Diaphorina citri psyllid: psy12903

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------
MADDNIEPDQASFDKGYSEDANQVNQDDLILQQSKNIEKEISDSIMLVGDKEDIMVLEQQYIGDEVYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFALLESLYHLDFRLIAEKSKDKLLELGFQKFTLEDFHDQFMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLLYRPGHYDILYPL
ccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHccccccccHHHHHHHHcccccccccHHHHHHHHHHccccEEEEEEEccccccccCCccccccccEEEEEEccccccccccc
****************************************ISDSIMLVGDKEDIMVLEQQYIGDEVYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFALLESLYHLDFRLIAEKSKDKLLELGFQKFTLEDFHDQFMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLLYRPGHYDILYPL
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MADDNIEPDQASFDKGYSEDANQVNQDDLILQQSKNIEKEISDSIMLVGDKEDIMVLEQQYIGDEVYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFALLESLYHLDFRLIAEKSKDKLLELGFQKFTLEDFHDQFMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLLYRPGHYDILYPL

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Ubiquitin thioesterase otubain-like Possible hydrolase that can remove conjugated ubiquitin from proteins in vitro and may therefore play an important regulatory role at the level of protein turnover by preventing degradation.very confidentQ9VL00
Ubiquitin thioesterase otubain-like Hydrolase that can remove conjugated ubiquitin from proteins and plays an important regulatory role at the level of protein turnover by preventing degradation. Specifically cleaves 'Lys-48'-linked polyubiquitin.confidentQ9XVR6
Ubiquitin thioesterase OTUB1 Hydrolase that can remove conjugated ubiquitin from proteins and plays an important regulatory role at the level of protein turnover by preventing degradation. Regulator of T-cell anergy, a phenomenon that occurs when T-cells are rendered unresponsive to antigen rechallenge and no longer respond to their cognate antigen. Acts via its interaction with RNF128/GRAIL, a crucial inductor of CD4 T-cell anergy. Isoform 1 destabilizes RNF128, leading to prevent anergy. In contrast, isoform 2 stabilizes RNF128 and promotes anergy. Surprisingly, it regulates RNF128-mediated ubiquitination, but does not deubiquitinate polyubiquitinated RNF128. Deubiquitinates estrogen receptor alpha (ESR1). Mediates deubiquitination of 'Lys-48'-linked polyubiquitin chains, but not 'Lys-63'-linked polyubiquitin chains. Not able to cleave di-ubiquitin. Also capable of removing NEDD8 from NEDD8 conjugates, but with a nuch lower preference compared to 'Lys-48'-linked ubiquitin.confidentQ96FW1

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0071108 [BP]protein K48-linked deubiquitinationconfidentGO:0044267, GO:0044260, GO:0044238, GO:0019538, GO:0009987, GO:0070647, GO:0070646, GO:0006464, GO:0043170, GO:0071704, GO:0043412, GO:0036211, GO:0008150, GO:0044237, GO:0008152, GO:0016579
GO:0070536 [BP]protein K63-linked deubiquitinationprobableGO:0044267, GO:0044260, GO:0044238, GO:0019538, GO:0009987, GO:0070647, GO:0070646, GO:0006464, GO:0043170, GO:0071704, GO:0043412, GO:0036211, GO:0008150, GO:0044237, GO:0008152, GO:0016579
GO:0008242 [MF]omega peptidase activityprobableGO:0016787, GO:0003824, GO:0008238, GO:0070011, GO:0003674, GO:0008233
GO:0043130 [MF]ubiquitin bindingprobableGO:0003674, GO:0032182, GO:0005488, GO:0005515
GO:0004843 [MF]ubiquitin-specific protease activityprobableGO:0016787, GO:0019783, GO:0003824, GO:0070011, GO:0003674, GO:0008233, GO:0008234
GO:0019784 [MF]NEDD8-specific protease activityprobableGO:0016787, GO:0019783, GO:0003824, GO:0070011, GO:0003674, GO:0008233, GO:0008234
GO:0006520 [BP]cellular amino acid metabolic processprobableGO:0044238, GO:0044710, GO:1901564, GO:0006082, GO:0044237, GO:0009987, GO:0019752, GO:0071704, GO:0006807, GO:0008150, GO:0044281, GO:0008152, GO:0043436
GO:0005886 [CC]plasma membraneprobableGO:0005575, GO:0044464, GO:0016020, GO:0071944, GO:0005623
GO:1901315 [BP]negative regulation of histone H2A K63-linked ubiquitinationprobableGO:0033044, GO:0009892, GO:0080090, GO:0019222, GO:0033043, GO:0031324, GO:0031323, GO:0051129, GO:0051128, GO:0031057, GO:0031056, GO:0050789, GO:0044699, GO:0051248, GO:0010605, GO:0051246, GO:1900044, GO:1900045, GO:0033183, GO:0033182, GO:0065007, GO:0031399, GO:0031396, GO:0031397, GO:0060255, GO:0009987, GO:0050794, GO:0044763, GO:0048519, GO:1901314, GO:0032269, GO:0032268, GO:0031400, GO:0010639, GO:0008150, GO:0048523, GO:2001251
GO:0006281 [BP]DNA repairprobableGO:0090304, GO:0034641, GO:0006807, GO:0044699, GO:0006139, GO:0051716, GO:0044260, GO:0071704, GO:1901360, GO:0009987, GO:0006725, GO:0006974, GO:0006950, GO:0044763, GO:0008152, GO:0046483, GO:0044238, GO:0050896, GO:0044237, GO:0043170, GO:0033554, GO:0006259, GO:0008150
GO:2000780 [BP]negative regulation of double-strand break repairprobableGO:0009892, GO:0080090, GO:0019222, GO:0048585, GO:0031324, GO:0048583, GO:0006282, GO:0050789, GO:0051052, GO:0010605, GO:0019219, GO:0065007, GO:0048519, GO:0051053, GO:0045934, GO:0060255, GO:0031323, GO:0050794, GO:0008150, GO:0051171, GO:0051172, GO:2001021, GO:2001020, GO:0080134, GO:0080135, GO:2000779, GO:0045738, GO:0048523
GO:0005737 [CC]cytoplasmprobableGO:0044424, GO:0005575, GO:0044464, GO:0005623, GO:0005622
GO:0006508 [BP]proteolysisprobableGO:0044238, GO:0019538, GO:0043170, GO:0071704, GO:0008150, GO:0008152
GO:0031625 [MF]ubiquitin protein ligase bindingprobableGO:0003674, GO:0044389, GO:0005515, GO:0019899, GO:0005488

Prediction of Enzyme Commission Number ?

EC Number ?Description ?Confidence Level ?
3.-.-.-Hydrolases.probable
3.4.-.-Acting on peptide bonds (peptide hydrolases).probable
3.4.19.-Omega peptidases.probable
3.4.19.12Ubiquitinyl hydrolase 1.probable

Spatial Structural Prediction

Structural Models Based on Templates

Template: 4DDG, chain A
Confidence level:very confident
Coverage over the Query: 20-266
View the alignment between query and template
View the model in PyMOL