy11584        425 ------------SIHTMPISQMGNYQEYLKRMAAPLREVESTPVRQHMFGNPFKIDKR-MMVDEADIDLVGGSPHKGGGK  491 (573)
Q Consensus       425 ------------~~h~~Pi~qmGnYqeylk~~~~pLRe~~~~~~R~h~FgNpfk~dk~-mmvdEad~~~~~~~~~~~~~k  491 (573)
                                  ++|++|||+|||||||||..+.||||++|+++||||||||||+||+ |||||||++++|++..   .+
T Consensus       568 l~~~~l~~~D~~~ih~lpiA~mGnyqeylk~~~~plrem~p~~~r~h~fgnp~k~dk~~~mvdead~~vagp~~~---~~  644 (888)
T KOG3768|consen  568 LAPNILLMFDPNKIHLLPIAKMGNYQEYLKLGLCPLREMSPTNVRQHMFGNPYKKDKHMVMVDEADLSVAGPSSP---GS  644 (888)
T ss_pred             hhhhhhhccCCCcceeeeHHHhccHHHHHhcCCCccccCChhhhhHhhcCCccccccceeeeecccccccCCCCC---CC
Confidence                        7999999999999999999999999999999999999999999998 6999999999988643   34


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhh
Q psy11584        492 RSPHGDSGGGGGGVSPRLASKRKPGPIPKHVQPLRRAL  529 (573)
Q Consensus       492 r~~~~~~~~~~~~~~~~~~~krk~gpLp~yf~plr~a~  529 (573)
                      |+       ++.++.+-.-||||+||||+-|...|-+-
T Consensus       645 ~p-------g~p~m~gmpkrkr~~~pl~r~~e~~~~~~  675 (888)
T KOG3768|consen  645 SP-------GGPGMPGMPKRKRKAGPLPRSFEFRRSST  675 (888)
T ss_pred             CC-------CCCCCCCCcccccccCCCccchhcCcccc
Confidence            44       11333333469999999999888766653

>KOG3768|consensus Back     alignment and domain information
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A Back     alignment and domain information
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme Back     alignment and domain information
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta Back     alignment and domain information
>PRK13685 hypothetical protein; Provisional Back     alignment and domain information
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin) Back     alignment and domain information
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain Back     alignment and domain information
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto) Back     alignment and domain information
>PF13768 VWA_3: von Willebrand factor type A domain Back     alignment and domain information
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein Back     alignment and domain information
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>TIGR00868 hCaCC calcium-activated chloride channel protein 1 Back     alignment and domain information
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation Back     alignment and domain information
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit Back     alignment and domain information
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax Back     alignment and domain information
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D Back     alignment and domain information
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>PRK13406 bchD magnesium chelatase subunit D; Provisional Back     alignment and domain information
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins Back     alignment and domain information
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions Back     alignment and domain information
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases Back     alignment and domain information
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional Back     alignment and domain information
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity Back     alignment and domain information
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma Back     alignment and domain information
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism] Back     alignment and domain information
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell Back     alignment and domain information
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only] Back     alignment and domain information
>smart00327 VWA von Willebrand factor (vWF) type A domain Back     alignment and domain information
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration Back     alignment and domain information
>cd01477 vWA_F09G8-8_type VWA F09G8 Back     alignment and domain information
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query573
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 59.5 bits (143), Expect = 2e-09
 Identities = 78/524 (14%), Positives = 137/524 (26%), Gaps = 173/524 (33%)

Query: 28  ENLTTFMTELK---NLQCTGMTLLGAALKHTF--DVLNMNRMQSGID------TYGQGRS 76
             L   + EL+   N+   G+  LG+  K     DV    ++Q  +D            S
Sbjct: 138 LKLRQALLELRPAKNVLIDGV--LGSG-KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194

Query: 77  P-FFLEPAVIVVITDGGKLSN-ATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFS---- 130
           P   LE            L      +  ++                     +RL      
Sbjct: 195 PETVLEM-----------LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 131 ----LVLQRDMGVVACDNSPIDAM---CEV---TGGRSYCVTSHRMLLQCIDSLVQKVQS 180
               LVL  +   V  +    +A    C++   T  R   VT         D L     +
Sbjct: 244 ENCLLVL-LN---V-QNAKAWNAFNLSCKILLTT--RFKQVT---------DFLSAATTT 287

Query: 181 GVVINFEKIGPDPPPINESKYLTLSFESNISSSFGSSTPVGTGGAMNIINSTAWHNCRKL 240
            + ++   +   P    E K L L +                               + L
Sbjct: 288 HISLDHHSMTLTPD---EVKSLLLKY--------------------------LDCRPQDL 318

Query: 241 IYVPRSAQKGFPVGFWPIPES---------FWPDIT--------ASSLKG---------- 273
              PR      P     I ES          W  +          SSL            
Sbjct: 319 ---PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375

Query: 274 -----FPVGFWPIPES----FWPDITASSLPPRSAHPNVKFTCTSQDP----LVIENLPF 320
                FP     IP       W D+   S      +   K++   + P    + I ++  
Sbjct: 376 DRLSVFPPSAH-IPTILLSLIWFDVI-KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433

Query: 321 D-------KYELEPSPLTQYILARKQPTICWQVFVANSYKNSDVGHP---------FGY- 363
           +       +Y L  S +  Y + +              + + D+  P          G+ 
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKT-------------FDSDDLIPPYLDQYFYSHIGHH 480

Query: 364 LKASTNLSTVNLFVMPYNYPALLPLIDDFF---KVHRMKVTPEWRGNFQKYIGTMPSYYA 420
           LK   +   + LF M +        +D  F   K+          G+    +  +  +Y 
Sbjct: 481 LKNIEHPERMTLFRMVF--------LDFRFLEQKIRHDSTAWNASGSILNTLQQL-KFYK 531

Query: 421 AYSSSIHTMPISQMGNYQEYLKRMAAPLREVESTPVRQHMFGNP 464
            Y           +    ++L ++   L   + T + +      
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAE 575

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query573
4fx5_A464 VON willebrand factor type A; structural genomics, 97.98
3ibs_A218 Conserved hypothetical protein BATB; structural ge 97.96
1shu_X182 Anthrax toxin receptor 2; alpha/beta rossmann fold 97.54
3hrz_D741 Complement factor B; serine protease, glycosilated 97.3
1q0p_A223 Complement factor B; VON willebrand factor, MAC-1, 97.3
1n3y_A198 Integrin alpha-X; alpha/beta rossmann fold, cell a 97.19
2odp_A509 Complement C2; C3/C5 convertase, complement serin 97.09
1ijb_A202 VON willebrand factor; dinucleotide-binding fold, 97.01
1rrk_A497 Complement factor B; BB, hydrolase; 2.00A {Homo sa 96.72
3zqk_A199 VON willebrand factor; blood clotting, adamts-13, 96.67
1v7p_C200 Integrin alpha-2; snake venom, C-type lectin, anta 96.64
2b2x_A223 Integrin alpha-1; computational design, antibody-a 96.63
3n2n_F185 Anthrax toxin receptor 1; rossmann fold; 1.80A {Ho 96.6
2x31_A189 Magnesium-chelatase 60 kDa subunit; ligase, bacter 96.56
1mf7_A194 Integrin alpha M; cell adhesion; 1.25A {Homo sapie 96.55
4hqf_A281 Thrombospondin-related anonymous protein, trap; ma 96.16
4hqo_A266 Sporozoite surface protein 2; malaria, gliding mot 95.99
1pt6_A213 Integrin alpha-1; cell adhesion; 1.87A {Homo sapie 95.93
2xgg_A178 Microneme protein 2; A/I domain, cell adhesion, hy 95.52
1mjn_A179 Integrin alpha-L; rossmann fold, immune system; 1. 95.06
3rag_A242 Uncharacterized protein; structural genomics, PSI- 93.6
1atz_A189 VON willebrand factor; collagen-binding, hemostasi 92.93
4b4t_W268 RPN10, 26S proteasome regulatory subunit RPN10; hy 87.62
3k6s_A 1095 Integrin alpha-X; cell receptor, adhesion molecule 85.7
1yvr_A538 RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 82.58
3rag_A242 Uncharacterized protein; structural genomics, PSI- 82.37
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila} Back     alignment and structure
Probab=97.98  E-value=9.5e-06  Score=86.22  Aligned_cols=143  Identities=11%  Similarity=0.105  Sum_probs=101.1

Q ss_pred             hhcccccccccccccc---c----ccchHHHHHHhhccccCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcCCccccC
Q psy11584         10 LSSLFFITHASASYAG---W----KENLTTFMTELKNLQCTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRSPFFLEP   82 (573)
Q Consensus        10 ~~llT~ee~p~~VKaG---W----ken~~~F~~ELKnLqa~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~P~~lEP   82 (573)
                      ++|++|.+....+.-.   +    .++...+.+.|++|++.|-|.++.||..|+++|...              +  -.+
T Consensus       117 v~lV~Fs~~a~~~~p~t~~l~~~~~~~~~~l~~~I~~L~~~GgT~l~~aL~~A~~~l~~~--------------~--~~~  180 (464)
T 4fx5_A          117 FAVVAGTEGARVVYPTGGQLLRADYQSRAAAKEAVGRLHANGGTAMGRWLAQAGRIFDTA--------------P--SAI  180 (464)
T ss_dssp             EEEEEESSSEEEEESSSSSCEECSHHHHHHHHHHHHTCCCCSCCCHHHHHHHHHHHHTTC--------------T--TSE
T ss_pred             EEEEEEcCceEEEecCCcccccCCHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHhcC--------------C--CCC
Confidence            4678998877665321   2    256788999999999999999999999999998641              0  135


Q ss_pred             cEEEEEecCCCccCCCCcccccccCCCCCCCCCCCCCCCccccceeeEEEEeecCCcccCCCchHHHHHhHhCCceEEEc
Q psy11584         83 AVIVVITDGGKLSNATGVQEDFNLPMHSPIPGSEMTREPFRWDQRLFSLVLQRDMGVVACDNSPIDAMCEVTGGRSYCVT  162 (573)
Q Consensus        83 avII~iTDG~~lt~~~Gv~~el~Lp~~s~~pGsELTkEPFRWDQRLFslVL~~~~g~vp~d~spI~amCEvTGGrsy~v~  162 (573)
                      .+||+||||..   ..+....+.--.           +..+=.-++|+|-+..     ..|..-+..|++.|||+.|.+.
T Consensus       181 ~~IILLTDG~~---~~~~~~~l~~~~-----------~a~~~~i~i~tiGiG~-----~~d~~~L~~IA~~tgG~~~~v~  241 (464)
T 4fx5_A          181 KHAILLTDGKD---ESETPADLARAI-----------QSSIGNFTADCRGIGE-----DWEPKELRKIADALLGTVGIIR  241 (464)
T ss_dssp             EEEEEEESSCC---TTSCHHHHHHHH-----------HHHTTTCEEEEEEESS-----SSCHHHHHHHHHHTTCCEEEES
T ss_pred             CEEEEEcCCCC---CCCChHHHHHHH-----------HHhcCCCeEEEEEeCC-----ccCHHHHHHHHHhCCCEEEEcC
Confidence            79999999972   222221111000           0001124678887721     2445779999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcccceEEeee
Q psy11584        163 SHRMLLQCIDSLVQKVQSGVVINFE  187 (573)
Q Consensus       163 S~k~L~qciesLvqkvq~gVVinFe  187 (573)
                      +...|...+..+++++++.++-+.+
T Consensus       242 d~~~L~~~f~~i~~~~~s~~~~dv~  266 (464)
T 4fx5_A          242 DPATLAEDFREMTAKSMGKEVADVA  266 (464)
T ss_dssp             SGGGHHHHHHHHHHHHHTCCEEEEE
T ss_pred             CHHHHHHHHHHHHHHhhchheeeeE
Confidence            9999999999999888877665543
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y* Back     alignment and structure
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* Back     alignment and structure
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1 Back     alignment and structure
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1 Back     alignment and structure
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* Back     alignment and structure
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C Back     alignment and structure
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A Back     alignment and structure
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A* Back     alignment and structure
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A Back     alignment and structure
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1 Back     alignment and structure
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 Back     alignment and structure
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus} Back     alignment and structure
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G Back     alignment and structure
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A Back     alignment and structure
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A* Back     alignment and structure
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A Back     alignment and structure
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii} Back     alignment and structure
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ... Back     alignment and structure
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A Back     alignment and structure
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A* Back     alignment and structure
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A Back     alignment and structure
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query573
d1q0pa_209 Complement factor B domain {Human (Homo sapiens) [ 96.49
d1shux_181 Capillary morphogenesis protein 2 domain {Human (H 93.18
d1mf7a_194 Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha sub 92.72
d1ijba_202 von Willebrand factor A1 domain, vWA1 {Human (Homo 90.23
d1yvra2174 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African c 89.5
d1mjna_179 Integrin CD11a/CD18 (Leukocyte function associated 86.17
d1n3ya_189 Integrin alpha-x beta2 {Human (Homo sapiens) [TaxI 84.71
d1v7pc_193 Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId 84.53
d1atza_184 von Willebrand factor A3 domain, vWA3 {Human (Homo 84.06
>d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Complement factor B domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.0013  Score=58.00  Aligned_cols=151  Identities=12%  Similarity=0.089  Sum_probs=72.8

Q ss_pred             hhcccccccccccc---cccccchHHHHHHhhccc-----cCCCchhHHHHHHHHHHHhhhhcccCCCCCCCCcC-Cccc
Q psy11584         10 LSSLFFITHASASY---AGWKENLTTFMTELKNLQ-----CTGMTLLGAALKHTFDVLNMNRMQSGIDTYGQGRS-PFFL   80 (573)
Q Consensus        10 ~~llT~ee~p~~VK---aGWken~~~F~~ELKnLq-----a~glt~lg~AL~~AFdlLN~nRlqsGID~yG~GR~-P~~l   80 (573)
                      +++++|.+-+..+-   -....+...+.+.|+++.     ..|.|.++.||+.|++.+...+         .|+. ...-
T Consensus        42 v~lv~f~~~~~~~~~l~~~~~~~~~~l~~~i~~i~~~~~~~~g~t~~~~al~~a~~~~~~~~---------~~~~~~~~~  112 (209)
T d1q0pa_          42 YGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPD---------DVPPEGWNR  112 (209)
T ss_dssp             EEEEEESSSEEEEECTTSGGGGCHHHHHHHHHTCCTTSCSCTTCCCHHHHHHHHHHHHCCTT---------SSCCTTGGG
T ss_pred             EEEEEecCceeEEecCccchhhHHHHHHHHHHHhhhccccCCCCchHHHHHHHHHHHHHhhh---------ccCccccCC
Confidence            56788876554331   122234556677888875     6789999999999999884221         1111 1111


Q ss_pred             cCcEEEEEecCCCccCCC--CcccccccCCCCCCCCCCCCCCCccc-cceeeEEEEeecCCcccCCCchHHHHHhHhCCc
Q psy11584         81 EPAVIVVITDGGKLSNAT--GVQEDFNLPMHSPIPGSEMTREPFRW-DQRLFSLVLQRDMGVVACDNSPIDAMCEVTGGR  157 (573)
Q Consensus        81 EPavII~iTDG~~lt~~~--Gv~~el~Lp~~s~~pGsELTkEPFRW-DQRLFslVL~~~~g~vp~d~spI~amCEvTGGr  157 (573)
                      -+-+||++|||..-.+.+  .+.++..-.........+     -|. .-++|++.+..     ..+...+..|+..+||.
T Consensus       113 ~~kvvvl~TDG~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~gi~i~~vgvg~-----~~~~~~L~~iAs~~~~~  182 (209)
T d1q0pa_         113 TRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKN-----PREDYLDVYVFGVGP-----LVNQVNINALASKKDNE  182 (209)
T ss_dssp             CEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSCBTTB-----CCGGGEEEEEEECSS-----CCCHHHHHHHSCCCTTC
T ss_pred             CceEEEEEcCCCccCCCChHHHHHHHHHhhhhHHHHHH-----HHhcCCceEEecCCc-----cCCHHHHHHHHcCCCCC
Confidence            234899999997322111  011111100000000111     111 13466665521     23456788998888876


Q ss_pred             --eEEEcCHHHHHHHHHHHHHhcc
Q psy11584        158 --SYCVTSHRMLLQCIDSLVQKVQ  179 (573)
Q Consensus       158 --sy~v~S~k~L~qciesLvqkvq  179 (573)
                        .|.+.+...|.+.++.|++..+
T Consensus       183 ~~~f~~~~~~~L~~~~~~ii~~~~  206 (209)
T d1q0pa_         183 QHVFKVKDMENLEDVFYQMIDESQ  206 (209)
T ss_dssp             CCEEETTC----------------
T ss_pred             eeEEEeCCHHHHHHHHHHHHHhhc
Confidence              6788899999999999887544
>d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure