Psyllid ID: psy12966
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 741 | 2.2.26 [Sep-21-2011] | |||||||
| P11584 | 846 | Integrin beta-PS OS=Droso | yes | N/A | 0.940 | 0.823 | 0.451 | 1e-170 | |
| Q27874 | 809 | Integrin beta pat-3 OS=Ca | yes | N/A | 0.902 | 0.826 | 0.378 | 1e-124 | |
| B0FYY4 | 798 | Integrin beta-1 OS=Ovis a | N/A | N/A | 0.851 | 0.790 | 0.385 | 1e-121 | |
| P05556 | 798 | Integrin beta-1 OS=Homo s | yes | N/A | 0.846 | 0.785 | 0.390 | 1e-117 | |
| P12607 | 798 | Integrin beta-1-B OS=Xeno | N/A | N/A | 0.850 | 0.789 | 0.382 | 1e-116 | |
| P12606 | 798 | Integrin beta-1-A OS=Xeno | N/A | N/A | 0.850 | 0.789 | 0.382 | 1e-116 | |
| A5Z1X6 | 798 | Integrin beta-1 OS=Camelu | N/A | N/A | 0.851 | 0.790 | 0.388 | 1e-116 | |
| Q9GLP0 | 798 | Integrin beta-1 OS=Sus sc | no | N/A | 0.852 | 0.791 | 0.387 | 1e-116 | |
| P53712 | 798 | Integrin beta-1 OS=Bos ta | no | N/A | 0.851 | 0.790 | 0.387 | 1e-116 | |
| P53713 | 798 | Integrin beta-1 OS=Felis | N/A | N/A | 0.851 | 0.790 | 0.382 | 1e-114 |
| >sp|P11584|ITBX_DROME Integrin beta-PS OS=Drosophila melanogaster GN=mys PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 599 bits (1544), Expect = e-170, Method: Compositional matrix adjust.
Identities = 359/795 (45%), Positives = 455/795 (57%), Gaps = 98/795 (12%)
Query: 21 CFQPSLNADDNLEQ-----CPEEYVFNPANVFSVLDNRHLAKASKYHHSQHSSSSSSSSS 75
C QP Q CPEE+ ++P V +L N L K + S+ S S
Sbjct: 58 CMQPDFKGQSRCYQNTSSLCPEEFAYSPITVEQILVNNKLTNQYKAELAAGGGGSAMSGS 117
Query: 76 SGSFSSGGSAS--------------------GHSEAVQISPQHVSLKLRINEAYRMVVDY 115
S S S S+S E VQI PQ + L LR+NE + + + Y
Sbjct: 118 SSSSYSSSSSSSSFYSQSSSGSSSASGYEEYSAGEIVQIQPQSMRLALRVNEKHNIKISY 177
Query: 116 AQAEDYPVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPY 175
+QAE YPVDLYYLMDLS SM DDK +LS LGD+LS +M+ +T+NF LGFGSFVDKV+MPY
Sbjct: 178 SQAEGYPVDLYYLMDLSKSMEDDKAKLSTLGDKLSETMKRITNNFHLGFGSFVDKVLMPY 237
Query: 176 VSMVPKNLLEPCAGCAAPYGYHNVMSLSQDTSRFSAQVKGANVSGNLDGPEGGFDAIMQA 235
VS +PK L PC C APYGY N M L+ +T FS +VK A VSGNLD PEGGFDAIMQA
Sbjct: 238 VSTIPKKLEHPCENCKAPYGYQNHMPLNNNTESFSNEVKNATVSGNLDAPEGGFDAIMQA 297
Query: 236 IVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGLCHMDRNGMYTHSTVQDY 295
I C+ +IGWR++ARRLLVFSTDA FH+AGDGKLGG++ PNDG CH+ G YTHST+QDY
Sbjct: 298 IACRSQIGWREQARRLLVFSTDAGFHYAGDGKLGGVIAPNDGECHLSPKGEYTHSTLQDY 357
Query: 296 PSISQINMKVKQNSINLIFAVTAEQIGVYERLKTHIEGSSSGTLTNDSSNVVDLVKDQYN 355
PSISQIN KVK N+IN+IFAVTA Q+ VYE+L HI+GSS+ L NDSSNVV+LVK++Y
Sbjct: 358 PSISQINQKVKDNAINIIFAVTASQLSVYEKLVEHIQGSSAAKLDNDSSNVVELVKEEYR 417
Query: 356 KISSSVEMKDTSSSAVKVTYHSKCLNKDGPSKPTAKCDGLKVGTVVHFEIDIEVTACPAN 415
KISSSVEMKD ++ VK+TY S CL+ +GP T+KCD LK G V F I++ CP +
Sbjct: 418 KISSSVEMKDNATGDVKITYFSSCLS-NGPEVQTSKCDNLKEGQQVSFTAQIQLLKCPED 476
Query: 416 RSEWMQTFYIYPVGIDETLRVDLEMQCECPCEVDGHPSFVRNSPNCSGFGTFKCGL---- 471
+W QT +I PVGI+E +++ L M C CPCE G + + +CSG GT CG+
Sbjct: 477 PRDWTQTIHISPVGINEVMQIQLTMLCSCPCENPGSIGYQVQANSCSGHGTSMCGICNCD 536
Query: 472 -------CECD----QSHFGRRCECDAESSQGITSTGCKADANSTMECSGRGN------- 513
CEC S F C A+S+ +G EC R N
Sbjct: 537 DSYFGNKCECSATDLTSKFANDTSCRADSTSTTDCSGRGHCVCGACECHKRPNPIEIISG 596
Query: 514 --CLCNQKSLDNIVNVIISHVI-VTTECCVLDLNTVGACVASAIVKTAGLVQRVTVAPLM 570
C C+ S + N + S T EC G C + + + M
Sbjct: 597 KHCECDNFSCERNRNQLCSGPDHGTCEC--------GRCKCKPGWTGSNCGCQESNDTCM 648
Query: 571 TPVYLLREERCARARESVSAVC-ANVLKIAR------EDIPAGSARNARPVLEDVQEFKN 623
P E C+ VC V R E P S R QE K+
Sbjct: 649 PPG---GGEICSGHGTCECGVCKCTVNDQGRFSGRHCEKCPTCSGR--------CQELKD 697
Query: 624 CIQCQVLQDRTIVRGGN-------------------EAKDENLCVYFDEDECKFEYVYWY 664
C+QCQ+ + + G + E KDE +C +FDED+CKF ++ Y
Sbjct: 698 CVQCQMYKTGELKNGDDCARNCTQFVPVGVEKVEIDETKDEQMCKFFDEDDCKF--MFKY 755
Query: 665 DAQGKIHLRAQQERECPPHVYILGLVLGVIGAIVLIGLAFLCLWKILTSIHDRREFAKFE 724
QG++H+ AQ+ +ECP V++LG+V+GVI AIVL+GLA L LWK+LT+IHDRREFA+FE
Sbjct: 756 SEQGELHVYAQENKECPAKVFMLGIVMGVIAAIVLVGLAILLLWKLLTTIHDRREFARFE 815
Query: 725 KERMLAKWDTKLNSL 739
KERM AKWDT N +
Sbjct: 816 KERMNAKWDTGENPI 830
|
Integrin alpha-PS1/beta-PS is a receptor for laminin. Integrin alpha-PS2/beta-PS is a receptor for Tig (Tiggrin). Also binds to wb (wing blister) and Ten-m (Tenascin major). Required for many embryonic (dorsal closure and somatic muscle attachments) and post-embryonic developmental processes (attachment between cell layers of imaginal disks, organization of ommatidial arrays and flight muscle development). Involved in the function and/or development of the olfactory system. Drosophila melanogaster (taxid: 7227) |
| >sp|Q27874|PAT3_CAEEL Integrin beta pat-3 OS=Caenorhabditis elegans GN=pat-3 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|B0FYY4|ITB1_SHEEP Integrin beta-1 OS=Ovis aries GN=ITGB1 PE=2 SV=1 | Back alignment and function description |
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| >sp|P05556|ITB1_HUMAN Integrin beta-1 OS=Homo sapiens GN=ITGB1 PE=1 SV=2 | Back alignment and function description |
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| >sp|P12607|ITB1B_XENLA Integrin beta-1-B OS=Xenopus laevis GN=itgb1-b PE=2 SV=1 | Back alignment and function description |
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| >sp|P12606|ITB1A_XENLA Integrin beta-1-A OS=Xenopus laevis GN=itgb1-a PE=2 SV=1 | Back alignment and function description |
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| >sp|A5Z1X6|ITB1_CAMBA Integrin beta-1 OS=Camelus bactrianus GN=ITGB1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9GLP0|ITB1_PIG Integrin beta-1 OS=Sus scrofa GN=ITGB1 PE=2 SV=1 | Back alignment and function description |
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| >sp|P53712|ITB1_BOVIN Integrin beta-1 OS=Bos taurus GN=ITGB1 PE=1 SV=3 | Back alignment and function description |
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| >sp|P53713|ITB1_FELCA Integrin beta-1 OS=Felis catus GN=ITGB1 PE=2 SV=1 | Back alignment and function description |
|---|
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 741 | ||||||
| 242023700 | 876 | myospheroid protein, putative [Pediculus | 0.983 | 0.832 | 0.548 | 0.0 | |
| 328711107 | 824 | PREDICTED: integrin beta-PS-like [Acyrth | 0.914 | 0.822 | 0.525 | 0.0 | |
| 340721211 | 841 | PREDICTED: integrin beta-PS-like [Bombus | 0.956 | 0.843 | 0.532 | 0.0 | |
| 350399338 | 838 | PREDICTED: integrin beta-PS-like [Bombus | 0.956 | 0.846 | 0.534 | 0.0 | |
| 322785595 | 843 | hypothetical protein SINV_04656 [Solenop | 0.955 | 0.839 | 0.522 | 0.0 | |
| 307184384 | 840 | Integrin beta-PS [Camponotus floridanus] | 0.954 | 0.841 | 0.525 | 0.0 | |
| 307214734 | 990 | Integrin beta-PS [Harpegnathos saltator] | 0.950 | 0.711 | 0.528 | 0.0 | |
| 332020245 | 873 | Integrin beta-PS [Acromyrmex echinatior] | 0.946 | 0.802 | 0.522 | 0.0 | |
| 321469976 | 815 | hypothetical protein DAPPUDRAFT_196539 [ | 0.948 | 0.862 | 0.495 | 0.0 | |
| 195447350 | 842 | GK25655 [Drosophila willistoni] gi|19416 | 0.951 | 0.837 | 0.489 | 0.0 |
| >gi|242023700|ref|XP_002432269.1| myospheroid protein, putative [Pediculus humanus corporis] gi|212517678|gb|EEB19531.1| myospheroid protein, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 768 bits (1983), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/788 (54%), Positives = 526/788 (66%), Gaps = 59/788 (7%)
Query: 5 PVCPTYNSSEYGDKKRCFQPSLNADDNLEQCPEEYVFNPANVFSVLDNRHLAKASKYHHS 64
P C + +GD KRCFQP++N + ++ QC E +V NP NVF++++ R L KAS+ +
Sbjct: 80 PTCAWCSQPNFGDTKRCFQPNININVHM-QCDEAFVVNPDNVFTLVEARELKKASRSGYE 138
Query: 65 QHSSSSSSSSSSGSFSSGGSASG------------------HSEAVQISPQHVSLKLRIN 106
++ S S+S EAVQISPQ V+LKLRIN
Sbjct: 139 GGGGGGGYEAAYEESHSHSSSSSFSSSSSSSSSGSYGSSYYQHEAVQISPQRVALKLRIN 198
Query: 107 EAYRMVVDYAQAEDYPVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEVTSNFRLGFGS 166
E YRM YAQAEDYPVDLYYLMDLS SM DDKD+LS LG++L+ +MQ +TSNFRLGFGS
Sbjct: 199 EPYRMDFSYAQAEDYPVDLYYLMDLSKSMEDDKDKLSFLGNRLAQTMQNITSNFRLGFGS 258
Query: 167 FVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHNVMSLSQDTSRFSAQVKGANVSGNLDGPE 226
FVDKVVMPYVS VPKNL EPC GCAAPYG+ NVMSLS DT RF+ +V A VSGNLD PE
Sbjct: 259 FVDKVVMPYVSTVPKNLAEPCHGCAAPYGFQNVMSLSTDTYRFAVKVSNAAVSGNLDAPE 318
Query: 227 GGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGLCHMDRNGM 286
GGFDAIMQAIVCK EIGWR++AR+LLVFSTDA FH+AGDGKLGGIVKPNDG CH+D GM
Sbjct: 319 GGFDAIMQAIVCKNEIGWREKARKLLVFSTDAGFHYAGDGKLGGIVKPNDGECHLDSRGM 378
Query: 287 YTHSTVQDYPSISQINMKVKQNSINLIFAVTAEQIGVYERLKTHIEGSSSGTLTNDSSNV 346
YTHS +QDYPSISQ+NMKVK+NSIN+IFAVTA+Q GVYE+L +IEG+SSGTL++DSSNV
Sbjct: 379 YTHSKLQDYPSISQVNMKVKENSINVIFAVTADQFGVYEQLGENIEGASSGTLSSDSSNV 438
Query: 347 VDLVKDQYNKISSSVEMKDTSSSAVKVTYHSKCLNKDGPSKPTAKCDGLKVGTVVHFEID 406
VDLVK+QY+KISSSVEMKDT+SSA+KV+Y+S CL GP K T KCDGLKVGTVV+F +
Sbjct: 439 VDLVKEQYDKISSSVEMKDTASSAIKVSYYSSCLG-GGPPKQTNKCDGLKVGTVVNFSAE 497
Query: 407 IEVTACPANRSEWMQTFYIYPVGIDETLRVDLEMQCECPCEVDGHPSFVRNSPNCSGFGT 466
IEV +CP ++ EW QTF IYPVGI E L VDLEMQCECPCE +P + S CSGFG
Sbjct: 498 IEVASCPPDKKEWRQTFKIYPVGIQEYLVVDLEMQCECPCENPENPEYEDKSGTCSGFGN 557
Query: 467 FKCGLCECDQSHFGRRCECDAES--SQGITSTGCKADANSTMECSGRGNCLCN--QKSLD 522
+KCG+CECD SHFGR CECD+ES GC+ D + ++CSGRG C+C + +
Sbjct: 558 YKCGICECDSSHFGRFCECDSESLNVDKDIQGGCRPDNFTFIDCSGRGTCMCGVCECEIR 617
Query: 523 NIVNVIISHVIVTTECCVLDLNTV--------GACVASAIVKTAGLVQRVTVAPLMTPVY 574
+ +IS + D N G CV AG
Sbjct: 618 SDPTEVISGRFCECDNFSCDRNNGILCSGPDHGTCVCGKCQCLAGWTGDACDCRASNDTC 677
Query: 575 LLRE--ERCARARESVSAVC-ANVLKIAREDIPAGSARNAR--PVLED-VQEFKNCIQCQ 628
+ E E C S VC V K +E+ S R P EFK C+QCQ
Sbjct: 678 ISPEGGEVC-----SGKGVCECGVCKCDQEEEGRYSGRFCEKCPTCPGRCLEFKECVQCQ 732
Query: 629 VLQDRTI----------------VRGGNEAKDENLCVYFDEDECKFEYVYWYDAQGKIHL 672
V + + V NE +DENLC Y+DED+C+F YVY YD GK+++
Sbjct: 733 VYKTGPLTEKECANCSFIPTTAEVIEANEERDENLCAYYDEDDCRFAYVYGYDDMGKVYV 792
Query: 673 RAQQERECPPHVYILGLVLGVIGAIVLIGLAFLCLWKILTSIHDRREFAKFEKERMLAKW 732
RAQ++R+CP + ILG+VL VIGAI+LIGLA LC WK+ T+IHDRREFAKFEK+R++AKW
Sbjct: 793 RAQEKRDCPAKINILGIVLSVIGAILLIGLALLCCWKLCTTIHDRREFAKFEKDRLMAKW 852
Query: 733 DTKLNSLI 740
+T N +
Sbjct: 853 NTDENPIF 860
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328711107|ref|XP_003244447.1| PREDICTED: integrin beta-PS-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
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| >gi|340721211|ref|XP_003399018.1| PREDICTED: integrin beta-PS-like [Bombus terrestris] | Back alignment and taxonomy information |
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| >gi|350399338|ref|XP_003485493.1| PREDICTED: integrin beta-PS-like [Bombus impatiens] | Back alignment and taxonomy information |
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| >gi|322785595|gb|EFZ12250.1| hypothetical protein SINV_04656 [Solenopsis invicta] | Back alignment and taxonomy information |
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| >gi|307184384|gb|EFN70798.1| Integrin beta-PS [Camponotus floridanus] | Back alignment and taxonomy information |
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| >gi|307214734|gb|EFN89654.1| Integrin beta-PS [Harpegnathos saltator] | Back alignment and taxonomy information |
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| >gi|332020245|gb|EGI60681.1| Integrin beta-PS [Acromyrmex echinatior] | Back alignment and taxonomy information |
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| >gi|321469976|gb|EFX80954.1| hypothetical protein DAPPUDRAFT_196539 [Daphnia pulex] | Back alignment and taxonomy information |
|---|
| >gi|195447350|ref|XP_002071175.1| GK25655 [Drosophila willistoni] gi|194167260|gb|EDW82161.1| GK25655 [Drosophila willistoni] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 741 | ||||||
| FB|FBgn0004657 | 846 | mys "myospheroid" [Drosophila | 0.574 | 0.503 | 0.599 | 4.9e-187 | |
| UNIPROTKB|F1N8N7 | 803 | ITGB1 "Integrin beta" [Gallus | 0.565 | 0.521 | 0.463 | 8.8e-131 | |
| WB|WBGene00003930 | 809 | pat-3 [Caenorhabditis elegans | 0.566 | 0.519 | 0.474 | 1.9e-130 | |
| UNIPROTKB|P07228 | 803 | ITGB1 "Integrin beta-1" [Gallu | 0.565 | 0.521 | 0.463 | 4.8e-130 | |
| UNIPROTKB|P05556 | 798 | ITGB1 "Integrin beta-1" [Homo | 0.564 | 0.523 | 0.466 | 1.1e-126 | |
| ZFIN|ZDB-GENE-030909-10 | 795 | itgb1b "integrin, beta 1b" [Da | 0.561 | 0.523 | 0.477 | 4e-126 | |
| ZFIN|ZDB-GENE-060803-2 | 798 | itgb1a "integrin, beta 1a" [Da | 0.560 | 0.520 | 0.469 | 1.1e-122 | |
| RGD|2927 | 799 | Itgb1 "integrin, beta 1" [Ratt | 0.565 | 0.524 | 0.459 | 2.5e-121 | |
| UNIPROTKB|K7GS94 | 801 | ITGB1 "Integrin beta" [Sus scr | 0.564 | 0.521 | 0.464 | 6.6e-121 | |
| UNIPROTKB|F1RVE7 | 798 | ITGB1 "Integrin beta" [Sus scr | 0.564 | 0.523 | 0.464 | 1.4e-120 |
| FB|FBgn0004657 mys "myospheroid" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1407 (500.3 bits), Expect = 4.9e-187, Sum P(4) = 4.9e-187
Identities = 257/429 (59%), Positives = 320/429 (74%)
Query: 90 EAVQISPQHVSLKLRINEAYRMVVDYAQAEDYPVDLYYLMDLSNSMRDDKDRLSALGDQL 149
E VQI PQ + L LR+NE + + + Y+QAE YPVDLYYLMDLS SM DDK +LS LGD+L
Sbjct: 152 EIVQIQPQSMRLALRVNEKHNIKISYSQAEGYPVDLYYLMDLSKSMEDDKAKLSTLGDKL 211
Query: 150 SASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAGCAAPYGYHNVMSLSQDTSRF 209
S +M+ +T+NF LGFGSFVDKV+MPYVS +PK L PC C APYGY N M L+ +T F
Sbjct: 212 SETMKRITNNFHLGFGSFVDKVLMPYVSTIPKKLEHPCENCKAPYGYQNHMPLNNNTESF 271
Query: 210 SAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLG 269
S +VK A VSGNLD PEGGFDAIMQAI C+ +IGWR++ARRLLVFSTDA FH+AGDGKLG
Sbjct: 272 SNEVKNATVSGNLDAPEGGFDAIMQAIACRSQIGWREQARRLLVFSTDAGFHYAGDGKLG 331
Query: 270 GIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVTAEQIGVYERLKT 329
G++ PNDG CH+ G YTHST+QDYPSISQIN KVK N+IN+IFAVTA Q+ VYE+L
Sbjct: 332 GVIAPNDGECHLSPKGEYTHSTLQDYPSISQINQKVKDNAINIIFAVTASQLSVYEKLVE 391
Query: 330 HIEGSSSGTLTNDSSNVVDLVKDQYNKISSSVEMKDTSSSAVKVTYHSKCLNKDGPSKPT 389
HI+GSS+ L NDSSNVV+LVK++Y KISSSVEMKD ++ VK+TY S CL+ +GP T
Sbjct: 392 HIQGSSAAKLDNDSSNVVELVKEEYRKISSSVEMKDNATGDVKITYFSSCLS-NGPEVQT 450
Query: 390 AKCDGLKVGTVVHFEIDIEVTACPANRSEWMQTFYIYPVGIDETLRVDLEMQCECPCEVD 449
+KCD LK G V F I++ CP + +W QT +I PVGI+E +++ L M C CPCE
Sbjct: 451 SKCDNLKEGQQVSFTAQIQLLKCPEDPRDWTQTIHISPVGINEVMQIQLTMLCSCPCENP 510
Query: 450 GHPSFVRNSPNCSGFGTFKCGLCECDQSHFGRRCECDAE--SSQGITSTGCKADANSTME 507
G + + +CSG GT CG+C CD S+FG +CEC A +S+ T C+AD+ ST +
Sbjct: 511 GSIGYQVQANSCSGHGTSMCGICNCDDSYFGNKCECSATDLTSKFANDTSCRADSTSTTD 570
Query: 508 CSGRGNCLC 516
CSGRG+C+C
Sbjct: 571 CSGRGHCVC 579
|
|
| UNIPROTKB|F1N8N7 ITGB1 "Integrin beta" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| WB|WBGene00003930 pat-3 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P07228 ITGB1 "Integrin beta-1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P05556 ITGB1 "Integrin beta-1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-030909-10 itgb1b "integrin, beta 1b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-060803-2 itgb1a "integrin, beta 1a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| RGD|2927 Itgb1 "integrin, beta 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|K7GS94 ITGB1 "Integrin beta" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1RVE7 ITGB1 "Integrin beta" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P05556 | ITB1_HUMAN | No assigned EC number | 0.3908 | 0.8461 | 0.7857 | yes | N/A |
| Q27874 | PAT3_CAEEL | No assigned EC number | 0.3783 | 0.9028 | 0.8269 | yes | N/A |
| P11584 | ITBX_DROME | No assigned EC number | 0.4515 | 0.9406 | 0.8238 | yes | N/A |
| O54890 | ITB3_MOUSE | No assigned EC number | 0.3566 | 0.8232 | 0.7750 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 741 | |||
| pfam00362 | 424 | pfam00362, Integrin_beta, Integrin, beta chain | 0.0 | |
| smart00187 | 423 | smart00187, INB, Integrin beta subunits (N-termina | 0.0 | |
| pfam08725 | 46 | pfam08725, Integrin_b_cyt, Integrin beta cytoplasm | 1e-12 | |
| pfam07965 | 84 | pfam07965, Integrin_B_tail, Integrin beta tail dom | 3e-07 |
| >gnl|CDD|215878 pfam00362, Integrin_beta, Integrin, beta chain | Back alignment and domain information |
|---|
Score = 581 bits (1500), Expect = 0.0
Identities = 208/435 (47%), Positives = 262/435 (60%), Gaps = 42/435 (9%)
Query: 17 DKKRCFQPSLNADDNLEQ--CPEEYVFNPANVFSVLDNRHLAKASKYHHSQHSSSSSSSS 74
+ RC + ++L + C EE + NP + V +N+ L
Sbjct: 25 NSPRC-----DTLESLLEKGCSEEDIENPRSELEVTENKPL------------------- 60
Query: 75 SSGSFSSGGSASGHSEAVQISPQHVSLKLRINEAYRMVVDYAQAEDYPVDLYYLMDLSNS 134
+AVQISPQ V+LKLR E + QAEDYPVDLYYLMDLS S
Sbjct: 61 --------SDKGSGDDAVQISPQKVTLKLRPGEPQTFNLKVRQAEDYPVDLYYLMDLSYS 112
Query: 135 MRDDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCA----GC 190
M+DD + L LG L+ M +TSNFRLGFGSFVDK V PYVS VP+ L PC+ GC
Sbjct: 113 MKDDLENLKTLGTDLAKEMANITSNFRLGFGSFVDKTVSPYVSTVPEKLKNPCSSKNPGC 172
Query: 191 AAPYGYHNVMSLSQDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARR 250
P+G+ +V+SL+ DT F+ +VK +SGNLD PEGGFDAIMQA VC EEIGWR+ ARR
Sbjct: 173 QPPFGFRHVLSLTDDTDLFNEEVKKQKISGNLDAPEGGFDAIMQAAVCGEEIGWRNEARR 232
Query: 251 LLVFSTDAEFHHAGDGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSI 310
LLVF+TDA FH AGDGKLGGIV+PNDG CH+D NG YT ST DYPS+ Q+ K+ +N+I
Sbjct: 233 LLVFTTDAGFHFAGDGKLGGIVEPNDGQCHLDDNGEYTASTTLDYPSVGQLAEKLSENNI 292
Query: 311 NLIFAVTAEQIGVYERLKTHIEGSSSGTLTNDSSNVVDLVKDQYNKISSSVEMK-DTSSS 369
IFAVT + +YE L I GS+ G L++DSSNVV L+KD YNKISS VE++ D
Sbjct: 293 QPIFAVTENVVDLYEELSELIPGSTVGELSSDSSNVVQLIKDAYNKISSKVELEHDNLPD 352
Query: 370 AVKVTYHSKCLNKDGPSKPTAKCDGLKVGTVVHFEIDIEVTACPANRSEWMQTFYIYPVG 429
V V+Y S C + KC +K+G V F +++ CP + TF I P+G
Sbjct: 353 GVSVSYTSDCPGGEEL-PGKGKCSNVKIGDEVSFNVEVTAKECPKEGKKT--TFTIKPLG 409
Query: 430 IDETLRVDLEMQCEC 444
+ L V+LE CEC
Sbjct: 410 FSDELTVELEFICEC 424
|
Integrins have been found in animals and their homologues have also been found in cyanobacteria, probably due to horizontal gene transfer. The sequences repeats have been trimmed due to an overlap with EGF. Length = 424 |
| >gnl|CDD|197563 smart00187, INB, Integrin beta subunits (N-terminal portion of extracellular region) | Back alignment and domain information |
|---|
| >gnl|CDD|149701 pfam08725, Integrin_b_cyt, Integrin beta cytoplasmic domain | Back alignment and domain information |
|---|
| >gnl|CDD|219669 pfam07965, Integrin_B_tail, Integrin beta tail domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 741 | |||
| KOG1226|consensus | 783 | 100.0 | ||
| smart00187 | 423 | INB Integrin beta subunits (N-terminal portion of | 100.0 | |
| PF00362 | 426 | Integrin_beta: Integrin, beta chain; InterPro: IPR | 100.0 | |
| KOG1226|consensus | 783 | 99.71 | ||
| PF08725 | 47 | Integrin_b_cyt: Integrin beta cytoplasmic domain; | 99.4 | |
| KOG1225|consensus | 525 | 99.39 | ||
| PF07965 | 87 | Integrin_B_tail: Integrin beta tail domain; InterP | 99.34 | |
| KOG1225|consensus | 525 | 99.27 | ||
| smart00327 | 177 | VWA von Willebrand factor (vWF) type A domain. VWA | 99.17 | |
| cd01450 | 161 | vWFA_subfamily_ECM Von Willebrand factor type A (v | 99.0 | |
| TIGR03436 | 296 | acidobact_VWFA VWFA-related Acidobacterial domain. | 98.97 | |
| PF13519 | 172 | VWA_2: von Willebrand factor type A domain; PDB: 3 | 98.97 | |
| cd01475 | 224 | vWA_Matrilin VWA_Matrilin: In cartilaginous plate, | 98.95 | |
| cd01480 | 186 | vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI | 98.94 | |
| cd01472 | 164 | vWA_collagen von Willebrand factor (vWF) type A do | 98.9 | |
| cd01469 | 177 | vWA_integrins_alpha_subunit Integrins are a class | 98.88 | |
| cd00198 | 161 | vWFA Von Willebrand factor type A (vWA) domain was | 98.86 | |
| cd01482 | 164 | vWA_collagen_alphaI-XII-like Collagen: The extrace | 98.84 | |
| cd01453 | 183 | vWA_transcription_factor_IIH_type Transcription fa | 98.8 | |
| cd01471 | 186 | vWA_micronemal_protein Micronemal proteins: The To | 98.8 | |
| cd01474 | 185 | vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxi | 98.8 | |
| PF00092 | 178 | VWA: von Willebrand factor type A domain; InterPro | 98.8 | |
| cd01476 | 163 | VWA_integrin_invertebrates VWA_integrin (invertebr | 98.73 | |
| PTZ00441 | 576 | sporozoite surface protein 2 (SSP2); Provisional | 98.69 | |
| cd01451 | 178 | vWA_Magnesium_chelatase Magnesium chelatase: Mg-ch | 98.63 | |
| cd01477 | 193 | vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand | 98.54 | |
| cd01481 | 165 | vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(V | 98.49 | |
| cd01473 | 192 | vWA_CTRP CTRP for CS protein-TRAP-related protein: | 98.46 | |
| cd01467 | 180 | vWA_BatA_type VWA BatA type: Von Willebrand factor | 98.45 | |
| cd01465 | 170 | vWA_subgroup VWA subgroup: Von Willebrand factor t | 98.2 | |
| cd01470 | 198 | vWA_complement_factors Complement factors B and C2 | 98.17 | |
| cd01463 | 190 | vWA_VGCC_like VWA Voltage gated Calcium channel li | 98.15 | |
| cd01461 | 171 | vWA_interalpha_trypsin_inhibitor vWA_interalpha tr | 98.08 | |
| PRK13685 | 326 | hypothetical protein; Provisional | 97.99 | |
| cd01464 | 176 | vWA_subfamily VWA subfamily: Von Willebrand factor | 97.89 | |
| cd01454 | 174 | vWA_norD_type norD type: Denitrifying bacteria con | 97.89 | |
| PRK13406 | 584 | bchD magnesium chelatase subunit D; Provisional | 97.86 | |
| cd01452 | 187 | VWA_26S_proteasome_subunit 26S proteasome plays a | 97.86 | |
| cd01466 | 155 | vWA_C3HC4_type VWA C3HC4-type: Von Willebrand fact | 97.82 | |
| cd01456 | 206 | vWA_ywmD_type VWA ywmD type:Von Willebrand factor | 97.75 | |
| COG1240 | 261 | ChlD Mg-chelatase subunit ChlD [Coenzyme metabolis | 97.74 | |
| PF11265 | 226 | Med25_VWA: Mediator complex subunit 25 von Willebr | 97.71 | |
| cd01455 | 191 | vWA_F11C1-5a_type Von Willebrand factor type A (vW | 97.7 | |
| TIGR00868 | 863 | hCaCC calcium-activated chloride channel protein 1 | 97.68 | |
| TIGR02442 | 633 | Cob-chelat-sub cobaltochelatase subunit. A number | 97.59 | |
| cd01462 | 152 | VWA_YIEM_type VWA YIEM type: Von Willebrand factor | 97.53 | |
| PF13768 | 155 | VWA_3: von Willebrand factor type A domain | 97.51 | |
| cd01460 | 266 | vWA_midasin VWA_Midasin: Midasin is a member of th | 97.45 | |
| PF07974 | 32 | EGF_2: EGF-like domain; InterPro: IPR013111 A sequ | 97.44 | |
| TIGR02031 | 589 | BchD-ChlD magnesium chelatase ATPase subunit D. Th | 97.41 | |
| TIGR03788 | 596 | marine_srt_targ marine proteobacterial sortase tar | 97.4 | |
| KOG0994|consensus | 1758 | 97.11 | ||
| cd01458 | 218 | vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heter | 97.07 | |
| cd01457 | 199 | vWA_ORF176_type VWA ORF176 type: Von Willebrand fa | 96.76 | |
| PF07974 | 32 | EGF_2: EGF-like domain; InterPro: IPR013111 A sequ | 96.53 | |
| KOG4289|consensus | 2531 | 96.48 | ||
| KOG0994|consensus | 1758 | 96.38 | ||
| PLN00162 | 761 | transport protein sec23; Provisional | 96.22 | |
| TIGR01651 | 600 | CobT cobaltochelatase, CobT subunit. This model de | 96.1 | |
| KOG1219|consensus | 4289 | 96.07 | ||
| KOG1219|consensus | 4289 | 95.61 | ||
| PF11775 | 219 | CobT_C: Cobalamin biosynthesis protein CobT VWA do | 95.46 | |
| cd01478 | 267 | Sec23-like Sec23-like: Protein and membrane traffi | 95.46 | |
| COG2425 | 437 | Uncharacterized protein containing a von Willebran | 95.05 | |
| PF05762 | 222 | VWA_CoxE: VWA domain containing CoxE-like protein; | 95.04 | |
| PF10138 | 200 | vWA-TerF-like: vWA found in TerF C terminus ; Inte | 94.92 | |
| KOG4260|consensus | 350 | 94.86 | ||
| cd01479 | 244 | Sec24-like Sec24-like: Protein and membrane traffi | 94.01 | |
| COG4245 | 207 | TerY Uncharacterized protein encoded in toxicity p | 93.88 | |
| cd01468 | 239 | trunk_domain trunk domain. COPII-coated vesicles c | 93.55 | |
| PF09967 | 126 | DUF2201: VWA-like domain (DUF2201); InterPro: IPR0 | 93.2 | |
| KOG4289|consensus | 2531 | 93.13 | ||
| KOG2807|consensus | 378 | 93.0 | ||
| PF04056 | 193 | Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like pro | 92.76 | |
| PF12661 | 13 | hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E | 92.7 | |
| smart00051 | 63 | DSL delta serrate ligand. | 92.22 | |
| KOG3637|consensus | 1030 | 91.53 | ||
| PF04811 | 243 | Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: I | 91.38 | |
| PRK10997 | 487 | yieM hypothetical protein; Provisional | 90.17 | |
| PF01102 | 122 | Glycophorin_A: Glycophorin A; InterPro: IPR001195 | 89.69 | |
| smart00051 | 63 | DSL delta serrate ligand. | 88.89 | |
| COG4548 | 637 | NorD Nitric oxide reductase activation protein [In | 88.82 | |
| PF06697 | 278 | DUF1191: Protein of unknown function (DUF1191); In | 87.72 | |
| KOG1214|consensus | 1289 | 85.88 | ||
| PF03731 | 224 | Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; Inte | 85.41 | |
| KOG1984|consensus | 1007 | 84.02 | ||
| PF06305 | 68 | DUF1049: Protein of unknown function (DUF1049); In | 82.58 |
| >KOG1226|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-194 Score=1624.48 Aligned_cols=687 Identities=43% Similarity=0.786 Sum_probs=646.3
Q ss_pred CCCCCccccccCCCCC----CCCCCCcC-CCCCcccCCCCCCceecCCcceeEeecccccccccccCCcccCCCCCCCCC
Q psy12966 2 RICPVCPTYNSSEYGD----KKRCFQPS-LNADDNLEQCPEEYVFNPANVFSVLDNRHLAKASKYHHSQHSSSSSSSSSS 76 (741)
Q Consensus 2 ~~~p~CaWC~~~~f~~----~~RC~~~~-l~~~~~~~gC~~~~i~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 76 (741)
++||.||||++++|.. +.|||+++ |+ ++||+.++|++|+++++|++++||++.+
T Consensus 38 ~~~p~CaWC~~~~f~~~~p~~~RCd~~~~Ll----~~gC~~~~Ie~p~s~~~i~~d~~ls~~~----------------- 96 (783)
T KOG1226|consen 38 QAGPECAWCTQENFTGGSPRSERCDTRANLL----AKGCPPDDIENPRSSFDILEDKPLSDGG----------------- 96 (783)
T ss_pred hhCCCcccccccccCCCCCcccccccHHHHH----HcCCChhhccCCccceeecccCcccccC-----------------
Confidence 5799999999999942 45999999 99 8999999999999999999999998752
Q ss_pred CCCCCCCCCCCCCCceeecceeEEEEEeeCccEEEEEEEeccCCCcceeEEeecCCCChHHhHHHHHHHHHHHHHHHHhh
Q psy12966 77 GSFSSGGSASGHSEAVQISPQHVSLKLRINEAYRMVVDYAQAEDYPVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEV 156 (741)
Q Consensus 77 ~~~~~~~~~~~~~~~~qi~Pq~v~~~LR~G~~~~~~~~~~~~~~~pvDly~LmDlS~SM~ddl~~lk~l~~~l~~~l~~~ 156 (741)
.+.+++||+||++.|+||||++++|+|+|++|++||||||||||||+||+|||++||+||.+|+++|+++
T Consensus 97 ----------~~~~~~Qi~PQ~~~l~LRpg~~~~f~l~~r~a~~yPVDLYyLMDlS~SM~DDl~~l~~LG~~L~~~m~~l 166 (783)
T KOG1226|consen 97 ----------SGSDITQITPQELRLRLRPGEEQTFQLKVRQAEDYPVDLYYLMDLSYSMKDDLENLKSLGTDLAREMRKL 166 (783)
T ss_pred ----------cccceeEeccceEEEEecCCCceeEEEEEeeccCCCeeEEEEeecchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 1236899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceeEEeeEeecccccCccccCcccccCCCCC---CCCCcceeeeecCCccHHHHHHhccceeeccCCCCCcchHHHHH
Q psy12966 157 TSNFRLGFGSFVDKVVMPYVSMVPKNLLEPCAG---CAAPYGYHNVMSLSQDTSRFSAQVKGANVSGNLDGPEGGFDAIM 233 (741)
Q Consensus 157 t~~~r~GfgsFvDk~~~P~~~~~p~~l~~Pc~~---c~~~f~f~~~l~lT~d~~~F~~~v~~~~isgn~D~PE~~ldAl~ 233 (741)
|+||||||||||||+++||++|+|++|+|||+. |+|||+|||+|+||+|+++|.++|++++||||+|+|||||||||
T Consensus 167 T~nfrlGFGSFVDK~v~P~i~~~pekl~npc~~~~~C~ppfgfkhvLsLT~~~~~F~~~V~~q~ISgNlDaPEGGfDAim 246 (783)
T KOG1226|consen 167 TSNFRLGFGSFVDKTVSPYISTTPEKLRNPCPNYKNCAPPFGFKHVLSLTNDAEEFNEEVGKQRISGNLDAPEGGFDAIM 246 (783)
T ss_pred hccCCccccchhccccccccccCcHHhcCCCCCcccCCCCcccceeeecCCChHHHHHHHhhceeccCCCCCCchHHHHH
Confidence 999999999999999999999999999999954 99999999999999999999999999999999999999999999
Q ss_pred HHHhccccccccCCccEEEEEecCCCCCcCCCCCccceecCCCCcccccCCCCccccccCCCCCHHHHHHHHHhcCccEE
Q psy12966 234 QAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLI 313 (741)
Q Consensus 234 qa~vC~~~igWR~~a~rliv~~TDa~~H~agDg~L~Gi~~pnDg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~I 313 (741)
|||||+++||||++|+|||||+||+.||+|+|||||||+.||||+|||+.+|+|++|++|||||++||+++|.++||++|
T Consensus 247 QaavC~~~IGWR~~a~~lLVF~td~~~H~a~DgkLaGiv~pnDG~CHL~~~g~Yt~S~~qdyPSia~l~~kl~~~ni~~I 326 (783)
T KOG1226|consen 247 QAAVCTEKIGWRNDATRLLVFSTDAGFHFAGDGKLAGIVQPNDGQCHLDKNGEYTQSTTQDYPSIAQLAQKLADNNINTI 326 (783)
T ss_pred hhhhccccccccccceeEEEEEcCcceeeecccceeeEecCCCCccccCCCCccceecCCCCCcHHHHHHHHhhhcchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecchhhhHHHHhhcccCceeeeccCCcchHHHHHHHHhhhccceEEeeeCC-CCceEEEEEeecCCCCCCCCCCCCC
Q psy12966 314 FAVTAEQIGVYERLKTHIEGSSSGTLTNDSSNVVDLVKDQYNKISSSVEMKDTS-SSAVKVTYHSKCLNKDGPSKPTAKC 392 (741)
Q Consensus 314 favt~~~~~~Y~~l~~~i~gs~vg~L~~dSsNiv~lI~~aY~~i~s~v~l~~~~-~~~~~v~~~s~C~~~~~~~~~~~~C 392 (741)
||||++++++|++|+.+||+++||+|++|||||++||.+||++|+|+|+|++.+ |++|.++|++.|.++..+.++++.|
T Consensus 327 FAVt~~~~~~Y~~l~~lip~s~vg~l~~DSsNi~qLI~~ay~~l~s~v~l~~~~~p~gl~~~y~s~C~~g~~~~~~~~~c 406 (783)
T KOG1226|consen 327 FAVTKNSQSLYEELSNLIPGSAVGVLSEDSSNIVQLIIEAYNSLSSKVILEDENQPEGLSLSYTSSCSNGVSFPGKRRKC 406 (783)
T ss_pred HHHhhhhhhHHHhhhhhCCcccccccccchhhHHHHHHHHHHhccceEEEeecCCCCceeEEEeeecCCCCccCCccCCC
Confidence 999999999999999999999999999999999999999999999999999966 9999999999999998888766799
Q ss_pred CCcccCcEEEEEEEEEeccCCCCCcccceEEEEEecccceeEEEecccCCCccCCCCCCCCCCCCCCCCCCCeEEeCcee
Q psy12966 393 DGLKVGTVVHFEIDIEVTACPANRSEWMQTFYIYPVGIDETLRVDLEMQCECPCEVDGHPSFVRNSPNCSGFGTFKCGLC 472 (741)
Q Consensus 393 ~~v~~g~~V~F~v~v~~~~Cp~~~~~~~~~~~I~~~g~~e~l~v~l~~~C~C~Ce~~~~~~~~~~s~~Csg~G~c~cG~C 472 (741)
.||++|++|+|+|+++++.||.. .+.+.|+|+|+||+|++.|.|+.+|+|+|+.+ .++++..|+|||++.||+|
T Consensus 407 ~~i~~gd~v~f~v~~~~~~C~~~--~~~~~~~i~pvgf~e~l~v~v~~~C~C~C~~~----~e~~s~~C~g~G~~~CG~C 480 (783)
T KOG1226|consen 407 SGITIGDEVTFEVSVTAKKCPPE--DQKGSFIIRPVGFTETLEVIVQYNCECDCQDQ----GEPNSALCHGNGTFVCGQC 480 (783)
T ss_pred CCcccCceeEEEEecccccCCCc--cccceEEEccCCCCcceEEEeecccccccccc----CCCCccccCCCCcEEecce
Confidence 99999999999999999999933 33479999999999999999999999999998 5889999999999999999
Q ss_pred eeCCCccCCcccccCCCCCCc-CcccCccCCCCccccCCCceecCCCCcc-CCCCCceecCcccccee----ecCCCC--
Q psy12966 473 ECDQSHFGRRCECDAESSQGI-TSTGCKADANSTMECSGRGNCLCNQKSL-DNIVNVIISHVIVTTEC----CVLDLN-- 544 (741)
Q Consensus 473 ~C~~G~~G~~CeC~~~~~~~~-~~~~C~~~~~~~~~Csg~G~C~cG~C~C-~~~~~~~~G~~~~~Cec----C~~~~g-- 544 (741)
.|++||.|..|||+....++. ....|+..++ .++|||||.|+||+|+| +.....|+|+| ||| |+++.|
T Consensus 481 ~C~~G~~G~~CEC~~~~~ss~~~~~~Cr~~~~-~~vCSgrG~C~CGqC~C~~~~~~~i~G~f---CECDnfsC~r~~g~l 556 (783)
T KOG1226|consen 481 RCDEGWLGKKCECSTDELSSSEEEDKCRENSD-SPVCSGRGDCVCGQCVCHKPDNGKIYGKF---CECDNFSCERHKGVL 556 (783)
T ss_pred ecCCCCCCCcccCCccccCcHhHHhhccCCCC-CCCcCCCCcEeCCceEecCCCCCceeeee---eeccCcccccccCcc
Confidence 999999999999998775543 5678998877 57999999999999999 55555799999 999 999966
Q ss_pred --CceeeecCceEecCCcee-----ccccccCCCCccccCccccCCccccccccccccccccccCCCCCccc--CCCCC-
Q psy12966 545 --TVGACVASAIVKTAGLVQ-----RVTVAPLMTPVYLLREERCARARESVSAVCANVLKIAREDIPAGSAR--NARPV- 614 (741)
Q Consensus 545 --G~G~C~cg~C~C~~G~~G-----~~~~~~C~~~~~~~~~~~Csg~G~C~cG~C~~~~~C~~~~~~gy~G~--e~Cp~- 614 (741)
|||+|.||+|+|++||+| +.++++|+.++ | .+|||||+|.||+|+ | .+++|+|. |.||+
T Consensus 557 C~g~G~C~CG~CvC~~GwtG~~C~C~~std~C~~~~---G-~iCSGrG~C~Cg~C~----C---~~~~~sG~~CE~cptc 625 (783)
T KOG1226|consen 557 CGGHGRCECGRCVCNPGWTGSACNCPLSTDTCESSD---G-QICSGRGTCECGRCK----C---TDPPYSGEFCEKCPTC 625 (783)
T ss_pred cCCCCeEeCCcEEcCCCCccCCCCCCCCCccccCCC---C-ceeCCCceeeCCceE----c---CCCCcCcchhhcCCCC
Confidence 899999999999999999 67789999987 7 899999999999999 9 57779999 99999
Q ss_pred cCCCCCCCceeeecccccccccc------------cCcCCCC----CCCceeecCCCcEEEEEEEEcCCCcEEEEEeccC
Q psy12966 615 LEDVQEFKNCIQCQVLQDRTIVR------------GGNEAKD----ENLCVYFDEDECKFEYVYWYDAQGKIHLRAQQER 678 (741)
Q Consensus 615 ~~~C~~~~~Cv~C~~~~~g~~~~------------~v~~~~~----~~~C~~~~~d~C~~~f~y~~~~~~~~~i~v~~~~ 678 (741)
+++|.++++||+|+++++|+..+ .|++++. ...|+++|+++|+|+|+|..+..|+.+|+|++++
T Consensus 626 ~~~C~~~~~CveC~~~~~g~~~~~C~~~C~~~~~~~v~~~~~~~~~~~~C~~~~~~dc~~~f~y~~~~~g~~~l~v~~~~ 705 (783)
T KOG1226|consen 626 PDPCAENKSCVECQAFETGPVGDTCVEECSSFVVTLVEELPVLDDEVVHCKERDEDDCWFFFTYSDDASGKSTLHVREEK 705 (783)
T ss_pred CCcccccccchhhcccccccccchHHHHhhhhcchhhccccccCCccceeeeecCCCcEEEEEEEecCCCcEEEEEEecc
Confidence 88999999999999999997644 2344332 2589999999999999999777899999999999
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccCCCCCCCCC
Q psy12966 679 ECPPHVYILGLVLGVIGAIVLIGLAFLCLWKILTSIHDRREFAKFEKERMLAKWDTKLNSLIY 741 (741)
Q Consensus 679 ~Cp~~~~~~~Ivlgvi~~ivliGl~lLliwK~~~~i~DrrE~~kFekE~~~akw~~~~NPly~ 741 (741)
+||++|+||+|+||+|+|||||||+||+|||+|++|||||||||||+||++|||++. |||||
T Consensus 706 ~cp~~~~~~~i~lgvv~~ivligl~llliwkll~~~~DrrE~akFe~er~~a~w~~~-nPlyk 767 (783)
T KOG1226|consen 706 ECPPGPNILAIVLGVVAGIVLIGLALLLIWKLLTTIHDRREFAKFEKERLNAKWDTA-NPLYK 767 (783)
T ss_pred cCCCCCcEeeehHHHHHHHHHHHHHHHHHHHHhheecccHHhhhhhHHHHhhhhccC-CCcee
Confidence 999999999999999999999999999999999999999999999999999999996 99997
|
|
| >smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region) | Back alignment and domain information |
|---|
| >PF00362 Integrin_beta: Integrin, beta chain; InterPro: IPR002369 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ] | Back alignment and domain information |
|---|
| >KOG1226|consensus | Back alignment and domain information |
|---|
| >PF08725 Integrin_b_cyt: Integrin beta cytoplasmic domain; InterPro: IPR014836 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ] | Back alignment and domain information |
|---|
| >KOG1225|consensus | Back alignment and domain information |
|---|
| >PF07965 Integrin_B_tail: Integrin beta tail domain; InterPro: IPR012896 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ] | Back alignment and domain information |
|---|
| >KOG1225|consensus | Back alignment and domain information |
|---|
| >smart00327 VWA von Willebrand factor (vWF) type A domain | Back alignment and domain information |
|---|
| >cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain | Back alignment and domain information |
|---|
| >PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A | Back alignment and domain information |
|---|
| >cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity | Back alignment and domain information |
|---|
| >cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions | Back alignment and domain information |
|---|
| >cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins | Back alignment and domain information |
|---|
| >cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration | Back alignment and domain information |
|---|
| >cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions | Back alignment and domain information |
|---|
| >cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme | Back alignment and domain information |
|---|
| >cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell | Back alignment and domain information |
|---|
| >cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax | Back alignment and domain information |
|---|
| >PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma | Back alignment and domain information |
|---|
| >cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions | Back alignment and domain information |
|---|
| >PTZ00441 sporozoite surface protein 2 (SSP2); Provisional | Back alignment and domain information |
|---|
| >cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto) | Back alignment and domain information |
|---|
| >cd01477 vWA_F09G8-8_type VWA F09G8 | Back alignment and domain information |
|---|
| >cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions | Back alignment and domain information |
|---|
| >cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology | Back alignment and domain information |
|---|
| >cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation | Back alignment and domain information |
|---|
| >cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta | Back alignment and domain information |
|---|
| >cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin) | Back alignment and domain information |
|---|
| >PRK13685 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases | Back alignment and domain information |
|---|
| >PRK13406 bchD magnesium chelatase subunit D; Provisional | Back alignment and domain information |
|---|
| >cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins | Back alignment and domain information |
|---|
| >cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >PF11265 Med25_VWA: Mediator complex subunit 25 von Willebrand factor type A; InterPro: IPR021419 The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells | Back alignment and domain information |
|---|
| >cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >TIGR00868 hCaCC calcium-activated chloride channel protein 1 | Back alignment and domain information |
|---|
| >TIGR02442 Cob-chelat-sub cobaltochelatase subunit | Back alignment and domain information |
|---|
| >cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >PF13768 VWA_3: von Willebrand factor type A domain | Back alignment and domain information |
|---|
| >cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family | Back alignment and domain information |
|---|
| >PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins | Back alignment and domain information |
|---|
| >TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D | Back alignment and domain information |
|---|
| >TIGR03788 marine_srt_targ marine proteobacterial sortase target protein | Back alignment and domain information |
|---|
| >KOG0994|consensus | Back alignment and domain information |
|---|
| >cd01458 vWA_ku Ku70/Ku80 N-terminal domain | Back alignment and domain information |
|---|
| >cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins | Back alignment and domain information |
|---|
| >KOG4289|consensus | Back alignment and domain information |
|---|
| >KOG0994|consensus | Back alignment and domain information |
|---|
| >PLN00162 transport protein sec23; Provisional | Back alignment and domain information |
|---|
| >TIGR01651 CobT cobaltochelatase, CobT subunit | Back alignment and domain information |
|---|
| >KOG1219|consensus | Back alignment and domain information |
|---|
| >KOG1219|consensus | Back alignment and domain information |
|---|
| >PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain | Back alignment and domain information |
|---|
| >cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
|---|
| >COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
| >PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown | Back alignment and domain information |
|---|
| >PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts | Back alignment and domain information |
|---|
| >KOG4260|consensus | Back alignment and domain information |
|---|
| >cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
|---|
| >COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only] | Back alignment and domain information |
|---|
| >cd01468 trunk_domain trunk domain | Back alignment and domain information |
|---|
| >PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function | Back alignment and domain information |
|---|
| >KOG4289|consensus | Back alignment and domain information |
|---|
| >KOG2807|consensus | Back alignment and domain information |
|---|
| >PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex | Back alignment and domain information |
|---|
| >PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A | Back alignment and domain information |
|---|
| >smart00051 DSL delta serrate ligand | Back alignment and domain information |
|---|
| >KOG3637|consensus | Back alignment and domain information |
|---|
| >PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] | Back alignment and domain information |
|---|
| >PRK10997 yieM hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane | Back alignment and domain information |
|---|
| >smart00051 DSL delta serrate ligand | Back alignment and domain information |
|---|
| >COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function | Back alignment and domain information |
|---|
| >KOG1214|consensus | Back alignment and domain information |
|---|
| >PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway | Back alignment and domain information |
|---|
| >KOG1984|consensus | Back alignment and domain information |
|---|
| >PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 741 | ||||
| 4g1e_B | 738 | Crystal Structure Of Integrin Alpha V Beta 3 With C | 1e-96 | ||
| 3ije_B | 695 | Crystal Structure Of The Complete Integrin Alhavbet | 1e-96 | ||
| 1jv2_B | 692 | Crystal Structure Of The Extracellular Segment Of I | 1e-96 | ||
| 1jv2_B | 692 | Crystal Structure Of The Extracellular Segment Of I | 8e-05 | ||
| 3fcs_B | 690 | Structure Of Complete Ectodomain Of Integrin Aiibb3 | 1e-96 | ||
| 4g1m_B | 692 | Re-Refinement Of Alpha V Beta 3 Structure Length = | 1e-96 | ||
| 3v4p_B | 503 | Crystal Structure Of A4b7 Headpiece Complexed With | 4e-94 | ||
| 3t3m_B | 472 | A Novel High Affinity Integrin Alphaiibbeta3 Recept | 1e-93 | ||
| 3nid_B | 471 | The Closed Headpiece Of Integrin Alphaiib Beta3 And | 4e-93 | ||
| 3k6s_B | 687 | Structure Of Integrin Alphaxbeta2 Ectodomain Length | 6e-93 | ||
| 2vc2_B | 461 | Re-Refinement Of Integrin Alphaiibbeta3 Headpiece B | 5e-91 | ||
| 3vi3_B | 454 | Crystal Structure Of Alpha5beta1 Integrin Headpiece | 1e-90 | ||
| 1tye_B | 440 | Structural Basis For Allostery In Integrins And Bin | 1e-86 | ||
| 2iue_A | 212 | Pactolus I-Domain: Functional Switching Of The Ross | 2e-35 | ||
| 2p26_A | 280 | Structure Of The Phe2 And Phe3 Fragments Of The Int | 3e-15 | ||
| 2p28_B | 217 | Structure Of The Phe2 And Phe3 Fragments Of The Int | 2e-14 | ||
| 1yuk_B | 120 | The Crystal Structure Of The PsiHYBRID DOMAIN I-Egf | 9e-10 | ||
| 2kv9_B | 75 | Integrin Beta3 Subunit In A Disulfide Linked Alphai | 2e-07 | ||
| 2knc_B | 79 | Platelet Integrin Alfaiib-Beta3 Transmembrane-Cytop | 2e-07 | ||
| 3g9w_C | 52 | Crystal Structure Of Talin2 F2-f3 In Complex With T | 1e-06 | ||
| 1s4x_A | 67 | Nmr Structure Of The Integrin B3 Cytoplasmic Domain | 5e-06 | ||
| 2lje_A | 67 | Biphosphorylated (747py, 759py) Beta3 Integrin Cyto | 5e-06 | ||
| 2ljd_A | 67 | Monophosphorylated (747py) Beta3 Integrin Cytoplasm | 5e-06 | ||
| 1m8o_B | 47 | Platelet Integrin Alfaiib-Beta3 Cytoplasmic Domain | 5e-06 | ||
| 2l91_A | 43 | Structure Of The Integrin Beta3 (A711p,K716a) Trans | 1e-05 | ||
| 1kup_B | 25 | Solution Structure Of The Membrane Proximal Regions | 8e-05 | ||
| 2h7d_B | 34 | Solution Structure Of The Talin F3 Domain In Comple | 4e-04 |
| >pdb|4G1E|B Chain B, Crystal Structure Of Integrin Alpha V Beta 3 With Coil-Coiled Tag Length = 738 | Back alignment and structure |
|
| >pdb|3IJE|B Chain B, Crystal Structure Of The Complete Integrin Alhavbeta3 Ectodomain Plus An Alpha/beta Transmembrane Fragment Length = 695 | Back alignment and structure |
| >pdb|1JV2|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin Alphavbeta3 Length = 692 | Back alignment and structure |
| >pdb|1JV2|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin Alphavbeta3 Length = 692 | Back alignment and structure |
| >pdb|3FCS|B Chain B, Structure Of Complete Ectodomain Of Integrin Aiibb3 Length = 690 | Back alignment and structure |
| >pdb|4G1M|B Chain B, Re-Refinement Of Alpha V Beta 3 Structure Length = 692 | Back alignment and structure |
| >pdb|3V4P|B Chain B, Crystal Structure Of A4b7 Headpiece Complexed With Fab Act-1 Length = 503 | Back alignment and structure |
| >pdb|3T3M|B Chain B, A Novel High Affinity Integrin Alphaiibbeta3 Receptor Antagonist That Unexpectedly Displaces Mg2+ From The Beta3 Midas Length = 472 | Back alignment and structure |
| >pdb|3NID|B Chain B, The Closed Headpiece Of Integrin Alphaiib Beta3 And Its Complex With An Alpahiib Beta3 -Specific Antagonist That Does Not Induce Opening Length = 471 | Back alignment and structure |
| >pdb|3K6S|B Chain B, Structure Of Integrin Alphaxbeta2 Ectodomain Length = 687 | Back alignment and structure |
| >pdb|2VC2|B Chain B, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece Bound To Antagonist L-739758 Length = 461 | Back alignment and structure |
| >pdb|3VI3|B Chain B, Crystal Structure Of Alpha5beta1 Integrin Headpiece (Ligand-Free Form) Length = 454 | Back alignment and structure |
| >pdb|1TYE|B Chain B, Structural Basis For Allostery In Integrins And Binding Of Ligand- Mimetic Therapeutics To The Platelet Receptor For Fibrinogen Length = 440 | Back alignment and structure |
| >pdb|2IUE|A Chain A, Pactolus I-Domain: Functional Switching Of The Rossmann Fold Length = 212 | Back alignment and structure |
| >pdb|2P26|A Chain A, Structure Of The Phe2 And Phe3 Fragments Of The Integrin Beta2 Subunit Length = 280 | Back alignment and structure |
| >pdb|2P28|B Chain B, Structure Of The Phe2 And Phe3 Fragments Of The Integrin Beta2 Subunit Length = 217 | Back alignment and structure |
| >pdb|1YUK|B Chain B, The Crystal Structure Of The PsiHYBRID DOMAIN I-Egf1 Segment From The Human Integrin Beta2 At 1.8 Resolution Length = 120 | Back alignment and structure |
| >pdb|2KV9|B Chain B, Integrin Beta3 Subunit In A Disulfide Linked Alphaiib-Beta3 Cytosolic Domain Length = 75 | Back alignment and structure |
| >pdb|2KNC|B Chain B, Platelet Integrin Alfaiib-Beta3 Transmembrane-Cytoplasmic Heterocomplex Length = 79 | Back alignment and structure |
| >pdb|3G9W|C Chain C, Crystal Structure Of Talin2 F2-f3 In Complex With The Integrin Beta1d Cytoplasmic Tail Length = 52 | Back alignment and structure |
| >pdb|1S4X|A Chain A, Nmr Structure Of The Integrin B3 Cytoplasmic Domain In Dpc Micelles Length = 67 | Back alignment and structure |
| >pdb|2LJE|A Chain A, Biphosphorylated (747py, 759py) Beta3 Integrin Cytoplasmic Tail Under Membrane Mimetic Conditions Length = 67 | Back alignment and structure |
| >pdb|2LJD|A Chain A, Monophosphorylated (747py) Beta3 Integrin Cytoplasmic Tail Under Membrane Mimetic Conditions Length = 67 | Back alignment and structure |
| >pdb|1M8O|B Chain B, Platelet Integrin Alfaiib-Beta3 Cytoplasmic Domain Length = 47 | Back alignment and structure |
| >pdb|2L91|A Chain A, Structure Of The Integrin Beta3 (A711p,K716a) Transmembrane Segment Length = 43 | Back alignment and structure |
| >pdb|1KUP|B Chain B, Solution Structure Of The Membrane Proximal Regions Of Alpha-Iib And Beta-3 Integrins Length = 25 | Back alignment and structure |
| >pdb|2H7D|B Chain B, Solution Structure Of The Talin F3 Domain In Complex With A Chimeric Beta3 Integrin-Pip Kinase Peptide Length = 34 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Length = 690 | Back alignment and structure |
|---|
Score = 466 bits (1201), Expect = e-155
Identities = 194/508 (38%), Positives = 278/508 (54%), Gaps = 42/508 (8%)
Query: 17 DKKRCFQPSLNADDNLEQCPEEYVFNPANVFSVLDNRHLAKASKYHHSQHSSSSSSSSSS 76
RC + + C E + P + VL++R L
Sbjct: 34 GSPRCDLKE---NLLKDNCAPESIEFPVSEARVLEDRPL--------------------- 69
Query: 77 GSFSSGGSASGHSEAVQISPQHVSLKLRINEAYRMVVDYAQAEDYPVDLYYLMDLSNSMR 136
S + S+ Q+SPQ ++L+LR +++ + Q EDYPVD+YYLMDLS SM+
Sbjct: 70 ----SDKGSGDSSQVTQVSPQRIALRLRPDDSKNFSIQVRQVEDYPVDIYYLMDLSYSMK 125
Query: 137 DDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSM-VPKNLLEPCAG----CA 191
DD + LG +L+ M+++TSN R+GFG+FVDK V PY+ + P+ L PC C
Sbjct: 126 DDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCL 185
Query: 192 APYGYHNVMSLSQDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRL 251
+GY +V++L+ +RF+ +VK +VS N D PEGGFDAIMQA VC E+IGWR+ A L
Sbjct: 186 PMFGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHL 245
Query: 252 LVFSTDAEFHHAGDGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSIN 311
LVF+TDA+ H A DG+L GIV+PNDG CH+ + Y+ ST DYPS+ + K+ Q +IN
Sbjct: 246 LVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNIN 305
Query: 312 LIFAVTAEQIGVYERLKTHIEGSSSGTLTNDSSNVVDLVKDQYNKISSSVEMK-DTSSSA 370
LIFAVT + +Y+ I G++ G L+ DSSNV+ L+ D Y KI S VE++
Sbjct: 306 LIFAVTENVVNLYQNYSELIPGTTVGVLSMDSSNVLQLIVDAYGKIRSKVELEVRDLPEE 365
Query: 371 VKVTYHSKCLNKDGPSKPTAKCDGLKVGTVVHFEIDIEVTACPANRSEWMQTFYIYPVGI 430
+ +++++ CLN C GLK+G V F I+ +V CP E ++F I PVG
Sbjct: 366 LSLSFNATCLNN-EVIPGLKSCMGLKIGDTVSFSIEAKVRGCP---QEKEKSFTIKPVGF 421
Query: 431 DETLRVDLEMQCECPCEVDGHPSFVRNSPNCSGFGTFKCGLCECDQSHFGRRCECDAESS 490
++L V + C+C C+ P+ + +G GTF+CG+C C G +CEC E
Sbjct: 422 KDSLIVQVTFDCDCACQAQAEPN---SHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDY 478
Query: 491 QGITSTGCKADANSTMECSGRGNCLCNQ 518
+ C CS RG CLC Q
Sbjct: 479 RPSQQDECSPR-EGQPVCSQRGECLCGQ 505
|
| >3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Length = 690 | Back alignment and structure |
|---|
| >3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Length = 690 | Back alignment and structure |
|---|
| >3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B* Length = 503 | Back alignment and structure |
|---|
| >3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Length = 687 | Back alignment and structure |
|---|
| >3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Length = 687 | Back alignment and structure |
|---|
| >3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B* Length = 454 | Back alignment and structure |
|---|
| >3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B* Length = 472 | Back alignment and structure |
|---|
| >2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus} Length = 212 | Back alignment and structure |
|---|
| >2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A Length = 217 | Back alignment and structure |
|---|
| >2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B* 1yuk_A* 2p28_A* Length = 280 | Back alignment and structure |
|---|
| >2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens} Length = 79 | Back alignment and structure |
|---|
| >2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A Length = 43 | Back alignment and structure |
|---|
| >1s4x_A Integrin beta-3; cell adhesion; NMR {Homo sapiens} SCOP: j.60.1.1 PDB: 2ljd_A* 2lje_A* 2ljf_A* Length = 67 | Back alignment and structure |
|---|
| >2kv9_B Integrin beta-3; platelet glycoprotein IIIA, GPIIIA, C adhesion; NMR {Homo sapiens} Length = 75 | Back alignment and structure |
|---|
| >3g9w_C Integrin beta-1D; protein-protein complex, PH domain superfold, PTB domain, HE bundle, intrinsically unstructured, cell adhesion; 2.17A {Homo sapiens} PDB: 1kup_B 1kuz_B Length = 52 | Back alignment and structure |
|---|
| >1m8o_B Platele integrin BETA3 subunit: cytoplasmic domain; ALFA helix, platelet, membrane protein; NMR {Homo sapiens} SCOP: j.60.1.1 PDB: 2l1c_B* 2h7d_B* 2h7e_B* Length = 47 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 741 | |||
| 3fcs_B | 690 | Integrin beta-3; beta propeller, rossmann fold, EG | 100.0 | |
| 3k6s_B | 687 | Integrin beta-2; cell receptor, adhesion molecule, | 100.0 | |
| 3t3p_B | 472 | Integrin beta-3; integrin, cell adhesion, blood cl | 100.0 | |
| 3v4v_B | 503 | Integrin beta-7; cell adhesion, madcam-1, membrane | 100.0 | |
| 3vi3_B | 454 | Integrin beta-1; beta propeller fold, rossman fold | 100.0 | |
| 2iue_A | 212 | Pactolus I-domain; membrane protein, CD, ITC, limb | 100.0 | |
| 2p26_A | 280 | Integrin beta-2; hybrid domain, PSI domain, I-EGF | 100.0 | |
| 2p28_B | 217 | Integrin beta-2; hybrid domain, PSI domain, I-EGF | 100.0 | |
| 2knc_B | 79 | Integrin beta-3; transmembrane signaling, protein | 99.92 | |
| 1s4x_A | 67 | Integrin beta-3; cell adhesion; NMR {Homo sapiens} | 99.74 | |
| 2kv9_B | 75 | Integrin beta-3; platelet glycoprotein IIIA, GPIII | 99.64 | |
| 2k9j_B | 43 | Integrin beta-3; transmembrane complex, cell adhes | 99.63 | |
| 2p26_A | 280 | Integrin beta-2; hybrid domain, PSI domain, I-EGF | 99.61 | |
| 3k6s_B | 687 | Integrin beta-2; cell receptor, adhesion molecule, | 99.47 | |
| 3g9w_C | 52 | Integrin beta-1D; protein-protein complex, PH doma | 99.46 | |
| 3fcs_B | 690 | Integrin beta-3; beta propeller, rossmann fold, EG | 99.45 | |
| 1m8o_B | 47 | Platele integrin BETA3 subunit: cytoplasmic domain | 99.39 | |
| 2ygq_A | 324 | WIF-1, WNT inhibitory factor 1; signaling protein, | 99.12 | |
| 2p28_B | 217 | Integrin beta-2; hybrid domain, PSI domain, I-EGF | 99.1 | |
| 1mf7_A | 194 | Integrin alpha M; cell adhesion; 1.25A {Homo sapie | 99.03 | |
| 2ygq_A | 324 | WIF-1, WNT inhibitory factor 1; signaling protein, | 99.02 | |
| 1ijb_A | 202 | VON willebrand factor; dinucleotide-binding fold, | 99.01 | |
| 1atz_A | 189 | VON willebrand factor; collagen-binding, hemostasi | 99.0 | |
| 2xgg_A | 178 | Microneme protein 2; A/I domain, cell adhesion, hy | 98.99 | |
| 1n3y_A | 198 | Integrin alpha-X; alpha/beta rossmann fold, cell a | 98.95 | |
| 1v7p_C | 200 | Integrin alpha-2; snake venom, C-type lectin, anta | 98.94 | |
| 3ibs_A | 218 | Conserved hypothetical protein BATB; structural ge | 98.88 | |
| 4hqo_A | 266 | Sporozoite surface protein 2; malaria, gliding mot | 98.87 | |
| 4hqf_A | 281 | Thrombospondin-related anonymous protein, trap; ma | 98.85 | |
| 1q0p_A | 223 | Complement factor B; VON willebrand factor, MAC-1, | 98.83 | |
| 3n2n_F | 185 | Anthrax toxin receptor 1; rossmann fold; 1.80A {Ho | 98.83 | |
| 2vj2_A | 169 | Jagged-1; signalling, polymorphism, glycoprotein, | 98.83 | |
| 2odp_A | 509 | Complement C2; C3/C5 convertase, complement serin | 98.83 | |
| 1shu_X | 182 | Anthrax toxin receptor 2; alpha/beta rossmann fold | 98.8 | |
| 2b2x_A | 223 | Integrin alpha-1; computational design, antibody-a | 98.79 | |
| 1pt6_A | 213 | Integrin alpha-1; cell adhesion; 1.87A {Homo sapie | 98.79 | |
| 3hrz_D | 741 | Complement factor B; serine protease, glycosilated | 98.74 | |
| 4fx5_A | 464 | VON willebrand factor type A; structural genomics, | 98.73 | |
| 3zqk_A | 199 | VON willebrand factor; blood clotting, adamts-13, | 98.73 | |
| 1rrk_A | 497 | Complement factor B; BB, hydrolase; 2.00A {Homo sa | 98.7 | |
| 1mjn_A | 179 | Integrin alpha-L; rossmann fold, immune system; 1. | 98.59 | |
| 2vj2_A | 169 | Jagged-1; signalling, polymorphism, glycoprotein, | 98.56 | |
| 2x31_A | 189 | Magnesium-chelatase 60 kDa subunit; ligase, bacter | 98.51 | |
| 2gy5_A | 423 | Angiopoietin-1 receptor; ligand-binding domain, tr | 98.36 | |
| 2gy5_A | 423 | Angiopoietin-1 receptor; ligand-binding domain, tr | 98.25 | |
| 2jf1_T | 35 | Integrin beta-2 subunit; actin-binding, cell adhes | 98.2 | |
| 3k6s_A | 1095 | Integrin alpha-X; cell receptor, adhesion molecule | 98.19 | |
| 2ww8_A | 893 | RRGA, cell WALL surface anchor family protein; IGG | 98.18 | |
| 2x5n_A | 192 | SPRPN10, 26S proteasome regulatory subunit RPN10; | 98.12 | |
| 4b4t_W | 268 | RPN10, 26S proteasome regulatory subunit RPN10; hy | 98.01 | |
| 2vj3_A | 135 | Neurogenic locus notch homolog protein 1; transcri | 97.92 | |
| 4d90_A | 143 | EGF-like repeat and discoidin I-like domain-conta | 97.73 | |
| 3rag_A | 242 | Uncharacterized protein; structural genomics, PSI- | 97.63 | |
| 1z1y_A | 186 | Ookinete surface protein PVS25; four EGF-like doma | 97.53 | |
| 1klo_A | 162 | Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: | 97.44 | |
| 2vj3_A | 135 | Neurogenic locus notch homolog protein 1; transcri | 97.32 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 97.25 | |
| 1jey_B | 565 | KU80; double-strand DNA break repair, non-homologo | 96.97 | |
| 4aqs_A | 525 | Laminin subunit beta-1; cell adhesion; HET: NAG BM | 96.96 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 96.88 | |
| 1z1y_A | 186 | Ookinete surface protein PVS25; four EGF-like doma | 96.74 | |
| 2l8s_A | 54 | Integrin alpha-1; transmembrane region, detergent | 96.59 | |
| 4aqs_A | 525 | Laminin subunit beta-1; cell adhesion; HET: NAG BM | 96.49 | |
| 2knc_A | 54 | Integrin alpha-IIB; transmembrane signaling, prote | 96.33 | |
| 2k1a_A | 42 | Integrin alpha-IIB; single-PASS transmembrane segm | 96.23 | |
| 2bou_A | 143 | EGF-like module containing mucin-like hormone rece | 96.23 | |
| 1pcx_A | 810 | Protein transport protein SEC24; 2.50A {Saccharomy | 96.14 | |
| 4d90_A | 143 | EGF-like repeat and discoidin I-like domain-conta | 96.13 | |
| 1yo8_A | 634 | Thrombospondin-2; EGF, Ca(2+)-binding domains, lec | 96.06 | |
| 2ks1_B | 44 | Epidermal growth factor receptor; ERBB1, ERBB2, tr | 95.63 | |
| 2e26_A | 725 | Reelin, reeler protein; signaling protein; HET: NA | 95.51 | |
| 1jey_A | 609 | KU70; double-strand DNA break repair, non-homologo | 95.33 | |
| 1m2v_B | 926 | SEC24, protein transport protein SEC24, SEC24P, SE | 95.14 | |
| 2bou_A | 143 | EGF-like module containing mucin-like hormone rece | 95.02 | |
| 2y38_A | 403 | Laminin subunit alpha-5; structural protein, cell | 94.86 | |
| 2ygo_A | 188 | WIF-1, WNT inhibitory factor 1; signaling protein, | 94.69 | |
| 2e26_A | 725 | Reelin, reeler protein; signaling protein; HET: NA | 94.61 | |
| 1m2o_A | 768 | SEC23, protein transport protein SEC23, SEC23P; zi | 94.55 | |
| 3eh1_A | 751 | Protein transport protein SEC24B; copii coat prote | 94.48 | |
| 1klo_A | 162 | Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: | 94.12 | |
| 3zyj_B | 426 | Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA | 94.0 | |
| 1yvr_A | 538 | RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, | 93.74 | |
| 4aqt_A | 375 | Laminin subunit gamma-1; cell adhesion; HET: NAG B | 93.59 | |
| 2nut_A | 769 | Protein transport protein SEC23A; human copii SEC2 | 93.13 | |
| 2nvo_A | 535 | RO sixty-related protein, RSR; alpha helical repea | 92.95 | |
| 2l2t_A | 44 | Receptor tyrosine-protein kinase ERBB-4; transmemb | 92.77 | |
| 1aut_L | 114 | Activated protein C; serine proteinase, plasma cal | 92.4 | |
| 1yo8_A | 634 | Thrombospondin-2; EGF, Ca(2+)-binding domains, lec | 92.08 | |
| 2brq_C | 31 | Integrin beta-7 subunit; structural protein, cytos | 90.75 | |
| 2k1k_A | 38 | Ephrin type-A receptor 1; EPHA1, receptor tyrosine | 88.86 | |
| 2ddu_A | 387 | Reelin; beta-jelly-roll, signaling protein; 2.05A | 88.21 | |
| 4fbr_A | 267 | Lectin, myxobacterial hemagglutinin; beta-barrel, | 88.19 | |
| 4fbr_A | 267 | Lectin, myxobacterial hemagglutinin; beta-barrel, | 87.51 | |
| 2ddu_A | 387 | Reelin; beta-jelly-roll, signaling protein; 2.05A | 87.42 | |
| 3h5c_B | 317 | Vitamin K-dependent protein Z; protein Z-protein Z | 87.32 | |
| 2w86_A | 147 | Fibrillin-1, fibrillin1; phosphoprotein, EGF-like | 87.06 | |
| 1uzk_A | 162 | Fibrillin-1; glycoprotein, extra-cellular matrix, | 87.02 | |
| 4aqt_A | 375 | Laminin subunit gamma-1; cell adhesion; HET: NAG B | 86.17 | |
| 3eh2_A | 766 | Protein transport protein SEC24C; copii-coat prote | 85.87 | |
| 1dx5_I | 118 | Thrombomodulin; serine proteinase, EGF-like domain | 84.98 | |
| 3v4v_B | 503 | Integrin beta-7; cell adhesion, madcam-1, membrane | 84.91 | |
| 3efo_B | 770 | SEC24 related gene family, member D; copii, coat p | 82.84 | |
| 2y38_A | 403 | Laminin subunit alpha-5; structural protein, cell | 80.96 | |
| 3u7u_G | 55 | Neuregulin 1; signaling protein, transferase-trans | 80.49 | |
| 1x7a_L | 146 | Coagulation factor IX, light chain; inhibition, bl | 80.04 |
| >3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-147 Score=1282.04 Aligned_cols=630 Identities=36% Similarity=0.689 Sum_probs=567.4
Q ss_pred CCCCCccccccCCCCC-CCCCCCcC-CCCCcccCCCCCCceecCCcceeEeecccccccccccCCcccCCCCCCCCCCCC
Q psy12966 2 RICPVCPTYNSSEYGD-KKRCFQPS-LNADDNLEQCPEEYVFNPANVFSVLDNRHLAKASKYHHSQHSSSSSSSSSSGSF 79 (741)
Q Consensus 2 ~~~p~CaWC~~~~f~~-~~RC~~~~-l~~~~~~~gC~~~~i~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 79 (741)
+.+|.||||++++|+. ..|||+++ |+ ++||++++|+||+++++|++|+||+...+
T Consensus 18 ~~~p~CaWC~~~~f~~~~~RC~~~~~l~----~~gC~~~~i~~p~~~~~~~~~~pl~~~~~------------------- 74 (690)
T 3fcs_B 18 AVSPMCAWCSDEALPLGSPRCDLKENLL----KDNCAPESIEFPVSEARVLEDRPLSDKGS------------------- 74 (690)
T ss_dssp HHCTTCEEECCTTSCTTSCSEECHHHHH----HTTCCGGGEECCCCEEEEEECCCCCSBCC-------------------
T ss_pred CCCCCccccCCccCCCCCCCCCCHHHHh----HCCCCHHHeeCCCCceEEeecccCccccc-------------------
Confidence 4689999999999954 57999999 88 78999999999999999999999986420
Q ss_pred CCCCCCCCCCCceeecceeEEEEEeeCccEEEEEEEeccCCCcceeEEeecCCCChHHhHHHHHHHHHHHHHHHHhhcCc
Q psy12966 80 SSGGSASGHSEAVQISPQHVSLKLRINEAYRMVVDYAQAEDYPVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEVTSN 159 (741)
Q Consensus 80 ~~~~~~~~~~~~~qi~Pq~v~~~LR~G~~~~~~~~~~~~~~~pvDly~LmDlS~SM~ddl~~lk~l~~~l~~~l~~~t~~ 159 (741)
+ ...+++||+||+|+|+||||++++|+|+|+++++||||||||||+|+||+|||++||+||.+|+++|+++|++
T Consensus 75 --~----~~~~~~qi~Pq~~~~~Lr~g~~~~f~~~~~~~~~~pvDly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~~ 148 (690)
T 3fcs_B 75 --G----DSSQVTQVSPQRIALRLRPDDSKNFSIQVRQVEDYPVDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSN 148 (690)
T ss_dssp ----------CCCCEESCEEEEEECTTCEEEEEEEEECCBTCCEEEEEEEECSGGGHHHHHHTTTTTHHHHHHHHHHCSC
T ss_pred --c----ccCCCceecCceEEEEeccCCcEEEEEEEeccCCCCccEEEEecCCcchHHHHHHHHHHHHHHHHHHHhhCcC
Confidence 0 0135899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEeeEeecccccCccccCcccc-cCCC----CCCCCCcceeeeecCCccHHHHHHhccceeeccCCCCCcchHHHHHH
Q psy12966 160 FRLGFGSFVDKVVMPYVSMVPKNL-LEPC----AGCAAPYGYHNVMSLSQDTSRFSAQVKGANVSGNLDGPEGGFDAIMQ 234 (741)
Q Consensus 160 ~r~GfgsFvDk~~~P~~~~~p~~l-~~Pc----~~c~~~f~f~~~l~lT~d~~~F~~~v~~~~isgn~D~PE~~ldAl~q 234 (741)
+|||||+|||||++||++++|++| +||| ..|+|||+|||+|+||+|+++|+++|++++||||+|+|||+||||||
T Consensus 149 ~r~Gfgsf~Dk~~~P~~~~~p~~~~~~pc~~~~~~c~~~f~f~~~l~lt~~~~~f~~~v~~~~isgn~D~PE~g~dAl~q 228 (690)
T 3fcs_B 149 LRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQ 228 (690)
T ss_dssp EEEEEEEECCCSSTTTSCCCSTTTTTCTTSSSSSCCCCCCSEEEEEEEESCHHHHHHHHTTCCCCCCSSSSBCHHHHHHH
T ss_pred ceEEeEEeeccccCCccccChhhhccCCCcCCCCCCCCCccceeecccCCCHHHHHHHhhceeccCCCCCCchHHHHHHH
Confidence 999999999999999999999999 9999 47999999999999999999999999999999999999999999999
Q ss_pred HHhccccccccCCccEEEEEecCCCCCcCCCCCccceecCCCCcccccCCCCccccccCCCCCHHHHHHHHHhcCccEEE
Q psy12966 235 AIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIF 314 (741)
Q Consensus 235 a~vC~~~igWR~~a~rliv~~TDa~~H~agDg~L~Gi~~pnDg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~If 314 (741)
||||.++||||++|+|||||+|||+||+|||||||||++||||+|||+.+|+|++++++|||||+||+++|+++||+|||
T Consensus 229 a~~c~~~igWr~~a~rllv~~TDa~~H~agDg~l~gi~~pnd~~chl~~~~~y~~s~~~DypSi~ql~~~l~~~~i~~if 308 (690)
T 3fcs_B 229 ATVCDEKIGWRNDASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIF 308 (690)
T ss_dssp HHHCHHHHTCCSSSEEEEEEEESSCBCCTTGGGGGTCCSCCCCCCCBCTTCBBGGGGTSCCCCHHHHHHHHHHTTCEEEE
T ss_pred HhhcccccCCCCCceEEEEEECCCccccCCCccccceecCCCcceeecCCCccccccccCCCCHHHHHHHHHHcCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecchhhhHHHHhhcccCceeeeccCCcchHHHHHHHHhhhccceEEeeeCC-CCceEEEEEeecCCCCCCCCCCCCCC
Q psy12966 315 AVTAEQIGVYERLKTHIEGSSSGTLTNDSSNVVDLVKDQYNKISSSVEMKDTS-SSAVKVTYHSKCLNKDGPSKPTAKCD 393 (741)
Q Consensus 315 avt~~~~~~Y~~l~~~i~gs~vg~L~~dSsNiv~lI~~aY~~i~s~v~l~~~~-~~~~~v~~~s~C~~~~~~~~~~~~C~ 393 (741)
|||+.++++|++|+++|+++++|+|++||+||++||++||++|+|+|+|++.+ |++|+|+|++.|+++....++ ++|+
T Consensus 309 avt~~~~~~y~~l~~~i~~s~v~~l~~dSsni~~li~~~y~~i~s~v~l~~~~~p~~~~v~~~s~C~~~~~~~~~-~~C~ 387 (690)
T 3fcs_B 309 AVTENVVNLYQNYSELIPGTTVGVLSMDSSNVLQLIVDAYGKIRSKVELEVRDLPEELSLSFNATCLNNEVIPGL-KSCM 387 (690)
T ss_dssp EEEGGGHHHHHHHHHHSTTCEEEEECTTCTTHHHHHHHHHHHHTTCEEEEEESCCTTEEEEEEEECSTTCEEETC-CEEC
T ss_pred EEeCCchhhHHHHHhhcCCceeeeeccccHHHHHHHHHHHHhhhcceeeeccCCCCcceEEEEeecCCCCcccCC-Cccc
Confidence 99999999999999999999999999999999999999999999999999877 999999999999987655443 5899
Q ss_pred CcccCcEEEEEEEEEeccCCCCCcccceEEEEEecccceeEEEecccCCCccCCCCCCCCCCCCCCCCC-CCeEEeCcee
Q psy12966 394 GLKVGTVVHFEIDIEVTACPANRSEWMQTFYIYPVGIDETLRVDLEMQCECPCEVDGHPSFVRNSPNCS-GFGTFKCGLC 472 (741)
Q Consensus 394 ~v~~g~~V~F~v~v~~~~Cp~~~~~~~~~~~I~~~g~~e~l~v~l~~~C~C~Ce~~~~~~~~~~s~~Cs-g~G~c~cG~C 472 (741)
||++|++|+|+|+|++++||... .++|.|+|+||+|+|+|+|+++|+|+|... .-.|+..|+ ++|.|.+|.|
T Consensus 388 ~v~~g~~v~F~v~v~~~~Cp~~~---~~~~~i~p~G~~e~l~v~v~~~C~C~C~~~----pc~n~~~C~~g~G~~~~G~C 460 (690)
T 3fcs_B 388 GLKIGDTVSFSIEAKVRGCPQEK---EKSFTIKPVGFKDSLIVQVTFDCDCACQAQ----AEPNSHRCNNGNGTFECGVC 460 (690)
T ss_dssp SCCTTCEEEEEEEEEECSCCSSS---EEEEEEEETTCSCCEEEEEEECCSCGGGTT----CCTTCTTTTTTSEEEETTEE
T ss_pred ccccCCeEEEEEEEEeecCCCCC---ceEEEEeecCCccceeeecccccccCCcCC----CCCCCCcccCCCCeEeCCce
Confidence 99999999999999999999432 479999999999999999999999999976 466888999 9999999999
Q ss_pred eeCCCccCCcccccCCCCCCcCcccCccCCCCccccCCCceecCCCCccC-CCCCceecCcccccee----ecCCCC---
Q psy12966 473 ECDQSHFGRRCECDAESSQGITSTGCKADANSTMECSGRGNCLCNQKSLD-NIVNVIISHVIVTTEC----CVLDLN--- 544 (741)
Q Consensus 473 ~C~~G~~G~~CeC~~~~~~~~~~~~C~~~~~~~~~Csg~G~C~cG~C~C~-~~~~~~~G~~~~~Cec----C~~~~g--- 544 (741)
.|.+||+|..|+|+.+.........|...++ ...|+++|+|++|+|.|. .+..+|+|.+ ||+ |+...+
T Consensus 461 ~C~~Gy~G~~Ce~~~~~~~~~~~~~C~~~~~-~~~Cs~~G~C~~g~C~C~~~~~~Gy~G~~---Ce~~~~~C~~~~~~~C 536 (690)
T 3fcs_B 461 RCGPGWLGSQCECSEEDYRPSQQDECSPREG-QPVCSQRGECLCGQCVCHSSDFGKITGKY---CECDDFSCVRYKGEMC 536 (690)
T ss_dssp EECTTCCSSSSCCSCC------CCCCSSSSS-SCGGGGSEEECSSSEEECCCSSCCCBSTT---SCBCSSCCCBSSSSBG
T ss_pred EeCCCccCCceeeccCccCCccCCcCCCCCC-CCCCCCCCEEECCeeEeecCCCCCeeCCC---cCcccCcCcCCCCCCC
Confidence 9999999999999764332223345876554 468999999999999995 3334899999 997 986433
Q ss_pred -CceeeecCceEecCCcee-ccc----cccCCCCccccCccccCCccccccccccccccccccCCCCCccc--CCCCC-c
Q psy12966 545 -TVGACVASAIVKTAGLVQ-RVT----VAPLMTPVYLLREERCARARESVSAVCANVLKIAREDIPAGSAR--NARPV-L 615 (741)
Q Consensus 545 -G~G~C~cg~C~C~~G~~G-~~~----~~~C~~~~~~~~~~~Csg~G~C~cG~C~~~~~C~~~~~~gy~G~--e~Cp~-~ 615 (741)
+||+|.++.|.|.+||+| .|. ...|.... + ..|+++|+|++|+|. | ..+||+|. +.|+. +
T Consensus 537 ~~~G~C~~g~C~C~~Gy~G~~CeC~~~~~~C~~~~---g-~~C~~~G~C~~g~C~----C---~~~Gy~G~~Ce~C~~C~ 605 (690)
T 3fcs_B 537 SGHGQCSCGDCLCDSDWTGYYCNCTTRTDTCMSSN---G-LLCSGRGKCECGSCV----C---IQPGSYGDTCEKCPTCP 605 (690)
T ss_dssp GGSEEEETTEEEECTTEESSSSCEECCCTTTBCTT---S-SBTSSSCEEETTEEE----C---CSTTCBSTTSCBCTTSC
T ss_pred CCCCEecCCeeECcCCCcCCCCccCCCCCcccCCC---C-CCCCCCCEEeCCEEE----C---CCCCccCCCcCcCCCCC
Confidence 799999999999999999 343 56786533 3 689999999999999 9 46899999 77877 7
Q ss_pred CCCCCCCceeeecccccccc--cc-----------cCcCCCC----CCCceeecCCCcEEEEEEEEcCCCcEEEEEeccC
Q psy12966 616 EDVQEFKNCIQCQVLQDRTI--VR-----------GGNEAKD----ENLCVYFDEDECKFEYVYWYDAQGKIHLRAQQER 678 (741)
Q Consensus 616 ~~C~~~~~Cv~C~~~~~g~~--~~-----------~v~~~~~----~~~C~~~~~d~C~~~f~y~~~~~~~~~i~v~~~~ 678 (741)
++|..++.|++|+.+.+|++ .+ +|++++. +.+|+++|+|+|+|+|+|..++++++.|+|++++
T Consensus 606 ~~C~~~g~Cv~C~~g~tG~~C~~~~C~~~C~~~~~~v~~~~~~~~~~~~C~~~d~~~C~~~f~~~~~~~~~~~~~v~~~~ 685 (690)
T 3fcs_B 606 DACTFKKECVECKKFDRGALHDENTCNRYCRDEIESVKELKDTGKDAVNCTYKNEDDCVVRFQYYEDSSGKSILYVVEEP 685 (690)
T ss_dssp CTTTSCCGGGTTTTTCCSSSSSSSCSTTTCCCEEECCCCCSCSSSSSCEEEEECTTSEEEEEECBCSSSCBCEEECCSSC
T ss_pred CCCCCCCCcccCCCCCccCCCCccccccccCCccEEeeecccCCCccCCCccCCCCCeEEEEEEEECCCCcEEEEEeccC
Confidence 89999999999999999984 11 3455432 2579999999999999998777889999999999
Q ss_pred CCCCC
Q psy12966 679 ECPPH 683 (741)
Q Consensus 679 ~Cp~~ 683 (741)
+||++
T Consensus 686 ~Cp~~ 690 (690)
T 3fcs_B 686 ECCKG 690 (690)
T ss_dssp EECCC
T ss_pred CCCCC
Confidence 99874
|
| >3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* | Back alignment and structure |
|---|
| >3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B* | Back alignment and structure |
|---|
| >3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B* | Back alignment and structure |
|---|
| >3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B* | Back alignment and structure |
|---|
| >2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B* 1yuk_A* 2p28_A* | Back alignment and structure |
|---|
| >2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A | Back alignment and structure |
|---|
| >2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1s4x_A Integrin beta-3; cell adhesion; NMR {Homo sapiens} SCOP: j.60.1.1 PDB: 2ljd_A* 2lje_A* 2ljf_A* | Back alignment and structure |
|---|
| >2kv9_B Integrin beta-3; platelet glycoprotein IIIA, GPIIIA, C adhesion; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A | Back alignment and structure |
|---|
| >2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B* 1yuk_A* 2p28_A* | Back alignment and structure |
|---|
| >3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* | Back alignment and structure |
|---|
| >3g9w_C Integrin beta-1D; protein-protein complex, PH domain superfold, PTB domain, HE bundle, intrinsically unstructured, cell adhesion; 2.17A {Homo sapiens} PDB: 1kup_B 1kuz_B | Back alignment and structure |
|---|
| >3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* | Back alignment and structure |
|---|
| >1m8o_B Platele integrin BETA3 subunit: cytoplasmic domain; ALFA helix, platelet, membrane protein; NMR {Homo sapiens} SCOP: j.60.1.1 PDB: 2l1c_B* 2h7d_B* 2h7e_B* | Back alignment and structure |
|---|
| >2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} | Back alignment and structure |
|---|
| >2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A | Back alignment and structure |
|---|
| >1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G | Back alignment and structure |
|---|
| >2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} | Back alignment and structure |
|---|
| >1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C | Back alignment and structure |
|---|
| >1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A | Back alignment and structure |
|---|
| >2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii} | Back alignment and structure |
|---|
| >1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A | Back alignment and structure |
|---|
| >3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A* | Back alignment and structure |
|---|
| >4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A | Back alignment and structure |
|---|
| >1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A | Back alignment and structure |
|---|
| >2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* | Back alignment and structure |
|---|
| >1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y* | Back alignment and structure |
|---|
| >2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A | Back alignment and structure |
|---|
| >3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* | Back alignment and structure |
|---|
| >4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila} | Back alignment and structure |
|---|
| >3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A* | Back alignment and structure |
|---|
| >1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A | Back alignment and structure |
|---|
| >1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ... | Back alignment and structure |
|---|
| >2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A | Back alignment and structure |
|---|
| >2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
| >2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* | Back alignment and structure |
|---|
| >2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* | Back alignment and structure |
|---|
| >2jf1_T Integrin beta-2 subunit; actin-binding, cell adhesion, transmembrane, acetylation, polymorphism, cytoskeleton, glycoprotein, filamin, complex; 2.2A {Homo sapiens} | Back alignment and structure |
|---|
| >3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A* | Back alignment and structure |
|---|
| >2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
| >2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* | Back alignment and structure |
|---|
| >4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
| >1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A | Back alignment and structure |
|---|
| >1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A | Back alignment and structure |
|---|
| >2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* | Back alignment and structure |
|---|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
| >1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B* | Back alignment and structure |
|---|
| >4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus} | Back alignment and structure |
|---|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
| >1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A | Back alignment and structure |
|---|
| >2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus} | Back alignment and structure |
|---|
| >2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A | Back alignment and structure |
|---|
| >2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A | Back alignment and structure |
|---|
| >1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A | Back alignment and structure |
|---|
| >4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A* | Back alignment and structure |
|---|
| >2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus musculus} PDB: 3a7q_A* | Back alignment and structure |
|---|
| >1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 | Back alignment and structure |
|---|
| >2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A | Back alignment and structure |
|---|
| >2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
| >2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A* | Back alignment and structure |
|---|
| >2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus musculus} PDB: 3a7q_A* | Back alignment and structure |
|---|
| >1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* | Back alignment and structure |
|---|
| >3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B | Back alignment and structure |
|---|
| >1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A | Back alignment and structure |
|---|
| >3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
| >1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A | Back alignment and structure |
|---|
| >4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus} | Back alignment and structure |
|---|
| >2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A | Back alignment and structure |
|---|
| >2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans} | Back alignment and structure |
|---|
| >2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* | Back alignment and structure |
|---|
| >1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A* | Back alignment and structure |
|---|
| >2brq_C Integrin beta-7 subunit; structural protein, cytoskeleton/complex, actin-binding, cytoskeleton, immunoglobulin like, cell adhesion; HET: GSH; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A | Back alignment and structure |
|---|
| >2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus} | Back alignment and structure |
|---|
| >4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A* | Back alignment and structure |
|---|
| >4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A* | Back alignment and structure |
|---|
| >2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus} | Back alignment and structure |
|---|
| >3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} | Back alignment and structure |
|---|
| >2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A | Back alignment and structure |
|---|
| >4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus} | Back alignment and structure |
|---|
| >3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} | Back alignment and structure |
|---|
| >1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A | Back alignment and structure |
|---|
| >3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B* | Back alignment and structure |
|---|
| >3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B | Back alignment and structure |
|---|
| >2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
| >3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens} | Back alignment and structure |
|---|
| >1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 741 | ||||
| d1tyeb2 | 248 | c.62.1.1 (B:107-354) Integrin beta A domain {Human | 7e-99 | |
| d1tyeb1 | 135 | b.1.15.1 (B:58-106,B:355-440) Hybrid domain of int | 2e-21 | |
| d1tyeb1 | 135 | b.1.15.1 (B:58-106,B:355-440) Hybrid domain of int | 5e-05 | |
| d1jv2b3 | 85 | d.200.1.1 (B:606-690) Integrin beta tail domain {H | 8e-12 |
| >d1tyeb2 c.62.1.1 (B:107-354) Integrin beta A domain {Human (Homo sapiens) [TaxId: 9606]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: vWA-like superfamily: vWA-like family: Integrin A (or I) domain domain: Integrin beta A domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 303 bits (777), Expect = 7e-99
Identities = 125/246 (50%), Positives = 168/246 (68%), Gaps = 5/246 (2%)
Query: 119 EDYPVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSM 178
EDYPVD+YYLMDLS SM+DD + LG +L+ M+++TSN R+GFG+FVDK V PY+ +
Sbjct: 2 EDYPVDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYI 61
Query: 179 -VPKNLLEPC----AGCAAPYGYHNVMSLSQDTSRFSAQVKGANVSGNLDGPEGGFDAIM 233
P+ L PC C +GY +V++L+ +RF+ +VK +VS N D PEGGFDAIM
Sbjct: 62 SPPEALENPCYDMKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIM 121
Query: 234 QAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIVKPNDGLCHMDRNGMYTHSTVQ 293
QA VC E+IGWR+ A LLVF+TDA+ H A DG+L GIV+PNDG CH+ + Y+ ST
Sbjct: 122 QATVCDEKIGWRNDASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTM 181
Query: 294 DYPSISQINMKVKQNSINLIFAVTAEQIGVYERLKTHIEGSSSGTLTNDSSNVVDLVKDQ 353
DYPS+ + K+ Q +INLIFAVT + +Y+ I G++ G L+ DSSNV+ L+ D
Sbjct: 182 DYPSLGLMTEKLSQKNINLIFAVTENVVNLYQNYSELIPGTTVGVLSMDSSNVLQLIVDA 241
Query: 354 YNKISS 359
Y KI S
Sbjct: 242 YGKIRS 247
|
| >d1tyeb1 b.1.15.1 (B:58-106,B:355-440) Hybrid domain of integrin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 135 | Back information, alignment and structure |
|---|
| >d1tyeb1 b.1.15.1 (B:58-106,B:355-440) Hybrid domain of integrin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 135 | Back information, alignment and structure |
|---|
| >d1jv2b3 d.200.1.1 (B:606-690) Integrin beta tail domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 741 | |||
| d1tyeb2 | 248 | Integrin beta A domain {Human (Homo sapiens) [TaxI | 100.0 | |
| d1tyeb1 | 135 | Hybrid domain of integrin beta {Human (Homo sapien | 99.95 | |
| d1jv2b3 | 85 | Integrin beta tail domain {Human (Homo sapiens) [T | 99.34 | |
| d1shux_ | 181 | Capillary morphogenesis protein 2 domain {Human (H | 99.06 | |
| d1atza_ | 184 | von Willebrand factor A3 domain, vWA3 {Human (Homo | 99.04 | |
| d1ijba_ | 202 | von Willebrand factor A1 domain, vWA1 {Human (Homo | 98.94 | |
| d1pt6a_ | 192 | Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId | 98.92 | |
| d1mjna_ | 179 | Integrin CD11a/CD18 (Leukocyte function associated | 98.82 | |
| d1n3ya_ | 189 | Integrin alpha-x beta2 {Human (Homo sapiens) [TaxI | 98.82 | |
| d1tyeb3 | 57 | Integrin beta-3 {Human (Homo sapiens) [TaxId: 9606 | 98.75 | |
| d1mf7a_ | 194 | Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha sub | 98.75 | |
| d1v7pc_ | 193 | Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId | 98.73 | |
| d1q0pa_ | 209 | Complement factor B domain {Human (Homo sapiens) [ | 98.59 | |
| d1jv2b5 | 43 | Integrin beta EGF-like domains {Human (Homo sapien | 98.3 | |
| d1jv2b4 | 31 | Integrin beta EGF-like domains {Human (Homo sapien | 98.12 | |
| d1jv2b5 | 43 | Integrin beta EGF-like domains {Human (Homo sapien | 97.95 | |
| d1jeyb2 | 236 | Ku80 subunit N-terminal domain {Human (Homo sapien | 97.92 | |
| d1jeya2 | 220 | Ku70 subunit N-terminal domain {Human (Homo sapien | 97.82 | |
| d1jv2b4 | 31 | Integrin beta EGF-like domains {Human (Homo sapien | 97.65 | |
| d1l3ya_ | 41 | Integrin beta EGF-like domains {Human (Homo sapien | 97.12 | |
| d1l3ya_ | 41 | Integrin beta EGF-like domains {Human (Homo sapien | 96.4 | |
| d1yvra2 | 174 | 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African c | 95.94 | |
| d1pd0a3 | 252 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 95.94 | |
| d2qtva3 | 271 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 91.77 | |
| d2vj3a2 | 39 | Neurogenic locus notch homolog protein 1, Notch1 { | 89.73 | |
| d1g1ta2 | 39 | E-selectin, EGF-domain {Human (Homo sapiens) [TaxI | 89.69 | |
| d1g1sa2 | 40 | E-selectin, EGF-domain {Human (Homo sapiens) [TaxI | 89.59 | |
| d2c4fl1 | 37 | Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} | 89.32 | |
| d2vj3a1 | 42 | Neurogenic locus notch homolog protein 1, Notch1 { | 89.22 | |
| d1xkba1 | 39 | Factor X, N-terminal module {Human (Homo sapiens) | 89.09 | |
| d2vj3a3 | 35 | Neurogenic locus notch homolog protein 1, Notch1 { | 88.83 | |
| d1edmb_ | 39 | Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606 | 88.83 | |
| d1tpga1 | 41 | Plasminogen activator (tissue-type), t-PA {Human ( | 82.88 | |
| d1autl1 | 48 | Activated protein c (autoprothrombin IIa) {Human ( | 82.77 |
| >d1tyeb2 c.62.1.1 (B:107-354) Integrin beta A domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: vWA-like superfamily: vWA-like family: Integrin A (or I) domain domain: Integrin beta A domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.6e-64 Score=519.59 Aligned_cols=243 Identities=51% Similarity=0.905 Sum_probs=236.6
Q ss_pred cCCCcceeEEeecCCCChHHhHHHHHHHHHHHHHHHHhhcCceeEEeeEeecccccCccccCc-ccccCCC----CCCCC
Q psy12966 118 AEDYPVDLYYLMDLSNSMRDDKDRLSALGDQLSASMQEVTSNFRLGFGSFVDKVVMPYVSMVP-KNLLEPC----AGCAA 192 (741)
Q Consensus 118 ~~~~pvDly~LmDlS~SM~ddl~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p-~~l~~Pc----~~c~~ 192 (741)
.|+||||||||||+|+||+++|+++|+.+.+|+++|++++.++|+|||+|+|++..||+++.| +.+.+|| ..|.+
T Consensus 1 ~~~yPvDl~Fv~D~TgSM~~~i~~vk~~i~~i~~~l~~~~~~~r~g~~~f~D~~~~p~~~~~~~~~~~~p~~~~~~~~~~ 80 (248)
T d1tyeb2 1 VEDYPVDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLP 80 (248)
T ss_dssp CSCCCEEEEEEEECSGGGGGGHHHHHHHHHHHHHHHHHHCSCEEEEEEEECCCSSTTTSCCCSGGGGTCGGGGGTSCCCC
T ss_pred CCCCCeeEEEEEECCcCHHHHHHHHHHHHHHHHHHHHhhCcCceEEEEEEEecccCccccccchhhccCccccccccccc
Confidence 379999999999999999999999999999999999999999999999999999999998875 5678999 47999
Q ss_pred CcceeeeecCCccHHHHHHhccceeeccCCCCCcchHHHHHHHHhccccccccCCccEEEEEecCCCCCcCCCCCcccee
Q psy12966 193 PYGYHNVMSLSQDTSRFSAQVKGANVSGNLDGPEGGFDAIMQAIVCKEEIGWRDRARRLLVFSTDAEFHHAGDGKLGGIV 272 (741)
Q Consensus 193 ~f~f~~~l~lT~d~~~F~~~v~~~~isgn~D~PE~~ldAl~qa~vC~~~igWR~~a~rliv~~TDa~~H~agDg~L~Gi~ 272 (741)
+|+|+++++||+|.++|.+.|+++.++||+|.||++++||+||++|.++|+||++|+|+|||+|||+||.++||+|+||+
T Consensus 81 ~f~~~~~~~~t~d~~~f~~~l~~~~~~GggD~pE~~~~Al~~a~~~~~~i~Wr~~a~r~viliTDA~~H~~~d~~l~g~~ 160 (248)
T d1tyeb2 81 MFGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIALDGRLAGIV 160 (248)
T ss_dssp CCSEEEEEEEESCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCTTSEEEEEEEESSCBCCTTGGGGGTCC
T ss_pred cccceecCCCCCCHHHHHHHHhheecccCCCCcchHHHHHHHHHHHhhhCCCCCCccEEEEEECCCCccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccCCCCccccccCCCCCHHHHHHHHHhcCccEEEEEecchhhhHHHHhhcccCceeeeccCCcchHHHHHHH
Q psy12966 273 KPNDGLCHMDRNGMYTHSTVQDYPSISQINMKVKQNSINLIFAVTAEQIGVYERLKTHIEGSSSGTLTNDSSNVVDLVKD 352 (741)
Q Consensus 273 ~pnDg~Chl~~~~~Y~~s~~~DYPSv~ql~~~l~e~~I~~Ifavt~~~~~~Y~~l~~~i~gs~vg~L~~dSsNiv~lI~~ 352 (741)
.|||++||+++++.|..++.+||||++||+++|++++|+||||||++.++.|++|+++++|+.+++|++|||||++||++
T Consensus 161 ~~~d~~~~~~~~~~~~~~~~~dyps~~ql~~~l~~~~i~~ifavt~~~~~~Y~~l~~~~~g~~~~~l~~dssNi~~lI~~ 240 (248)
T d1tyeb2 161 QPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTENVVNLYQNYSELIPGTTVGVLSMDSSNVLQLIVD 240 (248)
T ss_dssp SCCCCCCCBCTTSBBGGGGTSCCCCHHHHHHHHHHTTEEEEEEECGGGHHHHHHHHHTSTTCEEEECSSCCHHHHHHHHH
T ss_pred ccCCCccccCCCCcccccccccCCCHHHHHHHHHHhCcEEEEEECchhhHHHHHHHHhcCCcEEEEecccchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhccce
Q psy12966 353 QYNKISSS 360 (741)
Q Consensus 353 aY~~i~s~ 360 (741)
||++|+|+
T Consensus 241 ~y~~i~~~ 248 (248)
T d1tyeb2 241 AYGKIRSK 248 (248)
T ss_dssp HHHTCCEE
T ss_pred HHHHHhCC
Confidence 99999985
|
| >d1tyeb1 b.1.15.1 (B:58-106,B:355-440) Hybrid domain of integrin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jv2b3 d.200.1.1 (B:606-690) Integrin beta tail domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1tyeb3 g.16.2.1 (B:1-57) Integrin beta-3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jv2b4 g.3.11.6 (B:532-562) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jv2b4 g.3.11.6 (B:532-562) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1l3ya_ g.3.11.6 (A:) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1l3ya_ g.3.11.6 (A:) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African clawed frog (Xenopus laevis) [TaxId: 8355]} | Back information, alignment and structure |
|---|
| >d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
| >d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|