Psyllid ID: psy12956

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370
MRTVLSFWVELNYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFLERIITLLAYILRALYIRKLLRSGQDLSEDERNESLEEWKPSVYWVMLCLIVASIVIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVIKQFLNWLIYEMDMFCCRKPPDKTGRVLRRHSIRVQRERERRRRSSITLPKTIRRERNRPLGRICDVVPQADDDSNGFDENSDGARRLSGELISMKDLLTANKVSLAVMQKQLYETAQMQREGQAEPWSERRDGKFTPGTVGPLAIINYIVLQVSDIYNVLTFVASDIKNKLIPTRKYTTKQKEPKSSGV
ccccEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHcccccccccccccccccccccccc
ccccEEEEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHEEEEEEEEHHHccccHHHHcccccHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHcccccccccccccccccccEEccccccccccccccccccEEEEccccccccccccccccccccHHEcHHHHHHHcHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccccccccccccccccc
MRTVLSFWVELNykvgygstapqttpgKLFVIVYGFLGCSGGILFFNLFLERIITLLAYILRALYIRKLLRsgqdlsedernesleewkPSVYWVMLCLIVASIVIAGCASfvyvpyenwtYLESIYFCFvsfstigfgdyvsaqaidypnsslysFWNYIFLILGCSCIYSLFNVTSIVIKQFLNWLIYEMDmfccrkppdktgrvlrrHSIRVQRERERrrrssitlpktirrernrplgricdvvpqadddsngfdensdgarrLSGELISMKDLLTANKVSLAVMQKQLYETAQMQregqaepwserrdgkftpgtvgpLAIINYIVLQVSDIYNVLTFVASDiknkliptrkyttkqkepkssgv
MRTVLSFWVELNYKvgygstapqttpGKLFVIVYGFLGCSGGILFFNLFLERIITLLAYILRALYIRKLLrsgqdlsedernesleewkPSVYWVMLCLIVASIVIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVIKQFLNWLIYEMDMFCCRkppdktgrvlrrhsirvqrererrrrssitlpktirrernrplgricdvvpqadddsngfdensDGARRLSGELISMKDLLTANKVSLAVMQKQLYETAQMQregqaepwserrdgkftPGTVGPLAIINYIVLQVSDIYNVLTFVAsdiknkliptrkyttkqkepkssgv
MRTVLSFWVELNYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFLERIITLLAYILRALYIRKLLRSGQDLSEDERNESLEEWKPSVYWVMLCLIVASIVIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVIKQFLNWLIYEMDMFCCRKPPDKTGRVLrrhsirvqrererrrrssiTLPKTIRRERNRPLGRICDVVPQADDDSNGFDENSDGARRLSGELISMKDLLTANKVSLAVMQKQLYETAQMQREGQAEPWSERRDGKFTPGTVGPLAIINYIVLQVSDIYNVLTFVASDIKNKLIPTRKYTTKQKEPKSSGV
***VLSFWVELNYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFLERIITLLAYILRALYIRKLLR***************EWKPSVYWVMLCLIVASIVIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVIKQFLNWLIYEMDMFCCRK********************************************IC*****************************MKDLLTANKVSLAVMQK************************FTPGTVGPLAIINYIVLQVSDIYNVLTFVASDIKNKLIPT***************
MRTVLSFWVELNYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFLERIITLLAYILRALYIRKLLRSGQDLSEDERNESLEEWKPSVYWVMLCLIVASIVIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVIKQFLNWLIYEMDM**********************************************************************************************************************************AIINYIVLQVSDIYNVLTFVASDIKNKL******************
MRTVLSFWVELNYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFLERIITLLAYILRALYIRKLLRSGQ***********EEWKPSVYWVMLCLIVASIVIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVIKQFLNWLIYEMDMFCCRKPPDKTGRVLRRHSIR**********SSITLPKTIRRERNRPLGRICDVVPQADDDSNGFDENSDGARRLSGELISMKDLLTANKVSLAVMQKQLYETA**************RDGKFTPGTVGPLAIINYIVLQVSDIYNVLTFVASDIKNKLIPTRK*************
*RTVLSFWVELNYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFLERIITLLAYILRALYIRKLLRS************LEEWKPSVYWVMLCLIVASIVIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVIKQFLNWLIYEMDMFCCRKPPDKTGRVLR****RV************************************************GARRLSGELISMKDLLTANKVSLAVMQKQLYETAQMQRE***************PGTVGPLAIINYIVLQVSDIYNVLTFVASDIKNKLIPTRKYT***********
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
iiiiiHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooRRRRRRRRRRRRRRRRRRRRRRRoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRTVLSFWVELNYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFLERIITLLAYILRALYIRKLLRSGQDLSEDERNESLEEWKPSVYWVMLCLIVASIVIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVIKQFLNWLIYEMDMFCCRKPPDKTGRVLRRHSIRVQRERERRRRSSITLPKTIRRERNRPLGRICDVVPQADDDSNGFDENSDGARRLSGELISMKDLLTANKVSLAVMQKQLYETAQMQREGQAEPWSERRDGKFTPGTVGPLAIINYIVLQVSDIYNVLTFVASDIKNKLIPTRKYTTKQKEPKSSGV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query370 2.2.26 [Sep-21-2011]
Q9HB14408 Potassium channel subfami yes N/A 0.781 0.708 0.458 1e-71
Q9ERS1430 Potassium channel subfami yes N/A 0.781 0.672 0.445 7e-67
Q8R1P5405 Potassium channel subfami no N/A 0.772 0.706 0.431 3e-65
Q9ERS0405 Potassium channel subfami no N/A 0.770 0.703 0.429 6e-65
Q9HB15430 Potassium channel subfami no N/A 0.781 0.672 0.442 3e-64
O17185329 Two pore potassium channe no N/A 0.394 0.443 0.319 4e-17
O14649394 Potassium channel subfami no N/A 0.437 0.411 0.276 3e-14
O54912411 Potassium channel subfami no N/A 0.432 0.389 0.278 4e-14
O35111409 Potassium channel subfami no N/A 0.483 0.437 0.296 5e-14
Q63ZI0374 Potassium channel subfami N/A N/A 0.437 0.433 0.276 8e-13
>sp|Q9HB14|KCNKD_HUMAN Potassium channel subfamily K member 13 OS=Homo sapiens GN=KCNK13 PE=2 SV=2 Back     alignment and function desciption
 Score =  270 bits (691), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 150/327 (45%), Positives = 205/327 (62%), Gaps = 38/327 (11%)

Query: 15  VGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFLERIITLLAYILRALYIRKLLRSGQ 74
           +G+G T P T  GK+F+I YG +GCS  ILFFNLFLER+IT++AYI+++ + R+L R G 
Sbjct: 111 IGFGMTTPATVGGKIFLIFYGLVGCSSTILFFNLFLERLITIIAYIMKSCHQRQLRRRGA 170

Query: 75  DLSEDERN------ESLEEWKPSVYWVMLCLIVASIVIAGCASFVYVPYENWTYLESIYF 128
              E  ++      +SL  WKPSVY+VML L  ASI+I+ CAS +Y P E W+Y +S+YF
Sbjct: 171 LPQESLKDAGQCEVDSLAGWKPSVYYVMLILCTASILISCCASAMYTPIEGWSYFDSLYF 230

Query: 129 CFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVIKQFLNWL 188
           CFV+FSTIGFGD VS+Q   Y +  LY F N++F+++G  CIYSLFNV SI+IKQ LNW+
Sbjct: 231 CFVAFSTIGFGDLVSSQNAHYESQGLYRFANFVFILMGVCCIYSLFNVISILIKQSLNWI 290

Query: 189 IYEMDMFCCRKPPDKTGRVLRRHSIRVQRERERRRRSSITLPKTIRRERNRPLGRICDVV 248
           + +MD  CC +                QR   R RR ++ +P ++   RNR     C++ 
Sbjct: 291 LRKMDSGCCPQ---------------CQRGLLRSRR-NVVMPGSV---RNR-----CNIS 326

Query: 249 PQADDDSNGFDENSDGARRLSGELISMKDLLTANKVSLAVMQKQLYETAQMQREGQAEPW 308
            + D    G  E+    RRLSGE+ISMKDLL ANK SLA++QKQL E   M      +  
Sbjct: 327 IETD----GVAESDTDGRRLSGEMISMKDLLAANKASLAILQKQLSE---MANGCPHQTS 379

Query: 309 SERRDGKFTPGTVGPLAIINYIVLQVS 335
           +  RD +F+ G VG  AI+N  + + S
Sbjct: 380 TLARDNEFSGG-VGAFAIMNNRLAETS 405
Potassium channel displaying weak inward rectification in symmetrical K(+) solution.
Homo sapiens (taxid: 9606)
>sp|Q9ERS1|KCNKC_RAT Potassium channel subfamily K member 12 OS=Rattus norvegicus GN=Kcnk12 PE=2 SV=1 Back     alignment and function description
>sp|Q8R1P5|KCNKD_MOUSE Potassium channel subfamily K member 13 OS=Mus musculus GN=Kcnk13 PE=2 SV=1 Back     alignment and function description
>sp|Q9ERS0|KCNKD_RAT Potassium channel subfamily K member 13 OS=Rattus norvegicus GN=Kcnk13 PE=1 SV=1 Back     alignment and function description
>sp|Q9HB15|KCNKC_HUMAN Potassium channel subfamily K member 12 OS=Homo sapiens GN=KCNK12 PE=2 SV=1 Back     alignment and function description
>sp|O17185|SUP9_CAEEL Two pore potassium channel protein sup-9 OS=Caenorhabditis elegans GN=sup-9 PE=1 SV=2 Back     alignment and function description
>sp|O14649|KCNK3_HUMAN Potassium channel subfamily K member 3 OS=Homo sapiens GN=KCNK3 PE=1 SV=1 Back     alignment and function description
>sp|O54912|KCNK3_RAT Potassium channel subfamily K member 3 OS=Rattus norvegicus GN=Kcnk3 PE=2 SV=1 Back     alignment and function description
>sp|O35111|KCNK3_MOUSE Potassium channel subfamily K member 3 OS=Mus musculus GN=Kcnk3 PE=2 SV=2 Back     alignment and function description
>sp|Q63ZI0|KCNK9_XENLA Potassium channel subfamily K member 9 OS=Xenopus laevis GN=kcnk9 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query370
443726360406 hypothetical protein CAPTEDRAFT_146902 [ 0.756 0.689 0.490 1e-75
307201170427 Potassium channel subfamily K member 13 0.770 0.667 0.486 9e-74
345488208449 PREDICTED: potassium channel subfamily K 0.781 0.643 0.48 2e-73
326920934299 PREDICTED: potassium channel subfamily K 0.754 0.933 0.473 2e-73
325297023426 tandem pore domain potassium channel [Ap 0.8 0.694 0.482 5e-73
118092071407 PREDICTED: potassium channel subfamily K 0.772 0.702 0.463 5e-73
332030955426 Potassium channel subfamily K member 13 0.770 0.669 0.467 5e-72
449504467433 PREDICTED: potassium channel subfamily K 0.781 0.667 0.452 6e-72
149408610300 PREDICTED: potassium channel subfamily K 0.759 0.936 0.464 6e-72
344274120410 PREDICTED: potassium channel subfamily K 0.781 0.704 0.458 6e-72
>gi|443726360|gb|ELU13540.1| hypothetical protein CAPTEDRAFT_146902 [Capitella teleta] Back     alignment and taxonomy information
 Score =  289 bits (740), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 158/322 (49%), Positives = 205/322 (63%), Gaps = 42/322 (13%)

Query: 15  VGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFLERIITLLAYILRALYIRKLLRSG- 73
           +G+G T PQT PGK+ +I YG LGCSG ILFFNLFLERIIT LAYILR++Y  +L R G 
Sbjct: 111 IGFGMTTPQTIPGKIVLIFYGLLGCSGAILFFNLFLERIITFLAYILRSIYEMELRRKGL 170

Query: 74  -QDLSEDER------NESLEEWKPSVYWVMLCLIVASIVIAGCASFVYVPYENWTYLESI 126
             D S++ R      ++SL+ WKPSV  VM+ L++A+ ++A  AS +Y P E W++ ES 
Sbjct: 171 LADKSDERRGSNASEDDSLDSWKPSVGSVMVILLIAAAIVACLASAMYHPVEEWSFFESF 230

Query: 127 YFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVIKQFLN 186
           YFCFV+F+TIGFGDYV +Q  DY    +Y F N+IFL++GC C+YS+FNVTSIVIKQFLN
Sbjct: 231 YFCFVAFATIGFGDYVVSQRSDYNLVHIYRFGNFIFLLIGCCCVYSMFNVTSIVIKQFLN 290

Query: 187 WLIYEMDMFCCRKPPDKTGRVLRRHSIRVQRERERRRRSSITLPKTIRRERNRPLGRICD 246
           WLI ++D  CC KP                    R RR++IT     +  +  P   + D
Sbjct: 291 WLIKKLDCRCCYKPT------------------PRPRRNAITPGHMQKGHKGAP--ELTD 330

Query: 247 VVPQADDDSNGFDENSDGARRLSGELISMKDLLTANKVSLAVMQKQLYETAQMQREGQAE 306
           V    D D+        G+RR S E+ISM+D L+ANK+SLA+MQKQLYET+Q     +  
Sbjct: 331 VDSNYDSDA--------GSRRGSNEMISMRDFLSANKISLAMMQKQLYETSQ-----RGT 377

Query: 307 PWSERRDGKFTPGTVGPLAIIN 328
              E   G F  G VGPLAI+N
Sbjct: 378 FRGENSGGGFQ-GPVGPLAILN 398

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota
>gi|307201170|gb|EFN81076.1| Potassium channel subfamily K member 13 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|345488208|ref|XP_001605657.2| PREDICTED: potassium channel subfamily K member 13 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|326920934|ref|XP_003206721.1| PREDICTED: potassium channel subfamily K member 13-like [Meleagris gallopavo] Back     alignment and taxonomy information
>gi|325297023|ref|NP_001191517.1| tandem pore domain potassium channel [Aplysia californica] gi|24528452|gb|AAN62847.1| tandem pore domain potassium channel [Aplysia californica] Back     alignment and taxonomy information
>gi|118092071|ref|XP_001235376.1| PREDICTED: potassium channel subfamily K member 13 [Gallus gallus] Back     alignment and taxonomy information
>gi|332030955|gb|EGI70581.1| Potassium channel subfamily K member 13 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|449504467|ref|XP_002200125.2| PREDICTED: potassium channel subfamily K member 13 [Taeniopygia guttata] Back     alignment and taxonomy information
>gi|149408610|ref|XP_001506683.1| PREDICTED: potassium channel subfamily K member 13-like, partial [Ornithorhynchus anatinus] Back     alignment and taxonomy information
>gi|344274120|ref|XP_003408866.1| PREDICTED: potassium channel subfamily K member 13 [Loxodonta africana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query370
UNIPROTKB|E1C4F4407 KCNK13 "Uncharacterized protei 0.497 0.452 0.526 1.8e-68
UNIPROTKB|J9P407411 KCNK13 "Uncharacterized protei 0.518 0.467 0.505 4.2e-67
UNIPROTKB|Q9HB14408 KCNK13 "Potassium channel subf 0.494 0.448 0.544 6.8e-67
UNIPROTKB|F1SDA6410 KCNK13 "Uncharacterized protei 0.5 0.451 0.528 7.7e-66
UNIPROTKB|F1NV35429 KCNK12 "Uncharacterized protei 0.5 0.431 0.539 4.2e-65
ZFIN|ZDB-GENE-080219-46409 kcnk13a "potassium channel, su 0.491 0.444 0.531 3.7e-64
RGD|68940430 Kcnk12 "potassium channel, sub 0.5 0.430 0.523 1.8e-62
UNIPROTKB|E1BIA3430 KCNK12 "Uncharacterized protei 0.5 0.430 0.518 4.8e-62
UNIPROTKB|Q9HB15430 KCNK12 "Potassium channel subf 0.5 0.430 0.518 4.8e-62
MGI|MGI:2384976405 Kcnk13 "potassium channel, sub 0.510 0.466 0.502 2e-61
UNIPROTKB|E1C4F4 KCNK13 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 557 (201.1 bits), Expect = 1.8e-68, Sum P(2) = 1.8e-68
 Identities = 101/192 (52%), Positives = 140/192 (72%)

Query:    15 VGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFLERIITLLAYILRALYIRKLLRSGQ 74
             +G+G T P T  GK+F+I YG +GC+G ILFFNLFLER+IT++AY++++ + R+L R G 
Sbjct:   112 IGFGMTTPATVGGKIFLIFYGLIGCAGTILFFNLFLERLITVIAYVMKSCHERQLRRKGV 171

Query:    75 DLSEDERN-------ESLEEWKPSVYWVMLCLIVASIVIAGCASFVYVPYENWTYLESIY 127
              L  D R        +SL  WKPSVY+VML L +AS++I+ CAS +Y P E W+Y +S+Y
Sbjct:   172 -LPHDGRRGSGTSEADSLAGWKPSVYYVMLILCIASLIISCCASAMYTPIEGWSYFDSLY 230

Query:   128 FCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVIKQFLNW 187
             FCFV+FSTIGFGD VS+Q   Y +  LY F N++F+++G  CIYSLFNV SIVIKQ +NW
Sbjct:   231 FCFVAFSTIGFGDLVSSQNTHYESQGLYRFGNFVFILMGVCCIYSLFNVISIVIKQSINW 290

Query:   188 LIYEMDMFCCRK 199
             ++ ++D  CC +
Sbjct:   291 ILKKLDCRCCHR 302
GO:0005267 "potassium channel activity" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA
UNIPROTKB|J9P407 KCNK13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9HB14 KCNK13 "Potassium channel subfamily K member 13" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SDA6 KCNK13 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1NV35 KCNK12 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-080219-46 kcnk13a "potassium channel, subfamily K, member 13a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|68940 Kcnk12 "potassium channel, subfamily K, member 12" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1BIA3 KCNK12 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9HB15 KCNK12 "Potassium channel subfamily K member 12" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2384976 Kcnk13 "potassium channel, subfamily K, member 13" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9HB14KCNKD_HUMANNo assigned EC number0.45870.78100.7083yesN/A
Q9ERS1KCNKC_RATNo assigned EC number0.44540.78100.6720yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query370
pfam0788574 pfam07885, Ion_trans_2, Ion channel 8e-08
pfam0788574 pfam07885, Ion_trans_2, Ion channel 2e-04
>gnl|CDD|219619 pfam07885, Ion_trans_2, Ion channel Back     alignment and domain information 
 Score = 48.7 bits (117), Expect = 8e-08
 Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 9/79 (11%)

Query: 100 IVASIVIAGCASFVYVPYEN--WTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSF 157
           I+  +V+     +  +  E   W +L+++YF FV+ +TIG+GD V       P +     
Sbjct: 1   ILLLLVLIFGTVYYSLEEEGWGWDFLDALYFSFVTLTTIGYGDIV-------PLTDAGRL 53

Query: 158 WNYIFLILGCSCIYSLFNV 176
           +  I++++G         V
Sbjct: 54  FTIIYILIGIPLFLLFLAV 72

This family includes the two membrane helix type ion channels found in bacteria. Length = 74
>gnl|CDD|219619 pfam07885, Ion_trans_2, Ion channel Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 370
KOG4404|consensus350 100.0
KOG1418|consensus433 99.96
PF0788579 Ion_trans_2: Ion channel; InterPro: IPR013099 This 99.52
KOG4404|consensus350 99.29
KOG3713|consensus477 99.18
KOG1418|consensus433 99.15
PRK10537393 voltage-gated potassium channel; Provisional 99.12
PF0788579 Ion_trans_2: Ion channel; InterPro: IPR013099 This 98.95
KOG1545|consensus507 98.84
KOG1419|consensus 654 98.66
PLN03192 823 Voltage-dependent potassium channel; Provisional 98.42
KOG4390|consensus632 98.39
KOG1420|consensus 1103 98.29
KOG3713|consensus477 98.22
KOG1419|consensus654 98.05
KOG3684|consensus489 98.02
PLN03192 823 Voltage-dependent potassium channel; Provisional 97.93
PRK10537393 voltage-gated potassium channel; Provisional 97.92
KOG1545|consensus507 97.73
KOG0498|consensus 727 97.44
KOG3193|consensus 1087 97.25
KOG1420|consensus 1103 97.24
KOG0498|consensus727 97.22
KOG0501|consensus 971 97.12
PF01007336 IRK: Inward rectifier potassium channel; InterPro: 97.02
KOG4390|consensus632 96.89
KOG0501|consensus 971 96.46
KOG3684|consensus489 95.14
KOG3827|consensus400 94.7
PF01007336 IRK: Inward rectifier potassium channel; InterPro: 94.5
PF00520200 Ion_trans: Ion transport protein calcium channel s 93.89
KOG3193|consensus 1087 86.97
>KOG4404|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.8e-57  Score=439.03  Aligned_cols=267  Identities=30%  Similarity=0.522  Sum_probs=234.7

Q ss_pred             eeeEEEEee-eeceecCCCccCCccchhhHhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchh
Q psy12956          3 TVLSFWVEL-NYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFLERIITLLAYILRALYIRKLLRSGQDLSEDER   81 (370)
Q Consensus         3 t~a~yf~~T-iTTIGYGdiaP~T~~GKlf~I~YaLiGIPl~il~~~l~l~~i~~~l~~i~r~~~~r~lrr~g~~~~~~~e   81 (370)
                      +.|+||++| +||||||+.+|.|++||+|||+||++|||+++++|++++||+.++++++++++++++.||          
T Consensus        82 ~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gERlnt~~ayil~~~r~~~~~r----------  151 (350)
T KOG4404|consen   82 AGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGERLNTFVAYILRRCRRRLGRR----------  151 (350)
T ss_pred             CcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------
Confidence            568999999 999999999999999999999999999999999999999999999999999998876543          


Q ss_pred             hhccccccchhHHHHHHHHHHHHHHHHhhhhhhccccCCCcccceeeeeEEeeccccccccccCC-CCCCCCcchhhHHH
Q psy12956         82 NESLEEWKPSVYWVMLCLIVASIVIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSAQA-IDYPNSSLYSFWNY  160 (370)
Q Consensus        82 ~~~l~~wk~sv~~v~Lil~i~~~v~l~~gA~if~~~E~Wsf~dslYF~fvTlTTIGfGDivP~t~-~g~~~~~~yrv~~~  160 (370)
                           .|+++++.++++++...++++|+||++|+..|+|+|+||+||||||+|||||||+|+.++ ..++.+++|+++++
T Consensus       152 -----~~~~S~~~l~~i~~~~~~~~i~~gaa~fs~~E~Wsyfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf  226 (350)
T KOG4404|consen  152 -----RWDVSVYNLVLILFTACILLICCGAAMFSSVEGWSYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSF  226 (350)
T ss_pred             -----cCCCcHHHHHHHHHHHHHHHHHhhHHHhhcccCcchhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhH
Confidence                 388999999999999989999999999999999999999999999999999999999987 67889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccccccccccccccccccccccccccccccCCC
Q psy12956        161 IFLILGCSCIYSLFNVTSIVIKQFLNWLIYEMDMFCCRKPPDKTGRVLRRHSIRVQRERERRRRSSITLPKTIRRERNRP  240 (370)
Q Consensus       161 i~il~Gl~l~~~~~~vi~~~i~~~l~~l~~k~~~~cc~~~~~~~~~~~rr~~v~v~gp~~~~~~~~~~~~~~~~~~~~~~  240 (370)
                      +||++|+++++.++|++...+.+..+|..+|.+..||..|.         ++..+.+|..+++              ++.
T Consensus       227 ~fIL~Gl~vi~a~~NllvLrf~t~~~~~~rr~~~~~~~~~~---------~~~~~~~~~~~~~--------------~~~  283 (350)
T KOG4404|consen  227 VFILLGLCVIYALLNLLVLRFMTMNAEDERRDEQEACSAAQ---------NARGLGGGDSPRR--------------NNA  283 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhHHHhc---------ccccCCCCCCCCc--------------Ccc
Confidence            99999999999999999999999999999999998887651         1100011111110              010


Q ss_pred             CCCcccCCCCCCCCCCCCCCCCccccccccchhhHHHHHHhccchhhhcccchHHHHhhhcCCCCCCCCCCCCCCCCCCC
Q psy12956        241 LGRICDVVPQADDDSNGFDENSDGARRLSGELISMKDLLTANKVSLAVMQKQLYETAQMQREGQAEPWSERRDGKFTPGT  320 (370)
Q Consensus       241 ~~~~~~~~~~~~~e~~~~~~s~~~~r~~~~e~~s~~~~la~~k~~l~~~q~q~~e~a~~~~~~p~~~~~~~~~~~~s~~~  320 (370)
                                        ..|...+|+.+    +|+|..++++.++...|+|+.|..+   +||.. +.++++++++ +|
T Consensus       284 ------------------~~s~~~~~~~~----~~~~~~~~~~~s~~~~~~~~~~~~~---~~~~~-~~~~~~~g~~-~~  336 (350)
T KOG4404|consen  284 ------------------AASFGCGRRRS----SMRDSVTSSLASCHLRQKQLSECLN---GTPPC-CISSRSPGFH-GG  336 (350)
T ss_pred             ------------------ccccccccCCc----cccccccccceeeeeeccccccccc---CCCCc-ccccCCCCCC-CC
Confidence                              02555566666    9999999999999999999999999   99999 9999999999 99


Q ss_pred             cchhhhhhhhhhhh
Q psy12956        321 VGPLAIINYIVLQV  334 (370)
Q Consensus       321 vg~~~~~~~~~~~~  334 (370)
                      ++++++||+|.++|
T Consensus       337 ~~~~~~m~~r~~~~  350 (350)
T KOG4404|consen  337 VGALRIMNIRLSVT  350 (350)
T ss_pred             ccccchhcccccCC
Confidence            99999999999875

>KOG1418|consensus Back     alignment and domain information
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] Back     alignment and domain information
>KOG4404|consensus Back     alignment and domain information
>KOG3713|consensus Back     alignment and domain information
>KOG1418|consensus Back     alignment and domain information
>PRK10537 voltage-gated potassium channel; Provisional Back     alignment and domain information
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] Back     alignment and domain information
>KOG1545|consensus Back     alignment and domain information
>KOG1419|consensus Back     alignment and domain information
>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>KOG4390|consensus Back     alignment and domain information
>KOG1420|consensus Back     alignment and domain information
>KOG3713|consensus Back     alignment and domain information
>KOG1419|consensus Back     alignment and domain information
>KOG3684|consensus Back     alignment and domain information
>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>PRK10537 voltage-gated potassium channel; Provisional Back     alignment and domain information
>KOG1545|consensus Back     alignment and domain information
>KOG0498|consensus Back     alignment and domain information
>KOG3193|consensus Back     alignment and domain information
>KOG1420|consensus Back     alignment and domain information
>KOG0498|consensus Back     alignment and domain information
>KOG0501|consensus Back     alignment and domain information
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG4390|consensus Back     alignment and domain information
>KOG0501|consensus Back     alignment and domain information
>KOG3684|consensus Back     alignment and domain information
>KOG3827|consensus Back     alignment and domain information
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins Back     alignment and domain information
>KOG3193|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query370
3ukm_A280 Crystal Structure Of The Human Two Pore Domain Pota 2e-11
3um7_A309 Crystal Structure Of The Human Two Pore Domain K+ I 2e-09
3rbz_A340 Mthk Channel, Ca2+-Bound Length = 340 6e-06
1lnq_A336 Crystal Structure Of Mthk At 3.3 A Length = 336 6e-06
4hyo_A91 Crystal Structure Of Mthk Pore Length = 91 1e-04
3r65_A82 Mthk Channel Pore E92q Mutant Length = 82 1e-04
3ldc_A82 High Resolution Open Mthk Pore Structure Crystalliz 2e-04
3ldd_A82 High Resolution Open Mthk Pore Structure Crystalliz 3e-04
3ous_A82 Mthk Channel Pore T59a Mutant Length = 82 5e-04
>pdb|3UKM|A Chain A, Crystal Structure Of The Human Two Pore Domain Potassium Ion Channel K2p1 (Twik-1) Length = 280 Back     alignment and structure 
Iteration: 1

 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 70/151 (46%), Gaps = 13/151 (8%)
Query: 16  GYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFLERIITLLAYILRALYIRKLLRSGQD 75
           GYG T P +  GK F I+Y  +G    +LF    ++RI     ++ R   +   +R G  
Sbjct: 109 GYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITV---HVTRRPVLYFHIRWGFS 165
Query: 76  LSEDERNESLEEWKPSVYWVMLCLIVASIVIAGCASFVYVPYENWTYLESIYFCFVSFST 135
                     ++    V+ V+L  +  S      A+   V  ++W +LES YFCF+S ST
Sbjct: 166 ----------KQVVAIVHAVLLGFVTVSCFFFIPAAVFSVLEDDWNFLESFYFCFISLST 215
Query: 136 IGFGDYVSAQAIDYPNSSLYSFWNYIFLILG 166
           IG GDYV  +  +     LY      +L+LG
Sbjct: 216 IGLGDYVPGEGYNQKFRELYKIGITCYLLLG 246
>pdb|3UM7|A Chain A, Crystal Structure Of The Human Two Pore Domain K+ Ion Channel Traak (K2p4.1) Length = 309 Back     alignment and structure
>pdb|3RBZ|A Chain A, Mthk Channel, Ca2+-Bound Length = 340 Back     alignment and structure
>pdb|1LNQ|A Chain A, Crystal Structure Of Mthk At 3.3 A Length = 336 Back     alignment and structure
>pdb|4HYO|A Chain A, Crystal Structure Of Mthk Pore Length = 91 Back     alignment and structure
>pdb|3R65|A Chain A, Mthk Channel Pore E92q Mutant Length = 82 Back     alignment and structure
>pdb|3LDC|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In 100 Mm K+ Length = 82 Back     alignment and structure
>pdb|3LDD|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In 100 Mm K+ And Further Soaked In 99 Mm Na+1 MM K+ Length = 82 Back     alignment and structure
>pdb|3OUS|A Chain A, Mthk Channel Pore T59a Mutant Length = 82 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query370
3um7_A309 Potassium channel subfamily K member 4; potassium 1e-23
3ukm_A280 Potassium channel subfamily K member 1; membrane p 1e-23
2q67_A114 Potassium channel protein; inverted teepee, helix 7e-10
3ouf_A97 Potassium channel protein; ION channel, membrane, 9e-10
3ldc_A82 Calcium-gated potassium channel MTHK; transmembran 1e-09
3vou_A148 ION transport 2 domain protein, voltage-gated SOD 4e-08
1lnq_A336 MTHK channels, potassium channel related protein; 6e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Length = 309 Back     alignment and structure
 Score = 98.8 bits (245), Expect = 1e-23
 Identities = 44/195 (22%), Positives = 77/195 (39%), Gaps = 13/195 (6%)

Query: 5   LSFWVELNYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFLERIITLLAYILRAL 64
             F   +   +GYG+ A +T  G+LF I Y  +G    I  F + L  +   L   LR  
Sbjct: 120 FFFSGTIITTIGYGNVALRTDAGRLFCIFYALVG----IPLFGILLAGVGDRLGSSLRHG 175

Query: 65  YIRKLLRSGQDLSEDERNESLEEWKPSVYWVMLCLIVASIVIAGCASFVYVPYENWTYLE 124
                               +      V   ML L++  ++     +FV+   E+W+ LE
Sbjct: 176 IGHIEAI--------FLKWHVPPELVRVLSAMLFLLIGCLLFVLTPTFVFCYMEDWSKLE 227

Query: 125 SIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVIKQF 184
           +IYF  V+ +T+GFGDYV+       + +      + +++LG +   S+       ++  
Sbjct: 228 AIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPL-VWFWILLGLAYFASVLTTIGNWLRVV 286

Query: 185 LNWLIYEMDMFCCRK 199
                 EM     + 
Sbjct: 287 SRRTRAEMGGLTAQS 301
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Length = 280 Back     alignment and structure
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Length = 114 Back     alignment and structure
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Length = 97 Back     alignment and structure
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 3r65_A 3ous_A 3ldd_A Length = 82 Back     alignment and structure
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Length = 148 Back     alignment and structure
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Length = 336 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query370
3um7_A309 Potassium channel subfamily K member 4; potassium 99.97
3ukm_A280 Potassium channel subfamily K member 1; membrane p 99.97
3ouf_A97 Potassium channel protein; ION channel, membrane, 99.62
3ldc_A82 Calcium-gated potassium channel MTHK; transmembran 99.62
2q67_A114 Potassium channel protein; inverted teepee, helix 99.6
3eff_K139 Voltage-gated potassium channel; FULL length KCSA, 99.59
2k1e_A103 Water soluble analogue of potassium channel, KCSA; 99.56
3vou_A148 ION transport 2 domain protein, voltage-gated SOD 99.56
2ih3_C122 Voltage-gated potassium channel; ION channel D-ami 99.51
4h33_A137 LMO2059 protein; bilayers, KVLM, lipidic cubic pha 99.5
2a9h_A155 Voltage-gated potassium channel; potassium channel 99.46
3pjs_K166 KCSA, voltage-gated potassium channel; ION channel 99.44
3um7_A309 Potassium channel subfamily K member 4; potassium 99.38
1orq_C223 Potassium channel; voltage-dependent, KVAP, FAB co 99.27
3ukm_A280 Potassium channel subfamily K member 1; membrane p 99.27
4gx0_A 565 TRKA domain protein; membrane protein, ION channel 99.24
1lnq_A336 MTHK channels, potassium channel related protein; 99.22
1xl4_A301 Inward rectifier potassium channel; integral membr 99.09
3beh_A355 MLL3241 protein; transmembrane protein, membrane p 99.08
1p7b_A333 Integral membrane channel and cytosolic domains; t 99.07
2qks_A321 KIR3.1-prokaryotic KIR channel chimera; G-protein 99.0
3eff_K139 Voltage-gated potassium channel; FULL length KCSA, 98.92
3ldc_A82 Calcium-gated potassium channel MTHK; transmembran 98.91
2r9r_B514 Paddle chimera voltage gated potassium channel KV; 98.88
3ouf_A97 Potassium channel protein; ION channel, membrane, 98.87
2k1e_A103 Water soluble analogue of potassium channel, KCSA; 98.82
2q67_A114 Potassium channel protein; inverted teepee, helix 98.81
4h33_A137 LMO2059 protein; bilayers, KVLM, lipidic cubic pha 98.79
3vou_A148 ION transport 2 domain protein, voltage-gated SOD 98.77
2ih3_C122 Voltage-gated potassium channel; ION channel D-ami 98.77
3pjs_K166 KCSA, voltage-gated potassium channel; ION channel 98.73
2a9h_A155 Voltage-gated potassium channel; potassium channel 98.72
3sya_A340 G protein-activated inward rectifier potassium CH; 98.52
3spc_A343 Inward-rectifier K+ channel KIR2.2; PIP, membrane 98.42
1xl4_A301 Inward rectifier potassium channel; integral membr 98.27
1lnq_A336 MTHK channels, potassium channel related protein; 98.24
1p7b_A333 Integral membrane channel and cytosolic domains; t 98.24
2qks_A321 KIR3.1-prokaryotic KIR channel chimera; G-protein 98.22
4gx0_A 565 TRKA domain protein; membrane protein, ION channel 98.06
3beh_A355 MLL3241 protein; transmembrane protein, membrane p 98.04
3rvy_A285 ION transport protein; tetrameric ION channel, vol 97.77
2r9r_B514 Paddle chimera voltage gated potassium channel KV; 97.7
3sya_A340 G protein-activated inward rectifier potassium CH; 97.63
3spc_A343 Inward-rectifier K+ channel KIR2.2; PIP, membrane 97.28
3rvy_A285 ION transport protein; tetrameric ION channel, vol 91.28
4dxw_A229 Navrh, ION transport protein; tetrameric, voltage- 87.26
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
Probab=99.97  E-value=5.9e-32  Score=263.66  Aligned_cols=165  Identities=25%  Similarity=0.419  Sum_probs=127.7

Q ss_pred             eeEEEEee-eeceecCCCccCCccchhhHhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchhh
Q psy12956          4 VLSFWVEL-NYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFLERIITLLAYILRALYIRKLLRSGQDLSEDERN   82 (370)
Q Consensus         4 ~a~yf~~T-iTTIGYGdiaP~T~~GKlf~I~YaLiGIPl~il~~~l~l~~i~~~l~~i~r~~~~r~lrr~g~~~~~~~e~   82 (370)
                      .++||+.+ +|||||||++|.|..||+|+++|+++|||++.++++.+.+.+.+.+....++... .+++.+..    .  
T Consensus       118 ~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~~~~~i~~le~-~~~~~~~~----~--  190 (309)
T 3um7_A          118 SAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSSLRHGIGHIEA-IFLKWHVP----P--  190 (309)
T ss_dssp             HHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH-HHTTTC------C--
T ss_pred             hhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHhccccc----h--
Confidence            47899999 9999999999999999999999999999999888887777766655443333222 12211100    0  


Q ss_pred             hccccccchhHHHHHHHHHHHHHHHHhhhhhhccccCCCcccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHH
Q psy12956         83 ESLEEWKPSVYWVMLCLIVASIVIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIF  162 (370)
Q Consensus        83 ~~l~~wk~sv~~v~Lil~i~~~v~l~~gA~if~~~E~Wsf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~  162 (370)
                       .    .......++++++++++++++++++|+..|+|+|+||+|||++|+|||||||++|.++.|+. ++.|++++++|
T Consensus       191 -~----~~~~~~~~l~~~~~~~~~l~~ga~~~~~~E~~~~~da~y~~~vTltTvGyGd~~p~t~~g~~-~~~y~~~~~~~  264 (309)
T 3um7_A          191 -E----LVRVLSAMLFLLIGCLLFVLTPTFVFCYMEDWSKLEAIYFVIVTLTTVGFGDYVAGADPRQD-SPAYQPLVWFW  264 (309)
T ss_dssp             -C----HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCHHHHHHHHHHHHTTCCCSSCCTTCCTTCC-CSTHHHHHHHH
T ss_pred             -h----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhheeccccCCCCCCCccccc-cchHHHHHHHH
Confidence             0    00111223344455556778899999999999999999999999999999999999998854 56899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy12956        163 LILGCSCIYSLFNVTSIVI  181 (370)
Q Consensus       163 il~Gl~l~~~~~~vi~~~i  181 (370)
                      +++|+++++++++.++..+
T Consensus       265 il~Gl~~~a~~~~~i~~~~  283 (309)
T 3um7_A          265 ILLGLAYFASVLTTIGNWL  283 (309)
T ss_dssp             HHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999998766655
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Back     alignment and structure
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A Back     alignment and structure
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Back     alignment and structure
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Back     alignment and structure
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Back     alignment and structure
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Back     alignment and structure
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Back     alignment and structure
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A Back     alignment and structure
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Back     alignment and structure
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Back     alignment and structure
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* Back     alignment and structure
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Back     alignment and structure
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Back     alignment and structure
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Back     alignment and structure
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A Back     alignment and structure
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Back     alignment and structure
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Back     alignment and structure
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Back     alignment and structure
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Back     alignment and structure
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A Back     alignment and structure
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Back     alignment and structure
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Back     alignment and structure
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Back     alignment and structure
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Back     alignment and structure
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Back     alignment and structure
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Back     alignment and structure
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Back     alignment and structure
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* Back     alignment and structure
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Back     alignment and structure
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* Back     alignment and structure
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Back     alignment and structure
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Back     alignment and structure
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Back     alignment and structure
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* Back     alignment and structure
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 370
d1lnqa280 f.14.1.1 (A:19-98) Potassium channel-related prote 2e-09
d1lnqa280 f.14.1.1 (A:19-98) Potassium channel-related prote 0.002
d1p7ba2116 f.14.1.1 (A:36-151) Inward rectifier potassium cha 7e-05
d1xl4a2116 f.14.1.1 (A:23-138) Inward rectifier potassium cha 2e-04
d1orsc_132 f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aer 0.002
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

 Score = 51.2 bits (123), Expect = 2e-09
 Identities = 20/83 (24%), Positives = 44/83 (53%), Gaps = 10/83 (12%)

Query: 99  LIVASIVIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFW 158
           L+V +++I G A F ++  E  ++  S+Y+ FV+ +T+G+GDY        P++ L  ++
Sbjct: 7   LLVLAVIIYGTAGFHFI--EGESWTVSLYWTFVTIATVGYGDY-------SPSTPLGMYF 57

Query: 159 NYIFLILGCSCI-YSLFNVTSIV 180
               ++LG      ++  +   +
Sbjct: 58  TVTLIVLGIGTFAVAVERLLEFL 80
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80 Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Length = 116 Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 116 Back     information, alignment and structure
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 132 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query370
d1lnqa280 Potassium channel-related protein MthK {Archaeon M 99.53
d1r3jc_103 Potassium channel protein {Streptomyces coelicolor 99.44
d1p7ba2116 Inward rectifier potassium channel Kirbac1.1 {Burk 99.29
d1xl4a2116 Inward rectifier potassium channel kirbac3.1 {Magn 99.22
d1r3jc_103 Potassium channel protein {Streptomyces coelicolor 98.88
d1lnqa280 Potassium channel-related protein MthK {Archaeon M 98.79
d1p7ba2116 Inward rectifier potassium channel Kirbac1.1 {Burk 98.58
d1xl4a2116 Inward rectifier potassium channel kirbac3.1 {Magn 98.58
d2h8pc157 Potassium channel protein {Streptomyces coelicolor 97.2
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=99.53  E-value=2.8e-17  Score=128.20  Aligned_cols=68  Identities=18%  Similarity=0.381  Sum_probs=61.5

Q ss_pred             HHHHhhhhhhccccCCCcccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy12956        105 VIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSI  179 (370)
Q Consensus       105 v~l~~gA~if~~~E~Wsf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~il~Gl~l~~~~~~vi~~  179 (370)
                      .+++.++.+|+..|+|++.||+||+++|+|||||||++|.+..+       |+++++++++|+.+++.+++.+++
T Consensus        11 ~~~~~g~~~~~~~e~~s~~dalyf~~~T~tTiGyGD~~P~t~~~-------r~~~~~~~l~g~~~~~~~i~~i~~   78 (80)
T d1lnqa2          11 AVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLG-------MYFTVTLIVLGIGTFAVAVERLLE   78 (80)
T ss_dssp             TSHHHHTTTTTTSSSCCSSTTHHHHHHHHTTCCCSSCCCCCSSH-------HHHHTHHHHTTSTTTTTHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHhhheeeccCCCCCCCCcch-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567899999999999999999999999999999999999877       999999999999999988877654
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Back     information, alignment and structure
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Back     information, alignment and structure
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure