Diaphorina citri psyllid: psy12603


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-
DIGDNVITIPEVVNEVTSKRQIRRLVVLPYDLQIKEADPDSISFVTEFSKKTGDYPSLSSTDIKVIALTYELHKQHIGVDSINTEPISRQISYINHSVLTDKEVLAGFYSPSRGCTFNVDGGYLEGLCRGFKNGILKQTDYLNLVQCESLEELEDHTPEVLQKIDHDEEEHSDDSGNEDDDDGGEWITPSNLKQAQRTMDARQYEEKPLVVSCVTTDFAMQNVLKQMGLNVVALDGRLIRELRTFILRCYACYKTTSIMTKVFCPKCGYKTLKRVAVSVDEQGKQKIHINLKRPLTARGKKFSLPTFKGGKHANNPIVAEDQPVPDQRPTRLGRTKTNALDPDYIAGMSPFAVHDINSKSAMLGIRNNGKNNEVKYWMYKNPNAVKRKAKK
ccccEEECcHHHHHHHccHHHHHHHHHccccEEECcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccEEEEEccHHHHHHHHHHcccEEEEccccccEEcccEEEEccccccccccccccccccccccccEEEEEEEcccccEEEEEcccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
DIGDNVITIPEVVNEVTSKRQIRRLVVLPYDLQIKEADPDSISFVTEFSKKTGDYPSLSSTDIKVIALTYELHKQHIGVD**********************************************************************************************************ITPSNLK*************KPLVVSCVTTDFAMQNVLKQMGLNVVALDGRLIRELRTFILRCYACYKTTSIMTKVFCPKCGYKTLKRVAVSVDEQGKQKIHINLKRPLTARGKKFSLPT*****HANNPIVAEDQP*******************DYIAGMSPFAVHDINSKSAMLGIR*****NEVKYW**************
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DIGDNVITIPEVVNEVTSKRQIRRLVVLPYDLQIKEADPDSISFVTEFSKKTGDYPSLSSTDIKVIALTYELHKQHIGVDSINTEPISRQISYINHSVLTDKEVLAGFYSPSRGCTFNVDGGYLEGLCRGFKNGILKQTDYLNLVQCESLEELEDHTPEVLQKIDHDEEEHSDDSGNEDDDDGGEWITPSNLKQAQRTMDARQYEEKPLVVSCVTTDFAMQNVLKQMGLNVVALDGRLIRELRTFILRCYACYKTTSIMTKVFCPKCGYKTLKRVAVSVDEQGKQKIHINLKRPLTARGKKFSLPTFKGGKHANNPIVAEDQPVPDQRPTRLGRTKTNALDPDYIAGMSPFAVHDINSKSAMLGIRNNGKNNEVKYWMYKNPNAVKRKAKK

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
RNA-binding protein NOB1 May play a role in mRNA degradation.confidentQ3T042
RNA-binding protein NOB1 May play a role in mRNA degradation.confidentQ9ULX3
20S-pre-rRNA D-site endonuclease nob1 Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm.confidentQ9UTK0

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0044763 [BP]single-organism cellular processprobableGO:0009987, GO:0008150, GO:0044699
GO:0003674 [MF]molecular_functionprobable
GO:0005737 [CC]cytoplasmprobableGO:0044424, GO:0005575, GO:0044464, GO:0005623, GO:0005622

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 2LCQ, chain A
Confidence level:very confident
Coverage over the Query: 5-74,212-275
View the alignment between query and template
View the model in PyMOL
Template: 2CON, chain A
Confidence level:very confident
Coverage over the Query: 233-309
View the alignment between query and template
View the model in PyMOL