Psyllid ID: psy11729

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-

MTEPLQINKMEIKQANCLDQAFFDQPCIDLANALLGKYLVRRLSCGTLLIGKIVETESYLGVEDRASHSYNNRRTPRNEPMYMKPGTIYVYFTYGMYHCFNLSSQESGGAVLIRSLEPVHGLDIMNRLRNQFNENQNKSKRNNHLPNSQNNEETHSQSNRNSPAKKQKLIKSKQTLSSNDWDQPNKKSKLQDRDLCNGPSKLCISMDITIEYLNKRHICESEEMWVQDLDCESNITIVESSRIGIGDFAKEWKAKLLRFYILGNKCVSKTDKKMESQMLSC

cccccccccccccccccccHHHHcccHHHHHHHHcccEEEEEccccEEEEEEEEEEEEccccccccccccccccccccccccccccEEEEEEEEccEEEcccEEcccccEEEEEEccccccHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccEEEccccEEEcccccccccccEEEEcccccccccEEEEcccccccccHHHHcccEEEEEcccccccccccccHHHcccc

cccccccccccccccccccHHHHcccHHHHHHHHHccEEEEEcccccEEEEEEEEEEEcccccccHHHccccccccccccccccccEEEEEEEEccEEEEEEEccccccEEEEEEEccccHHHHHHHHHccccccHHHcccccHHHHHHcccHHccccccccHHHHHHHHcccHHHccccccccccccccccHHHcccHHHHHHHcccccccccccHccccccEEEEcccccccccEEEccccccccccHHHccccEEEEEcccccccHccHHHHHHHHcc

MTEPLQINKMEIkqancldqaffdqpCIDLANALLGKYLVRRLSCGTLLIGKivetesylgvedrashsynnrrtprnepmymkpgtIYVYFTYGMyhcfnlssqesggavlirslepvhgldIMNRLRNQFnenqnkskrnnhlpnsqnneethsqsnrnspakKQKLIKSKqtlssndwdqpnkksklqdrdlcngpsklciSMDITIEYLNKRhiceseemwvqdldcesnitivessrigiGDFAKEWKAKLLRFYILGNKCVSKTDKKMESQMLSC

MTEPLQINKMEIKQANCLDQAFFDQPCIDLANALLGKYLVRRLSCGTLLIGkivetesylgvedrashsynnrrtprnepmymkPGTIYVYFTYGMYHCFNLSSQESGGAVLIRSLEPVHGLDIMNRLRNQFNenqnkskrnnhlpnsqnneethsqsnrnspakKQKLIKSkqtlssndwdqpnkksklqdrdlcngpSKLCISMDITIEYLNKRHICESEEMWVQDLDCESNITivessrigiGDFAKEWKAKLLRFYILgnkcvsktdkkmesqmlsc

**********EIKQANCLDQAFFDQPCIDLANALLGKYLVRRLSCGTLLIGKIVETESYLGVE******************YMKPGTIYVYFTYGMYHCFNLSSQESGGAVLIRSLEPVHGLDIMNR********************************************************************CNGPSKLCISMDITIEYLNKRHICESEEMWVQDLDCESNITIVESSRIGIGDFAKEWKAKLLRFYILGNKCV**************

*****************LDQAFFDQPCIDLANALLGKYLVRRLSCGTLLIGKIVETESYLGVEDRASHSYNNRRTPRNEPMYMKPGTIYVYFTYGMYHCFNLSSQESGGAVLIRSLEPVHGLDIMNRLRNQFNENQNKSKRNNHLPNSQNNEETHSQSNRNSPAKKQKLIKSKQTLSSNDWDQPNKKSKLQDRDLCNGPSKLCISMDITIEYLNKRHICESEEMWVQDLDCESNITIVESSRIGIGDFAKEWKAKLLRFYILGNKCVSK************

MTEPLQINKMEIKQANCLDQAFFDQPCIDLANALLGKYLVRRLSCGTLLIGKIVETESYLGVEDRASHSYNNRRTPRNEPMYMKPGTIYVYFTYGMYHCFNLSSQESGGAVLIRSLEPVHGLDIMNRLRNQFNENQNKSKRNNHL*********************************************QDRDLCNGPSKLCISMDITIEYLNKRHICESEEMWVQDLDCESNITIVESSRIGIGDFAKEWKAKLLRFYILGNKCVSK************

****LQINKMEIKQANCLDQAFFDQPCIDLANALLGKYLVRRLSCGTLLIGKIVETESYLGVEDRASHSYNNRRTPRNEPMYMKPGTIYVYFTYGMYHCFNLSSQESGGAVLIRSLEPVHGLDIMNRLRNQFNENQNKSKRNNHLPNSQNNEETHSQSNRNSPAKKQKLIKSKQTLSSNDWDQPNKKSKLQDRDLCNGPSKLCISMDITIEYLNKRHICESEEMWVQDLDCESNITIVESSRIGIGDFAKEWKAKLLRFYILGNKCVSKTDKKMESQ*LSC

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		281	2.2.26 [Sep-21-2011]
Q04841		333	DNA-3-methyladenine glyco	yes	N/A	0.736	0.621	0.407	5e-50
P23571		317	DNA-3-methyladenine glyco	yes	N/A	0.736	0.652	0.387	1e-44
P29372		298	DNA-3-methyladenine glyco	yes	N/A	0.725	0.684	0.381	1e-44
Q0SPY0		205	Putative 3-methyladenine	yes	N/A	0.708	0.970	0.380	2e-37
Q0TM75		205	Putative 3-methyladenine	yes	N/A	0.708	0.970	0.380	3e-37
Q8XHA9		205	Putative 3-methyladenine	yes	N/A	0.708	0.970	0.376	7e-37
B2UXQ2		202	Putative 3-methyladenine	yes	N/A	0.697	0.970	0.357	2e-33
B2THZ1		202	Putative 3-methyladenine	yes	N/A	0.697	0.970	0.361	4e-33
B1KZY0		203	Putative 3-methyladenine	yes	N/A	0.693	0.960	0.356	5e-33
Q8SQI1		208	Probable DNA-3-methyladen	yes	N/A	0.654	0.884	0.374	5e-33

>sp\|Q04841\|3MG_MOUSE DNA-3-methyladenine glycosylase OS=Mus musculus GN=Mpg PE=2 SV=3	Back alignment and function desciption

 Score =  197 bits (502), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 106/260 (40%), Positives = 145/260 (55%), Gaps = 53/260 (20%)

Query: 18  LDQAFFDQPCIDLANALLGKYLVRRLSCGTLLIGKIVETESYLGVEDRASHSYNNRRTPR 77
           L   FFDQP + LA A LG+ LVRRL+ GT L G+IVETE+YLG ED A+HS   R+TPR
Sbjct: 106 LGPEFFDQPAVTLARAFLGQVLVRRLADGTELRGRIVETEAYLGPEDEAAHSRGGRQTPR 165

Query: 78  NEPMYMKPGTIYVYFTYGMYHCFNLSSQESGGAVLIRSLEPVHGLDIMNRLRNQFNENQN 137
           N  M+MKPGT+YVY  YGMY C N+SSQ +G  VL+R+LEP+ GL+ M +LRN       
Sbjct: 166 NRGMFMKPGTLYVYLIYGMYFCLNVSSQGAGACVLLRALEPLEGLETMRQLRNSLR---- 221

Query: 138 KSKRNNHLPNSQNNEETHSQSNRNSPAKKQKLIKSKQTLSSNDWDQPNKKSKLQDRDLCN 197
                                              K T+  +          L+DR+LC+
Sbjct: 222 -----------------------------------KSTVGRS----------LKDRELCS 236

Query: 198 GPSKLCISMDITIEYLNKRHICESEEMWVQ--DLDCESNITIVESSRIGIGDFAKEWKAK 255
           GPSKLC ++ I   + ++R + + + +W++   L+  S   +V ++RIGIG  A EW  K
Sbjct: 237 GPSKLCQALAIDKSF-DQRDLAQDDAVWLEHGPLESSSPAVVVAAARIGIG-HAGEWTQK 294

Query: 256 LLRFYILGNKCVSKTDKKME 275
            LRFY+ G+  VS  D+  E
Sbjct: 295 PLRFYVQGSPWVSVVDRVAE 314

Hydrolysis of the deoxyribose N-glycosidic bond to excise 3-methyladenine, and 7-methylguanine from the damaged DNA polymer formed by alkylation lesions.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 2EC: .EC: 2EC: .EC: 2EC: 1

>sp\|P23571\|3MG_RAT DNA-3-methyladenine glycosylase (Fragment) OS=Rattus norvegicus GN=Mpg PE=2 SV=2	Back alignment and function description

>sp\|P29372\|3MG_HUMAN DNA-3-methyladenine glycosylase OS=Homo sapiens GN=MPG PE=1 SV=3	Back alignment and function description

>sp\|Q0SPY0\|3MGH_CLOPS Putative 3-methyladenine DNA glycosylase OS=Clostridium perfringens (strain SM101 / Type A) GN=CPR_2580 PE=3 SV=1	Back alignment and function description

>sp\|Q0TM75\|3MGH_CLOP1 Putative 3-methyladenine DNA glycosylase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=CPF_2901 PE=3 SV=1	Back alignment and function description

>sp\|Q8XHA9\|3MGH_CLOPE Putative 3-methyladenine DNA glycosylase OS=Clostridium perfringens (strain 13 / Type A) GN=CPE2576 PE=3 SV=1	Back alignment and function description

>sp\|B2UXQ2\|3MGH_CLOBA Putative 3-methyladenine DNA glycosylase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=CLH_0116 PE=3 SV=1	Back alignment and function description

>sp\|B2THZ1\|3MGH_CLOBB Putative 3-methyladenine DNA glycosylase OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=CLL_A0132 PE=3 SV=1	Back alignment and function description

>sp\|B1KZY0\|3MGH_CLOBM Putative 3-methyladenine DNA glycosylase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=CLK_0705 PE=3 SV=1	Back alignment and function description

>sp\|Q8SQI1\|3MG_ENCCU Probable DNA-3-methyladenine glycosylase OS=Encephalitozoon cuniculi (strain GB-M1) GN=ECU05_1590 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		281
156552949		301	PREDICTED: DNA-3-methyladenine glycosyla	0.775	0.724	0.450	2e-57
395515606		282	PREDICTED: DNA-3-methyladenine glycosyla	0.743	0.741	0.431	3e-51
156553484		298	PREDICTED: DNA-3-methyladenine glycosyla	0.768	0.724	0.435	1e-50
334333543		325	PREDICTED: DNA-3-methyladenine glycosyla	0.729	0.630	0.430	6e-50
91079320		224	PREDICTED: similar to N-methylpurine-DNA	0.772	0.968	0.449	1e-49
326929265		273	PREDICTED: DNA-3-methyladenine glycosyla	0.761	0.783	0.424	3e-49
242017394		276	DNA-3-methyladenine glycosylase, putativ	0.750	0.764	0.434	3e-49
307201922		235	DNA-3-methyladenine glycosylase [Harpegn	0.761	0.910	0.409	4e-49
363739489		273	PREDICTED: DNA-3-methyladenine glycosyla	0.768	0.791	0.417	8e-49
148691815		333	N-methylpurine-DNA glycosylase [Mus musc	0.736	0.621	0.407	3e-48

>gi\|156552949\|ref\|XP_001603093.1\| PREDICTED: DNA-3-methyladenine glycosylase-like [Nasonia vitripennis]	Back alignment and taxonomy information

 Score =  228 bits (582), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 119/264 (45%), Positives = 158/264 (59%), Gaps = 46/264 (17%)

Query: 15  ANCLDQAFFDQPCIDLANALLGKYLVRRLSCGTLLIGKIVETESYLGVEDRASHSYNNRR 74
           +N L  +F+D PC  LA ++LGK LVR+L  GT+L G+IVETESYLG+ED ASH++  + 
Sbjct: 78  SNRLPYSFYDVPCKTLAKSILGKVLVRKLENGTILKGRIVETESYLGIEDGASHTFKGKV 137

Query: 75  TPRNEPMYMKPGTIYVYFTYGMYHCFNLSSQESGGAVLIRSLEPVHGLDIMNRLRNQFNE 134
           TPRN PMYMKPGTIYVYFTYGMYHCFN+SSQE G AVL+R+LEP+ G+D M         
Sbjct: 138 TPRNTPMYMKPGTIYVYFTYGMYHCFNISSQEEGSAVLVRALEPLEGIDQM--------- 188

Query: 135 NQNKSKRNNHLPNSQNNEETHSQSNRNSPAKKQKLIKSKQTLSSNDWDQPNKKSKLQDRD 194
                                +Q     P  K++   SK+               L+  +
Sbjct: 189 ---------------------AQHRSLKPGAKEQKKLSKE---------------LKTHE 212

Query: 195 LCNGPSKLCISMDITIEYLNKRHICESEEMWVQDLDCESNITIVESSRIGIGDFAKEWKA 254
           LCNGPSK+C+++ +  ++ +K  +C  +E+W++D   +  I IVE  RIGI     EW  
Sbjct: 213 LCNGPSKICMALQLEKQH-SKYSMCSWKELWLEDDGTKEEIKIVECPRIGIESSGVEWSQ 271

Query: 255 KLLRFYILGNKCVSKTDKKMESQM 278
           K LR+YI G+KCVSK DKK E Q 
Sbjct: 272 KPLRYYIYGHKCVSKRDKKAELQF 295

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|395515606\|ref\|XP_003761992.1\| PREDICTED: DNA-3-methyladenine glycosylase [Sarcophilus harrisii]	Back alignment and taxonomy information

>gi\|156553484\|ref\|XP_001600337.1\| PREDICTED: DNA-3-methyladenine glycosylase-like [Nasonia vitripennis]	Back alignment and taxonomy information

>gi\|334333543\|ref\|XP_001372162.2\| PREDICTED: DNA-3-methyladenine glycosylase-like [Monodelphis domestica]	Back alignment and taxonomy information

>gi\|91079320\|ref\|XP_967967.1\| PREDICTED: similar to N-methylpurine-DNA glycosylase [Tribolium castaneum] gi\|270004337\|gb\|EFA00785.1\| hypothetical protein TcasGA2_TC003671 [Tribolium castaneum]	Back alignment and taxonomy information

>gi\|326929265\|ref\|XP_003210788.1\| PREDICTED: DNA-3-methyladenine glycosylase-like [Meleagris gallopavo]	Back alignment and taxonomy information

>gi\|242017394\|ref\|XP_002429174.1\| DNA-3-methyladenine glycosylase, putative [Pediculus humanus corporis] gi\|212514052\|gb\|EEB16436.1\| DNA-3-methyladenine glycosylase, putative [Pediculus humanus corporis]	Back alignment and taxonomy information

>gi\|307201922\|gb\|EFN81544.1\| DNA-3-methyladenine glycosylase [Harpegnathos saltator]	Back alignment and taxonomy information

>gi\|363739489\|ref\|XP_414945.3\| PREDICTED: DNA-3-methyladenine glycosylase [Gallus gallus]	Back alignment and taxonomy information

>gi\|148691815\|gb\|EDL23762.1\| N-methylpurine-DNA glycosylase [Mus musculus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		281
ZFIN\|ZDB-GENE-070410-121		293	mpg "N-methylpurine-DNA glycos	0.462	0.443	0.576	1.8e-50
ZFIN\|ZDB-GENE-040724-115		234	si:xx-by187g17.9 "si:xx-by187g	0.462	0.555	0.576	4.7e-50
MGI\|MGI:97073		333	Mpg "N-methylpurine-DNA glycos	0.455	0.384	0.550	4.2e-49
UNIPROTKB\|F1NMW5		274	MPG "Uncharacterized protein"	0.487	0.5	0.510	1.1e-48
RGD\|3106		317	Mpg "N-methylpurine-DNA glycos	0.462	0.410	0.541	2.3e-48
UNIPROTKB\|P23571		317	Mpg "DNA-3-methyladenine glyco	0.462	0.410	0.541	2.3e-48
UNIPROTKB\|Q5J9I4		293	PIG16 "Proliferation-inducing	0.387	0.372	0.614	1.6e-47
UNIPROTKB\|G5E9E2		281	MPG "N-methylpurine-DNA glycos	0.387	0.387	0.614	1.6e-47
UNIPROTKB\|P29372		298	MPG "DNA-3-methyladenine glyco	0.387	0.365	0.614	1.6e-47
UNIPROTKB\|F1MKN2		281	MPG "Uncharacterized protein"	0.516	0.516	0.489	2e-47

ZFIN\|ZDB-GENE-070410-121 mpg "N-methylpurine-DNA glycosylase" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

 Score = 368 (134.6 bits), Expect = 1.8e-50, Sum P(2) = 1.8e-50
 Identities = 75/130 (57%), Positives = 93/130 (71%)

Query:    18 LDQAFFDQPCIDLANALLGKYLVRRLSCGTLLIGKIVETESYLGVEDRASHSYNNRRTPR 77
             L  +FF+QPC++LA A LGK LVR+L+ GT L GKIVETE+YLG ED+ASHS   +RT R
Sbjct:    70 LTYSFFNQPCVELAKAFLGKVLVRKLTDGTELRGKIVETEAYLGGEDKASHSAGGKRTER 129

Query:    78 NEPMYMKPGTIYVYFTYGMYHCFNLSSQESGGAVLIRSLEPVHGLDIMNRLRNQFNENQN 137
             N  M+MKPGTIYVY  YG+Y C N+SSQ  G AVL+RSLEP+ G D+M  LR    +   
Sbjct:   130 NTAMFMKPGTIYVYPIYGIYLCMNVSSQGEGAAVLLRSLEPLSGQDVMRGLRAAKRKPGA 189

Query:   138 KSKRNNHLPN 147
             KS ++  L N
Sbjct:   190 KSLKDKELCN 199

GO:0003824 "catalytic activity" evidence=IEA

GO:0003905 "alkylbase DNA N-glycosylase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006284 "base-excision repair" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

ZFIN\|ZDB-GENE-040724-115 si:xx-by187g17.9 "si:xx-by187g17.9" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

MGI\|MGI:97073 Mpg "N-methylpurine-DNA glycosylase" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NMW5 MPG "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

RGD\|3106 Mpg "N-methylpurine-DNA glycosylase" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|P23571 Mpg "DNA-3-methyladenine glycosylase" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5J9I4 PIG16 "Proliferation-inducing protein 16" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|G5E9E2 MPG "N-methylpurine-DNA glycosylase, isoform CRA_b" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|P29372 MPG "DNA-3-methyladenine glycosylase" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MKN2 MPG "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
C3KTV2	3MGH_CLOB6	3, ., 2, ., 2, ., -	0.3478	0.7010	0.9704	yes	N/A
A5I1A3	3MGH_CLOBH	3, ., 2, ., 2, ., -	0.3478	0.7010	0.9704	yes	N/A
Q8XHA9	3MGH_CLOPE	3, ., 2, ., 2, ., -	0.3764	0.7081	0.9707	yes	N/A
B9IRB4	3MGH_BACCQ	3, ., 2, ., 2, ., -	0.3242	0.6832	0.9365	yes	N/A
A4IY77	3MGH_FRATW	3, ., 2, ., 2, ., -	0.3579	0.6441	0.9378	yes	N/A
A7GCV4	3MGH_CLOBL	3, ., 2, ., 2, ., -	0.3478	0.7010	0.9704	yes	N/A
A7FTE3	3MGH_CLOB1	3, ., 2, ., 2, ., -	0.3478	0.7010	0.9704	yes	N/A
A7NBW2	3MGH_FRATF	3, ., 2, ., 2, ., -	0.3579	0.6441	0.9378	yes	N/A
Q97EY6	3MGH_CLOAB	3, ., 2, ., 2, ., -	0.3397	0.7046	0.9658	yes	N/A
B2A7A8	3MGH_NATTJ	3, ., 2, ., 2, ., -	0.3478	0.6832	0.9696	yes	N/A
C3LE50	3MGH_BACAC	3, ., 2, ., 2, ., -	0.3242	0.6832	0.9365	yes	N/A
P29372	3MG_HUMAN	3, ., 2, ., 2, ., 2, 1	0.3818	0.7259	0.6845	yes	N/A
A0PZK9	3MGH_CLONN	3, ., 2, ., 2, ., -	0.3437	0.6868	0.9601	yes	N/A
B7JSE3	3MGH_BACC0	3, ., 2, ., 2, ., -	0.3242	0.6832	0.9365	yes	N/A
Q11UN5	3MGH_CYTH3	3, ., 2, ., 2, ., -	0.3215	0.6761	0.9595	yes	N/A
P23571	3MG_RAT	3, ., 2, ., 2, ., 2, 1	0.3875	0.7366	0.6529	yes	N/A
C3P1N9	3MGH_BACAA	3, ., 2, ., 2, ., -	0.3242	0.6832	0.9365	yes	N/A
Q0BM56	3MGH_FRATO	3, ., 2, ., 2, ., -	0.3579	0.6441	0.9378	yes	N/A
A7GLP0	3MGH_BACCN	3, ., 2, ., 2, ., -	0.3149	0.6832	0.9411	yes	N/A
B1IJE7	3MGH_CLOBK	3, ., 2, ., 2, ., -	0.3478	0.7010	0.9704	yes	N/A
C1FKZ0	3MGH_CLOBJ	3, ., 2, ., 2, ., -	0.3478	0.7010	0.9704	yes	N/A
Q63FD4	3MGH_BACCZ	3, ., 2, ., 2, ., -	0.3242	0.6832	0.9365	yes	N/A
B2THZ1	3MGH_CLOBB	3, ., 2, ., 2, ., -	0.3618	0.6975	0.9702	yes	N/A
B1KZY0	3MGH_CLOBM	3, ., 2, ., 2, ., -	0.3568	0.6939	0.9605	yes	N/A
Q24R48	3MGH_DESHY	3, ., 2, ., 2, ., -	0.3399	0.6975	0.9655	yes	N/A
Q81UJ9	3MGH_BACAN	3, ., 2, ., 2, ., -	0.3242	0.6832	0.9365	yes	N/A
Q2A3P9	3MGH_FRATH	3, ., 2, ., 2, ., -	0.3579	0.6441	0.9378	yes	N/A
Q8SQI1	3MG_ENCCU	3, ., 2, ., 2, ., 2, 1	0.3744	0.6548	0.8846	yes	N/A
Q0W5C8	3MGH_UNCMA	3, ., 2, ., 2, ., -	0.3346	0.6725	0.945	yes	N/A
Q0TM75	3MGH_CLOP1	3, ., 2, ., 2, ., -	0.3803	0.7081	0.9707	yes	N/A
A0RAB9	3MGH_BACAH	3, ., 2, ., 2, ., -	0.3203	0.6832	0.9365	yes	N/A
A8MF35	3MGH_ALKOO	3, ., 2, ., 2, ., -	0.3346	0.7010	0.9752	yes	N/A
C1EZP2	3MGH_BACC3	3, ., 2, ., 2, ., -	0.3281	0.6832	0.9365	yes	N/A
A6LPI2	3MGH_CLOB8	3, ., 2, ., 2, ., -	0.3372	0.7081	0.9802	yes	N/A
Q896H4	3MGH_CLOTE	3, ., 2, ., 2, ., -	0.3464	0.7046	0.9753	yes	N/A
Q04841	3MG_MOUSE	3, ., 2, ., 2, ., 2, 1	0.4076	0.7366	0.6216	yes	N/A
Q6HMV4	3MGH_BACHK	3, ., 2, ., 2, ., -	0.3242	0.6832	0.9365	yes	N/A
Q81HD0	3MGH_BACCR	3, ., 2, ., 2, ., -	0.3242	0.6832	0.9365	yes	N/A
Q5NH09	3MGH_FRATT	3, ., 2, ., 2, ., -	0.3540	0.6441	0.9378	yes	N/A
Q73CV5	3MGH_BACC1	3, ., 2, ., 2, ., -	0.3242	0.6832	0.9365	yes	N/A
Q14IG1	3MGH_FRAT1	3, ., 2, ., 2, ., -	0.3540	0.6441	0.9378	yes	N/A
Q18C13	3MGH_CLOD6	3, ., 2, ., 2, ., -	0.3164	0.6725	0.9356	yes	N/A
B2UXQ2	3MGH_CLOBA	3, ., 2, ., 2, ., -	0.3579	0.6975	0.9702	yes	N/A
B7HXM9	3MGH_BACC7	3, ., 2, ., 2, ., -	0.3242	0.6832	0.9365	yes	N/A
Q0SPY0	3MGH_CLOPS	3, ., 2, ., 2, ., -	0.3803	0.7081	0.9707	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.2.2.21	LOW CONFIDENCE prediction!
3rd Layer	3.2.2	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		281
cd00540		187	cd00540, AAG, Alkyladenine DNA glycosylase catalyz	2e-81
pfam02245		185	pfam02245, Pur_DNA_glyco, Methylpurine-DNA glycosy	2e-67
TIGR00567		192	TIGR00567, 3mg, DNA-3-methyladenine glycosylase (3	2e-58
PRK00802		188	PRK00802, PRK00802, 3-methyladenine DNA glycosylas	4e-55
COG2094		200	COG2094, Mpg, 3-methyladenine DNA glycosylase [DNA	7e-51

>gnl\|CDD\|187726 cd00540, AAG, Alkyladenine DNA glycosylase catalyzes the first step in base excision repair	Back alignment and domain information

 Score =  243 bits (622), Expect = 2e-81
 Identities = 92/249 (36%), Positives = 119/249 (47%), Gaps = 64/249 (25%)

Query: 22  FFDQPCIDLANALLGKYLVRRLSCGTLLIGKIVETESYLGVEDRASHSYNNRRTPRNEPM 81
           FFD+  +++A  LLGK LVRRL  G +L G+IVETE+YLG +D ASH+Y  R T R E M
Sbjct: 1   FFDRDALEVARELLGKVLVRRLP-GGVLSGRIVETEAYLGPDDPASHAYRGRTT-RREAM 58

Query: 82  YMKPGTIYVYFTYGMYHCFNLSSQESG--GAVLIRSLEPVHGLDIMNRLRNQFNENQNKS 139
           +  PGT YVY  YGM+HC N+ +   G   AVLIR+LEP+ GLD+M R R +        
Sbjct: 59  FGPPGTAYVYLIYGMHHCLNVVTGPEGEPAAVLIRALEPLEGLDLMRRRRGK-------- 110

Query: 140 KRNNHLPNSQNNEETHSQSNRNSPAKKQKLIKSKQTLSSNDWDQPNKKSKLQDRDLCNGP 199
           KR   L N                                                  GP
Sbjct: 111 KRGRELTN--------------------------------------------------GP 120

Query: 200 SKLCISMDITIEYLNKRHICESEEMWVQDLDCESNITIVESSRIGIGDFAKEWKAKLLRF 259
            KLC ++ I    LN   + +   +W++D        IV + RIGI D+A E   K  RF
Sbjct: 121 GKLCQALGIDKS-LNGLDLTDPSGLWIEDGGERPPEEIVATPRIGI-DYAGEAADKPWRF 178

Query: 260 YILGNKCVS 268
           Y+ GN  VS
Sbjct: 179 YVKGNPFVS 187

Alkyladenine DNA glycosylase (AAG), also known as 3-methyladenine DNA glycosylase, catalyzes the first step in base excision repair (BER) by cleaving damaged DNA bases within double-stranded DNA to produce an abasic site. AAG bends DNA by intercalating between the base pairs, causing the damaged base to flip out of the double helix and into the enzyme active site for cleavage. Although AAG represents one of six DNA glycosylase classes, it lacks the helix-hairpin-helix active site motif associated with other BER glycosylases and is structurally distinct from them. Length = 187

>gnl\|CDD\|216945 pfam02245, Pur_DNA_glyco, Methylpurine-DNA glycosylase (MPG)	Back alignment and domain information

>gnl\|CDD\|129658 TIGR00567, 3mg, DNA-3-methyladenine glycosylase (3mg)	Back alignment and domain information

>gnl\|CDD\|234840 PRK00802, PRK00802, 3-methyladenine DNA glycosylase; Reviewed	Back alignment and domain information

>gnl\|CDD\|225005 COG2094, Mpg, 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		281
TIGR00567		192	3mg DNA-3-methyladenine glycosylase (3mg). This fa	100.0
PF02245		184	Pur_DNA_glyco: Methylpurine-DNA glycosylase (MPG);	100.0
PRK00802		188	3-methyladenine DNA glycosylase; Reviewed	100.0
cd00540		179	AAG Alkyladenine DNA glycosylase (AAG), also known	100.0
COG2094		200	Mpg 3-methyladenine DNA glycosylase [DNA replicati	100.0
KOG4486\|consensus		261		100.0

>TIGR00567 3mg DNA-3-methyladenine glycosylase (3mg)	Back alignment and domain information

Probab=100.00  E-value=8.4e-83  Score=563.99  Aligned_cols=190  Identities=44%  Similarity=0.779  Sum_probs=175.0

Q ss_pred             CChhhhCCCHHHHHHhccCCeEEEEecCCcEEEEEEEEecccCCCCCCccccCCCCCCCccccccCCCceEEEEEccCce
Q psy11729         18 LDQAFFDQPCIDLANALLGKYLVRRLSCGTLLIGKIVETESYLGVEDRASHSYNNRRTPRNEPMYMKPGTIYVYFTYGMY   97 (281)
Q Consensus        18 L~~~Ff~r~~~~vA~~LLGk~Lvr~~~~G~~l~grIVETEAY~G~~D~AsHay~gkrT~Rn~~MFg~~G~~YVY~~YGmh   97 (281)
                      |+++||++|+++||++||||+|||+.++|..++|||||||||+|++|+|||||+|+||+||++||++|||+|||+|||||
T Consensus         1 l~~~Ff~~~~~~vA~~LLGk~Lv~~~~~g~~~~grIvEtEAY~G~~D~A~Ha~~grrT~Rn~~mfg~~G~~YVY~~YGmh   80 (192)
T TIGR00567         1 MPPEFFQQDAVTLAPRLLGQLLVRRLDKGTEVRGRIVETEAYMGPEDSAAHSRGGRQTPRTRGMFGPPGRLYVYIIYGMH   80 (192)
T ss_pred             CCHHHhcCCHHHHHHHhCCCEEEEECCCCcEEEEEEEEEecccCCCCccccccCCCCCcchHHHccCCceEEEEEecCCE
Confidence            67899999999999999999999999888666899999999999999999999998899999999999999999999999


Q ss_pred             eeeeeeecCCC--cEEEEcccccCCChHHHHHhhccccccccccccCCCCCCCCCCcccccccCCCChhhHHHhhhhhcc
Q psy11729         98 HCFNLSSQESG--GAVLIRSLEPVHGLDIMNRLRNQFNENQNKSKRNNHLPNSQNNEETHSQSNRNSPAKKQKLIKSKQT  175 (281)
Q Consensus        98 ~clNIvt~~~g--~AVLIRAlEP~~G~~~M~~~R~~~~~~~~~~k~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~  175 (281)
                      |||||||+.+|  +||||||+||++|++.|+++|+.      .                                     
T Consensus        81 ~~lNvVt~~~g~p~aVLIRA~ep~~G~~~m~~~R~~------~-------------------------------------  117 (192)
T TIGR00567        81 YMLNVVAAPEGVPAAVLIRALEPLEGLELMRERRGR------S-------------------------------------  117 (192)
T ss_pred             EEEEEEECCCCCccEEEEEeccccCchHHHHHhcCC------C-------------------------------------
Confidence            99999998664  99999999999999999999864      1                                     


Q ss_pred             cCCCCCCCCCccccCCCCcccCChhHHHHHhcCCcccccCcCCCCCCceEEecCCCCCCCcEeeeccccccCcccccccc
Q psy11729        176 LSSNDWDQPNKKSKLQDRDLCNGPSKLCISMDITIEYLNKRHICESEEMWVQDLDCESNITIVESSRIGIGDFAKEWKAK  255 (281)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~L~nGPGKLc~ALgI~~~~~ng~~L~~~~~l~i~~~~~~~~~~I~~s~RIGI~~~~~ew~~~  255 (281)
                                    ...++|||||||||||||||++ +||.+|+++++|||+++..  +.+|++||||||++++ ||+++
T Consensus       118 --------------~~~~~L~nGPGkL~~ALgI~~~-~ng~~l~~~~~l~i~~~~~--~~~i~~t~RIGI~~a~-~~~~~  179 (192)
T TIGR00567       118 --------------LKDRELTNGPGKLCQALGITMS-FNGRDLIQPSALWLERGPL--EHSAPAGPRVGIDYAG-EWDIK  179 (192)
T ss_pred             --------------ccccccccCHHHHHHHhCCCHH-HCCCcccCCCceEEecCCC--CCceeeeCcccccCcc-ccccC
Confidence                          1236799999999999999999 9999998765799996642  3479999999999998 99999


Q ss_pred             ceeeEECCCeeec
Q psy11729        256 LLRFYILGNKCVS  268 (281)
Q Consensus       256 p~RFyi~gn~~VS  268 (281)
                      |||||++||||||
T Consensus       180 pwRf~v~~n~~VS  192 (192)
T TIGR00567       180 PWRFYVTGNPWVS  192 (192)
T ss_pred             CcEEEECCCcccC
Confidence            9999999999998

This families are based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). All proteins in this family for which the function is known are involved in the base excision repair of alkylation damage to DNA. The exact specificty of the type of alkylation damage repaired by each of these varies somewhat between species. Substrates include 3-methyl adenine, 7-methyl-guanaine, and 3-methyl-guanine.

>PF02245 Pur_DNA_glyco: Methylpurine-DNA glycosylase (MPG); InterPro: IPR003180 Methylpurine-DNA glycosylase is a base excision-repair protein	Back alignment and domain information

>PRK00802 3-methyladenine DNA glycosylase; Reviewed	Back alignment and domain information

>cd00540 AAG Alkyladenine DNA glycosylase (AAG), also known as 3-methyladenine DNA glycosylase, catalyzes the first step in base excision repair (BER) by cleaving damaged DNA bases within double-stranded DNA to produce an abasic site	Back alignment and domain information

>COG2094 Mpg 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG4486\|consensus	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		281
1bnk_A		216	Human 3-Methyladenine Dna Glycosylase Complexed To		6e-45
3qi5_A		219	Crystal Structure Of Human Alkyladenine Dna Glycosy		6e-45
1f4r_A		219	Crystal Structure Of The Human Aag Dna Repair Glyco		7e-45
1ewn_A		219	Crystal Structure Of The Human Aag Dna Repair Glyco		2e-44

>pdb|1BNK|A Chain A, Human 3-Methyladenine Dna Glycosylase Complexed To Dna Length = 216

Back alignment and structure

Iteration: 1

Score = 177 bits (449), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 98/258 (37%), Positives = 133/258 (51%), Gaps = 50/258 (19%) Query: 18 LDQAFFDQPCIDLANALLGKYLVRRLSCGTLLIGKIVETESYLGVEDRASHSYNNRRTPR 77 L FFDQP + LA A LG+ LVRRL GT L G+IVETE+YLG ED A+HS R+TPR Sbjct: 7 LGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPEDEAAHSRGGRQTPR 66 Query: 78 NEPMYMKPGTIYVYFTYGMYHCFNLSSQESGGAVLIRSLEPVHGLDIMNRLRNQFNENQN 137 N M+MKPGT+YVY YGMY C N+SSQ G VL+R+LEP+ GL+ M +R+Q + Sbjct: 67 NRGMFMKPGTLYVYIIYGMYFCMNISSQGDGACVLLRALEPLEGLETMRHVRSQLRKG-- 124 Query: 138 KSKRNNHLPNSQNNEETHSQSNRNSPAKKQKLIKSKQTLSSNDWDQPNKKSKLQDRDLCN 197 L+DR+LC+ Sbjct: 125 -----------------------------------------------TASRVLKDRELCS 137 Query: 198 GPSKLCISMDITIEYLNKRHICESEEMWVQDLDCESNITIVESSRIGIGDFAKEWKAKLL 257 GPSKLC ++ I + ++R + + E +W++ E + V ++ A EW K L Sbjct: 138 GPSKLCQALAINKSF-DQRDLAQDEAVWLERGPLEPSEPAVVAAARVGVGHAGEWARKPL 196 Query: 258 RFYILGNKCVSKTDKKME 275 RFY+ G+ VS D+ E Sbjct: 197 RFYVRGSPWVSVVDRVAE 214

PyMOL of 1bnk

>pdb|3QI5|A Chain A, Crystal Structure Of Human Alkyladenine Dna Glycosylase In Complex With 3,N4-Ethenocystosine Containing Duplex Dna Length = 219

Back alignment and structure

>pdb|1F4R|A Chain A, Crystal Structure Of The Human Aag Dna Repair Glycosylase Complexed With 1,N6-Ethenoadenine-Dna Length = 219

Back alignment and structure

>pdb|1EWN|A Chain A, Crystal Structure Of The Human Aag Dna Repair Glycosylase Complexed With 1,N6-Ethenoadenine-Dna Length = 219

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		281
3uby_A		219	DNA-3-methyladenine glycosylase; alkyladenine DNA	6e-66
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>3uby_A DNA-3-methyladenine glycosylase; alkyladenine DNA glycosylase fold, AAG, DNA repair, DNA BIND nucleus, hydrolase-DNA complex; HET: DNA EDC; 2.00A {Homo sapiens} PDB: 3qi5_A* 1f4r_A* 1f6o_A* 1ewn_A* 1bnk_A* Length = 219	Back alignment and structure

 Score =  204 bits (520), Expect = 6e-66
 Identities = 99/264 (37%), Positives = 136/264 (51%), Gaps = 52/264 (19%)

Query: 18  LDQAFFDQPCIDLANALLGKYLVRRLSCGTLLIGKIVETESYLGVEDRASHSYNNRRTPR 77
           L   FFDQP + LA A LG+ LVRRL  GT L G+IVETE+YLG ED A+HS   R+TPR
Sbjct: 7   LGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPEDEAAHSRGGRQTPR 66

Query: 78  NEPMYMKPGTIYVYFTYGMYHCFNLSSQESGGAVLIRSLEPVHGLDIMNRLRNQFNENQN 137
           N  M+MKPGT+YVY  YGMY C N+SSQ  G  VL+R+LEP+ GL+ M +LR+   +   
Sbjct: 67  NRGMFMKPGTLYVYIIYGMYFCMNISSQGDGACVLLRALEPLEGLETMRQLRSTLRKGTA 126

Query: 138 KSKRNNHLPNSQNNEETHSQSNRNSPAKKQKLIKSKQTLSSNDWDQPNKKSKLQDRDLCN 197
                                                                +DR+LC+
Sbjct: 127 SRVL-------------------------------------------------KDRELCS 137

Query: 198 GPSKLCISMDITIEYLNKRHICESEEMWVQDLD-CESNITIVESSRIGIGDFAKEWKAKL 256
           GPSKLC ++ I     ++R + + E +W++      S   +V ++R+G+   A EW  K 
Sbjct: 138 GPSKLCQALAINKS-FDQRDLAQDEAVWLERGPLEPSEPAVVAAARVGV-GHAGEWARKP 195

Query: 257 LRFYILGNKCVSKTDKKMESQMLS 280
           LRFY+ G+  VS  D+  E    +
Sbjct: 196 LRFYVRGSPWVSVVDRVAEQDTQA 219

PyMOL of 3uby

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		281
3uby_A		219	DNA-3-methyladenine glycosylase; alkyladenine DNA	100.0

>3uby_A DNA-3-methyladenine glycosylase; alkyladenine DNA glycosylase fold, AAG, DNA repair, DNA BIND nucleus, hydrolase-DNA complex; HET: DNA EDC; 2.00A {Homo sapiens} SCOP: b.46.1.2 PDB: 3qi5_A* 1f4r_A* 1f6o_A* 1ewn_A* 1bnk_A*	Back alignment and structure

Probab=100.00  E-value=4.2e-88  Score=606.51  Aligned_cols=215  Identities=47%  Similarity=0.848  Sum_probs=188.0

Q ss_pred             ccccCChhhhCCCHHHHHHhccCCeEEEEecCCcEEEEEEEEecccCCCCCCccccCCCCCCCccccccCCCceEEEEEc
Q psy11729         14 QANCLDQAFFDQPCIDLANALLGKYLVRRLSCGTLLIGKIVETESYLGVEDRASHSYNNRRTPRNEPMYMKPGTIYVYFT   93 (281)
Q Consensus        14 ~~~~L~~~Ff~r~~~~vA~~LLGk~Lvr~~~~G~~l~grIVETEAY~G~~D~AsHay~gkrT~Rn~~MFg~~G~~YVY~~   93 (281)
                      .+.+|+++||++|+++||++||||+|||++++|..++|||||||||+|++|+|||||+||+|+||++|||+|||+|||+|
T Consensus         3 ~~~~L~~~Ff~r~~~~vA~~LLG~~Lv~~~~~g~~~~grIVEtEAY~G~~D~AsHa~~GrrT~Rn~~MFg~pG~~YVY~~   82 (219)
T 3uby_A            3 HMTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVYII   82 (219)
T ss_dssp             CCCBCCHHHHCSCHHHHHHHTTTCEEEEECTTSCEEEEEEEEEEEECSTTCTTSTTGGGCCCSGGGGGGSSTTBEEEEEE
T ss_pred             CcccCCHHHHCCCHHHHHHHhCCCEEEEEcCCCCEEEEEEEEEeeccCCCCccccccCCCCCcccHHhcCCCcEEEEEEe
Confidence            45689999999999999999999999999988877899999999999999999999999889999999999999999999


Q ss_pred             cCceeeeeeeecCCCcEEEEcccccCCChHHHHHhhccccccccccccCCCCCCCCCCcccccccCCCChhhHHHhhhhh
Q psy11729         94 YGMYHCFNLSSQESGGAVLIRSLEPVHGLDIMNRLRNQFNENQNKSKRNNHLPNSQNNEETHSQSNRNSPAKKQKLIKSK  173 (281)
Q Consensus        94 YGmh~clNIvt~~~g~AVLIRAlEP~~G~~~M~~~R~~~~~~~~~~k~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~  173 (281)
                      |||||||||||+++|+||||||+||++|++.|+++|+.      +++++                               
T Consensus        83 YGmh~clNvv~~~~g~aVLIRA~EP~~G~e~m~~rR~~------~~~~~-------------------------------  125 (219)
T 3uby_A           83 YGMYFCMNISSQGDGACVLLRALEPLEGLETMRQLRST------LRKGT-------------------------------  125 (219)
T ss_dssp             TTTEEEEEEECSSTTCEEEEEEEEEEECHHHHHHHHHH------C-----------------------------------
T ss_pred             cCcEEEEEEEecCCCCEEEEeccccCccHHHHHHhccc------ccccc-------------------------------
Confidence            99999999999999999999999999999999999975      11100                               


Q ss_pred             cccCCCCCCCCCccccCCCCcccCChhHHHHHhcCCcccccCcCCCCCCceEEecCCCC-CCCcEeeeccccccCccccc
Q psy11729        174 QTLSSNDWDQPNKKSKLQDRDLCNGPSKLCISMDITIEYLNKRHICESEEMWVQDLDCE-SNITIVESSRIGIGDFAKEW  252 (281)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~L~nGPGKLc~ALgI~~~~~ng~~L~~~~~l~i~~~~~~-~~~~I~~s~RIGI~~~~~ew  252 (281)
                                  .++..++++|||||||||||||||++ +||.||+.++.|||+++... .+.+|+++|||||++++ ||
T Consensus       126 ------------~~~~~~~~~L~~GPGkL~~ALgI~~~-~ng~dL~~~~~l~l~~~~~~~~~~~I~~~pRIGI~~ag-e~  191 (219)
T 3uby_A          126 ------------ASRVLKDRELCSGPSKLCQALAINKS-FDQRDLAQDEAVWLERGPLEPSEPAVVAAARVGVGHAG-EW  191 (219)
T ss_dssp             ----------------CCGGGTSSSHHHHHHHTTCCGG-GTTCBTTTCSSEEEECCSCCBCGGGEEEECCSCC--CT-TT
T ss_pred             ------------cccccccchhcCCHHHHHHHhCCCHH-HCCCccCCCCceEEecCCCCCCCCCEEEeCcccCCCCc-cc
Confidence                        00012467899999999999999999 99999997667999987532 24589999999999998 99


Q ss_pred             cccceeeEECCCeeecCCchhhhhhhh
Q psy11729        253 KAKLLRFYILGNKCVSKTDKKMESQML  279 (281)
Q Consensus       253 ~~~p~RFyi~gn~~VS~~~k~~~~~~~  279 (281)
                      +++||||||+||||||+.+|++|+++.
T Consensus       192 ~~~PwRF~i~g~p~VS~~r~~~~~~~~  218 (219)
T 3uby_A          192 ARKPLRFYVRGSPWVSVVDRVAEQDTQ  218 (219)
T ss_dssp             TTSCCEEEETTCTTCSCCCTTTC----
T ss_pred             ccCCceeEeCCCCeECCCcccchhhhc
Confidence            999999999999999999999999874

PyMOL of 3uby

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		281
d1ewna_		214	b.46.1.2 (A:) 3-methyladenine DNA glycosylase (AAG	4e-78

>d1ewna_ b.46.1.2 (A:) 3-methyladenine DNA glycosylase (AAG, ANPG, MPG) {Human (Homo sapiens) [TaxId: 9606]} Length = 214	Back information, alignment and structure


class: All beta proteins
fold: FMT C-terminal domain-like
superfamily: FMT C-terminal domain-like
family: 3-methyladenine DNA glycosylase (AAG, ANPG, MPG)
domain: 3-methyladenine DNA glycosylase (AAG, ANPG, MPG)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  234 bits (597), Expect = 4e-78
 Identities = 99/259 (38%), Positives = 136/259 (52%), Gaps = 52/259 (20%)

Query: 18  LDQAFFDQPCIDLANALLGKYLVRRLSCGTLLIGKIVETESYLGVEDRASHSYNNRRTPR 77
           L   FFDQP + LA A LG+ LVRRL  GT L G+IVET++YLG ED A+HS   R+TPR
Sbjct: 5   LGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETQAYLGPEDEAAHSRGGRQTPR 64

Query: 78  NEPMYMKPGTIYVYFTYGMYHCFNLSSQESGGAVLIRSLEPVHGLDIMNRLRNQFNENQN 137
           N  M+MKPGT+YVY  YGMY C N+SSQ  G  VL+R+LEP+ GL+ M +LR+   +   
Sbjct: 65  NRGMFMKPGTLYVYIIYGMYFCMNISSQGDGACVLLRALEPLEGLETMRQLRSTLRKGTA 124

Query: 138 KSKRNNHLPNSQNNEETHSQSNRNSPAKKQKLIKSKQTLSSNDWDQPNKKSKLQDRDLCN 197
                                                                +DR+LC+
Sbjct: 125 SRVL-------------------------------------------------KDRELCS 135

Query: 198 GPSKLCISMDITIEYLNKRHICESEEMWVQDLDCE-SNITIVESSRIGIGDFAKEWKAKL 256
           GPSKLC ++ I     ++R + + E +W++    E S   +V ++R+G+   A EW  K 
Sbjct: 136 GPSKLCQALAINKS-FDQRDLAQDEAVWLERGPLEPSEPAVVAAARVGV-GHAGEWARKP 193

Query: 257 LRFYILGNKCVSKTDKKME 275
           LRFY+ G+  VS  D+  E
Sbjct: 194 LRFYVRGSPWVSVVDRVAE 212

PyMOL of d1ewna_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		281
d1ewna_		214	3-methyladenine DNA glycosylase (AAG, ANPG, MPG) {	100.0

>d1ewna_ b.46.1.2 (A:) 3-methyladenine DNA glycosylase (AAG, ANPG, MPG) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All beta proteins
fold: FMT C-terminal domain-like
superfamily: FMT C-terminal domain-like
family: 3-methyladenine DNA glycosylase (AAG, ANPG, MPG)
domain: 3-methyladenine DNA glycosylase (AAG, ANPG, MPG)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.9e-88  Score=599.86  Aligned_cols=213  Identities=47%  Similarity=0.861  Sum_probs=190.4

Q ss_pred             ccccCChhhhCCCHHHHHHhccCCeEEEEecCCcEEEEEEEEecccCCCCCCccccCCCCCCCccccccCCCceEEEEEc
Q psy11729         14 QANCLDQAFFDQPCIDLANALLGKYLVRRLSCGTLLIGKIVETESYLGVEDRASHSYNNRRTPRNEPMYMKPGTIYVYFT   93 (281)
Q Consensus        14 ~~~~L~~~Ff~r~~~~vA~~LLGk~Lvr~~~~G~~l~grIVETEAY~G~~D~AsHay~gkrT~Rn~~MFg~~G~~YVY~~   93 (281)
                      |+++|+++||++|+++||++||||+|||++++|..++|||||||||+|++|+|||||+||+|+||++||++|||+|||+|
T Consensus         1 ~m~~L~~~Ff~r~~~~vA~~LLG~~Lv~~~~~g~~~~g~IvEtEAY~G~~D~A~Ha~~gr~T~Rn~~Mf~~~G~~YVY~~   80 (214)
T d1ewna_           1 HLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETQAYLGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVYII   80 (214)
T ss_dssp             CTTBCCHHHHCSBHHHHHHHHTTCEEEEECTTSCEEEEEEEEEEEECSTTCTTSTTGGGCCCSSSGGGGSSTTBEEEEEE
T ss_pred             CCccCCHHHhCCCHHHHHHHhCCCEEEEEcCCCCEEEEEEEEEeccCCCCCchhhccCCCCCchhHHhcCCCceEEEEEe
Confidence            45689999999999999999999999999999988899999999999999999999999889999999999999999999


Q ss_pred             cCceeeeeeeecCCCcEEEEcccccCCChHHHHHhhccccccccccccCCCCCCCCCCcccccccCCCChhhHHHhhhhh
Q psy11729         94 YGMYHCFNLSSQESGGAVLIRSLEPVHGLDIMNRLRNQFNENQNKSKRNNHLPNSQNNEETHSQSNRNSPAKKQKLIKSK  173 (281)
Q Consensus        94 YGmh~clNIvt~~~g~AVLIRAlEP~~G~~~M~~~R~~~~~~~~~~k~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~  173 (281)
                      |||||||||||+++++||||||+||++|++.|+++|+...++..                                    
T Consensus        81 YG~h~~lNiv~~g~~~aVLIRa~eP~~G~~~m~~~R~~~~~~~~------------------------------------  124 (214)
T d1ewna_          81 YGMYFCMNISSQGDGACVLLRALEPLEGLETMRQLRSTLRKGTA------------------------------------  124 (214)
T ss_dssp             TTTEEEEEEECBSTTCEEEEEEEEEEECHHHHHHHTTC------------------------------------------
T ss_pred             cCceEEEEEEecCCCceeEEeeccccccHHHHHHhhcccccccc------------------------------------
Confidence            99999999999999999999999999999999999986211100                                    


Q ss_pred             cccCCCCCCCCCccccCCCCcccCChhHHHHHhcCCcccccCcCCCCCCceEEecCCCC-CCCcEeeeccccccCccccc
Q psy11729        174 QTLSSNDWDQPNKKSKLQDRDLCNGPSKLCISMDITIEYLNKRHICESEEMWVQDLDCE-SNITIVESSRIGIGDFAKEW  252 (281)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~L~nGPGKLc~ALgI~~~~~ng~~L~~~~~l~i~~~~~~-~~~~I~~s~RIGI~~~~~ew  252 (281)
                                   .+..+.++|||||||||||||||++ +||.+|++++.+||++++.. .+.+|++||||||++++ ||
T Consensus       125 -------------~~~~~~~~L~~GPGkL~~ALgI~~~-~~g~~l~~~~~l~i~~~~~~~~~~~I~~tpRIGI~~a~-e~  189 (214)
T d1ewna_         125 -------------SRVLKDRELCSGPSKLCQALAINKS-FDQRDLAQDEAVWLERGPLEPSEPAVVAAARVGVGHAG-EW  189 (214)
T ss_dssp             ---------------CCCGGGTSSSHHHHHHHTTCCGG-GTTCBTTSCSSEEEECCC------CEEEECCTTCCSCS-HH
T ss_pred             -------------ccccccccccCChHHHHHHhCCcHh-hCCCccCCCCceEEeCCCCCCCCCCEEEcCCCcccCcc-cc
Confidence                         0122567899999999999999999 99999998878999987643 34579999999999998 89


Q ss_pred             cccceeeEECCCeeecCCchhhhhh
Q psy11729        253 KAKLLRFYILGNKCVSKTDKKMESQ  277 (281)
Q Consensus       253 ~~~p~RFyi~gn~~VS~~~k~~~~~  277 (281)
                      +++|||||++||||||+++|++|.+
T Consensus       190 ~~~pwRF~i~~np~VS~~~r~~~~~  214 (214)
T d1ewna_         190 ARKPLRFYVRGSPWVSVVDRVAEQD  214 (214)
T ss_dssp             HHSCCEEEETTCTTCSSCCHHHHTC
T ss_pred             ccCCceEEeCCCceEcCCccccccC
Confidence            9999999999999999999999975

PyMOL of d1ewna_