Diaphorina citri psyllid: psy1165


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-
MMETIGQQPAYNPHLKKVLKTYQLSAVKSLQGPSTVLRTEGVVTVTLVPKKEPADSAEPSPEPYITPPPPPIQQLPILTTSDQSRSELSETLLEGETISCFVVGGEKRLCLPQILNSVLRDFSLPQINQVCDDLQIFCSRCNPEQLEILKLSGILPLTAASCGLMTKTDAERLCSTLLHQRPGPTPRHIDKIVTFSFKVYHECFGKCKGVCMPELFTDGESRCIQCLECHGFFSPQKFVCHVHLSSENRTCHWGFESVKWRSYLLAVEEQQNYDQCLKILQIFKEQHIETTTSGKRKQTHRLPCNPEQLEILKLSGILPLTAASCGLMTKTDAERLCSTLLHQRPGPTPRHIDKIVTFSFKVYHECFGKCKGVCMPELFTDGESRCIQCLECHGFFSPQKFVCHVHLSSENRTCHWGFESVKWRSYLLAVEEQQNYDQCLKILQIFKEQHIETTTSGKRKQ
cccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccEEEEEEEEccCEEccHHHHHHHHHHcccHHHHHHHHcccEEEEEcccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccCEEEccccccccccccEEccccccccccccEEEEcccccccccccccccccccHHccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHcccccccccccccccccccEEEEEEEccCEEEEECcccccccccccEEccccccccccccEEEEccccccccccccccccccccccEEcccccccHHHHHHHHHHHHHHHHHHcccccccc
**************LKKVLKTYQLSA***LQGP*****************************************************ELSETLLEGETISCFVVGGEKRLCLPQILNSVLRDFSLPQINQVCDDLQIFCSRCNPEQLEILKLSGILPLTAASCGLMTKTDAERLCSTLLHQRPGPTPRHIDKIVTFSFKVYHECFGKCKGVCMPELFTDGESRCIQCLECHGFFSPQKFVCHVHLSSENRTCHWGFESVKWRSYLLAVEEQQNYDQCLKILQIFKEQHIET***********LPCNPEQLEILKLSGILPLTAASCGLMTKTDAERLCSTLLHQRPGPTPRHIDKIVTFSFKVYHECFGKCKGVCMPELFTDGESRCIQCLECHGFFSPQKFVCHVHLSSENRTCHWGFESVKWRSYLLAVEEQQNYDQCLKILQIFKEQHIE**T******
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MMETIGQQPAYNPHLKKVLKTYQLSAVKSLQGPSTVLRTEGVVTVTLVPKKEPADSAEPSPEPYITPPPPPIQQLPILTTSDQSRSELSETLLEGETISCFVVGGEKRLCLPQILNSVLRDFSLPQINQVCDDLQIFCSRCNPEQLEILKLSGILPLTAASCGLMTKTDAERLCSTLLHQRPGPTPRHIDKIVTFSFKVYHECFGKCKGVCMPELFTDGESRCIQCLECHGFFSPQKFVCHVHLSSENRTCHWGFESVKWRSYLLAVEEQQNYDQCLKILQIFKEQHIETTTSGKRKQTHRLPCNPEQLEILKLSGILPLTAASCGLMTKTDAERLCSTLLHQRPGPTPRHIDKIVTFSFKVYHECFGKCKGVCMPELFTDGESRCIQCLECHGFFSPQKFVCHVHLSSENRTCHWGFESVKWRSYLLAVEEQQNYDQCLKILQIFKEQHIETTTSGKRKQ

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Ski oncogene May play a role in terminal differentiation of skeletal muscle cells but not in the determination of cells to the myogenic lineage. Functions as a repressor of TGF-beta signaling.confidentQ60698

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0016605 [CC]PML bodyprobableGO:0044446, GO:0016604, GO:0043231, GO:0031981, GO:0043233, GO:0005634, GO:0044464, GO:0005623, GO:0005622, GO:0005654, GO:0070013, GO:0043229, GO:0044428, GO:0031974, GO:0005575, GO:0044424, GO:0044451, GO:0043227, GO:0043226, GO:0044422
GO:0070207 [BP]protein homotrimerizationprobableGO:0051259, GO:0022607, GO:0070206, GO:0071822, GO:0070271, GO:0043933, GO:0006461, GO:0051260, GO:0016043, GO:0065003, GO:0044085, GO:0008150, GO:0071840
GO:0070208 [BP]protein heterotrimerizationprobableGO:0051259, GO:0022607, GO:0070206, GO:0071822, GO:0070271, GO:0043933, GO:0006461, GO:0051291, GO:0016043, GO:0065003, GO:0044085, GO:0008150, GO:0071840
GO:0070848 [BP]response to growth factor stimulusprobableGO:0042221, GO:0050896, GO:0008150, GO:0010033
GO:0032403 [MF]protein complex bindingprobableGO:0003674, GO:0005488, GO:0005515
GO:0070306 [BP]lens fiber cell differentiationprobableGO:0032502, GO:0030154, GO:0044707, GO:0007423, GO:0048869, GO:0032501, GO:0060429, GO:0009888, GO:0048731, GO:0044767, GO:0048513, GO:0001654, GO:0008150, GO:0030855, GO:0002088, GO:0044763, GO:0009987, GO:0043010, GO:0007275, GO:0044699, GO:0048856
GO:0003677 [MF]DNA bindingprobableGO:0097159, GO:0003674, GO:1901363, GO:0003676, GO:0005488
GO:0005737 [CC]cytoplasmprobableGO:0044424, GO:0005575, GO:0044464, GO:0005623, GO:0005622
GO:0003714 [MF]transcription corepressor activityprobableGO:0003674, GO:0003712, GO:0000989, GO:0000988
GO:0007519 [BP]skeletal muscle tissue developmentprobableGO:0032502, GO:0007517, GO:0032501, GO:0044707, GO:0048856, GO:0009888, GO:0044767, GO:0061061, GO:0014706, GO:0048513, GO:0008150, GO:0060537, GO:0060538, GO:0048731, GO:0007275, GO:0044699
GO:0009653 [BP]anatomical structure morphogenesisprobableGO:0032502, GO:0048856, GO:0008150
GO:0045596 [BP]negative regulation of cell differentiationprobableGO:0051093, GO:0050793, GO:0050794, GO:0008150, GO:0045595, GO:0065007, GO:0048519, GO:0050789, GO:0048523
GO:0003682 [MF]chromatin bindingprobableGO:0003674, GO:0005488
GO:0009790 [BP]embryo developmentprobableGO:0032502, GO:0032501, GO:0044707, GO:0048856, GO:0044767, GO:0008150, GO:0007275, GO:0044699

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 3EQ5, chain A
Confidence level:very confident
Coverage over the Query: 79-180
View the alignment between query and template
View the model in PyMOL
Template: 1MR1, chain C
Confidence level:very confident
Coverage over the Query: 195-288
View the alignment between query and template
View the model in PyMOL
Template: 1MR1, chain C
Confidence level:very confident
Coverage over the Query: 358-449
View the alignment between query and template
View the model in PyMOL
Template: 3EQ5, chain A
Confidence level:very confident
Coverage over the Query: 294-343
View the alignment between query and template
View the model in PyMOL