Diaphorina citri psyllid: psy12966


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-
MRICPVCPTYNSSEYGDKKRCFQPSLNADDNLEQCPEEYVFNPANVFSVLDNRHLAKASKYHHSQHSSSSSSSSSSGSFSSGGSASGHSEAVQISPQHVSLKLRINEAYRMVVDYAQAEDYPVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHNVMSLSQDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVTAEQIGVYERLKTHIEGSSSGTLTNDSSNVVDLVKDQYNKISSSVEMKDTSSSAVKVTYHSKCLNKDGPSKPTAKCDGLKVGTVVHFEIDIEVTACPANRSEWMQTFYIYPVGIDETLRVDLEMQCECPCEVDGHPSFVRNSPNCSGFGTFKCGLCECDQSHFGRRCECDAESSQGITSTGCKADANSTMECSGRGNCLCNQKSLDNIVNVIISHVIVTTECCVLDLNTVGACVASAIVKTAGLVQRVTVAPLMTPVYLLREERCARARESVSAVCANVLKIAREDIPAGSARNARPVLEDVQEFKNCIQCQVLQDRTIVRGGNEAKDENLCVYFDEDECKFEYVYWYDAQGKIHLRAQQERECPPHVYILGLVLGVIGAIVLIGLAFLCLWKILTSIHDRREFAKFEKERMLAKWDTKLNSLIY
cccccccccccccccccccccccHHccccccccccccccCCccccccCCcccHHHHcccccccccccccccccccccccccccccccccccEEEcccEEEEEEEccccEEEEEEEEcccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEcccccccccccccccccccccccCEEEEccccccHHHHHHHcccccccccccccccccccEEEEEEEccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccEEEEEEcccHHHHHHHHccccccCEEEccccccccHHHHHccccccEEEEEEEEcccccccEEEEEEcccccccccccccccccEEccEEEEEEEEEEEcccccccccccEEEEEEccccccEEEcccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccEEEcccEEEcccccEEEccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCECcccccccccccccECcccccEEEEEEEEccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
MRICPVCPTYNSSEYGDKKRCFQPSLNADDNLEQCPEEYVFNPANVFSVLDNRHLAKAS*************************************QHVSLKLRINEAYRMVVDYAQAEDYPVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHNVMSLSQDTSRFSA**KGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVTAEQIGVYERLKTHIEGSSSGTLTNDSSNVVDLVKDQYNKISSSVEMKDTSSSAVKVTYHSKCLNKDGPSKPTAKCDGLKVGTVVHFEIDIEVTACPANRSEWMQTFYIYPVGIDETLRVDLEMQCECPCEVDGHPSFVRNSPNCSGFGTFKCGLCECDQSHFGRRCEC********************MECSGRGNCLCNQKSLDNIVNVIISHVIVTTECCVLDLNTVGACVASAIVKTAGLVQRVTVAPLMTPVYLLREERCARARESVSAVCANVLKIAREDIPAGSARNARPVLEDVQEFKNCIQCQVLQDRTIVRGGNEAKDENLCVYFDEDECKFEYVYWYDAQGKIHLRAQQERECPPHVYILGLVLGVIGAIVLIGLAFLCLWKILTSIHDRREFAKFEKERMLAKWDTKLNSLI*
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MRICPVCPTYNSSEYGDKKRCFQPSLNADDNLEQCPEEYVFNPANVFSVLDNRHLAKASKYHHSQHSSSSSSSSSSGSFSSGGSASGHSEAVQISPQHVSLKLRINEAYRMVVDYAQAEDYPVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHNVMSLSQDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVTAEQIGVYERLKTHIEGSSSGTLTNDSSNVVDLVKDQYNKISSSVEMKDTSSSAVKVTYHSKCLNKDGPSKPTAKCDGLKVGTVVHFEIDIEVTACPANRSEWMQTFYIYPVGIDETLRVDLEMQCECPCEVDGHPSFVRNSPNCSGFGTFKCGLCECDQSHFGRRCECDAESSQGITSTGCKADANSTMECSGRGNCLCNQKSLDNIVNVIISHVIVTTECCVLDLNTVGACVASAIVKTAGLVQRVTVAPLMTPVYLLREERCARARESVSAVCANVLKIAREDIPAGSARNARPVLEDVQEFKNCIQCQVLQDRTIVRGGNEAKDENLCVYFDEDECKFEYVYWYDAQGKIHLRAQQERECPPHVYILGLVLGVIGAIVLIGLAFLCLWKILTSIHDRREFAKFEKERMLAKWDTKLNSLIY

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Integrin beta pat-3 Possible role in cell-cell interactions. Integrin alpha pat-1/beta pat-3 is a receptor for laminin. Integrin alpha pat-2/beta pat-3 recognizes the sequence R-G-D in its ligands.confidentQ27874
Integrin beta-PS Integrin alpha-PS1/beta-PS is a receptor for laminin. Integrin alpha-PS2/beta-PS is a receptor for Tig (Tiggrin). Also binds to wb (wing blister) and Ten-m (Tenascin major). Required for many embryonic (dorsal closure and somatic muscle attachments) and post-embryonic developmental processes (attachment between cell layers of imaginal disks, organization of ommatidial arrays and flight muscle development). Involved in the function and/or development of the olfactory system.confidentP11584
Integrin beta-1 Integrins alpha-1/beta-1, alpha-2/beta-1, alpha-10/beta-1 and alpha-11/beta-1 are receptors for collagen. Integrins alpha-1/beta-1 and alpha-2/beta-2 recognize the proline-hydroxylated sequence G-F-P-G-E-R in collagen. Integrins alpha-2/beta-1, alpha-3/beta-1, alpha-4/beta-1, alpha-5/beta-1, alpha-8/beta-1, alpha-10/beta-1, alpha-11/beta-1 and alpha-V/beta-1 are receptors for fibronectin. Alpha-4/beta-1 recognizes one or more domains within the alternatively spliced CS-1 and CS-5 regions of fibronectin. Integrin alpha-5/beta-1 is a receptor for fibrinogen. Integrin alpha-1/beta-1, alpha-2/beta-1, alpha-6/beta-1 and alpha-7/beta-1 are receptors for lamimin. Integrin alpha-4/beta-1 is a receptor for VCAM1. It recognizes the sequence Q-I-D-S in VCAM1. Integrin alpha-9/beta-1 is a receptor for VCAM1, cytotactin and osteopontin. It recognizes the sequence A-E-I-D-G-I-E-L in cytotactin. Integrin alpha-3/beta-1 is a receptor for epiligrin, thrombospondin and CSPG4. Alpha-3/beta-1 may mediate with LGALS3 the stimulation by CSPG4 of endothelial cells migration. Integrin alpha-V/beta-1 is a receptor for vitronectin. Beta-1 integrins recognize the sequence R-G-D in a wide array of ligands. Isoform beta-1B interferes with isoform beta-1A resulting in a dominant negative effect on cell adhesion and migration (in vitro). In case of HIV-1 infection, the interaction with extracellular viral Tat protein seems to enhance angiogenesis in Kaposi's sarcoma lesions. When associated with alpha-7/beta-1 integrin, regulates cell adhesion and laminin matrix deposition. Involved in promoting endothelial cell motility and angiogenesis. May be involved in up-regulation of the activity of kinases such as PKC via binding to KRT1. Together with KRT1 and GNB2L1/RACK1, serves as a platform for SRC activation or inactivation. Plays a mechanistic adhesive role during telophase, required for the successful completion of cytokinesis.confidentP05556

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0051716 [BP]cellular response to stimulusprobableGO:0008150, GO:0050896, GO:0009987, GO:0044763, GO:0044699
GO:0031252 [CC]cell leading edgeprobableGO:0005575, GO:0044464, GO:0005623
GO:0042592 [BP]homeostatic processprobableGO:0008150, GO:0065008, GO:0065007
GO:0005925 [CC]focal adhesionprobableGO:0070161, GO:0005575, GO:0005912, GO:0005924, GO:0030054, GO:0030055
GO:0050794 [BP]regulation of cellular processprobableGO:0008150, GO:0065007, GO:0050789
GO:0043229 [CC]intracellular organelleprobableGO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0044424, GO:0043226
GO:0005515 [MF]protein bindingprobableGO:0003674, GO:0005488
GO:0016337 [BP]cell-cell adhesionprobableGO:0009987, GO:0008150, GO:0007155, GO:0044763, GO:0022610, GO:0044699
GO:0008305 [CC]integrin complexprobableGO:0043234, GO:0043235, GO:0032991, GO:0044459, GO:0016021, GO:0016020, GO:0044464, GO:0005623, GO:0005575, GO:0071944, GO:0005887, GO:0005886, GO:0044425, GO:0031226, GO:0031224
GO:0044444 [CC]cytoplasmic partprobableGO:0005737, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0044424
GO:0009986 [CC]cell surfaceprobableGO:0005575, GO:0044464, GO:0005623

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 3FCS, chain B
Confidence level:very confident
Coverage over the Query: 2-60,90-683
View the alignment between query and template
View the model in PyMOL
Template: 2KNC, chain B
Confidence level:very confident
Coverage over the Query: 678-741
View the alignment between query and template
View the model in PyMOL