Diaphorina citri psyllid: psy12614

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------71
MSHMCKKRNTMGTYGVHNIKFYAPEPKVINCIACEPKSSRLAVSRADQSIEIWDISETPHVDRVFIGDPLSNSIECLTWFNDRLFSGGLQGFVNEYDMRRLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQGHINLFQISDEGLLYEKLLDRQQGRILCTAWHSSGDYLVTGCAAAVRVWDIHKGHAIHKMSLDKSSKFSKNTAVWCVAFCADFTIITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSEDENYLYCAGVDPTVVCFQRTRKPQVCSTSGPEQGSSVWVRSVNRVIHEGDVKSLALHGNRLYSGGLDSYLSLSYYPPKTLVKYPCTLAQSTPVSLAKDIQHVLLQYTSHLELWSLGSAQSTDLSSHSNTTGVPLLSFPRLIVKMSAVNNATIRCSVVSNDGKYVAYSTESCVRLHSLDLDGDKPQISRIKNLPAPLFKSIFTHVLISADSTLLLAVSLNGPLYIIDLSSLEIKYCVDPYKSNLMSDVISLVQMSECKQYIVCADRKSHVVIWKNGQHHASLPRYRKPSTAMAIHPTLSTLVTVYSDHRIVEFDLNRKAFTTFSRKLETNHPNEWLSRQLPVLGIEFDPQDSSLIYLMDDSALCVINKNKSLAHADAKIPRLGPKVVSGDSSNSTHVIESKVAFHFVRRNKHLVYFGSLNDKEMLSVQVNPLSFMEKLPPTWTLTLVVGLTSNFH
cccccccccccccEEccEEEEEccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEEcccccccEEEEEEEEccEEEEECccccEEEEEcccccEEEEEECccccEEEEEEcccccEEEEECccccEEEEEcccccEEEEcccccccccEEEEEEcccccEEEEEccccEEEEEcccccEEEEECccccccccccccEEEEEEccccEEEEEcccccEEEEEccccCEEEEECcccccEEEEEEcccccEEEEECccccEEEEEcccccEEEEcccccccccEEEEEEEEEECcccEEEEEECccCEEEECcccEEEEEEcccccEEEEcccccccccEEEEccccEEEEEcccEEEEEEccccccccccccccccEEEEcccccEEEEEEEEccccEEEEEEcccccEEEEEccccEEEEEEECcccccEEEEECccccccccccEEEEEEcccccEEEEEEccccEEEEEccccCEEEEEcccccccccccEEEEEEcccccEEEEECccccEEEEEccCEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEcccccccccccccccccccccccccccCEEEEEcccccCEEEEEcccEEEEEEccccccccccccccccccccccccccccccccccccEEEEEccccEEEEECccccCEEEEECcHHHHHHccccccEEEEEEEcccccc
**HMCKKRNTMGTYGVHNIKFYAPEPKVINCIACEPKSSRLAVSRADQSIEIWDISETPHVDRVFIGDPLSNSIECLTWFNDRLFSGGLQGFVNEYDMRRLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQGHINLFQISDEGLLYEKLLDRQQGRILCTAWHSSGDYLVTGCAAAVRVWDIHKGHAIHKMSLDKSSKFSKNTAVWCVAFCADFTIITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSEDENYLYCAGVDPTVVCFQRTRKPQVCS**G**QGSSVWVRSVNRVIHEGDVKSLALHGNRLYSGGLDSYLSLSYYPPKTLVKYPCTLAQSTPVSLAKDIQHVLLQYTSHLELWSLGSAQST****HSNTTGVPLLSFPRLIVKMSAVNNATIRCSVVSNDGKYVAYSTESCVRLHSLDLDGDKPQISRIKNLPAPLFKSIFTHVLISADSTLLLAVSLNGPLYIIDLSSLEIKYCVDPYKSNLMSDVISLVQMSECKQYIVCADRKSHVVIWKNGQHHASLPRYRKPSTAMAIHPTLSTLVTVYSDHRIVEFDLNRKAFTTFSRKLETNHPNEWLSRQLPVLGIEFDPQDSSLIYLMDDSALCVINKNKSLAHADAKI********************SKVAFHFVRRNKHLVYFGSLNDKEMLSVQVNPLSFMEKLPPTWTLTLVVGLTSN**
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MSHMCKKRNTMGTYGVHNIKFYAPEPKVINCIACEPKSSRLAVSRADQSIEIWDISETPHVDRVFIGDPLSNSIECLTWFNDRLFSGGLQGFVNEYDMRRLNIKSSTAVTSGTCWCLSVHKKKRLLAAGTEQGHINLFQISDEGLLYEKLLDRQQGRILCTAWHSSGDYLVTGCAAAVRVWDIHKGHAIHKMSLDKSSKFSKNTAVWCVAFCADFTIITGDSGGFVRFWDGKTGVQWSDVKTHKKDILALTVSEDENYLYCAGVDPTVVCFQRTRKPQVCSTSGPEQGSSVWVRSVNRVIHEGDVKSLALHGNRLYSGGLDSYLSLSYYPPKTLVKYPCTLAQSTPVSLAKDIQHVLLQYTSHLELWSLGSAQSTDLSSHSNTTGVPLLSFPRLIVKMSAVNNATIRCSVVSNDGKYVAYSTESCVRLHSLDLDGDKPQISRIKNLPAPLFKSIFTHVLISADSTLLLAVSLNGPLYIIDLSSLEIKYCVDPYKSNLMSDVISLVQMSECKQYIVCADRKSHVVIWKNGQHHASLPRYRKPSTAMAIHPTLSTLVTVYSDHRIVEFDLNRKAFTTFSRKLETNHPNEWLSRQLPVLGIEFDPQDSSLIYLMDDSALCVINKNKSLAHADAKIPRLGPKVVSGDSSNSTHVIESKVAFHFVRRNKHLVYFGSLNDKEMLSVQVNPLSFMEKLPPTWTLTLVVGLTSNFH

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Cirhin confidentQ8R2N2
Cirhin confidentQ969X6
U3 small nucleolar RNA-associated protein 4 Involved in nucleolar processing of pre-18S ribosomal RNA. Required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs).confidentQ06679

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0005730 [CC]nucleolusprobableGO:0005575, GO:0043232, GO:0031981, GO:0043233, GO:0005634, GO:0044464, GO:0031974, GO:0005622, GO:0044446, GO:0070013, GO:0043229, GO:0043228, GO:0044428, GO:0005623, GO:0044424, GO:0043227, GO:0043226, GO:0044422, GO:0043231
GO:0006355 [BP]regulation of transcription, DNA-dependentprobableGO:0009889, GO:0080090, GO:0019222, GO:0060255, GO:0031326, GO:0031323, GO:0051252, GO:2000112, GO:0050794, GO:0050789, GO:0019219, GO:0010556, GO:0065007, GO:0051171, GO:2001141, GO:0008150, GO:0010468
GO:0005515 [MF]protein bindingprobableGO:0003674, GO:0005488
GO:0009987 [BP]cellular processprobableGO:0008150
GO:0032040 [CC]small-subunit processomeprobableGO:0032991, GO:0044464, GO:0030684, GO:0005623, GO:0030529, GO:0005575, GO:0044424, GO:0005622

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1ERJ, chain A
Confidence level:very confident
Coverage over the Query: 49-273,293-333,395-433
View the alignment between query and template
View the model in PyMOL
Template: 1ERJ, chain A
Confidence level:very confident
Coverage over the Query: 24-331
View the alignment between query and template
View the model in PyMOL
Template: 4GGC, chain A
Confidence level:very confident
Coverage over the Query: 206-333,394-572
View the alignment between query and template
View the model in PyMOL
Template: 2OAJ, chain A
Confidence level:confident
Coverage over the Query: 14-374,391-574,586-632
View the alignment between query and template
View the model in PyMOL
Template: 1PGU, chain A
Confidence level:confident
Coverage over the Query: 23-373,397-437,453-574,586-630,648-682
View the alignment between query and template
View the model in PyMOL

Templates for Structure Prediction

ID ?Alignment Graph ?Confidence Level ? View Alignment and Template ?
Query
3ei3, chain Aprobable Alignment | Template Structure