Diaphorina citri psyllid: psy1282

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------
MKYIILCSQENFGGTTYFYQAPSSGTEVPGAAGPAPGDDLSAPGVLSSPPGYTMHPGTPPHVRHKPPNAATVDHSSFYMSENIRAEIQHKNALTLVSANPELFPELPLEVDNYHDLQDDLTALGKLILAMTCRSLMAVQRENLQTSIDLMARSYSADLRNLILYLLSVHQKRTVVDLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINERPELNLDPTWSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLMSRDEQSVLVVSYAELKQCLDQSFHELSSSASLTPKSTLPLYLLSVHQKRTVVDLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINERPELNLDPTWSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLMSRDEQSVLVVSYAELKQCLDQSFHELSSSASLTPKSTLPL
ccEEEEEEECcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCEECcccccEEEcccccEEEccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHccccccccccccHHHHHHHHcccccccccEEEEEEccccEEEEEEHHHHHHHHHHHHHHHHHccccccccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHccccccccccccccHHHHHHHHcccccccccEEEEEEccccEEEEEEHHHHHHHHHHHHHHHHHcccccccccccc
*KYIILCSQENFGGTTYFYQAP*********************GVLSSPPGYTMHPGTPPH**********VDHSSFYMSENIRAEIQHKNALTLVSANPELFPELPLEVDNYHDLQDDLTALGKLILAMTCRSLMAVQRENLQTSIDLMARSYSADLRNLILYLLSVHQKRTVVDLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINERPELNLDPTWSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLMSRDEQSVLVVSYAELKQCLDQSFHELSSSASLTPKSTLPLYLLSVHQKRTVVDLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINERPELNLDPTWSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLMSRDEQSVLVVSYAELKQCLDQSFH****************
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MKYIILCSQENFGGTTYFYQAPSSGTEVPGAAGPAPGDDLSAPGVLSSPPGYTMHPGTPPHVRHKPPNAATVDHSSFYMSENIRAEIQHKNALTLVSANPELFPELPLEVDNYHDLQDDLTALGKLILAMTCRSLMAVQRENLQTSIDLMARSYSADLRNLILYLLSVHQKRTVVDLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINERPELNLDPTWSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLMSRDEQSVLVVSYAELKQCLDQSFHELSSSASLTPKSTLPLYLLSVHQKRTVVDLMPMIGARYYTQLDAVQLHGDSLENELSKEMENGRLFRLLVKLGTINERPELNLDPTWSETGDRYMLKLFRDYLLHQVQEDGRPWLDMSHIVHCLNKLDAGTQEKICLMSRDEQSVLVVSYAELKQCLDQSFHELSSSASLTPKSTLPL

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
PAB-dependent poly(A)-specific ribonuclease subunit 3 Functions in cytoplasmic mRNA decay. Component of the Pan nuclease complex.confidentP0CD65
PAB-dependent poly(A)-specific ribonuclease subunit 3 Functions in cytoplasmic mRNA decay. As part of the Pan nuclease complex, recruits polyadenylate-binding protein which in turn stimulates PAN2 nuclease activity.confidentQ58A45
PAB-dependent poly(A)-specific ribonuclease subunit 3 Functions in cytoplasmic mRNA decay. Component of the Pan nuclease complex.confidentA1L1C7

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0006605 [BP]protein targetingprobableGO:0033036, GO:0034613, GO:0046907, GO:0070727, GO:0006886, GO:0006810, GO:0045184, GO:0044765, GO:0008104, GO:0008150, GO:0071702, GO:0015031, GO:0044763, GO:0009987, GO:0051234, GO:0051649, GO:0051179, GO:0044699, GO:0051641
GO:0000288 [BP]nuclear-transcribed mRNA catabolic process, deadenylation-dependent decayprobableGO:0090304, GO:0034641, GO:0006807, GO:1901360, GO:1901361, GO:0006139, GO:1901575, GO:0044265, GO:0044260, GO:0071704, GO:0006401, GO:0006402, GO:0044238, GO:0009987, GO:0006725, GO:0046700, GO:0008150, GO:0008152, GO:0034655, GO:0009056, GO:0009057, GO:0044248, GO:0046483, GO:0016070, GO:0016071, GO:0044270, GO:0044237, GO:0043170, GO:0000956, GO:0019439
GO:0005813 [CC]centrosomeprobableGO:0005856, GO:0005575, GO:0015630, GO:0043232, GO:0044464, GO:0005623, GO:0005815, GO:0044446, GO:0043229, GO:0043228, GO:0044430, GO:0044424, GO:0005622, GO:0043226, GO:0044422
GO:0000932 [CC]cytoplasmic mRNA processing bodyprobableGO:0005737, GO:0035770, GO:0043232, GO:0044464, GO:0043229, GO:0005623, GO:0030529, GO:0005575, GO:0044444, GO:0043228, GO:0044424, GO:0032991, GO:0005622, GO:0043226

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 3LIJ, chain A
Confidence level:probable
Coverage over the Query: 116-275
View the alignment between query and template
View the model in PyMOL