Psyllid ID: psy12903

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------
Protein Sequence
MADDNIEPDQASFDKGYSEDANQVNQDDLILQQSKNIEKEISDSIMLVGDKEDIMVLEQQYIGDEVYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFALLESLYHLDFRLIAEKSKDKLLELGFQKFTLEDFHDQFMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLLYRPGHYDILYPL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHccccccccHHHHHHHHcccccccccHHHHHHHHHHccccEEEEEEEccccccccEEccccccccEEEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHcccHHHHHHHHHHHHHccHHEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHcHHHHHHHccccccHHHHHHHHcccHcHHHcHHHHHHHHHHccccEEEEEEEccccccccccccccccccEEEEEEccccccEEEcc
Coil and Loop (DISEMBL)
maddniepdqasfdkgysedanqvnqddLILQQSKNIEKEISDsimlvgdkEDIMVLEQQYIGDEVYKGKVKDLARKYSnlrrtrpdgncffRSFGFALLESLYHLDFRLIAEKSKDKLLELGFQKFTLEDFHDQFMEVVNLiskpetnedtLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEvepmfkesdhIHIIALSTALDVGVRVrymdrgdsteaiahdfpedkppqihllyrpghydilypl
Flexible Loop (DISEMBL)
maddniepdqasfdkgysedaNQVNQDDLILQQSKNIEKEISDSIMLVGDKEDIMVLEQQyigdevykgkVKDLARKYsnlrrtrpdgnCFFRSFGFALLESLYHLDFRLIAEKSKDKLLELGFQKFTLEDFHDQFMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEaiahdfpedkppqihllyrpghydilypl
Low Complexity Region (SEG)
MADDNIEPDQASFDKGYSEDANQVNQDDLILQQSKNIEKEISDSIMLVGDKEDIMVLEQQYIGDEVYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFALLESLYHLDFRLIAEKSKDKLLELGFQKFTLEDFHDQFMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLLYRPGHYDILYPL
Disordered region (IsUnstruct)
****************************************ISDSIMLVGDKEDIMVLEQQYIGDEVYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFALLESLYHLDFRLIAEKSKDKLLELGFQKFTLEDFHDQFMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAH********QIHLLYRPGHYDILY**
Disordered Region (DISOPRED)
****************************************************DIMVLEQQYIGDEVYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFALLESLYHLDFRLIAEKSKDKLLELGFQKFTLEDFHDQFMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLLYRPGHYDILYPL
Disordered Region (DISEMBL)
********DQASFDKGYSEDANQVNQDDLILQQSKNIEKEISDSIMLVGDKEDIMVLEQQYIGDEVYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFALLESLYHLDFRLIAEKSKDKLLELGFQKFTLEDFHDQFMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLLYRPGHYDILYPL
Disordered Region (DISPRO)
**********************QVNQDDLILQQSKNIEKEISDSIMLVGDKEDIMVLEQQYIGDEVYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFALLESLYHLDFRLIAEKSKDKLLELGFQKFTLEDFHDQFMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLLYRPGHYDILYPL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADDNIEPDQASFDKGYSEDANQVNQDDLILQQSKNIEKEISDSIMLVGDKEDIMVLEQQYIGDEVYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFALLESLYHLDFRLIAEKSKDKLLELGFQKFTLEDFHDQFMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLLYRPGHYDILYPL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	267	2.2.26 [Sep-21-2011]
Q9VL00	262	Ubiquitin thioesterase ot	yes	N/A	0.917	0.935	0.564	1e-79
B2RYG6	271	Ubiquitin thioesterase OT	yes	N/A	0.917	0.904	0.5	9e-68
Q7TQI3	271	Ubiquitin thioesterase OT	yes	N/A	0.917	0.904	0.5	9e-68
Q96FW1	271	Ubiquitin thioesterase OT	yes	N/A	0.917	0.904	0.5	9e-68
Q8LG98	306	Ubiquitin thioesterase ot	yes	N/A	0.883	0.771	0.391	7e-42
Q9CQX0	234	Ubiquitin thioesterase OT	no	N/A	0.827	0.944	0.364	2e-40
Q96DC9	234	Ubiquitin thioesterase OT	no	N/A	0.827	0.944	0.364	4e-40
Q9XVR6	284	Ubiquitin thioesterase ot	yes	N/A	0.958	0.901	0.360	1e-36
A8XDJ2	288	Ubiquitin thioesterase ot	N/A	N/A	0.902	0.836	0.350	4e-36

>sp|Q9VL00|OTUBL_DROME Ubiquitin thioesterase otubain-like OS=Drosophila melanogaster GN=CG4968 PE=2 SV=1

 Score =  296 bits (757), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 144/255 (56%), Positives = 190/255 (74%), Gaps = 10/255 (3%)

Query: 22  NQVNQDDLILQQSKNIEKEISDSIMLVGDKEDIMVLEQQYIGDEVYKGKVKDLARKYSNL 81
           N  N+D+LI+QQ ++IEKEISD+  LV ++  +  L  +Y GDE++  K++DL++KY  +
Sbjct: 7   NDGNRDELIIQQKRDIEKEISDTTPLVSEQLPLTCLYAEYSGDEIFTAKIQDLSKKYKFI 66

Query: 82  RRTRPDGNCFFRSFGFALLESLY-----HLDFRLIAEKSKDKLLELGFQKFTLEDFHDQF 136
           RRTRPDGNCFFR+F ++ LE L      + +F+ +AE+SK+KL++LGF  FTLEDFH+ F
Sbjct: 67  RRTRPDGNCFFRAFAYSYLEYLISNTSAYQEFKKLAEESKEKLVQLGFPSFTLEDFHETF 126

Query: 137 MEVVNLISK-----PETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEG 191
           MEV+  +S        T +D L ++FN + YSDYVVVYLRLI SG+LQ++ADFYQNFIEG
Sbjct: 127 MEVIQRVSPDNAGGHSTVQDELHKIFNEQGYSDYVVVYLRLITSGKLQEEADFYQNFIEG 186

Query: 192 NRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQ 251
           + T+  F   EVEPM+KESDHIHIIAL TAL  GVRV Y+DRG+     AHDFPE   P+
Sbjct: 187 DLTIEAFRHLEVEPMYKESDHIHIIALCTALGAGVRVEYLDRGEGGTVKAHDFPEGSEPR 246

Query: 252 IHLLYRPGHYDILYP 266
           I+L+YRPGHYDILYP
Sbjct: 247 IYLIYRPGHYDILYP 261

Possible hydrolase that can remove conjugated ubiquitin from proteins in vitro and may therefore play an important regulatory role at the level of protein turnover by preventing degradation.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2

>sp|B2RYG6|OTUB1_RAT Ubiquitin thioesterase OTUB1 OS=Rattus norvegicus GN=Otub1 PE=1 SV=1

 Score =  256 bits (655), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 128/256 (50%), Positives = 184/256 (71%), Gaps = 11/256 (4%)

Query: 18  SEDANQVNQDDLILQQSKNIEKEISDSIMLVGDKEDIMVLEQQYIGDE-VYKGKVKDLAR 76
           SE  N +  D+ I+ Q   I++EI+    LV ++ ++ VL ++Y  D+ +Y+ K+KDL +
Sbjct: 18  SEGVNCLAYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHK 77

Query: 77  KYSNLRRTRPDGNCFFRSFGFALLESLYHLD-------FRLIAEKSKDKLLELGFQKFTL 129
           KYS +R+TRPDGNCF+R+FGF+ LE+L  LD       F+ ++ KSK+ L+  GF +FT+
Sbjct: 78  KYSYIRKTRPDGNCFYRAFGFSHLEAL--LDDSKELQRFKAVSAKSKEDLVSQGFTEFTI 135

Query: 130 EDFHDQFMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFI 189
           EDFH+ FM+++  + K +T+   L+  FN++  SDY+VVYLRL+ SG LQ+++ F+++FI
Sbjct: 136 EDFHNTFMDLIEQVEK-QTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFI 194

Query: 190 EGNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKP 249
           EG RTV EFC+QEVEPM KESDHIHIIAL+ AL V ++V YMDRG+      H FPE   
Sbjct: 195 EGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHVFPEGSE 254

Query: 250 PQIHLLYRPGHYDILY 265
           P+++LLYRPGHYDILY
Sbjct: 255 PKVYLLYRPGHYDILY 270

Hydrolase that can remove conjugated ubiquitin from proteins in vitro and may therefore play an important regulatory role at the level of protein turnover by preventing degradation. Regulator of T-cell anergy, a phenomenon that occurs when T-cells are rendered unresponsive to antigen rechallenge and no longer respond to their cognate antigen. Acts via its interaction with RNF128/GRAIL. Surprisingly, it regulates RNF128-mediated ubiquitination, but does not deubiquitinate polyubiquitinated RNF128. Deubiquitinates estrogen receptor alpha (ESR1). Mediates deubiquitination of 'Lys-48'-linked polyubiquitin chains, but not 'Lys-63'-linked polyubiquitin chains. Not able to cleave di-ubiquitin. Also capable of removing NEDD8 from NEDD8 conjugates, but with a nuch lower preference compared to 'Lys-48'-linked ubiquitin.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q7TQI3|OTUB1_MOUSE Ubiquitin thioesterase OTUB1 OS=Mus musculus GN=Otub1 PE=1 SV=2

 Score =  256 bits (655), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 128/256 (50%), Positives = 184/256 (71%), Gaps = 11/256 (4%)

Query: 18  SEDANQVNQDDLILQQSKNIEKEISDSIMLVGDKEDIMVLEQQYIGDE-VYKGKVKDLAR 76
           SE  N +  D+ I+ Q   I++EI+    LV ++ ++ VL ++Y  D+ +Y+ K+KDL +
Sbjct: 18  SEGVNCLAYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHK 77

Query: 77  KYSNLRRTRPDGNCFFRSFGFALLESLYHLD-------FRLIAEKSKDKLLELGFQKFTL 129
           KYS +R+TRPDGNCF+R+FGF+ LE+L  LD       F+ ++ KSK+ L+  GF +FT+
Sbjct: 78  KYSYIRKTRPDGNCFYRAFGFSHLEAL--LDDSKELQRFKAVSAKSKEDLVSQGFTEFTI 135

Query: 130 EDFHDQFMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFI 189
           EDFH+ FM+++  + K +T+   L+  FN++  SDY+VVYLRL+ SG LQ+++ F+++FI
Sbjct: 136 EDFHNTFMDLIEQVEK-QTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFI 194

Query: 190 EGNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKP 249
           EG RTV EFC+QEVEPM KESDHIHIIAL+ AL V ++V YMDRG+      H FPE   
Sbjct: 195 EGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHVFPEGSE 254

Query: 250 PQIHLLYRPGHYDILY 265
           P+++LLYRPGHYDILY
Sbjct: 255 PKVYLLYRPGHYDILY 270

Hydrolase that can remove conjugated ubiquitin from proteins in vitro and may therefore play an important regulatory role at the level of protein turnover by preventing degradation. Regulator of T-cell anergy, a phenomenon that occurs when T-cells are rendered unresponsive to antigen rechallenge and no longer respond to their cognate antigen. Acts via its interaction with RNF128/GRAIL. Surprisingly, it regulates RNF128-mediated ubiquitination, but does not deubiquitinate polyubiquitinated RNF128. Deubiquitinates estrogen receptor alpha (ESR1). Mediates deubiquitination of 'Lys-48'-linked polyubiquitin chains, but not 'Lys-63'-linked polyubiquitin chains. Not able to cleave di-ubiquitin. Also capable of removing NEDD8 from NEDD8 conjugates, but with a nuch lower preference compared to 'Lys-48'-linked ubiquitin.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q96FW1|OTUB1_HUMAN Ubiquitin thioesterase OTUB1 OS=Homo sapiens GN=OTUB1 PE=1 SV=2

 Score =  256 bits (655), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 128/256 (50%), Positives = 184/256 (71%), Gaps = 11/256 (4%)

Query: 18  SEDANQVNQDDLILQQSKNIEKEISDSIMLVGDKEDIMVLEQQYIGDE-VYKGKVKDLAR 76
           SE  N +  D+ I+ Q   I++EI+    LV ++ ++ VL ++Y  D+ +Y+ K+KDL +
Sbjct: 18  SEGVNCLAYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHK 77

Query: 77  KYSNLRRTRPDGNCFFRSFGFALLESLYHLD-------FRLIAEKSKDKLLELGFQKFTL 129
           KYS +R+TRPDGNCF+R+FGF+ LE+L  LD       F+ ++ KSK+ L+  GF +FT+
Sbjct: 78  KYSYIRKTRPDGNCFYRAFGFSHLEAL--LDDSKELQRFKAVSAKSKEDLVSQGFTEFTI 135

Query: 130 EDFHDQFMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFI 189
           EDFH+ FM+++  + K +T+   L+  FN++  SDY+VVYLRL+ SG LQ+++ F+++FI
Sbjct: 136 EDFHNTFMDLIEQVEK-QTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFI 194

Query: 190 EGNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKP 249
           EG RTV EFC+QEVEPM KESDHIHIIAL+ AL V ++V YMDRG+      H FPE   
Sbjct: 195 EGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEGSE 254

Query: 250 PQIHLLYRPGHYDILY 265
           P+++LLYRPGHYDILY
Sbjct: 255 PKVYLLYRPGHYDILY 270

Hydrolase that can remove conjugated ubiquitin from proteins and plays an important regulatory role at the level of protein turnover by preventing degradation. Regulator of T-cell anergy, a phenomenon that occurs when T-cells are rendered unresponsive to antigen rechallenge and no longer respond to their cognate antigen. Acts via its interaction with RNF128/GRAIL, a crucial inductor of CD4 T-cell anergy. Isoform 1 destabilizes RNF128, leading to prevent anergy. In contrast, isoform 2 stabilizes RNF128 and promotes anergy. Surprisingly, it regulates RNF128-mediated ubiquitination, but does not deubiquitinate polyubiquitinated RNF128. Deubiquitinates estrogen receptor alpha (ESR1). Mediates deubiquitination of 'Lys-48'-linked polyubiquitin chains, but not 'Lys-63'-linked polyubiquitin chains. Not able to cleave di-ubiquitin. Also capable of removing NEDD8 from NEDD8 conjugates, but with a nuch lower preference compared to 'Lys-48'-linked ubiquitin.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q8LG98|OTUBL_ARATH Ubiquitin thioesterase otubain-like OS=Arabidopsis thaliana GN=At1g28120 PE=2 SV=2

 Score =  171 bits (432), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 103/263 (39%), Positives = 144/263 (54%), Gaps = 27/263 (10%)

Query: 31  LQQSKNIEKEISDSIMLVGDKEDIMVLEQQY-IGDEVYKGKVKDLARKYSNLRRTRPDGN 89
           ++   + ++E +  +  VGDKE +  L  +Y  G  +   K+K L  +Y  +RRTR DGN
Sbjct: 32  VEDQPSFQEEEAAKVPYVGDKEPLSSLAAEYQSGSPILLEKIKILDSQYIGIRRTRGDGN 91

Query: 90  CFFRSFGFALLESLYHLD-------FRLIAEKSKDKLLELGFQKFTLEDFHDQFMEVVNL 142
           CFFRSF F+ LE +            ++  EK +  L  LG+  FT EDF   F+E ++ 
Sbjct: 92  CFFRSFMFSYLEHILESQDRAEVDRIKVNVEKCRKTLQNLGYTDFTFEDFFALFLEQLDD 151

Query: 143 I---SKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEG--NRTVFE 197
           I   ++   + D LV    ++  SDY+V++ R + +G ++  ADF++ FI G  N TV +
Sbjct: 152 ILQGTEESISYDELVNRSRDQSVSDYIVMFFRFVTAGDIRTRADFFEPFITGLSNATVDQ 211

Query: 198 FCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIA----HDF--------- 244
           FC+  VEPM +ESDHIHI ALS AL V +RV Y+DR            HDF         
Sbjct: 212 FCKSSVEPMGEESDHIHITALSDALGVAIRVVYLDRSSCDSGGVTVNHHDFVPVGITNEK 271

Query: 245 -PEDKPPQIHLLYRPGHYDILYP 266
             E   P I LLYRPGHYDILYP
Sbjct: 272 DEEASAPFITLLYRPGHYDILYP 294

Possible hydrolase that can remove conjugated ubiquitin from proteins in vitro and may therefore play an important regulatory role at the level of protein turnover by preventing degradation.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q9CQX0|OTUB2_MOUSE Ubiquitin thioesterase OTUB2 OS=Mus musculus GN=Otub2 PE=2 SV=1

 Score =  166 bits (419), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 83/228 (36%), Positives = 146/228 (64%), Gaps = 7/228 (3%)

Query: 44  SIMLVGDKEDIMVLEQQYIGDEVYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFALLESL 103
           S  L+ +K DI+ + + +  + +Y+ K+++L+++++++R+T+ DGNCF+R+ G++ LESL
Sbjct: 5   SFNLISEKCDILSILRDHPENRIYQRKIQELSKRFTSIRKTKGDGNCFYRALGYSYLESL 64

Query: 104 YH-----LDFRLIAEKSKDKLLELGFQKFTLEDFHDQFMEVVNLISKPETNEDTLVEVFN 158
                  L F+    ++ + LL  GF++    +F + F  VV L+ K +++  +L++VFN
Sbjct: 65  LGKSREILKFKERVLQTPNDLLAAGFEEHKFRNFFNAFYSVVELVEK-DSSVSSLLKVFN 123

Query: 159 NKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIAL 218
           ++  SD +V +LRL+ S  ++  ADF+++FI+    + +FC  EVEPM  E DH+ I AL
Sbjct: 124 DQSSSDRIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMAMECDHVQITAL 183

Query: 219 STALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLLYRPGHYDILYP 266
           S AL++ ++V Y+D  D T    H FPE   P ++LLY+  HY+ILY 
Sbjct: 184 SQALNIALQVEYVDEMD-TALNHHVFPEAAIPSVYLLYKTSHYNILYA 230

Hydrolase that can remove conjugated ubiquitin from proteins in vitro and may therefore play an important regulatory role at the level of protein turnover by preventing degradation. Mediates deubiquitination of both 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains, with a preference for 'Lys-63'-linked polyubiquitin chains.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q96DC9|OTUB2_HUMAN Ubiquitin thioesterase OTUB2 OS=Homo sapiens GN=OTUB2 PE=1 SV=2

 Score =  164 bits (416), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 83/228 (36%), Positives = 143/228 (62%), Gaps = 7/228 (3%)

Query: 44  SIMLVGDKEDIMVLEQQYIGDEVYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFALLESL 103
           S  L+ +K DI+ + + +  + +Y+ K+++L+++++ +R+T+ DGNCF+R+ G++ LESL
Sbjct: 5   SFNLISEKCDILSILRDHPENRIYRRKIEELSKRFTAIRKTKGDGNCFYRALGYSYLESL 64

Query: 104 YH-----LDFRLIAEKSKDKLLELGFQKFTLEDFHDQFMEVVNLISKPETNEDTLVEVFN 158
                    F+    ++ + LL  GF++    +F + F  VV L+ K + +  +L++VFN
Sbjct: 65  LGKSREIFKFKERVLQTPNDLLAAGFEEHKFRNFFNAFYSVVELVEK-DGSVSSLLKVFN 123

Query: 159 NKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIAL 218
           ++  SD++V +LRL+ S  ++  ADF+++FI+    + +FC  EVEPM  E DHI I AL
Sbjct: 124 DQSASDHIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITAL 183

Query: 219 STALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLLYRPGHYDILYP 266
           S AL + ++V Y+D  D T    H FPE   P ++LLY+  HY+ILY 
Sbjct: 184 SQALSIALQVEYVDEMD-TALNHHVFPEAATPSVYLLYKTSHYNILYA 230

Hydrolase that can remove conjugated ubiquitin from proteins in vitro and may therefore play an important regulatory role at the level of protein turnover by preventing degradation. Mediates deubiquitination of both 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains, with a preference for 'Lys-63'-linked polyubiquitin chains.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q9XVR6|OTUBL_CAEEL Ubiquitin thioesterase otubain-like OS=Caenorhabditis elegans GN=otub-1 PE=1 SV=1

 Score =  153 bits (386), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/272 (36%), Positives = 148/272 (54%), Gaps = 16/272 (5%)

Query: 7   EPDQASFDKGYSEDANQVNQDDLILQ--QSKNIEKEISDSIMLVGDKEDIMVLEQQYIGD 64
           EP Q S D G + +A  V  D+++LQ  Q K IE E   S+ LV       +L  +Y  +
Sbjct: 4   EP-QKSDDNGQAAEA-VVTDDEIVLQDQQLKTIEDE-QKSVPLVATLAPFSILCAEYDNE 60

Query: 65  --EVYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFALLESLYHLDFRL--IAEKSKD--- 117
               +  K  +L+  Y  +R  R DGNCF+R+    L+E +     RL      S+D   
Sbjct: 61  TSAAFLSKATELSEVYGEIRYIRGDGNCFYRAILVGLIEIMLKDRARLEKFIASSRDWTR 120

Query: 118 KLLELGFQKFTLEDFHDQFMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQ 177
            L+ELGF  +T  DF D F+E +  I      E+ +  + N+   ++Y++++ RLI S  
Sbjct: 121 TLVELGFPDWTCTDFCDFFIEFLEKIHSGVHTEEAVYTILNDDGSANYILMFFRLITSAF 180

Query: 178 LQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDST 237
           L+Q+++ Y  FI+   TV ++C QE+EPM+K++DH+ I +L  A    VR+ YMDR  + 
Sbjct: 181 LKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAP 240

Query: 238 EAIAH-DFPEDK---PPQIHLLYRPGHYDILY 265
               H D P D     P+I LLYRPGHYD++Y
Sbjct: 241 NGGWHYDIPSDDQQIAPEITLLYRPGHYDVIY 272

Hydrolase that can remove conjugated ubiquitin from proteins and plays an important regulatory role at the level of protein turnover by preventing degradation. Specifically cleaves 'Lys-48'-linked polyubiquitin.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|A8XDJ2|OTUBL_CAEBR Ubiquitin thioesterase otubain-like OS=Caenorhabditis briggsae GN=otub-1 PE=3 SV=1

 Score =  152 bits (383), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 90/257 (35%), Positives = 147/257 (57%), Gaps = 16/257 (6%)

Query: 24  VNQDDLILQ--QSKNIEKEISDSIMLVGDKEDIMVLEQQYIGDEV--YKGKVKDLARKYS 79
             +D+LILQ  Q K IE E   S  LVG+K     L   Y  +    +  K  +LA+ YS
Sbjct: 18  TTEDELILQDQQMKRIEDEQKAS-PLVGEKMPCATLVSLYDQETAPAFFEKANELAKVYS 76

Query: 80  NLRRTRPDGNCFFRSFGFALLESLYHLDFRLI-----AEKSKDKLLELGFQKFTLEDFHD 134
           ++R  R DGNCF R+    L+E L +   RL+      ++  ++L++LGF  +T  DF +
Sbjct: 77  HIRFIRGDGNCFIRAIQVGLVEILLNDKERLVKFIASCKEWTERLVKLGFPDWTCTDFCE 136

Query: 135 QFMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRT 194
            F+E +  +      ++ +  +FN+ + ++Y++++ RLI SG L++ A  Y+ F++   +
Sbjct: 137 FFIEFIEKVRDGIHQKEDVFRIFNDDNTANYLLMFFRLITSGYLKEHAAEYEPFLDEGMS 196

Query: 195 VFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTE-AIAHDFPEDK----- 248
           + ++C  E+E M+KESDH+ IIAL  AL++ +R+ YMDR  +      H+ P+       
Sbjct: 197 LAQYCETEIEAMWKESDHLGIIALVRALNIRIRIEYMDRNAAPNGGTHHNLPDGHDNATF 256

Query: 249 PPQIHLLYRPGHYDILY 265
            P I LLYRPGHYD++Y
Sbjct: 257 TPDITLLYRPGHYDLIY 273

Hydrolase that can remove conjugated ubiquitin from proteins and plays an important regulatory role at the level of protein turnover by preventing degradation. Specifically cleaves 'Lys-48'-linked polyubiquitin.

Caenorhabditis briggsae (taxid: 6238)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	267
193591885	261	PREDICTED: ubiquitin thioesterase otubai	0.898	0.919	0.668	1e-89
242016414	267	conserved hypothetical protein [Pediculu	0.906	0.906	0.647	7e-89
156551583	264	PREDICTED: ubiquitin thioesterase otubai	0.925	0.935	0.642	1e-88
332025165	265	Ubiquitin thioesterase otubain-like prot	0.910	0.916	0.652	2e-88
307179540	264	Ubiquitin thioesterase otubain-like [Cam	0.932	0.943	0.639	2e-88
307206375	265	Ubiquitin thioesterase otubain-like [Har	0.943	0.950	0.633	9e-88
340711926	264	PREDICTED: LOW QUALITY PROTEIN: ubiquiti	0.910	0.920	0.638	1e-86
350402738	264	PREDICTED: ubiquitin thioesterase otubai	0.910	0.920	0.634	4e-86
383849122	264	PREDICTED: ubiquitin thioesterase otubai	0.910	0.920	0.638	2e-85
357618050	275	hypothetical protein KGM_09047 [Danaus p	0.913	0.887	0.607	5e-82

>gi|193591885|ref|XP_001950979.1| PREDICTED: ubiquitin thioesterase otubain-like [Acyrthosiphon pisum]

 Score =  335 bits (859), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 165/247 (66%), Positives = 195/247 (78%), Gaps = 7/247 (2%)

Query: 24  VNQDDLILQQSKNIEKEISDSIMLVGDKEDIMVLEQQYIGDEVYKGKVKDLARKYSNLRR 83
           + QD+LI+QQ + IEKEISDSI+L+G KE++  LE +YI D VY  K++DL +KY  +RR
Sbjct: 15  LEQDELIIQQHREIEKEISDSILLIGQKEELTSLETEYINDPVYLTKIQDLNKKYKCMRR 74

Query: 84  TRPDGNCFFRSFGFALLESLY-----HLDFRLIAEKSKDKLLELGFQKFTLEDFHDQFME 138
            RPDGNCFFRSF FA  E L      +  F+  A KSKD+L+  GF +FTLEDFHD FME
Sbjct: 75  ARPDGNCFFRSFAFAYFEYLMDHNEEYKHFKERALKSKDELISCGFTQFTLEDFHDTFME 134

Query: 139 VVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEF 198
           VVNLI   E   + L + FN + YSDYVVVYLRLI SGQLQ+DA+FY++FIEG+RTV EF
Sbjct: 135 VVNLIG--EGQHEKLYDTFNMQGYSDYVVVYLRLITSGQLQKDAEFYKHFIEGDRTVVEF 192

Query: 199 CRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLLYRP 258
           C QEVEPMFKESDHIHIIALSTAL+VGVRVRYMDRG+S+EAIAHDFPE  P  +HLLYRP
Sbjct: 193 CHQEVEPMFKESDHIHIIALSTALNVGVRVRYMDRGESSEAIAHDFPEGSPVCVHLLYRP 252

Query: 259 GHYDILY 265
           GHYDILY
Sbjct: 253 GHYDILY 259

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242016414|ref|XP_002428816.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212513513|gb|EEB16078.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  332 bits (852), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 160/247 (64%), Positives = 193/247 (78%), Gaps = 5/247 (2%)

Query: 25  NQDDLILQQSKNIEKEISDSIMLVGDKEDIMVLEQQYIGDEVYKGKVKDLARKYSNLRRT 84
           NQD+LI+QQ + IE+EI DSI +VGD E I+ LE +Y  D++Y  KV+DL+ KY ++RRT
Sbjct: 21  NQDELIMQQQRKIEQEICDSIAIVGDLEPILSLETEYRPDDIYAKKVRDLSNKYKSIRRT 80

Query: 85  RPDGNCFFRSFGFALLESLY-----HLDFRLIAEKSKDKLLELGFQKFTLEDFHDQFMEV 139
           RPDGNCFFR+F +A  E L      +  F  IA K KD L+ LGF KFT+EDFH+ FMEV
Sbjct: 81  RPDGNCFFRAFAYAYFEKLLTDKQEYQRFYDIASKCKDNLVNLGFPKFTVEDFHETFMEV 140

Query: 140 VNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFC 199
           +  I K ET +D L ++FN + +SDYVVVYLRLI SGQLQ++ADFYQ+FIEG RT+ +FC
Sbjct: 141 IENIGKSETTQDDLHKLFNIQGHSDYVVVYLRLITSGQLQKEADFYQHFIEGERTISDFC 200

Query: 200 RQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLLYRPG 259
            QEVEPMFKESDHIHIIALSTAL VGVRVRYMDRG+ +E IAHDFPE   P +HLLYRPG
Sbjct: 201 HQEVEPMFKESDHIHIIALSTALSVGVRVRYMDRGNESEVIAHDFPEGTTPSVHLLYRPG 260

Query: 260 HYDILYP 266
           HYDILYP
Sbjct: 261 HYDILYP 267

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156551583|ref|XP_001602110.1| PREDICTED: ubiquitin thioesterase otubain-like [Nasonia vitripennis]

 Score =  332 bits (851), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 165/257 (64%), Positives = 195/257 (75%), Gaps = 10/257 (3%)

Query: 18  SEDANQVNQDDLILQQSKNIEKEISDSIMLVGDKEDIMVLEQQYIGDEVYKGKVKDLARK 77
           S +   VNQD+LILQQ + IEKEI DS  LVG+KE +  LE +Y  D+VY  K K LA+K
Sbjct: 10  SAENTDVNQDELILQQQRRIEKEIQDSTSLVGEKESLKALESEYTEDDVYLSKAKALAQK 69

Query: 78  YSNLRRTRPDGNCFFRSFGFALLESLY-----HLDFRLIAEKSKDKLLELGFQKFTLEDF 132
           YS  RRTRPDGNCFFR+F +A LE L      +  FR +A KSKD L+ELGF +FT+EDF
Sbjct: 70  YSFFRRTRPDGNCFFRAFSYAYLEKLINNKEEYEKFRDLARKSKDNLVELGFPQFTVEDF 129

Query: 133 HDQFMEVVNLISKPETNEDTLVEV---FNNKDYSDYVVVYLRLIASGQLQQDADFYQNFI 189
           HD FMEV++ +      +D+  E+   FN++ YSDYVVVYLRLI SGQLQ++ADFYQ+FI
Sbjct: 130 HDTFMEVIDRVGG--GTDDSYAELHKLFNDQGYSDYVVVYLRLITSGQLQREADFYQHFI 187

Query: 190 EGNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKP 249
           EG+RTV EFC QEVEPMFKESDHIHIIA+STAL+ GVRVRYMDRG  TE  AHDFPE   
Sbjct: 188 EGDRTVKEFCHQEVEPMFKESDHIHIIAMSTALNTGVRVRYMDRGAGTEVTAHDFPEGST 247

Query: 250 PQIHLLYRPGHYDILYP 266
           P +HLLYRPGHYDILYP
Sbjct: 248 PSVHLLYRPGHYDILYP 264

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025165|gb|EGI65345.1| Ubiquitin thioesterase otubain-like protein [Acromyrmex echinatior]

 Score =  331 bits (849), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 163/250 (65%), Positives = 194/250 (77%), Gaps = 7/250 (2%)

Query: 24  VNQDDLILQQSKNIEKEISDSIMLVGDKEDIMVLEQQYIGDEVYKGKVKDLARKYSNLRR 83
           VNQD+LILQQ + IEKEIS+SI LVG+KE +  LEQ+Y  D+VY  K K LA+KYS +RR
Sbjct: 16  VNQDELILQQQRRIEKEISESIALVGEKEPLKSLEQEYAEDDVYLSKAKALAQKYSYIRR 75

Query: 84  TRPDGNCFFRSFGFALLESLY-----HLDFRLIAEKSKDKLLELGFQKFTLEDFHDQFME 138
           TRPDGNCFFR+F +A LE L      +  FR +A KSKD L+ LGF +FT+EDFHD FME
Sbjct: 76  TRPDGNCFFRAFSYAYLEKLIGNKDEYEKFRDLALKSKDSLVALGFPQFTVEDFHDTFME 135

Query: 139 VVNLISKPETNED--TLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVF 196
           V++ +   +T+     L ++FN + YSDYVVVYLRLI SGQLQ+DADFYQ+FIEG RT+ 
Sbjct: 136 VIDKVGGSDTDSSHMELHKLFNEQGYSDYVVVYLRLITSGQLQRDADFYQHFIEGERTIS 195

Query: 197 EFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLLY 256
           EFC QEVEPM+KESDHIHIIA+S+AL  GVRVRYMDRG  TE  AHDFPE   P +HLLY
Sbjct: 196 EFCHQEVEPMYKESDHIHIIAMSSALGTGVRVRYMDRGAGTEVTAHDFPEGAIPAVHLLY 255

Query: 257 RPGHYDILYP 266
           RPGHYDILYP
Sbjct: 256 RPGHYDILYP 265

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307179540|gb|EFN67854.1| Ubiquitin thioesterase otubain-like [Camponotus floridanus]

 Score =  331 bits (848), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 163/255 (63%), Positives = 197/255 (77%), Gaps = 6/255 (2%)

Query: 18  SEDANQVNQDDLILQQSKNIEKEISDSIMLVGDKEDIMVLEQQYIGDEVYKGKVKDLARK 77
           S +   VNQD+LILQQ + IEKEIS+SI LVG+KE +  LEQ+Y  D++Y  K K LA+K
Sbjct: 10  SMENTDVNQDELILQQQRRIEKEISESIALVGEKESLKSLEQEYAKDDIYLSKAKVLAQK 69

Query: 78  YSNLRRTRPDGNCFFRSFGFALLESLY-----HLDFRLIAEKSKDKLLELGFQKFTLEDF 132
           YS +RRTRPDGNCFFR+F +A LE L      +  FR +A KSKD L+ LGF +FT+EDF
Sbjct: 70  YSYIRRTRPDGNCFFRAFSYAYLEKLIGNKEEYDKFRDLALKSKDNLVALGFPQFTVEDF 129

Query: 133 HDQFMEVVNLISK-PETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEG 191
           HD FMEV++ +    E++   L ++FN + YSDYVVVYLRLI SGQLQ+DADFYQ+FIEG
Sbjct: 130 HDTFMEVIDKVGGDTESSHMELHKLFNEQGYSDYVVVYLRLITSGQLQRDADFYQHFIEG 189

Query: 192 NRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQ 251
           +RT+ EFC QEVEPM+KESDHIHIIA+S+AL  GVRVRYMDRG  TE  AHDFPE   P 
Sbjct: 190 DRTITEFCHQEVEPMYKESDHIHIIAMSSALGTGVRVRYMDRGAGTEVTAHDFPEGAIPS 249

Query: 252 IHLLYRPGHYDILYP 266
           +HLLYRPGHYDILYP
Sbjct: 250 VHLLYRPGHYDILYP 264

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206375|gb|EFN84422.1| Ubiquitin thioesterase otubain-like [Harpegnathos saltator]

 Score =  329 bits (843), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 164/259 (63%), Positives = 196/259 (75%), Gaps = 7/259 (2%)

Query: 15  KGYSEDANQVNQDDLILQQSKNIEKEISDSIMLVGDKEDIMVLEQQYIGDEVYKGKVKDL 74
           K  S +   VNQD+LILQQ + IEKEIS+SI LV +KE +  LEQ+Y  DE+Y  K K L
Sbjct: 7   KELSVENTDVNQDELILQQQRRIEKEISESIALVSEKESLKSLEQEYKEDEIYLSKAKAL 66

Query: 75  ARKYSNLRRTRPDGNCFFRSFGFALLESLY-----HLDFRLIAEKSKDKLLELGFQKFTL 129
           A+KYS +RRTRPDGNCFFR+F +A LE L      +  FR +A KSKD L+ LGF +FT+
Sbjct: 67  AQKYSCIRRTRPDGNCFFRAFSYAYLEKLIENKEEYDKFRDLALKSKDNLVALGFPQFTV 126

Query: 130 EDFHDQFMEVVNLISK--PETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQN 187
           EDFHD FMEV++ +     E++   L ++FN + YSDYVVVYLRLI SGQLQ+DADFYQ+
Sbjct: 127 EDFHDTFMEVIDKVGGDDTESSHMELHKLFNEQGYSDYVVVYLRLITSGQLQRDADFYQH 186

Query: 188 FIEGNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPED 247
           FIEG RT+ EFC QEVEPM+KESDHIHIIA+S+AL  GVRVRYMDRG  TE  AHDFPE 
Sbjct: 187 FIEGERTITEFCHQEVEPMYKESDHIHIIAMSSALGTGVRVRYMDRGAGTEVTAHDFPEG 246

Query: 248 KPPQIHLLYRPGHYDILYP 266
             P +HLLYRPGHYDILYP
Sbjct: 247 AIPAVHLLYRPGHYDILYP 265

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340711926|ref|XP_003394517.1| PREDICTED: LOW QUALITY PROTEIN: ubiquitin thioesterase otubain-like [Bombus terrestris]

 Score =  325 bits (833), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 159/249 (63%), Positives = 193/249 (77%), Gaps = 6/249 (2%)

Query: 24  VNQDDLILQQSKNIEKEISDSIMLVGDKEDIMVLEQQYIGDEVYKGKVKDLARKYSNLRR 83
           +NQD+LILQQ + IE EIS+SI LVG+KE I  LE++Y  DE+Y  K K L +KYS +RR
Sbjct: 16  INQDELILQQQRRIEMEISESIALVGEKESIKSLEREYSEDEIYLSKAKALGQKYSYIRR 75

Query: 84  TRPDGNCFFRSFGFALLESLY-----HLDFRLIAEKSKDKLLELGFQKFTLEDFHDQFME 138
           TRPDGNCFFR+F +A LE L      +  FR +A KSK+ L+ELGF +FT+EDFHD FM+
Sbjct: 76  TRPDGNCFFRAFSYAYLEKLIGNKEEYEKFRELALKSKESLVELGFPQFTVEDFHDTFMD 135

Query: 139 VVNLISK-PETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFE 197
           V++ + +  E++   L ++FN +  SDYVVVYLRLI SGQL+ +ADFYQ+FIEG RTV E
Sbjct: 136 VIDKVGEDTESSYIELHKLFNEQGCSDYVVVYLRLITSGQLRLEADFYQHFIEGERTVSE 195

Query: 198 FCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLLYR 257
           FCRQEVEPM+KESDHIHIIA+STAL  GVRVRYMDRG  TE  AHDFPE   P +HLLYR
Sbjct: 196 FCRQEVEPMYKESDHIHIIAMSTALGTGVRVRYMDRGAGTEVTAHDFPEGATPAVHLLYR 255

Query: 258 PGHYDILYP 266
           PGHYDILYP
Sbjct: 256 PGHYDILYP 264

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350402738|ref|XP_003486586.1| PREDICTED: ubiquitin thioesterase otubain-like [Bombus impatiens]

 Score =  323 bits (828), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 158/249 (63%), Positives = 192/249 (77%), Gaps = 6/249 (2%)

Query: 24  VNQDDLILQQSKNIEKEISDSIMLVGDKEDIMVLEQQYIGDEVYKGKVKDLARKYSNLRR 83
           +NQD+LILQQ + IE EIS+SI LVG+KE I  LE++Y  DE+Y  K K L +KYS +RR
Sbjct: 16  INQDELILQQQRRIEMEISESIALVGEKESIKSLEREYSEDEIYLSKAKALGQKYSYIRR 75

Query: 84  TRPDGNCFFRSFGFALLESLY-----HLDFRLIAEKSKDKLLELGFQKFTLEDFHDQFME 138
           TRPDGNCFFR+F +A LE L      +  FR +A KSK+ L+ LGF +FT+EDFHD FM+
Sbjct: 76  TRPDGNCFFRAFSYAYLEKLIGNKEEYEKFRELALKSKESLVALGFPQFTVEDFHDTFMD 135

Query: 139 VVNLISK-PETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFE 197
           V++ + +  E++   L ++FN +  SDYVVVYLRLI SGQL+ +ADFYQ+FIEG RTV E
Sbjct: 136 VIDKVGEDTESSYIELHKLFNEQGCSDYVVVYLRLITSGQLRLEADFYQHFIEGERTVSE 195

Query: 198 FCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLLYR 257
           FCRQEVEPM+KESDHIHIIA+STAL  GVRVRYMDRG  TE  AHDFPE   P +HLLYR
Sbjct: 196 FCRQEVEPMYKESDHIHIIAMSTALGTGVRVRYMDRGAGTEVTAHDFPEGATPAVHLLYR 255

Query: 258 PGHYDILYP 266
           PGHYDILYP
Sbjct: 256 PGHYDILYP 264

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383849122|ref|XP_003700195.1| PREDICTED: ubiquitin thioesterase otubain-like [Megachile rotundata]

 Score =  321 bits (823), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 159/249 (63%), Positives = 190/249 (76%), Gaps = 6/249 (2%)

Query: 24  VNQDDLILQQSKNIEKEISDSIMLVGDKEDIMVLEQQYIGDEVYKGKVKDLARKYSNLRR 83
           +NQD+LILQQ + IE EIS+SI LVG+KE I  LE++Y  DEVY  K K L +KYS +RR
Sbjct: 16  INQDELILQQQRRIEMEISESIALVGEKEPIKSLEREYPEDEVYLSKAKALGQKYSYIRR 75

Query: 84  TRPDGNCFFRSFGFALLESLY-----HLDFRLIAEKSKDKLLELGFQKFTLEDFHDQFME 138
           TRPDGNCFFR+F +A LE L      +  FR +A KSKD L+ LGF +FT+ DFHD FM+
Sbjct: 76  TRPDGNCFFRAFSYAYLEKLIGNKDEYEKFRELALKSKDNLVALGFPQFTVGDFHDTFMD 135

Query: 139 VVNLISK-PETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFE 197
           V++ +    E++   L ++FN +  SDYVVVYLRLI SGQL+ +ADFYQ+FIEG RTV E
Sbjct: 136 VIDKVGGDAESSYIELHKLFNEQGCSDYVVVYLRLITSGQLRSEADFYQHFIEGERTVSE 195

Query: 198 FCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLLYR 257
           FCRQEVEPM+KESDHIHIIA+STAL  GVRVRYMDRG  TE  AHDFPE   P +HLLYR
Sbjct: 196 FCRQEVEPMYKESDHIHIIAMSTALGTGVRVRYMDRGAGTEVTAHDFPEGATPAVHLLYR 255

Query: 258 PGHYDILYP 266
           PGHYDILYP
Sbjct: 256 PGHYDILYP 264

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357618050|gb|EHJ71145.1| hypothetical protein KGM_09047 [Danaus plexippus]

 Score =  310 bits (794), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 156/257 (60%), Positives = 190/257 (73%), Gaps = 13/257 (5%)

Query: 22  NQVNQDDLILQQSKNIEKEISDSIMLVGDKEDIMVLEQQYIGDEVYKGKVKDLARKYSNL 81
           N VNQD+LI++Q + IEKEIS+SI LVGD E++  LE++Y  D VY  KVKDLA KY ++
Sbjct: 18  NSVNQDELIMKQQREIEKEISESIPLVGDLEELSSLEKEYNEDPVYMLKVKDLASKYKSI 77

Query: 82  RRTRPDGNCFFRSFGFALLESLY-----HLDFRLIAEKSKDKLLELGFQKFTLEDFHDQF 136
           RRTRPDGNCFFR+F +  LE L      +  F  IA+ SK+ L+ LGF +FT+EDF++ F
Sbjct: 78  RRTRPDGNCFFRAFSYGYLEHLLTDKKEYDKFYEIAKNSKEILVALGFPQFTVEDFYETF 137

Query: 137 MEVVNLISKPETN--------EDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNF 188
           MEVV  + +             + L + FN + YSDY+VVYLRLI SGQLQ   DFYQNF
Sbjct: 138 MEVVQRVGEQAGGAPDELGSIREELHDKFNKQGYSDYIVVYLRLITSGQLQTQHDFYQNF 197

Query: 189 IEGNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDK 248
           IEG RTV EFCRQEVEPM+KESDHIHIIALS AL+VGVRV+YMDRG+ ++ IAHDFPE  
Sbjct: 198 IEGPRTVTEFCRQEVEPMYKESDHIHIIALSNALNVGVRVKYMDRGEGSQVIAHDFPEGS 257

Query: 249 PPQIHLLYRPGHYDILY 265
            P +HLLYRPGHYDILY
Sbjct: 258 SPLVHLLYRPGHYDILY 274

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	267
FB|FBgn0032214	262	CG4968 [Drosophila melanogaste	0.917	0.935	0.564	1.5e-74
ZFIN|ZDB-GENE-040718-108	267	otub1a "OTU domain, ubiquitin	0.966	0.966	0.501	4.5e-66
UNIPROTKB|J3KR44	308	OTUB1 "Ubiquitin thioesterase	0.925	0.801	0.5	2.3e-64
UNIPROTKB|Q96FW1	271	OTUB1 "Ubiquitin thioesterase	0.925	0.911	0.5	2.3e-64
UNIPROTKB|C5H0C6	271	OTUB1 "Uncharacterized protein	0.925	0.911	0.5	2.3e-64
MGI|MGI:2147616	271	Otub1 "OTU domain, ubiquitin a	0.925	0.911	0.5	2.3e-64
RGD|1311329	271	Otub1 "OTU domain, ubiquitin a	0.925	0.911	0.5	2.3e-64
ZFIN|ZDB-GENE-040718-204	254	otub1b "OTU domain, ubiquitin	0.921	0.968	0.521	2.9e-64
UNIPROTKB|Q3T0Y1	271	OTUB1 "OTU domain, ubiquitin a	0.925	0.911	0.5	6e-64
UNIPROTKB|F1PIA2	271	OTUB1 "Uncharacterized protein	0.910	0.896	0.5	1.6e-63

FB|FBgn0032214 CG4968 [Drosophila melanogaster (taxid:7227)]

 Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
 Identities = 144/255 (56%), Positives = 190/255 (74%)

Query:    22 NQVNQDDLILQQSKNIEKEISDSIMLVGDKEDIMVLEQQYIGDEVYKGKVKDLARKYSNL 81
             N  N+D+LI+QQ ++IEKEISD+  LV ++  +  L  +Y GDE++  K++DL++KY  +
Sbjct:     7 NDGNRDELIIQQKRDIEKEISDTTPLVSEQLPLTCLYAEYSGDEIFTAKIQDLSKKYKFI 66

Query:    82 RRTRPDGNCFFRSFGFALLESLY-----HLDFRLIAEKSKDKLLELGFQKFTLEDFHDQF 136
             RRTRPDGNCFFR+F ++ LE L      + +F+ +AE+SK+KL++LGF  FTLEDFH+ F
Sbjct:    67 RRTRPDGNCFFRAFAYSYLEYLISNTSAYQEFKKLAEESKEKLVQLGFPSFTLEDFHETF 126

Query:   137 MEVVNLISKPE-----TNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEG 191
             MEV+  +S        T +D L ++FN + YSDYVVVYLRLI SG+LQ++ADFYQNFIEG
Sbjct:   127 MEVIQRVSPDNAGGHSTVQDELHKIFNEQGYSDYVVVYLRLITSGKLQEEADFYQNFIEG 186

Query:   192 NRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQ 251
             + T+  F   EVEPM+KESDHIHIIAL TAL  GVRV Y+DRG+     AHDFPE   P+
Sbjct:   187 DLTIEAFRHLEVEPMYKESDHIHIIALCTALGAGVRVEYLDRGEGGTVKAHDFPEGSEPR 246

Query:   252 IHLLYRPGHYDILYP 266
             I+L+YRPGHYDILYP
Sbjct:   247 IYLIYRPGHYDILYP 261

GO:0005575 "cellular_component" evidence=ND

GO:0008242 "omega peptidase activity" evidence=IEA

GO:0019538 "protein metabolic process" evidence=IEA

ZFIN|ZDB-GENE-040718-108 otub1a "OTU domain, ubiquitin aldehyde binding 1a" [Danio rerio (taxid:7955)]

 Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
 Identities = 133/265 (50%), Positives = 185/265 (69%)

Query:     7 EPDQASFDKGYSEDANQVNQDDLILQQSKNIEKEISDSIMLVGDKEDIMVLEQQYIG-DE 65
             E  Q    +  ++  N +  D+ I+ Q   I++EI+ SI LV +++++ VL+++Y   D 
Sbjct:     3 EEQQQEISQKEADGLNCLAYDEAIIAQQDKIQQEIATSISLVSERQELSVLKREYADEDT 62

Query:    66 VYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFALLESLYHLD-----FRLIAEKSKDKLL 120
             +Y+ K++DL +KYS++R+TRPDGNCF+R+FGF+ LESL         F+ IA KSK  L+
Sbjct:    63 IYQQKIRDLQKKYSSVRKTRPDGNCFYRAFGFSHLESLLEDSKELHRFKAIAAKSKLDLV 122

Query:   121 ELGFQKFTLEDFHDQFMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQ 180
               GF +FT+EDFH+ FM+++    K +T+   L+  FN +  SDY+VVYLRL+ SG LQ+
Sbjct:   123 SQGFTEFTIEDFHNTFMDLIEACDK-QTSVGELLTSFNEQSVSDYLVVYLRLVTSGYLQR 181

Query:   181 DADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAI 240
             + DF+Q+FIEG RTV EFC+QEVEPM KESDHIHIIAL+ AL V ++V YMDRG+     
Sbjct:   182 EEDFFQHFIEGGRTVREFCQQEVEPMSKESDHIHIIALAQALGVCIQVEYMDRGEGGTVN 241

Query:   241 AHDFPEDKPPQIHLLYRPGHYDILY 265
              H FPE   P+I LLYRPGHYDILY
Sbjct:   242 HHIFPEGGEPKIFLLYRPGHYDILY 266

GO:0019538 "protein metabolic process" evidence=IEA

GO:0008242 "omega peptidase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|J3KR44 OTUB1 "Ubiquitin thioesterase OTUB1" [Homo sapiens (taxid:9606)]

 Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
 Identities = 127/254 (50%), Positives = 183/254 (72%)

Query:    18 SEDANQVNQDDLILQQSKNIEKEISDSIMLVGDKEDIMVLEQQYIGDE-VYKGKVKDLAR 76
             SE  N +  D+ I+ Q   I++EI+    LV ++ ++ VL ++Y  D+ +Y+ K+KDL +
Sbjct:    55 SEGVNCLAYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHK 114

Query:    77 KYSNLRRTRPDGNCFFRSFGFALLESLY----HLD-FRLIAEKSKDKLLELGFQKFTLED 131
             KYS +R+TRPDGNCF+R+FGF+ LE+L      L  F+ ++ KSK+ L+  GF +FT+ED
Sbjct:   115 KYSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIED 174

Query:   132 FHDQFMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEG 191
             FH+ FM+++  + K +T+   L+  FN++  SDY+VVYLRL+ SG LQ+++ F+++FIEG
Sbjct:   175 FHNTFMDLIEQVEK-QTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEG 233

Query:   192 NRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQ 251
              RTV EFC+QEVEPM KESDHIHIIAL+ AL V ++V YMDRG+      H FPE   P+
Sbjct:   234 GRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPK 293

Query:   252 IHLLYRPGHYDILY 265
             ++LLYRPGHYDILY
Sbjct:   294 VYLLYRPGHYDILY 307

GO:0008242 "omega peptidase activity" evidence=IEA

GO:0019538 "protein metabolic process" evidence=IEA

UNIPROTKB|Q96FW1 OTUB1 "Ubiquitin thioesterase OTUB1" [Homo sapiens (taxid:9606)]

 Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
 Identities = 127/254 (50%), Positives = 183/254 (72%)

Query:    18 SEDANQVNQDDLILQQSKNIEKEISDSIMLVGDKEDIMVLEQQYIGDE-VYKGKVKDLAR 76
             SE  N +  D+ I+ Q   I++EI+    LV ++ ++ VL ++Y  D+ +Y+ K+KDL +
Sbjct:    18 SEGVNCLAYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHK 77

Query:    77 KYSNLRRTRPDGNCFFRSFGFALLESLY----HLD-FRLIAEKSKDKLLELGFQKFTLED 131
             KYS +R+TRPDGNCF+R+FGF+ LE+L      L  F+ ++ KSK+ L+  GF +FT+ED
Sbjct:    78 KYSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIED 137

Query:   132 FHDQFMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEG 191
             FH+ FM+++  + K +T+   L+  FN++  SDY+VVYLRL+ SG LQ+++ F+++FIEG
Sbjct:   138 FHNTFMDLIEQVEK-QTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEG 196

Query:   192 NRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQ 251
              RTV EFC+QEVEPM KESDHIHIIAL+ AL V ++V YMDRG+      H FPE   P+
Sbjct:   197 GRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPK 256

Query:   252 IHLLYRPGHYDILY 265
             ++LLYRPGHYDILY
Sbjct:   257 VYLLYRPGHYDILY 270

GO:0008242 "omega peptidase activity" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0019784 "NEDD8-specific protease activity" evidence=IDA

GO:0071108 "protein K48-linked deubiquitination" evidence=IDA

GO:0004843 "ubiquitin-specific protease activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043130 "ubiquitin binding" evidence=IDA

GO:2000780 "negative regulation of double-strand break repair" evidence=IMP

GO:0006974 "response to DNA damage stimulus" evidence=IDA

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:1901315 "negative regulation of histone H2A K63-linked ubiquitination" evidence=IDA

UNIPROTKB|C5H0C6 OTUB1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
 Identities = 127/254 (50%), Positives = 183/254 (72%)

Query:    18 SEDANQVNQDDLILQQSKNIEKEISDSIMLVGDKEDIMVLEQQYIGDE-VYKGKVKDLAR 76
             SE  N +  D+ I+ Q   I++EI+    LV ++ ++ VL ++Y  D+ +Y+ K+KDL +
Sbjct:    18 SEGVNCLAYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHK 77

Query:    77 KYSNLRRTRPDGNCFFRSFGFALLESLY----HLD-FRLIAEKSKDKLLELGFQKFTLED 131
             KYS +R+TRPDGNCF+R+FGF+ LE+L      L  F+ ++ KSK+ L+  GF +FT+ED
Sbjct:    78 KYSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIED 137

Query:   132 FHDQFMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEG 191
             FH+ FM+++  + K +T+   L+  FN++  SDY+VVYLRL+ SG LQ+++ F+++FIEG
Sbjct:   138 FHNTFMDLIEQVEK-QTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEG 196

Query:   192 NRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQ 251
              RTV EFC+QEVEPM KESDHIHIIAL+ AL V ++V YMDRG+      H FPE   P+
Sbjct:   197 GRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPK 256

Query:   252 IHLLYRPGHYDILY 265
             ++LLYRPGHYDILY
Sbjct:   257 VYLLYRPGHYDILY 270

GO:2000780 "negative regulation of double-strand break repair" evidence=IEA

GO:1901315 "negative regulation of histone H2A K63-linked ubiquitination" evidence=IEA

GO:0071108 "protein K48-linked deubiquitination" evidence=IEA

GO:0043130 "ubiquitin binding" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0019784 "NEDD8-specific protease activity" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

GO:0008242 "omega peptidase activity" evidence=IEA

MGI|MGI:2147616 Otub1 "OTU domain, ubiquitin aldehyde binding 1" [Mus musculus (taxid:10090)]

 Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
 Identities = 127/254 (50%), Positives = 183/254 (72%)

Query:    18 SEDANQVNQDDLILQQSKNIEKEISDSIMLVGDKEDIMVLEQQYIGDE-VYKGKVKDLAR 76
             SE  N +  D+ I+ Q   I++EI+    LV ++ ++ VL ++Y  D+ +Y+ K+KDL +
Sbjct:    18 SEGVNCLAYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHK 77

Query:    77 KYSNLRRTRPDGNCFFRSFGFALLESLY----HLD-FRLIAEKSKDKLLELGFQKFTLED 131
             KYS +R+TRPDGNCF+R+FGF+ LE+L      L  F+ ++ KSK+ L+  GF +FT+ED
Sbjct:    78 KYSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIED 137

Query:   132 FHDQFMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEG 191
             FH+ FM+++  + K +T+   L+  FN++  SDY+VVYLRL+ SG LQ+++ F+++FIEG
Sbjct:   138 FHNTFMDLIEQVEK-QTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEG 196

Query:   192 NRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQ 251
              RTV EFC+QEVEPM KESDHIHIIAL+ AL V ++V YMDRG+      H FPE   P+
Sbjct:   197 GRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHVFPEGSEPK 256

Query:   252 IHLLYRPGHYDILY 265
             ++LLYRPGHYDILY
Sbjct:   257 VYLLYRPGHYDILY 270

GO:0004843 "ubiquitin-specific protease activity" evidence=ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=ISO

GO:0008233 "peptidase activity" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0008242 "omega peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0019538 "protein metabolic process" evidence=IEA

GO:0019784 "NEDD8-specific protease activity" evidence=ISO

GO:0031625 "ubiquitin protein ligase binding" evidence=ISO

GO:0043130 "ubiquitin binding" evidence=ISO

GO:0071108 "protein K48-linked deubiquitination" evidence=ISO

GO:1901315 "negative regulation of histone H2A K63-linked ubiquitination" evidence=ISO

GO:2000780 "negative regulation of double-strand break repair" evidence=ISO

RGD|1311329 Otub1 "OTU domain, ubiquitin aldehyde binding 1" [Rattus norvegicus (taxid:10116)]

 Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
 Identities = 127/254 (50%), Positives = 183/254 (72%)

Query:    18 SEDANQVNQDDLILQQSKNIEKEISDSIMLVGDKEDIMVLEQQYIGDE-VYKGKVKDLAR 76
             SE  N +  D+ I+ Q   I++EI+    LV ++ ++ VL ++Y  D+ +Y+ K+KDL +
Sbjct:    18 SEGVNCLAYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHK 77

Query:    77 KYSNLRRTRPDGNCFFRSFGFALLESLY----HLD-FRLIAEKSKDKLLELGFQKFTLED 131
             KYS +R+TRPDGNCF+R+FGF+ LE+L      L  F+ ++ KSK+ L+  GF +FT+ED
Sbjct:    78 KYSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIED 137

Query:   132 FHDQFMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEG 191
             FH+ FM+++  + K +T+   L+  FN++  SDY+VVYLRL+ SG LQ+++ F+++FIEG
Sbjct:   138 FHNTFMDLIEQVEK-QTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEG 196

Query:   192 NRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQ 251
              RTV EFC+QEVEPM KESDHIHIIAL+ AL V ++V YMDRG+      H FPE   P+
Sbjct:   197 GRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHVFPEGSEPK 256

Query:   252 IHLLYRPGHYDILY 265
             ++LLYRPGHYDILY
Sbjct:   257 VYLLYRPGHYDILY 270

GO:0004843 "ubiquitin-specific protease activity" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=ISO;ISS

GO:0008242 "omega peptidase activity" evidence=IEA

GO:0019784 "NEDD8-specific protease activity" evidence=ISO;ISS

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA;ISO

GO:0043130 "ubiquitin binding" evidence=ISO;ISS

GO:0071108 "protein K48-linked deubiquitination" evidence=ISO;ISS

GO:1901315 "negative regulation of histone H2A K63-linked ubiquitination" evidence=ISO;ISS

GO:2000780 "negative regulation of double-strand break repair" evidence=ISO;ISS

ZFIN|ZDB-GENE-040718-204 otub1b "OTU domain, ubiquitin aldehyde binding 1b" [Danio rerio (taxid:7955)]

 Score = 655 (235.6 bits), Expect = 2.9e-64, P = 2.9e-64
 Identities = 132/253 (52%), Positives = 181/253 (71%)

Query:    19 EDANQVNQDDLILQQSKNIEKEISDSIMLVGDKEDIMVLEQQY-IGDEVYKGKVKDLARK 77
             E  N +  D+ I+ Q   I++EI+ S  LV D++++ VL+ +Y + D +Y+ K++DL +K
Sbjct:     2 EGVNCLAYDEAIMAQQDRIQQEIATSNPLVSDRQELSVLKGEYAMEDTIYQLKIQDLHKK 61

Query:    78 YSNLRRTRPDGNCFFRSFGFALLESLYH----LD-FRLIAEKSKDKLLELGFQKFTLEDF 132
             YS++R+TRPDGNCF+R+FGFA LESL      L  F+ +A KSK  L+  GF +FT+EDF
Sbjct:    62 YSSIRKTRPDGNCFYRAFGFAHLESLLEDSKELQRFKAVAAKSKLDLVNQGFTEFTIEDF 121

Query:   133 HDQFMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGN 192
             H+ FM+++ L  K ++  + L   FN++  SDY+VVYLRL+ SG LQ++  F+Q+FIEG 
Sbjct:   122 HNTFMDLIELCEKQQSLGEVLSS-FNDQSVSDYIVVYLRLLTSGYLQREHVFFQHFIEGG 180

Query:   193 RTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQI 252
             R+V EFC+QEVEPM KESDHIHIIAL+ AL+V V V YMDRG+      H FPE   P+I
Sbjct:   181 RSVKEFCQQEVEPMSKESDHIHIIALAQALNVPVLVEYMDRGEGGTVNNHVFPEGSEPRI 240

Query:   253 HLLYRPGHYDILY 265
              LLYRPGHYDILY
Sbjct:   241 FLLYRPGHYDILY 253

GO:0019538 "protein metabolic process" evidence=IEA

GO:0008242 "omega peptidase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q3T0Y1 OTUB1 "OTU domain, ubiquitin aldehyde binding 1" [Bos taurus (taxid:9913)]

 Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
 Identities = 127/254 (50%), Positives = 180/254 (70%)

Query:    18 SEDANQVNQDDLILQQSKNIEKEISDSIMLVGDKEDIMVLEQQYIGDE-VYKGKVKDLAR 76
             SE  N +  D+ I+ Q   I++EI+    LV ++ ++ VL ++Y  D+ +Y+ K+KDL +
Sbjct:    18 SEGVNCLAYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHK 77

Query:    77 KYSNLRRTRPDGNCFFRSFGFALLESLY----HLD-FRLIAEKSKDKLLELGFQKFTLED 131
             KYS +R+TRPDGNCF+R+FGF+ LE+L      L  F+ ++ KSK+ L+  GF +FT+ED
Sbjct:    78 KYSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIED 137

Query:   132 FHDQFMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEG 191
             FH+ FM+++  + K     D L   FN++  SDY+VVYLRL+ SG LQ+++ F+++FIEG
Sbjct:   138 FHNTFMDLIEQVEKRTPVADLLAS-FNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEG 196

Query:   192 NRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQ 251
              RTV EFC+QEVEPM KESDHIHIIAL+ AL V ++V YMDRG+      H FPE   P+
Sbjct:   197 GRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHVFPEGSEPK 256

Query:   252 IHLLYRPGHYDILY 265
             ++LLYRPGHYDILY
Sbjct:   257 VYLLYRPGHYDILY 270

GO:2000780 "negative regulation of double-strand break repair" evidence=IEA

GO:1901315 "negative regulation of histone H2A K63-linked ubiquitination" evidence=IEA

GO:0071108 "protein K48-linked deubiquitination" evidence=IEA

GO:0043130 "ubiquitin binding" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0019784 "NEDD8-specific protease activity" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

GO:0008242 "omega peptidase activity" evidence=IEA

UNIPROTKB|F1PIA2 OTUB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
 Identities = 125/250 (50%), Positives = 181/250 (72%)

Query:    22 NQVNQDDLILQQSKNIEKEISDSIMLVGDKEDIMVLEQQYIGDE-VYKGKVKDLARKYSN 80
             N +  D+ I+ Q   I++EI+    LV ++ ++ VL ++Y  D+ +Y+ K+KDL +KYS 
Sbjct:    22 NCLAYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSY 81

Query:    81 LRRTRPDGNCFFRSFGFALLESLY----HLD-FRLIAEKSKDKLLELGFQKFTLEDFHDQ 135
             +R+TRPDGNCF+R+FGF+ LE+L      L  F+ ++ KSK+ L+  GF +FT+EDFH+ 
Sbjct:    82 IRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNT 141

Query:   136 FMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTV 195
             FM+++  + K +T+   L+  FN++  SDY+VVYLRL+ SG LQ+++ F+++FIEG RTV
Sbjct:   142 FMDLIEQVEK-QTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTV 200

Query:   196 FEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLL 255
              EFC+QEVEPM KESDHIHIIAL+ AL V ++V YMDRG+      H FPE   P+++LL
Sbjct:   201 KEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLL 260

Query:   256 YRPGHYDILY 265
             YRPGHYDILY
Sbjct:   261 YRPGHYDILY 270

GO:0019538 "protein metabolic process" evidence=IEA

GO:0008242 "omega peptidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B2RYG6	OTUB1_RAT	3, ., 4, ., 1, 9, ., 1, 2	0.5	0.9176	0.9040	yes	N/A
Q96FW1	OTUB1_HUMAN	3, ., 4, ., 1, 9, ., 1, 2	0.5	0.9176	0.9040	yes	N/A
Q9VL00	OTUBL_DROME	3, ., 4, ., 1, 9, ., 1, 2	0.5647	0.9176	0.9351	yes	N/A
Q7TQI3	OTUB1_MOUSE	3, ., 4, ., 1, 9, ., 1, 2	0.5	0.9176	0.9040	yes	N/A
Q8LG98	OTUBL_ARATH	3, ., 4, ., 1, 9, ., 1, 2	0.3916	0.8838	0.7712	yes	N/A
Q9XVR6	OTUBL_CAEEL	3, ., 4, ., 1, 9, ., 1, 2	0.3602	0.9588	0.9014	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.19	0.963
3rd Layer	3.4.19.12	0.946

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	267
pfam10275	237	pfam10275, Peptidase_C65, Peptidase C65 Otubain	6e-87

>gnl|CDD|220671 pfam10275, Peptidase_C65, Peptidase C65 Otubain

 Score =  258 bits (661), Expect = 6e-87
 Identities = 113/237 (47%), Positives = 158/237 (66%), Gaps = 10/237 (4%)

Query: 40  EISDSIMLVGDKEDIMVLEQQY-IGDEVYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFA 98
           E  +   LVG+KE +  L ++Y + D +Y  K+KDL++KYS +RR R DGNCF+R+FGF+
Sbjct: 1   EEENQGPLVGEKEPLSALTKEYALADPIYLKKIKDLSKKYSGIRRVRGDGNCFYRAFGFS 60

Query: 99  LLESL-------YHLDFRLIAEKSKDKLLELGFQKFTLEDFHDQFMEVVNLI-SKPETNE 150
            LE L           F    E  K+KL+ LGF +FT EDF D+F+E++  +     T+ 
Sbjct: 61  YLEILLRKKDPAEINRFIARIESLKEKLVALGFDEFTFEDFLDEFIELLEKLEDGGSTSR 120

Query: 151 DTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKES 210
           + L++ FN+ +YSDY+V++ RL+ S  ++++AD YQ FI+   TV EFC QEVEPM KES
Sbjct: 121 EELLKAFNDPEYSDYIVIFFRLLTSAYIKENADEYQPFIDELLTVEEFCEQEVEPMAKES 180

Query: 211 DHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPED-KPPQIHLLYRPGHYDILYP 266
           DH+ IIAL+ AL + VRV Y+DR +  E   H+FP +   P+I LLYRPGHYDILYP
Sbjct: 181 DHVQIIALAEALGIPVRVEYLDRSEGNEYNHHNFPPEPNAPKITLLYRPGHYDILYP 237

This family of proteins conserved from plants to humans is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryote being a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. Length = 237

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	267
KOG3991|consensus	256		100.0
PF10275	244	Peptidase_C65: Peptidase C65 Otubain; InterPro: IP	100.0
KOG2606|consensus	302		99.75
PF02338	121	OTU: OTU-like cysteine protease; InterPro: IPR0033	99.49
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	98.75
KOG3288|consensus	307		98.31
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	97.11
KOG2605|consensus	371		94.15

>KOG3991|consensus

Probab=100.00  E-value=3.1e-79  Score=532.66  Aligned_cols=244  Identities=49%  Similarity=0.883  Sum_probs=238.0

Q ss_pred             CCCchHHHHHHHHHHHHHhhccCCCcccccchHHHHHhccCChHHHHHHHHHHHhcccceeccCCCcchhHHHHHHHHHH
Q psy12903         23 QVNQDDLILQQSKNIEKEISDSIMLVGDKEDIMVLEQQYIGDEVYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFALLES  102 (267)
Q Consensus        23 ~~~~de~~~~q~~~i~~e~~~~~plV~~~~~l~~L~~eY~~~~~~~~Ki~~L~~~y~~~R~vRGDGNCFYRAf~F~ylE~  102 (267)
                      +...||.|++|+.+|++|++++.||||++.|++.|.+||.++++|.+||+.|.++|..||++|||||||||||+|+|+|.
T Consensus         8 ~~v~de~~~~~q~~~~~e~~~~~plvse~~~~s~l~~eY~~d~iy~~KIq~Lsk~Y~~iR~trgDGNCfyra~~~s~lE~   87 (256)
T KOG3991|consen    8 EAVDDEIILQDQLKIQEEESKTNPLVSEKAPLSSLYAEYFGDPIYTTKIQELSKKYTVIRKTRGDGNCFYRAFAYSYLEL   87 (256)
T ss_pred             ccccchhhhhchHHHHHHHhhcCccccccccHHHHHHHhcCChHHHHHHHHHHHHhhhhheecCCCceehHHHHHHHHHH
Confidence            44579999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHh-----hHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhCCCCCCHHHHHHHhcccCcchHHHHHHHHHHHHH
Q psy12903        103 LYH-----LDFRLIAEKSKDKLLELGFQKFTLEDFHDQFMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQ  177 (267)
Q Consensus       103 ll~-----~~~~~~v~~~~~~L~~~g~~~~~~edF~~~f~~li~~i~~~~~~~~~L~~~fnd~~~s~yiV~~LR~lts~~  177 (267)
                      |+.     .+|+..+.++++.|..+||++|+++||++.|+++|++|. ++.+.++|++.|||+..|+|||+|||++||++
T Consensus        88 ll~d~~~l~~fka~~~kt~~~L~~~gf~e~t~~dFh~~Fievle~v~-~g~sv~~l~~~~ndq~ssdyiV~ylRLvtS~~  166 (256)
T KOG3991|consen   88 LLLDRAELQKFKAAVEKTKETLVLLGFPEFTFEDFHDTFIEVLEDVE-GGTSVDELLKIFNDQSSSDYIVMYLRLVTSGF  166 (256)
T ss_pred             HHhchHHHHHHHHHHHhhhHHHHHcCCCccchhhHHHHHHHHHHHHc-CCccHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence            999     789999999999999999999999999999999999998 66899999999999999999999999999999


Q ss_pred             HhcCHhhhhccccCCCCHHHHHhhhcccccccchHHHHHHHHHhcCCcEEEEEccCCCCCccceecCCCCCCCeEEEEec
Q psy12903        178 LQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLLYR  257 (267)
Q Consensus       178 i~~n~d~f~pFi~~~~~~~~yC~~~Ve~~~~e~d~i~I~ALs~aL~v~I~V~~ld~~~~~~v~~~~f~e~~~p~I~LLYr  257 (267)
                      ||+|+|+|+|||++++|+.+||.++|+||++++|||+|.|||+||++.|+|+|+|++.+..+++|+||+++.|.|+||||
T Consensus       167 ik~~adfy~pFI~e~~tV~~fC~~eVEPm~kesdhi~I~ALs~Al~i~irVey~dr~~~~~~~hH~fpe~s~P~I~LLYr  246 (256)
T KOG3991|consen  167 IKSNADFYQPFIDEGMTVKAFCTQEVEPMYKESDHIHITALSQALGIRIRVEYVDRGSGDTVNHHDFPEASAPEIYLLYR  246 (256)
T ss_pred             HhhChhhhhccCCCCCcHHHHHHhhcchhhhccCceeHHHHHhhhCceEEEEEecCCCCCCCCCCcCccccCceEEEEec
Confidence            99999999999999999999999999999999999999999999999999999999998899999999999999999999


Q ss_pred             CCCccccccC
Q psy12903        258 PGHYDILYPL  267 (267)
Q Consensus       258 pGHYDILY~~  267 (267)
                      ||||||||||
T Consensus       247 pGHYdilY~~  256 (256)
T KOG3991|consen  247 PGHYDILYKK  256 (256)
T ss_pred             CCccccccCC
Confidence            9999999997

>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=100.00  E-value=7.4e-70  Score=488.59  Aligned_cols=227  Identities=48%  Similarity=0.856  Sum_probs=198.7

Q ss_pred             HhhccCCCcccccchHHHHHhccC-ChHHHHHHHHHHHhcccceeccCCCcchhHHHHHHHHHHHHh-------hHHHHH
Q psy12903         40 EISDSIMLVGDKEDIMVLEQQYIG-DEVYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFALLESLYH-------LDFRLI  111 (267)
Q Consensus        40 e~~~~~plV~~~~~l~~L~~eY~~-~~~~~~Ki~~L~~~y~~~R~vRGDGNCFYRAf~F~ylE~ll~-------~~~~~~  111 (267)
                      |++++.||||+++|++.|.+||++ +++|++|++.|.++|+++||||||||||||||+|+|||+|+.       ++|++.
T Consensus         1 ~~~~~~plv~~~~~~~~L~~ey~~~~~~~~~ki~~L~~~y~~~R~vRGDGNCFYRAf~F~ylE~ll~~~~~~~~~~~~~~   80 (244)
T PF10275_consen    1 EEEAQYPLVGEKEPLSALVKEYSDNDPIFQKKIKKLSQKYSGIRRVRGDGNCFYRAFGFSYLEQLLESPDDQEFERFLAR   80 (244)
T ss_dssp             -HHCCS-SB---EETCHHHHCTTTTCHHHHHHHHHHHHHEEEEE-B-SSSTHHHHHHHHHHHHHHTT-HH--HHHHHHHH
T ss_pred             CccccCCCCCCcccHHHHHHHHhccCHHHHHHHHHHHhhhhheEeecCCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            456889999999999999999995 999999999999999999999999999999999999999998       578888


Q ss_pred             HHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhCCCCCCHH---HHHHHhcccCcchHHHHHHHHHHHHHHhcCHhhhhcc
Q psy12903        112 AEKSKDKLLELGFQKFTLEDFHDQFMEVVNLISKPETNED---TLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNF  188 (267)
Q Consensus       112 v~~~~~~L~~~g~~~~~~edF~~~f~~li~~i~~~~~~~~---~L~~~fnd~~~s~yiV~~LR~lts~~i~~n~d~f~pF  188 (267)
                      +++++..|...||++++++||+++|+++|++|+++..+..   .|++.||+++.|+|+|+|||++||+||+.|+++|+||
T Consensus        81 i~~~~~~l~~~~~~~~~~~~f~~~f~~~l~~i~~~~~~~~~~~~l~~~f~~~~~s~~iV~flRLlts~~l~~~~d~y~~f  160 (244)
T PF10275_consen   81 IKSLKFKLEAFGYDEEIFEDFYDEFLELLEKIANGESNSQRQEELLEAFNDEEISDYIVIFLRLLTSAYLKSNSDEYEPF  160 (244)
T ss_dssp             HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHCTSSHHH---HHHHHHTSHHHHHHHHHHHHHHHHHHHHHTHHHHGGG
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHhCcCcccHHHHHHHHHHHHHHHhhHHHHhhh
Confidence            9999999999999999999999999999999985544333   9999999999999999999999999999999999999


Q ss_pred             ccCC--CCHHHHHhhhcccccccchHHHHHHHHHhcCCcEEEEEccCC-CCCccceecCC---CCCCCeEEEEecCCCcc
Q psy12903        189 IEGN--RTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRG-DSTEAIAHDFP---EDKPPQIHLLYRPGHYD  262 (267)
Q Consensus       189 i~~~--~~~~~yC~~~Ve~~~~e~d~i~I~ALs~aL~v~I~V~~ld~~-~~~~v~~~~f~---e~~~p~I~LLYrpGHYD  262 (267)
                      +++.  +++++||+++|+||++|+||++|+|||+||+++|+|+|+|++ .+..++.|.||   +++.|.|+|||||||||
T Consensus       161 i~~~~~~tve~~C~~~Vep~~~Ead~v~i~ALa~aL~v~i~v~yld~~~~~~~~~~~~~~~~~~~~~~~i~LLyrpgHYd  240 (244)
T PF10275_consen  161 IDGLEYLTVEEFCSQEVEPMGKEADHVQIIALAQALGVPIRVEYLDRSVEGDEVNRHEFPPDNESQEPQITLLYRPGHYD  240 (244)
T ss_dssp             SSTT--S-HHHHHHHHTSSTT--B-HHHHHHHHHHHT--EEEEESSSSGCSTTSEEEEES-SSTTSS-SEEEEEETBEEE
T ss_pred             hcccccCCHHHHHHhhcccccccchhHHHHHHHHHhCCeEEEEEecCCCCCCccccccCCCccCCCCCEEEEEEcCCccc
Confidence            9986  899999999999999999999999999999999999999998 78899999997   45789999999999999


Q ss_pred             cccc
Q psy12903        263 ILYP  266 (267)
Q Consensus       263 ILY~  266 (267)
                      ||||
T Consensus       241 Ily~  244 (244)
T PF10275_consen  241 ILYP  244 (244)
T ss_dssp             EEEE
T ss_pred             cccC
Confidence            9997

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.

>KOG2606|consensus

Probab=99.75  E-value=8.1e-18  Score=152.70  Aligned_cols=136  Identities=21%  Similarity=0.331  Sum_probs=104.0

Q ss_pred             HHHHHH-HHHHHhcccceeccCCCcchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhC
Q psy12903         66 VYKGKV-KDLARKYSNLRRTRPDGNCFFRSFGFALLESLYHLDFRLIAEKSKDKLLELGFQKFTLEDFHDQFMEVVNLIS  144 (267)
Q Consensus        66 ~~~~Ki-~~L~~~y~~~R~vRGDGNCFYRAf~F~ylE~ll~~~~~~~v~~~~~~L~~~g~~~~~~edF~~~f~~li~~i~  144 (267)
                      +=.+|+ +.|...-...--|..||+|.|+|+.                    ++|.--+-...                 
T Consensus       145 ~E~~k~~~il~~~~l~~~~Ip~DG~ClY~aI~--------------------hQL~~~~~~~~-----------------  187 (302)
T KOG2606|consen  145 MEKEKLAQILEERGLKMFDIPADGHCLYAAIS--------------------HQLKLRSGKLL-----------------  187 (302)
T ss_pred             hHHHHHHHHHHhccCccccCCCCchhhHHHHH--------------------HHHHhccCCCC-----------------
Confidence            444566 5666777888899999999999999                    66644332222                 


Q ss_pred             CCCCCHHHHHHHhcccCcchHHHHHHHHHHHHHHhcCHhhhhccccCC--------CCHHHHHhhhcccccccchHHHHH
Q psy12903        145 KPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGN--------RTVFEFCRQEVEPMFKESDHIHII  216 (267)
Q Consensus       145 ~~~~~~~~L~~~fnd~~~s~yiV~~LR~lts~~i~~n~d~f~pFi~~~--------~~~~~yC~~~Ve~~~~e~d~i~I~  216 (267)
                                           .|.-||..++.||++|.++|.||+.++        .++++||.+ |+-+++|||+++|.
T Consensus       188 ---------------------~v~kLR~~~a~Ymr~H~~df~pf~~~eet~d~~~~~~f~~Yc~e-I~~t~~WGgelEL~  245 (302)
T KOG2606|consen  188 ---------------------SVQKLREETADYMREHVEDFLPFLLDEETGDSLGPEDFDKYCRE-IRNTAAWGGELELK  245 (302)
T ss_pred             ---------------------cHHHHHHHHHHHHHHHHHHhhhHhcCccccccCCHHHHHHHHHH-hhhhccccchHHHH
Confidence                                 346899999999999999999999652        249999985 77789999999999


Q ss_pred             HHHHhcCCcEEEEEccCCCCCccceecCC-CCCC-CeEEEEe-cC----C-Ccccccc
Q psy12903        217 ALSTALDVGVRVRYMDRGDSTEAIAHDFP-EDKP-PQIHLLY-RP----G-HYDILYP  266 (267)
Q Consensus       217 ALs~aL~v~I~V~~ld~~~~~~v~~~~f~-e~~~-p~I~LLY-rp----G-HYDILY~  266 (267)
                      |||.+|++||+|++.|++.      +.|. +.+. +.|.|+| |+    | ||+.+-|
T Consensus       246 AlShvL~~PI~Vy~~~~p~------~~~geey~kd~pL~lvY~rH~y~LGeHYNS~~~  297 (302)
T KOG2606|consen  246 ALSHVLQVPIEVYQADGPI------LEYGEEYGKDKPLILVYHRHAYGLGEHYNSVTP  297 (302)
T ss_pred             HHHHhhccCeEEeecCCCc------eeechhhCCCCCeeeehHHhHHHHHhhhccccc
Confidence            9999999999999888763      2333 3233 5688888 54    2 8887643

>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae

Probab=99.49  E-value=4.9e-14  Score=112.69  Aligned_cols=83  Identities=25%  Similarity=0.392  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHh-cCHhhhhccccCCCCHHHHHhhhcccccccchHHHHHHHHHhcCCcEEEEEccCCCCCccceec---
Q psy12903        168 VYLRLIASGQLQ-QDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHD---  243 (267)
Q Consensus       168 ~~LR~lts~~i~-~n~d~f~pFi~~~~~~~~yC~~~Ve~~~~e~d~i~I~ALs~aL~v~I~V~~ld~~~~~~v~~~~---  243 (267)
                      ..||..+..||+ .|++.|.+|+.+.         .+...++||++++|.|+|..|+++|.|+.....  .......   
T Consensus        27 ~~lR~~~~~~l~~~~~~~~~~~~~~~---------~~~~~~~Wg~~~el~a~a~~~~~~I~v~~~~~~--~~~~~~~~~~   95 (121)
T PF02338_consen   27 QELRKAVVDYLRDKNRDKFEEFLEGD---------KMSKPGTWGGEIELQALANVLNRPIIVYSSSDG--DNVVFIKFTG   95 (121)
T ss_dssp             HHHHHHHHHHHHTHTTTHHHHHHHHH---------HHTSTTSHEEHHHHHHHHHHHTSEEEEECETTT--BEEEEEEESC
T ss_pred             HHHHHHHHHHHHHhccchhhhhhhhh---------hhccccccCcHHHHHHHHHHhCCeEEEEEcCCC--CccceeeecC
Confidence            578999999999 9999999999752         477899999999999999999999999655322  2111111   


Q ss_pred             --CCCCCCCeEEEEec------CCCc
Q psy12903        244 --FPEDKPPQIHLLYR------PGHY  261 (267)
Q Consensus       244 --f~e~~~p~I~LLYr------pGHY  261 (267)
                        -+....+.++|+|.      .+||
T Consensus        96 ~~~~~~~~~~i~l~~~~~l~~~~~Hy  121 (121)
T PF02338_consen   96 KYPPLESPPPICLCYHGHLYYTGNHY  121 (121)
T ss_dssp             EESTTTTTTSEEEEEETEEEEETTEE
T ss_pred             ccccCCCCCeEEEEEcCCccCCCCCC
Confidence              12345677888886      5798

In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=98.75  E-value=3e-09  Score=96.96  Aligned_cols=203  Identities=16%  Similarity=0.202  Sum_probs=124.5

Q ss_pred             HHHHHhccCChHHHHHHHHHHHhcccceeccC-CCcchhHHHHHHHHHHHHhhHHHHHHHHHHH------HHHHcCCCcc
Q psy12903         55 MVLEQQYIGDEVYKGKVKDLARKYSNLRRTRP-DGNCFFRSFGFALLESLYHLDFRLIAEKSKD------KLLELGFQKF  127 (267)
Q Consensus        55 ~~L~~eY~~~~~~~~Ki~~L~~~y~~~R~vRG-DGNCFYRAf~F~ylE~ll~~~~~~~v~~~~~------~L~~~g~~~~  127 (267)
                      +.+.+.|.+++.++.||.-+.+++...|+-.+ +|+|-+-+.+-+-...+...+....-..+.+      ......+++-
T Consensus        16 ~lt~kq~~e~~dlq~kI~~~~kql~~g~~~qrl~~k~~~ls~~ls~~~e~~i~k~~~~~~et~ea~q~~~l~~~q~~~~~   95 (306)
T COG5539          16 SLTEKQRFELKDLQTKITRIMKQLTFGRPPQRLNGKCLDLSYALSQKDEVEIEKAPKLRAETNEADQEDSLTPLQNIPEL   95 (306)
T ss_pred             HHHhhhhcccHHHHHHHHHHHHHHHccCchhhhccccchHHHHhhhhHHHHhhhhhhhcchhhccCCCccCCCcccCCcc
Confidence            45667888889999999999999887776554 9999998887554333322111110000000      0000111222


Q ss_pred             cHHHHHHH----HHHHHHhhCCCCCCHHHHHHHhcccCcchHHHHHHHHHHHHHHhcCHhhhhccccCCCCHHHHHhhhc
Q psy12903        128 TLEDFHDQ----FMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEV  203 (267)
Q Consensus       128 ~~edF~~~----f~~li~~i~~~~~~~~~L~~~fnd~~~s~yiV~~LR~lts~~i~~n~d~f~pFi~~~~~~~~yC~~~V  203 (267)
                      ++.-|...    ++.+++... +.....-|.+.- -...-+..|..||..+|..+.+|+|.|.+.+.+ .+.-.||..-|
T Consensus        96 ~iss~e~s~~qq~~nv~ed~p-~~~d~srl~q~~-~~~l~~asv~~lrE~vs~Ev~snPDl~n~~i~~-~~~i~y~~~i~  172 (306)
T COG5539          96 GISSFEKSVSQQSINVLEDMP-GQDDNSRLFQAE-RYSLRDASVAKLREVVSLEVLSNPDLYNPAILE-IDVIAYATWIV  172 (306)
T ss_pred             ccccCcccccccccchhccCC-CCCchHHHHHHH-HhhhhhhhHHHHHHHHHHHHhhCccccchhhcC-cchHHHHHhhh
Confidence            12112111    233332222 110011111100 011223478999999999999999999999987 57889999754


Q ss_pred             ccccccc-hHHHHHHHHHhcCCcEEEEEccCCCCCccceecCCCCCCCeEEEEecCCCccccc
Q psy12903        204 EPMFKES-DHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLLYRPGHYDILY  265 (267)
Q Consensus       204 e~~~~e~-d~i~I~ALs~aL~v~I~V~~ld~~~~~~v~~~~f~e~~~p~I~LLYrpGHYDILY  265 (267)
                       .+..|+ |+++|.+||..|++.|.|+-+|.+.....+.+    .....+..+|.++|||-.+
T Consensus       173 -k~d~~~dG~ieia~iS~~l~v~i~~Vdv~~~~~dr~~~~----~~~q~~~i~f~g~hfD~~t  230 (306)
T COG5539         173 -KPDSQGDGCIEIAIISDQLPVRIHVVDVDKDSEDRYNSH----PYVQRISILFTGIHFDEET  230 (306)
T ss_pred             -ccccCCCceEEEeEeccccceeeeeeecchhHHhhccCC----hhhhhhhhhhcccccchhh
Confidence             577788 89999999999999999888876542222222    2234588999999999876

>KOG3288|consensus

Probab=98.31  E-value=8e-07  Score=80.02  Aligned_cols=92  Identities=27%  Similarity=0.293  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHhcCHhhhhccccCCCCHHHHHhhhcccccccchHHHHHHHHHhcCCcEEEEEccCCCCCccceecCCCC
Q psy12903        168 VYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPED  247 (267)
Q Consensus       168 ~~LR~lts~~i~~n~d~f~pFi~~~~~~~~yC~~~Ve~~~~e~d~i~I~ALs~aL~v~I~V~~ld~~~~~~v~~~~f~e~  247 (267)
                      ..||.++|..+-.|++.|..=+-| .+=.+||. -|..+..|||-|+|..||..+++-|-|+-++..     ....|.++
T Consensus       139 ~elR~iiA~~Vasnp~~yn~AiLg-K~n~eYc~-WI~k~dsWGGaIElsILS~~ygveI~vvDiqt~-----rid~fged  211 (307)
T KOG3288|consen  139 YELREIIAQEVASNPDKYNDAILG-KPNKEYCA-WILKMDSWGGAIELSILSDYYGVEICVVDIQTV-----RIDRFGED  211 (307)
T ss_pred             HHHHHHHHHHHhcChhhhhHHHhC-CCcHHHHH-HHccccccCceEEeeeehhhhceeEEEEeccee-----eehhcCCC
Confidence            369999999999999999866655 36679998 588899999999999999999999988755433     23346554


Q ss_pred             --CCCeEEEEecCCCcccccc
Q psy12903        248 --KPPQIHLLYRPGHYDILYP  266 (267)
Q Consensus       248 --~~p~I~LLYrpGHYDILY~  266 (267)
                        -..+|.|+|--=|||.|+.
T Consensus       212 ~~~~~rv~llydGIHYD~l~m  232 (307)
T KOG3288|consen  212 KNFDNRVLLLYDGIHYDPLAM  232 (307)
T ss_pred             CCCCceEEEEecccccChhhh
Confidence              3457999998889999864

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=97.11  E-value=0.00032  Score=64.51  Aligned_cols=91  Identities=12%  Similarity=-0.052  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHhcCHhhhhccccCC-----CCHHHHHhhhcccccccchHHHHHHHHHhcCCcEEEEEccCCCCCcccee
Q psy12903        168 VYLRLIASGQLQQDADFYQNFIEGN-----RTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAH  242 (267)
Q Consensus       168 ~~LR~lts~~i~~n~d~f~pFi~~~-----~~~~~yC~~~Ve~~~~e~d~i~I~ALs~aL~v~I~V~~ld~~~~~~v~~~  242 (267)
                      ..+|..-..|.+.+...|.++..+.     ..+++||. +|++.+.||..++|+|||..|++|+.+..-.+.   .+.+-
T Consensus       204 ~~dr~~~~~~~q~~~i~f~g~hfD~~t~~m~~~dt~~n-e~~~~a~~g~~~ei~qLas~lk~~~~~~nT~~~---~ik~n  279 (306)
T COG5539         204 SEDRYNSHPYVQRISILFTGIHFDEETLAMVLWDTYVN-EVLFDASDGITIEIQQLASLLKNPHYYTNTASP---SIKCN  279 (306)
T ss_pred             HHhhccCChhhhhhhhhhcccccchhhhhcchHHHHHh-hhcccccccchHHHHHHHHHhcCceEEeecCCc---eEEee
Confidence            6788888889999999999999764     26899997 699999999999999999999999988644333   12111


Q ss_pred             cCCCCCCCeEEE-----EecCCCcccc
Q psy12903        243 DFPEDKPPQIHL-----LYRPGHYDIL  264 (267)
Q Consensus       243 ~f~e~~~p~I~L-----LYrpGHYDIL  264 (267)
                        +-+.++...+     +|--||||.+
T Consensus       280 --~c~~~~~~e~~~~~Ha~a~GH~n~~  304 (306)
T COG5539         280 --ICGTGFVGEKDYYAHALATGHYNFG  304 (306)
T ss_pred             --ccccccchhhHHHHHHHhhcCcccc
Confidence              1123333333     3345899976

>KOG2605|consensus

Probab=94.15  E-value=0.07  Score=51.28  Aligned_cols=50  Identities=18%  Similarity=0.303  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHhcCHhhhhccccCCCCHHHHHhhhcccccccchHHHHHHHHHh
Q psy12903        169 YLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIALSTA  221 (267)
Q Consensus       169 ~LR~lts~~i~~n~d~f~pFi~~~~~~~~yC~~~Ve~~~~e~d~i~I~ALs~a  221 (267)
                      +.|.....+++++++.|..|+++  ++.+|... -..-+.||+|++++|+|..
T Consensus       247 ~~~~~~~dq~~~e~~~~~~~vt~--~~~~y~k~-kr~~~~~gnhie~Qa~a~~  296 (371)
T KOG2605|consen  247 HNRRECVDQLKKERDFYEDYVTE--DFTSYIKR-KRADGEPGNHIEQQAAADI  296 (371)
T ss_pred             HHHHHHHHHHhhccccccccccc--chhhcccc-cccCCCCcchHHHhhhhhh
Confidence            56777888999999999999975  68888765 3447789999999999963

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	267
4ddg_A	399	Crystal Structure Of Human Otub1UBCH5B~UBUB Length		2e-66
2zfy_A	234	Crystal Structure Of Human Otubain 1 Length = 234		4e-65
3von_A	228	Crystalstructure Of The Ubiquitin Protease Length =		5e-65
4i6l_A	229	Crystal Structure Of Otub1 In Complex With Ubiquiti		9e-64
1tff_A	234	Structure Of Otubain-2 Length = 234		2e-39
4dhz_A	288	The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~		4e-38
4dhi_B	284	Structure Of C. Elegans Otub1 Bound To Human Ubc13		1e-37

>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB Length = 399

Iteration: 1
 Score =  248 bits (633), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 124/247 (50%), Positives = 179/247 (72%), Gaps = 11/247 (4%)
Query: 27  DDLILQQSKNIEKEISDSIMLVGDKEDIMVLEQQYIGDE-VYKGKVKDLARKYSNLRRTR 85
           D+ I+ Q   I++EI+    LV ++ ++ VL ++Y  D+ +Y+ K+KDL +KYS +R+TR
Sbjct: 155 DEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTR 214
Query: 86  PDGNCFFRSFGFALLESLYHLD-------FRLIAEKSKDKLLELGFQKFTLEDFHDQFME 138
           PDGN F+R+FGF+ LE+L  LD       F+ ++ KSK+ L+  GF +FT+EDFH+ FM+
Sbjct: 215 PDGNSFYRAFGFSHLEAL--LDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMD 272
Query: 139 VVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEF 198
           ++  + K +T+   L+  FN++  SDY+VVYLRL+ SG LQ+++ F+++FIEG RTV EF
Sbjct: 273 LIEQVEK-QTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEF 331
Query: 199 CRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLLYRP 258
           C+QEVEPM KESDHIHIIAL+ AL V ++V YMDRG+      H FPE   P+++LLYRP
Sbjct: 332 CQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLLYRP 391
Query: 259 GHYDILY 265
           GHYDILY
Sbjct: 392 GHYDILY 398

>pdb|2ZFY|A Chain A, Crystal Structure Of Human Otubain 1 Length = 234

Iteration: 1
 Score =  244 bits (623), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 121/234 (51%), Positives = 172/234 (73%), Gaps = 11/234 (4%)
Query: 40  EISDSIMLVGDKEDIMVLEQQYIGDE-VYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFA 98
           EI+    LV ++ ++ VL ++Y  D+ +Y+ K+KDL +KYS +R+TRPDGNCF+R+FGF+
Sbjct: 3   EIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFS 62
Query: 99  LLESLYHLD-------FRLIAEKSKDKLLELGFQKFTLEDFHDQFMEVVNLISKPETNED 151
            LE+L  LD       F+ ++ KSK+ L+  GF +FT+EDFH+ FM+++  + K +T+  
Sbjct: 63  HLEAL--LDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEK-QTSVA 119
Query: 152 TLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESD 211
            L+  FN++  SDY+VVYLRL+ SG LQ+++ F+++FIEG RTV EFC+QEVEPM KESD
Sbjct: 120 DLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESD 179
Query: 212 HIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLLYRPGHYDILY 265
           HIHIIAL+ AL V ++V YMDRG+      H FPE   P+++LLYRPGHYDILY
Sbjct: 180 HIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLLYRPGHYDILY 233

>pdb|3VON|A Chain A, Crystalstructure Of The Ubiquitin Protease Length = 228

Iteration: 1
 Score =  244 bits (622), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 119/227 (52%), Positives = 169/227 (74%), Gaps = 11/227 (4%)
Query: 47  LVGDKEDIMVLEQQYIGDE-VYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFALLESLYH 105
           LV ++ ++ VL ++Y  D+ +Y+ K+KDL +KYS +R+TRPDGNCF+R+FGF+ LE+L  
Sbjct: 4   LVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEAL-- 61
Query: 106 LD-------FRLIAEKSKDKLLELGFQKFTLEDFHDQFMEVVNLISKPETNEDTLVEVFN 158
           LD       F+ ++ KSK+ L+  GF +FT+EDFH+ FM+++  + K +T+   L+  FN
Sbjct: 62  LDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEK-QTSVADLLASFN 120
Query: 159 NKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIAL 218
           ++  SDY+VVYLRL+ SG LQ+++ F+++FIEG RTV EFC+QEVEPM KESDHIHIIAL
Sbjct: 121 DQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIAL 180
Query: 219 STALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLLYRPGHYDILY 265
           + AL V ++V YMDRG+      H FPE   P+++LLYRPGHYDILY
Sbjct: 181 AQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLLYRPGHYDILY 227

>pdb|4I6L|A Chain A, Crystal Structure Of Otub1 In Complex With Ubiquitin Variant Length = 229

Iteration: 1
 Score =  239 bits (611), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 118/227 (51%), Positives = 168/227 (74%), Gaps = 11/227 (4%)
Query: 47  LVGDKEDIMVLEQQYIGDE-VYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFALLESLYH 105
           LV ++ ++ VL ++Y  D+ +Y+ K+KDL +KYS +R+TRPDGN F+R+FGF+ LE+L  
Sbjct: 5   LVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNSFYRAFGFSHLEAL-- 62
Query: 106 LD-------FRLIAEKSKDKLLELGFQKFTLEDFHDQFMEVVNLISKPETNEDTLVEVFN 158
           LD       F+ ++ KSK+ L+  GF +FT+EDFH+ FM+++  + K +T+   L+  FN
Sbjct: 63  LDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEK-QTSVADLLASFN 121
Query: 159 NKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIAL 218
           ++  SDY+VVYLRL+ SG LQ+++ F+++FIEG RTV EFC+QEVEPM KESDHIHIIAL
Sbjct: 122 DQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIAL 181
Query: 219 STALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLLYRPGHYDILY 265
           + AL V ++V YMDRG+      H FPE   P+++LLYRPGHYDILY
Sbjct: 182 AQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLLYRPGHYDILY 228

>pdb|1TFF|A Chain A, Structure Of Otubain-2 Length = 234

Iteration: 1
 Score =  159 bits (401), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 81/228 (35%), Positives = 141/228 (61%), Gaps = 7/228 (3%)
Query: 44  SIMLVGDKEDIMVLEQQYIGDEVYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFALLESL 103
           S  L+ +K DI+ + + +  + +Y+ K+++L+++++ +R+T+ D NCF+R+ G++ LESL
Sbjct: 5   SFNLISEKCDILSILRDHPENRIYRRKIEELSKRFTAIRKTKGDRNCFYRALGYSYLESL 64
Query: 104 YH-----LDFRLIAEKSKDKLLELGFQKFTLEDFHDQFMEVVNLISKPETNEDTLVEVFN 158
                    F+    ++ + LL  GF++    +F + F  VV L+ K + +  +L++VFN
Sbjct: 65  LGKSREIFKFKERVLQTPNDLLAAGFEEHKFRNFFNAFYSVVELVEK-DGSVSSLLKVFN 123
Query: 159 NKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIAL 218
           ++  SD++V +LRL+ S  ++  ADF+++FI+    + +FC  EVEP   E DHI I AL
Sbjct: 124 DQSASDHIVQFLRLLTSAFIRNRADFFRHFIDEEXDIKDFCTHEVEPXATECDHIQITAL 183
Query: 219 STALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLLYRPGHYDILYP 266
           S AL + ++V Y+D  D T    H FPE   P ++LLY+  HY+ILY 
Sbjct: 184 SQALSIALQVEYVDEMD-TALNHHVFPEAATPSVYLLYKTSHYNILYA 230

>pdb|4DHZ|A Chain A, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub Length = 288

Iteration: 1
 Score =  154 bits (390), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 90/259 (34%), Positives = 140/259 (54%), Gaps = 11/259 (4%)
Query: 18  SEDANQVNQDDLILQQSKNIEKEISDSIMLVGDKEDIMVLEQQYIGD--EVYKGKVKDLA 75
           SE  N +  D+ I+ Q   I++EI+    LV       +L  +Y  +    +  K  +L+
Sbjct: 18  SEGVNCLAYDEAIMAQQDRIQQEIAVQNPLVATLAPFSILCAEYDNETSAAFLSKATELS 77
Query: 76  RKYSNLRRTRPDGNCFFRSFGFALLESLYHLDFRL--IAEKSKD---KLLELGFQKFTLE 130
             Y  +R  R DGNCF+R+    L+E +     RL      S+D    L+ELGF  +T  
Sbjct: 78  EVYGEIRYIRGDGNCFYRAILVGLIEIMLKDRARLEKFIASSRDWTRTLVELGFPDWTCT 137
Query: 131 DFHDQFMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIE 190
           DF D F+E +  I      E+ +  + N+   ++Y++++ RLI S  L+Q+++ Y  FI+
Sbjct: 138 DFCDFFIEFLEKIHSGVHTEEAVYTILNDDGSANYILMFFRLITSAFLKQNSEEYAPFID 197
Query: 191 GNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAH-DFPEDK- 248
              TV ++C QE+EPM+K++DH+ I +L  A    VR+ YMDR  +     H D P D  
Sbjct: 198 EGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYDIPSDDQ 257
Query: 249 --PPQIHLLYRPGHYDILY 265
              P+I LLYRPGHYD++Y
Sbjct: 258 QIAPEITLLYRPGHYDVIY 276

>pdb|4DHI|B Chain B, Structure Of C. Elegans Otub1 Bound To Human Ubc13 Length = 284

Iteration: 1
 Score =  153 bits (386), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 98/272 (36%), Positives = 148/272 (54%), Gaps = 16/272 (5%)
Query: 7   EPDQASFDKGYSEDANQVNQDDLILQ--QSKNIEKEISDSIMLVGDKEDIMVLEQQYIGD 64
           EP Q S D G + +A  V  D+++LQ  Q K IE E   S+ LV       +L  +Y  +
Sbjct: 4   EP-QKSDDNGQAAEA-VVTDDEIVLQDQQLKTIEDE-QKSVPLVATLAPFSILCAEYDNE 60
Query: 65  --EVYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFALLESLYHLDFRL--IAEKSKD--- 117
               +  K  +L+  Y  +R  R DGNCF+R+    L+E +     RL      S+D   
Sbjct: 61  TSAAFLSKATELSEVYGEIRYIRGDGNCFYRAILVGLIEIMLKDRARLEKFIASSRDWTR 120
Query: 118 KLLELGFQKFTLEDFHDQFMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQ 177
            L+ELGF  +T  DF D F+E +  I      E+ +  + N+   ++Y++++ RLI S  
Sbjct: 121 TLVELGFPDWTCTDFCDFFIEFLEKIHSGVHTEEAVYTILNDDGSANYILMFFRLITSAF 180
Query: 178 LQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDST 237
           L+Q+++ Y  FI+   TV ++C QE+EPM+K++DH+ I +L  A    VR+ YMDR  + 
Sbjct: 181 LKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAP 240
Query: 238 EAIAH-DFPEDK---PPQIHLLYRPGHYDILY 265
               H D P D     P+I LLYRPGHYD++Y
Sbjct: 241 NGGWHYDIPSDDQQIAPEITLLYRPGHYDVIY 272

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	267
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	3e-99
4dhi_B	284	Ubiquitin thioesterase otubain-like; ubiquitin E2	2e-84
1tff_A	234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	4e-82
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	4e-80
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	5e-06
3pfy_A	185	OTU domain-containing protein 5; structural genomi	1e-05
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Length = 399

 Score =  294 bits (755), Expect = 3e-99
 Identities = 120/240 (50%), Positives = 172/240 (71%), Gaps = 7/240 (2%)

Query: 32  QQSKNIEKEISDSIMLVGDKEDIMVLEQQY-IGDEVYKGKVKDLARKYSNLRRTRPDGNC 90
            Q   I++EI+    LV ++ ++ VL ++Y   D +Y+ K+KDL +KYS +R+TRPDGN 
Sbjct: 160 AQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNS 219

Query: 91  FFRSFGFALLESLYH-----LDFRLIAEKSKDKLLELGFQKFTLEDFHDQFMEVVNLISK 145
           F+R+FGF+ LE+L         F+ ++ KSK+ L+  GF +FT+EDFH+ FM+++  + K
Sbjct: 220 FYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEK 279

Query: 146 PETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEP 205
            +T+   L+  FN++  SDY+VVYLRL+ SG LQ+++ F+++FIEG RTV EFC+QEVEP
Sbjct: 280 -QTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEP 338

Query: 206 MFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLLYRPGHYDILY 265
           M KESDHIHIIAL+ AL V ++V YMDRG+      H FPE   P+++LLYRPGHYDILY
Sbjct: 339 MCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLLYRPGHYDILY 398

>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A Length = 284

 Score =  253 bits (646), Expect = 2e-84
 Identities = 83/278 (29%), Positives = 137/278 (49%), Gaps = 17/278 (6%)

Query: 1   MADDNIEPDQASFDKGYSEDANQVNQDDLILQQSKN-IEKEISDSIMLVGDKEDIMVLEQ 59
           MA++  + D              V  D+++LQ  +    ++   S+ LV       +L  
Sbjct: 1   MANEPQKSDDNG-----QAAEAVVTDDEIVLQDQQLKTIEDEQKSVPLVATLAPFSILCA 55

Query: 60  QY--IGDEVYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFALLESLYH-----LDFRLIA 112
           +Y       +  K  +L+  Y  +R  R DGNCF+R+    L+E +         F   +
Sbjct: 56  EYDNETSAAFLSKATELSEVYGEIRYIRGDGNCFYRAILVGLIEIMLKDRARLEKFIASS 115

Query: 113 EKSKDKLLELGFQKFTLEDFHDQFMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRL 172
                 L+ELGF  +T  DF D F+E +  I      E+ +  + N+   ++Y++++ RL
Sbjct: 116 RDWTRTLVELGFPDWTCTDFCDFFIEFLEKIHSGVHTEEAVYTILNDDGSANYILMFFRL 175

Query: 173 IASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMD 232
           I S  L+Q+++ Y  FI+   TV ++C QE+EPM+K++DH+ I +L  A    VR+ YMD
Sbjct: 176 ITSAFLKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMD 235

Query: 233 RGDSTEAIAHDF----PEDKPPQIHLLYRPGHYDILYP 266
           R  +     H       +   P+I LLYRPGHYD++Y 
Sbjct: 236 RTAAPNGGWHYDIPSDDQQIAPEITLLYRPGHYDVIYK 273

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11 Length = 234

 Score =  245 bits (626), Expect = 4e-82
 Identities = 80/229 (34%), Positives = 142/229 (62%), Gaps = 7/229 (3%)

Query: 43  DSIMLVGDKEDIMVLEQQYIGDEVYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFALLES 102
            S  L+ +K DI+ + + +  + +Y+ K+++L+++++ +R+T+ D NCF+R+ G++ LES
Sbjct: 4   TSFNLISEKCDILSILRDHPENRIYRRKIEELSKRFTAIRKTKGDRNCFYRALGYSYLES 63

Query: 103 LYH-----LDFRLIAEKSKDKLLELGFQKFTLEDFHDQFMEVVNLISKPETNEDTLVEVF 157
           L         F+    ++ + LL  GF++    +F + F  VV L+ + + +  +L++VF
Sbjct: 64  LLGKSREIFKFKERVLQTPNDLLAAGFEEHKFRNFFNAFYSVVELV-EKDGSVSSLLKVF 122

Query: 158 NNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIA 217
           N++  SD++V +LRL+ S  ++  ADF+++FI+    + +FC  EVEPM  E DHI I A
Sbjct: 123 NDQSASDHIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITA 182

Query: 218 LSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLLYRPGHYDILYP 266
           LS AL + ++V Y+D  D+     H FPE   P ++LLY+  HY+ILY 
Sbjct: 183 LSQALSIALQVEYVDEMDT-ALNHHVFPEAATPSVYLLYKTSHYNILYA 230

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A Length = 234

 Score =  240 bits (614), Expect = 4e-80
 Identities = 118/232 (50%), Positives = 168/232 (72%), Gaps = 7/232 (3%)

Query: 40  EISDSIMLVGDKEDIMVLEQQY-IGDEVYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFA 98
           EI+    LV ++ ++ VL ++Y   D +Y+ K+KDL +KYS +R+TRPDGNCF+R+FGF+
Sbjct: 3   EIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFS 62

Query: 99  LLESLYHLD-----FRLIAEKSKDKLLELGFQKFTLEDFHDQFMEVVNLISKPETNEDTL 153
            LE+L         F+ ++ KSK+ L+  GF +FT+EDFH+ FM+++  +   +T+   L
Sbjct: 63  HLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVE-KQTSVADL 121

Query: 154 VEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHI 213
           +  FN++  SDY+VVYLRL+ SG LQ+++ F+++FIEG RTV EFC+QEVEPM KESDHI
Sbjct: 122 LASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHI 181

Query: 214 HIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLLYRPGHYDILY 265
           HIIAL+ AL V ++V YMDRG+      H FPE   P+++LLYRPGHYDILY
Sbjct: 182 HIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLLYRPGHYDILY 233

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200} Length = 219

 Score = 45.5 bits (107), Expect = 5e-06
 Identities = 23/188 (12%), Positives = 48/188 (25%), Gaps = 61/188 (32%)

Query: 81  LRRTRPDGNCFFRSFGFALLESLYHLDFRLIAEKSKDKLLELGFQKFTLEDFHDQFMEVV 140
           + R   DGNCF+ S     + +     +  I                  E    ++ +  
Sbjct: 33  IVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKR--------------LTESAARKYYQ-- 76

Query: 141 NLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCR 200
                     +            DY+          ++  D ++                
Sbjct: 77  ----------EEPEARLVGLSLEDYLK---------RMLSDNEW---------------- 101

Query: 201 QEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLLY-RPG 259
                       +    L+  + + + +  +   D  EA       D    ++LL+    
Sbjct: 102 ---------GSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGDVFTAVNLLHSGQT 152

Query: 260 HYDILYPL 267
           H+D L  L
Sbjct: 153 HFDALRIL 160

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A* Length = 185

 Score = 44.0 bits (103), Expect = 1e-05
 Identities = 17/99 (17%), Positives = 39/99 (39%), Gaps = 6/99 (6%)

Query: 170 LRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVR 229
           +R      L ++AD++ N++  +     +  ++ +      +HI + A++   +  V V 
Sbjct: 89  VRKHCMDYLMKNADYFSNYVTED--FTTYINRKRKNNC-HGNHIEMQAMAEMYNRPVEV- 144

Query: 230 YMDRGDSTEAIAHDFPEDKPPQIHLLY-RPGHYDILYPL 267
           Y    +           +  P I + Y R  HY+ +   
Sbjct: 145 YQYSTEPINTFHGIHQNEDEP-IRVSYHRNIHYNSVVNP 182

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A Length = 185

 Score = 42.3 bits (99), Expect = 4e-05
 Identities = 23/188 (12%), Positives = 49/188 (26%), Gaps = 61/188 (32%)

Query: 81  LRRTRPDGNCFFRSFGFALLESLYHLDFRLIAEKSKDKLLELGFQKFTLEDFHDQFMEVV 140
           + R   DGNCF+ S     + +     +  I   ++               ++ +  E  
Sbjct: 33  IVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAA----------RKYYQEEPE-- 80

Query: 141 NLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCR 200
                                  DY+          ++  D ++                
Sbjct: 81  --------------ARLVGLSLEDYLK---------RMLSDNEW---------------- 101

Query: 201 QEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLLY-RPG 259
                       +    L+  + + + +  +   D  EA       D    ++LL+    
Sbjct: 102 ---------GSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGDVFTAVNLLHSGQT 152

Query: 260 HYDILYPL 267
           H+D L  L
Sbjct: 153 HFDALRIL 160

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 3e-04
 Identities = 36/214 (16%), Positives = 65/214 (30%), Gaps = 57/214 (26%)

Query: 19  EDANQVNQDDLILQQSKNIEKEISD-SIMLVGDKEDIMVLEQQYIGDEVYKGKVKDLARK 77
              N++++  L+ +Q K     I    + L    E+   L +  +  + Y      + + 
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV--DHYN-----IPKT 458

Query: 78  YSNLRRTRP-DGNCFFRSFGFALLESLYHLDFRLIAEKSKDKLLELGFQKFTLEDFHDQF 136
           + +     P     F+   G       +HL      E+         F+   L DF   F
Sbjct: 459 FDSDDLIPPYLDQYFYSHIG-------HHLKNIEHPERMT------LFRMVFL-DFR--F 502

Query: 137 MEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVF 196
           +E    I    T  +    + N                     Q   FY+ +I  N   +
Sbjct: 503 LE--QKIRHDSTAWNASGSILN-------------------TLQQLKFYKPYICDNDPKY 541

Query: 197 E--------FCRQEVEPMFKESDHIHI--IALST 220
           E        F  + +E     S +  +  IAL  
Sbjct: 542 ERLVNAILDFLPK-IEENLICSKYTDLLRIALMA 574

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	267
4dhi_B	284	Ubiquitin thioesterase otubain-like; ubiquitin E2	100.0
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	100.0
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	100.0
1tff_A	234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	100.0
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	99.91
3pfy_A	185	OTU domain-containing protein 5; structural genomi	99.87
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.83
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.82
3dkb_A	390	Tumor necrosis factor, alpha-induced protein 3; OT	92.68
3zrh_A	454	Ubiquitin thioesterase zranb1; hydrolase, deubiqui	90.5

>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A

Probab=100.00  E-value=1.3e-82  Score=578.88  Aligned_cols=251  Identities=33%  Similarity=0.618  Sum_probs=216.9

Q ss_pred             CcccCCCCCchHHHHHHHHHHH--HHhhccCCCcccccchHHHHHhccC-C-hHHHHHHHHHHHhcccceeccCCCcchh
Q psy12903         17 YSEDANQVNQDDLILQQSKNIE--KEISDSIMLVGDKEDIMVLEQQYIG-D-EVYKGKVKDLARKYSNLRRTRPDGNCFF   92 (267)
Q Consensus        17 ~~~~~~~~~~de~~~~q~~~i~--~e~~~~~plV~~~~~l~~L~~eY~~-~-~~~~~Ki~~L~~~y~~~R~vRGDGNCFY   92 (267)
                      ...+.+++++||+|++|+++|+  +||++++||||+++|++.|.+||++ + |+|++|+++|.++|+++|+|||||||||
T Consensus        11 ~~~~~~~~~~de~i~~q~~~i~~~~e~a~~~PLVg~~~~~~~L~~EYa~~~~~~~~~Ki~~L~~~Y~~~R~~RGDGNCFy   90 (284)
T 4dhi_B           11 NGQAAEAVVTDDEIVLQDQQLKTIEDEQKSVPLVATLAPFSILCAEYDNETSAAFLSKATELSEVYGEIRYIRGDGNCFY   90 (284)
T ss_dssp             ---------------------------CTTCCSBCCCEEGGGGGGCTTSCCSHHHHHHHHHHHTTEEEEECBCCSTTHHH
T ss_pred             cccccCCcCcHHHHHHHHHHhHhhhhhhccCCCcCCcCcHHHHHHHhccCchHHHHHHHHHHHHhccceeeecCCCchhH
Confidence            4457778899999999999999  9999999999999999999999994 4 5999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhCCCCCCHHHHHHHhcccCcchHHH
Q psy12903         93 RSFGFALLESLYH-----LDFRLIAEKSKDKLLELGFQKFTLEDFHDQFMEVVNLISKPETNEDTLVEVFNNKDYSDYVV  167 (267)
Q Consensus        93 RAf~F~ylE~ll~-----~~~~~~v~~~~~~L~~~g~~~~~~edF~~~f~~li~~i~~~~~~~~~L~~~fnd~~~s~yiV  167 (267)
                      |||+|+|||+|+.     .||++.+++++..|.++||++++++||+++|+++|++|+++..+.+.|+++|||+..|+|+|
T Consensus        91 RAf~F~ylE~Ll~~~~e~~r~~~~~~~s~~~L~~~G~~~~~~eDF~d~f~ell~~i~~~~~~~~~L~~~Fnd~~~S~~iv  170 (284)
T 4dhi_B           91 RAILVGLIEIMLKDRARLEKFIASSRDWTRTLVELGFPDWTCTDFCDFFIEFLEKIHSGVHTEEAVYTILNDDGSANYIL  170 (284)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHSHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHCCCchhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHhcCcccchHHH
Confidence            9999999999999     68899999999999999999999999999999999999866668999999999999999999


Q ss_pred             HHHHHHHHHHHhcCHhhhhccccCCCCHHHHHhhhcccccccchHHHHHHHHHhcCCcEEEEEccCCCCCccceec-CCC
Q psy12903        168 VYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHD-FPE  246 (267)
Q Consensus       168 ~~LR~lts~~i~~n~d~f~pFi~~~~~~~~yC~~~Ve~~~~e~d~i~I~ALs~aL~v~I~V~~ld~~~~~~v~~~~-f~e  246 (267)
                      ++||++||+||++|+++|+|||++++++++||+++|+||++||||++|+|||++||+||+|+|+|+++|.+++.|. ||+
T Consensus       171 ~~LRllts~yi~~~~d~f~pFi~~~~~v~~yC~~eVe~~~~e~d~leI~ALa~aL~v~I~V~ylDrs~g~~v~~h~~fp~  250 (284)
T 4dhi_B          171 MFFRLITSAFLKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYDIPS  250 (284)
T ss_dssp             HHHHHHHHHHHHHTHHHHGGGSCTTCCHHHHHHHHTSSTTCCCCHHHHHHHHHHTTCCEEEEESSGGGCTTSSSEEEESC
T ss_pred             HHHHHHHHHHHHHCHHHHHhhcCCCCCHHHHHHHhceehhhcccHHHHHHHHHHhCCcEEEEEecCCCCCCCcccccCCC
Confidence            9999999999999999999999988899999999999999999999999999999999999999999999999998 988


Q ss_pred             CCC---CeEEEEecCCCccccccC
Q psy12903        247 DKP---PQIHLLYRPGHYDILYPL  267 (267)
Q Consensus       247 ~~~---p~I~LLYrpGHYDILY~~  267 (267)
                      +..   |.|+|||||||||||||+
T Consensus       251 ~~~~~~p~I~LLYrpgHYDILY~~  274 (284)
T 4dhi_B          251 DDQQIAPEITLLYRPGHYDVIYKK  274 (284)
T ss_dssp             CCSCCCCSEEEEEETTEEEEEEEC
T ss_pred             CCCCCCCEEEEeecCCCccccccC
Confidence            755   899999999999999985

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A

Probab=100.00  E-value=1.8e-74  Score=515.40  Aligned_cols=228  Identities=52%  Similarity=0.955  Sum_probs=213.4

Q ss_pred             HHHhhccCCCcccccchHHHHHhcc-CChHHHHHHHHHHHhcccceeccCCCcchhHHHHHHHHHHHHh-----hHHHHH
Q psy12903         38 EKEISDSIMLVGDKEDIMVLEQQYI-GDEVYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFALLESLYH-----LDFRLI  111 (267)
Q Consensus        38 ~~e~~~~~plV~~~~~l~~L~~eY~-~~~~~~~Ki~~L~~~y~~~R~vRGDGNCFYRAf~F~ylE~ll~-----~~~~~~  111 (267)
                      ++||++++||||+++|+++|.+||+ +|++|++|+++|.++|+++|+||||||||||||+|+|||+|+.     .||++.
T Consensus         1 ~~e~~~~~plv~~~~~~~~L~~eY~~~~~~~~~K~~~L~~~y~~~R~vRgDGNCFyRaf~f~ylE~ll~~~~e~~r~~~~   80 (234)
T 2zfy_A            1 GSEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAV   80 (234)
T ss_dssp             -------CCSBCCCEEGGGGGGGSCTTCHHHHHHHHHHTTTCCEEECBCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CchhhhcCCCCCCccCHHHHHHHHccCCHHHHHHHHHHHHhccceeeccCCccHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            4688889999999999999999999 8999999999999999999999999999999999999999999     789999


Q ss_pred             HHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhCCCCCCHHHHHHHhcccCcchHHHHHHHHHHHHHHhcCHhhhhccccC
Q psy12903        112 AEKSKDKLLELGFQKFTLEDFHDQFMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEG  191 (267)
Q Consensus       112 v~~~~~~L~~~g~~~~~~edF~~~f~~li~~i~~~~~~~~~L~~~fnd~~~s~yiV~~LR~lts~~i~~n~d~f~pFi~~  191 (267)
                      +.++++.|..+||++++++||+++|+++|++|++ ..+.+.|+++|||+..|+++|++||++||+||++|+++|+|||++
T Consensus        81 ~~~~~~~l~~~g~~~~~~edf~~~f~~ll~~i~~-~~~~~~L~~~fndq~~s~~~v~~lR~lta~yi~~~~d~f~pFi~~  159 (234)
T 2zfy_A           81 SAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEK-QTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEG  159 (234)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHTHHHHGGGCCS
T ss_pred             HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHhhccchHHHHHHHHHHHHHHHHCHHHHhcccCC
Confidence            9999999999999999999999999999999984 569999999999999999999999999999999999999999998


Q ss_pred             CCCHHHHHhhhcccccccchHHHHHHHHHhcCCcEEEEEccCCCCCccceecCCCCCCCeEEEEecCCCcccccc
Q psy12903        192 NRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLLYRPGHYDILYP  266 (267)
Q Consensus       192 ~~~~~~yC~~~Ve~~~~e~d~i~I~ALs~aL~v~I~V~~ld~~~~~~v~~~~f~e~~~p~I~LLYrpGHYDILY~  266 (267)
                      +.++++||.++|+||++||||++|+|||++|++||+|+|+|+++|..++.|.||+++.|+|+|||||||||||||
T Consensus       160 ~~~~e~yc~~~ve~~~~~~~~i~i~ALa~al~v~I~V~~~d~~~~~~v~~~~f~~~~~p~I~LlY~pgHYdiLy~  234 (234)
T 2zfy_A          160 GRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLLYRPGHYDILYK  234 (234)
T ss_dssp             SCCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-CCSSCCEEEEESTTCCCSEEEEEETTEEEEEEC
T ss_pred             CCCHHHHHHHHhhhHhhcCCHHHHHHHHHHhCCCEEEEEcCCCCCCcccceeCCCCCCCeEEEEECCCCcccCCC
Confidence            789999999999999999999999999999999999999999988889999999988999999999999999997

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=100.00  E-value=7e-74  Score=546.43  Aligned_cols=246  Identities=49%  Similarity=0.891  Sum_probs=236.5

Q ss_pred             cCCCCCchHHHHHHHHHHHHHhhccCCCcccccchHHHHHhcc-CChHHHHHHHHHHHhcccceeccCCCcchhHHHHHH
Q psy12903         20 DANQVNQDDLILQQSKNIEKEISDSIMLVGDKEDIMVLEQQYI-GDEVYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFA   98 (267)
Q Consensus        20 ~~~~~~~de~~~~q~~~i~~e~~~~~plV~~~~~l~~L~~eY~-~~~~~~~Ki~~L~~~y~~~R~vRGDGNCFYRAf~F~   98 (267)
                      ..+..++||+|++|+++|++|+++++||||+++|+++|.+||+ ++|+|++|+++|.++|+++|+||||||||||||+|+
T Consensus       148 a~~~v~~De~i~~q~~~I~~e~~~~~plv~~~~~~~~L~~eY~~~~~~~~~k~~~L~~~y~~~R~vrgDGNCFYRAf~f~  227 (399)
T 4ddg_A          148 AMGGSAYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNSFYRAFGFS  227 (399)
T ss_dssp             TSCTTHHHHHHHHHHHHHHHHHHHHSCSBCCCEEGGGHHHHSCTTCHHHHHHHHHHHHHCSEEECBCCSSCHHHHHHHHH
T ss_pred             hccccchhHHHHHHHHHHHhhhccCCCCcCCcCCHHHHHHHhhccChHHHHHHHHHHhhcCeeeeecCCCchHHHHHHHH
Confidence            4557789999999999999999999999999999999999998 789999999999999999999999999999999999


Q ss_pred             HHHHHHh-----hHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhCCCCCCHHHHHHHhcccCcchHHHHHHHHH
Q psy12903         99 LLESLYH-----LDFRLIAEKSKDKLLELGFQKFTLEDFHDQFMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLI  173 (267)
Q Consensus        99 ylE~ll~-----~~~~~~v~~~~~~L~~~g~~~~~~edF~~~f~~li~~i~~~~~~~~~L~~~fnd~~~s~yiV~~LR~l  173 (267)
                      |||+|+.     .+|++.+.+++..|..+||++++++||+++|+++|++|. ...+.++|++.|||++.|+|+|++||++
T Consensus       228 ylE~ll~~~~e~~r~~~~~~~~~~~l~~~g~~~~~~edf~~~f~~ll~~i~-~~~~~~~L~~~fnd~~~s~~iv~~lRll  306 (399)
T 4ddg_A          228 HLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVE-KQTSVADLLASFNDQSTSDYLVVYLRLL  306 (399)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhChHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHH-ccCCHHHHHHHHhcccchhhHHHHHHHH
Confidence            9999999     678888888999999999999999999999999999998 4578999999999999999999999999


Q ss_pred             HHHHHhcCHhhhhccccCCCCHHHHHhhhcccccccchHHHHHHHHHhcCCcEEEEEccCCCCCccceecCCCCCCCeEE
Q psy12903        174 ASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIH  253 (267)
Q Consensus       174 ts~~i~~n~d~f~pFi~~~~~~~~yC~~~Ve~~~~e~d~i~I~ALs~aL~v~I~V~~ld~~~~~~v~~~~f~e~~~p~I~  253 (267)
                      ||+||+.|+++|+||+++++++++||.++|+||++||||++|+|||++||++|+|+|+|++.|..++.|.||+++.|.|+
T Consensus       307 ts~~i~~~~d~f~pFi~~~~~v~~yc~~~ve~~~~e~d~l~I~ALa~al~v~I~V~yld~~~~~~v~~~~~~~~~~~~I~  386 (399)
T 4ddg_A          307 TSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVY  386 (399)
T ss_dssp             HHHHHHHTHHHHGGGSSSSCCHHHHHHHHTSSTTCCBCHHHHHHHHHHHTCCCEEEECSCCSSSCCCEEETTTTCCCCCE
T ss_pred             HHHHHHHCHHHHhcccCCCCCHHHHHHHhceeHHhhCcHHHHHHHHHHcCCcEEEEEcCCCCCCccceeeCCCCCCCEEE
Confidence            99999999999999999888999999999999999999999999999999999999999988899999999999999999


Q ss_pred             EEecCCCcccccc
Q psy12903        254 LLYRPGHYDILYP  266 (267)
Q Consensus       254 LLYrpGHYDILY~  266 (267)
                      |||||||||||||
T Consensus       387 LLYrPgHYDiLY~  399 (399)
T 4ddg_A          387 LLYRPGHYDILYK  399 (399)
T ss_dssp             EEEETBEEEEEEC
T ss_pred             EEEcCCccccCCC
Confidence            9999999999997

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11

Probab=100.00  E-value=1.4e-73  Score=509.52  Aligned_cols=225  Identities=36%  Similarity=0.726  Sum_probs=207.0

Q ss_pred             hhccC-CCcccccchHHHHHhccCChHHHHHHHHHHHhcccceeccCCCcchhHHHHHHHHHHHHh-----hHHHHHHHH
Q psy12903         41 ISDSI-MLVGDKEDIMVLEQQYIGDEVYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFALLESLYH-----LDFRLIAEK  114 (267)
Q Consensus        41 ~~~~~-plV~~~~~l~~L~~eY~~~~~~~~Ki~~L~~~y~~~R~vRGDGNCFYRAf~F~ylE~ll~-----~~~~~~v~~  114 (267)
                      |+++. ||||+++|+++|.+||++||+|++|+++|.++|+++|+||||||||||||+|+|||+|+.     .||++.+++
T Consensus         1 ~~~~~~plv~~~~~~~~l~~eY~~~~~~~~K~~~L~~~y~~~R~vRgDGNCFYRAf~f~ylE~ll~~~~e~~r~~~~~~~   80 (234)
T 1tff_A            1 MSETSFNLISEKCDILSILRDHPENRIYRRKIEELSKRFTAIRKTKGDRNCFYRALGYSYLESLLGKSREIFKFKERVLQ   80 (234)
T ss_dssp             ------CCBCCCBCTTHHHHSCSGGGGGHHHHHHHHHHEEEEECBCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCcCCcCCHHHHHHHhcCCHHHHHHHHHHHHhhhheeecCCCccHHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence            34567 999999999999999999999999999999999999999999999999999999999999     789999999


Q ss_pred             HHHHHHHcCCCcccHHHHHHHHHHHHHhhCCCCCCHHHHHHHhcccCcchHHHHHHHHHHHHHHhcCHhhhhccccCCCC
Q psy12903        115 SKDKLLELGFQKFTLEDFHDQFMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRT  194 (267)
Q Consensus       115 ~~~~L~~~g~~~~~~edF~~~f~~li~~i~~~~~~~~~L~~~fnd~~~s~yiV~~LR~lts~~i~~n~d~f~pFi~~~~~  194 (267)
                      +++.|..+||++++++||+++|+++|++|+ ++.+.+.|+++|||+..|+++|++||++||+||++|+|+|+||++++++
T Consensus        81 ~~~~l~~~g~~~~~~edF~~~f~~ll~~i~-~~~~~~~L~~~fnd~~~s~~iv~~lR~lta~~i~~~~d~f~pFi~~~~~  159 (234)
T 1tff_A           81 TPNDLLAAGFEEHKFRNFFNAFYSVVELVE-KDGSVSSLLKVFNDQSASDHIVQFLRLLTSAFIRNRADFFRHFIDEEMD  159 (234)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHHH-HTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHTHHHHGGGSCTTSC
T ss_pred             HHHHHHHcCCchHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHhcccchhhHHHHHHHHHHHHHHHCHHHHhhhhcCCCC
Confidence            999999999999999999999999999998 4459999999999999999999999999999999999999999998789


Q ss_pred             HHHHHhhhcccccccchHHHHHHHHHhcCCcEEEEEccCCCCCccceecCCCCCCCeEEEEecCCCccccccC
Q psy12903        195 VFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLLYRPGHYDILYPL  267 (267)
Q Consensus       195 ~~~yC~~~Ve~~~~e~d~i~I~ALs~aL~v~I~V~~ld~~~~~~v~~~~f~e~~~p~I~LLYrpGHYDILY~~  267 (267)
                      +++||.++|+||++||||++|+|||++|++||+|+|+|+++ ..++.|.||+++.|.|+|||||||||||||+
T Consensus       160 ~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~~~-~~~~~~~~~~~~~~~I~LlY~pgHYdily~~  231 (234)
T 1tff_A          160 IKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMD-TALNHHVFPEAATPSVYLLYKTSHYNILYAA  231 (234)
T ss_dssp             HHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC--------CCCCCCCSSCSEEEEEETTEEEEEEEC
T ss_pred             HHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEEEEcCCCC-CccccccCCCCCCCeEEEEECCCCceecccC
Confidence            99999999999999999999999999999999999999986 6788899999989999999999999999985

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A

Probab=99.91  E-value=2.4e-24  Score=189.17  Aligned_cols=92  Identities=24%  Similarity=0.237  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHhcCHhhhhccccCCCCHHHHHhhhcccccccchHHHHHHHHHhcCCcEEEEEccCCCCCccceecCCCC
Q psy12903        168 VYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPED  247 (267)
Q Consensus       168 ~~LR~lts~~i~~n~d~f~pFi~~~~~~~~yC~~~Ve~~~~e~d~i~I~ALs~aL~v~I~V~~ld~~~~~~v~~~~f~e~  247 (267)
                      ..||.+++.||++|+++|.+|+.+ .++++||.+ +..+++||||++|+|||++|+++|.|+..+..+     .+.|+++
T Consensus        47 ~~lR~~vv~yi~~n~d~f~e~~~~-~~~e~Y~~~-m~~~~~WGg~iEL~Als~~~~~~I~V~~~~~~~-----~~~~~~~  119 (212)
T 3by4_A           47 RDLREMVSKEVLNNPVKFNDAILD-KPNKDYAQW-ILKMESWGGAIEIGIISDALAVAIYVVDIDAVK-----IEKFNED  119 (212)
T ss_dssp             HHHHHHHHHHHHHCTTTTCHHHHT-SCHHHHHHH-TTSTTSCCCHHHHHHHHHHHTCEEEEEETTTTE-----EEEESTT
T ss_pred             HHHHHHHHHHHHHCHHHHhhhhcC-CCHHHHHHH-hcCCCEEccHHHHHHHHHHHCCCEEEEECCCCC-----eEEeCCC
Confidence            479999999999999999866655 699999986 888999999999999999999999999876432     3456555


Q ss_pred             -CCCeEEEEecCCCcccccc
Q psy12903        248 -KPPQIHLLYRPGHYDILYP  266 (267)
Q Consensus       248 -~~p~I~LLYrpGHYDILY~  266 (267)
                       ..+.|+|+|.++|||+||+
T Consensus       120 ~~~~~I~L~Y~g~HYdsl~~  139 (212)
T 3by4_A          120 KFDNYILILFNGIHYDSLTM  139 (212)
T ss_dssp             TCSEEEEEEECSSCEEEEEE
T ss_pred             CCCCeEEEEEcCCcceEEec
Confidence             3778999999999999985

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*

Probab=99.87  E-value=3.2e-22  Score=172.28  Aligned_cols=126  Identities=18%  Similarity=0.308  Sum_probs=84.0

Q ss_pred             HHHhcccceeccCCCcchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhCCCCCCHHHH
Q psy12903         74 LARKYSNLRRTRPDGNCFFRSFGFALLESLYHLDFRLIAEKSKDKLLELGFQKFTLEDFHDQFMEVVNLISKPETNEDTL  153 (267)
Q Consensus        74 L~~~y~~~R~vRGDGNCFYRAf~F~ylE~ll~~~~~~~v~~~~~~L~~~g~~~~~~edF~~~f~~li~~i~~~~~~~~~L  153 (267)
                      |.+....+|.|.|||||+|||++.                    +|.  |-++.                          
T Consensus        54 ~~~~gL~~~~I~~DGnCLFrAia~--------------------qL~--g~~~~--------------------------   85 (185)
T 3pfy_A           54 RDKKGFIIKQMKEDGACLFRAVAD--------------------QVY--GDQDM--------------------------   85 (185)
T ss_dssp             HHHHCCEEECCCCSTTHHHHHHHH--------------------HHH--SCGGG--------------------------
T ss_pred             HHHCCcEEEeeCCCCChHHHHHHH--------------------HHh--CCchH--------------------------
Confidence            356778899999999999999993                    332  11100                          


Q ss_pred             HHHhcccCcchHHHHHHHHHHHHHHhcCHhhhhccccCCCCHHHHHhhhcccccccchHHHHHHHHHhcCCcEEEEEccC
Q psy12903        154 VEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDR  233 (267)
Q Consensus       154 ~~~fnd~~~s~yiV~~LR~lts~~i~~n~d~f~pFi~~~~~~~~yC~~~Ve~~~~e~d~i~I~ALs~aL~v~I~V~~ld~  233 (267)
                                   -..||..++.||++|+++|.||+++  ++++||.+ +..+++|||+++|+|||++|+++|.|++.+.
T Consensus        86 -------------h~~LR~~vv~yi~~n~d~f~~Fv~~--~~e~Y~~~-m~~~~~WGg~iEL~AlS~~~~v~I~V~~~~~  149 (185)
T 3pfy_A           86 -------------HEVVRKHCMDYLMKNADYFSNYVTE--DFTTYINR-KRKNNCHGNHIEMQAMAEMYNRPVEVYQYST  149 (185)
T ss_dssp             -------------HHHHHHHHHHHHHHTHHHHTTCC--------------------CCHHHHHHHHHHHTSCEEEESSCS
T ss_pred             -------------HHHHHHHHHHHHHHHHHHHHHHHhc--cHHHHHHH-hhCCCccchHHHHHHHHHhhCCcEEEEECCC
Confidence                         1469999999999999999999975  79999985 7889999999999999999999999987764


Q ss_pred             CCCCcccee-cCCCCCCCeEEEEe-cCCCcccccc
Q psy12903        234 GDSTEAIAH-DFPEDKPPQIHLLY-RPGHYDILYP  266 (267)
Q Consensus       234 ~~~~~v~~~-~f~e~~~p~I~LLY-rpGHYDILY~  266 (267)
                      .+   ++.. .......+.|+|.| +.+|||.|+.
T Consensus       150 ~~---i~i~~g~~~~~~~~I~L~Y~~~~HYnSv~~  181 (185)
T 3pfy_A          150 EP---INTFHGIHQNEDEPIRVSYHRNIHYNSVVN  181 (185)
T ss_dssp             SC---SEEECTTSCCTTSCEEEEEETTTEEEEEEC
T ss_pred             CC---eEEecCccCCCCCEEEEEECCCCCcccccC
Confidence            32   3221 11123456799999 5679999975

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A

Probab=99.83  E-value=1.7e-20  Score=161.44  Aligned_cols=94  Identities=11%  Similarity=0.118  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHhcCHhhhhccccCCCCHHHHHhhhcccccccchHHHHHHHHHhcCCcEEEEEccCCCCCccceecCCC
Q psy12903        167 VVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPE  246 (267)
Q Consensus       167 V~~LR~lts~~i~~n~d~f~pFi~~~~~~~~yC~~~Ve~~~~e~d~i~I~ALs~aL~v~I~V~~ld~~~~~~v~~~~f~e  246 (267)
                      ...||..++.||++|++.   |.. +.++++||.+ +...++|||+++|+|||++|+++|.|+++|.+. .....+.|++
T Consensus        64 ~~~LR~~~~~yi~~~~~~---~~~-~~~~~~Y~~~-m~~~~~WGg~iEL~Als~~~~v~I~V~~~d~~~-~~~~i~~f~~  137 (185)
T 3phx_A           64 KRLTESAARKYYQEEPEA---RLV-GLSLEDYLKR-MLSDNEWGSTLEASMLAKEMGITIIIWTVAASD-EVEAGIKFGD  137 (185)
T ss_dssp             HHHHHHHHHHHGGGCTTH---HHH-CCCHHHHHHH-HTSTTCCCBHHHHHHHHHHHCCCEEEEEC--CC-BCCEEEEESS
T ss_pred             HHHHHHHHHHHHHhChHh---hhc-CCCHHHHHHH-hhCCCccCcHHHHHHHHHHHCCcEEEEEecCCC-CceEEEEcCC
Confidence            368999999999999998   333 3589999985 777999999999999999999999999888753 2233455655


Q ss_pred             C-CCCeEEEEecC-CCcccccc
Q psy12903        247 D-KPPQIHLLYRP-GHYDILYP  266 (267)
Q Consensus       247 ~-~~p~I~LLYrp-GHYDILY~  266 (267)
                      + ..+.|+|+|.. +|||.|.+
T Consensus       138 ~~~~~~I~L~Y~g~~HYdsl~~  159 (185)
T 3phx_A          138 GDVFTAVNLLHSGQTHFDALRI  159 (185)
T ss_dssp             CCTTTSEEEEEETTTEEEEEEE
T ss_pred             CCCCCEEEEEECCCcCchhceE
Confidence            4 36789999998 79999875

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}

Probab=99.82  E-value=2.5e-20  Score=164.17  Aligned_cols=94  Identities=10%  Similarity=0.103  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHhcCHhhhhccccCCCCHHHHHhhhcccccccchHHHHHHHHHhcCCcEEEEEccCCCCCccceecCCC
Q psy12903        167 VVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPE  246 (267)
Q Consensus       167 V~~LR~lts~~i~~n~d~f~pFi~~~~~~~~yC~~~Ve~~~~e~d~i~I~ALs~aL~v~I~V~~ld~~~~~~v~~~~f~e  246 (267)
                      ...||..++.||++|++.   |.. +.++++||.+ +...++|||+++|+|||++|+++|.|++++.+ |.....+.|.+
T Consensus        64 h~~LR~~va~yi~~n~d~---~~~-~~~feeY~~~-m~~~g~WGG~iEL~AlS~~~~v~I~V~~~d~~-g~~~~i~~fge  137 (219)
T 3phu_A           64 KRLTESAARKYYQEEPEA---RLV-GLSLEDYLKR-MLSDNEWGSTLEASMLAKEMGITIIIWTVAAS-DEVEAGIKFGD  137 (219)
T ss_dssp             HHHHHHHHHHHGGGCHHH---HHH-CCCHHHHHHH-HHSTTCCCCHHHHHHHHHHTTCCEEEEEESSS-SBEEEEEEESS
T ss_pred             HHHHHHHHHHHHHhChhh---hhc-CCCHHHHHHH-hcCCCccCCHHHHHHHHHHhCCCEEEEEecCC-CCceeEEEecC
Confidence            368999999999999998   333 3589999986 67789999999999999999999999988865 22334455654


Q ss_pred             C-CCCeEEEEecC-CCcccccc
Q psy12903        247 D-KPPQIHLLYRP-GHYDILYP  266 (267)
Q Consensus       247 ~-~~p~I~LLYrp-GHYDILY~  266 (267)
                      + ..+.|+|+|.. +|||.|.+
T Consensus       138 ~~~~~~I~L~Y~g~~HYdSL~~  159 (219)
T 3phu_A          138 GDVFTAVNLLHSGQTHFDALRI  159 (219)
T ss_dssp             CCTTTSEEEEEETTTEEEEEEE
T ss_pred             CCCCCeEEEEECCCcCchhheE
Confidence            4 36789999998 79999976

>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A

Probab=92.68  E-value=1.1  Score=41.86  Aligned_cols=56  Identities=23%  Similarity=0.235  Sum_probs=35.3

Q ss_pred             chHHHHHHHHHhcCCcEEEEEcc--C--CCCCccceecC---------CCC--CCCeEEEEecCCCccccc
Q psy12903        210 SDHIHIIALSTALDVGVRVRYMD--R--GDSTEAIAHDF---------PED--KPPQIHLLYRPGHYDILY  265 (267)
Q Consensus       210 ~d~i~I~ALs~aL~v~I~V~~ld--~--~~~~~v~~~~f---------~e~--~~p~I~LLYrpGHYDILY  265 (267)
                      -.+++|=+||++|..||.|+--.  +  +.|..+-...|         |..  -...|.|.|.-|||=.|-
T Consensus       211 LEeiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~C~rsPI~LgY~s~HFsaLV  281 (390)
T 3dkb_A          211 LEEIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYRYPIVLGYDSHHFVPLV  281 (390)
T ss_dssp             CCHHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTSSCSSCEEEEECSSCEEEEE
T ss_pred             HHHHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHHccCCceEEEeccCceeeee
Confidence            35899999999999999997311  2  22444433333         121  234599999999996653

>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}

Probab=90.50  E-value=1.1  Score=42.41  Aligned_cols=59  Identities=22%  Similarity=0.187  Sum_probs=38.1

Q ss_pred             cccccchHHHHHHHHHhcCCcEEEEEccCC----CCCccceecC-----C----C-C-CCCeEEEEecCCCcccc
Q psy12903        205 PMFKESDHIHIIALSTALDVGVRVRYMDRG----DSTEAIAHDF-----P----E-D-KPPQIHLLYRPGHYDIL  264 (267)
Q Consensus       205 ~~~~e~d~i~I~ALs~aL~v~I~V~~ld~~----~~~~v~~~~f-----~----e-~-~~p~I~LLYrpGHYDIL  264 (267)
                      |++.--.+++|=+||++|.-||.|+- +..    .|..+-...|     |    . . ..+.|.|.|.-|||=.|
T Consensus       273 ~Pg~sLEeiHIFvLAhVLRRPIIV~~-d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~rsPIvLgY~~gHFsaL  346 (454)
T 3zrh_A          273 QPGASLEQTHIFVLAHILRRPIIVYG-VKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWKSPIALGYTRGHFSAL  346 (454)
T ss_dssp             STTCCCCHHHHHHHHHHTTSCEEEEE-CSSCC-----CCCCCCCCEEECCTTSCGGGSCSCCEEEEEETTEEEEE
T ss_pred             CCcchHHHHHHHHHHHHhcCCeEEec-cccccccCCCcCCCcccceeeccCcCCHHHhcCCceEEEecccceeee
Confidence            45555569999999999999999963 321    1323222223     2    1 1 24569999999998655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	267
d1tffa_	228	d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB	1e-71

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  217 bits (554), Expect = 1e-71
 Identities = 80/225 (35%), Positives = 140/225 (62%), Gaps = 7/225 (3%)

Query: 47  LVGDKEDIMVLEQQYIGDEVYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFALLESLYHL 106
           L+ +K DI+ + + +  + +Y+ K+++L+++++ +R+T+ D NCF+R+ G++ LESL   
Sbjct: 2   LISEKCDILSILRDHPENRIYRRKIEELSKRFTAIRKTKGDRNCFYRALGYSYLESLLGK 61

Query: 107 D-----FRLIAEKSKDKLLELGFQKFTLEDFHDQFMEVVNLISKPETNEDTLVEVFNNKD 161
                 F+    ++ + LL  GF++    +F + F  VV L+ K + +  +L++VFN++ 
Sbjct: 62  SREIFKFKERVLQTPNDLLAAGFEEHKFRNFFNAFYSVVELVEK-DGSVSSLLKVFNDQS 120

Query: 162 YSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIALSTA 221
            SD++V +LRL+ S  ++  ADF+++FI+    + +FC  EVEPM  E DHI I ALS A
Sbjct: 121 ASDHIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQA 180

Query: 222 LDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLLYRPGHYDILYP 266
           L + ++V Y+D    T    H FPE   P ++LLY+  HY+ILY 
Sbjct: 181 LSIALQVEYVDEM-DTALNHHVFPEAATPSVYLLYKTSHYNILYA 224

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	267
d1tffa_	228	Ubiquitin thiolesterase protein OTUB2 (Otubain-2)	100.0

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-66  Score=458.43  Aligned_cols=219  Identities=37%  Similarity=0.738  Sum_probs=204.6

Q ss_pred             CcccccchHHHHHhccCChHHHHHHHHHHHhcccceeccCCCcchhHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHH
Q psy12903         47 LVGDKEDIMVLEQQYIGDEVYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFALLESLYH-----LDFRLIAEKSKDKLLE  121 (267)
Q Consensus        47 lV~~~~~l~~L~~eY~~~~~~~~Ki~~L~~~y~~~R~vRGDGNCFYRAf~F~ylE~ll~-----~~~~~~v~~~~~~L~~  121 (267)
                      |||+++|+++|.+||++|++|++|++.|.++|+++|+||||||||||||+|+|||.|+.     .++++.+.+++..+..
T Consensus         2 lv~~~~~~~~~~~ey~~~~~~~~k~~~L~~~y~~~R~vRgDGNCFYRaf~f~yle~Ll~~~~~~~~~~~~i~~~~~~l~~   81 (228)
T d1tffa_           2 LISEKCDILSILRDHPENRIYRRKIEELSKRFTAIRKTKGDRNCFYRALGYSYLESLLGKSREIFKFKERVLQTPNDLLA   81 (228)
T ss_dssp             CBCCCBCTTHHHHSCSGGGGGHHHHHHHHHHEEEEECBCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccccccHHHHHHHccCCHHHHHHHHHHHHhccceEeecCCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh
Confidence            89999999999999999999999999999999999999999999999999999999997     6788888889999999


Q ss_pred             cCCCcccHHHHHHHHHHHHHhhCCCCCCHHHHHHHhcccCcchHHHHHHHHHHHHHHhcCHhhhhccccCCCCHHHHHhh
Q psy12903        122 LGFQKFTLEDFHDQFMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQ  201 (267)
Q Consensus       122 ~g~~~~~~edF~~~f~~li~~i~~~~~~~~~L~~~fnd~~~s~yiV~~LR~lts~~i~~n~d~f~pFi~~~~~~~~yC~~  201 (267)
                      .||++++++||++.|+++++.+. .+.+.++|++.|||++.|+|+|++||++|+.||+.|++.|.||+++++++++||.+
T Consensus        82 ~~~~~~~~e~f~~~~~~li~~~~-~~~~~~~l~~~f~~~~~s~~iv~~lR~l~s~~i~~~~~~y~~Fi~~~~~~~~yc~~  160 (228)
T d1tffa_          82 AGFEEHKFRNFFNAFYSVVELVE-KDGSVSSLLKVFNDQSASDHIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTH  160 (228)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHH-HTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHH
T ss_pred             cCchHHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHcCccccchHHHHHHHHHHHHHHHCHHHHHhHhcCCccHHHHHHH
Confidence            99999999999999999999997 56789999999999999999999999999999999999999999988999999999


Q ss_pred             hcccccccchHHHHHHHHHhcCCcEEEEEccCCCCCccceecCCCCCCCeEEEEecCCCccccccC
Q psy12903        202 EVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLLYRPGHYDILYPL  267 (267)
Q Consensus       202 ~Ve~~~~e~d~i~I~ALs~aL~v~I~V~~ld~~~~~~v~~~~f~e~~~p~I~LLYrpGHYDILY~~  267 (267)
                      +|+||++||||++|+|||++|+++|+|+++|+++ ..++.+.+|++..|.|+|||+|||||||||+
T Consensus       161 ~v~~~~~e~d~ieI~aLa~al~v~I~V~~~d~~~-~~~~~~~~~~~~~~~I~Lly~pgHYdiLY~~  225 (228)
T d1tffa_         161 EVEPMATECDHIQITALSQALSIALQVEYVDEMD-TALNHHVFPEAATPSVYLLYKTSHYNILYAA  225 (228)
T ss_dssp             HTSSTTCCCCHHHHHHHHHHHTCCEEEEECC--------CCCCCCCSSCSEEEEEETTEEEEEEEC
T ss_pred             HHccccccCCcHHHHHHHHHhCCCEEEEEecCCC-CccccccCCCCCCCEEEEEeCCCCcccCccC
Confidence            9999999999999999999999999999999985 5778888999889999999999999999995