Psyllid ID: psy1165

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-
MMETIGQQPAYNPHLKKVLKTYQLSAVKSLQGPSTVLRTEGVVTVTLVPKKEPADSAEPSPEPYITPPPPPIQQLPILTTSDQSRSELSETLLEGETISCFVVGGEKRLCLPQILNSVLRDFSLPQINQVCDDLQIFCSRCNPEQLEILKLSGILPLTAASCGLMTKTDAERLCSTLLHQRPGPTPRHIDKIVTFSFKVYHECFGKCKGVCMPELFTDGESRCIQCLECHGFFSPQKFVCHVHLSSENRTCHWGFESVKWRSYLLAVEEQQNYDQCLKILQIFKEQHIETTTSGKRKQTHRLPCNPEQLEILKLSGILPLTAASCGLMTKTDAERLCSTLLHQRPGPTPRHIDKIVTFSFKVYHECFGKCKGVCMPELFTDGESRCIQCLECHGFFSPQKFVCHVHLSSENRTCHWGFESVKWRSYLLAVEEQQNYDQCLKILQIFKEQHIETTTSGKRKQ
cccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccEEEEEEEEccEEEccHHHHHHHHHHcccHHHHHHHHcccEEEEEcccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccEEEEccccccccccccEEccccccccccccEEEEcccccccccccccccccccHHccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHcccccccccccccccccccEEEEEEEccEEEEEEEcccccccccccEEccccccccccccEEEEccccccccccccccccccccccEEcccccccHHHHHHHHHHHHHHHHHHcccccccc
cccccccccccccHHHHHHHHHccccHHHccccHHHHccccHHHHcccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEEcccHHccHHHHHHHHHHHccHHHHHHHHHHcEEEEEcccHHHHHHHHHHccccccccccccEcHHHHHHHHHHHHccccccccccHHHHHcccEEEEEEccccccccEccHHcccccccEEEEEccccccccccEEEEccccccccccccccccccHHHHEEcccccccHHHHHHHHHHHHHHHHHccccccEEEEccccccHHHHHHHHHcccccccccccccEcHHHHHHHHHHHHccccccccccHHHHcccEEEEEEEccccccccEccHHcccccccEEEEEccccccccccEEEEccccccccccccccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccc
mmetigqqpaynphlKKVLKTYQLSAVkslqgpstvlrtEGVVTVTlvpkkepadsaepspepyitpppppiqqlpilttsdqSRSELSETLLegetiscfvvggekrlclPQILNSVlrdfslpqiNQVCDDLQIFCSRCNPEQLEILKlsgilpltaascglmtKTDAERLCSTllhqrpgptprhidkIVTFSFKVYHECfgkckgvcmpelftdgesrciqclechgffspqkfvchvhlssenrtchwgfesvKWRSYLLAVEEQQNYDQCLKILQIFKEQHietttsgkrkqthrlpcnpeQLEILklsgilpltaascglmtKTDAERLCSTllhqrpgptprhidkIVTFSFKVYHECfgkckgvcmpelftdgesrciqclechgffspqkfvchvhlssenrtchwgfesvKWRSYLLAVEEQQNYDQCLKILQIFKEQHietttsgkrkq
mmetigqqpaynphLKKVLKTYQLSAVKslqgpstvlrtegVVTVTlvpkkepadsaepspePYITPPPPPIQQLPILTTSDQSRSELSETLLEGETISCFVVGGEKRLCLPQILNSVLRDFSLPQINQVCDDLQIFCSRCNPEQLEILKLSGILPLTAASCGLMTKTDAERLCSTLlhqrpgptprhIDKIVTFSFKVYHECFGKCKGVCMPELFTDGESRCIQCLECHGFFSPQKFVCHVHLSSENRTCHWGFESVKWRSYLLAVEEQQNYDQCLKILQIFKEQHIEtttsgkrkqthrlPCNPEQLEILKLSGILPLTAASCGLMTKTDAERLCSTLlhqrpgptprhIDKIVTFSFKVYHECFGKCKGVCMPELFTDGESRCIQCLECHGFFSPQKFVCHVHLSSENRTCHWGFESVKWRSYLLAVEEQQNYDQCLKILQIFKeqhietttsgkrkq
MMETIGQQPAYNPHLKKVLKTYQLSAVKSLQGPSTVLRTEGVVTVTLVPKKepadsaepspepyitpppppiqqlpilttSDQsrselsetlleGETISCFVVGGEKRLCLPQILNSVLRDFSLPQINQVCDDLQIFCSRCNPEQLEILKLSGILPLTAASCGLMTKTDAERLCSTLLHQRPGPTPRHIDKIVTFSFKVYHECFGKCKGVCMPELFTDGESRCIQCLECHGFFSPQKFVCHVHLSSENRTCHWGFESVKWRSYLLAVEEQQNYDQCLKILQIFKEQHIETTTSGKRKQTHRLPCNPEQLEILKLSGILPLTAASCGLMTKTDAERLCSTLLHQRPGPTPRHIDKIVTFSFKVYHECFGKCKGVCMPELFTDGESRCIQCLECHGFFSPQKFVCHVHLSSENRTCHWGFESVKWRSYLLAVEEQQNYDQCLKILQIFKEQHIETTTSGKRKQ
**************LKKVLKTYQLSAVKSLQGPSTVLRTEGVVTVTLV*******************************************LLEGETISCFVVGGEKRLCLPQILNSVLRDFSLPQINQVCDDLQIFCSRCNPEQLEILKLSGILPLTAASCGLMTKTDAERLCSTLLHQRPGPTPRHIDKIVTFSFKVYHECFGKCKGVCMPELFTDGESRCIQCLECHGFFSPQKFVCHVHLSSENRTCHWGFESVKWRSYLLAVEEQQNYDQCLKILQIFKEQHIE************LPCNPEQLEILKLSGILPLTAASCGLMTKTDAERLCSTLLHQRPGPTPRHIDKIVTFSFKVYHECFGKCKGVCMPELFTDGESRCIQCLECHGFFSPQKFVCHVHLSSENRTCHWGFESVKWRSYLLAVEEQQNYDQCLKILQIFKEQH***********
**************************************************************************************ELSETLLEGETISCFVVGGEKRLCLPQILNSVLRDFSLPQINQVCDDLQIFCSRCNPEQLEILKLSGILPLTAASCGLMTKTDAERLCSTL*******************FKVYHECFGKCKGVCMPELFTDGESRCIQCLECHGFFSPQKFVCHVHLSSENRTCHWGFESVKWRSYLLAVEE****DQCLKILQIFKEQHIET****************************PLTAASCGLMTKTDAERLCSTLL****************FSFKVYHECFGKCKGVCMPELFTDGESRCIQCLECHGFFSPQKFVCHVHLSSENRTCHWGFESVKWRSYLLAVEE*Q**DQCLKILQIFKEQHIE**T******
MMETIGQQPAYNPHLKKVLKTYQLSAVKSLQGPSTVLRTEGVVTVTLVPKK***********PYITPPPPPIQQLPILTTSDQSRSELSETLLEGETISCFVVGGEKRLCLPQILNSVLRDFSLPQINQVCDDLQIFCSRCNPEQLEILKLSGILPLTAASCGLMTKTDAERLCSTLLHQRPGPTPRHIDKIVTFSFKVYHECFGKCKGVCMPELFTDGESRCIQCLECHGFFSPQKFVCHVHLSSENRTCHWGFESVKWRSYLLAVEEQQNYDQCLKILQIFKEQHIE************LPCNPEQLEILKLSGILPLTAASCGLMTKTDAERLCSTLLHQRPGPTPRHIDKIVTFSFKVYHECFGKCKGVCMPELFTDGESRCIQCLECHGFFSPQKFVCHVHLSSENRTCHWGFESVKWRSYLLAVEEQQNYDQCLKILQIFKEQHI**********
*********AYNPHLKKVLKTYQLSA***LQGP*****************************PYITPPPPPIQQLPILTTSDQSRSELSETLLEGETISCFVVGGEKRLCLPQILNSVLRDFSLPQINQVCDDLQIFCSRCNPEQLEILKLSGILPLTAASCGLMTKTDAERLCSTLLHQRPGPTPRHIDKIVTFSFKVYHECFGKCKGVCMPELFTDGESRCIQCLECHGFFSPQKFVCHVHLSSENRTCHWGFESVKWRSYLLAVEEQQNYDQCLKILQIFKEQHIETTTSGKRKQTHRLPCNPEQLEILKLSGILPLTAASCGLMTKTDAERLCSTLLHQRPGPTPRHIDKIVTFSFKVYHECFGKCKGVCMPELFTDGESRCIQCLECHGFFSPQKFVCHVHLSSENRTCHWGFESVKWRSYLLAVEEQQNYDQCLKILQIFKEQHIETTT******
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MMETIGQQPAYNPHLKKVLKTYQLSAVKSLQGPSTVLRTEGVVTVTLVPKKEPADSAEPSPEPYITPPPPPIQQLPILTTSDQSRSELSETLLEGETISCFVVGGEKRLCLPQILNSVLRDFSLPQINQVCDDLQIFCSRCNPEQLEILKLSGILPLTAASCGLMTKTDAERLCSTLLHQRPGPTPRHIDKIVTFSFKVYHECFGKCKGVCMPELFTDGESRCIQCLECHGFFSPQKFVCHVHLSSENRTCHWGFESVKWRSYLLAVEEQQNYDQCLKILQIFKEQHIETTTSGKRKQTHRLPCNPEQLEILKLSGILPLTAASCGLMTKTDAERLCSTLLHQRPGPTPRHIDKIVTFSFKVYHECFGKCKGVCMPELFTDGESRCIQCLECHGFFSPQKFVCHVHLSSENRTCHWGFESVKWRSYLLAVEEQQNYDQCLKILQIFKEQHIETTTSGKRKQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query461 2.2.26 [Sep-21-2011]
Q60698 725 Ski oncogene OS=Mus muscu yes N/A 0.570 0.362 0.501 2e-72
Q02225 717 Ski oncogene OS=Xenopus l N/A N/A 0.629 0.404 0.484 6e-72
P49140 750 Ski oncogene OS=Gallus ga yes N/A 0.642 0.394 0.488 6e-72
P12755 728 Ski oncogene OS=Homo sapi yes N/A 0.596 0.377 0.486 4e-69
P17863437 Transforming protein Ski N/A N/A 0.477 0.503 0.560 2e-68
Q9TUG2 730 Ski oncogene OS=Equus cab yes N/A 0.590 0.372 0.475 2e-65
Q5R431 684 Ski-like protein OS=Pongo yes N/A 0.581 0.391 0.465 1e-63
P12757 684 Ski-like protein OS=Homo no N/A 0.581 0.391 0.462 2e-63
Q60665 675 Ski-like protein OS=Mus m no N/A 0.516 0.352 0.496 2e-63
A7M7C7 1008 SKI family transcriptiona no N/A 0.375 0.171 0.359 5e-28
>sp|Q60698|SKI_MOUSE Ski oncogene OS=Mus musculus GN=Ski PE=2 SV=2 Back     alignment and function desciption
 Score =  273 bits (697), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 147/293 (50%), Positives = 183/293 (62%), Gaps = 30/293 (10%)

Query: 12  NPHLKKVLKTYQLSAVKSLQGPSTVLRTEGVVTVTLVPKKEPADSAEPSPEPYITPPPPP 71
            P L+K L+ + LS++ SL GP+ V R  G         KE   +  P+P P    PPP 
Sbjct: 13  QPGLQKTLEQFHLSSMSSLGGPA-VSRRAGQEAYKKESAKEAGAATVPAPVPTAAEPPP- 70

Query: 72  IQQLPILTT------------SDQSRSELSETLLEGETISCFVVGGEKRLCLPQILNSVL 119
           +  LP +              SD+S +E  ET+LEGETISCFVVGGEKRLCLPQILNSVL
Sbjct: 71  VLHLPAIQPPPPVLPGPFFMPSDRS-TERCETVLEGETISCFVVGGEKRLCLPQILNSVL 129

Query: 120 RDFSLPQINQVCDDLQIFCSRCNPEQLEILKLSGILPLTAASCGLMTKTDAERLCSTLLH 179
           RDFSL QIN VCD+L I+CSRC  +QLEILK+ GILP +A SCGL+TKTDAERLC+ LL+
Sbjct: 130 RDFSLQQINSVCDELHIYCSRCTADQLEILKVMGILPFSAPSCGLITKTDAERLCNALLY 189

Query: 180 QRPGPTPRHIDKIVTF---------SFKVYHECFGKCKGVCMPELFTDGESRCIQCLECH 230
               P P   +   +          S +VYHECFGKCKG+ +PEL++   + CIQCL+C 
Sbjct: 190 GGAYPPPCKKELAASLALGLELSERSVRVYHECFGKCKGLLVPELYSSPSAACIQCLDCR 249

Query: 231 GFFSPQKFVCHVHLSSENRTCHWGFESVKWRSYLL------AVEEQQNYDQCL 277
             + P KFV H H + ENRTCHWGF+S  WR+Y+L        EEQ    +CL
Sbjct: 250 LMYPPHKFVVHSHKALENRTCHWGFDSANWRAYILLSQDYTGKEEQARLGRCL 302
May play a role in terminal differentiation of skeletal muscle cells but not in the determination of cells to the myogenic lineage. Functions as a repressor of TGF-beta signaling.
Mus musculus (taxid: 10090)
>sp|Q02225|SKI_XENLA Ski oncogene OS=Xenopus laevis GN=ski PE=2 SV=1 Back     alignment and function description
>sp|P49140|SKI_CHICK Ski oncogene OS=Gallus gallus GN=SKI PE=3 SV=1 Back     alignment and function description
>sp|P12755|SKI_HUMAN Ski oncogene OS=Homo sapiens GN=SKI PE=1 SV=1 Back     alignment and function description
>sp|P17863|SKI_AVIES Transforming protein Ski OS=Avian erythroblastosis virus (strain Sloan-Kettering) GN=V-SKI PE=3 SV=1 Back     alignment and function description
>sp|Q9TUG2|SKI_HORSE Ski oncogene OS=Equus caballus GN=SKI PE=2 SV=1 Back     alignment and function description
>sp|Q5R431|SKIL_PONAB Ski-like protein OS=Pongo abelii GN=SKIL PE=2 SV=1 Back     alignment and function description
>sp|P12757|SKIL_HUMAN Ski-like protein OS=Homo sapiens GN=SKIL PE=1 SV=2 Back     alignment and function description
>sp|Q60665|SKIL_MOUSE Ski-like protein OS=Mus musculus GN=Skil PE=2 SV=2 Back     alignment and function description
>sp|A7M7C7|SKOR2_MOUSE SKI family transcriptional corepressor 2 OS=Mus musculus GN=Skor2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query461
242022071310 transforming protein Ski, putative [Pedi 0.581 0.864 0.613 1e-89
270011987302 hypothetical protein TcasGA2_TC006082 [T 0.605 0.923 0.565 3e-81
189239770419 PREDICTED: similar to nuclear oncoprotei 0.555 0.610 0.592 9e-81
260784674297 hypothetical protein BRAFLDRAFT_231363 [ 0.557 0.865 0.568 3e-78
291239010307 PREDICTED: v-ski sarcoma viral oncogene 0.572 0.859 0.569 1e-77
383849240 707 PREDICTED: uncharacterized protein LOC10 0.622 0.405 0.477 1e-75
390341046 732 PREDICTED: ski oncogene-like [Strongyloc 0.618 0.389 0.470 1e-75
350426217 705 PREDICTED: hypothetical protein LOC10074 0.629 0.411 0.468 6e-75
340721788 705 PREDICTED: hypothetical protein LOC10064 0.629 0.411 0.468 1e-74
443717206 753 hypothetical protein CAPTEDRAFT_227701 [ 0.594 0.363 0.512 2e-74
>gi|242022071|ref|XP_002431465.1| transforming protein Ski, putative [Pediculus humanus corporis] gi|212516753|gb|EEB18727.1| transforming protein Ski, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 181/295 (61%), Positives = 208/295 (70%), Gaps = 27/295 (9%)

Query: 2   METIGQQPAYNPHLKKVLKTYQLSAVKSLQGPSTVLRTEGVVTVTLVPKKEPADS-AEPS 60
           MET+ Q   Y PHLKKVLK YQLSAVKSLQGPST+L     V   +  K E A S A  S
Sbjct: 1   METLVQ--PYTPHLKKVLKKYQLSAVKSLQGPSTLLGPCLEVATPVPSKTEDAPSTARES 58

Query: 61  PEPY-------------ITPPPPPIQQLPILTTSDQSRSELSETLLEGETISCFVVGGEK 107
           P                  PPP P+QQLPILT +DQ RSE  ET LEGE+ISCFVVGGEK
Sbjct: 59  PTTVSRTVRSPAADIDNFIPPPFPVQQLPILTEADQ-RSERGETELEGESISCFVVGGEK 117

Query: 108 RLCLPQILNSVLRDFSLPQINQVCDDLQIFCSRCNPEQLEILKLSGILPLTAASCGLMTK 167
           RLCLPQ+LNSVL++F+L QINQVCDDLQIFCSRCNPEQLE+LK++GILP +A SCGL+TK
Sbjct: 118 RLCLPQVLNSVLQNFTLAQINQVCDDLQIFCSRCNPEQLEVLKVTGILPASAPSCGLITK 177

Query: 168 TDAERLCSTLL-HQRPG---PTPRHIDKIVTFSFKVYHECFGKCKGVCMPELFTDGESRC 223
           TDAERLCS LL H  P    P+P  +      SF+VYHECFGKC+G+C P L++   SRC
Sbjct: 178 TDAERLCSALLQHGVPATSLPSPGAV------SFQVYHECFGKCRGLCTPSLYSTPNSRC 231

Query: 224 IQCLECHGFFSPQKFVCHVHLSSENRTCHWGFESVKWRSYLLAVEEQQNYDQCLK 278
           I+C ECH  FSPQ FVCH H   +NRTCHWGF+S  WRSYLL    Q +YD  +K
Sbjct: 232 IECFECHAMFSPQHFVCHAHRPLQNRTCHWGFDSSNWRSYLLVARGQPDYDVAVK 286

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|270011987|gb|EFA08435.1| hypothetical protein TcasGA2_TC006082 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|189239770|ref|XP_966566.2| PREDICTED: similar to nuclear oncoprotein skia [Tribolium castaneum] Back     alignment and taxonomy information
>gi|260784674|ref|XP_002587390.1| hypothetical protein BRAFLDRAFT_231363 [Branchiostoma floridae] gi|229272535|gb|EEN43401.1| hypothetical protein BRAFLDRAFT_231363 [Branchiostoma floridae] Back     alignment and taxonomy information
>gi|291239010|ref|XP_002739418.1| PREDICTED: v-ski sarcoma viral oncogene homolog, partial [Saccoglossus kowalevskii] Back     alignment and taxonomy information
>gi|383849240|ref|XP_003700253.1| PREDICTED: uncharacterized protein LOC100875365 [Megachile rotundata] Back     alignment and taxonomy information
>gi|390341046|ref|XP_797484.3| PREDICTED: ski oncogene-like [Strongylocentrotus purpuratus] Back     alignment and taxonomy information
>gi|350426217|ref|XP_003494369.1| PREDICTED: hypothetical protein LOC100741838 [Bombus impatiens] Back     alignment and taxonomy information
>gi|340721788|ref|XP_003399296.1| PREDICTED: hypothetical protein LOC100642736 [Bombus terrestris] Back     alignment and taxonomy information
>gi|443717206|gb|ELU08400.1| hypothetical protein CAPTEDRAFT_227701 [Capitella teleta] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query461
UNIPROTKB|E1C0R3 712 E1C0R3 "Uncharacterized protei 0.494 0.320 0.529 2.3e-71
UNIPROTKB|E1BSJ7 712 E1BSJ7 "Uncharacterized protei 0.494 0.320 0.525 2.9e-71
UNIPROTKB|P49140 750 SKI "Ski oncogene" [Gallus gal 0.453 0.278 0.558 2e-70
ZFIN|ZDB-GENE-990715-9 727 skia "nuclear oncoprotein skia 0.436 0.276 0.546 6.5e-68
ZFIN|ZDB-GENE-990715-10 695 skib "nuclear oncoprotein skib 0.442 0.293 0.553 3.7e-64
UNIPROTKB|P12755 728 SKI "Ski oncogene" [Homo sapie 0.396 0.251 0.585 3.3e-63
UNIPROTKB|F1Q1E2 731 SKI "Uncharacterized protein" 0.396 0.250 0.585 6.9e-63
UNIPROTKB|J9P7I7 731 SKI "Uncharacterized protein" 0.396 0.250 0.585 6.9e-63
MGI|MGI:98310 725 Ski "ski sarcoma viral oncogen 0.396 0.252 0.585 6.9e-63
UNIPROTKB|Q9TUG2 730 SKI "Ski oncogene" [Equus caba 0.396 0.250 0.580 8.8e-63
UNIPROTKB|E1C0R3 E1C0R3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 644 (231.8 bits), Expect = 2.3e-71, Sum P(3) = 2.3e-71
 Identities = 127/240 (52%), Positives = 161/240 (67%)

Query:    95 GETISCFVVGGEKRLCLPQILNSVLRDFSLPQINQVCDDLQIFCSRCNPEQLEILKLSGI 154
             GETISCFVVGGEKRLCLPQILNSVLRDFSL QIN VCD+L I+CSRC  +QLEILK+ GI
Sbjct:    90 GETISCFVVGGEKRLCLPQILNSVLRDFSLQQINSVCDELHIYCSRCTADQLEILKVMGI 149

Query:   155 LPLTAASCGLMTKTDAERLCSTLLHQRPGPTPRHIDK---------IVTFSFKVYHECFG 205
             LP +A SCGL+TKTDAERLC+ LL+   G  P H  K         +   SFKVYHECFG
Sbjct:   150 LPFSAPSCGLITKTDAERLCNALLYG--GTYPPHCKKEFSSTIELELTEKSFKVYHECFG 207

Query:   206 KCKGVCMPELFTDGESRCIQCLECHGFFSPQKFVCHVHLSSENRTCHWGFESVKWRSYLL 265
             KCKG+ +PEL+++  + CIQCL+C   + P KFV H H S ENRTCHWGF+S  WRSY+L
Sbjct:   208 KCKGLLVPELYSNPSAACIQCLDCRLMYPPHKFVVHSHKSLENRTCHWGFDSANWRSYIL 267

Query:   266 AVEEQQNYDQCLKILQIFKEQHIETTTSGK-RKQTHRLPCNPEQLEILKLSGILPLTAAS 324
               ++    ++  ++ Q+  E   +   + K +++  RL  NP   +  K+      + AS
Sbjct:   268 LSQDYTGKEEKARLGQLLDEMKEKFDYNNKYKRKAPRLSANPPASKKTKIDDSASQSPAS 327
GO:0000166 "nucleotide binding" evidence=IEA
GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA
GO:0001843 "neural tube closure" evidence=IEA
GO:0002089 "lens morphogenesis in camera-type eye" evidence=IEA
GO:0003682 "chromatin binding" evidence=IEA
GO:0003714 "transcription corepressor activity" evidence=IEA
GO:0005667 "transcription factor complex" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0009948 "anterior/posterior axis specification" evidence=IEA
GO:0010626 "negative regulation of Schwann cell proliferation" evidence=IEA
GO:0014902 "myotube differentiation" evidence=IEA
GO:0016605 "PML body" evidence=IEA
GO:0017053 "transcriptional repressor complex" evidence=IEA
GO:0019901 "protein kinase binding" evidence=IEA
GO:0019904 "protein domain specific binding" evidence=IEA
GO:0021772 "olfactory bulb development" evidence=IEA
GO:0022011 "myelination in peripheral nervous system" evidence=IEA
GO:0030326 "embryonic limb morphogenesis" evidence=IEA
GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA
GO:0030514 "negative regulation of BMP signaling pathway" evidence=IEA
GO:0031625 "ubiquitin protein ligase binding" evidence=IEA
GO:0032926 "negative regulation of activin receptor signaling pathway" evidence=IEA
GO:0035019 "somatic stem cell maintenance" evidence=IEA
GO:0042981 "regulation of apoptotic process" evidence=IEA
GO:0043388 "positive regulation of DNA binding" evidence=IEA
GO:0043585 "nose morphogenesis" evidence=IEA
GO:0045668 "negative regulation of osteoblast differentiation" evidence=IEA
GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA
GO:0046332 "SMAD binding" evidence=IEA
GO:0046811 "histone deacetylase inhibitor activity" evidence=IEA
GO:0048147 "negative regulation of fibroblast proliferation" evidence=IEA
GO:0048741 "skeletal muscle fiber development" evidence=IEA
GO:0060021 "palate development" evidence=IEA
GO:0060041 "retina development in camera-type eye" evidence=IEA
GO:0060325 "face morphogenesis" evidence=IEA
GO:0060349 "bone morphogenesis" evidence=IEA
GO:0060395 "SMAD protein signal transduction" evidence=IEA
GO:0070207 "protein homotrimerization" evidence=IEA
GO:0070491 "repressing transcription factor binding" evidence=IEA
UNIPROTKB|E1BSJ7 E1BSJ7 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P49140 SKI "Ski oncogene" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-990715-9 skia "nuclear oncoprotein skia" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-990715-10 skib "nuclear oncoprotein skib" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P12755 SKI "Ski oncogene" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q1E2 SKI "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9P7I7 SKI "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:98310 Ski "ski sarcoma viral oncogene homolog (avian)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q9TUG2 SKI "Ski oncogene" [Equus caballus (taxid:9796)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q60698SKI_MOUSENo assigned EC number0.50170.57040.3627yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query461
pfam02437101 pfam02437, Ski_Sno, SKI/SNO/DAC family 5e-41
smart0104695 smart01046, c-SKI_SMAD_bind, c-SKI Smad4 binding d 3e-34
smart0104695 smart01046, c-SKI_SMAD_bind, c-SKI Smad4 binding d 3e-34
pfam0878295 pfam08782, c-SKI_SMAD_bind, c-SKI Smad4 binding do 2e-33
pfam0878295 pfam08782, c-SKI_SMAD_bind, c-SKI Smad4 binding do 2e-33
pfam02437101 pfam02437, Ski_Sno, SKI/SNO/DAC family 3e-11
>gnl|CDD|145533 pfam02437, Ski_Sno, SKI/SNO/DAC family Back     alignment and domain information 
 Score =  141 bits (357), Expect = 5e-41
 Identities = 55/101 (54%), Positives = 69/101 (68%)

Query: 80  TSDQSRSELSETLLEGETISCFVVGGEKRLCLPQILNSVLRDFSLPQINQVCDDLQIFCS 139
           TSD S +E  + +LEGE I+CF+VGGE+RLCLPQI N  L+ FSL QIN     L I+C 
Sbjct: 1   TSDPSSNECRQVVLEGEKIACFLVGGEERLCLPQIFNLFLKHFSLHQINTKLKRLDIYCV 60

Query: 140 RCNPEQLEILKLSGILPLTAASCGLMTKTDAERLCSTLLHQ 180
            C  EQL IL+  G +P     CGL+T+TDAERLC+ LL+ 
Sbjct: 61  VCTVEQLRILRGLGAIPPGVNRCGLITRTDAERLCNDLLNA 101

This family contains a presumed domain that is about 100 amino acids long. All members of this family contain a conserved CLPQ motif. The c-ski proto-oncogene has been shown to influence proliferation, morphological transformation and myogenic differentiation. Sno, a Ski proto-oncogene homologue, is expressed in two isoforms and plays a role in the response to proliferation stimuli. Dachshund also contains this domain. It is involved in various aspects of development. Length = 101
>gnl|CDD|198114 smart01046, c-SKI_SMAD_bind, c-SKI Smad4 binding domain Back     alignment and domain information
>gnl|CDD|198114 smart01046, c-SKI_SMAD_bind, c-SKI Smad4 binding domain Back     alignment and domain information
>gnl|CDD|192152 pfam08782, c-SKI_SMAD_bind, c-SKI Smad4 binding domain Back     alignment and domain information
>gnl|CDD|192152 pfam08782, c-SKI_SMAD_bind, c-SKI Smad4 binding domain Back     alignment and domain information
>gnl|CDD|145533 pfam02437, Ski_Sno, SKI/SNO/DAC family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 461
PF0878296 c-SKI_SMAD_bind: c-SKI Smad4 binding domain; Inter 100.0
PF02437114 Ski_Sno: SKI/SNO/DAC family; InterPro: IPR003380 T 100.0
PF0878296 c-SKI_SMAD_bind: c-SKI Smad4 binding domain; Inter 100.0
KOG3915|consensus641 99.92
PF02437114 Ski_Sno: SKI/SNO/DAC family; InterPro: IPR003380 T 99.24
PF0134282 SAND: SAND domain; InterPro: IPR000770 The SAND do 93.46
smart0025873 SAND SAND domain. 90.8
PF0134282 SAND: SAND domain; InterPro: IPR000770 The SAND do 90.14
>PF08782 c-SKI_SMAD_bind: c-SKI Smad4 binding domain; InterPro: IPR014890 c-SKI is an oncoprotein that inhibits TGF-beta signalling through interaction with Smad proteins [] Back     alignment and domain information 
Probab=100.00  E-value=1e-44  Score=308.30  Aligned_cols=93  Identities=48%  Similarity=1.065  Sum_probs=64.6

Q ss_pred             cceeeecccCceeeeeeccccCCCCCCceeccccccccCCCceeEeeccCCCCCccccCCCCcCcccceeecccc---cC
Q psy1165         196 SFKVYHECFGKCKGVCMPELFTDGESRCIQCLECHGFFSPQKFVCHVHLSSENRTCHWGFESVKWRSYLLAVEEQ---QN  272 (461)
Q Consensus       196 ~f~V~HeCfggc~G~f~P~ly~~~~a~CI~C~~C~~~FsP~kFV~HsH~~~e~r~cHwGfDSanWr~yl~l~~~~---~~  272 (461)
                      +|+|||||||||+|+|+|+||++++|+||+|.+|+++|||+|||+|+|+++|++||||||||+|||+||+|++|+   +.
T Consensus         1 sf~V~HeC~g~c~G~f~P~lY~~~~a~CI~C~~C~~~FsP~kFV~HsHr~~e~~t~hwgfds~nWr~yL~l~~d~~~~~~   80 (96)
T PF08782_consen    1 SFDVYHECFGGCRGSFIPELYSSPNAKCIECLECRGMFSPQKFVFHSHRPQEKRTCHWGFDSANWRRYLHLSQDYRDKEE   80 (96)
T ss_dssp             --EEEE-STT-EEEEE-GGG--STT---EEETTT--EE-HHHHTT--SS---TTEEEES--GGGHHHC-EE-TT---TTC
T ss_pred             CceeEEeecCccceEechhhcCCCCCCceEcccCCCEeCCcCEEEecCCCCCCccCCCccCHhHhhHHheecccccCcch
Confidence            699999999999999999999999999999999999999999999999999999999999999999999999653   34


Q ss_pred             hHHHHHHHHHHHHhhh
Q psy1165         273 YDQCLKILQIFKEQHI  288 (461)
Q Consensus       273 ~~~~~~~l~~~k~~~~  288 (461)
                      .++++++||+|||||+
T Consensus        81 ~~~l~~~le~~k~~f~   96 (96)
T PF08782_consen   81 QERLKQALEDVKAKFN   96 (96)
T ss_dssp             HHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHHHhhC
Confidence            5778899999999984

This protein binds to Smad4 [].; GO: 0005634 nucleus; PDB: 1MR1_C.
>PF02437 Ski_Sno: SKI/SNO/DAC family; InterPro: IPR003380 The c-ski proto-oncogene has been shown to influence proliferation, morphological transformation and myogenic differentiation [] Back     alignment and domain information
>PF08782 c-SKI_SMAD_bind: c-SKI Smad4 binding domain; InterPro: IPR014890 c-SKI is an oncoprotein that inhibits TGF-beta signalling through interaction with Smad proteins [] Back     alignment and domain information
>KOG3915|consensus Back     alignment and domain information
>PF02437 Ski_Sno: SKI/SNO/DAC family; InterPro: IPR003380 The c-ski proto-oncogene has been shown to influence proliferation, morphological transformation and myogenic differentiation [] Back     alignment and domain information
>PF01342 SAND: SAND domain; InterPro: IPR000770 The SAND domain (named after Sp100, AIRE-1, NucP41/75, DEAF-1) is a conserved ~80 residue region found in a number of nuclear proteins, many of which function in chromatin-dependent transcriptional control Back     alignment and domain information
>smart00258 SAND SAND domain Back     alignment and domain information
>PF01342 SAND: SAND domain; InterPro: IPR000770 The SAND domain (named after Sp100, AIRE-1, NucP41/75, DEAF-1) is a conserved ~80 residue region found in a number of nuclear proteins, many of which function in chromatin-dependent transcriptional control Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query461
1sbx_A106 Crystal Structure Of The Dachshund-Homology Domain 3e-34
1sbx_A106 Crystal Structure Of The Dachshund-Homology Domain 3e-09
3eq5_A125 Crystal Structure Of Fragment 137 To 238 Of The Hum 6e-30
3eq5_A125 Crystal Structure Of Fragment 137 To 238 Of The Hum 2e-07
1mr1_C99 Crystal Structure Of A Smad4-Ski Complex Length = 9 9e-22
1mr1_C99 Crystal Structure Of A Smad4-Ski Complex Length = 9 9e-22
>pdb|1SBX|A Chain A, Crystal Structure Of The Dachshund-Homology Domain Of Human Ski Length = 106 Back     alignment and structure 
Iteration: 1

 Score =  142 bits (359), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 68/85 (80%), Positives = 76/85 (89%)
Query: 95  GETISCFVVGGEKRLCLPQILNSVLRDFSLPQINQVCDDLQIFCSRCNPEQLEILKLSGI 154
           GETISCFVVGGEKRLCLPQILNSVLRDFSL QIN VCD+L I+CSRC  +QLEILK+ GI
Sbjct: 21  GETISCFVVGGEKRLCLPQILNSVLRDFSLQQINAVCDELHIYCSRCTADQLEILKVXGI 80
Query: 155 LPLTAASCGLMTKTDAERLCSTLLH 179
           LP +A SCGL+TKTDAERLC+ LL+
Sbjct: 81  LPFSAPSCGLITKTDAERLCNALLY 105
>pdb|1SBX|A Chain A, Crystal Structure Of The Dachshund-Homology Domain Of Human Ski Length = 106 Back     alignment and structure
>pdb|3EQ5|A Chain A, Crystal Structure Of Fragment 137 To 238 Of The Human Ski-Like Protein Length = 125 Back     alignment and structure
>pdb|3EQ5|A Chain A, Crystal Structure Of Fragment 137 To 238 Of The Human Ski-Like Protein Length = 125 Back     alignment and structure
>pdb|1MR1|C Chain C, Crystal Structure Of A Smad4-Ski Complex Length = 99 Back     alignment and structure
>pdb|1MR1|C Chain C, Crystal Structure Of A Smad4-Ski Complex Length = 99 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query461
3eq5_A125 SKI-like protein; TGF-beta, SIG protein, structura 3e-41
3eq5_A125 SKI-like protein; TGF-beta, SIG protein, structura 3e-11
1mr1_C99 SKI oncogene, SKI, C-SKI; SMAD, cancer, TGF-B sign 1e-39
1mr1_C99 SKI oncogene, SKI, C-SKI; SMAD, cancer, TGF-B sign 1e-39
1sbx_A106 SKI oncogene, C-SKI; winged helix, forkhead, oncop 2e-38
1sbx_A106 SKI oncogene, C-SKI; winged helix, forkhead, oncop 2e-11
1l8r_A101 Dachshund; winged-helix, transcription; 1.65A {Hom 2e-31
1l8r_A101 Dachshund; winged-helix, transcription; 1.65A {Hom 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>3eq5_A SKI-like protein; TGF-beta, SIG protein, structural genomics, SGC stockholm, structural GEN consortium, SGC; 2.45A {Homo sapiens} Length = 125 Back     alignment and structure
 Score =  142 bits (359), Expect = 3e-41
 Identities = 68/120 (56%), Positives = 87/120 (72%)

Query: 62  EPYITPPPPPIQQLPILTTSDQSRSELSETLLEGETISCFVVGGEKRLCLPQILNSVLRD 121
             + +      + L   +    S +EL++T+LEGE+ISCF VGGEKRLCLPQ+LNSVLR+
Sbjct: 5   HHHSSGVDLGTENLYFQSMPSDSSTELTQTVLEGESISCFQVGGEKRLCLPQVLNSVLRE 64

Query: 122 FSLPQINQVCDDLQIFCSRCNPEQLEILKLSGILPLTAASCGLMTKTDAERLCSTLLHQR 181
           F+L QIN VCD+L I+CSRC  +QL ILK+ GILP  A SCGL+T TDA+RLC+ LL  R
Sbjct: 65  FTLQQINTVCDELYIYCSRCTSDQLHILKVLGILPFNAPSCGLITLTDAQRLCNALLRPR 124
>3eq5_A SKI-like protein; TGF-beta, SIG protein, structural genomics, SGC stockholm, structural GEN consortium, SGC; 2.45A {Homo sapiens} Length = 125 Back     alignment and structure
>1mr1_C SKI oncogene, SKI, C-SKI; SMAD, cancer, TGF-B signaling, protein interaction, signaling protein; 2.85A {Homo sapiens} SCOP: d.217.1.2 Length = 99 Back     alignment and structure
>1mr1_C SKI oncogene, SKI, C-SKI; SMAD, cancer, TGF-B signaling, protein interaction, signaling protein; 2.85A {Homo sapiens} SCOP: d.217.1.2 Length = 99 Back     alignment and structure
>1sbx_A SKI oncogene, C-SKI; winged helix, forkhead, oncoprotein; 1.65A {Homo sapiens} SCOP: a.6.1.4 Length = 106 Back     alignment and structure
>1sbx_A SKI oncogene, C-SKI; winged helix, forkhead, oncoprotein; 1.65A {Homo sapiens} SCOP: a.6.1.4 Length = 106 Back     alignment and structure
>1l8r_A Dachshund; winged-helix, transcription; 1.65A {Homo sapiens} SCOP: a.6.1.4 Length = 101 Back     alignment and structure
>1l8r_A Dachshund; winged-helix, transcription; 1.65A {Homo sapiens} SCOP: a.6.1.4 Length = 101 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query461
3eq5_A125 SKI-like protein; TGF-beta, SIG protein, structura 100.0
1sbx_A106 SKI oncogene, C-SKI; winged helix, forkhead, oncop 100.0
1mr1_C99 SKI oncogene, SKI, C-SKI; SMAD, cancer, TGF-B sign 100.0
1mr1_C99 SKI oncogene, SKI, C-SKI; SMAD, cancer, TGF-B sign 100.0
1l8r_A101 Dachshund; winged-helix, transcription; 1.65A {Hom 100.0
3eq5_A125 SKI-like protein; TGF-beta, SIG protein, structura 99.45
1sbx_A106 SKI oncogene, C-SKI; winged helix, forkhead, oncop 99.33
1l8r_A101 Dachshund; winged-helix, transcription; 1.65A {Hom 99.14
>3eq5_A SKI-like protein; TGF-beta, SIG protein, structural genomics, SGC stockholm, structural GEN consortium, SGC; 2.45A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=7.2e-45  Score=319.17  Aligned_cols=107  Identities=63%  Similarity=1.103  Sum_probs=97.8

Q ss_pred             CCCeeecCCCCCCceeeeeEcCeeEEEEEECCeeecchHHHHHHHhhcCChHHHHhhhcccceeeccCCHHHHHHHHHcC
Q psy1165          74 QLPILTTSDQSRSELSETLLEGETISCFVVGGEKRLCLPQILNSVLRDFSLPQINQVCDDLQIFCSRCNPEQLEILKLSG  153 (461)
Q Consensus        74 ~~Pil~~~D~~~~e~~~t~l~G~~I~~F~VgGe~rLCLpQi~~~vLk~fsl~~I~~~~~~L~I~c~~Ctp~QL~~Lk~~g  153 (461)
                      -.||.+.+|.+++|+.+|+|+|++|+||+||||+|||||||+|+|||||+++|||+++++|+|||++|||+||++||++|
T Consensus        17 ~~~~~s~ps~~s~e~~~t~l~G~~Ia~F~VgGe~rLCLPQi~~~vLk~fsl~~I~~~~~~L~I~c~~Ct~eQL~~Lk~~G   96 (125)
T 3eq5_A           17 NLYFQSMPSDSSTELTQTVLEGESISCFQVGGEKRLCLPQVLNSVLREFTLQQINTVCDELYIYCSRCTSDQLHILKVLG   96 (125)
T ss_dssp             -----CCGGGCSSCCEEEEETTEEEEEEEETTEEEEEHHHHHHTTTTTSCHHHHHHHHHHHTCCCEECCHHHHHHHHHTT
T ss_pred             CceeecCCCCCCCeeEEEEECCEEEEEEEECCEEEeEHHHHHHHHHHcCCHHHHHHHHHhccceeecCCHHHHHHHHHcC
Confidence            34566444444699999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCccccccchhHHHHHHHHhcCC
Q psy1165         154 ILPLTAASCGLMTKTDAERLCSTLLHQ  180 (461)
Q Consensus       154 ilP~~a~sCgLITktDAERLc~~ll~~  180 (461)
                      |||++|+|||||||+||||||++||++
T Consensus        97 aiP~~a~~CgLITk~DaErLc~~ll~~  123 (125)
T 3eq5_A           97 ILPFNAPSCGLITLTDAQRLCNALLRP  123 (125)
T ss_dssp             SSCTTCCCCEEEEHHHHHHHHHHHHCC
T ss_pred             CCCCCCccccceeHHHHHHHHHHhcCC
Confidence            999999999999999999999999996
>1sbx_A SKI oncogene, C-SKI; winged helix, forkhead, oncoprotein; 1.65A {Homo sapiens} SCOP: a.6.1.4 Back     alignment and structure
>1mr1_C SKI oncogene, SKI, C-SKI; SMAD, cancer, TGF-B signaling, protein interaction, signaling protein; 2.85A {Homo sapiens} SCOP: d.217.1.2 Back     alignment and structure
>1mr1_C SKI oncogene, SKI, C-SKI; SMAD, cancer, TGF-B signaling, protein interaction, signaling protein; 2.85A {Homo sapiens} SCOP: d.217.1.2 Back     alignment and structure
>1l8r_A Dachshund; winged-helix, transcription; 1.65A {Homo sapiens} SCOP: a.6.1.4 Back     alignment and structure
>3eq5_A SKI-like protein; TGF-beta, SIG protein, structural genomics, SGC stockholm, structural GEN consortium, SGC; 2.45A {Homo sapiens} Back     alignment and structure
>1sbx_A SKI oncogene, C-SKI; winged helix, forkhead, oncoprotein; 1.65A {Homo sapiens} SCOP: a.6.1.4 Back     alignment and structure
>1l8r_A Dachshund; winged-helix, transcription; 1.65A {Homo sapiens} SCOP: a.6.1.4 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 461
d1sbxa_106 a.6.1.4 (A:) Ski oncogene {Human (Homo sapiens) [T 9e-45
d1sbxa_106 a.6.1.4 (A:) Ski oncogene {Human (Homo sapiens) [T 3e-15
d1mr1c_97 d.217.1.2 (C:) SMAD4-binding domain of oncoprotein 1e-39
d1mr1c_97 d.217.1.2 (C:) SMAD4-binding domain of oncoprotein 1e-39
d1l8ra_101 a.6.1.4 (A:) Retinal determination protein Dachshu 2e-37
d1l8ra_101 a.6.1.4 (A:) Retinal determination protein Dachshu 2e-12
>d1sbxa_ a.6.1.4 (A:) Ski oncogene {Human (Homo sapiens) [TaxId: 9606]} Length = 106 Back     information, alignment and structure

class: All alpha proteins
fold: Putative DNA-binding domain
superfamily: Putative DNA-binding domain
family: Dachshund-homology domain
domain: Ski oncogene
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  149 bits (379), Expect = 9e-45
 Identities = 73/104 (70%), Positives = 84/104 (80%)

Query: 76  PILTTSDQSRSELSETLLEGETISCFVVGGEKRLCLPQILNSVLRDFSLPQINQVCDDLQ 135
             +       +E  ET+LEGETISCFVVGGEKRLCLPQILNSVLRDFSL QIN VCD+L 
Sbjct: 2   SHMFMPSDRSTERCETVLEGETISCFVVGGEKRLCLPQILNSVLRDFSLQQINAVCDELH 61

Query: 136 IFCSRCNPEQLEILKLSGILPLTAASCGLMTKTDAERLCSTLLH 179
           I+CSRC  +QLEILK+ GILP +A SCGL+TKTDAERLC+ LL+
Sbjct: 62  IYCSRCTADQLEILKVMGILPFSAPSCGLITKTDAERLCNALLY 105
>d1sbxa_ a.6.1.4 (A:) Ski oncogene {Human (Homo sapiens) [TaxId: 9606]} Length = 106 Back     information, alignment and structure
>d1mr1c_ d.217.1.2 (C:) SMAD4-binding domain of oncoprotein Ski {Human (Homo sapiens) [TaxId: 9606]} Length = 97 Back     information, alignment and structure
>d1mr1c_ d.217.1.2 (C:) SMAD4-binding domain of oncoprotein Ski {Human (Homo sapiens) [TaxId: 9606]} Length = 97 Back     information, alignment and structure
>d1l8ra_ a.6.1.4 (A:) Retinal determination protein Dachshund {Human (Homo sapiens) [TaxId: 9606]} Length = 101 Back     information, alignment and structure
>d1l8ra_ a.6.1.4 (A:) Retinal determination protein Dachshund {Human (Homo sapiens) [TaxId: 9606]} Length = 101 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query461
d1mr1c_97 SMAD4-binding domain of oncoprotein Ski {Human (Ho 100.0
d1sbxa_106 Ski oncogene {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1mr1c_97 SMAD4-binding domain of oncoprotein Ski {Human (Ho 100.0
d1l8ra_101 Retinal determination protein Dachshund {Human (Ho 100.0
d1sbxa_106 Ski oncogene {Human (Homo sapiens) [TaxId: 9606]} 99.41
d1l8ra_101 Retinal determination protein Dachshund {Human (Ho 99.1
d1ufna_94 Putative nuclear protein homolog 5830484a20rik {Mo 92.66
>d1mr1c_ d.217.1.2 (C:) SMAD4-binding domain of oncoprotein Ski {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: SAND domain-like
superfamily: SAND domain-like
family: SMAD4-binding domain of oncoprotein Ski
domain: SMAD4-binding domain of oncoprotein Ski
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-47  Score=319.94  Aligned_cols=93  Identities=46%  Similarity=1.009  Sum_probs=87.8

Q ss_pred             cceeeecccCceeeeeeccccCCCCCCceeccccccccCCCceeEeeccCCCCCccccCCCCcCcccceeeccccc---C
Q psy1165         196 SFKVYHECFGKCKGVCMPELFTDGESRCIQCLECHGFFSPQKFVCHVHLSSENRTCHWGFESVKWRSYLLAVEEQQ---N  272 (461)
Q Consensus       196 ~f~V~HeCfggc~G~f~P~ly~~~~a~CI~C~~C~~~FsP~kFV~HsH~~~e~r~cHwGfDSanWr~yl~l~~~~~---~  272 (461)
                      +|+|||||||||+|+|+|+||++++|+||+|.+|+++|||||||+|+|+++|+|||||||||||||+||+|+.|+.   .
T Consensus         2 ~~~VyHeCfg~c~G~f~P~~Y~~~~a~CI~C~~C~~~FsP~kFv~HsHr~~e~~tchwgfDSaNWR~yL~L~~d~~~~~~   81 (97)
T d1mr1c_           2 HMRVYHECFGKCKGLLVPELYSSPSAACIQCLDCRLMYPPHKFVVHSHKALENRTCHWGFDSANWRAYILLSQDYTGKEE   81 (97)
T ss_dssp             CCEEEECSTTCEEEEECGGGCCSTTCCCEEETTTCCEECHHHHTTCCCSCCCSSEEEESCCGGGHHHHCEECTTCCCTTH
T ss_pred             cceEEEEecCCcceEechhhccCCCCCeeEcccCCCEeCccceEEecccCCCCccccCCCChHHhhhheeeccccCCccH
Confidence            7999999999999999999999999999999999999999999999999999999999999999999999997654   3


Q ss_pred             hHHHHHHHHHHHHhhh
Q psy1165         273 YDQCLKILQIFKEQHI  288 (461)
Q Consensus       273 ~~~~~~~l~~~k~~~~  288 (461)
                      .++++++|+++||||+
T Consensus        82 ~~~l~~~~edvK~~Fn   97 (97)
T d1mr1c_          82 QARLGRCLDDVKEKFD   97 (97)
T ss_dssp             HHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHhhC
Confidence            4568899999999985
>d1sbxa_ a.6.1.4 (A:) Ski oncogene {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mr1c_ d.217.1.2 (C:) SMAD4-binding domain of oncoprotein Ski {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l8ra_ a.6.1.4 (A:) Retinal determination protein Dachshund {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sbxa_ a.6.1.4 (A:) Ski oncogene {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l8ra_ a.6.1.4 (A:) Retinal determination protein Dachshund {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ufna_ d.217.1.1 (A:) Putative nuclear protein homolog 5830484a20rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure