Diaphorina citri psyllid: psy12402

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-----
MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEEDEEDRGGVRHSNGTSLAPKPTPAVEKETNR
cEEEEEEccccccccEEccccccHHccccccccHHHHHHHHHHHcccccccccccccccEEEEEccccccccccccEEEEEcccHHHHHHHHcccccccEEEEEEEcccccccccccccEEEEEEEEcccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccCEEEEEEEEEcccEECccccEEEEEEEEccHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccccccccccEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHcccc
MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSFETR******************************************************
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MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEEDEEDRGGVRHSNGTSLAPKPTPAVEKETNR

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
tRNA pseudouridine synthase A, mitochondrial Converts specific uridines to PSI in a number of tRNA substrates. Acts on positions 27/28 in the anticodon stem and also positions 34 and 36 in the anticodon of an intron containing tRNA. Involved in regulation of nuclear receptor activity possibly through pseudouridylation of SRA1 RNA.confidentQ4KM92
tRNA pseudouridine(27/28) synthase Mitochondrial-specific pseudouridine synthase catalyzing the formation of pseudouridine at positions 27 and 28 in the anticodon stem and loop of mitochondrial transfer RNAs.confidentP53167
tRNA pseudouridine synthase A, mitochondrial Converts specific uridines to PSI in a number of tRNA substrates. Acts on positions 27/28 in the anticodon stem and also positions 34 and 36 in the anticodon of an intron containing tRNA. Involved in regulation of nuclear receptor activity possibly through pseudouridylation of SRA1 RNA.confidentQ9Y606

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0031119 [BP]tRNA pseudouridine synthesisprobableGO:0009451, GO:0090304, GO:0034641, GO:0006807, GO:0034660, GO:0001522, GO:1901360, GO:0034470, GO:0006139, GO:0044260, GO:0071704, GO:0010467, GO:0006400, GO:0008033, GO:0009987, GO:0006725, GO:0043412, GO:0008150, GO:0008152, GO:0046483, GO:0016070, GO:0044238, GO:0044237, GO:0043170, GO:0006399, GO:0006396
GO:0005667 [CC]transcription factor complexprobableGO:0043234, GO:0044446, GO:0032991, GO:0005575, GO:0031981, GO:0043233, GO:0005634, GO:0044464, GO:0005623, GO:0005622, GO:0005654, GO:0070013, GO:0043229, GO:0044428, GO:0031974, GO:0044424, GO:0044451, GO:0043227, GO:0043226, GO:0044422, GO:0043231
GO:0003677 [MF]DNA bindingprobableGO:0097159, GO:0003674, GO:1901363, GO:0003676, GO:0005488
GO:0030374 [MF]ligand-dependent nuclear receptor transcription coactivator activityprobableGO:0003674, GO:0003713, GO:0003712, GO:0000989, GO:0000988
GO:0005737 [CC]cytoplasmprobableGO:0044424, GO:0005575, GO:0044464, GO:0005623, GO:0005622
GO:0005730 [CC]nucleolusprobableGO:0005575, GO:0043232, GO:0031981, GO:0043233, GO:0005634, GO:0044464, GO:0031974, GO:0005622, GO:0044446, GO:0070013, GO:0043229, GO:0043228, GO:0044428, GO:0005623, GO:0044424, GO:0043227, GO:0043226, GO:0044422, GO:0043231
GO:0009982 [MF]pseudouridine synthase activityprobableGO:0016866, GO:0003674, GO:0016853, GO:0003824
GO:0045944 [BP]positive regulation of transcription from RNA polymerase II promoterprobableGO:0009893, GO:0019222, GO:0031328, GO:0031326, GO:0031325, GO:2001141, GO:0031323, GO:0010628, GO:0050789, GO:0080090, GO:0010604, GO:0051171, GO:0009891, GO:2000112, GO:0019219, GO:0010556, GO:0065007, GO:0048518, GO:0010468, GO:0045935, GO:0060255, GO:0009889, GO:0050794, GO:0008150, GO:0045893, GO:0051173, GO:0051252, GO:0051254, GO:0006355, GO:0010557, GO:0006357, GO:0048522

Prediction of Enzyme Commission Number ?

EC Number ?Description ?Confidence Level ?
5.-.-.-Isomerases.probable
5.4.-.-Intramolecular transferases (mutases).probable
5.4.99.-Transferring other groups.probable
5.4.99.12tRNA pseudouridine(38-40) synthase.probable

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1VS3, chain A
Confidence level:very confident
Coverage over the Query: 1-16,27-46,57-261
View the alignment between query and template
View the model in PyMOL