Psyllid ID: psy12603

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-
DIGDNVITIPEVVNEVTSKRQIRRLVVLPYDLQIKEADPDSISFVTEFSKKTGDYPSLSSTDIKVIALTYELHKQHIGVDSINTEPISRQISYINHSVLTDKEVLAGFYSPSRGCTFNVDGGYLEGLCRGFKNGILKQTDYLNLVQCESLEELEDHTPEVLQKIDHDEEEHSDDSGNEDDDDGGEWITPSNLKQAQRTMDARQYEEKPLVVSCVTTDFAMQNVLKQMGLNVVALDGRLIRELRTFILRCYACYKTTSIMTKVFCPKCGYKTLKRVAVSVDEQGKQKIHINLKRPLTARGKKFSLPTFKGGKHANNPIVAEDQPVPDQRPTRLGRTKTNALDPDYIAGMSPFAVHDINSKSAMLGIRNNGKNNEVKYWMYKNPNAVKRKAKK
ccccEEEEcHHHHHHHccHHHHHHHHHccccEEEEcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccEEEEEccHHHHHHHHHHcccEEEEccccccEEcccEEEEccccccccccccccccccccccccEEEEEEEcccccEEEEEcccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccHHEEccHHHHHHHccHHHHHHHHHccccEEEccccHHHHHHHHHHHHHccccHHccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHcccccHccccccHHHccccHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccEEEEEEEHHHHHHHHHHHHcccEEccccHHHHHHHHHEHHHHHHHHcccccccccccccccccEEEEEEEEcccccEEEEEcccccccccccEEccccccccccccccEEcccccHHHHHHHHHHHHHcccccccccccccccccccccccccEEcccccccccccEEcccccccHHHccccc
digdnvitipEVVNEVTSKRQIRRLVVlpydlqikeadpdsisFVTEFskktgdypslsstDIKVIALTYELHKQhigvdsintepisrQISYinhsvltdkevlagfyspsrgctfnvdggyleGLCRGfkngilkqtdylnlvqcesleeledhtpevlqkidhdeeehsddsgneddddggewitpsnlkqAQRTMDarqyeekplvvSCVTTDFAMQNVLKQMGLNVVALDGRLIRELRTFILRCYACykttsimtkvfcpkcgyktLKRVAVSVDEQGKQKIHInlkrpltargkkfslptfkggkhannpivaedqpvpdqrptrlgrtktnaldpdyiagmspfavhdinsKSAMLGIRNNGKNNEVKYWMYknpnavkrkakk
digdnvitipevvnevtskrqirrLVVLPydlqikeadpdsiSFVTEfskktgdypslssTDIKVIALTYELHKQHIGVDSINTEPISRQISYINHSVLTDKEVLAGFYSPSRGCTFNVDGGYLEGLCRGFKNGILKQTDYLNLVQCESLEELEDHTPEVLQKIDhdeeehsddsgneddddggewITPSNLKQAQRTMDARQYEEKPLVVSCVTTDFAMQNVLKQMGLNVVALDGRLIRELRTFILRCYACykttsimtkvfcPKCGYKTLKRVAVsvdeqgkqkihinlkrpltargKKFSLptfkggkhannpivaedqpvpdqrptrlgrtktnaldpDYIAGMSPFAVHDINSKSAMLGIRNNgknnevkywmyknpnavkrkakk
DIGDNVITIPEVVNEVTSKRQIRRLVVLPYDLQIKEADPDSISFVTEFSKKTGDYPSLSSTDIKVIALTYELHKQHIGVDSINTEPISRQISYINHSVLTDKEVLAGFYSPSRGCTFNVDGGYLEGLCRGFKNGILKQTDYLNLVQCESLEELEDHTPEVLQKIdhdeeehsddsgneddddggeWITPSNLKQAQRTMDARQYEEKPLVVSCVTTDFAMQNVLKQMGLNVVALDGRLIRELRTFILRCYACYKTTSIMTKVFCPKCGYKTLKRVAVSVDEQGKQKIHINLKRPLTARGKKFSLPTFKGGKHANNPIVAEDQPVPDQRPTRLGRTKTNALDPDYIAGMSPFAVHDINSKSAMLGIRNNGKNNEVKYWMYKNPNAVKRKAKK
*****VITIPEVVNEVTSKRQIRRLVVLPYDLQIKEADPDSISFVTEFSKKTGDYPSLSSTDIKVIALTYELHKQHIGVDSINTEPISRQISYINHSVLTDKEVLAGFYSPSRGCTFNVDGGYLEGLCRGFKNGILKQTDYLNLVQCESL********************************************************KPLVVSCVTTDFAMQNVLKQMGLNVVALDGRLIRELRTFILRCYACYKTTSIMTKVFCPKCGYKTLKRVAVSVDEQGKQKIHINLKRPL***********************************************DYIAGMSPFAVHDINSKSAMLGIRNNGKNNEVKYWMYK***********
DIGDNVITIPEVVNEVTSKRQIRRLVVLPYDLQIKEADPDSISFVTEFSKKTGDYPSLSSTDIKVIALTYELHKQHIGVD**********************************************************************************************************ITPSNLK**************PLVVSCVTTDFAMQNVLKQMGLNVVALDGRLIRELRTFILRCYACYKTTSIMTKVFCPKCGYKTLKRVAVSVDEQGKQKIHINLKRPLTARGKKFSLPT*****HANNPIVAEDQP*******************DYIAGMSPFAVHDIN**********************************
DIGDNVITIPEVVNEVTSKRQIRRLVVLPYDLQIKEADPDSISFVTEFSKKTGDYPSLSSTDIKVIALTYELHKQHIGVDSINTEPISRQISYINHSVLTDKEVLAGFYSPSRGCTFNVDGGYLEGLCRGFKNGILKQTDYLNLVQCESLEELEDHTPEVLQKIDH****************GGEWITPSNL**********QYEEKPLVVSCVTTDFAMQNVLKQMGLNVVALDGRLIRELRTFILRCYACYKTTSIMTKVFCPKCGYKTLKRVAVSVDEQGKQKIHINLKRPLTARGKKFSLPTFKGGKHANNPIVAEDQPVPDQRPTRLGRTKTNALDPDYIAGMSPFAVHDINSKSAMLGIRNNGKNNEVKYWMYKNPNAVKRKAKK
DIGDNVITIPEVVNEVTSKRQIRRLVVLPYDLQIKEADPDSISFVTEFSKKTGDYPSLSSTDIKVIALTYELHKQH***********************************************************************************************************GEWITPSNLKQAQRTMDARQYEEKPLVVSCVTTDFAMQNVLKQMGLNVVALDGRLIRELRTFILRCYACYKTTSIMTKVFCPKCGYKTLKRVAVSVDEQGKQKIHINLKRPLTARGKKFSLPTFKGGKHANNPIVAEDQPVPDQRPTRLGRTKTNALDPDYIAGMSPFAVHDINSKSAMLGIR*****NEVKYW**************
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DIGDNVITIPEVVNEVTSKRQIRRLVVLPYDLQIKEADPDSISFVTEFSKKTGDYPSLSSTDIKVIALTYELHKQHIGVDSINTEPISRQISYINHSVLTDKEVLAGFYSPSRGCTFNVDGGYLEGLCRGFKNGILKQTDYLNLVQCESLEELEDHTPEVLQKIDHDEEEHSDDSGNEDDDDGGEWITPSNLKQAQRTMDARQYEEKPLVVSCVTTDFAMQNVLKQMGLNVVALDGRLIRELRTFILRCYACYKTTSIMTKVFCPKCGYKTLKRVAVSVDEQGKQKIHINLKRPLTARGKKFSLPTFKGGKHANNPIVAEDQPVPDQRPTRLGRTKTNALDPDYIAGMSPFAVHDINSKSAMLGIRNNGKNNEVKYWMYKNPNAVKRKAKK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query391 2.2.26 [Sep-21-2011]
Q8BW10403 RNA-binding protein NOB1 yes N/A 0.964 0.935 0.444 2e-77
Q4R537412 RNA-binding protein NOB1 N/A N/A 0.956 0.907 0.445 8e-77
Q3T042413 RNA-binding protein NOB1 yes N/A 0.984 0.932 0.444 1e-76
Q5RBB3411 RNA-binding protein NOB1 yes N/A 0.925 0.880 0.426 4e-76
Q6VEU1410 RNA-binding protein NOB1 yes N/A 0.930 0.887 0.425 3e-75
Q9ULX3412 RNA-binding protein NOB1 yes N/A 0.964 0.915 0.441 6e-75
Q9UTK0388 20S-pre-rRNA D-site endon yes N/A 0.892 0.899 0.305 2e-37
Q08444459 20S-pre-rRNA D-site endon yes N/A 0.478 0.407 0.300 4e-15
Q25531348 V-type proton ATPase subu N/A N/A 0.112 0.126 0.772 8e-15
Q9W4P5350 V-type proton ATPase subu no N/A 0.115 0.128 0.755 2e-13
>sp|Q8BW10|NOB1_MOUSE RNA-binding protein NOB1 OS=Mus musculus GN=Nob1 PE=1 SV=1 Back     alignment and function desciption
 Score =  290 bits (741), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 175/394 (44%), Positives = 247/394 (62%), Gaps = 17/394 (4%)

Query: 1   DIGDNVITIPEVVNEVTSKRQIRRLVVLPYDLQIKEADPDSISFVTEFSKKTGDYPSLSS 60
           DIG N+ TI EVV E+  K   RRL VLPY L+ KE  P+ +  VTEFSKKTGDYPSLS+
Sbjct: 22  DIGKNIYTIREVVREIRDKATRRRLAVLPYQLRFKEPLPEYVRLVTEFSKKTGDYPSLSA 81

Query: 61  TDIKVIALTYELHKQHIGVDSINTEPISRQISY-INHSVLTDKEVLAGFYSPSRGCTFNV 119
           TDI+V+ALTY+L  + +GV  +  EP   ++S  I H        ++GF+ PS+      
Sbjct: 82  TDIQVLALTYQLEAEFVGVSHLKKEPEKAKVSSSIQHPETALH--ISGFHLPSKSKPLQ- 138

Query: 120 DGGYLEGLCRGFKNGILKQTDYLNLVQCES-LEELEDHTPEVLQKIDHDEEEHSDDSGNE 178
                E + RG      +  ++ + +   + L  ++    E+L  ID  EEE  ++   +
Sbjct: 139 -----EAVDRGHAADGPENLEFSSFMFWRTPLPNIDRELQELL--IDGREEEEEEEECED 191

Query: 179 DDDDGGEWITPSNLKQAQRTMDARQYEEKPLVVSCVTTDFAMQNVLKQMGLNVVALDGRL 238
            DDDGG WITPSN+KQ Q+ ++     E  + V CVTTDFAMQNVL QMGL+V+A++G L
Sbjct: 192 SDDDGGGWITPSNIKQIQQELEQCDTPED-VQVGCVTTDFAMQNVLLQMGLHVLAVNGML 250

Query: 239 IRELRTFILRCYACYKTTSIMTKVFCPKCGYKTLKRVAVSVDEQGKQKIHINLK-RPLTA 297
           +RE R++ILRC+ C+KTTS M +VFC  CG KTLK+V+V++++ G   +H +   + L  
Sbjct: 251 VREARSYILRCHGCFKTTSDMNRVFCGHCGNKTLKKVSVTINDDGTLHMHFSRNPKVLNP 310

Query: 298 RGKKFSLPTFKGGKHANNPIVAEDQPVPDQRPTRLGRTKTNALDPDYIAGMSPFAVHDIN 357
           RG ++SLPT KGGK+A NP + EDQ  P  R ++  R KT+   PDYIAG+SPFA +DI+
Sbjct: 311 RGLRYSLPTPKGGKYAINPHLTEDQRFPQLRLSQKARQKTDVFAPDYIAGVSPFAENDIS 370

Query: 358 SKSAMLGIRNNGKNNEVKYWMYKNPNAVKRKAKK 391
           S+SA+L +R+       +     NPNA ++K  K
Sbjct: 371 SRSAILQVRDGMLGAGRRRL---NPNASRKKFVK 401
May play a role in mRNA degradation.
Mus musculus (taxid: 10090)
>sp|Q4R537|NOB1_MACFA RNA-binding protein NOB1 OS=Macaca fascicularis GN=NOB1 PE=2 SV=1 Back     alignment and function description
>sp|Q3T042|NOB1_BOVIN RNA-binding protein NOB1 OS=Bos taurus GN=NOB1 PE=2 SV=1 Back     alignment and function description
>sp|Q5RBB3|NOB1_PONAB RNA-binding protein NOB1 OS=Pongo abelii GN=NOB1 PE=2 SV=1 Back     alignment and function description
>sp|Q6VEU1|NOB1_RAT RNA-binding protein NOB1 OS=Rattus norvegicus GN=Nob1 PE=2 SV=1 Back     alignment and function description
>sp|Q9ULX3|NOB1_HUMAN RNA-binding protein NOB1 OS=Homo sapiens GN=NOB1 PE=1 SV=1 Back     alignment and function description
>sp|Q9UTK0|NOB1_SCHPO 20S-pre-rRNA D-site endonuclease nob1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nob1 PE=3 SV=1 Back     alignment and function description
>sp|Q08444|NOB1_YEAST 20S-pre-rRNA D-site endonuclease NOB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOB1 PE=1 SV=1 Back     alignment and function description
>sp|Q25531|VA0D_MANSE V-type proton ATPase subunit d OS=Manduca sexta PE=2 SV=1 Back     alignment and function description
>sp|Q9W4P5|VA0D1_DROME V-type proton ATPase subunit d 1 OS=Drosophila melanogaster GN=VhaAC39-1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query391
91083257404 PREDICTED: similar to CG2972 CG2972-PA [ 0.951 0.920 0.536 1e-110
380023853444 PREDICTED: RNA-binding protein NOB1-like 0.984 0.867 0.510 1e-110
350410866479 PREDICTED: RNA-binding protein NOB1-like 0.989 0.807 0.478 1e-107
340720156479 PREDICTED: RNA-binding protein NOB1-like 0.989 0.807 0.462 1e-106
242013896454 rna-binding protein nob1, putative [Pedi 0.989 0.852 0.460 1e-105
307205414461 RNA-binding protein NOB1 [Harpegnathos s 0.989 0.839 0.452 3e-99
332373246421 unknown [Dendroctonus ponderosae] 0.923 0.857 0.473 1e-98
357624395430 hypothetical protein KGM_19784 [Danaus p 0.956 0.869 0.466 6e-94
195447312478 GK25644 [Drosophila willistoni] gi|19416 0.956 0.782 0.440 2e-91
289742255454 putative RNA-binding protein NOB1P [Glos 0.913 0.786 0.459 3e-88
>gi|91083257|ref|XP_974124.1| PREDICTED: similar to CG2972 CG2972-PA [Tribolium castaneum] gi|270006950|gb|EFA03398.1| hypothetical protein TcasGA2_TC013384 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/397 (53%), Positives = 280/397 (70%), Gaps = 25/397 (6%)

Query: 1   DIGDNVITIPEVVNEVTSKRQIRRLVVLPYDLQIKEADPDSISFVTEFSKKTGDYPSLSS 60
           D+ + ++T   VV+E+ +KRQ++RLVVLPYDLQ+KE  P++I  VTEF+KKTGDYPSLS+
Sbjct: 26  DVAEKMVTCQSVVDEILNKRQLKRLVVLPYDLQVKEVFPENIKIVTEFAKKTGDYPSLSA 85

Query: 61  TDIKVIALTYELHKQHIGVDSINTEPI-SRQISYINHSVLTDKEVLAGFYSPS------R 113
           TDI+V+ALTY+L K+ +GV+ + TEP+  R ++    +V    +V  GF+ P       R
Sbjct: 86  TDIQVMALTYQLEKEAVGVEHLRTEPVFQRTVTTTGPTVDLHPDV-TGFFLPGHTKIKDR 144

Query: 114 GCTFNVDGGYLEGLCRGFKNGILKQTDYLNLVQCESLEELEDHTPEVLQKIDHDEEEHSD 173
               N +   +E L + F+            ++C   E  EDH  +VL  +D   +    
Sbjct: 145 PGETNEETDEIEKLQQKFET-----------IECADEETSEDH--DVLVPVDDASDISGS 191

Query: 174 DSGNEDDDDGGEWITPSNLKQAQRTMDARQYEEKPLVVSCVTTDFAMQNVLKQMGLNVVA 233
           +S  +DDDD G WITPSN+ QA++ ++++  EEK + ++C+TTDFAMQNVLKQM LNV A
Sbjct: 192 NSDEDDDDDSG-WITPSNVSQAKKQVNSQLIEEKHVKIACMTTDFAMQNVLKQMNLNVAA 250

Query: 234 LDGRLIRELRTFILRCYACYKTTSIMTKVFCPKCGYKTLKRVAVSVDEQGKQKIHINLKR 293
           LDGR+I++LRT+ILRCYAC+KTTSIMTK FCPKCG  TLK+VAVS++E GK +IHIN KR
Sbjct: 251 LDGRMIKQLRTYILRCYACFKTTSIMTKKFCPKCGLNTLKKVAVSLNEDGKLQIHINAKR 310

Query: 294 PLTARGKKFSLPTFKGGKHANNPIVAEDQPVPDQRPTRLGRTKTNALDPDYIAGMSPFAV 353
           PLTARGKKFSLP  KGGKH NNPI+AED P+P  R ++L RTK N LD DYIAG SPFAV
Sbjct: 311 PLTARGKKFSLPRMKGGKHPNNPILAEDHPMPQNRASKLARTKINPLDDDYIAGFSPFAV 370

Query: 354 HDINSKSAMLGIRNNGKNNEVKYWMYKNPNAVKRKAK 390
            D+ S+SA LGIR      E+KYWM KNPN  +R+ K
Sbjct: 371 RDVTSRSAQLGIR---PGQEMKYWMRKNPNEARRRRK 404

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|380023853|ref|XP_003695725.1| PREDICTED: RNA-binding protein NOB1-like [Apis florea] Back     alignment and taxonomy information
>gi|350410866|ref|XP_003489161.1| PREDICTED: RNA-binding protein NOB1-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340720156|ref|XP_003398509.1| PREDICTED: RNA-binding protein NOB1-like isoform 2 [Bombus terrestris] Back     alignment and taxonomy information
>gi|242013896|ref|XP_002427636.1| rna-binding protein nob1, putative [Pediculus humanus corporis] gi|212512057|gb|EEB14898.1| rna-binding protein nob1, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|307205414|gb|EFN83755.1| RNA-binding protein NOB1 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|332373246|gb|AEE61764.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
>gi|357624395|gb|EHJ75180.1| hypothetical protein KGM_19784 [Danaus plexippus] Back     alignment and taxonomy information
>gi|195447312|ref|XP_002071158.1| GK25644 [Drosophila willistoni] gi|194167243|gb|EDW82144.1| GK25644 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|289742255|gb|ADD19875.1| putative RNA-binding protein NOB1P [Glossina morsitans morsitans] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query391
FB|FBgn0030177472 CG2972 [Drosophila melanogaste 0.508 0.421 0.587 2.4e-87
RGD|735222410 Nob1 "NIN1/RPN12 binding prote 0.514 0.490 0.5 1.4e-74
MGI|MGI:1914869403 Nob1 "NIN1/RPN12 binding prote 0.516 0.501 0.497 1.8e-74
UNIPROTKB|Q9ULX3412 NOB1 "RNA-binding protein NOB1 0.516 0.490 0.497 1.6e-73
UNIPROTKB|Q3T042413 NOB1 "RNA-binding protein NOB1 0.984 0.932 0.429 8.6e-72
WB|WBGene00021843364 Y54E10BR.4 [Caenorhabditis ele 0.491 0.527 0.466 1.3e-57
POMBASE|SPAC1486.09388 SPAC1486.09 "ribosome biogenes 0.475 0.479 0.373 9.5e-42
TAIR|locus:2163071602 NOB1 [Arabidopsis thaliana (ta 0.375 0.244 0.407 2e-34
ASPGD|ASPL0000014547431 AN8253 [Emericella nidulans (t 0.416 0.378 0.385 2.4e-32
UNIPROTKB|G4MQ79467 MGG_09254 "20S-pre-rRNA D-site 0.416 0.349 0.351 2.1e-29
FB|FBgn0030177 CG2972 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 627 (225.8 bits), Expect = 2.4e-87, Sum P(2) = 2.4e-87
 Identities = 121/206 (58%), Positives = 159/206 (77%)

Query:   186 WITPSNLKQAQRTMDAR-QYEEKPLVVSCVTTDFAMQNVLKQMGLNVVALDGRLIRELRT 244
             WIT SN+K+A++ ++ + + +E P  V+C+TTD+A+QNVLKQ+ L++ AL+GR+I++LRT
Sbjct:   266 WITHSNIKKAKKALEGKVETDEVP-PVACMTTDYALQNVLKQLNLHLAALNGRIIKQLRT 324

Query:   245 FILRCYACYKTTSIMTKVFCPKCGYKTLKRVAVSVDEQGKQKIHINLKRPLTARGKKFSL 304
             +ILRCYACYKTTSIMTKVFCP CG KTLKRVAVS+DE G+Q IHIN +RPLT + K  SL
Sbjct:   325 YILRCYACYKTTSIMTKVFCPNCGNKTLKRVAVSLDENGRQVIHINTRRPLTNKYKNQSL 384

Query:   305 PTFKGGKHANNPIVAEDQPVPDQRPTRLGRTKTNALDPDYIAGMSPFAVHDINSKSAMLG 364
             P F+GGKH+ NPI+ EDQP+P Q P+R+ +TKTNALD DY AG SPF + D++SKSAML 
Sbjct:   385 PRFQGGKHSRNPILFEDQPMPRQMPSRVAKTKTNALDQDYTAGFSPFVLRDVDSKSAML- 443

Query:   365 IRNNGKNNEVKYWMYKNPNAVKRKAK 390
              R+ G    +K W   N     R+ K
Sbjct:   444 -RSKGN---LKEWARNNNFEEDRRRK 465
GO:0022008 "neurogenesis" evidence=IMP
RGD|735222 Nob1 "NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1914869 Nob1 "NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q9ULX3 NOB1 "RNA-binding protein NOB1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q3T042 NOB1 "RNA-binding protein NOB1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
WB|WBGene00021843 Y54E10BR.4 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
POMBASE|SPAC1486.09 SPAC1486.09 "ribosome biogenesis protein Nob1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
TAIR|locus:2163071 NOB1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000014547 AN8253 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|G4MQ79 MGG_09254 "20S-pre-rRNA D-site endonuclease NOB1" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8BW10NOB1_MOUSENo assigned EC number0.44410.96410.9354yesN/A
Q3T042NOB1_BOVINNo assigned EC number0.44440.98460.9322yesN/A
Q9UTK0NOB1_SCHPO3, ., 1, ., -, ., -0.30590.89250.8994yesN/A
Q6VEU1NOB1_RATNo assigned EC number0.42510.93090.8878yesN/A
Q9ULX3NOB1_HUMANNo assigned EC number0.44160.96410.9150yesN/A
Q5RBB3NOB1_PONABNo assigned EC number0.42680.92580.8807yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query391
cd09876109 cd09876, PIN_Nob1, PIN domain of eukaryotic riboso 4e-38
pfam0877273 pfam08772, NOB1_Zn_bind, Nin one binding (NOB1) Zn 1e-34
COG1439177 COG1439, COG1439, Predicted nucleic acid-binding p 1e-15
PRK12496164 PRK12496, PRK12496, hypothetical protein; Provisio 3e-12
COG1439177 COG1439, COG1439, Predicted nucleic acid-binding p 2e-07
cd09863125 cd09863, PIN_Smg6-like, PIN domain of human telome 9e-07
pfam01992335 pfam01992, vATP-synt_AC39, ATP synthase (C/AC39) s 2e-05
>gnl|CDD|189046 cd09876, PIN_Nob1, PIN domain of eukaryotic ribosome assembly factor Nob1 and archaeal UPF0129 protein Ta0041-like homologs Back     alignment and domain information 
 Score =  132 bits (335), Expect = 4e-38
 Identities = 47/92 (51%), Positives = 66/92 (71%)

Query: 1   DIGDNVITIPEVVNEVTSKRQIRRLVVLPYDLQIKEADPDSISFVTEFSKKTGDYPSLSS 60
            + + + T PEVV E+  K+  RRL  LP++L+++E  P+SI  V+EF+KKTGDY SLS+
Sbjct: 16  TLAEELYTTPEVVAEIRDKQARRRLATLPFELKVREPSPESIKAVSEFAKKTGDYASLSA 75

Query: 61  TDIKVIALTYELHKQHIGVDSINTEPISRQIS 92
           TDIKVIALTYEL  + +G D +  EP  ++IS
Sbjct: 76  TDIKVIALTYELEAELVGDDHLRNEPGRKKIS 107

PIN (PilT N terminus) domain of the Saccharomyces cerevisiae ribosome assembly factor, Nob1 (Nin one binding) protein, the Thermoplasma acidophilum DSM 1728, UPF0129 protein Ta0041, and similar eukaryotic and archaeal homologs are included in this family. The Nob1 PIN domain binds the single-stranded cleavage site D at the 3#end of 18S rRNA. Recombinant Nob1 binds as a tetramer to pre-18S rRNA fragments containing cleavage site D and believed to cleave at this site. These PIN domains are homologs of flap endonuclease-1 (FEN1)-like PIN domains, but lack the extensive arch/clamp region and the H3TH (helix-3-turn-helix) domain, an atypical helix-hairpin-helix-2-like region, seen in FEN1-like PIN domains. PIN domains within this subgroup contain three highly conserved acidic residues (putative metal-binding, active site residues). Length = 109
>gnl|CDD|192150 pfam08772, NOB1_Zn_bind, Nin one binding (NOB1) Zn-ribbon like Back     alignment and domain information
>gnl|CDD|224356 COG1439, COG1439, Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only] Back     alignment and domain information
>gnl|CDD|237118 PRK12496, PRK12496, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|224356 COG1439, COG1439, Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only] Back     alignment and domain information
>gnl|CDD|189033 cd09863, PIN_Smg6-like, PIN domain of human telomerase-binding protein EST1, Smg6, and ribosome assembly factor, Nob1, Archaeoglobus fulgidus AF0591 protein and other eukaryotic, bacterial, and archaeal homologs Back     alignment and domain information
>gnl|CDD|216834 pfam01992, vATP-synt_AC39, ATP synthase (C/AC39) subunit Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 391
KOG2463|consensus376 100.0
COG1439177 Predicted nucleic acid-binding protein, consists o 100.0
PF0877273 NOB1_Zn_bind: Nin one binding (NOB1) Zn-ribbon lik 100.0
PRK12496164 hypothetical protein; Provisional 100.0
PF1501787 AF1Q: Drug resistance and apoptosis regulator 98.84
PRK04358217 hypothetical protein; Provisional 98.81
TIGR03875206 RNA_lig_partner RNA ligase partner, MJ_0950 family 98.77
PF08745205 UPF0278: UPF0278 family; InterPro: IPR022785 This 98.26
PF0972342 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR0134 95.98
PF1324826 zf-ribbon_3: zinc-ribbon domain 95.35
smart00670111 PINc Large family of predicted nucleotide-binding 95.22
smart0083441 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C 95.21
TIGR0260552 CxxC_CxxC_SSSS putative regulatory protein, FmdB f 94.68
PF1324023 zinc_ribbon_2: zinc-ribbon domain 93.64
PRK00564117 hypA hydrogenase nickel incorporation protein; Pro 93.64
PRK1313056 H/ACA RNA-protein complex component Nop10p; Review 93.53
TIGR00100115 hypA hydrogenase nickel insertion protein HypA. In 93.42
PRK03681114 hypA hydrogenase nickel incorporation protein; Val 93.37
PF1217237 DUF35_N: Rubredoxin-like zinc ribbon domain (DUF35 93.28
PF0915136 DUF1936: Domain of unknown function (DUF1936); Int 93.04
PRK12380113 hydrogenase nickel incorporation protein HybF; Pro 92.92
COG5257 415 GCD11 Translation initiation factor 2, gamma subun 92.75
PF1057126 UPF0547: Uncharacterised protein family UPF0547; I 92.71
PRK0039846 rpoP DNA-directed RNA polymerase subunit P; Provis 92.69
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 92.35
PF0413553 Nop10p: Nucleolar RNA-binding protein, Nop10p fami 91.96
PRK03824135 hypA hydrogenase nickel incorporation protein; Pro 91.63
PF01155113 HypA: Hydrogenase expression/synthesis hypA family 91.44
smart0065944 RPOLCX RNA polymerase subunit CX. present in RNA p 91.36
PF1480334 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C. 89.98
PF1420555 Cys_rich_KTR: Cysteine-rich KTR 89.74
COG1545140 Predicted nucleic-acid-binding protein containing 89.46
TIGR0102354 rpmG_bact ribosomal protein L33, bacterial type. T 88.58
COG1198 730 PriA Primosomal protein N' (replication factor Y) 88.25
CHL0010466 rpl33 ribosomal protein L33 88.09
COG233182 Uncharacterized protein conserved in bacteria [Fun 87.83
COG3364112 Zn-ribbon containing protein [General function pre 87.82
COG026750 RpmG Ribosomal protein L33 [Translation, ribosomal 87.42
PF0929732 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon do 87.02
PRK0835161 DNA-directed RNA polymerase subunit E''; Validated 86.97
PRK07218423 replication factor A; Provisional 86.53
PRK14714 1337 DNA polymerase II large subunit; Provisional 86.52
PF0215035 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; I 86.13
COG226059 Predicted Zn-ribbon RNA-binding protein [Translati 85.77
COG1645131 Uncharacterized Zn-finger containing protein [Gene 85.66
COG3091156 SprT Zn-dependent metalloprotease, SprT family [Ge 85.53
COG199649 RPC10 DNA-directed RNA polymerase, subunit RPC10 ( 85.27
PRK0639364 rpoE DNA-directed RNA polymerase subunit E''; Vali 85.09
COG0375115 HybF Zn finger protein HypA/HybF (possibly regulat 84.84
PRK04351149 hypothetical protein; Provisional 84.82
PRK14559 645 putative protein serine/threonine phosphatase; Pro 84.73
PF14319111 Zn_Tnp_IS91: Transposase zinc-binding domain 84.52
TIGR03844 398 cysteate_syn cysteate synthase. Members of this fa 84.36
PRK0050450 rpmG 50S ribosomal protein L33; Validated 84.2
TIGR00595 505 priA primosomal protein N'. All proteins in this f 84.05
PF09845131 DUF2072: Zn-ribbon containing protein (DUF2072); I 83.91
COG1592166 Rubrerythrin [Energy production and conversion] 83.85
PRK0043250 30S ribosomal protein S27ae; Validated 83.36
PF10263157 SprT-like: SprT-like family; InterPro: IPR006640 T 83.25
PF0360432 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa 83.19
PF11023114 DUF2614: Protein of unknown function (DUF2614); In 83.11
PRK0059553 rpmG 50S ribosomal protein L33; Validated 82.83
PRK00762124 hypA hydrogenase nickel incorporation protein; Pro 82.31
PF0047148 Ribosomal_L33: Ribosomal protein L33; InterPro: IP 81.88
cd04476166 RPA1_DBD_C RPA1_DBD_C: A subfamily of OB folds cor 81.59
PRK00420112 hypothetical protein; Validated 81.57
PRK07591 421 threonine synthase; Validated 80.86
COG1933253 Archaeal DNA polymerase II, large subunit [DNA rep 80.47
PRK08402355 replication factor A; Reviewed 80.33
PRK06260 397 threonine synthase; Validated 80.24
>KOG2463|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.3e-113  Score=828.51  Aligned_cols=354  Identities=40%  Similarity=0.618  Sum_probs=279.6

Q ss_pred             CCCCceeechhHHHhhcCHHHHHHHhhCCCceEEecCChhhHHHHHHHHHHhCCCCCCChhhHHHHHHhhhhhhhccCcc
Q psy12603          1 DIGDNVITIPEVVNEVTSKRQIRRLVVLPYDLQIKEADPDSISFVTEFSKKTGDYPSLSSTDIKVIALTYELHKQHIGVD   80 (391)
Q Consensus         1 ~~a~~~yT~p~Vi~EIrD~~sR~~L~~Lp~~L~vreP~~esi~~V~~FAkkTGD~~sLS~~DI~ViALtyeLe~E~~G~~   80 (391)
                      ++|++|||||+|++||||+.||++|++|||+|++|+|+||+|++|++|||+||||+|||.+||+||||||+||.|.+|+|
T Consensus        23 n~a~~fYt~p~V~~EIrd~asRk~le~~pf~i~~rePspe~v~kV~~fak~TGDyssLS~tDi~vlALTYeLe~e~~g~~  102 (376)
T KOG2463|consen   23 NKADSFYTTPEVVNEIRDAASRKRLEFLPFTIKLREPSPEYVRKVIKFAKLTGDYSSLSDTDIKVLALTYELEAEVVGGD  102 (376)
T ss_pred             hhhhcccccHHHHHHhhCHHhhcchhhcccEEEEecCCHHHHHHHHHHHHhcCCccccccccceeeeeeeeeehhhcccc
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCcccccccccCCCccchhccccccCCCCCCccCCCCCccccccccccccccccccchhhccccchhhhccCCccc
Q psy12603         81 SINTEPISRQISYINHSVLTDKEVLAGFYSPSRGCTFNVDGGYLEGLCRGFKNGILKQTDYLNLVQCESLEELEDHTPEV  160 (391)
Q Consensus        81 ~Lr~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  160 (391)
                      |||+.|++..+... ...++...+.. ++.+...+          ..++++.. .+         .+++++..++.... 
T Consensus       103 ~Lr~~p~~~~~~~~-~~~~~~~e~~s-~~~~~~~e----------~v~E~ek~-~~---------~~E~eE~~ee~~~~-  159 (376)
T KOG2463|consen  103 RLRKKPGDALDASA-EVLSNGTEKLS-NHTEEDTE----------DVPETEKK-RE---------ANEREEHVEESGVK-  159 (376)
T ss_pred             cccccCcchhhccc-cccccchhhhc-cccccCCC----------CCchhhhh-hh---------hcchhhhhhhhhcc-
Confidence            99999999877541 11111111111 11110000          00000000 00         00000000000000 


Q ss_pred             ccccccccccCCCCCCCCCCCCCCCccCcccHHHHHhhhhcccccCCCceEEEecCcHHHHHHHHHhCCceeccCccccc
Q psy12603        161 LQKIDHDEEEHSDDSGNEDDDDGGEWITPSNLKQAQRTMDARQYEEKPLVVSCVTTDFAMQNVLKQMGLNVVALDGRLIR  240 (391)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~ddd~~~WITp~Ni~~~~~~~~~~~~~~~~~~Vac~TtDfAMQNVllqmGL~l~s~~G~~Ik  240 (391)
                       +....+++ ..+-++.++|+|++|||||+||.+.+...+....+ +++.|||+|+|||||||||||||+|++++||+|+
T Consensus       160 -e~~~~~ee-~~E~~d~~ed~DdDgwitp~ni~~~~~e~~al~~p-e~~~Vac~TtDfamQNVlLqm~L~l~~~~G~~Ir  236 (376)
T KOG2463|consen  160 -EGHCNDEE-IEELEDVEEDADDDGWITPSNITEAIIELGALNRP-ENQLVACLTTDFAMQNVLLQMNLNLLAMSGMKIR  236 (376)
T ss_pred             -cccCCchh-hhhhhccccccccccccccchHHHHHHhhhccccc-ccceeeeecccHHHHHHHHHhcccccCccchhhh
Confidence             00000000 01112223444444599999999998888766655 7889999999999999999999999999999999


Q ss_pred             eeeeEEEEccCccccccccCcccCCCCCccceeEEEEEEcCCCcEEEeeccCCccccCCcccccCCCCCCCCCCCceeeC
Q psy12603        241 ELRTFILRCYACYKTTSIMTKVFCPKCGYKTLKRVAVSVDEQGKQKIHINLKRPLTARGKKFSLPTFKGGKHANNPIVAE  320 (391)
Q Consensus       241 ~~r~wvlRC~aCf~~t~~~~k~FCP~CGn~TL~Rvsvsvd~~G~~~~hl~~n~~~n~RG~~ySlPkPkGGk~~~~~IL~E  320 (391)
                      ++|+|||||||||++|++|+|.|||+|||+||+||+|||+++|++++||++||+||+||++||||+|||||+.+||||||
T Consensus       237 ~~r~~iLRCh~Cfsit~~m~k~FCp~CG~~TL~K~aVsv~~dG~~~~h~k~r~~~n~RG~~YSlp~PkGgk~~kN~~LrE  316 (376)
T KOG2463|consen  237 SVRSYILRCHGCFSITSEMPKDFCPSCGHKTLTKCAVSVDEDGNGQTHFKKRFQWNNRGLQYSLPKPKGGKVAKNPILRE  316 (376)
T ss_pred             hhhhheeEeeeeeEecCccchhcccccCCCeeeEEEEEecCCCceeEEeecccccccCcceeecCCCCCCccccCccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccccccccccCCCCCcccccCCCCcccccccccccccccccCCCCcccccccccCCchhhhhcc
Q psy12603        321 DQPVPDQRPTRLGRTKTNALDPDYIAGMSPFAVHDINSKSAMLGIRNNGKNNEVKYWMYKNPNAVKRKAK  390 (391)
Q Consensus       321 DQ~~~~~~~~~~~~~k~~~~d~dy~~g~spf~~~d~~sk~a~lg~r~~~~~~~~~g~~r~npn~~~~~rk  390 (391)
                      ||++||++..+-+++..++|++ |    +||..+|++||+|+||+|..    ...|. |||||++||+++
T Consensus       317 DQ~~~q~~~~q~rkk~~~~~~~-y----gpf~~~d~~s~~a~~~v~~~----~~~~k-~rnpN~skr~~~  376 (376)
T KOG2463|consen  317 DQPEPQRRYVQTRKKVKKPLNE-Y----GPFSGHDVTSRSAILGVRQH----VRIGK-RRNPNESKRKSR  376 (376)
T ss_pred             cCchHHHHHHHHHHhhhccccc-c----CCcccccccccccccchhhh----hhhhc-cCCCchhccccC
Confidence            9999999888744444899987 8    49999999999999999876    35555 889999998864

>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only] Back     alignment and domain information
>PF08772 NOB1_Zn_bind: Nin one binding (NOB1) Zn-ribbon like; InterPro: IPR014881 This entry corresponds to a zinc ribbon and is found on the RNA binding protein NOB1 Back     alignment and domain information
>PRK12496 hypothetical protein; Provisional Back     alignment and domain information
>PF15017 AF1Q: Drug resistance and apoptosis regulator Back     alignment and domain information
>PRK04358 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03875 RNA_lig_partner RNA ligase partner, MJ_0950 family Back     alignment and domain information
>PF08745 UPF0278: UPF0278 family; InterPro: IPR022785 This entry contains proteins of the UPF0278 family and proteins containing PIN domains Back     alignment and domain information
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria Back     alignment and domain information
>PF13248 zf-ribbon_3: zinc-ribbon domain Back     alignment and domain information
>smart00670 PINc Large family of predicted nucleotide-binding domains Back     alignment and domain information
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein Back     alignment and domain information
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family Back     alignment and domain information
>PF13240 zinc_ribbon_2: zinc-ribbon domain Back     alignment and domain information
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional Back     alignment and domain information
>PRK13130 H/ACA RNA-protein complex component Nop10p; Reviewed Back     alignment and domain information
>TIGR00100 hypA hydrogenase nickel insertion protein HypA Back     alignment and domain information
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated Back     alignment and domain information
>PF12172 DUF35_N: Rubredoxin-like zinc ribbon domain (DUF35_N); InterPro: IPR022002 This domain has no known function and is found in conserved hypothetical archaeal and bacterial proteins Back     alignment and domain information
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins Back     alignment and domain information
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional Back     alignment and domain information
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines Back     alignment and domain information
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PF04135 Nop10p: Nucleolar RNA-binding protein, Nop10p family; InterPro: IPR007264 H/ACA ribonucleoprotein particles (RNPs) are a family of RNA pseudouridine synthases that specify modification sites through guide RNAs Back     alignment and domain information
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional Back     alignment and domain information
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation Back     alignment and domain information
>smart00659 RPOLCX RNA polymerase subunit CX Back     alignment and domain information
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C Back     alignment and domain information
>PF14205 Cys_rich_KTR: Cysteine-rich KTR Back     alignment and domain information
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only] Back     alignment and domain information
>TIGR01023 rpmG_bact ribosomal protein L33, bacterial type Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>CHL00104 rpl33 ribosomal protein L33 Back     alignment and domain information
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG3364 Zn-ribbon containing protein [General function prediction only] Back     alignment and domain information
>COG0267 RpmG Ribosomal protein L33 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains Back     alignment and domain information
>PRK08351 DNA-directed RNA polymerase subunit E''; Validated Back     alignment and domain information
>PRK07218 replication factor A; Provisional Back     alignment and domain information
>PRK14714 DNA polymerase II large subunit; Provisional Back     alignment and domain information
>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2 Back     alignment and domain information
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only] Back     alignment and domain information
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only] Back     alignment and domain information
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription] Back     alignment and domain information
>PRK06393 rpoE DNA-directed RNA polymerase subunit E''; Validated Back     alignment and domain information
>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only] Back     alignment and domain information
>PRK04351 hypothetical protein; Provisional Back     alignment and domain information
>PRK14559 putative protein serine/threonine phosphatase; Provisional Back     alignment and domain information
>PF14319 Zn_Tnp_IS91: Transposase zinc-binding domain Back     alignment and domain information
>TIGR03844 cysteate_syn cysteate synthase Back     alignment and domain information
>PRK00504 rpmG 50S ribosomal protein L33; Validated Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function Back     alignment and domain information
>COG1592 Rubrerythrin [Energy production and conversion] Back     alignment and domain information
>PRK00432 30S ribosomal protein S27ae; Validated Back     alignment and domain information
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT) Back     alignment and domain information
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates Back     alignment and domain information
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins Back     alignment and domain information
>PRK00595 rpmG 50S ribosomal protein L33; Validated Back     alignment and domain information
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional Back     alignment and domain information
>PF00471 Ribosomal_L33: Ribosomal protein L33; InterPro: IPR001705 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>cd04476 RPA1_DBD_C RPA1_DBD_C: A subfamily of OB folds corresponding to the C-terminal OB fold, the ssDNA-binding domain (DBD)-C, of human RPA1 (also called RPA70) Back     alignment and domain information
>PRK00420 hypothetical protein; Validated Back     alignment and domain information
>PRK07591 threonine synthase; Validated Back     alignment and domain information
>COG1933 Archaeal DNA polymerase II, large subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK08402 replication factor A; Reviewed Back     alignment and domain information
>PRK06260 threonine synthase; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query391
2con_A79 Solution Structure Of Rsgi Ruh-035, A Zn-Ribbon Mod 2e-12
2lcq_A165 Solution Structure Of The Endonuclease Nob1 From P. 6e-04
>pdb|2CON|A Chain A, Solution Structure Of Rsgi Ruh-035, A Zn-Ribbon Module In Mouse Cdna Length = 79 Back     alignment and structure 
Iteration: 1

 Score = 70.1 bits (170), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/66 (45%), Positives = 47/66 (71%), Gaps = 1/66 (1%)
Query: 239 IRELRTFILRCYACYKTTSIMTKVFCPKCGYKTLKRVAVSVDEQGKQKIHINLK-RPLTA 297
           +RE R++ILRC+ C+KTTS M +VFC  CG KTLK+V+V++++ G   +H +   + L  
Sbjct: 8   VREARSYILRCHGCFKTTSDMNRVFCGHCGNKTLKKVSVTINDDGTLHMHFSRNPKVLNP 67
Query: 298 RGKKFS 303
           RG ++S
Sbjct: 68  RGLRYS 73
>pdb|2LCQ|A Chain A, Solution Structure Of The Endonuclease Nob1 From P.Horikoshii Length = 165 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query391
2con_A79 RUH-035 protein, NIN one binding protein; ribosome 1e-32
2lcq_A165 Putative toxin VAPC6; PIN domain, Zn ribbon domain 1e-19
2lcq_A165 Putative toxin VAPC6; PIN domain, Zn ribbon domain 3e-19
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1 Length = 79 Back     alignment and structure
 Score =  116 bits (292), Expect = 1e-32
 Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 1/78 (1%)

Query: 233 ALDGRLIRELRTFILRCYACYKTTSIMTKVFCPKCGYKTLKRVAVSVDEQGKQKIHINLK 292
           +     +RE R++ILRC+ C+KTTS M +VFC  CG KTLK+V+V++++ G   +H +  
Sbjct: 2   SSGSSGVREARSYILRCHGCFKTTSDMNRVFCGHCGNKTLKKVSVTINDDGTLHMHFSRN 61

Query: 293 -RPLTARGKKFSLPTFKG 309
            + L  RG ++S     G
Sbjct: 62  PKVLNPRGLRYSSGPSSG 79
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii} Length = 165 Back     alignment and structure
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii} Length = 165 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query391
2con_A79 RUH-035 protein, NIN one binding protein; ribosome 100.0
2lcq_A165 Putative toxin VAPC6; PIN domain, Zn ribbon domain 99.96
3ix7_A134 Uncharacterized protein TTHA0540; unknown function 95.96
3irb_A145 Uncharacterized protein from DUF35 family; 1381535 95.68
2apo_B60 Ribosome biogenesis protein NOP10; protein-protein 93.89
2aus_D60 NOP10, ribosome biogenesis protein NOP10; isomeras 93.8
2kdx_A119 HYPA, hydrogenase/urease nickel incorporation prot 93.52
1twf_L70 ABC10-alpha, DNA-directed RNA polymerases I, II, a 93.05
2gnr_A145 Conserved hypothetical protein; 13815350, structur 92.93
3i8o_A142 KH domain-containing protein MJ1533; APC89320.5, m 92.27
3v2d_654 50S ribosomal protein L33; ribosome associated inh 90.08
3r8s_150 50S ribosomal protein L33; protein biosynthesis, R 89.45
2zjr_155 50S ribosomal protein L33; ribosome, large ribosom 89.09
3bbo_366 Ribosomal protein L33; large ribosomal subunit, sp 88.88
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 88.35
4ayb_P48 DNA-directed RNA polymerase; transferase, multi-su 88.2
3a43_A139 HYPD, hydrogenase nickel incorporation protein HYP 87.7
2ftc_P52 Mitochondrial ribosomal protein L33 isoform A, mit 86.9
1nkw_182 50S ribosomal protein L33; ribosome, large subunit 86.0
2k4x_A55 30S ribosomal protein S27AE; metal-binding, ribonu 83.96
3h0g_L63 DNA-directed RNA polymerases I, II, and III subuni 81.52
3pwf_A170 Rubrerythrin; non heme iron peroxidases, oxidative 81.23
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1 Back     alignment and structure
Probab=100.00  E-value=2.3e-41  Score=268.81  Aligned_cols=77  Identities=40%  Similarity=0.773  Sum_probs=76.0

Q ss_pred             ccCccccceeeeEEEEccCccccccccCcccCCCCCccceeEEEEEEcCCCcEEEeeccCCc-cccCCcccccCCCCC
Q psy12603        233 ALDGRLIRELRTFILRCYACYKTTSIMTKVFCPKCGYKTLKRVAVSVDEQGKQKIHINLKRP-LTARGKKFSLPTFKG  309 (391)
Q Consensus       233 s~~G~~Ik~~r~wvlRC~aCf~~t~~~~k~FCP~CGn~TL~Rvsvsvd~~G~~~~hl~~n~~-~n~RG~~ySlPkPkG  309 (391)
                      |+||++|+++|+|+|||||||++|++|+|+|||+|||+||+|||||||+||++++||++||| ||+||++||||+|+|
T Consensus         2 s~~G~~Ir~~k~~iLrC~aCf~~t~~~~k~FCp~CGn~TL~Rvsvsvd~~G~~~~hl~~n~~~~n~RG~~ySlPkpkG   79 (79)
T 2con_A            2 SSGSSGVREARSYILRCHGCFKTTSDMNRVFCGHCGNKTLKKVSVTINDDGTLHMHFSRNPKVLNPRGLRYSSGPSSG   79 (79)
T ss_dssp             CCCCCCCCCCCCEEEECSSSCCEESCSSCCSCSSSCCSCCEEEECBCCSSCCCBCCCCCCCCCCCCCCCCCCCCCCCC
T ss_pred             CCCceEeeeeeeeeeEecccceECCCcccccccccCcccceEEEEEECCCCcEEEeccCCccccccCCCCccCCCCCC
Confidence            78999999999999999999999999999999999999999999999999999999999999 999999999999997
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii} Back     alignment and structure
>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus} Back     alignment and structure
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus} Back     alignment and structure
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A Back     alignment and structure
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B Back     alignment and structure
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori} Back     alignment and structure
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ... Back     alignment and structure
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A Back     alignment and structure
>3i8o_A KH domain-containing protein MJ1533; APC89320.5, methanocaldococcus jannaschii DSM 2661, structural genomics, PSI-2; 2.64A {Methanocaldococcus jannaschii} Back     alignment and structure
>3v2d_6 50S ribosomal protein L33; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_5 2hgj_5 2hgu_5 2j03_6 2jl6_6 2jl8_6 2v47_6 2v49_6 2wdi_6 2wdj_6 2wdl_6 2wdn_6 2wh2_6 2wh4_6 2wrj_6 2wrl_6 2wro_6 2wrr_6 2x9s_6 2x9u_6 ... Back     alignment and structure
>3r8s_1 50S ribosomal protein L33; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_1 3j19_1 2wwq_4 3oat_1* 3oas_1* 3ofd_1 3ofc_1 3ofr_1* 3ofz_1* 3og0_1 3ofq_1 3r8t_1 3i1n_1 1vs8_1 1vs6_1 1vt2_1 3i1p_1 3i1r_1 3i1t_1 3i20_1 ... Back     alignment and structure
>2zjr_1 50S ribosomal protein L33; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.6 PDB: 1nwx_1* 1xbp_1* 2zjp_1* 2zjq_1 1nwy_1 3cf5_1* 3dll_1* 3pio_1* 3pip_1* 1pnu_1 1pny_1 1vor_3 1vou_3 1vow_3 1voy_3 1vp0_3 Back     alignment and structure
>3bbo_3 Ribosomal protein L33; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X Back     alignment and structure
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A* Back     alignment and structure
>2ftc_P Mitochondrial ribosomal protein L33 isoform A, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_P Back     alignment and structure
>1nkw_1 50S ribosomal protein L33; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_1* 1yl3_6 2b66_6 2b9n_6 2b9p_6 Back     alignment and structure
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8 Back     alignment and structure
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Back     alignment and structure
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 391
d2cona166 g.41.15.1 (A:8-73) RNA-binding protein NOB1 (Nin o 4e-29
>d2cona1 g.41.15.1 (A:8-73) RNA-binding protein NOB1 (Nin one binding) {Mouse (Mus musculus) [TaxId: 10090]} Length = 66 Back     information, alignment and structure

class: Small proteins
fold: Rubredoxin-like
superfamily: NOB1 zinc finger-like
family: NOB1 zinc finger-like
domain: RNA-binding protein NOB1 (Nin one binding)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  105 bits (265), Expect = 4e-29
 Identities = 30/66 (45%), Positives = 47/66 (71%), Gaps = 1/66 (1%)

Query: 239 IRELRTFILRCYACYKTTSIMTKVFCPKCGYKTLKRVAVSVDEQGKQKIHINLK-RPLTA 297
           +RE R++ILRC+ C+KTTS M +VFC  CG KTLK+V+V++++ G   +H +   + L  
Sbjct: 1   VREARSYILRCHGCFKTTSDMNRVFCGHCGNKTLKKVSVTINDDGTLHMHFSRNPKVLNP 60

Query: 298 RGKKFS 303
           RG ++S
Sbjct: 61  RGLRYS 66

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query391
d2cona166 RNA-binding protein NOB1 (Nin one binding) {Mouse 100.0
d2apob155 Ribosome biogenesis protein Nop10 {Archaeon Methan 93.6
d2ey4e152 Ribosome biogenesis protein Nop10 {Archaeon Pyroco 93.57
d1pvma336 Hypothetical protein Ta0289 C-terminal domain {Arc 93.52
d2gnra1137 Hypothetical protein SSO2064 {Sulfolobus solfatari 92.54
d1neea237 Zinc-binding domain of translation initiation fact 87.47
d1k81a_36 Zinc-binding domain of translation initiation fact 87.02
d2j016145 Ribosomal protein L33p {Thermus thermophilus [TaxI 85.58
d1nnqa237 Rubrerythrin, C-terminal domain {Archaeon Pyrococc 84.57
d1vqoz173 Ribosomal protein L37ae {Archaeon Haloarcula maris 82.01
>d2cona1 g.41.15.1 (A:8-73) RNA-binding protein NOB1 (Nin one binding) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: Rubredoxin-like
superfamily: NOB1 zinc finger-like
family: NOB1 zinc finger-like
domain: RNA-binding protein NOB1 (Nin one binding)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.7e-35  Score=223.23  Aligned_cols=65  Identities=46%  Similarity=0.940  Sum_probs=63.7

Q ss_pred             cceeeeEEEEccCccccccccCcccCCCCCccceeEEEEEEcCCCcEEEeeccCCc-cccCCcccc
Q psy12603        239 IRELRTFILRCYACYKTTSIMTKVFCPKCGYKTLKRVAVSVDEQGKQKIHINLKRP-LTARGKKFS  303 (391)
Q Consensus       239 Ik~~r~wvlRC~aCf~~t~~~~k~FCP~CGn~TL~Rvsvsvd~~G~~~~hl~~n~~-~n~RG~~yS  303 (391)
                      |+++|+|+|||||||+++++|+|+|||+|||+||+|||||||+||++++|+++|++ ||+||++||
T Consensus         1 Ir~vr~~~LrC~aCf~~t~~~~k~FCpkCGn~TL~rvsvsvd~~G~~~~h~~~~~k~~n~RG~~yS   66 (66)
T d2cona1           1 VREARSYILRCHGCFKTTSDMNRVFCGHCGNKTLKKVSVTINDDGTLHMHFSRNPKVLNPRGLRYS   66 (66)
T ss_dssp             CCCCCCEEEECSSSCCEESCSSCCSCSSSCCSCCEEEECBCCSSCCCBCCCCCCCCCCCCCCCCCC
T ss_pred             ChhhheeeeEeeecCcCcCCcccccCcccCCCceeEEEEEECCCCcEEEEecCCCceecCCccCCc
Confidence            89999999999999999999999999999999999999999999999999999977 899999998
>d2apob1 g.41.16.1 (B:403-457) Ribosome biogenesis protein Nop10 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2ey4e1 g.41.16.1 (E:4-55) Ribosome biogenesis protein Nop10 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1pvma3 g.41.13.1 (A:143-178) Hypothetical protein Ta0289 C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2gnra1 b.40.4.15 (A:8-144) Hypothetical protein SSO2064 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1k81a_ g.59.1.1 (A:) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2j0161 g.41.8.6 (6:9-53) Ribosomal protein L33p {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1vqoz1 g.41.8.1 (Z:10-82) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure