Diaphorina citri psyllid: psy1206

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-
MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRKAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEVADPETIEFIDLCILLGCDYCDSIRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEIADPETIELVADVAPSSIRESRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGELNKRMEKREDAQKALAKAQEQGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREEKRKSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQYQY
cccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccCCccccHHHHHHHHHHHcccEEEEEccccccccccccEEEEccccccccccccccEEHHHHHccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHcccHHHHHHHHccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccHHHHHHHHccHHHHHHHHccccccccccccHHHHHHHHccccccccccccHHcccccccccccHHHHccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHcccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccccccEEccccHHHHHHHHHHHcccEEEcccccccccccccccccccccEEEEEEEEEEEEEEEEEccccccccccccc
MTLKWSDPDEDGLVKYLCGDKNFAEDRI*****KLLKARSSTTQGRLDSFFTIRREEKRKAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEVADPETIEFIDLCILLGCDYCDSIRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEIADPETIELVADVAPSSIRESRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSG*********************************GLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREEKRKSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQYQ*
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MTLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSSTTQGRLDSFFTIRREEKRKAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSNILLRHMTFSEARKLPVQEFHLEKVLEGMELSHEEFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEVADPETIEFIDLCILLGCDYCDSIRGIGPKRAIELLYSFIDLCILLGCDYCDSIRGIGPKRAIELIKEHRSIEKILENIDTKKYTVPEGWLYKEARELFRHPEIADPETIELVADVAPSSIRESRKICIDASMSLYQFLIAVRSEGNQLMSVDGEPTSHLMGTFYRTIRLVEHGLKPIYVFDGKPPTLKSGExxxxxxxxxxxxxxxxxxxxxGKLKWSDPDEDGLVKYLCGDKNFAEDRIRNGAKKLLKARSTTTQGRLDSFFTIRREEKRKSRCQYQCQYQCQYQCQYQCQCQCQCQCQCQCQCQYQYQYQYQYQYQYQYQYQCQCQCQCQCQYQY

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

No confident close homologs for annotation transfering were detected in SWISSPROT

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0006284 [BP]base-excision repairprobableGO:0090304, GO:0034641, GO:0006807, GO:1901360, GO:0006139, GO:0051716, GO:0044260, GO:0071704, GO:0044699, GO:0006281, GO:0009987, GO:0006725, GO:0006974, GO:0006950, GO:0044763, GO:0008152, GO:0046483, GO:0044238, GO:0050896, GO:0044237, GO:0043170, GO:0033554, GO:0006259, GO:0008150
GO:0004523 [MF]ribonuclease H activityprobableGO:0016787, GO:0003824, GO:0004518, GO:0004519, GO:0004540, GO:0004521, GO:0016788, GO:0016893, GO:0016891, GO:0003674
GO:0005634 [CC]nucleusprobableGO:0043231, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0043229, GO:0044424, GO:0043227, GO:0043226
GO:0005739 [CC]mitochondrionprobableGO:0005737, GO:0043231, GO:0044464, GO:0043229, GO:0005623, GO:0005622, GO:0005575, GO:0044444, GO:0044424, GO:0043227, GO:0043226
GO:0017108 [MF]5'-flap endonuclease activityprobableGO:0004518, GO:0016787, GO:0004536, GO:0004519, GO:0003824, GO:0004520, GO:0016788, GO:0016893, GO:0003674, GO:0048256, GO:0016888
GO:0043137 [BP]DNA replication, removal of RNA primerprobableGO:0090304, GO:0044249, GO:0034641, GO:0006807, GO:0034645, GO:1901576, GO:1901360, GO:1901361, GO:0006139, GO:1901575, GO:0044265, GO:0044260, GO:0033567, GO:0071704, GO:0006260, GO:0006261, GO:0006401, GO:0022616, GO:0044238, GO:0009987, GO:0006725, GO:0046700, GO:0006259, GO:0009058, GO:0009059, GO:0008150, GO:0008152, GO:0034655, GO:0009056, GO:0009057, GO:0046483, GO:0016070, GO:0044248, GO:0044270, GO:0006273, GO:0006271, GO:0044237, GO:0043170, GO:0019439
GO:0008409 [MF]5'-3' exonuclease activityprobableGO:0016787, GO:0004518, GO:0004527, GO:0016788, GO:0003824, GO:0003674

Prediction of Enzyme Commission Number ?

No confident prediction of EC number!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 3Q8K, chain A
Confidence level:very confident
Coverage over the Query: 13-171,275-302,407-458
View the alignment between query and template
View the model in PyMOL
Template: 3Q8K, chain A
Confidence level:very confident
Coverage over the Query: 304-446
View the alignment between query and template
View the model in PyMOL
Template: 3QE9, chain Y
Confidence level:very confident
Coverage over the Query: 10-227
View the alignment between query and template
View the model in PyMOL
Template: 4GLX, chain A
Confidence level:probable
Coverage over the Query: 143-176,218-281
View the alignment between query and template
View the model in PyMOL
Template: 1IGR, chain A
Confidence level:probable
Coverage over the Query: 456-529
View the alignment between query and template
View the model in PyMOL