Psyllid ID: psy12402

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-----
MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEEDEEDRGGVRHSNGTSLAPKPTPAVEKETNR
cEEEEEEccccccccEEccccccHHccccccccHHHHHHHHHHHcccccccccccccccEEEEEccccccccccccEEEEEcccHHHHHHHHcccccccEEEEEEEcccccccccccccEEEEEEEEcccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccEEEEEEEEEEcccEEEccccEEEEEEEEccHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccccccccccEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHccc
cEEEEEEccccEcEEEEccccccccccccccccHHHHHHHHHHHcccccHHcccccccEEEEEEcEccccccEcEEEEEEcccHHHHHHHHHHcccccEEEEEEEEcccccccccccccEEEEEEEEccccccHHccccEEEccHHcHHHHHHHHHHHHcccccccEEcccccccccccEEEEEEEEEccEEcccccEEEEEEEHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccEEEEEEEcccHccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccc
MAMMFAYSgvgyfglqSKYLFFLIFCRNQGMKTIEGDIMEALFKAgfvtedsfntpqniqFQRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTkgfnsknncnartysytcptyafatpqdtkddfrltpDQFNFLQALLKQYegthnfhnftskrkpldpscsryimsfdceqpfvkDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKtfgldqfdlpmapglgLLLEQVHYDLYnqkygqdgmheslhfhEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANgeelqevtdgeeeedeedrggvrhsngtslapkptpaveketnr
MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKLPEEANKeainehlpeqirILSIKRVTKGfnsknncnartysyTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNfhnftskrkplDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANgeelqevtdgeeeedeedrggvrhsngtslapkptpaveketnr
MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSFETRaakaalaaaNgeelqevtdgeeeedeedrggVRHSNGTSLAPKPTPAVEKETNR
***MFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAA****GVSALKQIVSLK*********INEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSFETRA*****************************************************
MAMMFAYSGVGYFGLQSKYLFFL*FCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSK*****PS**RYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSFETR******************************************************
MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSFETRAA****************************************************
MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHS**********************************************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEEDEEDRGGVRHSNGTSLAPKPTPAVEKETNR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query375 2.2.26 [Sep-21-2011]
Q9Y606427 tRNA pseudouridine syntha yes N/A 0.896 0.786 0.450 8e-87
Q9WU56423 tRNA pseudouridine syntha yes N/A 0.896 0.794 0.454 2e-86
Q4KM92423 tRNA pseudouridine syntha yes N/A 0.896 0.794 0.451 9e-86
Q6CWQ8553 tRNA pseudouridine syntha yes N/A 0.917 0.622 0.309 1e-44
P53167370 tRNA pseudouridine(27/28) yes N/A 0.661 0.670 0.319 1e-34
Q6CC39528 tRNA pseudouridine syntha yes N/A 0.429 0.304 0.425 2e-32
O74451413 Putative tRNA pseudouridi yes N/A 0.736 0.668 0.275 2e-30
Q59S63450 tRNA pseudouridine syntha N/A N/A 0.376 0.313 0.443 2e-27
Q6FV05549 tRNA pseudouridine syntha no N/A 0.432 0.295 0.369 2e-25
Q755C8528 tRNA pseudouridine syntha yes N/A 0.432 0.306 0.369 4e-25
>sp|Q9Y606|TRUA_HUMAN tRNA pseudouridine synthase A, mitochondrial OS=Homo sapiens GN=PUS1 PE=1 SV=3 Back     alignment and function desciption
 Score =  320 bits (821), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 160/355 (45%), Positives = 232/355 (65%), Gaps = 19/355 (5%)

Query: 1   MAMMFAYSGVGYFGLQSKYLFFLIFCRNQG---MKTIEGDIMEALFKAGFVTEDSFNTPQ 57
           + ++ AYSG GY G+Q          RN G    KTIE D++ AL ++G + E+     +
Sbjct: 86  IVLLMAYSGKGYHGMQ----------RNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMR 135

Query: 58  NIQFQRAARTDKGVSALKQIVSLKLPE-EANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
            + FQR ARTDKGVSA  Q+VSLK+   +   E IN HLP  IRIL +KRVT GFNSKN 
Sbjct: 136 KMSFQRCARTDKGVSAAGQVVSLKVWLIDDILEKINSHLPSHIRILGLKRVTGGFNSKNR 195

Query: 117 CNARTYSYTCPTYAFA-TPQDTKDD-FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPL 174
           C+ARTY Y  PT+AFA   +D +D+ +RL+ +    +  LL  Y+GTHNFHNFTS++ P 
Sbjct: 196 CDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQ 255

Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
           DPS  RYI+   CE+PFV++GLE   +++KGQSFM+HQIRKMVG+ +AI +G+  + ++E
Sbjct: 256 DPSACRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLE 315

Query: 235 KTFGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILP 294
           +++G ++ D+P APGLGL+LE+VH++ YNQ++G DG+HE L + + + +V  F+ + I P
Sbjct: 316 RSWGTEKVDVPKAPGLGLVLERVHFEKYNQRFGNDGLHEPLDWAQEEGKVAAFKEEHIYP 375

Query: 295 YLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEEDEED 349
            ++ TE  E+ M  WL  L  H+F   +A A  A   G ++    +G E + + D
Sbjct: 376 TIIGTERDERSMAQWLSTLPIHNF---SATALTAGGTGAKVPSPLEGSEGDGDTD 427
Converts specific uridines to PSI in a number of tRNA substrates. Acts on positions 27/28 in the anticodon stem and also positions 34 and 36 in the anticodon of an intron containing tRNA. Involved in regulation of nuclear receptor activity possibly through pseudouridylation of SRA1 RNA.
Homo sapiens (taxid: 9606)
EC: 5EC: .EC: 4EC: .EC: 9EC: 9EC: .EC: 1EC: 2
>sp|Q9WU56|TRUA_MOUSE tRNA pseudouridine synthase A, mitochondrial OS=Mus musculus GN=Pus1 PE=1 SV=2 Back     alignment and function description
>sp|Q4KM92|TRUA_RAT tRNA pseudouridine synthase A, mitochondrial OS=Rattus norvegicus GN=Pus1 PE=2 SV=2 Back     alignment and function description
>sp|Q6CWQ8|PUS1_KLULA tRNA pseudouridine synthase 1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PUS1 PE=3 SV=1 Back     alignment and function description
>sp|P53167|PUS2_YEAST tRNA pseudouridine(27/28) synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PUS2 PE=1 SV=4 Back     alignment and function description
>sp|Q6CC39|PUS1_YARLI tRNA pseudouridine synthase 1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=PUS1 PE=3 SV=1 Back     alignment and function description
>sp|O74451|YCG6_SCHPO Putative tRNA pseudouridine synthase C16C4.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC16C4.06c PE=3 SV=2 Back     alignment and function description
>sp|Q59S63|PUS1_CANAL tRNA pseudouridine synthase 1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PUS1 PE=3 SV=1 Back     alignment and function description
>sp|Q6FV05|PUS1_CANGA tRNA pseudouridine synthase 1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=PUS1 PE=3 SV=1 Back     alignment and function description
>sp|Q755C8|PUS1_ASHGO tRNA pseudouridine synthase 1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=PUS1 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query375
193706844441 PREDICTED: tRNA pseudouridine synthase A 0.936 0.795 0.505 1e-104
157115880455 pseudouridylate synthase [Aedes aegypti] 0.826 0.681 0.509 6e-94
332029057398 tRNA pseudouridine synthase A [Acromyrme 0.826 0.778 0.501 7e-94
118782859451 AGAP002409-PA [Anopheles gambiae str. PE 0.821 0.682 0.515 4e-93
195113035401 GI22173 [Drosophila mojavensis] gi|19391 0.84 0.785 0.512 8e-92
170072176431 tRNA pseudouridine synthase A [Culex qui 0.824 0.716 0.504 1e-91
194744150410 GF18329 [Drosophila ananassae] gi|190627 0.837 0.765 0.507 1e-91
312385729443 hypothetical protein AND_00413 [Anophele 0.824 0.697 0.506 1e-91
156538138437 PREDICTED: tRNA pseudouridine synthase A 0.872 0.748 0.469 1e-90
195353947411 GM23177 [Drosophila sechellia] gi|194127 0.890 0.812 0.484 1e-90
>gi|193706844|ref|XP_001945291.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/372 (50%), Positives = 255/372 (68%), Gaps = 21/372 (5%)

Query: 2   AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
           A++ AYSG+GY GLQ          RN+G+KT+E +++ AL     +T++ F   Q +QF
Sbjct: 69  AILLAYSGLGYLGLQ----------RNKGVKTVEEELLLALKSKNLITDEGFEQIQTMQF 118

Query: 62  QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
           QRAARTDKGVSAL+QI+SL LPE+ +K+ IN  LPEQIR+L I+RVTKGFNSKN+C+ RT
Sbjct: 119 QRAARTDKGVSALRQIISLLLPEDVDKQVINTALPEQIRVLDIRRVTKGFNSKNSCDGRT 178

Query: 122 YSYTCPTYAFATPQDTKD-DFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSR 180
           YSYTCPT+AFA  + T D  +R+     + +  ++K + G HN+HN+TSK+KP DPS  R
Sbjct: 179 YSYTCPTFAFAPAETTIDFSYRIDATVIDRINEVVKSFLGCHNYHNYTSKKKPGDPSAQR 238

Query: 181 YIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFGLD 240
           Y++SF C++PF KDG+ELI+L ++GQSFMLHQIRKMVGV +AI RG    D+IE+ +  D
Sbjct: 239 YMVSFYCDKPFEKDGVELISLYVRGQSFMLHQIRKMVGVIIAICRGVAKHDVIERAWQPD 298

Query: 241 QFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYLVKTE 300
           + DLP+APGLGL+LE+VHYD YN K+G DGMHE L F E++ +V+EFR K+ILP ++K E
Sbjct: 299 RLDLPIAPGLGLVLEEVHYDKYNGKFGNDGMHERLDFVELNDQVSEFRAKYILPTIIKVE 358

Query: 301 ITEKPMLAWLELLADHSFETRAAKAAL----------AAANGEELQEVTDGEEEEDEEDR 350
             E  M  WLE L  H+FE R     L            A+ +   E+ + EE+   +  
Sbjct: 359 KEESSMQLWLEQLPLHTFEVRTEHRHLRTDVNEINSPGLASLQAAAELIEKEEQHAIDTN 418

Query: 351 GGVRHSNGTSLA 362
           G V   N ++LA
Sbjct: 419 GEVPPDNLSTLA 430

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|157115880|ref|XP_001658327.1| pseudouridylate synthase [Aedes aegypti] gi|108876737|gb|EAT40962.1| AAEL007354-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|332029057|gb|EGI69071.1| tRNA pseudouridine synthase A [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|118782859|ref|XP_312543.3| AGAP002409-PA [Anopheles gambiae str. PEST] gi|116129767|gb|EAA08062.3| AGAP002409-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|195113035|ref|XP_002001075.1| GI22173 [Drosophila mojavensis] gi|193917669|gb|EDW16536.1| GI22173 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|170072176|ref|XP_001870114.1| tRNA pseudouridine synthase A [Culex quinquefasciatus] gi|167868280|gb|EDS31663.1| tRNA pseudouridine synthase A [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|194744150|ref|XP_001954558.1| GF18329 [Drosophila ananassae] gi|190627595|gb|EDV43119.1| GF18329 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|312385729|gb|EFR30155.1| hypothetical protein AND_00413 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|156538138|ref|XP_001608257.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|195353947|ref|XP_002043463.1| GM23177 [Drosophila sechellia] gi|194127604|gb|EDW49647.1| GM23177 [Drosophila sechellia] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query375
FB|FBgn0038811442 CG4159 [Drosophila melanogaste 0.826 0.701 0.501 2.5e-81
UNIPROTKB|F1NZ90405 PUS1 "tRNA pseudouridine synth 0.826 0.765 0.469 1.1e-78
RGD|1311871423 Pus1 "pseudouridylate synthase 0.818 0.725 0.473 2.7e-77
UNIPROTKB|Q4KM92423 Pus1 "tRNA pseudouridine synth 0.818 0.725 0.473 2.7e-77
UNIPROTKB|G8JLB3384 PUS1 "tRNA pseudouridine synth 0.818 0.799 0.473 3.4e-77
UNIPROTKB|Q9Y606427 PUS1 "tRNA pseudouridine synth 0.818 0.718 0.473 3.4e-77
MGI|MGI:1929237423 Pus1 "pseudouridine synthase 1 0.818 0.725 0.473 3.4e-77
ZFIN|ZDB-GENE-041212-26412 pus1 "pseudouridine synthase 1 0.829 0.754 0.473 9e-77
UNIPROTKB|F1RFR2433 PUS1 "tRNA pseudouridine synth 0.818 0.709 0.476 3.1e-76
UNIPROTKB|E1BDL3433 PUS1 "tRNA pseudouridine synth 0.818 0.709 0.473 3.9e-76
FB|FBgn0038811 CG4159 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 816 (292.3 bits), Expect = 2.5e-81, P = 2.5e-81
 Identities = 163/325 (50%), Positives = 222/325 (68%)

Query:     2 AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
             A++ +Y G  Y+G+Q          RN GM+TIE ++ +A+ K  ++TEDSF   Q   F
Sbjct:   105 AILLSYCGANYYGMQ----------RNPGMQTIEEELFKAMLKHKWITEDSFEQIQISCF 154

Query:    62 QRAARTDKGVSALKQIVSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNART 121
             QRAARTDKGVSA +Q+ S+KLPEE + EA N  LP+QIR+  ++RVTKGFN+K+ CNART
Sbjct:   155 QRAARTDKGVSAARQVCSVKLPEELDLEAFNADLPQQIRLFGVERVTKGFNAKDQCNART 214

Query:   122 YSYTCPTYAFATPQDTKDD----FRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPS 177
             Y+YT PT AFA  ++  DD    FR++P+    ++  LK YEGT NFHNFTSK+  LDPS
Sbjct:   215 YTYTLPTVAFAPFEEKVDDVHDTFRISPELLQKVKETLKLYEGTKNFHNFTSKKSFLDPS 274

Query:   178 CSRYIMSFDCEQPFVK-DGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKT 236
               R+IMSF   +PF     +E +TLK+KGQSFMLHQIRKMVG+A+AI RG T+   +E+ 
Sbjct:   275 SKRFIMSFTSSEPFRSPQDIEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTAATLERA 334

Query:   237 FGLDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHEVDKEVNEFRHKFILPYL 296
                ++ DLPMAPGLGL+L+ VHY+ YN +YG+DG+H  L +   + +V EF  + I   +
Sbjct:   335 LTEERLDLPMAPGLGLVLDTVHYERYNDRYGKDGIHNPLTWQAQEAQVQEFIEREIFSQI 394

Query:   297 VKTEITEKPMLAWLELLADHSFETR 321
              KTE  ++ ML W+  L  HS++TR
Sbjct:   395 YKTEAEQRNMLDWIGTLHYHSYDTR 419
GO:0004730 "pseudouridylate synthase activity" evidence=ISS
GO:0001522 "pseudouridine synthesis" evidence=IEA
GO:0009982 "pseudouridine synthase activity" evidence=IEA
GO:0003723 "RNA binding" evidence=IEA
UNIPROTKB|F1NZ90 PUS1 "tRNA pseudouridine synthase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|1311871 Pus1 "pseudouridylate synthase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q4KM92 Pus1 "tRNA pseudouridine synthase A, mitochondrial" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|G8JLB3 PUS1 "tRNA pseudouridine synthase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y606 PUS1 "tRNA pseudouridine synthase A, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1929237 Pus1 "pseudouridine synthase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041212-26 pus1 "pseudouridine synthase 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1RFR2 PUS1 "tRNA pseudouridine synthase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1BDL3 PUS1 "tRNA pseudouridine synthase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q4KM92TRUA_RAT5, ., 4, ., 9, 9, ., 1, 20.45170.8960.7943yesN/A
P53167PUS2_YEAST5, ., 4, ., 9, 9, ., 4, 40.31910.66130.6702yesN/A
Q9Y606TRUA_HUMAN5, ., 4, ., 9, 9, ., 1, 20.45070.8960.7868yesN/A
Q6CWQ8PUS1_KLULA5, ., 4, ., 9, 9, ., -0.30930.91730.6220yesN/A
Q9WU56TRUA_MOUSE5, ., 4, ., 9, 9, ., 1, 20.45450.8960.7943yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer5.4.99.120.824
3rd Layer5.4.990.766

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query375
cd02568245 cd02568, PseudoU_synth_PUS1_PUS2, Pseudouridine sy 1e-110
COG0101266 COG0101, TruA, Pseudouridylate synthase [Translati 3e-56
TIGR00071227 TIGR00071, hisT_truA, tRNA pseudouridine(38-40) sy 8e-44
cd00497215 cd00497, PseudoU_synth_TruA_like, Pseudouridine sy 3e-42
PRK00021244 PRK00021, truA, tRNA pseudouridine synthase A; Val 6e-30
cd02570239 cd02570, PseudoU_synth_EcTruA, Eukaryotic and bact 1e-29
cd02569256 cd02569, PseudoU_synth_ScPus3, Pseudouridine synth 2e-29
PLN03078513 PLN03078, PLN03078, Putative tRNA pseudouridine sy 1e-23
cd02866219 cd02866, PseudoU_synth_TruA_Archea, Archeal pseudo 5e-22
PRK14589265 PRK14589, PRK14589, tRNA pseudouridine synthase AC 1e-19
PLN03078513 PLN03078, PLN03078, Putative tRNA pseudouridine sy 4e-16
pfam01416103 pfam01416, PseudoU_synth_1, tRNA pseudouridine syn 7e-16
PRK14588272 PRK14588, PRK14588, tRNA pseudouridine synthase AC 3e-15
PRK12434245 PRK12434, PRK12434, tRNA pseudouridine synthase A; 7e-15
PRK14586245 PRK14586, PRK14586, tRNA pseudouridine synthase AC 2e-14
PRK14587256 PRK14587, PRK14587, tRNA pseudouridine synthase AC 2e-10
pfam01416103 pfam01416, PseudoU_synth_1, tRNA pseudouridine syn 0.002
>gnl|CDD|211335 cd02568, PseudoU_synth_PUS1_PUS2, Pseudouridine synthase, PUS1/ PUS2 like Back     alignment and domain information 
 Score =  323 bits (829), Expect = e-110
 Identities = 127/269 (47%), Positives = 166/269 (61%), Gaps = 36/269 (13%)

Query: 3   MMFAYSGVGYFGLQSKYLFFLIFCRNQGM-KTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
           ++F Y G GY G+Q           N G  KTIEG++  ALFKAG ++E +   P+ I F
Sbjct: 1   LLFGYCGTGYHGMQ----------YNPGAYKTIEGELERALFKAGAISESNAGDPKKIGF 50

Query: 62  QRAARTDKGVSALKQIVSLKLP---------EEANKEAINEHLPEQIRILSIKRVTKGFN 112
            RAARTDKGV A + +VSLK+           E   E +N HLP  IR+  I RVTK FN
Sbjct: 51  SRAARTDKGVHAARNVVSLKVIIDDPEGLGILEDLVEKLNSHLPSDIRVFGITRVTKSFN 110

Query: 113 SKNNCNARTYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRK 172
           ++  C++RTY Y  PT+A  T Q                  +LK+Y GTHNFHNFT K+K
Sbjct: 111 ARKACDSRTYEYLLPTFALETLQR--------------FNEILKEYVGTHNFHNFTVKKK 156

Query: 173 PLDPSCSRYIMSFDCEQPFV-KDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKD 231
             DPS +R+I SF   +PFV ++GLE I++KI GQSFMLHQIRKM+G+A+AI RG   + 
Sbjct: 157 FEDPSANRFIKSFYVSEPFVIEEGLEWISIKIHGQSFMLHQIRKMIGLAIAIVRGGAPES 216

Query: 232 LIEKTFGLDQFD-LPMAPGLGLLLEQVHY 259
           LIE +F  D+   +P+APGLGLLLE+ H+
Sbjct: 217 LIELSFNKDKIIIIPLAPGLGLLLERPHF 245

This group consists of eukaryotic pseudouridine synthases similar to Saccharomyces cerevisiae Pus1p, S. cerevisiae Pus2p, Caenorhabditis elegans Pus1p and human PUS1. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. S. cerevisiae Pus1p catalyzes the formation of psi34 and psi36 in the intron-containing tRNAIle, psi35 in the intron-containing tRNATyr, psi27 and/or psi28 in several yeast cytoplasmic tRNAs and, psi44 in U2 small nuclear RNA (U2 snRNA). The presence of the intron is required for the formation of psi 34, 35 and 36. In addition S. cerevisiae PUS1 makes are psi 26, 65 and 67. C. elegans Pus1p does not modify psi44 in U2 snRNA. Mouse Pus1p makes psi27/28 in pre- tRNASer , tRNAVal and tRNAIle, psi 34/36 in tRNAIle and, psi 32 and potentially 67 in tRNAVal. Psi44 in U2 snRNA and psi32 in tRNAs are highly phylogenetically conserved. Psi 26,27,28,34,35,36,65 and 67 in tRNAs are less highly conserved. Mouse Pus1p regulates nuclear receptor activity through pseudouridylation of Steroid Receptor RNA Activator. Missense mutation in human PUS1 causes mitochondrial myopathy and sideroblastic anemia (MLASA). Length = 245
>gnl|CDD|223179 COG0101, TruA, Pseudouridylate synthase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232810 TIGR00071, hisT_truA, tRNA pseudouridine(38-40) synthase Back     alignment and domain information
>gnl|CDD|211322 cd00497, PseudoU_synth_TruA_like, Pseudouridine synthase, TruA family Back     alignment and domain information
>gnl|CDD|234577 PRK00021, truA, tRNA pseudouridine synthase A; Validated Back     alignment and domain information
>gnl|CDD|211337 cd02570, PseudoU_synth_EcTruA, Eukaryotic and bacterial pseudouridine synthases similar to E Back     alignment and domain information
>gnl|CDD|211336 cd02569, PseudoU_synth_ScPus3, Pseudouridine synthase, Saccharomyces cerevisiae Pus3 like Back     alignment and domain information
>gnl|CDD|215562 PLN03078, PLN03078, Putative tRNA pseudouridine synthase; Provisional Back     alignment and domain information
>gnl|CDD|211343 cd02866, PseudoU_synth_TruA_Archea, Archeal pseudouridine synthases Back     alignment and domain information
>gnl|CDD|237759 PRK14589, PRK14589, tRNA pseudouridine synthase ACD; Provisional Back     alignment and domain information
>gnl|CDD|215562 PLN03078, PLN03078, Putative tRNA pseudouridine synthase; Provisional Back     alignment and domain information
>gnl|CDD|216487 pfam01416, PseudoU_synth_1, tRNA pseudouridine synthase Back     alignment and domain information
>gnl|CDD|173052 PRK14588, PRK14588, tRNA pseudouridine synthase ACD; Provisional Back     alignment and domain information
>gnl|CDD|171495 PRK12434, PRK12434, tRNA pseudouridine synthase A; Reviewed Back     alignment and domain information
>gnl|CDD|173050 PRK14586, PRK14586, tRNA pseudouridine synthase ACD; Provisional Back     alignment and domain information
>gnl|CDD|173051 PRK14587, PRK14587, tRNA pseudouridine synthase ACD; Provisional Back     alignment and domain information
>gnl|CDD|216487 pfam01416, PseudoU_synth_1, tRNA pseudouridine synthase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 375
KOG2553|consensus416 100.0
PLN03078513 Putative tRNA pseudouridine synthase; Provisional 100.0
COG0101266 TruA Pseudouridylate synthase [Translation, riboso 100.0
PRK00021244 truA tRNA pseudouridine synthase A; Validated 100.0
PRK12434245 tRNA pseudouridine synthase A; Reviewed 100.0
cd02570239 PseudoU_synth_EcTruA PseudoU_synth_EcTruA: Pseudou 100.0
PRK14588272 tRNA pseudouridine synthase ACD; Provisional 100.0
PRK14586245 tRNA pseudouridine synthase ACD; Provisional 100.0
cd02568245 PseudoU_synth_PUS1_PUS2 PseudoU_synth_PUS1_PUS2: P 100.0
cd02866221 PseudoU_synth_TruA_Archea PseudoU_synth_archea: Ps 100.0
PRK14589265 tRNA pseudouridine synthase ACD; Provisional 100.0
TIGR00071227 hisT_truA pseudouridylate synthase I. universal so 100.0
cd00497224 PseudoU_synth_TruA_like PseudoU_synth_TruA: Pseudo 100.0
cd02569256 PseudoU_synth_ScPus3 PseudoU_synth_ScPus3-like: Ps 100.0
PRK14587256 tRNA pseudouridine synthase ACD; Provisional 100.0
KOG2554|consensus425 100.0
KOG4393|consensus295 100.0
PF01416105 PseudoU_synth_1: tRNA pseudouridine synthase; Inte 99.84
PF01416105 PseudoU_synth_1: tRNA pseudouridine synthase; Inte 98.15
PF10105187 DUF2344: Uncharacterized protein conserved in bact 95.56
cd0129187 PseudoU_synth PseudoU_synth: Pseudouridine synthas 92.2
TIGR01213388 conserved hypothetical protein TIGR01213. Members 85.69
>KOG2553|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.1e-90  Score=679.64  Aligned_cols=334  Identities=42%  Similarity=0.753  Sum_probs=307.5

Q ss_pred             CEEEEEEeCCCccccccccccccccccCCCCCCHHHHHHHHHHHccCcccCCCCCCcceeeEeeeccCccccccccEEEE
Q psy12402          1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSL   80 (375)
Q Consensus         1 val~i~Y~Gt~Y~G~Q~q~~~~~~~~~qp~~~TVE~~Le~AL~~~g~I~~~~~~~~~~i~~~rasRTDkGVHA~~qvvs~   80 (375)
                      ||+++||+|++|||||          +||+.+||||+|++||.++|+|+++|+++++++.|.||+||||||||++||||+
T Consensus        39 Vail~gY~G~gY~GmQ----------~N~~~kTIEgeL~~al~~aGaI~e~n~~dpkk~~~~raARTDKGVhA~~nviSl  108 (416)
T KOG2553|consen   39 VAILLGYCGTGYHGMQ----------YNPPLKTIEGELFEALFKAGAISESNAGDPKKIGFARAARTDKGVHAAGNVISL  108 (416)
T ss_pred             EEEEEEeccCCcccee----------cCCCCCchHHHHHHHHHHcCCcccccccChHHhhhHHhhccccchhhhhheeEE
Confidence            6899999999999999          999999999999999999999999999999999999999999999999999999


Q ss_pred             EcC--chHHHHHHHhcCCCCeEEEeEEecCCCCcccccCCceEEEEEccCCCCCCCCCC---------------------
Q psy12402         81 KLP--EEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDT---------------------  137 (375)
Q Consensus        81 ~l~--~~~~~~~LN~~LP~dIrV~~i~~V~~~F~aR~~c~~R~Y~Y~lp~~~~~~~~~~---------------------  137 (375)
                      +++  ...++..||.+||++||||++.||+++||||..|++|+|+|+||+++|.++...                     
T Consensus       109 K~~~~~~~lv~~lN~~Lp~~IRv~~v~r~~k~F~pr~~CdsR~YeYllPtfal~~p~~~~~~~~~~~~~~e~~~~f~~~~  188 (416)
T KOG2553|consen  109 KLELDDPELVEKLNEILPEQIRVWGVKRVTKSFNPRKQCDSRTYEYLLPTFALAPPKPSSLLEVDIQYDKEFEKEFWNTY  188 (416)
T ss_pred             EEeeCcHHHHHHHhhhCCcceEEEEEEecCCCCCccccccceeEEEecceeeecCCCCccHHHhhhhhhhhhhhhhcccc
Confidence            984  456999999999999999999999999999999999999999999999876543                     


Q ss_pred             ---------------CCceeCChhhHHHHHHHHhhccCccccccccccccCCCCCCcEEEEEEEEecCccc--CCccEEE
Q psy12402        138 ---------------KDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVK--DGLELIT  200 (375)
Q Consensus       138 ---------------~~~~~~~~~~l~~~~~al~~f~GtHdF~nFt~~~~~~~~s~~R~I~~~~v~~~~~~--~~~~~v~  200 (375)
                                     ...|+++++.++.++++|+.|+|||||||||..+...|+++.|+|.+|.|++||+.  .+.+||.
T Consensus       189 ~~~~~~~~s~~~~~~~~~yr~s~~~l~~~~~~ls~Y~GthnFHNfT~~~~~~dpss~R~I~s~~~~~pfv~~~~~~e~V~  268 (416)
T KOG2553|consen  189 PLSAKERLSGQDRKTESGYRLSEEKLEVFNTILSKYVGTHNFHNFTTGKDFTDPSSNRFIKSFTVSEPFVINDEGVEFVK  268 (416)
T ss_pred             chhhhhhhcccccccccceeeCHHHHHHHHHHHHHhhcccccceecccCCCCCccccceeeEEEecCcceeccCCceEEE
Confidence                           35789999999999999999999999999999999999999999999999999987  6899999


Q ss_pred             EEEEeCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHhc-CCCCCCCCCCCCCeeeeeeeccccccccCCCCCCccccccc
Q psy12402        201 LKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKTFG-LDQFDLPMAPGLGLLLEQVHYDLYNQKYGQDGMHESLHFHE  279 (375)
Q Consensus       201 i~I~G~sFL~hQIRkMVg~li~v~rG~~~~~~i~~~l~-~~~~~~p~AP~~GL~L~~v~Y~~yn~k~~~~~~~~~i~~~~  279 (375)
                      |.|+|||||+||||||||++|+|.|+.+|.+.|+.+|+ ..++++|+||++||+|+++.|+.||++++..+ |++++|++
T Consensus       269 i~i~GQSFMLHQIRKMVglav~i~R~~~p~~~i~~af~~~~ri~IP~AP~~gLlL~~~~F~~yn~~~~~~~-~e~i~~~~  347 (416)
T KOG2553|consen  269 IKIHGQSFMLHQIRKMVGLAVLIVRSGAPASTIQRAFNKEHKINIPKAPGEGLLLEEPHFESYNRKFRPSG-HEEIDWDD  347 (416)
T ss_pred             EEEEcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHhhCCCccccccCCCcceEEeecccccccccccCCCC-cCCcCHHH
Confidence            99999999999999999999999999999999999998 46899999999999999999999999997766 99999999


Q ss_pred             hHHHHHHHHHHhhHHHHHHhhhccchHHHHHHHhhcCCcchhhhHhhHhhhCCccccccCCCCccc
Q psy12402        280 VDKEVNEFRHKFILPYLVKTEITEKPMLAWLELLADHSFETRAAKAALAAANGEELQEVTDGEEEE  345 (375)
Q Consensus       280 ~~~~~~~Fk~~~i~~~I~~~e~~~~~~~~wl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (375)
                      +++++++||..+||++|+.+|.++++|..||..|++|+..+.......+....+.+-..+.+|++|
T Consensus       348 ~e~ei~~fk~~~Iy~~I~~~E~~~~~f~~wl~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~~  413 (416)
T KOG2553|consen  348 YEEEIDQFKEKHIYSHIIKTEEKEGVFAIWLSSLNQRDNYPDLRKGSNEFLTDKVIVGKKIDEDSE  413 (416)
T ss_pred             HHHHHHHHHHHHhchHHhhhHhhhhhHHHHHHHHhhhcchhhhhccccccccccceeccccccccc
Confidence            999999999999999999999999999999999999975555454455555555555555444443

>PLN03078 Putative tRNA pseudouridine synthase; Provisional Back     alignment and domain information
>COG0101 TruA Pseudouridylate synthase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00021 truA tRNA pseudouridine synthase A; Validated Back     alignment and domain information
>PRK12434 tRNA pseudouridine synthase A; Reviewed Back     alignment and domain information
>cd02570 PseudoU_synth_EcTruA PseudoU_synth_EcTruA: Pseudouridine synthase, Escherichia coli TruA like Back     alignment and domain information
>PRK14588 tRNA pseudouridine synthase ACD; Provisional Back     alignment and domain information
>PRK14586 tRNA pseudouridine synthase ACD; Provisional Back     alignment and domain information
>cd02568 PseudoU_synth_PUS1_PUS2 PseudoU_synth_PUS1_PUS2: Pseudouridine synthase, PUS1/ PUS2 like Back     alignment and domain information
>cd02866 PseudoU_synth_TruA_Archea PseudoU_synth_archea: Pseudouridine synthase, Back     alignment and domain information
>PRK14589 tRNA pseudouridine synthase ACD; Provisional Back     alignment and domain information
>TIGR00071 hisT_truA pseudouridylate synthase I Back     alignment and domain information
>cd00497 PseudoU_synth_TruA_like PseudoU_synth_TruA: Pseudouridine synthase, TruA family Back     alignment and domain information
>cd02569 PseudoU_synth_ScPus3 PseudoU_synth_ScPus3-like: Pseudouridine synthase, Saccharomyces cerevisiae Pus3 like Back     alignment and domain information
>PRK14587 tRNA pseudouridine synthase ACD; Provisional Back     alignment and domain information
>KOG2554|consensus Back     alignment and domain information
>KOG4393|consensus Back     alignment and domain information
>PF01416 PseudoU_synth_1: tRNA pseudouridine synthase; InterPro: IPR020097 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones Back     alignment and domain information
>PF01416 PseudoU_synth_1: tRNA pseudouridine synthase; InterPro: IPR020097 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones Back     alignment and domain information
>PF10105 DUF2344: Uncharacterized protein conserved in bacteria (DUF2344); InterPro: IPR018768 This domain, found in various hypothetical bacterial proteins and Radical Sam domain proteins, has no known function Back     alignment and domain information
>cd01291 PseudoU_synth PseudoU_synth: Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi) Back     alignment and domain information
>TIGR01213 conserved hypothetical protein TIGR01213 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query375
1vs3_A249 Crystal Structure Of The Trna Pseudouridine Synthas 4e-12
2nqp_A270 Crystal Structure Of Pseudoudirinde Synthase Trua I 2e-04
1dj0_A264 The Crystal Structure Of E. Coli Pseudouridine Synt 3e-04
>pdb|1VS3|A Chain A, Crystal Structure Of The Trna Pseudouridine Synthase Trua From Thermus Thermophilus Hb8 Length = 249 Back     alignment and structure 
Iteration: 1

 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 112/267 (41%), Gaps = 32/267 (11%)
Query: 1   MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQ 60
           + ++  Y G  + GLQ +          +G++T++G++  AL   G +       P+ + 
Sbjct: 4   LLLLCEYDGTLFAGLQRQ---------GRGLRTVQGELERALPGIGAL-------PKAVA 47
Query: 61  FQRAARTDKGVSALKQI----VSLKLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNN 116
              A RTD GV AL       V   +P E   EA+N  LPE ++++  + V   F+++ +
Sbjct: 48  ---AGRTDAGVHALAMPFHVDVESAIPVEKVPEALNRLLPEDLKVVGAREVAPDFHARKD 104
Query: 117 CNARTYSYTCPTYAFATP-QDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKR-KPL 174
              R Y Y        +P    +  +   P     ++  L    G HNF  F  +  +P 
Sbjct: 105 ALWRAYRYRILVRPHPSPLLRHRALWVRRPLDLEAMEEALSLLLGRHNFLGFAKEETRP- 163
Query: 175 DPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE 234
                R ++    +    + GLE + L  +G+SF+  Q+R MVG  + +  G    + ++
Sbjct: 164 ---GERELLEARLQVAEGEAGLE-VRLYFRGKSFLRGQVRGMVGTLLEVGLGKRPPESLK 219
Query: 235 KTFGLDQFDL--PMAPGLGLLLEQVHY 259
                    L  P AP  GL   +  Y
Sbjct: 220 AILKTADRRLAGPTAPAHGLYFVEAAY 246
>pdb|2NQP|A Chain A, Crystal Structure Of Pseudoudirinde Synthase Trua In Complex With Leucyl Trna Length = 270 Back     alignment and structure
>pdb|1DJ0|A Chain A, The Crystal Structure Of E. Coli Pseudouridine Synthase I At 1.5 Angstrom Resolution Length = 264 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query375
1vs3_A249 TRNA pseudouridine synthase A; TRUA, tRNA modifica 100.0
1dj0_A264 Pseudouridine synthase I; alpha/beta fold, RNA-bin 100.0
>1vs3_A TRNA pseudouridine synthase A; TRUA, tRNA modification, structural NPPSFA, national project on protein structural and function analyses; 2.25A {Thermus thermophilus} Back     alignment and structure
Probab=100.00  E-value=7e-72  Score=529.84  Aligned_cols=237  Identities=24%  Similarity=0.377  Sum_probs=216.4

Q ss_pred             CEEEEEEeCCCccccccccccccccccCCCC-CCHHHHHHHHHHHccCcccCCCCCCcceeeEeeeccCccccccccEEE
Q psy12402          1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGM-KTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVS   79 (375)
Q Consensus         1 val~i~Y~Gt~Y~G~Q~q~~~~~~~~~qp~~-~TVE~~Le~AL~~~g~I~~~~~~~~~~i~~~rasRTDkGVHA~~qvvs   79 (375)
                      ++|.|+|+||+|+|||          +||+. +|||++||+||.++|          +++.+.+||||||||||++||+|
T Consensus         4 ~~l~i~YdGt~y~GwQ----------~Q~~~~~TVq~~Le~AL~~~~----------~~v~~~~agRTDaGVHA~gqv~~   63 (249)
T 1vs3_A            4 LLLLCEYDGTLFAGLQ----------RQGRGLRTVQGELERALPGIG----------ALPKAVAAGRTDAGVHALAMPFH   63 (249)
T ss_dssp             EEEEEEECGGGCSBSS----------CCCTTCCCHHHHHHHHGGGGT----------BCSCCEESSCCBTTCEEEEEEEE
T ss_pred             EEEEEEEECCCceeEe----------ECCCCCCCHHHHHHHHHHHcC----------CcceEEEeccCcCCcCccccEEE
Confidence            5899999999999999          99999 999999999999962          46899999999999999999999


Q ss_pred             EEcC----chHHHHHHHhcCCCCeEEEeEEecCCCCcccccCCceEEEEEccCCCCCCCCCCCCceeCC-hhhHHHHHHH
Q psy12402         80 LKLP----EEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRLT-PDQFNFLQAL  154 (375)
Q Consensus        80 ~~l~----~~~~~~~LN~~LP~dIrV~~i~~V~~~F~aR~~c~~R~Y~Y~lp~~~~~~~~~~~~~~~~~-~~~l~~~~~a  154 (375)
                      |+++    .+.++.+||++||+||+|+++.+|+++||||++|++|+|+|+|+.....+++.+...|.+. +.|+++|++|
T Consensus        64 f~~~~~~~~~~~~~~lN~~LP~dI~V~~~~~v~~~FhARf~a~~R~Y~Y~i~~~~~~~~~~~~~~~~~~~~ldi~~m~~a  143 (249)
T 1vs3_A           64 VDVESAIPVEKVPEALNRLLPEDLKVVGAREVAPDFHARKDALWRAYRYRILVRPHPSPLLRHRALWVRRPLDLEAMEEA  143 (249)
T ss_dssp             EEECSCCCGGGHHHHHHHHSCTTEEEEEEEEECTTCCTTTTCSEEEEEEEEEECSSCCTTTTTTSEEECSCCCHHHHHHH
T ss_pred             EEECCCCCHHHHHHHHHhcCCcCEEEEEEEECCCCCCcccccccEEEEEEEccCCCCChhhCCeeEEeCCCCCHHHHHHH
Confidence            9984    4578999999999999999999999999999999999999999998888888887888775 7899999999


Q ss_pred             HhhccCccccccccccccCCCCCCcEEEEEEEEecCcccCCccEEEEEEEeCcchhhHHHHHHHHHHHHHcCCCCHHHHH
Q psy12402        155 LKQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIE  234 (375)
Q Consensus       155 l~~f~GtHdF~nFt~~~~~~~~s~~R~I~~~~v~~~~~~~~~~~v~i~I~G~sFL~hQIRkMVg~li~v~rG~~~~~~i~  234 (375)
                      ++.|+|+|||+|||+.+.   ++++|+|.++++.+++..+ .+++.|+|+|+||||||||+|||+|++||+|++++++|+
T Consensus       144 a~~l~G~HDF~~F~~~~~---~~~vR~I~~~~v~~~~~~~-~~~i~~~i~g~~FL~~mVR~mvG~l~~vg~g~~~~~~i~  219 (249)
T 1vs3_A          144 LSLLLGRHNFLGFAKEET---RPGERELLEARLQVAEGEA-GLEVRLYFRGKSFLRGQVRGMVGTLLEVGLGKRPPESLK  219 (249)
T ss_dssp             HHHHSEEEEGGGGCSSCC---SCCEEEEEEEEEEEEECSS-SEEEEEEEEESCCCTTHHHHHHHHHHHHHHSSSCGGGHH
T ss_pred             HHHhcCceeHHheecCCC---CCCCcEEEEEEEEeccccC-CCEEEEEEEEChHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence            999999999999997654   7889999999997543223 479999999999999999999999999999999999999


Q ss_pred             HHhcCC--CCCCCCCCCCCeeeeeeeccc
Q psy12402        235 KTFGLD--QFDLPMAPGLGLLLEQVHYDL  261 (375)
Q Consensus       235 ~~l~~~--~~~~p~AP~~GL~L~~v~Y~~  261 (375)
                      .+|+..  +..+|+|||+||+|++|.|+.
T Consensus       220 ~~L~~~~r~~~~~~APa~GL~L~~v~Y~~  248 (249)
T 1vs3_A          220 AILKTADRRLAGPTAPAHGLYFVEAAYPE  248 (249)
T ss_dssp             HHHHHCCGGGSCCCCCGGGEEEEEEECCC
T ss_pred             HHHhCCCcccCcCccCCCCcEEeeeeCCC
Confidence            999853  478999999999999999963
>1dj0_A Pseudouridine synthase I; alpha/beta fold, RNA-binding motif, RNA-modifying enzyme, lyase; 1.50A {Escherichia coli} SCOP: d.265.1.1 PDB: 2nqp_A 2nr0_A 2nre_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 375
d1dj0a_264 d.265.1.1 (A:) Pseudouridine synthase I TruA {Esch 3e-21
>d1dj0a_ d.265.1.1 (A:) Pseudouridine synthase I TruA {Escherichia coli [TaxId: 562]} Length = 264 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Pseudouridine synthase
superfamily: Pseudouridine synthase
family: Pseudouridine synthase I TruA
domain: Pseudouridine synthase I TruA
species: Escherichia coli [TaxId: 562]

 Score = 90.0 bits (222), Expect = 3e-21
 Identities = 48/266 (18%), Positives = 86/266 (32%), Gaps = 32/266 (12%)

Query: 2   AMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQF 61
           A+   Y G  Y+G Q          R   +++++  + +AL +            + I  
Sbjct: 7   ALGIEYDGSKYYGWQ----------RQNEVRSVQEKLEKALSQV---------ANEPITV 47

Query: 62  QRAARTDKGVSALKQIVSL----KLPEEANKEAINEHLPEQIRILSIKRVTKGFNSKNNC 117
             A RTD GV    Q+V         + A    +N +LP  I +  +K V   F+++ + 
Sbjct: 48  FCAGRTDAGVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSA 107

Query: 118 NAR-TYSYTCPTYAFATPQDTKDDFRLTPDQFNFLQALLKQYEGTHNFHNFTSKRKPLDP 176
            AR                         P     +    +   G ++F +F + +     
Sbjct: 108 TARRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRT 167

Query: 177 SCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEKT 236
                +                + + IK  +F+ H +R +VG  M +      +  I + 
Sbjct: 168 PWRNVMHINVTRHGPY------VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAEL 221

Query: 237 FGLDQFDL--PMAPGLGLLLEQVHYD 260
                  L    A   GL L  V Y 
Sbjct: 222 LAAKDRTLAAATAKAEGLYLVAVDYP 247

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query375
d1dj0a_264 Pseudouridine synthase I TruA {Escherichia coli [T 100.0
>d1dj0a_ d.265.1.1 (A:) Pseudouridine synthase I TruA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Pseudouridine synthase
superfamily: Pseudouridine synthase
family: Pseudouridine synthase I TruA
domain: Pseudouridine synthase I TruA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.9e-66  Score=494.09  Aligned_cols=236  Identities=22%  Similarity=0.351  Sum_probs=211.3

Q ss_pred             CEEEEEEeCCCccccccccccccccccCCCCCCHHHHHHHHHHHccCcccCCCCCCcceeeEeeeccCccccccccEEEE
Q psy12402          1 MAMMFAYSGVGYFGLQSKYLFFLIFCRNQGMKTIEGDIMEALFKAGFVTEDSFNTPQNIQFQRAARTDKGVSALKQIVSL   80 (375)
Q Consensus         1 val~i~Y~Gt~Y~G~Q~q~~~~~~~~~qp~~~TVE~~Le~AL~~~g~I~~~~~~~~~~i~~~rasRTDkGVHA~~qvvs~   80 (375)
                      +||.|+|+||+|+|||          +||+.+|||++|++||.+++   .      +++.+.+||||||||||++||++|
T Consensus         6 ~al~i~Y~Gt~f~G~Q----------~Q~~~~TVq~~Le~aL~~~~---~------~~~~~~~agRTD~GVhA~~qv~~~   66 (264)
T d1dj0a_           6 IALGIEYDGSKYYGWQ----------RQNEVRSVQEKLEKALSQVA---N------EPITVFCAGRTDAGVHGTGQVVHF   66 (264)
T ss_dssp             EEEEEEECCTTSSCSC----------CTTCSSCHHHHHHHHHHHHH---T------SCCCEEESSCCCTTCEEEEEEEEE
T ss_pred             EEEEEEEECCCeeeEe----------ECcCCCCHHHHHHHHHHHhh---C------CCeEEEEeecccCCcceeeEEEEE
Confidence            5899999999999999          89999999999999999963   2      578999999999999999999999


Q ss_pred             EcC----chHHHHHHHhcCCCCeEEEeEEecCCCCcccccCCceEEEEEccCCCCCCCCCCCCceeC-ChhhHHHHHHHH
Q psy12402         81 KLP----EEANKEAINEHLPEQIRILSIKRVTKGFNSKNNCNARTYSYTCPTYAFATPQDTKDDFRL-TPDQFNFLQALL  155 (375)
Q Consensus        81 ~l~----~~~~~~~LN~~LP~dIrV~~i~~V~~~F~aR~~c~~R~Y~Y~lp~~~~~~~~~~~~~~~~-~~~~l~~~~~al  155 (375)
                      +++    ...+...||++||+||+|+++.+|+.+||||++|.+|+|+|+++.....++......|.+ ...|+++|++|+
T Consensus        67 ~~~~~~~~~~~~~~lN~~Lp~dI~i~~~~~v~~~F~aR~~a~~r~Y~Y~i~~~~~~~~~~~~~~~~~~~~ld~~~m~~a~  146 (264)
T d1dj0a_          67 ETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAA  146 (264)
T ss_dssp             EESCCCCHHHHHHHHHHTSCTTEEEEEEEECCTTCCTTTTCCEEEEEEEEECSSSCCCTTTTSSEECCSCCCHHHHHHHH
T ss_pred             eeccchhhhhhhcccccccccccccccceeccccccchhhhhhcccceeeccccccccccccccccccCCcchHHHHHHH
Confidence            984    456899999999999999999999999999999999999999998887766665555554 367899999999


Q ss_pred             hhccCccccccccccccCCCCCCcEEEEEEEEecCcccCCccEEEEEEEeCcchhhHHHHHHHHHHHHHcCCCCHHHHHH
Q psy12402        156 KQYEGTHNFHNFTSKRKPLDPSCSRYIMSFDCEQPFVKDGLELITLKIKGQSFMLHQIRKMVGVAMAIARGFTSKDLIEK  235 (375)
Q Consensus       156 ~~f~GtHdF~nFt~~~~~~~~s~~R~I~~~~v~~~~~~~~~~~v~i~I~G~sFL~hQIRkMVg~li~v~rG~~~~~~i~~  235 (375)
                      +.|+|+|||+|||+.+. ...+.+|+|..+.+.+     ..+++.|+|+|+||||||||+|||+|++||+|+++++.|+.
T Consensus       147 ~~~~G~hdF~~F~~~~~-~~~~~~r~i~~~~~~~-----~~~~i~i~i~g~sFL~~qVR~mvg~ll~vg~g~~~~~~i~~  220 (264)
T d1dj0a_         147 QCLLGENDFTSFRAVQC-QSRTPWRNVMHINVTR-----HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAE  220 (264)
T ss_dssp             GGGCEEEECGGGCCTTC-CCSCCEEEEEEEEEEE-----ETTEEEEEEEESCCCTTHHHHHHHHHHHHHTTSSCTTHHHH
T ss_pred             hhccCcccccccccccc-cCCCccccccccccee-----cCcEEEEEechhHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            99999999999987654 3567889999988764     24789999999999999999999999999999999999999


Q ss_pred             HhcCC--CCCCCCCCCCCeeeeeeeccc
Q psy12402        236 TFGLD--QFDLPMAPGLGLLLEQVHYDL  261 (375)
Q Consensus       236 ~l~~~--~~~~p~AP~~GL~L~~v~Y~~  261 (375)
                      +|+..  ....|+|||+||+|++|.|+.
T Consensus       221 ~L~~~~r~~~~~~APa~GL~L~~V~Y~~  248 (264)
T d1dj0a_         221 LLAAKDRTLAAATAKAEGLYLVAVDYPD  248 (264)
T ss_dssp             HHHHCCGGGSCCCCCSTTEEEEEEECCG
T ss_pred             HHhcCCcccCccccCCCCCEEcccccCc
Confidence            99743  467899999999999999953