Psyllid ID: psy13409
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 330 | 2.2.26 [Sep-21-2011] | |||||||
| Q8TC12 | 318 | Retinol dehydrogenase 11 | yes | N/A | 0.784 | 0.814 | 0.430 | 2e-58 | |
| Q9QYF1 | 316 | Retinol dehydrogenase 11 | yes | N/A | 0.796 | 0.832 | 0.434 | 6e-58 | |
| Q96NR8 | 316 | Retinol dehydrogenase 12 | no | N/A | 0.784 | 0.819 | 0.424 | 1e-55 | |
| P59837 | 316 | Retinol dehydrogenase 12 | no | N/A | 0.784 | 0.819 | 0.414 | 2e-54 | |
| Q8BYK4 | 316 | Retinol dehydrogenase 12 | no | N/A | 0.784 | 0.819 | 0.414 | 5e-53 | |
| Q9HBH5 | 336 | Retinol dehydrogenase 14 | no | N/A | 0.769 | 0.755 | 0.392 | 2e-51 | |
| Q8NBN7 | 331 | Retinol dehydrogenase 13 | no | N/A | 0.812 | 0.809 | 0.403 | 8e-51 | |
| Q9ERI6 | 334 | Retinol dehydrogenase 14 | no | N/A | 0.769 | 0.760 | 0.402 | 1e-50 | |
| Q8CEE7 | 334 | Retinol dehydrogenase 13 | no | N/A | 0.790 | 0.781 | 0.404 | 2e-49 | |
| Q6RVV4 | 316 | Short-chain dehydrogenase | N/A | N/A | 0.806 | 0.841 | 0.357 | 7e-40 |
| >sp|Q8TC12|RDH11_HUMAN Retinol dehydrogenase 11 OS=Homo sapiens GN=RDH11 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 226 bits (577), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 139/323 (43%), Positives = 187/323 (57%), Gaps = 64/323 (19%)
Query: 2 FLFSGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIR 61
L SG CT+ +L GK +VTG+NTGIGK TA ELA+RGARV +ACR +EK E A +I+
Sbjct: 27 MLSSGVCTSTVQLPGKVVVVTGANTGIGKETAKELAQRGARVYLACRDVEKGELVAKEIQ 86
Query: 62 TSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGY 121
T+ + +V++R+LDLS KS+R A+ L E +H+LINNAGVMMCP T DG+
Sbjct: 87 TTTGN----QQVLVRKLDLSDTKSIRAFAKGFLAEEKHLHVLINNAGVMMCPYSKTADGF 142
Query: 122 ELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATG 181
E+ NHLGH+L T LLL ++ +SAP+RI+N+SSLAH G +HF ++ EK Y+A
Sbjct: 143 EMHIGVNHLGHFLLTHLLLEKLKESAPSRIVNVSSLAHHL--GRIHFHNLQGEKFYNAGL 200
Query: 182 AYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTN 241
AY SKLANILFT ELA+RL+
Sbjct: 201 AYCHSKLANILFTQELARRLK--------------------------------------- 221
Query: 242 HYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQ 301
G+ +T TY+VHPG V +EL RH S + WL+ FIK+P Q
Sbjct: 222 -----------GSGVT---TYSVHPGTVQSELVRH-SSFMRWMWWLFS----FFIKTPQQ 262
Query: 302 GAQTTLYCALDKKCERETGLYYA 324
GAQT+L+CAL + E +G +++
Sbjct: 263 GAQTSLHCALTEGLEILSGNHFS 285
|
Exhibits an oxidoreductive catalytic activity towards retinoids. Most efficient as an NADPH-dependent retinal reductase. Displays high activity towards 9-cis and all-trans-retinol. Also involved in the metabolism of short-chain aldehydes. No steroid dehydrogenase activity detected. Homo sapiens (taxid: 9606) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 0EC: 0 |
| >sp|Q9QYF1|RDH11_MOUSE Retinol dehydrogenase 11 OS=Mus musculus GN=Rdh11 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 224 bits (571), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 142/327 (43%), Positives = 189/327 (57%), Gaps = 64/327 (19%)
Query: 2 FLFSGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIR 61
L SG CT++ +L GK AIVTG+NTGIGK TA +LA+RGARV +ACR ++K E AA +I+
Sbjct: 24 MLSSGVCTSNVQLPGKVAIVTGANTGIGKETAKDLAQRGARVYLACRDVDKGELAAREIQ 83
Query: 62 TSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGY 121
V +V +R+LDL+ KS+R A++ L E +HLLINNAGVMMCP T DG+
Sbjct: 84 A----VTGNSQVFVRKLDLADTKSIRAFAKDFLAEEKHLHLLINNAGVMMCPYSKTADGF 139
Query: 122 ELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATG 181
E+ NHLGH+L T LLL ++ +SAP+RI+NLSSL H G +HF ++ EK YSA
Sbjct: 140 EMHIGVNHLGHFLLTHLLLEKLKESAPSRIVNLSSLGHHLG--RIHFHNLQGEKFYSAGL 197
Query: 182 AYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTN 241
AY SKLANILFT ELA KR
Sbjct: 198 AYCHSKLANILFTKELA-----------------------KRLKG--------------- 219
Query: 242 HYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQ 301
+ V TY+VHPG V +EL+R + SI+ WL+Q + +FIK+P +
Sbjct: 220 ---------------SGVTTYSVHPGTVHSELTR-YSSIMR---WLWQ-LFFVFIKTPQE 259
Query: 302 GAQTTLYCALDKKCERETGLYYAKADL 328
GAQT+LYCAL + E +G +++ L
Sbjct: 260 GAQTSLYCALTEGLESLSGSHFSDCQL 286
|
Exhibits an oxidoreductive catalytic activity towards retinoids. Most efficient as an NADPH-dependent all-trans-retinal reductase. Also involved in the metabolism of short-chain aldehydes. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 0 EC: 0 |
| >sp|Q96NR8|RDH12_HUMAN Retinol dehydrogenase 12 OS=Homo sapiens GN=RDH12 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 216 bits (551), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 137/323 (42%), Positives = 178/323 (55%), Gaps = 64/323 (19%)
Query: 2 FLFSGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIR 61
F G C + +L GK ++TG+NTGIGK TA ELA RGARV +ACR + K E+AA +IR
Sbjct: 25 FFAGGVCRTNVQLPGKVVVITGANTGIGKETARELASRGARVYIACRDVLKGESAASEIR 84
Query: 62 TSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGY 121
K+ +V++R+LDLS KS+R A+ L E +H+LINNAGVMMCP T DG+
Sbjct: 85 VDTKN----SQVLVRKLDLSDTKSIRAFAEGFLAEEKQLHILINNAGVMMCPYSKTADGF 140
Query: 122 ELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATG 181
E NHLGH+L T LLL R+ SAPAR++N+SS+AH G + F D+ EK YS
Sbjct: 141 ETHLGVNHLGHFLLTYLLLERLKVSAPARVVNVSSVAHH--IGKIPFHDLQSEKRYSRGF 198
Query: 182 AYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTN 241
AY SKLAN+LFT ELAKRLQ
Sbjct: 199 AYCHSKLANVLFTRELAKRLQ--------------------------------------- 219
Query: 242 HYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQ 301
G +T TYAVHPGVV +EL RH + L R+ F+K+ +
Sbjct: 220 -----------GTGVT---TYAVHPGVVRSELVRHSSLLC-----LLWRLFSPFVKTARE 260
Query: 302 GAQTTLYCALDKKCERETGLYYA 324
GAQT+L+CAL + E +G Y++
Sbjct: 261 GAQTSLHCALAEGLEPLSGKYFS 283
|
Exhibits an oxidoreductive catalytic activity towards retinoids. Most efficient as an NADPH-dependent retinal reductase. Displays high activity toward 9-cis and all-trans-retinol. Also involved in the metabolism of short-chain aldehydes. No steroid dehydrogenase activity detected. Might be the key enzyme in the formation of 11-cis-retinal from 11-cis-retinol during regeneration of the cone visual pigments. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|P59837|RDH12_BOVIN Retinol dehydrogenase 12 OS=Bos taurus GN=RDH12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 213 bits (541), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 134/323 (41%), Positives = 182/323 (56%), Gaps = 64/323 (19%)
Query: 2 FLFSGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIR 61
F G C D +L GK ++TG+NTGIGK TA ELA+RGARV +ACR + K E+AA +I+
Sbjct: 25 FFAGGVCRTDVQLFGKVVVITGANTGIGKETARELARRGARVYIACRDVLKGESAASEIQ 84
Query: 62 TSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGY 121
K+ +V++R+LDLS KS+R A+ L E +H+LINNAGVM+CP T DG+
Sbjct: 85 ADTKN----SQVLVRKLDLSDTKSIRAFAEGFLAEEKQLHILINNAGVMLCPYSKTADGF 140
Query: 122 ELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATG 181
E A NHLGH+L T LLL R+ +SAPAR++NLSS+AH G + F D+ +K Y+
Sbjct: 141 ETHLAVNHLGHFLLTHLLLGRLKESAPARVVNLSSVAHHLGK--IRFHDLQGDKYYNLGF 198
Query: 182 AYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTN 241
AY SKLAN+LFT ELAKRL+
Sbjct: 199 AYCHSKLANVLFTRELAKRLK--------------------------------------- 219
Query: 242 HYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQ 301
G +T TYAVHPG+V ++L RH S + W R+ F+K+ +
Sbjct: 220 -----------GTGVT---TYAVHPGIVRSKLVRH--SFLLCLLW---RLFSPFLKTTWE 260
Query: 302 GAQTTLYCALDKKCERETGLYYA 324
GAQT+L+CAL + E +G Y++
Sbjct: 261 GAQTSLHCALAEGLEPLSGKYFS 283
|
Exhibits an oxidoreductive catalytic activity towards retinoids. Most efficient as an NADPH-dependent retinal reductase. Displays high activity toward 9-cis and all-trans-retinol. Also involved in the metabolism of short-chain aldehydes. No steroid dehydrogenase activity detected. Might be the key enzyme in the formation of 11-cis-retinal from 11-cis-retinol during regeneration of the cone visual pigments. Bos taurus (taxid: 9913) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8BYK4|RDH12_MOUSE Retinol dehydrogenase 12 OS=Mus musculus GN=Rdh12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 208 bits (529), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 134/323 (41%), Positives = 174/323 (53%), Gaps = 64/323 (19%)
Query: 2 FLFSGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIR 61
F G CT + ++ GK ++TG+NTGIGK TA ELA+RGARV +ACR + K E+AA +IR
Sbjct: 25 FFAGGVCTTNVQIPGKVVVITGANTGIGKETARELARRGARVYIACRDVLKGESAASEIR 84
Query: 62 TSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGY 121
K+ +V++R+LDLS KS+R A+ L E +H+LINNAGVMMCP T DG+
Sbjct: 85 ADTKN----SQVLVRKLDLSDTKSIRAFAERFLAEEKKLHILINNAGVMMCPYSKTTDGF 140
Query: 122 ELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATG 181
E F NHLGH+L T LLL R+ +SAPAR++NLSS+AH G + F D+ +K Y +
Sbjct: 141 ETHFGVNHLGHFLLTYLLLERLKESAPARVVNLSSIAHL--IGKIRFHDLQGQKRYCSAF 198
Query: 182 AYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTN 241
AYG SKLAN+LFT ELAKRLQ Y+ P +L R S L LL
Sbjct: 199 AYGHSKLANLLFTRELAKRLQGTGVTAYAVH-PGVVLSEITRNSYLLCLLWR-------- 249
Query: 242 HYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQ 301
LF P F KS Q
Sbjct: 250 ------LFSP-------------------------------------------FFKSTSQ 260
Query: 302 GAQTTLYCALDKKCERETGLYYA 324
GAQT+L+CAL + E +G Y++
Sbjct: 261 GAQTSLHCALAEDLEPLSGKYFS 283
|
Exhibits an oxidoreductive catalytic activity towards retinoids. Most efficient as an NADPH-dependent retinal reductase. Displays high activity toward 9-cis and all-trans-retinol. Also involved in the metabolism of short-chain aldehydes. No steroid dehydrogenase activity detected. Might be the key enzyme in the formation of 11-cis-retinal from 11-cis-retinol during regeneration of the cone visual pigments. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9HBH5|RDH14_HUMAN Retinol dehydrogenase 14 OS=Homo sapiens GN=RDH14 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 202 bits (515), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 126/321 (39%), Positives = 177/321 (55%), Gaps = 67/321 (20%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKD------- 66
+ GKT ++TG+N+G+G+ TA EL + GARVIM CR +AE AA +R L+
Sbjct: 41 MHGKTVLITGANSGLGRATAAELLRLGARVIMGCRDRARAEEAAGQLRRELRQAAECGPE 100
Query: 67 --VKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQ 124
V GE+++R+LDL+SL+SVR QE+L E + +LINNAG+ CP TEDG+E+Q
Sbjct: 101 PGVSGVGELIVRELDLASLRSVRAFCQEMLQEEPRLDVLINNAGIFQCPYMKTEDGFEMQ 160
Query: 125 FATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYG 184
F NHLGH+L T LLL + SAP+RI+ +SS + +GD ++F+D+N E+ Y+ + Y
Sbjct: 161 FGVNHLGHFLLTNLLLGLLKSSAPSRIVVVSSKLYKYGD--INFDDLNSEQSYNKSFCYS 218
Query: 185 RSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYC 244
RSKLANILFT ELA+RL+
Sbjct: 219 RSKLANILFTRELARRLE------------------------------------------ 236
Query: 245 KNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIP-GTAWLYQRVGGLFIKSPLQGA 303
G N+T VN +HPG+V T L RH IP L+ V F K+P++GA
Sbjct: 237 --------GTNVT-VNV--LHPGIVRTNLGRHIH--IPLLVKPLFNLVSWAFFKTPVEGA 283
Query: 304 QTTLYCALDKKCERETGLYYA 324
QT++Y A + E +G Y+
Sbjct: 284 QTSIYLASSPEVEGVSGRYFG 304
|
Exhibits an oxidoreductive catalytic activity towards retinoids. Most efficient as an NADPH-dependent retinal reductase. Displays high activity toward 9-cis and all-trans-retinol. No steroid dehydrogenase activity detected. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8NBN7|RDH13_HUMAN Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 201 bits (510), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 136/337 (40%), Positives = 186/337 (55%), Gaps = 69/337 (20%)
Query: 2 FLFSGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIR 61
++ G C + + GKT IVTG+NTGIGK TA ELA+RG +I+ACR +EK E AA DIR
Sbjct: 24 YVTGGACPSKATIPGKTVIVTGANTGIGKQTALELARRGGNIILACRDMEKCEAAAKDIR 83
Query: 62 TSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGY 121
+ V R LDL+SLKS+R+ A +I++ E + +LINNAGVM CP TEDG+
Sbjct: 84 GETLN----HHVNARHLDLASLKSIREFAAKIIEEEERVDILINNAGVMRCPHWTTEDGF 139
Query: 122 ELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLE-KGYSAT 180
E+QF NHLGH+L T LLL ++ SAP+RIINLSSLAH G + F+D+N + + Y+
Sbjct: 140 EMQFGVNHLGHFLLTNLLLDKLKASAPSRIINLSSLAHV--AGHIDFDDLNWQTRKYNTK 197
Query: 181 GAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPT 240
AY +SKLA +LFT EL++RLQ
Sbjct: 198 AAYCQSKLAIVLFTKELSRRLQ-------------------------------------- 219
Query: 241 NHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLF---IK 297
G+ +T VN A+HPGV TEL RH + I G+ + +G +F +K
Sbjct: 220 ------------GSGVT-VN--ALHPGVARTELGRH--TGIHGSTFSSTTLGPIFWLLVK 262
Query: 298 SPLQGAQTTLYCALDKKCERETGLYY----AKADLPQ 330
SP AQ + Y A+ ++ +G Y+ KA P+
Sbjct: 263 SPELAAQPSTYLAVAEELADVSGKYFDGLKQKAPAPE 299
|
Does not exhibit retinol dehydrogenase (RDH) activity in vitro. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9ERI6|RDH14_MOUSE Retinol dehydrogenase 14 OS=Mus musculus GN=Rdh14 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 200 bits (509), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 128/318 (40%), Positives = 176/318 (55%), Gaps = 64/318 (20%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG-- 71
+ GKT ++TG+N+G+G+ TA EL + GARVIM CR +AE AA +R L AG
Sbjct: 42 MHGKTVLITGANSGLGRATAAELLRLGARVIMGCRDRARAEEAAGQLRQELCQAGGAGPD 101
Query: 72 ----EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFAT 127
++V+++LDL+SL+SVR QE+L E + +LINNAGV CP TEDG+E+QF
Sbjct: 102 GTDGQLVVKELDLASLRSVRAFCQELLQEEPRLDVLINNAGVFHCPYTKTEDGFEMQFGV 161
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
NHLGH+L T LLL + SAP+RI+ +SS + +G+ ++FED+N E+ Y+ + Y RSK
Sbjct: 162 NHLGHFLLTNLLLGLLKSSAPSRIVVVSSKLYKYGE--INFEDLNSEQSYNKSFCYSRSK 219
Query: 188 LANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247
LANILFT ELA+RL+
Sbjct: 220 LANILFTRELARRLE--------------------------------------------- 234
Query: 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAW-LYQRVGGLFIKSPLQGAQTT 306
G N+T VN +HPG+V T L RH IP A L+ V F K+PL+GAQT+
Sbjct: 235 -----GTNVT-VNV--LHPGIVRTNLGRHIH--IPLLARPLFNLVSWAFFKTPLEGAQTS 284
Query: 307 LYCALDKKCERETGLYYA 324
+Y A E +G Y+
Sbjct: 285 IYLACSPDVEGVSGRYFG 302
|
Exhibits an oxidoreductive catalytic activity towards retinoids. Most efficient as an NADPH-dependent retinal reductase. Displays high activity toward 9-cis and all-trans-retinol. No steroid dehydrogenase activity detected. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8CEE7|RDH13_MOUSE Retinol dehydrogenase 13 OS=Mus musculus GN=Rdh13 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 196 bits (498), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 132/326 (40%), Positives = 177/326 (54%), Gaps = 65/326 (19%)
Query: 2 FLFSGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIR 61
++ G C + + GKT IVTG+NTGIGK TA ELAKRG VI+ACR +EK E AA DIR
Sbjct: 24 YVAGGACPSKATIPGKTVIVTGANTGIGKQTALELAKRGGNVILACRDMEKCEVAAKDIR 83
Query: 62 TSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGY 121
+ + V +LDL+SLKS+R+ A++++ E + +L+NNA VM CP TEDG+
Sbjct: 84 GETLNPR----VRAERLDLASLKSIREFARKVIKEEERVDILVNNAAVMRCPHWTTEDGF 139
Query: 122 ELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLE-KGYSAT 180
E+QF N+LGH+L T LLL ++ SAP+RIINLSSLAH G + FED+N + K Y
Sbjct: 140 EMQFGVNYLGHFLLTNLLLDKLKASAPSRIINLSSLAHV--AGHIDFEDLNWQMKKYDTK 197
Query: 181 GAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPT 240
AY +SKLA +LFT EL+ RLQ
Sbjct: 198 AAYCQSKLAVVLFTKELSHRLQ-------------------------------------- 219
Query: 241 NHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRH---FDSIIPGTAWLYQRVGGLFIK 297
G+ +T VN A+HPGV TEL RH +S G ++ L K
Sbjct: 220 ------------GSGVT-VN--ALHPGVARTELGRHTGMHNSAFSG--FMLGPFFWLLFK 262
Query: 298 SPLQGAQTTLYCALDKKCERETGLYY 323
SP AQ + Y A+ ++ E +G Y+
Sbjct: 263 SPQLAAQPSTYLAVAEELENVSGKYF 288
|
Does not exhibit retinol dehydrogenase (RDH) activity in vitro. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q6RVV4|TIC32_PEA Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum GN=TIC32 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 164 bits (416), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 120/336 (35%), Positives = 171/336 (50%), Gaps = 70/336 (20%)
Query: 4 FSGKCTADT-----RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAAD 58
FSG TA+ G TAIVTG+++GIG T LA RGA VIM R++ A+ D
Sbjct: 13 FSGSSTAEQVTHGIDATGLTAIVTGASSGIGAETTRVLALRGAHVIMGVRNMVAAKDVKD 72
Query: 59 DIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTE 118
I LKD+ A +V +LDLSSL SV+K A E + +++LINNAG+M CP +L++
Sbjct: 73 TI---LKDIPSA-KVDAIELDLSSLDSVKKFASEFNSSGRPLNILINNAGIMACPFKLSK 128
Query: 119 DGYELQFATNHLGHYLFTLLLLPRIIKSA-----PARIINLSSLAHTWG-DGSMHFEDIN 172
D ELQFATNH+GH+L T LLL + K+ RI+N++S AH + + F+ IN
Sbjct: 129 DNIELQFATNHIGHFLLTNLLLDTMKKTTRESKKEGRIVNVASEAHRFAYPEGIRFDKIN 188
Query: 173 LEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLC 232
+ Y+ AYG+SKLAN+L +L K L+
Sbjct: 189 DQSSYNNWRAYGQSKLANVLHANQLTKHLK------------------------------ 218
Query: 233 DANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVG 292
G NIT ++HPG + T L RH +S + G L +G
Sbjct: 219 ------------------EDGVNIT---ANSLHPGTIVTNLFRH-NSAVNG---LINVIG 253
Query: 293 GLFIKSPLQGAQTTLYCALDKKCERETGLYYAKADL 328
L +K+ QGA TT Y AL + + +G Y++ +++
Sbjct: 254 KLVLKNVQQGAATTCYVALHPQVKGVSGEYFSDSNV 289
|
Involved in protein precursor import into chloroplasts. Part of the redox regulon consisting of TIC32, TIC 55 and TIC62. Has a NADPH-dependent dehydrogenase activity, but only after preincubation with lipids. Pisum sativum (taxid: 3888) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 330 | ||||||
| 193654837 | 319 | PREDICTED: retinol dehydrogenase 11-like | 0.818 | 0.846 | 0.521 | 6e-89 | |
| 270014891 | 309 | hypothetical protein TcasGA2_TC010879 [T | 0.812 | 0.867 | 0.510 | 1e-79 | |
| 357621794 | 320 | hypothetical protein KGM_04472 [Danaus p | 0.824 | 0.85 | 0.490 | 2e-78 | |
| 189233927 | 304 | PREDICTED: similar to Retinol dehydrogen | 0.796 | 0.865 | 0.501 | 2e-76 | |
| 345488546 | 330 | PREDICTED: retinol dehydrogenase 11-like | 0.818 | 0.818 | 0.478 | 4e-72 | |
| 332375719 | 313 | unknown [Dendroctonus ponderosae] | 0.827 | 0.872 | 0.466 | 6e-72 | |
| 350537621 | 317 | uncharacterized protein LOC100166388 [Ac | 0.806 | 0.839 | 0.461 | 6e-72 | |
| 193582347 | 316 | PREDICTED: retinol dehydrogenase 12-like | 0.806 | 0.841 | 0.464 | 6e-72 | |
| 239791006 | 316 | ACYPI002894 [Acyrthosiphon pisum] | 0.806 | 0.841 | 0.461 | 1e-71 | |
| 193582345 | 317 | PREDICTED: retinol dehydrogenase 11-like | 0.806 | 0.839 | 0.455 | 9e-71 |
| >gi|193654837|ref|XP_001951546.1| PREDICTED: retinol dehydrogenase 11-like isoform 1 [Acyrthosiphon pisum] gi|328702842|ref|XP_003242022.1| PREDICTED: retinol dehydrogenase 11-like isoform 2 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 333 bits (855), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 169/324 (52%), Positives = 209/324 (64%), Gaps = 54/324 (16%)
Query: 2 FLFSGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIR 61
+ +CT+ RLDGKT +VTG NTGIGK TA E KRGARVIMACRS + + A + I+
Sbjct: 3 YFLPNRCTSTVRLDGKTVVVTGCNTGIGKETATEFYKRGARVIMACRSASRTQDAIESIK 62
Query: 62 TSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGY 121
+ + GE+V + L+LS L SVRKCA+EIL E I +L+NNAG+MMCP+ L+E+G
Sbjct: 63 NQTEGDNNVGELVFKHLELSFLASVRKCAKEILHTEKRIDILVNNAGIMMCPKTLSENGI 122
Query: 122 ELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATG 181
EL ATNHLGH+LFTLLLLPRI+KSAPARIIN++SLAH WGD MHF+DINL+K Y+ +G
Sbjct: 123 ELHLATNHLGHFLFTLLLLPRILKSAPARIINVTSLAHKWGDQKMHFDDINLDKDYTPSG 182
Query: 182 AYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTN 241
AYGRSKLANILFT ELAKRL
Sbjct: 183 AYGRSKLANILFTVELAKRL---------------------------------------- 202
Query: 242 HYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFD-SIIPGTAWLYQRVGGLFIKSPL 300
N T V YAV+PG+V TELSR+ D +I PG +WLY + +K+P
Sbjct: 203 -------------NGTGVTVYAVNPGIVHTELSRYVDQTIFPGASWLYNSFTKIAVKTPQ 249
Query: 301 QGAQTTLYCALDKKCERETGLYYA 324
QGAQTTL+CALD+KC E+GLYY+
Sbjct: 250 QGAQTTLHCALDEKCAGESGLYYS 273
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|270014891|gb|EFA11339.1| hypothetical protein TcasGA2_TC010879 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 302 bits (773), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 166/325 (51%), Positives = 210/325 (64%), Gaps = 57/325 (17%)
Query: 1 MFLFSGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDI 60
M LFSGKC + RLDGKTA+VTG+NTGIGK T + +RGARVI+ACR+L+KA A +DI
Sbjct: 1 MGLFSGKCVSKARLDGKTAVVTGANTGIGKETVKDFFQRGARVIVACRNLDKANQAVEDI 60
Query: 61 RTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDG 120
+ D ++ GE+++ QLDL+SLKSVR CA+ IL+ E I LLINNAGVMMCP TEDG
Sbjct: 61 KKEFSDGENLGELMVTQLDLTSLKSVRNCAKVILETEKRIDLLINNAGVMMCPEGRTEDG 120
Query: 121 YELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEK-GYSA 179
+E+QF TNHLGH+L TLLLLP+I +S PARI+N+SS+AH + G + FED+N +K YS+
Sbjct: 121 FEMQFGTNHLGHFLLTLLLLPKICQSTPARIVNVSSVAHKY--GCIDFEDLNWQKRKYSS 178
Query: 180 TGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTP 239
GAY +SKLANILFT EL +RL
Sbjct: 179 LGAYQQSKLANILFTKELVRRL-------------------------------------- 200
Query: 240 TNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSP 299
AN+T VN Y++HPGV+ TEL RH D + WL+ R+ IK+P
Sbjct: 201 ------------AEANVTGVNVYSLHPGVIRTELGRHLDYRL---RWLW-RIFSFLIKTP 244
Query: 300 LQGAQTTLYCALDKKCERETGLYYA 324
QGAQTT+YCA+D+KC ETGLYYA
Sbjct: 245 DQGAQTTIYCAVDEKCANETGLYYA 269
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|357621794|gb|EHJ73506.1| hypothetical protein KGM_04472 [Danaus plexippus] | Back alignment and taxonomy information |
|---|
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 160/326 (49%), Positives = 210/326 (64%), Gaps = 54/326 (16%)
Query: 1 MFLFSGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDI 60
M LFSG+C ++ +L GKTAI+TG NTGIGK T + KRGA+VIMACR++ KAE A +DI
Sbjct: 1 MPLFSGRCYSNAKLLGKTAIITGCNTGIGKETVRDFYKRGAKVIMACRNINKAEEAKEDI 60
Query: 61 RTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDG 120
+ KD+ D G++VI + DLSSLKSVR+ +++IL++E I++L+NNAGVMMCP++LTEDG
Sbjct: 61 VQTCKDLPDKGDIVIEKCDLSSLKSVREFSKKILESEPQINILVNNAGVMMCPKELTEDG 120
Query: 121 YELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEK-GYSA 179
+ELQF TNHL H+L T+LLLP+I S PARIIN+SS AHT + M+ +DIN +K YS
Sbjct: 121 FELQFGTNHLAHFLLTMLLLPKIKDSTPARIINVSSRAHTRFN--MNLDDINFDKRSYSP 178
Query: 180 TGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTP 239
AY +SKLAN+LF ELA RL+ +
Sbjct: 179 FEAYSQSKLANVLFARELANRLKAH----------------------------------- 203
Query: 240 TNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSII-PGTAWLYQRVGGLFIKS 298
NI VNTY++HPGV+ TEL RH D I+ G+ L + F+KS
Sbjct: 204 ---------------NIQGVNTYSLHPGVIKTELGRHLDKILFKGSRRLIGILTYPFMKS 248
Query: 299 PLQGAQTTLYCALDKKCERETGLYYA 324
P GAQTT+YCA+D+KC ETGLYY+
Sbjct: 249 PELGAQTTIYCAVDEKCANETGLYYS 274
|
Source: Danaus plexippus Species: Danaus plexippus Genus: Danaus Family: Nymphalidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|189233927|ref|XP_973517.2| PREDICTED: similar to Retinol dehydrogenase 13 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 163/325 (50%), Positives = 207/325 (63%), Gaps = 62/325 (19%)
Query: 1 MFLFSGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDI 60
M LFSGKC + RLDGKTA+VTG+NTGIGK T + +RGARVI+ACR+L+KA A +DI
Sbjct: 1 MGLFSGKCVSKARLDGKTAVVTGANTGIGKETVKDFFQRGARVIVACRNLDKANQAVEDI 60
Query: 61 RTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDG 120
+ D ++ GE+++ QLDL+SLKSVR CA+ IL+ E I LLINNAGVMMCP TEDG
Sbjct: 61 KKEFSDGENLGELMVTQLDLTSLKSVRNCAKVILETEKRIDLLINNAGVMMCPEGRTEDG 120
Query: 121 YELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEK-GYSA 179
+E+QF TNHLGH+L TLLLLP+I +S PARI+N+SS+AH + G + FED+N +K YS+
Sbjct: 121 FEMQFGTNHLGHFLLTLLLLPKICQSTPARIVNVSSVAHKY--GCIDFEDLNWQKRKYSS 178
Query: 180 TGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTP 239
GAY +SKLANILFT EL +RL
Sbjct: 179 LGAYQQSKLANILFTKELVRRL-------------------------------------- 200
Query: 240 TNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSP 299
G N+ Y++HPGV+ TEL RH D + WL+ R+ IK+P
Sbjct: 201 ------------AGVNV-----YSLHPGVIRTELGRHLDYRL---RWLW-RIFSFLIKTP 239
Query: 300 LQGAQTTLYCALDKKCERETGLYYA 324
QGAQTT+YCA+D+KC ETGLYYA
Sbjct: 240 DQGAQTTIYCAVDEKCANETGLYYA 264
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345488546|ref|XP_001601650.2| PREDICTED: retinol dehydrogenase 11-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 277 bits (709), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 159/332 (47%), Positives = 213/332 (64%), Gaps = 62/332 (18%)
Query: 1 MFLFSGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDI 60
M+ FS +C + RL GKT ++TG+NTGIGK TA +L +RGARVI+ACR+LEKA AA+D+
Sbjct: 1 MWPFSSRCQSKARLIGKTVVITGANTGIGKETARDLYRRGARVILACRNLEKANQAAEDV 60
Query: 61 RTS------LKDVK-DAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCP 113
R + L+ K + GE+V+ +L+L+SL SVR+CA+++ +E IHLLINNAG+MMCP
Sbjct: 61 RNNPPSRAELEQFKGEPGELVVCKLNLASLASVRECAKKLNASEPQIHLLINNAGLMMCP 120
Query: 114 RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAP-ARIINLSSLAHTWGDGSMHFEDIN 172
++ TEDGYELQ +NHLGH+L TLLLLP+I SAP ARIIN+SS+AH GSMHF+D+N
Sbjct: 121 KEKTEDGYELQLQSNHLGHFLLTLLLLPKIRSSAPGARIINVSSMAHI--SGSMHFDDLN 178
Query: 173 LEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLC 232
LEK Y+ AY +SKLAN+LFT ELA++L+
Sbjct: 179 LEKSYTPLVAYQQSKLANVLFTAELARKLK------------------------------ 208
Query: 233 DANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFD-SIIPGTAWLYQRV 291
+ I + TY++HPGV+ TEL RH D S+ PG A L+ V
Sbjct: 209 --------------------DSGIEGITTYSLHPGVISTELGRHLDKSMFPG-ARLFFTV 247
Query: 292 GGLFIKSPLQGAQTTLYCALDKKCERETGLYY 323
FIK+P GAQT+++CA+D+ ETGLYY
Sbjct: 248 FKPFIKTPELGAQTSIHCAVDETAAHETGLYY 279
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332375719|gb|AEE63000.1| unknown [Dendroctonus ponderosae] | Back alignment and taxonomy information |
|---|
Score = 277 bits (708), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 152/326 (46%), Positives = 200/326 (61%), Gaps = 53/326 (16%)
Query: 1 MFLFSGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDI 60
M FS CT+ RLDGKTA++TG NTGIGK TA + +RGARVIMACR +KA AADDI
Sbjct: 1 MGFFSAVCTSTARLDGKTAVITGFNTGIGKVTAKDFFERGARVIMACRDTQKAAAAADDI 60
Query: 61 RTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDG 120
++S + GE+VI LDL+SL+SVR CA IL E +I LL+NNAG+M CP T+DG
Sbjct: 61 KSSCQSTAKLGELVIEPLDLTSLQSVRNCANAILSKEPSIDLLVNNAGIMTCPEGTTKDG 120
Query: 121 YELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLE-KGYSA 179
+E QF TNHLGH+LFT+LLLP+II+S +RI+ LSSLAH G++ F+D+N + + Y+A
Sbjct: 121 FETQFGTNHLGHFLFTMLLLPKIIQSDRSRIVTLSSLAH--DRGTIDFDDLNFKTRPYNA 178
Query: 180 TGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTP 239
AY +SKL+N+LF++ELA+RL+
Sbjct: 179 GQAYSQSKLSNVLFSSELARRLK------------------------------------- 201
Query: 240 TNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSP 299
ANI NV TY +HPG++ TELSRH S A + K+P
Sbjct: 202 -------------EANINNVTTYCLHPGIIRTELSRHLGSTYGFVASFLWSILSWAFKTP 248
Query: 300 LQGAQTTLYCALDKKCERETGLYYAK 325
QGAQTT+Y ++D+KC E+GLYYA+
Sbjct: 249 EQGAQTTIYFSVDEKCANESGLYYAE 274
|
Source: Dendroctonus ponderosae Species: Dendroctonus ponderosae Genus: Dendroctonus Family: Curculionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350537621|ref|NP_001233110.1| uncharacterized protein LOC100166388 [Acyrthosiphon pisum] gi|239791407|dbj|BAH72175.1| ACYPI007265 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 277 bits (708), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 149/323 (46%), Positives = 193/323 (59%), Gaps = 57/323 (17%)
Query: 3 LFSGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRT 62
+FSGKCT+ RLDGK AIVTG+NTGIGK TA + GA+VI+ACR + KAE A +I
Sbjct: 1 MFSGKCTSSARLDGKIAIVTGANTGIGKVTAKQFYALGAKVILACRDVGKAEKAVSEIMA 60
Query: 63 SLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYE 122
+K G++++ +LDL+S SV++CA+ IL E IHLL+NNAGVM CP+ T+DG+E
Sbjct: 61 EVKS-DGLGQLIVEELDLASFASVKRCAKNILQKEKQIHLLVNNAGVMACPKGKTQDGFE 119
Query: 123 LQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGA 182
QF NHLGH+LFT LLLPRI S PARIIN+SS AHT GS++FEDIN ++ YSA A
Sbjct: 120 TQFGVNHLGHFLFTSLLLPRIRNSDPARIINVSSRAHT--RGSINFEDINFDRNYSAMAA 177
Query: 183 YGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNH 242
Y +SKLAN+LF+ EL +RL+ YS
Sbjct: 178 YSQSKLANVLFSKELTRRLEGTGVHVYS-------------------------------- 205
Query: 243 YCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGL-FIKSPLQ 301
+HPG+V TEL R D + WL RV ++K+P Q
Sbjct: 206 ---------------------LHPGIVSTELGRTIDEVYFPGLWLLGRVILFPWVKTPEQ 244
Query: 302 GAQTTLYCALDKKCERETGLYYA 324
GAQTTL+C++D+K ETGLYY+
Sbjct: 245 GAQTTLHCSIDEKAGEETGLYYS 267
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|193582347|ref|XP_001949012.1| PREDICTED: retinol dehydrogenase 12-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 277 bits (708), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 150/323 (46%), Positives = 200/323 (61%), Gaps = 57/323 (17%)
Query: 3 LFSGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRT 62
+FSGKCT+ RLDGKTAIVTGSNTGIGK TA E + GA+VI+ACR ++KAE A +I
Sbjct: 1 MFSGKCTSAARLDGKTAIVTGSNTGIGKVTAKEFYRIGAKVIVACRDVKKAEQAVTEIVA 60
Query: 63 SLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYE 122
+K + G++V+ +LDL+S S+++CA+ IL E IHLL+NNAGVM CP+ T+DG+E
Sbjct: 61 DVKG-DNLGQLVVEELDLASFASIKRCAKSILQKEKHIHLLVNNAGVMACPKGKTQDGFE 119
Query: 123 LQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGA 182
QF NHLGH+LFT LLLPRI S PARI+N+SS+AHT G ++F+DIN +K YSA A
Sbjct: 120 TQFGVNHLGHFLFTSLLLPRIRNSTPARIVNVSSMAHT--RGVINFDDINSDKNYSAMVA 177
Query: 183 YGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNH 242
YG+SKLAN+LF+ ELA+RL+ + YS
Sbjct: 178 YGQSKLANVLFSKELAQRLEGSGVHVYS-------------------------------- 205
Query: 243 YCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSI-IPGTAWLYQRVGGLFIKSPLQ 301
+HPG+V TEL R D + PG +L + ++K+P Q
Sbjct: 206 ---------------------LHPGLVLTELGRTIDQVYFPGMRFLARFFLYPWMKTPEQ 244
Query: 302 GAQTTLYCALDKKCERETGLYYA 324
GAQTTL+C++D+K E GLYY+
Sbjct: 245 GAQTTLHCSIDEKAGEENGLYYS 267
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|239791006|dbj|BAH72025.1| ACYPI002894 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 275 bits (704), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 149/323 (46%), Positives = 200/323 (61%), Gaps = 57/323 (17%)
Query: 3 LFSGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRT 62
+F+GKCT+ RLDGKTAIVTGSNTGIGK TA E + GA+VI+ACR ++KAE A +I
Sbjct: 1 MFNGKCTSAARLDGKTAIVTGSNTGIGKVTAKEFYRIGAKVIVACRDVKKAEQAVTEIVA 60
Query: 63 SLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYE 122
+K + G++V+ +LDL+S S+++CA+ IL E IHLL+NNAGVM CP+ T+DG+E
Sbjct: 61 DVKG-DNLGQLVVEELDLASFASIKRCAKSILQKEKHIHLLVNNAGVMACPKGKTQDGFE 119
Query: 123 LQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGA 182
QF NHLGH+LFT LLLPRI S PARI+N+SS+AHT G ++F+DIN +K YSA A
Sbjct: 120 TQFGVNHLGHFLFTSLLLPRIRNSTPARIVNVSSMAHT--RGVINFDDINSDKNYSAMVA 177
Query: 183 YGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNH 242
YG+SKLAN+LF+ ELA+RL+ + YS
Sbjct: 178 YGQSKLANVLFSKELAQRLEGSGVHVYS-------------------------------- 205
Query: 243 YCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSI-IPGTAWLYQRVGGLFIKSPLQ 301
+HPG+V TEL R D + PG +L + ++K+P Q
Sbjct: 206 ---------------------LHPGLVLTELGRTIDQVYFPGMRFLARFFLYPWMKTPEQ 244
Query: 302 GAQTTLYCALDKKCERETGLYYA 324
GAQTTL+C++D+K E GLYY+
Sbjct: 245 GAQTTLHCSIDEKAGEENGLYYS 267
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|193582345|ref|XP_001948920.1| PREDICTED: retinol dehydrogenase 11-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 273 bits (697), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 147/323 (45%), Positives = 197/323 (60%), Gaps = 57/323 (17%)
Query: 3 LFSGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRT 62
+FS KCT+ RLDGKTAIVTGSNTGIGK TA E + GARVI+ACR ++KAE A ++I
Sbjct: 1 MFSNKCTSKARLDGKTAIVTGSNTGIGKVTAKEFYRLGARVILACRDVKKAEQAVEEIVA 60
Query: 63 SLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYE 122
++ G++VI LDL+S S++ CA+ IL E IHLL+NNAGVM CP+ T+DG+E
Sbjct: 61 EVQG-DGVGQLVIEALDLASFASIKLCAKSILQKEKHIHLLVNNAGVMTCPKGKTQDGFE 119
Query: 123 LQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGA 182
QF NHLGH+LFT+LLLPRI S PARI+N++SLAH + GS++F+DIN + YS A
Sbjct: 120 TQFGINHLGHFLFTMLLLPRIRSSTPARIVNVASLAHVF--GSINFKDINHDASYSPAMA 177
Query: 183 YGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNH 242
Y +SKLAN+LF+ EL+++L+ YS
Sbjct: 178 YSQSKLANVLFSKELSRKLEGTGVHVYS-------------------------------- 205
Query: 243 YCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSI-IPGTAWLYQRVGGLFIKSPLQ 301
+HPG+V TEL+R D + PG +L + ++K+P Q
Sbjct: 206 ---------------------LHPGIVRTELTRTLDKVYFPGMWFLGRIFLYPWVKNPKQ 244
Query: 302 GAQTTLYCALDKKCERETGLYYA 324
GAQTTLYC++D+K ETGLYY+
Sbjct: 245 GAQTTLYCSIDEKSGMETGLYYS 267
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 330 | ||||||
| ZFIN|ZDB-GENE-050522-387 | 298 | zgc:112332 "zgc:112332" [Danio | 0.654 | 0.724 | 0.48 | 3.8e-60 | |
| MGI|MGI:1925224 | 316 | Rdh12 "retinol dehydrogenase 1 | 0.675 | 0.705 | 0.473 | 5.4e-59 | |
| ZFIN|ZDB-GENE-060825-39 | 336 | zgc:153441 "zgc:153441" [Danio | 0.590 | 0.580 | 0.5 | 8.8e-59 | |
| RGD|1310462 | 316 | Rdh12 "retinol dehydrogenase 1 | 0.675 | 0.705 | 0.478 | 1.1e-58 | |
| ZFIN|ZDB-GENE-040801-48 | 291 | rdh12l "retinol dehydrogenase | 0.548 | 0.621 | 0.538 | 1.8e-58 | |
| UNIPROTKB|E1BTL3 | 322 | RDH12 "Uncharacterized protein | 0.590 | 0.605 | 0.492 | 2.9e-58 | |
| ZFIN|ZDB-GENE-030131-4716 | 331 | wu:fd55e03 "wu:fd55e03" [Danio | 0.657 | 0.655 | 0.447 | 4.8e-58 | |
| UNIPROTKB|F1P956 | 324 | RDH12 "Uncharacterized protein | 0.675 | 0.688 | 0.461 | 5.4e-57 | |
| ZFIN|ZDB-GENE-100922-3 | 337 | si:dkey-23o4.6 "si:dkey-23o4.6 | 0.590 | 0.578 | 0.470 | 1.4e-56 | |
| UNIPROTKB|F1SA23 | 316 | RDH12 "Uncharacterized protein | 0.675 | 0.705 | 0.452 | 6.1e-56 |
| ZFIN|ZDB-GENE-050522-387 zgc:112332 "zgc:112332" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 494 (179.0 bits), Expect = 3.8e-60, Sum P(2) = 3.8e-60
Identities = 108/225 (48%), Positives = 144/225 (64%)
Query: 4 FSGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTS 63
F G+ ++ RLD KT I+TG+NTGIGK TA +LA+RGARV+MACR LEKAE A R
Sbjct: 8 FCGQWSSSVRLDEKTVIITGANTGIGKETARDLARRGARVVMACRDLEKAEAA----RRE 63
Query: 64 LKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYEL 123
L D +V+++LDL+ KS++ A+ I E +++LINNAG+MMCP T DG+E+
Sbjct: 64 LMDNSGNQNIVVKKLDLADTKSIKAFAELINKEEKQVNILINNAGIMMCPYSKTADGFEM 123
Query: 124 QFATNHXXXXXXXXXXXPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAY 183
QF NH + KS P+RI+N++S+AHTW +H EDIN EK YS AY
Sbjct: 124 QFGVNHLGHFLLIYLLLDLLKKSTPSRIVNVASVAHTWS--GIHLEDINSEKVYSPRRAY 181
Query: 184 GRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLT 228
G+SKLANIL T LAKRLQ + YS P + +++ F NL+
Sbjct: 182 GQSKLANILCTRSLAKRLQGSGVNVYSLH-PGVV--QSELFRNLS 223
|
|
| MGI|MGI:1925224 Rdh12 "retinol dehydrogenase 12" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 501 (181.4 bits), Expect = 5.4e-59, Sum P(2) = 5.4e-59
Identities = 109/230 (47%), Positives = 143/230 (62%)
Query: 2 FLFSGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIR 61
F G CT + ++ GK ++TG+NTGIGK TA ELA+RGARV +ACR + K E+AA +IR
Sbjct: 25 FFAGGVCTTNVQIPGKVVVITGANTGIGKETARELARRGARVYIACRDVLKGESAASEIR 84
Query: 62 TSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGY 121
D K++ +V++R+LDLS KS+R A+ L E +H+LINNAGVMMCP T DG+
Sbjct: 85 A---DTKNS-QVLVRKLDLSDTKSIRAFAERFLAEEKKLHILINNAGVMMCPYSKTTDGF 140
Query: 122 ELQFATNHXXXXXXXXXXXPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATG 181
E F NH R+ +SAPAR++NLSS+AH G + F D+ +K Y +
Sbjct: 141 ETHFGVNHLGHFLLTYLLLERLKESAPARVVNLSSIAHLIG--KIRFHDLQGQKRYCSAF 198
Query: 182 AYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILL 231
AYG SKLAN+LFT ELAKRLQ Y+ P +L R S L LL
Sbjct: 199 AYGHSKLANLLFTRELAKRLQGTGVTAYAVH-PGVVLSEITRNSYLLCLL 247
|
|
| ZFIN|ZDB-GENE-060825-39 zgc:153441 "zgc:153441" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 495 (179.3 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
Identities = 101/202 (50%), Positives = 138/202 (68%)
Query: 2 FLFSGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIR 61
++ G C RLDGKT ++TG+NTGIGK TA ++A+RGARV+MACR L KAE AA +IR
Sbjct: 38 WISGGVCRCRVRLDGKTVVITGANTGIGKETARDMARRGARVVMACRDLSKAEKAAAEIR 97
Query: 62 TSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGY 121
S + ++V+R L+L+SL SVR+ A + E + +LINNAGVMMCP+ LTEDGY
Sbjct: 98 RSTGNA----DIVVRHLNLASLHSVRQFAHQYTATEDRLDILINNAGVMMCPKSLTEDGY 153
Query: 122 ELQFATNHXXXXXXXXXXXPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKG-YSAT 180
E QFA NH + KS+P+R+IN+SS+ H G G +HF+D+N K Y +
Sbjct: 154 ETQFAVNHLGHFLLTVLLLDMLKKSSPSRVINVSSITHK-G-GKIHFDDLNFNKAPYDSL 211
Query: 181 GAYGRSKLANILFTTELAKRLQ 202
+Y +SKLAN+LFT ELA+R++
Sbjct: 212 VSYRQSKLANLLFTRELARRIK 233
|
|
| RGD|1310462 Rdh12 "retinol dehydrogenase 12 (all-trans/9-cis/11-cis)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 487 (176.5 bits), Expect = 1.1e-58, Sum P(2) = 1.1e-58
Identities = 110/230 (47%), Positives = 141/230 (61%)
Query: 2 FLFSGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIR 61
F G CT ++ GK ++TG+NTGIGK TA ELA+RGARV +ACR + K E+AA +IR
Sbjct: 25 FFAGGVCTTKVQIPGKVVVITGANTGIGKETARELARRGARVYIACRDVLKGESAASEIR 84
Query: 62 TSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGY 121
D K++ +V++R+LDLS KS+R A+ L E +H+LINNAGVMMCP T DG+
Sbjct: 85 A---DTKNS-QVLVRKLDLSDTKSIRTFAEGFLAEEKKLHILINNAGVMMCPYSKTVDGF 140
Query: 122 ELQFATNHXXXXXXXXXXXPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATG 181
E F NH R+ +SAPAR+INLSS+AH G G + F D+ +K Y +
Sbjct: 141 ETHFGVNHLGHFLLTYLLLGRLKESAPARVINLSSVAHL-G-GKIRFHDLQSKKRYCSGF 198
Query: 182 AYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILL 231
AY SKLAN+LFT ELAKRLQ Y P +L R S L LL
Sbjct: 199 AYSHSKLANVLFTRELAKRLQGTGVTAYVVH-PGCVLSEITRHSFLMCLL 247
|
|
| ZFIN|ZDB-GENE-040801-48 rdh12l "retinol dehydrogenase 12, like" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 475 (172.3 bits), Expect = 1.8e-58, Sum P(2) = 1.8e-58
Identities = 104/193 (53%), Positives = 130/193 (67%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG- 71
RLDGKT ++TG+NTGIGK TA +LAKRGAR+IMACR +EKAE A LK+VKD+
Sbjct: 10 RLDGKTVLITGANTGIGKETAIDLAKRGARIIMACRDMEKAEAA-------LKEVKDSSG 62
Query: 72 --EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNH 129
+V I LDLS KS+R A++I E +++LINNAGVM+CP T DG+E+Q NH
Sbjct: 63 NQDVFISSLDLSDSKSIRGFAEKINKEEKQVNILINNAGVMVCPYGKTADGFEMQIGVNH 122
Query: 130 XXXXXXXXXXXPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
I +SAPARIIN+SS AH WG +++ EDIN EK Y AY +SKLA
Sbjct: 123 MGHFLLTYLLLDLIKRSAPARIINVSSTAHQWG--TINLEDINSEKNYDKQKAYCQSKLA 180
Query: 190 NILFTTELAKRLQ 202
N+LFT LAKRL+
Sbjct: 181 NVLFTRSLAKRLE 193
|
|
| UNIPROTKB|E1BTL3 RDH12 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 482 (174.7 bits), Expect = 2.9e-58, Sum P(2) = 2.9e-58
Identities = 100/203 (49%), Positives = 134/203 (66%)
Query: 2 FLFSGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIR 61
++ G+C + RLDGK A++TG+NTGIGK TA ELA+RGARVI+ACR + KAE AA +IR
Sbjct: 29 YVAGGRCRSTARLDGKVAVITGANTGIGKETARELARRGARVIVACRDIAKAEAAAREIR 88
Query: 62 TSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGY 121
D EV++++LDL+ +S+R+ A L E +H+LINNAGVM+CP T DG+
Sbjct: 89 AET----DNQEVIVKKLDLADTRSIREFANSFLAEEKELHILINNAGVMLCPYSKTADGF 144
Query: 122 ELQFATNHXX--XXXXXXXXXPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSA 179
E+ NH R+ +SAP+RI+N+SSLAH G + F D+N EK Y+
Sbjct: 145 EMHLGVNHLAPGHFLLTFLLLERLKQSAPSRIVNVSSLAHH--GGRIRFHDLNGEKSYNR 202
Query: 180 TGAYGRSKLANILFTTELAKRLQ 202
AY SKLAN+LFT ELA+RLQ
Sbjct: 203 GLAYCHSKLANVLFTRELARRLQ 225
|
|
| ZFIN|ZDB-GENE-030131-4716 wu:fd55e03 "wu:fd55e03" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 458 (166.3 bits), Expect = 4.8e-58, Sum P(2) = 4.8e-58
Identities = 103/230 (44%), Positives = 146/230 (63%)
Query: 2 FLFSGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIR 61
+L G C + RL+GKT ++TG NTGIGK TA ++AKRGARVI+ACR + +A AA++IR
Sbjct: 39 WLAGGVCRSKARLNGKTVLITGGNTGIGKETAVDMAKRGARVILACRDMSRAHKAAEEIR 98
Query: 62 TSLKDVKDAGE-VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDG 120
+ E V ++ LDL+SL+SVR +++ +E + +LINNAGVMMCP+ T++G
Sbjct: 99 K-----RSGNENVTVKMLDLASLQSVRDLVKDVQQSEQRLDILINNAGVMMCPKWHTDEG 153
Query: 121 YELQFATNHXXXXXXXXXXXPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSAT 180
+E+Q NH + KSAP+RI+N++S+AH G ++F DIN++K Y
Sbjct: 154 FEMQIGVNHLGHFLLTNLLLDMLKKSAPSRIVNVASVAHE--RGKINFNDINMDKDYDPY 211
Query: 181 GAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEI---LGRTKRFSNL 227
+Y RSKLAN+LFT ELA +L+ Y+ P I LGR FSNL
Sbjct: 212 QSYYRSKLANVLFTRELAIKLRDTGVTTYALH-PGVIRTELGRHV-FSNL 259
|
|
| UNIPROTKB|F1P956 RDH12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 465 (168.7 bits), Expect = 5.4e-57, Sum P(2) = 5.4e-57
Identities = 108/234 (46%), Positives = 140/234 (59%)
Query: 2 FLFSGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKR----GARVIMACRSLEKAETAA 57
F G C ++ +L GK ++TG+NTGIGK TA ELA+R GARV +ACR + K E+AA
Sbjct: 29 FFAGGVCRSNVQLPGKVVVITGANTGIGKETARELARRVLAPGARVYIACRDVLKGESAA 88
Query: 58 DDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLT 117
+IR D K++ +V++R+LDLS KS+R A+ L E +H+LINNAGVMMCP T
Sbjct: 89 SEIRA---DTKNS-QVLVRKLDLSDTKSIRAFAEGFLAEEKQLHILINNAGVMMCPYSKT 144
Query: 118 EDGYELQFATNHXXXXXXXXXXXPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGY 177
DG+E NH R+ +S PAR++NLSS+AH G +HF D+ EK Y
Sbjct: 145 ADGFETHLGVNHLGHFLLTHLLLERLKESTPARVVNLSSVAHHIG--KIHFHDLQGEKRY 202
Query: 178 SATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILL 231
S AY SKLAN+LFT ELAKRLQ Y+ P + R S L LL
Sbjct: 203 SRGFAYCHSKLANMLFTRELAKRLQGTGVTTYAVH-PGVVSSELVRHSFLLCLL 255
|
|
| ZFIN|ZDB-GENE-100922-3 si:dkey-23o4.6 "si:dkey-23o4.6" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 450 (163.5 bits), Expect = 1.4e-56, Sum P(2) = 1.4e-56
Identities = 95/202 (47%), Positives = 137/202 (67%)
Query: 2 FLFSGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIR 61
++ G C + RLDGKT ++TG+NTGIG+ TA ++A RGARV+MACR L +AE AA+ IR
Sbjct: 38 WIAGGVCKSHARLDGKTVVITGANTGIGRETAKDMAYRGARVVMACRDLIRAEDAAEYIR 97
Query: 62 TSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGY 121
+ G VVIR L+L+SL SVR+ A+E + E + +LINNAGVMMCP+ +TED +
Sbjct: 98 RCTGN----GNVVIRHLNLASLYSVREFAKEFIATEERLDILINNAGVMMCPKCVTEDRF 153
Query: 122 ELQFATNHXXXXXXXXXXXPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKG-YSAT 180
E Q A NH + +S+P+R++N+SS+AH G G + F+D+ +K YS
Sbjct: 154 ETQLAVNHLGHFLLTNLLLEMLKRSSPSRVVNVSSIAHV-G-GKIEFDDLFFDKRPYSPL 211
Query: 181 GAYGRSKLANILFTTELAKRLQ 202
+Y +SKLAN+LF+ ELA+R++
Sbjct: 212 VSYKQSKLANVLFSRELARRMK 233
|
|
| UNIPROTKB|F1SA23 RDH12 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 461 (167.3 bits), Expect = 6.1e-56, Sum P(2) = 6.1e-56
Identities = 104/230 (45%), Positives = 137/230 (59%)
Query: 2 FLFSGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIR 61
F G C + +L GK ++TG+NTGIGK TA ELA+RGARV +ACR + K E+AA +IR
Sbjct: 25 FFAGGVCRTNMQLPGKVVVITGANTGIGKETARELARRGARVYIACRDVLKGESAASEIR 84
Query: 62 TSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGY 121
D K++ +V++R+LDLS KS+R A+ L E +H+LINNAGVM+CP T DG+
Sbjct: 85 A---DTKNS-QVLVRKLDLSDTKSIRAFAEGFLTEEKQLHILINNAGVMLCPYSKTADGF 140
Query: 122 ELQFATNHXXXXXXXXXXXPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATG 181
E NH ++ SAPAR++NLSS+ H G + F D+ EK Y+
Sbjct: 141 ETHLGVNHLGHFLLTHLLLEQLKASAPARVVNLSSVVHH--AGKIRFHDLQGEKHYNRGF 198
Query: 182 AYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILL 231
AY SKLAN+LFT ELAKRLQ Y+ P + R S L LL
Sbjct: 199 AYCHSKLANVLFTRELAKRLQGTGVTTYAVH-PGIVQSELVRHSFLLCLL 247
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8TC12 | RDH11_HUMAN | 1, ., 1, ., 1, ., 3, 0, 0 | 0.4303 | 0.7848 | 0.8144 | yes | N/A |
| O74959 | YJCD_SCHPO | 1, ., -, ., -, ., - | 0.3290 | 0.7454 | 0.7256 | yes | N/A |
| Q9QYF1 | RDH11_MOUSE | 1, ., 1, ., 1, ., 3, 0, 0 | 0.4342 | 0.7969 | 0.8322 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.1.1 | 0.766 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 330 | |||
| cd09807 | 274 | cd09807, retinol-DH_like_SDR_c, retinol dehydrogen | 1e-104 | |
| cd05327 | 269 | cd05327, retinol-DH_like_SDR_c_like, retinol dehyd | 1e-101 | |
| PRK06197 | 306 | PRK06197, PRK06197, short chain dehydrogenase; Pro | 5e-79 | |
| PRK06196 | 315 | PRK06196, PRK06196, oxidoreductase; Provisional | 1e-61 | |
| PRK05854 | 313 | PRK05854, PRK05854, short chain dehydrogenase; Pro | 2e-56 | |
| cd09809 | 284 | cd09809, human_WWOX_like_SDR_c-like, human WWOX (W | 4e-45 | |
| cd09808 | 255 | cd09808, DHRS-12_like_SDR_c-like, human dehydrogen | 9e-35 | |
| cd09810 | 311 | cd09810, LPOR_like_SDR_c_like, light-dependent pro | 2e-34 | |
| COG1028 | 251 | COG1028, FabG, Dehydrogenases with different speci | 1e-33 | |
| cd05233 | 234 | cd05233, SDR_c, classical (c) SDRs | 1e-32 | |
| PRK07453 | 322 | PRK07453, PRK07453, protochlorophyllide oxidoreduc | 2e-30 | |
| cd05324 | 225 | cd05324, carb_red_PTCR-like_SDR_c, Porcine testicu | 6e-26 | |
| TIGR01289 | 314 | TIGR01289, LPOR, light-dependent protochlorophylli | 9e-26 | |
| COG0300 | 265 | COG0300, DltE, Short-chain dehydrogenases of vario | 4e-25 | |
| PRK12826 | 251 | PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-prote | 8e-25 | |
| PRK05565 | 247 | PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein) | 1e-24 | |
| PRK12939 | 250 | PRK12939, PRK12939, short chain dehydrogenase; Pro | 8e-24 | |
| PRK07231 | 251 | PRK07231, fabG, 3-ketoacyl-(acyl-carrier-protein) | 9e-24 | |
| PRK05653 | 246 | PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) | 2e-23 | |
| cd05333 | 240 | cd05333, BKR_SDR_c, beta-Keto acyl carrier protein | 2e-22 | |
| PRK05557 | 248 | PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) | 3e-22 | |
| cd05374 | 248 | cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxyster | 4e-22 | |
| COG4221 | 246 | COG4221, COG4221, Short-chain alcohol dehydrogenas | 5e-22 | |
| PLN00015 | 308 | PLN00015, PLN00015, protochlorophyllide reductase | 1e-21 | |
| cd05346 | 249 | cd05346, SDR_c5, classical (c) SDR, subgroup 5 | 4e-21 | |
| PRK06914 | 280 | PRK06914, PRK06914, short chain dehydrogenase; Pro | 4e-21 | |
| PRK07666 | 239 | PRK07666, fabG, 3-ketoacyl-(acyl-carrier-protein) | 2e-20 | |
| cd05344 | 253 | cd05344, BKR_like_SDR_like, putative beta-ketoacyl | 6e-20 | |
| cd08939 | 239 | cd08939, KDSR-like_SDR_c, 3-ketodihydrosphingosine | 1e-19 | |
| PRK12825 | 249 | PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) | 1e-19 | |
| cd08944 | 246 | cd08944, SDR_c12, classical (c) SDR, subgroup 12 | 2e-18 | |
| PRK07774 | 250 | PRK07774, PRK07774, short chain dehydrogenase; Pro | 3e-18 | |
| PRK09242 | 257 | PRK09242, PRK09242, tropinone reductase; Provision | 4e-18 | |
| cd05369 | 249 | cd05369, TER_DECR_SDR_a, Trans-2-enoyl-CoA reducta | 4e-18 | |
| cd08941 | 290 | cd08941, 3KS_SDR_c, 3-keto steroid reductase, clas | 1e-17 | |
| cd05370 | 228 | cd05370, SDR_c2, classical (c) SDR, subgroup 2 | 1e-17 | |
| cd05360 | 233 | cd05360, SDR_c3, classical (c) SDR, subgroup 3 | 2e-17 | |
| cd05362 | 243 | cd05362, THN_reductase-like_SDR_c, tetrahydroxynap | 5e-17 | |
| cd05332 | 257 | cd05332, 11beta-HSD1_like_SDR_c, 11beta-hydroxyste | 8e-17 | |
| cd05325 | 233 | cd05325, carb_red_sniffer_like_SDR_c, carbonyl red | 8e-17 | |
| PRK07067 | 257 | PRK07067, PRK07067, sorbitol dehydrogenase; Provis | 1e-16 | |
| PRK12935 | 247 | PRK12935, PRK12935, acetoacetyl-CoA reductase; Pro | 2e-16 | |
| PRK05866 | 293 | PRK05866, PRK05866, short chain dehydrogenase; Pro | 2e-16 | |
| cd08942 | 250 | cd08942, RhlG_SDR_c, RhlG and related beta-ketoacy | 3e-16 | |
| PRK08277 | 278 | PRK08277, PRK08277, D-mannonate oxidoreductase; Pr | 3e-16 | |
| cd05338 | 246 | cd05338, DHRS1_HSDL2-like_SDR_c, human dehydrogena | 4e-16 | |
| PRK08264 | 238 | PRK08264, PRK08264, short chain dehydrogenase; Val | 4e-16 | |
| TIGR01830 | 239 | TIGR01830, 3oxo_ACP_reduc, 3-oxoacyl-(acyl-carrier | 5e-16 | |
| PRK07201 | 657 | PRK07201, PRK07201, short chain dehydrogenase; Pro | 5e-16 | |
| cd08951 | 260 | cd08951, DR_C-13_KR_SDR_c_like, daunorubicin C-13 | 6e-16 | |
| PRK06935 | 258 | PRK06935, PRK06935, 2-deoxy-D-gluconate 3-dehydrog | 8e-16 | |
| PRK08017 | 256 | PRK08017, PRK08017, oxidoreductase; Provisional | 9e-16 | |
| cd05347 | 248 | cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogena | 1e-15 | |
| cd08934 | 243 | cd08934, CAD_SDR_c, clavulanic acid dehydrogenase | 1e-15 | |
| PRK12429 | 258 | PRK12429, PRK12429, 3-hydroxybutyrate dehydrogenas | 1e-15 | |
| PRK08589 | 272 | PRK08589, PRK08589, short chain dehydrogenase; Val | 1e-15 | |
| PRK08226 | 263 | PRK08226, PRK08226, short chain dehydrogenase; Pro | 2e-15 | |
| PRK06182 | 273 | PRK06182, PRK06182, short chain dehydrogenase; Val | 2e-15 | |
| cd05339 | 243 | cd05339, 17beta-HSDXI-like_SDR_c, human 17-beta-hy | 3e-15 | |
| PRK06841 | 255 | PRK06841, PRK06841, short chain dehydrogenase; Pro | 4e-15 | |
| PRK12828 | 239 | PRK12828, PRK12828, short chain dehydrogenase; Pro | 5e-15 | |
| cd05351 | 244 | cd05351, XR_like_SDR_c, xylulose reductase-like, c | 6e-15 | |
| PRK07326 | 237 | PRK07326, PRK07326, short chain dehydrogenase; Pro | 6e-15 | |
| pfam00106 | 167 | pfam00106, adh_short, short chain dehydrogenase | 7e-15 | |
| cd05368 | 241 | cd05368, DHRS6_like_SDR_c, human DHRS6-like, class | 8e-15 | |
| cd05329 | 251 | cd05329, TR_SDR_c, tropinone reductase-I and II (T | 9e-15 | |
| cd05345 | 248 | cd05345, BKR_3_SDR_c, putative beta-ketoacyl acyl | 2e-14 | |
| cd05358 | 253 | cd05358, GlcDH_SDR_c, glucose 1 dehydrogenase (Glc | 2e-14 | |
| PRK07454 | 241 | PRK07454, PRK07454, short chain dehydrogenase; Pro | 2e-14 | |
| PRK07063 | 260 | PRK07063, PRK07063, short chain dehydrogenase; Pro | 5e-14 | |
| PRK06949 | 258 | PRK06949, PRK06949, short chain dehydrogenase; Pro | 6e-14 | |
| PRK06138 | 252 | PRK06138, PRK06138, short chain dehydrogenase; Pro | 7e-14 | |
| cd05365 | 242 | cd05365, 7_alpha_HSDH_SDR_c, 7 alpha-hydroxysteroi | 1e-13 | |
| PRK07825 | 273 | PRK07825, PRK07825, short chain dehydrogenase; Pro | 1e-13 | |
| PRK07109 | 334 | PRK07109, PRK07109, short chain dehydrogenase; Pro | 1e-13 | |
| cd05323 | 244 | cd05323, ADH_SDR_c_like, insect type alcohol dehyd | 1e-13 | |
| PRK06500 | 249 | PRK06500, PRK06500, short chain dehydrogenase; Pro | 2e-13 | |
| PRK06077 | 252 | PRK06077, fabG, 3-ketoacyl-(acyl-carrier-protein) | 2e-13 | |
| cd05353 | 250 | cd05353, hydroxyacyl-CoA-like_DH_SDR_c-like, (3R)- | 3e-13 | |
| PRK06463 | 255 | PRK06463, fabG, 3-ketoacyl-(acyl-carrier-protein) | 4e-13 | |
| PRK12743 | 256 | PRK12743, PRK12743, oxidoreductase; Provisional | 4e-13 | |
| cd05363 | 254 | cd05363, SDH_SDR_c, Sorbitol dehydrogenase (SDH), | 5e-13 | |
| PRK09072 | 263 | PRK09072, PRK09072, short chain dehydrogenase; Pro | 5e-13 | |
| cd08932 | 223 | cd08932, HetN_like_SDR_c, HetN oxidoreductase-like | 6e-13 | |
| PRK06179 | 270 | PRK06179, PRK06179, short chain dehydrogenase; Pro | 9e-13 | |
| cd05354 | 235 | cd05354, SDR_c7, classical (c) SDR, subgroup 7 | 9e-13 | |
| COG3967 | 245 | COG3967, DltE, Short-chain dehydrogenase involved | 1e-12 | |
| TIGR01963 | 255 | TIGR01963, PHB_DH, 3-hydroxybutyrate dehydrogenase | 1e-12 | |
| cd05326 | 249 | cd05326, secoisolariciresinol-DH_like_SDR_c, secoi | 1e-12 | |
| PRK12746 | 254 | PRK12746, PRK12746, short chain dehydrogenase; Pro | 2e-12 | |
| cd05357 | 234 | cd05357, PR_SDR_c, pteridine reductase (PR), class | 2e-12 | |
| cd05367 | 241 | cd05367, SPR-like_SDR_c, sepiapterin reductase (SP | 2e-12 | |
| cd05364 | 253 | cd05364, SDR_c11, classical (c) SDR, subgroup 11 | 2e-12 | |
| PRK08324 | 681 | PRK08324, PRK08324, short chain dehydrogenase; Val | 3e-12 | |
| cd08935 | 271 | cd08935, mannonate_red_SDR_c, putative D-mannonate | 6e-12 | |
| PRK08936 | 261 | PRK08936, PRK08936, glucose-1-dehydrogenase; Provi | 7e-12 | |
| PRK12745 | 256 | PRK12745, PRK12745, 3-ketoacyl-(acyl-carrier-prote | 1e-11 | |
| cd05337 | 255 | cd05337, BKR_1_SDR_c, putative beta-ketoacyl acyl | 1e-11 | |
| PRK06171 | 266 | PRK06171, PRK06171, sorbitol-6-phosphate 2-dehydro | 1e-11 | |
| PRK08340 | 259 | PRK08340, PRK08340, glucose-1-dehydrogenase; Provi | 1e-11 | |
| PRK07677 | 252 | PRK07677, PRK07677, short chain dehydrogenase; Pro | 1e-11 | |
| PRK06113 | 255 | PRK06113, PRK06113, 7-alpha-hydroxysteroid dehydro | 2e-11 | |
| cd05355 | 270 | cd05355, SDR_c1, classical (c) SDR, subgroup 1 | 2e-11 | |
| cd05356 | 239 | cd05356, 17beta-HSD1_like_SDR_c, 17-beta-hydroxyst | 2e-11 | |
| PRK06194 | 287 | PRK06194, PRK06194, hypothetical protein; Provisio | 2e-11 | |
| PRK06125 | 259 | PRK06125, PRK06125, short chain dehydrogenase; Pro | 3e-11 | |
| PRK05855 | 582 | PRK05855, PRK05855, short chain dehydrogenase; Val | 3e-11 | |
| PRK12824 | 245 | PRK12824, PRK12824, acetoacetyl-CoA reductase; Pro | 3e-11 | |
| cd05341 | 247 | cd05341, 3beta-17beta-HSD_like_SDR_c, 3beta17beta | 4e-11 | |
| cd08929 | 226 | cd08929, SDR_c4, classical (c) SDR, subgroup 4 | 4e-11 | |
| PRK06484 | 520 | PRK06484, PRK06484, short chain dehydrogenase; Val | 5e-11 | |
| PRK08213 | 259 | PRK08213, PRK08213, gluconate 5-dehydrogenase; Pro | 6e-11 | |
| PRK06523 | 260 | PRK06523, PRK06523, short chain dehydrogenase; Pro | 7e-11 | |
| PRK08085 | 254 | PRK08085, PRK08085, gluconate 5-dehydrogenase; Pro | 8e-11 | |
| PRK12829 | 264 | PRK12829, PRK12829, short chain dehydrogenase; Pro | 9e-11 | |
| PRK07832 | 272 | PRK07832, PRK07832, short chain dehydrogenase; Pro | 1e-10 | |
| PRK06198 | 260 | PRK06198, PRK06198, short chain dehydrogenase; Pro | 1e-10 | |
| PRK07478 | 254 | PRK07478, PRK07478, short chain dehydrogenase; Pro | 1e-10 | |
| cd05343 | 250 | cd05343, Mgc4172-like_SDR_c, human Mgc4172-like, c | 1e-10 | |
| cd05371 | 252 | cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydr | 2e-10 | |
| PRK06181 | 263 | PRK06181, PRK06181, short chain dehydrogenase; Pro | 2e-10 | |
| cd09805 | 281 | cd09805, type2_17beta_HSD-like_SDR_c, human 17beta | 2e-10 | |
| PRK08265 | 261 | PRK08265, PRK08265, short chain dehydrogenase; Pro | 3e-10 | |
| cd05366 | 257 | cd05366, meso-BDH-like_SDR_c, meso-2,3-butanediol | 3e-10 | |
| PRK07775 | 274 | PRK07775, PRK07775, short chain dehydrogenase; Pro | 3e-10 | |
| PRK06124 | 256 | PRK06124, PRK06124, gluconate 5-dehydrogenase; Pro | 4e-10 | |
| TIGR02632 | 676 | TIGR02632, RhaD_aldol-ADH, rhamnulose-1-phosphate | 4e-10 | |
| PRK07523 | 255 | PRK07523, PRK07523, gluconate 5-dehydrogenase; Pro | 5e-10 | |
| cd08937 | 256 | cd08937, DHB_DH-like_SDR_c, 1,6-dihydroxycyclohexa | 6e-10 | |
| PRK07814 | 263 | PRK07814, PRK07814, short chain dehydrogenase; Pro | 6e-10 | |
| PRK08220 | 252 | PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehy | 6e-10 | |
| PRK06172 | 253 | PRK06172, PRK06172, short chain dehydrogenase; Pro | 7e-10 | |
| cd08933 | 261 | cd08933, RDH_SDR_c, retinal dehydrogenase-like, cl | 7e-10 | |
| cd05359 | 242 | cd05359, ChcA_like_SDR_c, 1-cyclohexenylcarbonyl_c | 7e-10 | |
| TIGR03206 | 250 | TIGR03206, benzo_BadH, 2-hydroxycyclohexanecarboxy | 9e-10 | |
| PRK07060 | 245 | PRK07060, PRK07060, short chain dehydrogenase; Pro | 9e-10 | |
| TIGR04316 | 250 | TIGR04316, dhbA_paeA, 2,3-dihydro-2,3-dihydroxyben | 9e-10 | |
| PRK08278 | 273 | PRK08278, PRK08278, short chain dehydrogenase; Pro | 1e-09 | |
| PRK08063 | 250 | PRK08063, PRK08063, enoyl-(acyl carrier protein) r | 1e-09 | |
| cd09762 | 243 | cd09762, HSDL2_SDR_c, human hydroxysteroid dehydro | 2e-09 | |
| PRK10538 | 248 | PRK10538, PRK10538, malonic semialdehyde reductase | 2e-09 | |
| cd05352 | 252 | cd05352, MDH-like_SDR_c, mannitol dehydrogenase (M | 2e-09 | |
| PRK08217 | 253 | PRK08217, fabG, 3-ketoacyl-(acyl-carrier-protein) | 3e-09 | |
| cd08940 | 258 | cd08940, HBDH_SDR_c, d-3-hydroxybutyrate dehydroge | 3e-09 | |
| PRK06924 | 251 | PRK06924, PRK06924, short chain dehydrogenase; Pro | 3e-09 | |
| PRK08643 | 256 | PRK08643, PRK08643, acetoin reductase; Validated | 5e-09 | |
| PRK13394 | 262 | PRK13394, PRK13394, 3-hydroxybutyrate dehydrogenas | 7e-09 | |
| cd08945 | 258 | cd08945, PKR_SDR_c, Polyketide ketoreductase, clas | 8e-09 | |
| PRK07097 | 265 | PRK07097, PRK07097, gluconate 5-dehydrogenase; Pro | 1e-08 | |
| PRK09291 | 257 | PRK09291, PRK09291, short chain dehydrogenase; Pro | 1e-08 | |
| PRK07792 | 306 | PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) | 2e-08 | |
| TIGR02415 | 254 | TIGR02415, 23BDH, acetoin reductases | 3e-08 | |
| PRK12823 | 260 | PRK12823, benD, 1,6-dihydroxycyclohexa-2,4-diene-1 | 3e-08 | |
| PRK06484 | 520 | PRK06484, PRK06484, short chain dehydrogenase; Val | 4e-08 | |
| TIGR01832 | 248 | TIGR01832, kduD, 2-deoxy-D-gluconate 3-dehydrogena | 5e-08 | |
| PRK07069 | 251 | PRK07069, PRK07069, short chain dehydrogenase; Val | 5e-08 | |
| TIGR01829 | 242 | TIGR01829, AcAcCoA_reduct, acetoacetyl-CoA reducta | 5e-08 | |
| PRK05872 | 296 | PRK05872, PRK05872, short chain dehydrogenase; Pro | 5e-08 | |
| cd09806 | 258 | cd09806, type1_17beta-HSD-like_SDR_c, human estrog | 5e-08 | |
| PRK07791 | 286 | PRK07791, PRK07791, short chain dehydrogenase; Pro | 5e-08 | |
| PRK09186 | 256 | PRK09186, PRK09186, flagellin modification protein | 5e-08 | |
| cd05340 | 236 | cd05340, Ycik_SDR_c, Escherichia coli K-12 YCIK-li | 6e-08 | |
| PRK08945 | 247 | PRK08945, PRK08945, putative oxoacyl-(acyl carrier | 6e-08 | |
| PRK07035 | 252 | PRK07035, PRK07035, short chain dehydrogenase; Pro | 7e-08 | |
| PRK12384 | 259 | PRK12384, PRK12384, sorbitol-6-phosphate dehydroge | 8e-08 | |
| PRK07062 | 265 | PRK07062, PRK07062, short chain dehydrogenase; Pro | 8e-08 | |
| PRK12747 | 252 | PRK12747, PRK12747, short chain dehydrogenase; Pro | 8e-08 | |
| PRK12827 | 249 | PRK12827, PRK12827, short chain dehydrogenase; Pro | 1e-07 | |
| PRK06139 | 330 | PRK06139, PRK06139, short chain dehydrogenase; Pro | 1e-07 | |
| PRK06057 | 255 | PRK06057, PRK06057, short chain dehydrogenase; Pro | 1e-07 | |
| cd05349 | 246 | cd05349, BKR_2_SDR_c, putative beta-ketoacyl acyl | 1e-07 | |
| PRK05867 | 253 | PRK05867, PRK05867, short chain dehydrogenase; Pro | 2e-07 | |
| PRK07806 | 248 | PRK07806, PRK07806, short chain dehydrogenase; Pro | 2e-07 | |
| PRK05993 | 277 | PRK05993, PRK05993, short chain dehydrogenase; Pro | 2e-07 | |
| PRK06398 | 258 | PRK06398, PRK06398, aldose dehydrogenase; Validate | 2e-07 | |
| PRK06550 | 235 | PRK06550, fabG, 3-ketoacyl-(acyl-carrier-protein) | 2e-07 | |
| PLN02780 | 320 | PLN02780, PLN02780, ketoreductase/ oxidoreductase | 3e-07 | |
| PRK06200 | 263 | PRK06200, PRK06200, 2,3-dihydroxy-2,3-dihydropheny | 4e-07 | |
| PRK07576 | 264 | PRK07576, PRK07576, short chain dehydrogenase; Pro | 4e-07 | |
| PRK06720 | 169 | PRK06720, PRK06720, hypothetical protein; Provisio | 5e-07 | |
| PRK05650 | 270 | PRK05650, PRK05650, short chain dehydrogenase; Pro | 5e-07 | |
| cd08943 | 250 | cd08943, R1PA_ADH_SDR_c, rhamnulose-1-phosphate al | 5e-07 | |
| PRK06180 | 277 | PRK06180, PRK06180, short chain dehydrogenase; Pro | 5e-07 | |
| cd05330 | 257 | cd05330, cyclohexanol_reductase_SDR_c, cyclohexano | 5e-07 | |
| PRK07023 | 243 | PRK07023, PRK07023, short chain dehydrogenase; Pro | 5e-07 | |
| cd08930 | 250 | cd08930, SDR_c8, classical (c) SDR, subgroup 8 | 6e-07 | |
| PRK12936 | 245 | PRK12936, PRK12936, 3-ketoacyl-(acyl-carrier-prote | 7e-07 | |
| TIGR01831 | 239 | TIGR01831, fabG_rel, 3-oxoacyl-(acyl-carrier-prote | 7e-07 | |
| PRK09135 | 249 | PRK09135, PRK09135, pteridine reductase; Provision | 9e-07 | |
| TIGR03971 | 265 | TIGR03971, SDR_subfam_1, oxidoreductase, SDR famil | 9e-07 | |
| cd05350 | 239 | cd05350, SDR_c6, classical (c) SDR, subgroup 6 | 1e-06 | |
| cd09763 | 265 | cd09763, DHRS1-like_SDR_c, human dehydrogenase/red | 2e-06 | |
| PRK08261 | 450 | PRK08261, fabG, 3-ketoacyl-(acyl-carrier-protein) | 2e-06 | |
| PRK12744 | 257 | PRK12744, PRK12744, short chain dehydrogenase; Pro | 2e-06 | |
| PRK06947 | 248 | PRK06947, PRK06947, glucose-1-dehydrogenase; Provi | 2e-06 | |
| PRK07890 | 258 | PRK07890, PRK07890, short chain dehydrogenase; Pro | 2e-06 | |
| cd09761 | 242 | cd09761, A3DFK9-like_SDR_c, Clostridium thermocell | 2e-06 | |
| PRK12937 | 245 | PRK12937, PRK12937, short chain dehydrogenase; Pro | 3e-06 | |
| PRK08263 | 275 | PRK08263, PRK08263, short chain dehydrogenase; Pro | 3e-06 | |
| PRK06482 | 276 | PRK06482, PRK06482, short chain dehydrogenase; Pro | 4e-06 | |
| pfam08659 | 181 | pfam08659, KR, KR domain | 5e-06 | |
| cd08953 | 436 | cd08953, KR_2_SDR_x, ketoreductase (KR), subgroup | 5e-06 | |
| cd01078 | 194 | cd01078, NAD_bind_H4MPT_DH, NADP binding domain of | 9e-06 | |
| PRK08628 | 258 | PRK08628, PRK08628, short chain dehydrogenase; Pro | 9e-06 | |
| smart00822 | 180 | smart00822, PKS_KR, This enzymatic domain is part | 1e-05 | |
| PRK05876 | 275 | PRK05876, PRK05876, short chain dehydrogenase; Pro | 1e-05 | |
| PRK06701 | 290 | PRK06701, PRK06701, short chain dehydrogenase; Pro | 1e-05 | |
| PRK06123 | 248 | PRK06123, PRK06123, short chain dehydrogenase; Pro | 1e-05 | |
| PRK07041 | 230 | PRK07041, PRK07041, short chain dehydrogenase; Pro | 2e-05 | |
| cd05348 | 257 | cd05348, BphB-like_SDR_c, cis-biphenyl-2,3-dihydro | 2e-05 | |
| cd05331 | 244 | cd05331, DH-DHB-DH_SDR_c, 2,3 dihydro-2,3 dihydroz | 2e-05 | |
| PRK05875 | 276 | PRK05875, PRK05875, short chain dehydrogenase; Pro | 2e-05 | |
| cd05274 | 375 | cd05274, KR_FAS_SDR_x, ketoreductase (KR) and fatt | 3e-05 | |
| PRK08703 | 239 | PRK08703, PRK08703, short chain dehydrogenase; Pro | 3e-05 | |
| cd08931 | 227 | cd08931, SDR_c9, classical (c) SDR, subgroup 9 | 3e-05 | |
| PRK06128 | 300 | PRK06128, PRK06128, oxidoreductase; Provisional | 4e-05 | |
| PRK05786 | 238 | PRK05786, fabG, 3-ketoacyl-(acyl-carrier-protein) | 5e-05 | |
| PRK09730 | 247 | PRK09730, PRK09730, putative NAD(P)-binding oxidor | 6e-05 | |
| PRK05693 | 274 | PRK05693, PRK05693, short chain dehydrogenase; Pro | 7e-05 | |
| TIGR03325 | 262 | TIGR03325, BphB_TodD, cis-2,3-dihydrobiphenyl-2,3- | 7e-05 | |
| PLN02253 | 280 | PLN02253, PLN02253, xanthoxin dehydrogenase | 7e-05 | |
| PRK08177 | 225 | PRK08177, PRK08177, short chain dehydrogenase; Pro | 1e-04 | |
| cd05328 | 250 | cd05328, 3alpha_HSD_SDR_c, alpha hydroxysteroid de | 1e-04 | |
| cd08928 | 248 | cd08928, KR_fFAS_like_SDR_c_like, ketoacyl reducta | 1e-04 | |
| PRK12481 | 251 | PRK12481, PRK12481, 2-deoxy-D-gluconate 3-dehydrog | 1e-04 | |
| PRK07102 | 243 | PRK07102, PRK07102, short chain dehydrogenase; Pro | 2e-04 | |
| PRK07985 | 294 | PRK07985, PRK07985, oxidoreductase; Provisional | 2e-04 | |
| PRK08339 | 263 | PRK08339, PRK08339, short chain dehydrogenase; Pro | 2e-04 | |
| cd08936 | 256 | cd08936, CR_SDR_c, Porcine peroxisomal carbonyl re | 2e-04 | |
| PRK12859 | 256 | PRK12859, PRK12859, 3-ketoacyl-(acyl-carrier-prote | 2e-04 | |
| PRK09134 | 258 | PRK09134, PRK09134, short chain dehydrogenase; Pro | 3e-04 | |
| PRK08642 | 253 | PRK08642, fabG, 3-ketoacyl-(acyl-carrier-protein) | 3e-04 | |
| PRK07577 | 234 | PRK07577, PRK07577, short chain dehydrogenase; Pro | 3e-04 | |
| cd05322 | 257 | cd05322, SDH_SDR_c_like, Sorbitol 6-phosphate dehy | 3e-04 | |
| PRK12938 | 246 | PRK12938, PRK12938, acetyacetyl-CoA reductase; Pro | 4e-04 | |
| TIGR01500 | 256 | TIGR01500, sepiapter_red, sepiapterin reductase | 6e-04 | |
| cd05373 | 238 | cd05373, SDR_c10, classical (c) SDR, subgroup 10 | 7e-04 | |
| PRK08267 | 260 | PRK08267, PRK08267, short chain dehydrogenase; Pro | 8e-04 | |
| PRK06114 | 254 | PRK06114, PRK06114, short chain dehydrogenase; Pro | 0.001 | |
| PRK07831 | 262 | PRK07831, PRK07831, short chain dehydrogenase; Pro | 0.001 | |
| PRK07074 | 257 | PRK07074, PRK07074, short chain dehydrogenase; Pro | 0.001 | |
| PRK08993 | 253 | PRK08993, PRK08993, 2-deoxy-D-gluconate 3-dehydrog | 0.001 | |
| COG0451 | 314 | COG0451, WcaG, Nucleoside-diphosphate-sugar epimer | 0.001 | |
| PRK06940 | 275 | PRK06940, PRK06940, short chain dehydrogenase; Pro | 0.002 | |
| PRK08251 | 248 | PRK08251, PRK08251, short chain dehydrogenase; Pro | 0.002 | |
| PRK07856 | 252 | PRK07856, PRK07856, short chain dehydrogenase; Pro | 0.003 | |
| PRK12748 | 256 | PRK12748, PRK12748, 3-ketoacyl-(acyl-carrier-prote | 0.003 |
| >gnl|CDD|212495 cd09807, retinol-DH_like_SDR_c, retinol dehydrogenases (retinol-DHs), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 306 bits (786), Expect = e-104
Identities = 137/309 (44%), Positives = 178/309 (57%), Gaps = 59/309 (19%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVI 75
GKT I+TG+NTGIGK TA ELA+RGARVIMACR + K E AA +IR + EV++
Sbjct: 1 GKTVIITGANTGIGKETARELARRGARVIMACRDMAKCEEAAAEIRRDTLN----HEVIV 56
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLF 135
R LDL+SLKS+R A E L E + +LINNAGVM CP TEDG+E+QF NHLGH+L
Sbjct: 57 RHLDLASLKSIRAFAAEFLAEEDRLDVLINNAGVMRCPYSKTEDGFEMQFGVNHLGHFLL 116
Query: 136 TLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTT 195
T LLL + KSAP+RI+N+SSLAH G ++F+D+N EK Y+ AY +SKLAN+LFT
Sbjct: 117 TNLLLDLLKKSAPSRIVNVSSLAHKAGK--INFDDLNSEKSYNTGFAYCQSKLANVLFTR 174
Query: 196 ELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGAN 255
ELA+RLQ G
Sbjct: 175 ELARRLQ--------------------------------------------------GTG 184
Query: 256 ITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKC 315
+T A+HPGVV TEL RH + L + F+K+P +GAQT++Y AL ++
Sbjct: 185 VT---VNALHPGVVRTELGRHTGIHHLFLSTLLNPLFWPFVKTPREGAQTSIYLALAEEL 241
Query: 316 ERETGLYYA 324
E +G Y++
Sbjct: 242 EGVSGKYFS 250
|
Classical SDR-like subgroup containing retinol-DHs and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 274 |
| >gnl|CDD|212492 cd05327, retinol-DH_like_SDR_c_like, retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 297 bits (762), Expect = e-101
Identities = 132/310 (42%), Positives = 172/310 (55%), Gaps = 63/310 (20%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVI 75
GK ++TG+N+GIGK TA ELAKRGA VI+ACR+ EK E AA +I+ + +V +
Sbjct: 1 GKVVVITGANSGIGKETARELAKRGAHVIIACRNEEKGEEAAAEIKKETGN----AKVEV 56
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLF 135
QLDLSSL SVR+ A+E L + +LINNAG+M PR+LT+DG+ELQFA N+LGH+L
Sbjct: 57 IQLDLSSLASVRQFAEEFLARFPRLDILINNAGIMAPPRRLTKDGFELQFAVNYLGHFLL 116
Query: 136 TLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTT 195
T LLLP + SAP+RI+N+SS+AH G + D+ K YS AYG+SKLANILFT
Sbjct: 117 TNLLLPVLKASAPSRIVNVSSIAHRAGPIDFNDLDLENNKEYSPYKAYGQSKLANILFTR 176
Query: 196 ELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGAN 255
ELA+RL
Sbjct: 177 ELARRL-----------------------------------------------------E 183
Query: 256 ITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIK-SPLQGAQTTLYCALDKK 314
T V A+HPGVV TEL R G+ +L ++ F+K SP QGAQT LY A +
Sbjct: 184 GTGVTVNALHPGVVRTELLRRN-----GSFFLLYKLLRPFLKKSPEQGAQTALYAATSPE 238
Query: 315 CERETGLYYA 324
E +G Y++
Sbjct: 239 LEGVSGKYFS 248
|
Classical SDR subgroup containing retinol-DHs, LPORs, and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Pchlide reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14, dehydrogenase/reductase SDR family member (DHRS)-12 , -13 and -X (a DHRS on chromosome X), and WWOX (WW domain-containing oxidoreductase), as well as a Neurospora crassa SDR encoded by the blue light inducible bli-4 gene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 269 |
| >gnl|CDD|235737 PRK06197, PRK06197, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 243 bits (621), Expect = 5e-79
Identities = 110/299 (36%), Positives = 150/299 (50%), Gaps = 61/299 (20%)
Query: 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVV 74
G+ A+VTG+NTG+G TA LA +GA V++A R+L+K + AA I + +V
Sbjct: 15 SGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPG----ADVT 70
Query: 75 IRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYL 134
+++LDL+SL SVR A + I LLINNAGVM P+Q T DG+ELQF TNHLGH+
Sbjct: 71 LQELDLTSLASVRAAADALRAAYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFA 130
Query: 135 FTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFT 194
T LLL R++ +R++ +SS H ++HF+D+ E+ Y+ AYG+SKLAN+LFT
Sbjct: 131 LTGLLLDRLLPVPGSRVVTVSSGGHRIR-AAIHFDDLQWERRYNRVAAYGQSKLANLLFT 189
Query: 195 TELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGA 254
EL +RL GA
Sbjct: 190 YELQRRLA------------------------------------------------AAGA 201
Query: 255 NITNVNTYAVHPGVVDTELSRHFDSII-PGTAWLYQRVGGLFIKSPLQGAQTTLYCALD 312
V A HPGV +TEL+R+ + P L L +SP GA TL A D
Sbjct: 202 TTIAV---AAHPGVSNTELARNLPRALRPVATVL----APLLAQSPEMGALPTLRAATD 253
|
Length = 306 |
| >gnl|CDD|235736 PRK06196, PRK06196, oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 198 bits (506), Expect = 1e-61
Identities = 104/319 (32%), Positives = 139/319 (43%), Gaps = 72/319 (22%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L GKTAIVTG +G+G T LA+ GA VI+ R + A A I V
Sbjct: 24 LSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGID----------GV 73
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHY 133
+ LDL+ L+SVR A+ LD+ I +LINNAGVM CP DG+E QFATNHLGH+
Sbjct: 74 EVVMLDLADLESVRAFAERFLDSGRRIDILINNAGVMACPETRVGDGWEAQFATNHLGHF 133
Query: 134 LFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILF 193
LL P + A AR++ LSS H + ++D + +GY AYG+SK AN LF
Sbjct: 134 ALVNLLWPALAAGAGARVVALSSAGHRRSP--IRWDDPHFTRGYDKWLAYGQSKTANALF 191
Query: 194 TTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPG 253
L K LG+ +
Sbjct: 192 AVHLDK------------------LGKDQ------------------------------- 202
Query: 254 ANITNVNTYAVHPGVVDTELSRHF---DSIIPGTAWLYQ--RVGGLFIKSPLQGAQTTLY 308
V ++VHPG + T L RH + + G W+ + K+P QGA T ++
Sbjct: 203 ----GVRAFSVHPGGILTPLQRHLPREEQVALG--WVDEHGNPIDPGFKTPAQGAATQVW 256
Query: 309 CALDKKCERETGLYYAKAD 327
A + GLY D
Sbjct: 257 AATSPQLAGMGGLYCEDCD 275
|
Length = 315 |
| >gnl|CDD|235627 PRK05854, PRK05854, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 184 bits (470), Expect = 2e-56
Identities = 85/188 (45%), Positives = 118/188 (62%), Gaps = 8/188 (4%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L GK A+VTG++ G+G A LA GA VI+ R+ K E A IRT++ D K +
Sbjct: 12 LSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAK----L 67
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCP-RQLTEDGYELQFATNHLGH 132
+R LDLSSL SV +++ IHLLINNAGVM P RQ T DG+ELQF TNHLGH
Sbjct: 68 SLRALDLSSLASVAALGEQLRAEGRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGH 127
Query: 133 YLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANIL 192
+ T LLP ++++ AR+ + SS+A G+++++D+N E+ Y+ AY +SK+A L
Sbjct: 128 FALTAHLLP-LLRAGRARVTSQSSIAAR--RGAINWDDLNWERSYAGMRAYSQSKIAVGL 184
Query: 193 FTTELAKR 200
F EL +R
Sbjct: 185 FALELDRR 192
|
Length = 313 |
| >gnl|CDD|187669 cd09809, human_WWOX_like_SDR_c-like, human WWOX (WW domain-containing oxidoreductase)-like, classical (c)-like SDRs | Back alignment and domain information |
|---|
Score = 155 bits (392), Expect = 4e-45
Identities = 102/318 (32%), Positives = 150/318 (47%), Gaps = 75/318 (23%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVI 75
GK I+TG+N+GIG TA A GA VI+ACR++ +A A I + V
Sbjct: 1 GKVIIITGANSGIGFETARSFALHGAHVILACRNMSRASAAVSRILEEWHKAR----VEA 56
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLF 135
LDL+SL+SV++ A+ S +H+L+ NA V P LTEDG E F NHLGH+
Sbjct: 57 MTLDLASLRSVQRFAEAFKAKNSPLHVLVCNAAVFALPWTLTEDGLETTFQVNHLGHFYL 116
Query: 136 TLLLLPRIIKSAPARIINLSSLAHTWGD-----GSMHFEDIN-LEKGYSATGAYGRSKLA 189
LL + +SAPAR+I +SS +H + D G++ F ++ +K Y + AY R+KL
Sbjct: 117 VQLLEDVLRRSAPARVIVVSSESHRFTDLPDSCGNLDFSLLSPPKKKYWSMLAYNRAKLC 176
Query: 190 NILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249
NILF+ EL +R S
Sbjct: 177 NILFSNELH-----------------------RRLS------------------------ 189
Query: 250 HPPGANITNVNTYAVHPG-VVDTELSRHFDSIIPGTAWLYQRVGGL---FIKSPLQGAQT 305
P G + + ++HPG ++ + + R++ W+Y + L F KS QGA T
Sbjct: 190 -PRG-----ITSNSLHPGNMMYSSIHRNW--------WVYTLLFTLARPFTKSMQQGAAT 235
Query: 306 TLYCALDKKCERETGLYY 323
T+YCA + E G+Y+
Sbjct: 236 TVYCATAPELEGLGGMYF 253
|
Classical-like SDR domain of human WWOX and related proteins. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 284 |
| >gnl|CDD|187668 cd09808, DHRS-12_like_SDR_c-like, human dehydrogenase/reductase SDR family member (DHRS)-12/FLJ13639-like, classical (c)-like SDRs | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 9e-35
Identities = 67/192 (34%), Positives = 104/192 (54%), Gaps = 21/192 (10%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG--EV 73
G++ ++TG+N+GIGK A +AKRG V M CR+ +AE A +I ++G +
Sbjct: 1 GRSFLITGANSGIGKAAALAIAKRGGTVHMVCRNQTRAEEARKEI------ETESGNQNI 54
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHY 133
+ +D+S K V + +E + +H+LINNAG M+ R+LTEDG E FATN LG Y
Sbjct: 55 FLHIVDMSDPKQVWEFVEEFKEEGKKLHVLINNAGCMVNKRELTEDGLEKNFATNTLGTY 114
Query: 134 LFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINL-----EKG-YSATGAYGRSK 187
+ T L+P + K R+I +SS G M + +N E+ + T Y ++K
Sbjct: 115 ILTTHLIPVLEKEEDPRVITVSS-------GGMLVQKLNTNNLQSERTAFDGTMVYAQNK 167
Query: 188 LANILFTTELAK 199
++ T + AK
Sbjct: 168 RQQVIMTEQWAK 179
|
Classical SDR-like subgroup containing human DHRS-12/FLJ13639, the 36K protein of zebrafish CNS myelin, and related proteins. DHRS-12/FLJ13639 is expressed in neurons and oligodendrocytes in the human cerebral cortex. Proteins in this subgroup share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 255 |
| >gnl|CDD|187670 cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs | Back alignment and domain information |
|---|
Score = 128 bits (322), Expect = 2e-34
Identities = 69/211 (32%), Positives = 97/211 (45%), Gaps = 33/211 (15%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVI 75
T ++TG+++G+G A LA+RG V+MACR KAE AA ++ +
Sbjct: 2 GTVVITGASSGLGLAAAKALARRGEWHVVMACRDFLKAEQAAQEV------GMPKDSYSV 55
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMM----CPRQLTEDGYELQFATNHLG 131
DL+SL SVR+ + L+ NA V + PR T DG+EL NHLG
Sbjct: 56 LHCDLASLDSVRQFVDNFRRTGRPLDALVCNAAVYLPTAKEPR-FTADGFELTVGVNHLG 114
Query: 132 HYLFTLLLLPRIIKS--APARIINLSSLAH-------------TWGDGSMH------FED 170
H+L T LLL + +S A RI+ + S+ H T GD F
Sbjct: 115 HFLLTNLLLEDLQRSENASPRIVIVGSITHNPNTLAGNVPPRATLGDLEGLAGGLKGFNS 174
Query: 171 INLEKGYSATGAYGRSKLANILFTTELAKRL 201
+ + AY SK+ N+L T EL +RL
Sbjct: 175 MIDGGEFEGAKAYKDSKVCNMLTTYELHRRL 205
|
Classical SDR-like subgroup containing LPOR and related proteins. Protochlorophyllide (Pchlide) reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 311 |
| >gnl|CDD|223959 COG1028, FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 124 bits (312), Expect = 1e-33
Identities = 63/195 (32%), Positives = 87/195 (44%), Gaps = 28/195 (14%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRS--LEKAETAADDIRTSLKDVKDA 70
L GK A+VTG+++GIG+ A LA+ GARV++A R E AE A I+
Sbjct: 2 DLSGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIKE-----AGG 56
Query: 71 GEVVIRQLDLSS-LKSVRKCAQEILDNESAIHLLINNAGVMMC---PRQLTEDGYELQFA 126
G D+S +SV + I +L+NNAG+ +LTE+ ++
Sbjct: 57 GRAAAVAADVSDDEESVEALVAAAEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVID 116
Query: 127 TNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRS 186
N LG +L T LP + K RI+N+SS+A G AY S
Sbjct: 117 VNLLGAFLLTRAALPLMKK---QRIVNISSVAGLGGPPGQ--------------AAYAAS 159
Query: 187 KLANILFTTELAKRL 201
K A I T LA L
Sbjct: 160 KAALIGLTKALALEL 174
|
Length = 251 |
| >gnl|CDD|212491 cd05233, SDR_c, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 1e-32
Identities = 55/186 (29%), Positives = 83/186 (44%), Gaps = 23/186 (12%)
Query: 19 AIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQL 78
A+VTG+++GIG+ A LA+ GA+V++A R+ E A G V Q
Sbjct: 1 ALVTGASSGIGRAIARRLAREGAKVVLADRNEEALAELAAIEA-------LGGNAVAVQA 53
Query: 79 DLSSLKSVRKCAQEILDNESAIHLLINNAGVM--MCPRQLTEDGYELQFATNHLGHYLFT 136
D+S + V +E L+ + +L+NNAG+ +LT++ ++ N G +L T
Sbjct: 54 DVSDEEDVEALVEEALEEFGRLDILVNNAGIARPGPLEELTDEDWDRVLDVNLTGVFLLT 113
Query: 137 LLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTE 196
LP + K RI+N+SS+A G AY SK A T
Sbjct: 114 RAALPHMKKQGGGRIVNISSVA-----GLR---------PLPGQAAYAASKAALEGLTRS 159
Query: 197 LAKRLQ 202
LA L
Sbjct: 160 LALELA 165
|
SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 234 |
| >gnl|CDD|180983 PRK07453, PRK07453, protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 2e-30
Identities = 74/214 (34%), Positives = 97/214 (45%), Gaps = 38/214 (17%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
T I+TG+++G+G A LAKRG VIMACR+L+KAE AA ++ I
Sbjct: 7 GTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGI------PPDSYTII 60
Query: 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTE-----DGYELQFATNHLG 131
+DL L SVR+ + + L+ NA V M P L E GYEL ATNHLG
Sbjct: 61 HIDLGDLDSVRRFVDDFRALGKPLDALVCNAAVYM-PL-LKEPLRSPQGYELSMATNHLG 118
Query: 132 HYLFTLLLLPRIIKS--APARIINLSSLAHTW---------------GDGSMHFEDINLE 174
H+L LLL + KS R++ L ++ GD S FE
Sbjct: 119 HFLLCNLLLEDLKKSPAPDPRLVILGTVTANPKELGGKIPIPAPADLGDLS-GFEAGFKA 177
Query: 175 -------KGYSATGAYGRSKLANILFTTELAKRL 201
K + AY SKL N+L EL +R
Sbjct: 178 PISMADGKKFKPGKAYKDSKLCNMLTMRELHRRY 211
|
Length = 322 |
| >gnl|CDD|187585 cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 6e-26
Identities = 75/315 (23%), Positives = 113/315 (35%), Gaps = 102/315 (32%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGE-VV 74
K A+VTG+N GIG +LAK G VI+ R +E+ + A + ++ G V
Sbjct: 1 KVALVTGANRGIGFEIVRQLAKSGPGTVILTARDVERGQAAV-------EKLRAEGLSVR 53
Query: 75 IRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMM---CPRQLTEDGYELQFATNHLG 131
QLD++ S+ A + + + +L+NNAG+ T + TN G
Sbjct: 54 FHQLDVTDDASIEAAADFVEEKYGGLDILVNNAGIAFKGFDDSTPTREQARETMKTNFFG 113
Query: 132 HYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANI 191
T LLP + KS RI+N+SS GS+ T AYG SK A
Sbjct: 114 TVDVTQALLPLLKKSPAGRIVNVSSGL-----GSL-------------TSAYGVSKAA-- 153
Query: 192 LFTTELAKRLQVN-FSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250
+N +R + L +
Sbjct: 154 -----------LNALTRILAKELKE----------------------------------- 167
Query: 251 PPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCA 310
T + A PG V T++ G A K+P +GA+T +Y A
Sbjct: 168 ------TGIKVNACCPGWVKTDMG-------GGKAP----------KTPEEGAETPVYLA 204
Query: 311 LDKKCERETGLYYAK 325
L TG +++
Sbjct: 205 LLPPDGEPTGKFFSD 219
|
PTCR is a classical SDR which catalyzes the NADPH-dependent reduction of ketones on steroids and prostaglandins. Unlike most SDRs, PTCR functions as a monomer. This subgroup also includes human carbonyl reductase 1 (CBR1) and CBR3. CBR1 is an NADPH-dependent SDR with broad substrate specificity and may be responsible for the in vivo reduction of quinones, prostaglandins, and other carbonyl-containing compounds. In addition it includes poppy NADPH-dependent salutaridine reductase which catalyzes the stereospecific reduction of salutaridine to 7(S)-salutaridinol in the biosynthesis of morphine, and Arabidopsis SDR1,a menthone reductase, which catalyzes the reduction of menthone to neomenthol, a compound with antimicrobial activity; SDR1 can also carry out neomenthol oxidation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 225 |
| >gnl|CDD|200089 TIGR01289, LPOR, light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 9e-26
Identities = 69/213 (32%), Positives = 92/213 (43%), Gaps = 41/213 (19%)
Query: 18 TAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
T I+TG+++G+G A LA G VIMACR KAE AA + I
Sbjct: 5 TVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMP------KDSYTIM 58
Query: 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMC----PRQLTEDGYELQFATNHLGH 132
LDL SL SVR+ Q+ ++ + L+ NA V PR T DG+EL TNHLGH
Sbjct: 59 HLDLGSLDSVRQFVQQFRESGRPLDALVCNAAVYFPTAKEPR-FTADGFELSVGTNHLGH 117
Query: 133 YLFTLLLL----------PRII---------------KSAPARIINLSSLAHTWGDGSMH 167
+L LLL R+I A + +LS LA +
Sbjct: 118 FLLCNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAGNVPPKANLGDLSGLAAGFKAPIAM 177
Query: 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKR 200
+ K + AY SK+ N+L EL +R
Sbjct: 178 IDG----KEFKGAKAYKDSKVCNMLTVRELHRR 206
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 314 |
| >gnl|CDD|223377 COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 4e-25
Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 7/147 (4%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
+ GKTA++TG+++GIG A +LA+RG +I+ R +K E A ++ K EV
Sbjct: 4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELED-----KTGVEV 58
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM--MCPRQLTEDGYELQFATNHLG 131
+ DLS +++ + E+ + I +L+NNAG +L+ D E N L
Sbjct: 59 EVIPADLSDPEALERLEDELKERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILA 118
Query: 132 HYLFTLLLLPRIIKSAPARIINLSSLA 158
T +LP +++ IIN+ S A
Sbjct: 119 LTRLTKAVLPGMVERGAGHIINIGSAA 145
|
Length = 265 |
| >gnl|CDD|183775 PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 8e-25
Identities = 50/191 (26%), Positives = 85/191 (44%), Gaps = 21/191 (10%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L+G+ A+VTG+ GIG+ A LA GA VI+ + A A+ + G+
Sbjct: 3 DLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVE------AAGGK 56
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-MMCP-RQLTEDGYELQFATNHL 130
RQ+D+ +++ +++ + +L+ NAG+ + P ++ ++ +E N
Sbjct: 57 ARARQVDVRDRAALKAAVAAGVEDFGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLT 116
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
G +L T LP +I++ RI+ SS+A GY Y SK
Sbjct: 117 GTFLLTQAALPALIRAGGGRIVLTSSVA-------------GPRVGYPGLAHYAASKAGL 163
Query: 191 ILFTTELAKRL 201
+ FT LA L
Sbjct: 164 VGFTRALALEL 174
|
Length = 251 |
| >gnl|CDD|235506 PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 99 bits (250), Expect = 1e-24
Identities = 61/192 (31%), Positives = 95/192 (49%), Gaps = 23/192 (11%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMAC-RSLEKAETAADDIRTSLKDVKDAG 71
+L GK AIVTG++ GIG+ A LAK GA+V++A + E A+ ++I+ ++ G
Sbjct: 2 KLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIK------EEGG 55
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM-MCP-RQLTEDGYELQFATNH 129
+ + + D+SS + V ++I++ I +L+NNAG+ +T++ ++ N
Sbjct: 56 DAIAVKADVSSEEDVENLVEQIVEKFGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNL 115
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
G L T LP +IK I+N+SS WG G S Y SK A
Sbjct: 116 TGVMLLTRYALPYMIKRKSGVIVNISS---IWG-----------LIGASCEVLYSASKGA 161
Query: 190 NILFTTELAKRL 201
FT LAK L
Sbjct: 162 VNAFTKALAKEL 173
|
Length = 247 |
| >gnl|CDD|183833 PRK12939, PRK12939, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 97.7 bits (244), Expect = 8e-24
Identities = 54/190 (28%), Positives = 75/190 (39%), Gaps = 22/190 (11%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L GK A+VTG+ G+G A LA+ GA V +A A + + G
Sbjct: 5 LAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAA------GGRA 58
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNHLG 131
DL+ SV++ + L+NNAG+ +L D ++ N G
Sbjct: 59 HAIAADLADPASVQRFFDAAAAALGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRG 118
Query: 132 HYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANI 191
+L LP + S RI+NL+S WG K GAY SK A I
Sbjct: 119 TFLMLRAALPHLRDSGRGRIVNLASDTALWG----------APKL----GAYVASKGAVI 164
Query: 192 LFTTELAKRL 201
T LA+ L
Sbjct: 165 GMTRSLAREL 174
|
Length = 250 |
| >gnl|CDD|235975 PRK07231, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 97.6 bits (244), Expect = 9e-24
Identities = 56/195 (28%), Positives = 84/195 (43%), Gaps = 30/195 (15%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RL+GK AIVTG+++GIG+ A A GARV++ R+ E AE A +I G
Sbjct: 2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEIL-------AGGR 54
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV------MMCPRQLTEDGYELQFA 126
+ D+S V L+ ++ +L+NNAG ++ + E ++ FA
Sbjct: 55 AIAVAADVSDEADVEAAVAAALERFGSVDILVNNAGTTHRNGPLL---DVDEAEFDRIFA 111
Query: 127 TNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRS 186
N YL+T +P + I+N++S A + G Y S
Sbjct: 112 VNVKSPYLWTQAAVPAMRGEGGGAIVNVASTA------GLRPRP--------GLGWYNAS 157
Query: 187 KLANILFTTELAKRL 201
K A I T LA L
Sbjct: 158 KGAVITLTKALAAEL 172
|
Length = 251 |
| >gnl|CDD|235546 PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Score = 96.4 bits (241), Expect = 2e-23
Identities = 57/194 (29%), Positives = 91/194 (46%), Gaps = 26/194 (13%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L GKTA+VTG++ GIG+ A LA GA+V++ + E AE A ++R GE
Sbjct: 2 SLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELR------AAGGE 55
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV--MMCPRQLTEDGYELQFATNHL 130
+ D+S +VR + ++ A+ +L+NNAG+ +++E+ ++ N
Sbjct: 56 ARVLVFDVSDEAAVRALIEAAVEAFGALDILVNNAGITRDALLPRMSEEDWDRVIDVNLT 115
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
G + LP +IK+ RI+N+SS++ G G Y +K
Sbjct: 116 GTFNVVRAALPPMIKARYGRIVNISSVS-----GVT---------GNPGQTNYSAAKAGV 161
Query: 191 ILFT----TELAKR 200
I FT ELA R
Sbjct: 162 IGFTKALALELASR 175
|
Length = 246 |
| >gnl|CDD|187594 cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 93.8 bits (234), Expect = 2e-22
Identities = 55/191 (28%), Positives = 89/191 (46%), Gaps = 30/191 (15%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG-EVVI 75
K A+VTG++ GIG+ A LA GA+V + RS E A ++I K G
Sbjct: 1 KVALVTGASRGIGRAIALRLAAEGAKVAVTDRSEEAAAETVEEI-------KALGGNAAA 53
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFATNHL 130
+ D+S ++V +++ + +L+NNAG+ +M +++E+ ++ N
Sbjct: 54 LEADVSDREAVEALVEKVEAEFGPVDILVNNAGITRDNLLM---RMSEEDWDAVINVNLT 110
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
G + T ++ +IK RIIN+SS+ G+ N Y+A SK
Sbjct: 111 GVFNVTQAVIRAMIKRRSGRIINISSVVGLIGN----PGQAN----YAA------SKAGV 156
Query: 191 ILFTTELAKRL 201
I FT LAK L
Sbjct: 157 IGFTKSLAKEL 167
|
This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 240 |
| >gnl|CDD|235500 PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Score = 93.3 bits (233), Expect = 3e-22
Identities = 57/196 (29%), Positives = 91/196 (46%), Gaps = 29/196 (14%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLE-KAETAADDIRTSLKDVKDA 70
L+GK A+VTG++ GIG+ A LA +GA V++ S E AE +I
Sbjct: 1 MSLEGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIG------ALG 54
Query: 71 GEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM----MCPRQLTEDGYELQFA 126
G+ + Q D+S +SV + E + +L+NNAG+ + ++ E+ ++
Sbjct: 55 GKALAVQGDVSDAESVERAVDEAKAEFGGVDILVNNAGITRDNLL--MRMKEEDWDRVID 112
Query: 127 TNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGD-GSMHFEDINLEKGYSATGAYGR 185
TN G + T + ++K RIIN+SS+ G+ G + Y+A
Sbjct: 113 TNLTGVFNLTKAVARPMMKQRSGRIINISSVVGLMGNPGQAN---------YAA------ 157
Query: 186 SKLANILFTTELAKRL 201
SK I FT LA+ L
Sbjct: 158 SKAGVIGFTKSLAREL 173
|
Length = 248 |
| >gnl|CDD|187632 cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 4e-22
Identities = 43/144 (29%), Positives = 75/144 (52%), Gaps = 11/144 (7%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
K ++TG ++GIG A LA +G RVI R+ +K E+ + + +L EV+
Sbjct: 1 KVVLITGCSSGIGLALALALAAQGYRVIATARNPDKLESLGELLNDNL-------EVL-- 51
Query: 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMM-CP-RQLTEDGYELQFATNHLGHYL 134
+LD++ +S++ +E+++ I +L+NNAG + P + + + F N G
Sbjct: 52 ELDVTDEESIKAAVKEVIERFGRIDVLVNNAGYGLFGPLEETSIEEVRELFEVNVFGPLR 111
Query: 135 FTLLLLPRIIKSAPARIINLSSLA 158
T LP + K RI+N+SS+A
Sbjct: 112 VTRAFLPLMRKQGSGRIVNVSSVA 135
|
17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 248 |
| >gnl|CDD|226674 COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 5e-22
Identities = 48/152 (31%), Positives = 80/152 (52%), Gaps = 10/152 (6%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
T L GK A++TG+++GIG+ TA LA+ GA+V++A R E+ E AD+I AG
Sbjct: 2 TTLKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIG--------AG 53
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNH 129
+ LD++ +V + + + I +L+NNAG+ + + D ++ TN
Sbjct: 54 AALALALDVTDRAAVEAAIEALPEEFGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNV 113
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLAHTW 161
G T +LP +++ IINL S+A +
Sbjct: 114 KGLLNGTRAVLPGMVERKSGHIINLGSIAGRY 145
|
Length = 246 |
| >gnl|CDD|177654 PLN00015, PLN00015, protochlorophyllide reductase | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 1e-21
Identities = 50/132 (37%), Positives = 69/132 (52%), Gaps = 12/132 (9%)
Query: 20 IVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQL 78
I+TG+++G+G TA LA+ G V+MACR KAE AA + L
Sbjct: 1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGM------PKDSYTVMHL 54
Query: 79 DLSSLKSVRKCAQEILDNESAIHLLINNAGVMM----CPRQLTEDGYELQFATNHLGHYL 134
DL+SL SVR+ + + +L+ NA V + P T DG+EL TNHLGH+L
Sbjct: 55 DLASLDSVRQFVDNFRRSGRPLDVLVCNAAVYLPTAKEPT-FTADGFELSVGTNHLGHFL 113
Query: 135 FTLLLLPRIIKS 146
+ LLL + KS
Sbjct: 114 LSRLLLDDLKKS 125
|
Length = 308 |
| >gnl|CDD|187604 cd05346, SDR_c5, classical (c) SDR, subgroup 5 | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 4e-21
Identities = 54/189 (28%), Positives = 90/189 (47%), Gaps = 22/189 (11%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
KT ++TG+++GIG+ TA AK GA++I+ R E+ + AD++ +V+
Sbjct: 1 KTVLITGASSGIGEATARRFAKAGAKLILTGRRAERLQELADELGAKFP-----VKVLPL 55
Query: 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM--MCP-RQLTEDGYELQFATNHLGHY 133
QLD+S +S+ + + + I +L+NNAG+ + P ++ + +E TN G
Sbjct: 56 QLDVSDRESIEAALENLPEEFRDIDILVNNAGLALGLDPAQEADLEDWETMIDTNVKGLL 115
Query: 134 LFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILF 193
T L+LP +I IINL S+A + Y+ Y +K A F
Sbjct: 116 NVTRLILPIMIARNQGHIINLGSIAGRY--------------PYAGGNVYCATKAAVRQF 161
Query: 194 TTELAKRLQ 202
+ L K L
Sbjct: 162 SLNLRKDLI 170
|
These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 249 |
| >gnl|CDD|180744 PRK06914, PRK06914, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 4e-21
Identities = 54/176 (30%), Positives = 82/176 (46%), Gaps = 21/176 (11%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVI 75
K AIVTG+++G G T ELAK+G VI R+ EK E ++ + + + +
Sbjct: 3 KKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQE----NLLSQATQLNLQQNIKV 58
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHY 133
+QLD++ S+ Q +L I LL+NNAG ++ + Y QF TN G
Sbjct: 59 QQLDVTDQNSI-HNFQLVLKEIGRIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAI 117
Query: 134 LFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
T +LP + K +IIN+SS++ G + G+ Y SK A
Sbjct: 118 SVTQAVLPYMRKQKSGKIINISSIS-----GRV---------GFPGLSPYVSSKYA 159
|
Length = 280 |
| >gnl|CDD|236074 PRK07666, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 2e-20
Identities = 57/190 (30%), Positives = 87/190 (45%), Gaps = 28/190 (14%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L GK A++TG+ GIG+ A LAK G V + R+ E + A+++ VK V
Sbjct: 5 LQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAY--GVK----V 58
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFATN 128
VI D+S + V +++ + +I +LINNAG+ + +L +E N
Sbjct: 59 VIATADVSDYEEVTAAIEQLKNELGSIDILINNAGISKFGKFL---ELDPAEWEKIIQVN 115
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
+G Y T +LP +I+ IIN+SS A +KG + T AY SK
Sbjct: 116 LMGVYYATRAVLPSMIERQSGDIINISSTAG--------------QKGAAVTSAYSASKF 161
Query: 189 ANILFTTELA 198
+ T L
Sbjct: 162 GVLGLTESLM 171
|
Length = 239 |
| >gnl|CDD|187602 cd05344, BKR_like_SDR_like, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 6e-20
Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 14/148 (9%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVI 75
GK A+VT +++GIG A LA+ GARV + R+ E E AA ++R V+
Sbjct: 1 GKVALVTAASSGIGLAIARALAREGARVAICARNRENLERAASELRAGG------AGVLA 54
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQ-----LTEDGYELQFATNHL 130
DL+ + + + ++ D + +L+NNAG P LT++ + F L
Sbjct: 55 VVADLTDPEDIDRLVEKAGDAFGRVDILVNNAG---GPPPGPFAELTDEDWLEAFDLKLL 111
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLA 158
+LP + + RI+N+SSL
Sbjct: 112 SVIRIVRAVLPGMKERGWGRIVNISSLT 139
|
This subgroup resembles the SDR family, but does not have a perfect match to the NAD-binding motif or the catalytic tetrad characteristic of the SDRs. It includes the SDRs, Q9HYA2 from Pseudomonas aeruginosa PAO1 and APE0912 from Aeropyrum pernix K1. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 253 |
| >gnl|CDD|187643 cd08939, KDSR-like_SDR_c, 3-ketodihydrosphingosine reductase (KDSR) and related proteins, classical (c) SDR | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 1e-19
Identities = 43/145 (29%), Positives = 68/145 (46%), Gaps = 4/145 (2%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVI 75
GK ++TG ++GIGK A EL K GA VI+ RS K E A ++I +V
Sbjct: 1 GKHVLITGGSSGIGKALAKELVKEGANVIIVARSESKLEEAVEEIEAE--ANASGQKVSY 58
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHY 133
DLS + V + + ++ L++N AG+ + LT + +E N+ G
Sbjct: 59 ISADLSDYEEVEQAFAQAVEKGGPPDLVVNCAGISIPGLFEDLTAEEFERGMDVNYFGSL 118
Query: 134 LFTLLLLPRIIKSAPARIINLSSLA 158
+LP + + P I+ +SS A
Sbjct: 119 NVAHAVLPLMKEQRPGHIVFVSSQA 143
|
These proteins include members identified as KDSR, ribitol type dehydrogenase, and others. The group shows strong conservation of the active site tetrad and glycine rich NAD-binding motif of the classical SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 239 |
| >gnl|CDD|237218 PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 1e-19
Identities = 41/152 (26%), Positives = 72/152 (47%), Gaps = 11/152 (7%)
Query: 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRS-LEKAETAADDIRTSLKDVKD 69
L G+ A+VTG+ G+G+ A LA+ GA V++ RS E AE + V+
Sbjct: 1 MGSLMGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELV-------EAVEA 53
Query: 70 AG-EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM-MCP-RQLTEDGYELQFA 126
G Q D++ ++ ++ I +L+NNAG+ P +++D ++
Sbjct: 54 LGRRAQAVQADVTDKAALEAAVAAAVERFGRIDILVNNAGIFEDKPLADMSDDEWDEVID 113
Query: 127 TNHLGHYLFTLLLLPRIIKSAPARIINLSSLA 158
N G + ++P + K RI+N+SS+A
Sbjct: 114 VNLSGVFHLLRAVVPPMRKQRGGRIVNISSVA 145
|
Length = 249 |
| >gnl|CDD|187648 cd08944, SDR_c12, classical (c) SDR, subgroup 12 | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 2e-18
Identities = 58/191 (30%), Positives = 83/191 (43%), Gaps = 26/191 (13%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L+GK AIVTG+ GIG A LA+ GARV++A A+ I G +
Sbjct: 1 LEGKVAIVTGAGAGIGAACAARLAREGARVVVADIDGGAAQAVVAQI--------AGGAL 52
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTE---DGYELQFATNHL 130
+R +D++ + V + ++ + LL+NNAG M + + ++ A N
Sbjct: 53 ALR-VDVTDEQQVAALFERAVEEFGGLDLLVNNAGAMHLTPAIIDTDLAVWDQTMAINLR 111
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
G +L PR+I I+NLSS+A GD GAYG SK A
Sbjct: 112 GTFLCCRHAAPRMIARGGGSIVNLSSIAGQSGDP--------------GYGAYGASKAAI 157
Query: 191 ILFTTELAKRL 201
T LA L
Sbjct: 158 RNLTRTLAAEL 168
|
These are classical SDRs, with the canonical active site tetrad and glycine-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 246 |
| >gnl|CDD|236094 PRK07774, PRK07774, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 3e-18
Identities = 56/194 (28%), Positives = 81/194 (41%), Gaps = 28/194 (14%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
R D K AIVTG+ GIG+ A LA+ GA V++A + E AE A I V D G
Sbjct: 3 RFDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQI------VADGGT 56
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM--MCPRQLTE---DGYELQFAT 127
+ Q+D+S S + A + I L+NNA + M L D Y+ +
Sbjct: 57 AIAVQVDVSDPDSAKAMADATVSAFGGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSV 116
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
N G + T + + K I+N SS A + + YG +K
Sbjct: 117 NLDGALVCTRAVYKHMAKRGGGAIVNQSSTA-----------------AWLYSNFYGLAK 159
Query: 188 LANILFTTELAKRL 201
+ T +LA+ L
Sbjct: 160 VGLNGLTQQLAREL 173
|
Length = 250 |
| >gnl|CDD|181721 PRK09242, PRK09242, tropinone reductase; Provisional | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 4e-18
Identities = 54/189 (28%), Positives = 85/189 (44%), Gaps = 22/189 (11%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RLDG+TA++TG++ GIG A E GA V++ R + A R L + E
Sbjct: 6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQA----RDELAEEFPERE 61
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQL--TEDGYELQFATNHL 130
V D+S + R + D+ +H+L+NNAG + + TED + F TN
Sbjct: 62 VHGLAADVSDDEDRRAILDWVEDHWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLF 121
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGA-YGRSKLA 189
+ + P + + A + I+N+ S++ G H +GA YG +K A
Sbjct: 122 SAFELSRYAHPLLKQHASSAIVNIGSVS-----GLTH----------VRSGAPYGMTKAA 166
Query: 190 NILFTTELA 198
+ T LA
Sbjct: 167 LLQMTRNLA 175
|
Length = 257 |
| >gnl|CDD|187627 cd05369, TER_DECR_SDR_a, Trans-2-enoyl-CoA reductase (TER) and 2,4-dienoyl-CoA reductase (DECR), atypical (a) SDR | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 4e-18
Identities = 49/155 (31%), Positives = 73/155 (47%), Gaps = 10/155 (6%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L GK A +TG TGIGK A A+ GA V +A R E E AA++I ++ G
Sbjct: 1 LKGKVAFITGGGTGIGKAIAKAFAELGASVAIAGRKPEVLEAAAEEISSAT-----GGRA 55
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNA-GVMMCP-RQLTEDGYELQFATNHLG 131
Q D+ ++V E L I +LINNA G + P L+ +G++ + G
Sbjct: 56 HPIQCDVRDPEAVEAAVDETLKEFGKIDILINNAAGNFLAPAESLSPNGFKTVIDIDLNG 115
Query: 132 HYLFTLLLLPRIIKS-APARIINLSSLAHTWGDGS 165
+ T + R+I++ I+N+S A GS
Sbjct: 116 TFNTTKAVGKRLIEAKHGGSILNIS--ATYAYTGS 148
|
TTER is a peroxisomal protein with a proposed role in fatty acid elongation. Fatty acid synthesis is known to occur in the both endoplasmic reticulum and mitochondria; peroxisomal TER has been proposed as an additional fatty acid elongation system, it reduces the double bond at C-2 as the last step of elongation. This system resembles the mitochondrial system in that acetyl-CoA is used as a carbon donor. TER may also function in phytol metabolism, reducting phytenoyl-CoA to phytanoyl-CoA in peroxisomes. DECR processes double bonds in fatty acids to increase their utility in fatty acid metabolism; it reduces 2,4-dienoyl-CoA to an enoyl-CoA. DECR is active in mitochondria and peroxisomes. This subgroup has the Gly-rich NAD-binding motif of the classical SDR family, but does not display strong identity to the canonical active site tetrad, and lacks the characteristic Tyr at the usual position. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 249 |
| >gnl|CDD|187645 cd08941, 3KS_SDR_c, 3-keto steroid reductase, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 1e-17
Identities = 61/237 (25%), Positives = 93/237 (39%), Gaps = 49/237 (20%)
Query: 17 KTAIVTGSNTGIG-----KCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
K +VTG+N+G+G + A + +I+ACR+L++AE A + S D +
Sbjct: 2 KVVLVTGANSGLGLAICERLLAEDDENPELTLILACRNLQRAEAACRALLASHPDARVVF 61
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCP------------------ 113
+ V +DLS++ SV A+E+ + L NAG+M P
Sbjct: 62 DYV--LVDLSNMVSVFAAAKELKKRYPRLDYLYLNAGIMPNPGIDWIGAIKEVLTNPLFA 119
Query: 114 -----------------RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLS 155
+ TEDG F TN GHY L P + +S ++II S
Sbjct: 120 VTNPTYKIQAEGLLSQGDKATEDGLGEVFQTNVFGHYYLIRELEPLLCRSDGGSQIIWTS 179
Query: 156 SLAHTWGDGSMHFEDINLEKGYSATGAYGRSK-LANILFTTELAKRLQVNFSRHYSC 211
SL + EDI KG Y SK L ++L K ++ +
Sbjct: 180 SLNAS--PKYFSLEDIQHLKG---PAPYSSSKYLVDLLSLALNRKFNKLGVYSYVVH 231
|
3-keto steroid reductase (in concert with other enzymes) catalyzes NADP-dependent sterol C-4 demethylation, as part of steroid biosynthesis. 3-keto reductase is a classical SDR, with a well conserved canonical active site tetrad and fairly well conserved characteristic NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 290 |
| >gnl|CDD|187628 cd05370, SDR_c2, classical (c) SDR, subgroup 2 | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 1e-17
Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 16/148 (10%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L G T ++TG +GIG A + + G VI+ R E+ A K+ +
Sbjct: 3 LTGNTVLITGGTSGIGLALARKFLEAGNTVIITGRREERLAEA----------KKELPNI 52
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTE-----DGYELQFATN 128
LD+ +SV A+ +L + +LINNAG+ P L + D + + TN
Sbjct: 53 HTIVLDVGDAESVEALAEALLSEYPNLDILINNAGIQR-PIDLRDPASDLDKADTEIDTN 111
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSS 156
+G LP + K A I+N+SS
Sbjct: 112 LIGPIRLIKAFLPHLKKQPEATIVNVSS 139
|
Short-chain dehydrogenases/reductases (SDRs, aka Tyrosine-dependent oxidoreductases) are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 228 |
| >gnl|CDD|187618 cd05360, SDR_c3, classical (c) SDR, subgroup 3 | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 2e-17
Identities = 56/186 (30%), Positives = 85/186 (45%), Gaps = 26/186 (13%)
Query: 20 IVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLD 79
++TG+++GIG+ TA A+RGA+V++A RS E A ++R GE + D
Sbjct: 4 VITGASSGIGRATALAFAERGAKVVLAARSAEALHELAREVREL------GGEAIAVVAD 57
Query: 80 LSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNHLGHYLFTL 137
++ V + A ++ I +NNAGV + R +T + + F N+LGH TL
Sbjct: 58 VADAAQVERAADTAVERFGRIDTWVNNAGVAVFGRFEDVTPEEFRRVFDVNYLGHVYGTL 117
Query: 138 LLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFT--- 194
LP + + +IN+ SL G S + AY SK A FT
Sbjct: 118 AALPHLRRRGGGALINVGSLL---GYRSAPLQ-----------AAYSASKHAVRGFTESL 163
Query: 195 -TELAK 199
ELA
Sbjct: 164 RAELAH 169
|
These proteins are members of the classical SDR family, with a canonical active site triad (and also active site Asn) and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 233 |
| >gnl|CDD|187620 cd05362, THN_reductase-like_SDR_c, tetrahydroxynaphthalene/trihydroxynaphthalene reductase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 5e-17
Identities = 56/192 (29%), Positives = 79/192 (41%), Gaps = 25/192 (13%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMA-CRSLEKAETAADDIRTSLKDVKDAGE 72
L GK A+VTG++ GIG+ A LA+ GA V++ S AE +I G+
Sbjct: 1 LAGKVALVTGASRGIGRAIAKRLARDGASVVVNYASSKAAAEEVVAEIE------AAGGK 54
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM-MCP-RQLTEDGYELQFATNHL 130
+ Q D+S V + + +L+NNAGVM P + +E+ ++ F N
Sbjct: 55 AIAVQADVSDPSQVARLFDAAEKAFGGVDILVNNAGVMLKKPIAETSEEEFDRMFTVNTK 114
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
G + R+ RIIN+SS GAY SK A
Sbjct: 115 GAFFVLQEAAKRL--RDGGRIINISSSL--------------TAAYTPNYGAYAGSKAAV 158
Query: 191 ILFTTELAKRLQ 202
FT LAK L
Sbjct: 159 EAFTRVLAKELG 170
|
1,3,6,8-tetrahydroxynaphthalene reductase (4HNR) of Magnaporthe grisea and the related 1,3,8-trihydroxynaphthalene reductase (3HNR) are typical members of the SDR family containing the canonical glycine rich NAD(P)-binding site and active site tetrad, and function in fungal melanin biosynthesis. This subgroup also includes an SDR from Norway spruce that may function to protect against both biotic and abitoic stress. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 243 |
| >gnl|CDD|187593 cd05332, 11beta-HSD1_like_SDR_c, 11beta-hydroxysteroid dehydrogenase type 1 (11beta-HSD1)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 8e-17
Identities = 45/149 (30%), Positives = 73/149 (48%), Gaps = 11/149 (7%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L GK I+TG+++GIG+ A LA+ GAR++++ R E+ E + A
Sbjct: 1 LQGKVVIITGASSGIGEELAYHLARLGARLVLSARREERLEEVKSECLE-----LGAPSP 55
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQL----TEDGYELQFATNH 129
+ LD+S L+ + +E L + +LINNAG+ M R L + D N+
Sbjct: 56 HVVPLDMSDLEDAEQVVEEALKLFGGLDILINNAGISM--RSLFHDTSIDVDRKIMEVNY 113
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLA 158
G T LP +I+ + I+ +SS+A
Sbjct: 114 FGPVALTKAALPHLIERSQGSIVVVSSIA 142
|
Human 11beta_HSD1 catalyzes the NADP(H)-dependent interconversion of cortisone and cortisol. This subgroup also includes human dehydrogenase/reductase SDR family member 7C (DHRS7C) and DHRS7B. These proteins have the GxxxGxG nucleotide binding motif and S-Y-K catalytic triad characteristic of the SDRs, but have an atypical C-terminal domain that contributes to homodimerization contacts. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257 |
| >gnl|CDD|187586 cd05325, carb_red_sniffer_like_SDR_c, carbonyl reductase sniffer-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 8e-17
Identities = 55/191 (28%), Positives = 85/191 (44%), Gaps = 28/191 (14%)
Query: 19 AIVTGSNTGIGKCTANELAKRG-ARVIMACRSLEKAETAADDIRTSLKDVKDAGE-VVIR 76
++TG++ GIG +L RG VI CR A T L + + + I
Sbjct: 1 VLITGASRGIGLELVRQLLARGNNTVIATCRDPSAA--------TELAALGASHSRLHIL 52
Query: 77 QLDLSSLKSVRKCAQEI--LDNESAIHLLINNAGV--MMCP-RQLTEDGYELQFATNHLG 131
+LD++ + + A+ + ++ + +LINNAG+ P ++ + F N LG
Sbjct: 53 ELDVTDEIA--ESAEAVAERLGDAGLDVLINNAGILHSYGPASEVDSEDLLEVFQVNVLG 110
Query: 132 HYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANI 191
L T LP ++K A A+IIN+SS GS+ D YS Y SK A
Sbjct: 111 PLLLTQAFLPLLLKGARAKIINISSRV-----GSI--GDNTSGGWYS----YRASKAALN 159
Query: 192 LFTTELAKRLQ 202
+ T LA L+
Sbjct: 160 MLTKSLAVELK 170
|
Sniffer is an NADPH-dependent carbonyl reductase of the classical SDR family. Studies in Drosophila melanogaster implicate Sniffer in the prevention of neurodegeneration due to aging and oxidative-stress. This subgroup also includes Rhodococcus sp. AD45 IsoH, which is an NAD-dependent 1-hydroxy-2-glutathionyl-2-methyl-3-butene dehydrogenase involved in isoprene metabolism, Aspergillus nidulans StcE encoded by a gene which is part of a proposed sterigmatocystin biosynthesis gene cluster, Bacillus circulans SANK 72073 BtrF encoded by a gene found in the butirosin biosynthesis gene cluster, and Aspergillus parasiticus nor-1 involved in the biosynthesis of aflatoxins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 233 |
| >gnl|CDD|235925 PRK07067, PRK07067, sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 1e-16
Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 14/150 (9%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RL GK A++TG+ +GIG+ A GARV++A +A AA +I + V
Sbjct: 3 RLQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIGPAAIAV----- 57
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM-MCP-RQLTEDGYELQFATNHL 130
LD++ S+ + ++ I +L NNA + M P ++ D Y+ FA N
Sbjct: 58 ----SLDVTRQDSIDRIVAAAVERFGGIDILFNNAALFDMAPILDISRDSYDRLFAVNVK 113
Query: 131 GHYLFTLLLLPR--IIKSAPARIINLSSLA 158
G F + + R + + +IIN++S A
Sbjct: 114 G-LFFLMQAVARHMVEQGRGGKIINMASQA 142
|
Length = 257 |
| >gnl|CDD|183832 PRK12935, PRK12935, acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Score = 77.4 bits (190), Expect = 2e-16
Identities = 53/192 (27%), Positives = 92/192 (47%), Gaps = 21/192 (10%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
+L+GK AIVTG GIGK LA+ GA+V++ S ++ AA+++ L +
Sbjct: 2 VQLNGKVAIVTGGAKGIGKAITVALAQEGAKVVINYNS---SKEAAENLVNELGK--EGH 56
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM--MCPRQLTEDGYELQFATNH 129
+V Q D+S ++ + +E +++ + +L+NNAG+ ++L + +E N
Sbjct: 57 DVYAVQADVSKVEDANRLVEEAVNHFGKVDILVNNAGITRDRTFKKLNREDWERVIDVNL 116
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
+ T +LP I ++ RII++SS+ I G+ T Y +K
Sbjct: 117 SSVFNTTSAVLPYITEAEEGRIISISSI-------------IGQAGGFGQTN-YSAAKAG 162
Query: 190 NILFTTELAKRL 201
+ FT LA L
Sbjct: 163 MLGFTKSLALEL 174
|
Length = 247 |
| >gnl|CDD|235631 PRK05866, PRK05866, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 2e-16
Identities = 48/183 (26%), Positives = 78/183 (42%), Gaps = 23/183 (12%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L GK ++TG+++GIG+ A + A+RGA V+ R + + AD I + G+
Sbjct: 37 DLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRA------GGD 90
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDG------YELQFA 126
+ DLS L +V ++ + +LINNAG + R+ + E
Sbjct: 91 AMAVPCDLSDLDAVDALVADVEKRIGGVDILINNAGRSI--RRPLAESLDRWHDVERTMV 148
Query: 127 TNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWG---DGSMHFEDINLEKGYSATGAY 183
N+ L P +++ IIN++ TWG + S F N K +A A
Sbjct: 149 LNYYAPLRLIRGLAPGMLERGDGHIINVA----TWGVLSEASPLFSVYNASK--AALSAV 202
Query: 184 GRS 186
R
Sbjct: 203 SRV 205
|
Length = 293 |
| >gnl|CDD|187646 cd08942, RhlG_SDR_c, RhlG and related beta-ketoacyl reductases, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 3e-16
Identities = 55/194 (28%), Positives = 85/194 (43%), Gaps = 26/194 (13%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
+ GK +VTG + GIG+ A + GARVI++ R E AA+++ GE
Sbjct: 4 VAGKIVLVTGGSRGIGRMIAQGFLEAGARVIISARKAEACADAAEELSA-------YGEC 56
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLG 131
+ DLSS + + + + + +L+NNAG E G++ N
Sbjct: 57 IAIPADLSSEEGIEALVARVAERSDRLDVLVNNAGATWGAPLEAFPESGWDKVMDINVKS 116
Query: 132 HYLFTLLLLPRIIKSA----PARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
+ T LLP + +A PAR+IN+ S+A G ++ +YG SK
Sbjct: 117 VFFLTQALLPLLRAAATAENPARVINIGSIAGIVVSGLENY-------------SYGASK 163
Query: 188 LANILFTTELAKRL 201
A T +LAK L
Sbjct: 164 AAVHQLTRKLAKEL 177
|
Pseudomonas aeruginosa RhlG is an SDR-family beta-ketoacyl reductase involved in Rhamnolipid biosynthesis. RhlG is similar to but distinct from the FabG family of beta-ketoacyl-acyl carrier protein (ACP) of type II fatty acid synthesis. RhlG and related proteins are classical SDRs, with a canonical active site tetrad and glycine-rich NAD(P)-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|236216 PRK08277, PRK08277, D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 3e-16
Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 25/163 (15%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L GK A++TG +G A ELA+ GA+V + R+ EKAE +I+ + GE
Sbjct: 8 LKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAA------GGEA 61
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCP------------------RQ 115
+ + D+ +S+ + Q+IL++ +LIN AG P
Sbjct: 62 LAVKADVLDKESLEQARQQILEDFGPCDILINGAGGNH-PKATTDNEFHELIEPTKTFFD 120
Query: 116 LTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLA 158
L E+G+E F N LG L T + ++ IIN+SS+
Sbjct: 121 LDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRKGGNIINISSMN 163
|
Length = 278 |
| >gnl|CDD|187597 cd05338, DHRS1_HSDL2-like_SDR_c, human dehydrogenase/reductase (SDR family) member 1 (DHRS1) and human hydroxysteroid dehydrogenase-like protein 2 (HSDL2), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 4e-16
Identities = 64/262 (24%), Positives = 100/262 (38%), Gaps = 43/262 (16%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADD-----IRTSLKDVK 68
L GK A VTG++ GIG+ A LAK GA V++A ++ + + + I + ++++
Sbjct: 1 LSGKVAFVTGASRGIGRAIALRLAKAGATVVVAAKTASEGDNGSAKSLPGTIEETAEEIE 60
Query: 69 DAG-EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDG----YEL 123
AG + + +D+ VR + +D + +L+NNAG + L ED ++L
Sbjct: 61 AAGGQALPIVVDVRDEDQVRALVEATVDQFGRLDILVNNAGAIW--LSLVEDTPAKRFDL 118
Query: 124 QFATNHLGHYLFTLLLLPRIIKSAPARIINLSS---LAHTWGDGSMHFEDINLEKGYSAT 180
N G YL + LP ++K+ I+N+S L GD
Sbjct: 119 MQRVNLRGTYLLSQAALPHMVKAGQGHILNISPPLSLRPARGD----------------- 161
Query: 181 GAYGRSKLANILFTTELAKRLQVNFSRH---YSCRLPKEILGRTKRFSNLTILLCDANLQ 237
AY K T LA RH + P + T + L D
Sbjct: 162 VAYAAGKAGMSRLTLGLAA----ELRRHGIAVNSLWPSTAI-ETPAATEL-SGGSDPARA 215
Query: 238 TPTNHYCKNVL--FHPPGANIT 257
VL P A T
Sbjct: 216 RSPEILSDAVLAILSRPAAERT 237
|
This subgroup includes human DHRS1 and human HSDL2 and related proteins. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. DHRS1 mRNA has been detected in many tissues, liver, heart, skeletal muscle, kidney and pancreas; a longer transcript is predominantly expressed in the liver , a shorter one in the heart. HSDL2 may play a part in fatty acid metabolism, as it is found in peroxisomes. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 246 |
| >gnl|CDD|181335 PRK08264, PRK08264, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 4e-16
Identities = 47/182 (25%), Positives = 68/182 (37%), Gaps = 35/182 (19%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGAR-VIMACRSLEKAETAADDIRTSLKDVKDA 70
+ GK +VTG+N GIG+ +L RGA V A R E
Sbjct: 2 MDIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTDLGPR----------- 50
Query: 71 GEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQL---TEDGYELQFAT 127
VV QLD++ SV A+ D + +L+NNAG+ L ED + T
Sbjct: 51 --VVPLQLDVTDPASVAAAAEAASD----VTILVNNAGIFRTGSLLLEGDEDALRAEMET 104
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
N+ G P + + I+N+ S+ +W + G Y SK
Sbjct: 105 NYFGPLAMARAFAPVLAANGGGAIVNVLSVL-SW-------------VNFPNLGTYSASK 150
Query: 188 LA 189
A
Sbjct: 151 AA 152
|
Length = 238 |
| >gnl|CDD|233590 TIGR01830, 3oxo_ACP_reduc, 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 5e-16
Identities = 59/193 (30%), Positives = 89/193 (46%), Gaps = 37/193 (19%)
Query: 19 AIVTGSNTGIGKCTANELAKRGARVIMACRS-LEKAETAADDIRTSLKDVKDAGEVVIRQ 77
A+VTG++ GIG+ A +LAK GA+VI+ RS E AE ++++ + +
Sbjct: 1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAY------GVKALGVV 54
Query: 78 LDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGY-----ELQF----ATN 128
D+S + V+ +EI + I +L+NNAG+ T D E + TN
Sbjct: 55 CDVSDREDVKAVVEEIEEELGPIDILVNNAGI-------TRDNLLMRMKEEDWDAVIDTN 107
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
G + T +L +IK RIIN+SS+ G+ + Y+A SK
Sbjct: 108 LTGVFNLTQAVLRIMIKQRSGRIINISSVVGLMGNAG--------QANYAA------SKA 153
Query: 189 ANILFTTELAKRL 201
I FT LAK L
Sbjct: 154 GVIGFTKSLAKEL 166
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 239 |
| >gnl|CDD|235962 PRK07201, PRK07201, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 5e-16
Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L GK ++TG+++GIG+ TA ++A+ GA V + R+ E + +IR G
Sbjct: 368 PLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRA------KGGT 421
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDG------YELQFA 126
DL+ +V ++IL + L+NNAG + R+ E+ YE A
Sbjct: 422 AHAYTCDLTDSAAVDHTVKDILAEHGHVDYLVNNAGRSI--RRSVENSTDRFHDYERTMA 479
Query: 127 TNHLGHYLFTLLLLPRIIKSAPARIINLSS 156
N+ G L LLP + + ++N+SS
Sbjct: 480 VNYFGAVRLILGLLPHMRERRFGHVVNVSS 509
|
Length = 657 |
| >gnl|CDD|187654 cd08951, DR_C-13_KR_SDR_c_like, daunorubicin C-13 ketoreductase (KR), classical (c)-like SDRs | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 6e-16
Identities = 59/194 (30%), Positives = 87/194 (44%), Gaps = 28/194 (14%)
Query: 21 VTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDL 80
+TGS+ G+G A L +G V++ RS ++A A A V+I DL
Sbjct: 12 ITGSSDGLGLAAARTLLHQGHEVVLHARSQKRAADAK-------AACPGAAGVLIG--DL 62
Query: 81 SSLKSVRKCAQEI--LDNESAIHLLINNAGVMMCPRQLTED-GYELQFATNHLGHYLFTL 137
SSL RK A ++ + A+ I+NAG++ P + T D G A N L Y+ T
Sbjct: 63 SSLAETRKLADQVNAIGRFDAV---IHNAGILSGPNRKTPDTGIPAMVAVNVLAPYVLTA 119
Query: 138 LLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEK-GYSATGAYGRSKLANILFTTE 196
L+ P R+I LSS H G+ S+ +DI+ G + + AY SK L
Sbjct: 120 LIRR------PKRLIYLSSGMHRGGNASL--DDIDWFNRGENDSPAYSDSK----LHVLT 167
Query: 197 LAKRLQVNFSRHYS 210
LA + + S
Sbjct: 168 LAAAVARRWKDVSS 181
|
Daunorubicin is a clinically important therapeutic compound used in some cancer treatments. Daunorubicin C-13 ketoreductase is member of the classical SDR family with a canonical glycine-rich NAD(P)-binding motif, but lacking a complete match to the active site tetrad characteristic of this group. The critical Tyr, plus the Lys and upstream Asn are present, but the catalytic Ser is replaced, generally by Gln. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 260 |
| >gnl|CDD|180761 PRK06935, PRK06935, 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 8e-16
Identities = 58/198 (29%), Positives = 89/198 (44%), Gaps = 26/198 (13%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
LDGK AIVTG NTG+G+ A LAK GA +I+ ET + ++ G
Sbjct: 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETR--------RLIEKEGR 63
Query: 73 -VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQL--TEDGYELQFATNH 129
V Q+DL+ +S K +E L+ I +L+NNAG + L ++ + N
Sbjct: 64 KVTFVQVDLTKPESAEKVVKEALEEFGKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINL 123
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSAT--GAYGRSK 187
Y + + + K +IIN++S+ + F+ Y+A+ G G +K
Sbjct: 124 NSVYHLSQAVAKVMAKQGSGKIINIASM--------LSFQGGKFVPAYTASKHGVAGLTK 175
Query: 188 LANILFTTELA-KRLQVN 204
F ELA +QVN
Sbjct: 176 ----AFANELAAYNIQVN 189
|
Length = 258 |
| >gnl|CDD|181198 PRK08017, PRK08017, oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 9e-16
Identities = 46/143 (32%), Positives = 72/143 (50%), Gaps = 15/143 (10%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
K+ ++TG ++GIG A EL +RG RV+ ACR K + A +
Sbjct: 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACR---KPDDVARMNSLGFTGI--------- 50
Query: 77 QLDLSSLKSVRKCAQEILD-NESAIHLLINNAGV-MMCPRQ-LTEDGYELQFATNHLGHY 133
LDL +SV + A E++ ++ ++ L NNAG + P ++ E QF+TN G +
Sbjct: 51 LLDLDDPESVERAADEVIALTDNRLYGLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTH 110
Query: 134 LFTLLLLPRIIKSAPARIINLSS 156
T+LLLP ++ RI+ SS
Sbjct: 111 QLTMLLLPAMLPHGEGRIVMTSS 133
|
Length = 256 |
| >gnl|CDD|187605 cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 1e-15
Identities = 57/200 (28%), Positives = 90/200 (45%), Gaps = 31/200 (15%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L GK A+VTG++ GIG A+ LA+ GA +++ R+ EKAE A I K+ E
Sbjct: 3 LKGKVALVTGASRGIGFGIASGLAEAGANIVINSRNEEKAEEAQQLIE------KEGVEA 56
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQF----ATNH 129
D+S ++++ + I ++ I +L+NNAG+ R E+ E ++ N
Sbjct: 57 TAFTCDVSDEEAIKAAVEAIEEDFGKIDILVNNAGI--IRRHPAEEFPEAEWRDVIDVNL 114
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
G + + + +IK +IIN+ S + E G AY SK
Sbjct: 115 NGVFFVSQAVARHMIKQGHGKIINICS--------------LLSELGGPPVPAYAASKGG 160
Query: 190 NILFT----TELAKR-LQVN 204
T TE A+ +QVN
Sbjct: 161 VAGLTKALATEWARHGIQVN 180
|
Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 248 |
| >gnl|CDD|187639 cd08934, CAD_SDR_c, clavulanic acid dehydrogenase (CAD), classical (c) SDR | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 1e-15
Identities = 45/147 (30%), Positives = 76/147 (51%), Gaps = 8/147 (5%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L GK A+VTG+++GIG+ TA LA GA V +A R +++ E AD++ G+
Sbjct: 1 LQGKVALVTGASSGIGEATARALAAEGAAVAIAARRVDRLEALADELEAE------GGKA 54
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQ--FATNHLG 131
++ +LD++ + V + ++ + +L+NNAG+M+ D + TN LG
Sbjct: 55 LVLELDVTDEQQVDAAVERTVEALGRLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLG 114
Query: 132 HYLFTLLLLPRIIKSAPARIINLSSLA 158
T LP + I+N+SS+A
Sbjct: 115 LMYTTHAALPHHLLRNKGTIVNISSVA 141
|
CAD catalyzes the NADP-dependent reduction of clavulanate-9-aldehyde to clavulanic acid, a beta-lactamase inhibitor. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 243 |
| >gnl|CDD|237100 PRK12429, PRK12429, 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 1e-15
Identities = 44/147 (29%), Positives = 73/147 (49%), Gaps = 10/147 (6%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L GK A+VTG+ +GIG A LAK GA+V++A + E A AA+ ++ K G+
Sbjct: 1 MLKGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQ------KAGGK 54
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAG---VMMCPRQLTEDGYELQFATNH 129
+ +D++ +++ ++ + +L+NNAG V TE ++ A
Sbjct: 55 AIGVAMDVTDEEAINAGIDYAVETFGGVDILVNNAGIQHVAPIEDFPTEK-WKKMIAIML 113
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSS 156
G +L T LP + RIIN++S
Sbjct: 114 DGAFLTTKAALPIMKAQGGGRIINMAS 140
|
Length = 258 |
| >gnl|CDD|181491 PRK08589, PRK08589, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 1e-15
Identities = 46/149 (30%), Positives = 77/149 (51%), Gaps = 11/149 (7%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RL+ K A++TG++TGIG+ +A LA+ GA V+ + E D I+ + G+
Sbjct: 3 RLENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIK------SNGGK 55
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTE---DGYELQFATNH 129
+D+S + V+ A EI + + +L NNAGV ++ E D ++ A +
Sbjct: 56 AKAYHVDISDEQQVKDFASEIKEQFGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDM 115
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLA 158
G +L T +LLP +++ IIN SS +
Sbjct: 116 RGTFLMTKMLLPLMMEQG-GSIINTSSFS 143
|
Length = 272 |
| >gnl|CDD|181305 PRK08226, PRK08226, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 2e-15
Identities = 49/188 (26%), Positives = 81/188 (43%), Gaps = 22/188 (11%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
+L GKTA++TG+ GIG+ A A+ GA +I+ S + E AD++
Sbjct: 3 KLTGKTALITGALQGIGEGIARVFARHGANLILLDIS-PEIEKLADEL------CGRGHR 55
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNHL 130
D+ SV + + E I +L+NNAGV ++++ + N
Sbjct: 56 CTAVVADVRDPASVAAAIKRAKEKEGRIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIK 115
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
G + T +LP +I RI+ +SS+ D+ + G + AY +K A
Sbjct: 116 GVWNVTKAVLPEMIARKDGRIVMMSSVTG----------DMVADPGET---AYALTKAAI 162
Query: 191 ILFTTELA 198
+ T LA
Sbjct: 163 VGLTKSLA 170
|
Length = 263 |
| >gnl|CDD|180448 PRK06182, PRK06182, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 2e-15
Identities = 47/148 (31%), Positives = 71/148 (47%), Gaps = 22/148 (14%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
K A+VTG+++GIGK TA LA +G V A R ++K ++D+ G +
Sbjct: 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARRVDK-----------MEDLASLGVHPLS 52
Query: 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAG------VMMCPRQLTEDGYELQFATNHL 130
LD++ S++ I+ E I +L+NNAG + P + E QF N
Sbjct: 53 -LDVTDEASIKAAVDTIIAEEGRIDVLVNNAGYGSYGAIEDVP--IDEARR--QFEVNLF 107
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLA 158
G T L+LP + RIIN+SS+
Sbjct: 108 GAARLTQLVLPHMRAQRSGRIINISSMG 135
|
Length = 273 |
| >gnl|CDD|187598 cd05339, 17beta-HSDXI-like_SDR_c, human 17-beta-hydroxysteroid dehydrogenase XI-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 3e-15
Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 36/185 (19%)
Query: 18 TAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQ 77
++TG +GIG+ A E AKRGA+V++ + + AE A+++R K G+V +
Sbjct: 1 IVLITGGGSGIGRLLALEFAKRGAKVVILDINEKGAEETANNVR------KAGGKVHYYK 54
Query: 78 LDLSSLKSVRKCAQEILDNESAIHLLINNAGVMM------CPRQLTEDGYELQFATNHLG 131
D+S + V + A++I + +LINNAGV+ P + E F N L
Sbjct: 55 CDVSKREEVYEAAKKIKKEVGDVTILINNAGVVSGKKLLELPDEEIEK----TFEVNTLA 110
Query: 132 HYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSAT---GAYGRSKL 188
H+ T LP +++ I+ ++S+A G + Y SK
Sbjct: 111 HFWTTKAFLPDMLERNHGHIVTIASVA-----------------GLISPAGLADYCASKA 153
Query: 189 ANILF 193
A + F
Sbjct: 154 AAVGF 158
|
17-beta-hydroxysteroid dehydrogenases (17betaHSD) are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. 17betaHSD type XI, a classical SDR, preferentially converts 3alpha-adiol to androsterone but not numerous other tested steroids. This subgroup of classical SDRs also includes members identified as retinol dehydrogenases, which convert retinol to retinal, a property that overlaps with 17betaHSD activity. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 243 |
| >gnl|CDD|180723 PRK06841, PRK06841, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 4e-15
Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 11/154 (7%)
Query: 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDA 70
L GK A+VTG +GIG A A +GARV + RS + AE AA + + K +
Sbjct: 10 AFDLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVAEVAAQLLGGNAKGL--- 66
Query: 71 GEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-MMCPRQ-LTEDGYELQFATN 128
D+S +SV ++ I +L+N+AGV ++ P + ++E+ ++ N
Sbjct: 67 ------VCDVSDSQSVEAAVAAVISAFGRIDILVNSAGVALLAPAEDVSEEDWDKTIDIN 120
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWG 162
G +L + +I + +I+NL+S A
Sbjct: 121 LKGSFLMAQAVGRHMIAAGGGKIVNLASQAGVVA 154
|
Length = 255 |
| >gnl|CDD|237220 PRK12828, PRK12828, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 5e-15
Identities = 46/195 (23%), Positives = 70/195 (35%), Gaps = 30/195 (15%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
L GK +TG G+G+ TA LA RGARV + R A + +L V
Sbjct: 3 HSLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRG-------AAPLSQTLPGVPADA 55
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNH 129
+ +DL ++ R+ E+ + L+N AG + D ++ + N
Sbjct: 56 LRIGG-IDLVDPQAARRAVDEVNRQFGRLDALVNIAGAFVWGTIADGDADTWDRMYGVNV 114
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSAT---GAYGRS 186
+ LP + S RI+N+ + A A GAY +
Sbjct: 115 KTTLNASKAALPALTASGGGRIVNIGAGA-----------------ALKAGPGMGAYAAA 157
Query: 187 KLANILFTTELAKRL 201
K T LA L
Sbjct: 158 KAGVARLTEALAAEL 172
|
Length = 239 |
| >gnl|CDD|187609 cd05351, XR_like_SDR_c, xylulose reductase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 6e-15
Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 17/152 (11%)
Query: 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKD 69
+ GK A+VTG+ GIG+ T LAK GARV+ R+ + SL V++
Sbjct: 1 MELDFAGKRALVTGAGKGIGRATVKALAKAGARVVAVSRTQADLD--------SL--VRE 50
Query: 70 AGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-MMCP-RQLTEDGYELQFAT 127
+ +DLS + + L + + LL+NNA V ++ P ++T++ ++ F
Sbjct: 51 CPGIEPVCVDLSDWDATEEA----LGSVGPVDLLVNNAAVAILQPFLEVTKEAFDRSFDV 106
Query: 128 NHLGHYLFTLLLLPRII-KSAPARIINLSSLA 158
N + ++ +I + P I+N+SS A
Sbjct: 107 NVRAVIHVSQIVARGMIARGVPGSIVNVSSQA 138
|
Members of this subgroup include proteins identified as L-xylulose reductase (XR) and carbonyl reductase; they are members of the SDR family. XR, catalyzes the NADP-dependent reduction of L-xyulose and other sugars. Tetrameric mouse carbonyl reductase is involved in the metabolism of biogenic and xenobiotic carbonyl compounds. This subgroup also includes tetrameric chicken liver D-erythrulose reductase, which catalyzes the reduction of D-erythrulose to D-threitol. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Length = 244 |
| >gnl|CDD|235990 PRK07326, PRK07326, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 6e-15
Identities = 44/149 (29%), Positives = 69/149 (46%), Gaps = 10/149 (6%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L GK A++TG + GIG A L G +V + R ++ E AA ++ + G V
Sbjct: 4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAA-------AELNNKGNV 56
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-MMCP-RQLTEDGYELQFATNHLG 131
+ D+ V++ I+ + +LI NAGV P +LT + + L TN G
Sbjct: 57 LGLAADVRDEADVQRAVDAIVAAFGGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTG 116
Query: 132 HYLFTLLLLPRIIKSAPARIINLSSLAHT 160
+ +P + + IIN+SSLA T
Sbjct: 117 AFYTIKAAVPALKRGGGY-IINISSLAGT 144
|
Length = 237 |
| >gnl|CDD|215720 pfam00106, adh_short, short chain dehydrogenase | Back alignment and domain information |
|---|
Score = 71.0 bits (175), Expect = 7e-15
Identities = 36/170 (21%), Positives = 64/170 (37%), Gaps = 19/170 (11%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG-EVVI 75
T ++TG G+G A LA GAR ++ A AA+ + +++ G EV +
Sbjct: 1 GTVLITGGTGGLGLALARWLAAEGARHLVLVSRRGPAPGAAELVA----ELEALGAEVTV 56
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM-MCPRQ-LTEDGYELQFATNHLGHY 133
D++ ++ + + +++NAGV+ P + LT + +E A G +
Sbjct: 57 AACDVADRDALAALLAALPAALGPLDGVVHNAGVLDDGPLEELTPERFERVLAPKVTGAW 116
Query: 134 LFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAY 183
L + SS+A G Y+A A
Sbjct: 117 NLHELTRDL----DLGAFVLFSSVAGVLGSPGQA--------NYAAANAA 154
|
This family contains a wide variety of dehydrogenases. Length = 167 |
| >gnl|CDD|187626 cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 8e-15
Identities = 50/188 (26%), Positives = 76/188 (40%), Gaps = 34/188 (18%)
Query: 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVV 74
DGK A++T + GIG+ A A+ GA VI A D LK+++ +
Sbjct: 1 DGKVALITAAAQGIGRAIALAFAREGANVI-----------ATDINEEKLKELERGPGIT 49
Query: 75 IRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR----QLTEDGYELQFATNHL 130
R LD++ + V A+E I +L N AG +D ++ N
Sbjct: 50 TRVLDVTDKEQVAALAKEE----GRIDVLFNCAGF--VHHGSILDCEDDDWDFAMNLNVR 103
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
YL +LP+++ IIN+SS+A S+ KG Y +K A
Sbjct: 104 SMYLMIKAVLPKMLARKDGSIINMSSVA-----SSI--------KGVPNRFVYSTTKAAV 150
Query: 191 ILFTTELA 198
I T +A
Sbjct: 151 IGLTKSVA 158
|
Human DHRS6, and similar proteins. These proteins are classical SDRs, with a canonical active site tetrad and a close match to the typical Gly-rich NAD-binding motif. Human DHRS6 is a cytosolic type 2 (R)-hydroxybutyrate dehydrogenase, which catalyses the conversion of (R)-hydroxybutyrate to acetoacetate. Also included in this subgroup is Escherichia coli UcpA (upstream cys P). Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Note: removed : needed to make this chiodl smaller when drew final trees: rmeoved text form description: Other proteins in this subgroup include Thermoplasma acidophilum aldohexose dehydrogenase, which has high dehydrogenase activity against D-mannose, Bacillus subtilis BacC involved in the biosynthesis of the dipeptide bacilysin and its antibiotic moiety anticapsin, Sphingomonas paucimobilis strain B90 LinC, involved in the degradation of hexachlorocyclohexane isomers...... P). Length = 241 |
| >gnl|CDD|187590 cd05329, TR_SDR_c, tropinone reductase-I and II (TR-1, and TR-II)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 9e-15
Identities = 49/173 (28%), Positives = 75/173 (43%), Gaps = 17/173 (9%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L+GKTA+VTG GIG ELA GA V R+ ++ + + R K K G
Sbjct: 3 NLEGKTALVTGGTKGIGYAIVEELAGLGAEVYTCARNQKELDECLTEWRE--KGFKVEGS 60
Query: 73 VVIRQLDLSSLKSVRKCAQEILDN-ESAIHLLINNAGVMMCPRQL--TEDGYELQFATNH 129
V D+SS ++ + + +++L+NNAG + TE+ Y L +TN
Sbjct: 61 VC----DVSSRSERQELMDTVASHFGGKLNILVNNAGTNIRKEAKDYTEEDYSLIMSTNF 116
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGA 182
Y + L P + S I+ +SS+A G + + Y AT
Sbjct: 117 EAAYHLSRLAHPLLKASGNGNIVFISSVA-----GVIA---VPSGAPYGATKG 161
|
This subgroup includes TR-I and TR-II; these proteins are members of the SDR family. TRs catalyze the NADPH-dependent reductions of the 3-carbonyl group of tropinone, to a beta-hydroxyl group. TR-I and TR-II produce different stereoisomers from tropinone, TR-I produces tropine (3alpha-hydroxytropane), and TR-II, produces pseudotropine (sigma-tropine, 3beta-hydroxytropane). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 251 |
| >gnl|CDD|187603 cd05345, BKR_3_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 3, classical (c) SDR | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 2e-14
Identities = 45/149 (30%), Positives = 73/149 (48%), Gaps = 12/149 (8%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RL+GK AIVTG+ +G G+ A A+ GARV++A + + AE A DI
Sbjct: 2 RLEGKVAIVTGAGSGFGEGIARRFAQEGARVVIADINADGAERVAADI---------GEA 52
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR---QLTEDGYELQFATNH 129
+ Q D++ V + L + +L+NNAG+ + ++ E+ ++ FA N
Sbjct: 53 AIAIQADVTKRADVEAMVEAALSKFGRLDILVNNAGITHRNKPMLEVDEEEFDRVFAVNV 112
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLA 158
YL L+P + + IIN++S A
Sbjct: 113 KSIYLSAQALVPHMEEQGGGVIINIASTA 141
|
This subgroup includes the putative Brucella melitensis biovar Abortus 2308 BKR, FabG, Mesorhizobium loti MAFF303099 FabG, and other classical SDRs. BKR, a member of the SDR family, catalyzes the NADPH-dependent reduction of acyl carrier protein in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of 4 elongation steps, which are repeated to extend the fatty acid chain thru the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I Fas utilizes one or 2 multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 248 |
| >gnl|CDD|187616 cd05358, GlcDH_SDR_c, glucose 1 dehydrogenase (GlcDH), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 2e-14
Identities = 45/147 (30%), Positives = 72/147 (48%), Gaps = 10/147 (6%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRS-LEKAETAADDIRTSLKDVKDAGE 72
L GK A+VTG+++GIGK A LA GA V++ RS + AE ++I+ G+
Sbjct: 1 LKGKVALVTGASSGIGKAIAIRLATAGANVVVNYRSKEDAAEEVVEEIK------AVGGK 54
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM--MCPRQLTEDGYELQFATNHL 130
+ Q D+S + V Q + + +L+NNAG+ ++T + + N
Sbjct: 55 AIAVQADVSKEEDVVALFQSAIKEFGTLDILVNNAGLQGDASSHEMTLEDWNKVIDVNLT 114
Query: 131 GHYLFTLLLLPRIIKS-APARIINLSS 156
G +L + R KS +IIN+SS
Sbjct: 115 GQFLCAREAIKRFRKSKIKGKIINMSS 141
|
GlcDH, is a tetrameric member of the SDR family, it catalyzes the NAD(P)-dependent oxidation of beta-D-glucose to D-glucono-delta-lactone. GlcDH has a typical NAD-binding site glycine-rich pattern as well as the canonical active site tetrad (YXXXK motif plus upstream Ser and Asn). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 253 |
| >gnl|CDD|180984 PRK07454, PRK07454, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 2e-14
Identities = 51/188 (27%), Positives = 80/188 (42%), Gaps = 30/188 (15%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
A++TG+++GIGK TA AK G + + RS + E A ++R++ +
Sbjct: 7 PRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRST------GVKAAAY 60
Query: 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTE---DGYELQFATNHLGHY 133
+DLS+ +++ E+L+ +LINNAG M L E ++ N +
Sbjct: 61 SIDLSNPEAIAPGIAELLEQFGCPDVLINNAG-MAYTGPLLEMPLSDWQWVIQLNLTSVF 119
Query: 134 LFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSAT---GAYGRSKLAN 190
+LP + IIN+SS+A +A GAY SK A
Sbjct: 120 QCCSAVLPGMRARGGGLIINVSSIA-----------------ARNAFPQWGAYCVSKAAL 162
Query: 191 ILFTTELA 198
FT LA
Sbjct: 163 AAFTKCLA 170
|
Length = 241 |
| >gnl|CDD|235924 PRK07063, PRK07063, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 5e-14
Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 6/146 (4%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RL GK A+VTG+ GIG A A+ GA V +A AE AA I +
Sbjct: 4 RLAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAG----AR 59
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAG--VMMCPRQLTEDGYELQFATNHL 130
V+ D++ SV + + +L+NNAG V P +T++ + FA +
Sbjct: 60 VLAVPADVTDAASVAAAVAAAEEAFGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLD 119
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSS 156
G + +LP +++ I+N++S
Sbjct: 120 GAWNGCRAVLPGMVERGRGSIVNIAS 145
|
Length = 260 |
| >gnl|CDD|180773 PRK06949, PRK06949, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 6e-14
Identities = 45/155 (29%), Positives = 80/155 (51%), Gaps = 16/155 (10%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L+GK A+VTG+++G+G A LA+ GA+V++A R +E+ + ++R ++ A V
Sbjct: 7 LEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLK----ELRAEIEAEGGAAHV 62
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNHLG 131
V LD++ +S++ I +L+NN+GV + +T ++ F TN G
Sbjct: 63 V--SLDVTDYQSIKAAVAHAETEAGTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRG 120
Query: 132 HYLFTLLLLPRIIKSA--------PARIINLSSLA 158
+ + R+I A RIIN++S+A
Sbjct: 121 AFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVA 155
|
Length = 258 |
| >gnl|CDD|235712 PRK06138, PRK06138, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 7e-14
Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 9/146 (6%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RL G+ AIVTG+ +GIG+ TA A+ GARV++A R E AE A I G
Sbjct: 2 RLAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAA-------GGR 54
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLT--EDGYELQFATNHL 130
RQ D+ S ++V + + +L+NNAG +T E ++ N
Sbjct: 55 AFARQGDVGSAEAVEALVDFVAARWGRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVG 114
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSS 156
G +L+ +P + + I+N +S
Sbjct: 115 GVFLWAKYAIPIMQRQGGGSIVNTAS 140
|
Length = 252 |
| >gnl|CDD|187623 cd05365, 7_alpha_HSDH_SDR_c, 7 alpha-hydroxysteroid dehydrogenase (7 alpha-HSDH), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 1e-13
Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 9/143 (6%)
Query: 19 AIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQL 78
AIVTG GIGK A LAK GA V++A E AE A I+ + G+ + +
Sbjct: 2 AIVTGGAAGIGKAIAGTLAKAGASVVIADLKSEGAEAVAAAIQ------QAGGQAIGLEC 55
Query: 79 DLSSLKSVRKCAQEILDNESAIHLLINNA---GVMMCPRQLTEDGYELQFATNHLGHYLF 135
+++S + + + + I +L+NNA G +TE+ +E F N +
Sbjct: 56 NVTSEQDLEAVVKATVSQFGGITILVNNAGGGGPKPFDMPMTEEDFEWAFKLNLFSAFRL 115
Query: 136 TLLLLPRIIKSAPARIINLSSLA 158
+ L P + K+ I+N+SS++
Sbjct: 116 SQLCAPHMQKAGGGAILNISSMS 138
|
This bacterial subgroup contains 7 alpha-HSDHs, including Escherichia coli 7 alpha-HSDH. 7 alpha-HSDH, a member of the SDR family, catalyzes the NAD+ -dependent dehydrogenation of a hydroxyl group at position 7 of the steroid skeleton of bile acids. In humans the two primary bile acids are cholic and chenodeoxycholic acids, these are formed from cholesterol in the liver. Escherichia coli 7 alpha-HSDH dehydroxylates these bile acids in the human intestine. Mammalian 7 alpha-HSDH activity has been found in livers. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 242 |
| >gnl|CDD|181136 PRK07825, PRK07825, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 1e-13
Identities = 43/148 (29%), Positives = 62/148 (41%), Gaps = 12/148 (8%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L GK +TG GIG TA LA GARV + A+ A ++ G
Sbjct: 2 DLRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAEL----------GL 51
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQL--TEDGYELQFATNHL 130
VV LD++ S + + I +L+NNAGVM L + N
Sbjct: 52 VVGGPLDVTDPASFAAFLDAVEADLGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVY 111
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLA 158
G L + L PR++ ++N++SLA
Sbjct: 112 GVILGSKLAAPRMVPRGRGHVVNVASLA 139
|
Length = 273 |
| >gnl|CDD|235935 PRK07109, PRK07109, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 1e-13
Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 8/148 (5%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
+ + ++TG++ G+G+ TA A+RGA+V++ R E E A +IR + GE
Sbjct: 5 PIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAA------GGE 58
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-MMCP-RQLTEDGYELQFATNHL 130
+ D++ ++V+ A + I +NNA V + P +T + + +L
Sbjct: 59 ALAVVADVADAEAVQAAADRAEEELGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYL 118
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLA 158
G TL L + II + S
Sbjct: 119 GVVHGTLAALRHMRPRDRGAIIQVGSAL 146
|
Length = 334 |
| >gnl|CDD|187584 cd05323, ADH_SDR_c_like, insect type alcohol dehydrogenase (ADH)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 1e-13
Identities = 50/197 (25%), Positives = 81/197 (41%), Gaps = 29/197 (14%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
K AI+TG +GIG TA L K+GA+V + R+ A L+ + +
Sbjct: 1 KVAIITGGASGIGLATAKLLLKKGAKVAILDRNENPGAAAE------LQAINPKVKATFV 54
Query: 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFATNHLG 131
Q D++S + + ++ ++ + +LINNAG+ + +L +E N G
Sbjct: 55 QCDVTSWEQLAAAFKKAIEKFGRVDILINNAGILDEKSYLFAGKLPPP-WEKTIDVNLTG 113
Query: 132 HYLFTLLLLPRIIKSAP---ARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
T L L + K+ I+N+ S+A G + YSA SK
Sbjct: 114 VINTTYLALHYMDKNKGGKGGVIVNIGSVA---GLYPAPQFPV-----YSA------SKH 159
Query: 189 ANILFTTELAKRLQVNF 205
+ FT LA L+
Sbjct: 160 GVVGFTRSLADLLEYKT 176
|
This subgroup contains insect type ADH, and 15-hydroxyprostaglandin dehydrogenase (15-PGDH) type I; these proteins are classical SDRs. ADH catalyzes the NAD+-dependent oxidation of alcohols to aldehydes/ketones. This subgroup is distinct from the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase/reductase family, and evolved in fruit flies to allow the digestion of fermenting fruit. 15-PGDH catalyzes the NAD-dependent interconversion of (5Z,13E)-(15S)-11alpha,15-dihydroxy-9-oxoprost-13-enoate and (5Z,13E)-11alpha-hydroxy-9,15-dioxoprost-13-enoate, and has a typical SDR glycine-rich NAD-binding motif, which is not fully present in ADH. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 244 |
| >gnl|CDD|235816 PRK06500, PRK06500, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 2e-13
Identities = 56/201 (27%), Positives = 82/201 (40%), Gaps = 34/201 (16%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
+RL GKTA++TG +GIG TA + GARV + R E A R L
Sbjct: 2 SRLQGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAA----RAEL-----GE 52
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-MMCP-RQLTEDGYELQFATNH 129
++ + D + + + AQ + + + + NAGV P E ++ F TN
Sbjct: 53 SALVIRADAGDVAAQKALAQALAEAFGRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNV 112
Query: 130 LGHYLFTLLLLPRIIKSAPARII-NLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
G Y LLP + + PA I+ N S AH G + Y SK
Sbjct: 113 KGPYFLIQALLP--LLANPASIVLNGSINAHI---------------GMPNSSVYAASKA 155
Query: 189 ANI----LFTTELAKR-LQVN 204
A + + EL R ++VN
Sbjct: 156 ALLSLAKTLSGELLPRGIRVN 176
|
Length = 249 |
| >gnl|CDD|235693 PRK06077, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 2e-13
Identities = 53/198 (26%), Positives = 92/198 (46%), Gaps = 29/198 (14%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG-E 72
L K +VTGS GIG+ A LAK G+ V++ A+ A+++ +LK VK+ G E
Sbjct: 4 LKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVV------NAKKRAEEMNETLKMVKENGGE 57
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDG--YELQFATNHL 130
+ D+S+ + A+ +D +L+NNAG+ + L D + +T+
Sbjct: 58 GIGVLADVSTREGCETLAKATIDRYGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFK 117
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
++ L + ++ A I+N++S+A G +++ YG K A
Sbjct: 118 S-VIYCSQELAKEMREGGA-IVNIASVA-----GIRPAYGLSI---------YGAMKAAV 161
Query: 191 ILFTT----ELAKRLQVN 204
I T ELA +++VN
Sbjct: 162 INLTKYLALELAPKIRVN 179
|
Length = 252 |
| >gnl|CDD|187611 cd05353, hydroxyacyl-CoA-like_DH_SDR_c-like, (3R)-hydroxyacyl-CoA dehydrogenase-like, classical(c)-like SDRs | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 3e-13
Identities = 53/197 (26%), Positives = 92/197 (46%), Gaps = 32/197 (16%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIM-----ACRSLEKAETAADDIRTSLKDV 67
R DG+ +VTG+ G+G+ A A+RGA+V++ + K+ +AAD + +K
Sbjct: 2 RFDGRVVLVTGAGGGLGRAYALAFAERGAKVVVNDLGGDRKGSGKSSSAADKVVDEIK-- 59
Query: 68 KDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR-----QLTEDGYE 122
G+ V + S++ K + +D + +L+NNAG++ R +++E+ ++
Sbjct: 60 AAGGKAVA---NYDSVEDGEKIVKTAIDAFGRVDILVNNAGIL---RDRSFAKMSEEDWD 113
Query: 123 LQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGA 182
L + G + T P + K RIIN SS A +G+ F N YSA
Sbjct: 114 LVMRVHLKGSFKVTRAAWPYMRKQKFGRIINTSSAAGLYGN----FGQAN----YSA--- 162
Query: 183 YGRSKLANILFTTELAK 199
+KL + + LA
Sbjct: 163 ---AKLGLLGLSNTLAI 176
|
Beta oxidation of fatty acids in eukaryotes occurs by a four-reaction cycle, that may take place in mitochondria or in peroxisomes. (3R)-hydroxyacyl-CoA dehydrogenase is part of rat peroxisomal multifunctional MFE-2, it is a member of the NAD-dependent SDRs, but contains an additional small C-terminal domain that completes the active site pocket and participates in dimerization. The atypical, additional C-terminal extension allows for more extensive dimerization contact than other SDRs. MFE-2 catalyzes the second and third reactions of the peroxisomal beta oxidation cycle. Proteins in this subgroup have a typical catalytic triad, but have a His in place of the usual upstream Asn. This subgroup also contains members identified as 17-beta-hydroxysteroid dehydrogenases, including human peroxisomal 17-beta-hydroxysteroid dehydrogenase type 4 (17beta-HSD type 4, aka MFE-2, encoded by HSD17B4 gene) which is involved in fatty acid beta-oxidation and steroid metabolism. This subgroup also includes two SDR domains of the Neurospora crassa and Saccharomyces cerevisiae multifunctional beta-oxidation protein (MFP, aka Fox2). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 250 |
| >gnl|CDD|180576 PRK06463, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 4e-13
Identities = 49/190 (25%), Positives = 78/190 (41%), Gaps = 30/190 (15%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
R GK A++TG GIG+ A + GA+V + S E K++++ G
Sbjct: 4 RFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEA----------KELREKG- 52
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM--MCPRQLTEDGYELQFATNHL 130
V + D+ + V+K + + + +L+NNAG+M M + E+ Y N
Sbjct: 53 VFTIKCDVGNRDQVKKSKEVVEKEFGRVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLN 112
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGA--YGRSKL 188
G T LP + S I+N++S N G +A G Y +K
Sbjct: 113 GAIYTTYEFLPLLKLSKNGAIVNIAS---------------NAGIGTAAEGTTFYAITKA 157
Query: 189 ANILFTTELA 198
I+ T LA
Sbjct: 158 GIIILTRRLA 167
|
Length = 255 |
| >gnl|CDD|237187 PRK12743, PRK12743, oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 4e-13
Identities = 45/144 (31%), Positives = 72/144 (50%), Gaps = 10/144 (6%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEK-AETAADDIRTSLKDVKDAGEVVI 75
+ AIVT S++GIGK A LA++G + + S E+ A+ A+++R I
Sbjct: 3 QVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVR------SHGVRAEI 56
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQ--FATNHLGHY 133
RQLDLS L + +++ I +L+NNAG M L D E + F + G +
Sbjct: 57 RQLDLSDLPEGAQALDKLIQRLGRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAF 116
Query: 134 LFTLLLLPRIIKSA-PARIINLSS 156
L + + ++K RIIN++S
Sbjct: 117 LCSQIAARHMVKQGQGGRIINITS 140
|
Length = 256 |
| >gnl|CDD|187621 cd05363, SDH_SDR_c, Sorbitol dehydrogenase (SDH), classical (c) SDR | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 5e-13
Identities = 50/154 (32%), Positives = 80/154 (51%), Gaps = 14/154 (9%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
LDGKTA++TGS GIG+ A + GARV +A +LE A A +I + +
Sbjct: 1 LDGKTALITGSARGIGRAFAQAYVREGARVAIADINLEAARATAAEIGPAACAI------ 54
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM-MCP-RQLTEDGYELQFATNHLG 131
LD++ S+ +C ++D +I +L+NNA + + P +T + Y+ FA N G
Sbjct: 55 ---SLDVTDQASIDRCVAALVDRWGSIDILVNNAALFDLAPIVDITRESYDRLFAINVSG 111
Query: 132 HYLFTLLLLPR--IIKSAPARIINLSSLAHTWGD 163
LF + + R I + +IIN++S A G+
Sbjct: 112 -TLFMMQAVARAMIAQGRGGKIINMASQAGRRGE 144
|
This bacterial subgroup includes Rhodobacter sphaeroides SDH, and other SDHs. SDH preferentially interconverts D-sorbitol (D-glucitol) and D-fructose, but also interconverts L-iditol/L-sorbose and galactitol/D-tagatose. SDH is NAD-dependent and is a dimeric member of the SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 254 |
| >gnl|CDD|236372 PRK09072, PRK09072, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 5e-13
Identities = 40/146 (27%), Positives = 59/146 (40%), Gaps = 10/146 (6%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L K ++TG++ GIG+ A LA GAR+++ R+ EK E A + G
Sbjct: 2 DLKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPYP-------GR 54
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNHL 130
DL+S + I++LINNAGV + E A N
Sbjct: 55 HRWVVADLTSEAGREAVLARAREMG-GINVLINNAGVNHFALLEDQDPEAIERLLALNLT 113
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSS 156
T LLP + A ++N+ S
Sbjct: 114 APMQLTRALLPLLRAQPSAMVVNVGS 139
|
Length = 263 |
| >gnl|CDD|212493 cd08932, HetN_like_SDR_c, HetN oxidoreductase-like, classical (c) SDR | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 6e-13
Identities = 45/188 (23%), Positives = 68/188 (36%), Gaps = 32/188 (17%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
K A+VTG++ GIG A LA+ G RV + R+ E S G+V
Sbjct: 1 KVALVTGASRGIGIEIARALARDGYRVSLGLRNPEDLA------ALSASG----GDVEAV 50
Query: 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGY-----ELQFATNHLG 131
D + R + D I +L++NAG+ R T E F+ N +
Sbjct: 51 PYDARDPEDARALVDALRDRFGRIDVLVHNAGIG---RPTTLREGSDAELEAHFSINVIA 107
Query: 132 HYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANI 191
T LLP + ++ R++ L+SL+ Y SK A
Sbjct: 108 PAELTRALLPALREAGSGRVVFLNSLSGKRVLAGN--------------AGYSASKFALR 153
Query: 192 LFTTELAK 199
L +
Sbjct: 154 ALAHALRQ 161
|
This subgroup includes Anabaena sp. strain PCC 7120 HetN, a putative oxidoreductase involved in heterocyst differentiation, and related proteins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 223 |
| >gnl|CDD|235725 PRK06179, PRK06179, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 9e-13
Identities = 44/143 (30%), Positives = 66/143 (46%), Gaps = 18/143 (12%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
K A+VTG+++GIG+ TA +LA+ G RV R+ +A V +
Sbjct: 5 KVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAPIPG--------------VELL 50
Query: 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMM---CPRQLTEDGYELQFATNHLGHY 133
+LD++ SV+ E++ I +L+NNAGV + L F TN G
Sbjct: 51 ELDVTDDASVQAAVDEVIARAGRIDVLVNNAGVGLAGAAEESSIAQAQAL-FDTNVFGIL 109
Query: 134 LFTLLLLPRIIKSAPARIINLSS 156
T +LP + RIIN+SS
Sbjct: 110 RMTRAVLPHMRAQGSGRIINISS 132
|
Length = 270 |
| >gnl|CDD|187612 cd05354, SDR_c7, classical (c) SDR, subgroup 7 | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 9e-13
Identities = 50/186 (26%), Positives = 74/186 (39%), Gaps = 31/186 (16%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVV 74
KT +VTG+N GIGK L GA +V A R A K +VV
Sbjct: 3 DKTVLVTGANRGIGKAFVESLLAHGAKKVYAAVRDPGSAAHLVA---------KYGDKVV 53
Query: 75 IRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTE---DGYELQFATNHLG 131
+LD++ +S++ A + D + ++INNAGV+ L E + + + N G
Sbjct: 54 PLRLDVTDPESIKAAAAQAKD----VDVVINNAGVLKPATLLEEGALEALKQEMDVNVFG 109
Query: 132 HYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANI 191
P + + I+NL+S+A K + A G Y SK A
Sbjct: 110 LLRLAQAFAPVLKANGGGAIVNLNSVASL--------------KNFPAMGTYSASKSAAY 155
Query: 192 LFTTEL 197
T L
Sbjct: 156 SLTQGL 161
|
These proteins are members of the classical SDR family, with a canonical active site triad (and also an active site Asn) and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 235 |
| >gnl|CDD|226476 COG3967, DltE, Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 1e-12
Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 18/150 (12%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG- 71
+ G T ++TG +GIG A + G VI+ R+ E+ L + K
Sbjct: 2 KTTGNTILITGGASGIGLALAKRFLELGNTVIICGRNEER-----------LAEAKAENP 50
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM-----MCPRQLTEDGYELQFA 126
E+ D++ S R+ + + +++LINNAG+ L +D E + A
Sbjct: 51 EIHTEVCDVADRDSRRELVEWLKKEYPNLNVLINNAGIQRNEDLTGAEDLLDDA-EQEIA 109
Query: 127 TNHLGHYLFTLLLLPRIIKSAPARIINLSS 156
TN L T LLLP +++ A IIN+SS
Sbjct: 110 TNLLAPIRLTALLLPHLLRQPEATIINVSS 139
|
Length = 245 |
| >gnl|CDD|211705 TIGR01963, PHB_DH, 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 1e-12
Identities = 41/146 (28%), Positives = 64/146 (43%), Gaps = 9/146 (6%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVI 75
GKTA+VTG+ +GIG A LA GA V++ E AE AA + G V+
Sbjct: 1 GKTALVTGAASGIGLAIARALAAAGANVVVNDFGEEGAEAAAKVAGDA------GGSVIY 54
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-MMCP-RQLTEDGYELQFATNHLGHY 133
D++ + + +L+NNAG+ + P + + ++ A +
Sbjct: 55 LPADVTKEDEIADMIAAAAAEFGGLDILVNNAGIQHVAPIEEFPPEDWDRIIAVMLTSAF 114
Query: 134 LFTLLLLPRIIKSAPARIINLSSLAH 159
LP + K RIIN++S AH
Sbjct: 115 HTIRAALPHMKKQGWGRIINIAS-AH 139
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. Length = 255 |
| >gnl|CDD|187587 cd05326, secoisolariciresinol-DH_like_SDR_c, secoisolariciresinol dehydrogenase (secoisolariciresinol-DH)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 1e-12
Identities = 56/203 (27%), Positives = 83/203 (40%), Gaps = 46/203 (22%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RLDGK AI+TG +GIG+ TA AK GARV++A DI DAG+
Sbjct: 1 RLDGKVAIITGGASGIGEATARLFAKHGARVVIA------------DID------DDAGQ 42
Query: 73 VVIRQL----------DLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCP----RQLTE 118
V +L D++ VR + + ++ NNAGV+ P + +
Sbjct: 43 AVAAELGDPDISFVHCDVTVEADVRAAVDTAVARFGRLDIMFNNAGVLGAPCYSILETSL 102
Query: 119 DGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYS 178
+ +E N G +L T +I + I++++S+A G H
Sbjct: 103 EEFERVLDVNVYGAFLGTKHAARVMIPAKKGSIVSVASVAGVVGGLGPH----------- 151
Query: 179 ATGAYGRSKLANILFTTELAKRL 201
AY SK A + T A L
Sbjct: 152 ---AYTASKHAVLGLTRSAATEL 171
|
Podophyllum secoisolariciresinol-DH is a homo tetrameric, classical SDR that catalyzes the NAD-dependent conversion of (-)-secoisolariciresinol to (-)-matairesinol via a (-)-lactol intermediate. (-)-Matairesinol is an intermediate to various 8'-lignans, including the cancer-preventive mammalian lignan, and those involved in vascular plant defense. This subgroup also includes rice momilactone A synthase which catalyzes the conversion of 3beta-hydroxy-9betaH-pimara-7,15-dien-19,6beta-olide into momilactone A, Arabidopsis ABA2 which during abscisic acid (ABA) biosynthesis, catalyzes the conversion of xanthoxin to abscisic aldehyde and, maize Tasselseed2 which participate in the maize sex determination pathway. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 249 |
| >gnl|CDD|183718 PRK12746, PRK12746, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 2e-12
Identities = 60/197 (30%), Positives = 93/197 (47%), Gaps = 31/197 (15%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
LDGK A+VTG++ GIG+ A LA GA V + + + AAD+ ++ + G+
Sbjct: 4 LDGKVALVTGASRGIGRAIAMRLANDGALVAI---HYGRNKQAADETIREIE--SNGGKA 58
Query: 74 VIRQLDLSSLKSVRKCAQEILDNE-------SAIHLLINNAGV--MMCPRQLTEDGYELQ 124
+ + DL+S+ V+K ++ L NE S I +L+NNAG+ TE+ ++
Sbjct: 59 FLIEADLNSIDGVKKLVEQ-LKNELQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEI 117
Query: 125 FATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYG 184
A N + LP + A R+IN+SS + G++ + AYG
Sbjct: 118 MAVNIKAPFFLIQQTLPLL--RAEGRVINISS--------------AEVRLGFTGSIAYG 161
Query: 185 RSKLANILFTTELAKRL 201
SK A T LAK L
Sbjct: 162 LSKGALNTMTLPLAKHL 178
|
Length = 254 |
| >gnl|CDD|187615 cd05357, PR_SDR_c, pteridine reductase (PR), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-12
Identities = 47/198 (23%), Positives = 73/198 (36%), Gaps = 33/198 (16%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
A+VTG+ IG+ A LA G RV++ ++E A ++ L V+
Sbjct: 1 AVALVTGAAKRIGRAIAEALAAEGYRVVVHYN---RSEAEAQRLKDELN--ALRNSAVLV 55
Query: 77 QLDLSSLKSVRKCAQEILDNESA----IHLLINNAGVMMC--PRQLTEDGYELQFATNHL 130
Q DLS + +++ +L+NNA Q +ED + F N
Sbjct: 56 QADLSDFAAC----ADLVAAAFRAFGRCDVLVNNASAFYPTPLGQGSEDAWAELFGINLK 111
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK--L 188
YL R+ S IIN+ D ++ + AY SK L
Sbjct: 112 APYLLIQAFARRLAGSRNGSIINII--------------DAMTDRPLTGYFAYCMSKAAL 157
Query: 189 ANI--LFTTELAKRLQVN 204
+ ELA ++VN
Sbjct: 158 EGLTRSAALELAPNIRVN 175
|
Pteridine reductases (PRs), members of the SDR family, catalyzes the NAD-dependent reduction of folic acid, dihydrofolate and related compounds. In Leishmania, pteridine reductase (PTR1) acts to circumvent the anti-protozoan drugs that attack dihydrofolate reductase activity. Proteins in this subgroup have an N-terminal NAD-binding motif and a YxxxK active site motif, but have an Asp instead of the usual upstream catalytic Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 234 |
| >gnl|CDD|187625 cd05367, SPR-like_SDR_c, sepiapterin reductase (SPR)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-12
Identities = 50/184 (27%), Positives = 76/184 (41%), Gaps = 30/184 (16%)
Query: 18 TAIVTGSNTGIGKCTANELAKRG--ARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVI 75
I+TG++ GIG+ A EL KRG + V++ RS E + +++R L+ V
Sbjct: 1 VIILTGASRGIGRALAEELLKRGSPSVVVLLARSEEPLQELKEELRPGLR-------VTT 53
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM--MCPRQLTEDGYELQ--FATNHLG 131
+ DLS V + + I + LLINNAG + + + + ELQ F N
Sbjct: 54 VKADLSDAAGVEQLLEAIRKLDGERDLLINNAGSLGPVSKIEFIDLD-ELQKYFDLNLTS 112
Query: 132 HYLFTLLLLPRIIK-SAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA- 189
T LL K ++N+SS A + G Y SK A
Sbjct: 113 PVCLTSTLLRAFKKRGLKKTVVNVSSGAAV--------------NPFKGWGLYCSSKAAR 158
Query: 190 NILF 193
++ F
Sbjct: 159 DMFF 162
|
Human SPR, a member of the SDR family, catalyzes the NADP-dependent reduction of sepiaptern to 7,8-dihydrobiopterin (BH2). In addition to SPRs, this subgroup also contains Bacillus cereus yueD, a benzil reductase, which catalyzes the stereospecific reduction of benzil to (S)-benzoin. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 241 |
| >gnl|CDD|187622 cd05364, SDR_c11, classical (c) SDR, subgroup 11 | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 2e-12
Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 6/147 (4%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L GK AI+TGS++GIG TA A+ GAR+ + R E+ E L+ ++
Sbjct: 1 LSGKVAIITGSSSGIGAGTAILFARLGARLALTGRDAERLEETRQSC---LQAGVSEKKI 57
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTED--GYELQFATNHLG 131
++ DL+ + + L + +L+NNAG++ +D Y+ N
Sbjct: 58 LLVVADLTEEEGQDRIISTTLAKFGRLDILVNNAGILAKGGGEDQDIEEYDKVMNLNLRA 117
Query: 132 HYLFTLLLLPRIIKSAPARIINLSSLA 158
T L +P +IK+ I+N+SS+A
Sbjct: 118 VIYLTKLAVPHLIKTKGE-IVNVSSVA 143
|
SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 253 |
| >gnl|CDD|236241 PRK08324, PRK08324, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 3e-12
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 9/123 (7%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L GK A+VTG+ GIGK TA LA GA V++A E AE AA ++
Sbjct: 420 LAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAEL-------GGPDRA 472
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNHLG 131
+ D++ +V+ +E + ++++NAG+ + + +++ + F N G
Sbjct: 473 LGVACDVTDEAAVQAAFEEAALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATG 532
Query: 132 HYL 134
H+L
Sbjct: 533 HFL 535
|
Length = 681 |
| >gnl|CDD|187640 cd08935, mannonate_red_SDR_c, putative D-mannonate oxidoreductase, classical (c) SDR | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 6e-12
Identities = 54/209 (25%), Positives = 81/209 (38%), Gaps = 52/209 (24%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L K A++TG +G A LA+ GA+V R+ EK + A K++ G
Sbjct: 3 LKNKVAVITGGTGVLGGAMARALAQAGAKVAALGRNQEKGDKVA-------KEITALGGR 55
Query: 74 VIR----QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--------------- 114
I LD +SL+ R +EI+ + +LIN AG P
Sbjct: 56 AIALAADVLDRASLERAR---EEIVAQFGTVDILINGAGGNH-PDATTDPEHYEPETEQN 111
Query: 115 --QLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDIN 172
L E+G+E F N G +L + + +++ IIN+SS+
Sbjct: 112 FFDLDEEGWEFVFDLNLNGSFLPSQVFGKDMLEQKGGSIINISSMN-------------- 157
Query: 173 LEKGYSATG---AYGRSKLANILFTTELA 198
+S AY +K A FT LA
Sbjct: 158 ---AFSPLTKVPAYSAAKAAVSNFTQWLA 183
|
D-mannonate oxidoreductase catalyzes the NAD-dependent interconversion of D-mannonate and D-fructuronate. This subgroup includes Bacillus subtitils UxuB/YjmF, a putative D-mannonate oxidoreductase; the B. subtilis UxuB gene is part of a putative ten-gene operon (the Yjm operon) involved in hexuronate catabolism. Escherichia coli UxuB does not belong to this subgroup. This subgroup has a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 271 |
| >gnl|CDD|181585 PRK08936, PRK08936, glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 7e-12
Identities = 38/147 (25%), Positives = 71/147 (48%), Gaps = 10/147 (6%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEK-AETAADDIRTSLKDVKDAGE 72
L+GK ++TG +TG+G+ A K A+V++ RS E+ A A++I+ K GE
Sbjct: 5 LEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIK------KAGGE 58
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMM--CPRQLTEDGYELQFATNHL 130
+ + D++ V Q + + ++INNAG+ +++ + + TN
Sbjct: 59 AIAVKGDVTVESDVVNLIQTAVKEFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLT 118
Query: 131 GHYLFTLLLLPRIIK-SAPARIINLSS 156
G +L + + ++ IIN+SS
Sbjct: 119 GAFLGSREAIKYFVEHDIKGNIINMSS 145
|
Length = 261 |
| >gnl|CDD|237188 PRK12745, PRK12745, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 1e-11
Identities = 35/151 (23%), Positives = 60/151 (39%), Gaps = 17/151 (11%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG-EVVI 75
A+VTG GIG A LA G + + +++ + ++++ G EV+
Sbjct: 3 PVALVTGGRRGIGLGIARALAAAGFDLAIN------DRPDDEELAATQQELRALGVEVIF 56
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR----QLTEDGYELQFATNHLG 131
D++ L + I L+NNAGV + R LT + ++ A N G
Sbjct: 57 FPADVADLSAHEAMLDAAQAAWGRIDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRG 116
Query: 132 HYLFT------LLLLPRIIKSAPARIINLSS 156
+ T +L P + I+ +SS
Sbjct: 117 PFFLTQAVAKRMLAQPEPEELPHRSIVFVSS 147
|
Length = 256 |
| >gnl|CDD|187596 cd05337, BKR_1_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 1, classical (c) SDR | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 1e-11
Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 17/152 (11%)
Query: 18 TAIVTGSNTGIGKCTANELAKRGARV-IMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
AIVTG++ GIG+ A ELA RG + I ++A ++ +
Sbjct: 3 VAIVTGASRGIGRAIATELAARGFDIAINDLPDDDQATEVVAEVL------AAGRRAIYF 56
Query: 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR----QLTEDGYELQFATNHLGH 132
Q D+ L + ++ + L+NNAG+ + PR LTED ++ A N G
Sbjct: 57 QADIGELSDHEALLDQAWEDFGRLDCLVNNAGIAVRPRGDLLDLTEDSFDRLIAINLRGP 116
Query: 133 YLFTLLLLPRII-----KSAPAR-IINLSSLA 158
+ T + R++ P R II ++S+
Sbjct: 117 FFLTQAVARRMVEQPDRFDGPHRSIIFVTSIN 148
|
This subgroup includes Escherichia coli CFT073 FabG. The Escherichai coli K12 BKR, FabG, belongs to a different subgroup. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 255 |
| >gnl|CDD|180439 PRK06171, PRK06171, sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 1e-11
Identities = 56/200 (28%), Positives = 80/200 (40%), Gaps = 42/200 (21%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L GK IVTG ++GIG EL GA V+ A DI D +
Sbjct: 7 LQGKIIIVTGGSSGIGLAIVKELLANGANVVNA------------DIHGG--DGQHENYQ 52
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR------------QLTEDGY 121
+ D+SS + V EI++ I L+NNAG+ + PR +L E +
Sbjct: 53 FV-PTDVSSAEEVNHTVAEIIEKFGRIDGLVNNAGINI-PRLLVDEKDPAGKYELNEAAF 110
Query: 122 ELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATG 181
+ F N G +L + + +++K I+N+SS A LE G
Sbjct: 111 DKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEA-------------GLE-GSEGQS 156
Query: 182 AYGRSKLANILFTTELAKRL 201
Y +K A FT AK L
Sbjct: 157 CYAATKAALNSFTRSWAKEL 176
|
Length = 266 |
| >gnl|CDD|169390 PRK08340, PRK08340, glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 1e-11
Identities = 50/142 (35%), Positives = 75/142 (52%), Gaps = 12/142 (8%)
Query: 20 IVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLD 79
+VT S+ GIG A EL K+GARV+++ R+ E ++ +LK++K+ GEV + D
Sbjct: 4 LVTASSRGIGFNVARELLKKGARVVISSRNEE-------NLEKALKELKEYGEVYAVKAD 56
Query: 80 LSSLKSVRKCAQEILDNESAIHLLINNAGVMMC-PRQLTEDGYE--LQFATNHL--GHYL 134
LS ++ +E + I L+ NAG + C P L E GY L+ A HL YL
Sbjct: 57 LSDKDDLKNLVKEAWELLGGIDALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYL 116
Query: 135 FTLLLLPRIIKSAPARIINLSS 156
TLL+ + K ++ LSS
Sbjct: 117 TTLLIQAWLEKKMKGVLVYLSS 138
|
Length = 259 |
| >gnl|CDD|181077 PRK07677, PRK07677, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 1e-11
Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 8/108 (7%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVI 75
K I+TG ++G+GK A A+ GA V++ R+ EK E A +I G+V+
Sbjct: 1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQ------FPGQVLT 54
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINN-AGVMMCP-RQLTEDGY 121
Q+D+ + + V+K ++I + I LINN AG +CP L+ +G+
Sbjct: 55 VQMDVRNPEDVQKMVEQIDEKFGRIDALINNAAGNFICPAEDLSVNGW 102
|
Length = 252 |
| >gnl|CDD|135765 PRK06113, PRK06113, 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-11
Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 7/147 (4%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RLDGK AI+TG+ GIGK A A GA V+++ + + A D+I+ G+
Sbjct: 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL------GGQ 61
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMC-PRQLTEDGYELQFATNHLG 131
+ D++S + + A L + +L+NNAG P + + + N
Sbjct: 62 AFACRCDITSEQELSALADFALSKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFS 121
Query: 132 HYLFTLLLLPRIIKSAPARIINLSSLA 158
+ + L+ P + K+ I+ ++S+A
Sbjct: 122 FFHLSQLVAPEMEKNGGGVILTITSMA 148
|
Length = 255 |
| >gnl|CDD|187613 cd05355, SDR_c1, classical (c) SDR, subgroup 1 | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 2e-11
Identities = 55/194 (28%), Positives = 90/194 (46%), Gaps = 27/194 (13%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG- 71
+L GK A++TG ++GIG+ A A+ GA V + E+ DD + K +++ G
Sbjct: 23 KLKGKKALITGGDSGIGRAVAIAFAREGADVAINYLPEEE-----DDAEETKKLIEEEGR 77
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQ----LTEDGYELQFAT 127
+ ++ DL R +E++ + +L+NNA P++ +T + E F T
Sbjct: 78 KCLLIPGDLGDESFCRDLVKEVVKEFGKLDILVNNAAYQH-PQESIEDITTEQLEKTFRT 136
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
N + T LP + K + IIN +S+ T GS H D Y+AT K
Sbjct: 137 NIFSMFYLTKAALPHLKKG--SSIINTTSV--TAYKGSPHLLD------YAAT------K 180
Query: 188 LANILFTTELAKRL 201
A + FT L+ +L
Sbjct: 181 GAIVAFTRGLSLQL 194
|
These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 270 |
| >gnl|CDD|187614 cd05356, 17beta-HSD1_like_SDR_c, 17-beta-hydroxysteroid dehydrogenases (17beta-HSDs) types -1, -3, and -12, -like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 2e-11
Identities = 49/149 (32%), Positives = 70/149 (46%), Gaps = 14/149 (9%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVI 75
G A+VTG+ GIGK A ELAKRG VI+ R+ EK + A +I K E
Sbjct: 1 GTWAVVTGATDGIGKAYAEELAKRGFNVILISRTQEKLDAVAKEIEE-----KYGVETKT 55
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMC---PRQLTE-DGYELQ--FATNH 129
D S+ + + ++ L+ I +L+NN G + P E ELQ N
Sbjct: 56 IAADFSAGDDIYERIEKELEGLD-IGILVNNVG--ISHSIPEYFLETPEDELQDIINVNV 112
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLA 158
+ T L+LP ++K I+N+SS A
Sbjct: 113 MATLKMTRLILPGMVKRKKGAIVNISSFA 141
|
This subgroup includes various 17-beta-hydroxysteroid dehydrogenases and 3-ketoacyl-CoA reductase, these are members of the SDR family, and contain the canonical active site tetrad and glycine-rich NAD-binding motif of the classical SDRs. 3-ketoacyl-CoA reductase (KAR, aka 17beta-HSD type 12, encoded by HSD17B12) acts in fatty acid elongation; 17beta- hydroxysteroid dehydrogenases are isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the SDR family. 17beta-estradiol dehydrogenase (aka 17beta-HSD type 1, encoded by HSD17B1) converts estrone to estradiol. Estradiol is the predominant female sex hormone. 17beta-HSD type 3 (aka testosterone 17-beta-dehydrogenase 3, encoded by HSD17B3) catalyses the reduction of androstenedione to testosterone, it also accepts estrogens as substrates. This subgroup also contains a putative steroid dehydrogenase let-767 from Caenorhabditis elegans, mutation in which results in hypersensitivity to cholesterol limitation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 239 |
| >gnl|CDD|180458 PRK06194, PRK06194, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 2e-11
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
GK A++TG+ +G G A A G ++++A + + A ++R G
Sbjct: 2 KDFAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELR-------AQG 54
Query: 72 -EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV 109
EV+ + D+S V A L+ A+HLL NNAGV
Sbjct: 55 AEVLGVRTDVSDAAQVEALADAALERFGAVHLLFNNAGV 93
|
Length = 287 |
| >gnl|CDD|235703 PRK06125, PRK06125, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 3e-11
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Query: 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDA 70
D L GK ++TG++ GIG A A G + + R + E A D+R + V
Sbjct: 2 DLHLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLR-AAHGVD-- 58
Query: 71 GEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAG 108
V + LDLSS ++ + A E D I +L+NNAG
Sbjct: 59 --VAVHALDLSSPEAREQLAAEAGD----IDILVNNAG 90
|
Length = 259 |
| >gnl|CDD|235628 PRK05855, PRK05855, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 3e-11
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
GK +VTG+ +GIG+ TA A+ GA V+ + AE A+ IR +
Sbjct: 312 PFSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAA------GAV 365
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMM 111
++D+S ++ A+ + +++NNAG+ M
Sbjct: 366 AHAYRVDVSDADAMEAFAEWVRAEHGVPDIVVNNAGIGM 404
|
Length = 582 |
| >gnl|CDD|183773 PRK12824, PRK12824, acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 3e-11
Identities = 49/185 (26%), Positives = 77/185 (41%), Gaps = 23/185 (12%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
K A+VTG+ GIG A EL G RVI S + +D +V ++
Sbjct: 3 KIALVTGAKRGIGSAIARELLNDGYRVIATYFSGNDCAKDWFEEYGFTED-----QVRLK 57
Query: 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM---MCPRQLTEDGYELQFATNHLGHY 133
+LD++ + + EI + E + +L+NNAG+ + R ++ ++ TN +
Sbjct: 58 ELDVTDTEECAEALAEIEEEEGPVDILVNNAGITRDSVFKRMSHQEWNDV-INTNLNSVF 116
Query: 134 LFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILF 193
T L + + RIIN+SS +N KG Y +K I F
Sbjct: 117 NVTQPLFAAMCEQGYGRIINISS--------------VNGLKGQFGQTNYSAAKAGMIGF 162
Query: 194 TTELA 198
T LA
Sbjct: 163 TKALA 167
|
Length = 245 |
| >gnl|CDD|187600 cd05341, 3beta-17beta-HSD_like_SDR_c, 3beta17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 4e-11
Identities = 47/184 (25%), Positives = 75/184 (40%), Gaps = 25/184 (13%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RL GK AIVTG G+G A L GA+V+++ E+ + AA ++ + +
Sbjct: 2 RLKGKVAIVTGGARGLGLAHARLLVAEGAKVVLSDILDEEGQAAAAELGDAARFF----- 56
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQ--FATNHL 130
LD++ + + +L+NNAG++ T E + N
Sbjct: 57 ----HLDVTDEDGWTAVVDTAREAFGRLDVLVNNAGILTGGTVETTTLEEWRRLLDINLT 112
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
G +L T ++P + ++ IIN+SS+ GD A AY SK A
Sbjct: 113 GVFLGTRAVIPPMKEAGGGSIINMSSIEGLVGD--------------PALAAYNASKGAV 158
Query: 191 ILFT 194
T
Sbjct: 159 RGLT 162
|
This subgroup includes members identified as 3beta17beta hydroxysteroid dehydrogenase, 20beta hydroxysteroid dehydrogenase, and R-alcohol dehydrogenase. These proteins exhibit the canonical active site tetrad and glycine rich NAD(P)-binding motif of the classical SDRs. 17beta-dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 247 |
| >gnl|CDD|187634 cd08929, SDR_c4, classical (c) SDR, subgroup 4 | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 4e-11
Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 19/148 (12%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLK----DVKDAGE 72
K A+VTG++ GIG+ TA L G RV + R + AA + DV+D +
Sbjct: 1 KAALVTGASRGIGEATARLLHAEGYRVGICARDEARLAAAAAQELEGVLGLAGDVRDEAD 60
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-MMCP-RQLTEDGYELQFATNHL 130
VR+ + + + L+NNAGV +M P +LT + + L TN
Sbjct: 61 -------------VRRAVDAMEEAFGGLDALVNNAGVGVMKPVEELTPEEWRLVLDTNLT 107
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLA 158
G + P +++ I+N+ SLA
Sbjct: 108 GAFYCIHKAAPALLRRGGGTIVNVGSLA 135
|
This subgroup has a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 226 |
| >gnl|CDD|168574 PRK06484, PRK06484, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 5e-11
Identities = 48/191 (25%), Positives = 77/191 (40%), Gaps = 28/191 (14%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVI 75
+ +VTG+ GIG+ A+ G +V++A R++E+A AD + +
Sbjct: 5 SRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSLGP---------DHHA 55
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV----MMCPRQLTEDGYELQFATNHLG 131
+D+S +R+ +++ I +L+NNAGV M T + + A N G
Sbjct: 56 LAMDVSDEAQIREGFEQLHREFGRIDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTG 115
Query: 132 HYLFTLLLLPRIIKSAP-ARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
YL L +I+ A I+N++S A AY SK A
Sbjct: 116 AYLVAREALRLMIEQGHGAAIVNVASGAGL--------------VALPKRTAYSASKAAV 161
Query: 191 ILFTTELAKRL 201
I T LA
Sbjct: 162 ISLTRSLACEW 172
|
Length = 520 |
| >gnl|CDD|181295 PRK08213, PRK08213, gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 6e-11
Identities = 58/193 (30%), Positives = 88/193 (45%), Gaps = 27/193 (13%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG- 71
L GKTA+VTG + G+G A L + GARV+++ R E+ E AA + + G
Sbjct: 9 DLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHL-------EALGI 61
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMM-CPRQLTED----GYELQFA 126
+ + D++ + + A+E L+ + +L+NNAG P ED ++
Sbjct: 62 DALWIAADVADEADIERLAEETLERFGHVDILVNNAGATWGAP---AEDHPVEAWDKVMN 118
Query: 127 TNHLGHYLFTLLLLPR-IIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGR 185
N G +L + + R +I RIIN++S+A G G T AY
Sbjct: 119 LNVRGLFLLSQAVAKRSMIPRGYGRIINVASVA---GLGGNP-------PEVMDTIAYNT 168
Query: 186 SKLANILFTTELA 198
SK A I FT LA
Sbjct: 169 SKGAVINFTRALA 181
|
Length = 259 |
| >gnl|CDD|180604 PRK06523, PRK06523, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 7e-11
Identities = 47/197 (23%), Positives = 79/197 (40%), Gaps = 32/197 (16%)
Query: 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVK 68
+ L GK A+VTG GIG T L + GARV+ RS DD+
Sbjct: 2 SFFLELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARS------RPDDL-------- 47
Query: 69 DAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCP----RQLTEDGYELQ 124
V DL++ + A+ +L+ + +L++ G P LT++ ++ +
Sbjct: 48 -PEGVEFVAADLTTAEGCAAVARAVLERLGGVDILVHVLGGSSAPAGGFAALTDEEWQDE 106
Query: 125 FATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYG 184
N L LLP +I II+++S+ + L +T AY
Sbjct: 107 LNLNLLAAVRLDRALLPGMIARGSGVIIHVTSIQRR----------LPL---PESTTAYA 153
Query: 185 RSKLANILFTTELAKRL 201
+K A ++ L+K +
Sbjct: 154 AAKAALSTYSKSLSKEV 170
|
Length = 260 |
| >gnl|CDD|181225 PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 8e-11
Identities = 53/200 (26%), Positives = 81/200 (40%), Gaps = 31/200 (15%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L GK ++TGS GIG A LA+ GA +I+ + E+AE A +R A
Sbjct: 7 LAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAP-- 64
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM----MCPRQLTEDGYELQFATNH 129
+++ + V + I + I +LINNAG+ + E + A N
Sbjct: 65 ----FNVTHKQEVEAAIEHIEKDIGPIDVLINNAGIQRRHPFT--EFPEQEWNDVIAVNQ 118
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
+L + + ++K +IIN+ SM E G Y SK A
Sbjct: 119 TAVFLVSQAVARYMVKRQAGKIINI---------CSMQS-----ELGRDTITPYAASKGA 164
Query: 190 NILFT----TELAK-RLQVN 204
+ T ELA+ +QVN
Sbjct: 165 VKMLTRGMCVELARHNIQVN 184
|
Length = 254 |
| >gnl|CDD|183778 PRK12829, PRK12829, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 9e-11
Identities = 52/193 (26%), Positives = 75/193 (38%), Gaps = 28/193 (14%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
LDG +VTG +GIG+ A A+ GARV + S E A L K V
Sbjct: 9 LDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVS----EAALAATAARLPGAKVTATV 64
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCP----RQLTEDGYELQFATNH 129
D++ V + ++ + +L+NNAG+ P ++T + +E A N
Sbjct: 65 A----DVADPAQVERVFDTAVERFGGLDVLVNNAGIAG-PTGGIDEITPEQWEQTLAVNL 119
Query: 130 LGHYLFTLLLLPRIIKSAPAR-IINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
G + F +P + S II LSS+A GY Y SK
Sbjct: 120 NGQFYFARAAVPLLKASGHGGVIIALSSVAG--------------RLGYPGRTPYAASKW 165
Query: 189 ANILFTTELAKRL 201
A + LA L
Sbjct: 166 AVVGLVKSLAIEL 178
|
Length = 264 |
| >gnl|CDD|181139 PRK07832, PRK07832, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 1e-10
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 16/149 (10%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVI- 75
K VTG+ +GIG+ TA LA +GA + + R AD + ++ D + G V
Sbjct: 1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRD-------ADGLAQTVADARALGGTVPE 53
Query: 76 -RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMM--CPRQLTEDGYELQFATNHLG- 131
R LD+S +V A +I ++ +++N AG+ +LT + + N +G
Sbjct: 54 HRALDISDYDAVAAFAADIHAAHGSMDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGP 113
Query: 132 -HYLFTLLLLPRIIKSAPAR-IINLSSLA 158
H + T +P ++ + ++N+SS A
Sbjct: 114 IHVIET--FVPPMVAAGRGGHLVNVSSAA 140
|
Length = 272 |
| >gnl|CDD|180462 PRK06198, PRK06198, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 1e-10
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMAC-RSLEKAETAADDIRTSLKDVKDA 70
RLDGK A+VTG G+G A A+RGA ++ C R+ EK E A ++
Sbjct: 2 GRLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEAL------G 55
Query: 71 GEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV 109
+ V Q DLS ++ R+ + + L+N AG+
Sbjct: 56 AKAVFVQADLSDVEDCRRVVAAADEAFGRLDALVNAAGL 94
|
Length = 260 |
| >gnl|CDD|180993 PRK07478, PRK07478, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 1e-10
Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 30/194 (15%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
RL+GK AI+TG+++GIG+ A A+ GA+V++ R + + +IR + G
Sbjct: 2 MRLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRA------EGG 55
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM--MCP-RQLTEDGYELQFATN 128
E V D+ + ++ + + NNAG + M P +++ +G+ ATN
Sbjct: 56 EAVALAGDVRDEAYAKALVALAVERFGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATN 115
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSA----TGAYG 184
+L +P ++ +I S+ G++A AY
Sbjct: 116 LTSAFLGAKHQIPAMLARGGGSLIFTSTFV-----------------GHTAGFPGMAAYA 158
Query: 185 RSKLANILFTTELA 198
SK I T LA
Sbjct: 159 ASKAGLIGLTQVLA 172
|
Length = 254 |
| >gnl|CDD|187601 cd05343, Mgc4172-like_SDR_c, human Mgc4172-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 1e-10
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
R G+ A+VTG++ GIG A L + G +V+ R ++K E A + ++
Sbjct: 3 RWRGRVALVTGASVGIGAAVARALVQHGMKVVGCARRVDKIEALAAECQS-----AGYPT 57
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV 109
+ Q DLS+ + + I + + INNAG+
Sbjct: 58 LFPYQCDLSNEEQILSMFSAIRTQHQGVDVCINNAGL 94
|
Human Mgc4172-like proteins, putative SDRs. These proteins are members of the SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|187629 cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydrogenase type 10 (HSD10)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 2e-10
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 10/94 (10%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVI 75
G A+VTG +G+G T L +GA+V++ ET A K
Sbjct: 2 GLVAVVTGGASGLGLATVERLLAQGAKVVILDLPNSPGETVA----------KLGDNCRF 51
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV 109
+D++S K V+ + +++N AG+
Sbjct: 52 VPVDVTSEKDVKAALALAKAKFGRLDIVVNCAGI 85
|
HSD10, also known as amyloid-peptide-binding alcohol dehydrogenase (ABAD), was previously identified as a L-3-hydroxyacyl-CoA dehydrogenase, HADH2. In fatty acid metabolism, HADH2 catalyzes the third step of beta-oxidation, the conversion of a hydroxyl to a keto group in the NAD-dependent oxidation of L-3-hydroxyacyl CoA. In addition to alcohol dehydrogenase and HADH2 activites, HSD10 has steroid dehydrogenase activity. Although the mechanism is unclear, HSD10 is implicated in the formation of amyloid beta-petide in the brain (which is linked to the development of Alzheimer's disease). Although HSD10 is normally concentrated in the mitochondria, in the presence of amyloid beta-peptide it translocates into the plasma membrane, where it's action may generate cytotoxic aldehydes and may lower estrogen levels through its use of 17-beta-estradiol as a substrate. HSD10 is a member of the SRD family, but differs from other SDRs by the presence of two insertions of unknown function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 252 |
| >gnl|CDD|235726 PRK06181, PRK06181, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 2e-10
Identities = 43/146 (29%), Positives = 76/146 (52%), Gaps = 10/146 (6%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVI 75
GK I+TG++ GIG+ A LA+ GA++++A R+ + + A ++ GE ++
Sbjct: 1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADH------GGEALV 54
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDG-YELQFATNHLGH 132
D+S ++ + + + I +L+NNAG+ M R +LT+ +E N+LG
Sbjct: 55 VPTDVSDAEACERLIEAAVARFGGIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGA 114
Query: 133 YLFTLLLLPRIIKSAPARIINLSSLA 158
T LP + S +I+ +SSLA
Sbjct: 115 VYCTHAALPHLKASR-GQIVVVSSLA 139
|
Length = 263 |
| >gnl|CDD|187665 cd09805, type2_17beta_HSD-like_SDR_c, human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 2e-10
Identities = 50/195 (25%), Positives = 83/195 (42%), Gaps = 35/195 (17%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
K ++TG ++G G A +L G V+ C L K A ++R + D +
Sbjct: 1 KAVLITGCDSGFGNLLAKKLDSLGFTVLAGC--LTKNGPGAKELR---RVCSDRLRTL-- 53
Query: 77 QLDLSSLKSVRKCAQEILDNESAIHL--LINNAGVMMCPRQLTEDGYELQFAT------- 127
QLD++ + +++ AQ + ++ L L+NNAG++ D L
Sbjct: 54 QLDVTKPEQIKRAAQWVKEHVGEKGLWGLVNNAGILGFG----GDEELLPMDDYRKCMEV 109
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
N G T LP +++ A R++N+SS+ G + + A GAY SK
Sbjct: 110 NLFGTVEVTKAFLP-LLRRAKGRVVNVSSMG-----GRV---------PFPAGGAYCASK 154
Query: 188 LANILFTTELAKRLQ 202
A F+ L + LQ
Sbjct: 155 AAVEAFSDSLRRELQ 169
|
17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. This classical-SDR subgroup includes the human proteins: type 2 17beta-HSD, type 6 17beta-HSD, type 2 11beta-HSD, dehydrogenase/reductase SDR family member 9, short-chain dehydrogenase/reductase family 9C member 7, 3-hydroxybutyrate dehydrogenase type 1, and retinol dehydrogenase 5. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 281 |
| >gnl|CDD|236209 PRK08265, PRK08265, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 3e-10
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 9/96 (9%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
L GK AIVTG T IG A L GARV + + A + + +
Sbjct: 2 IGLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLGERARFI---- 57
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNA 107
D++ ++ + ++ + +L+N A
Sbjct: 58 -----ATDITDDAAIERAVATVVARFGRVDILVNLA 88
|
Length = 261 |
| >gnl|CDD|187624 cd05366, meso-BDH-like_SDR_c, meso-2,3-butanediol dehydrogenase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 3e-10
Identities = 48/192 (25%), Positives = 82/192 (42%), Gaps = 28/192 (14%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG-EVV 74
K AI+TG+ GIG+ A LA G +++A +LE+A + ++++ +AG V
Sbjct: 2 SKVAIITGAAQGIGRAIAERLAADGFNIVLADLNLEEAAKST------IQEISEAGYNAV 55
Query: 75 IRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQ----LTEDGYELQFATNHL 130
D++ V + ++ + +++NNAG+ P +TE+ + +A N
Sbjct: 56 AVGADVTDKDDVEALIDQAVEKFGSFDVMVNNAGI--APITPLLTITEEDLKKVYAVNVF 113
Query: 131 GHYLFTLLLLPRIIK-SAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
G + K +IIN SS+A +G+ GAY SK A
Sbjct: 114 GVLFGIQAAARQFKKLGHGGKIINASSIAG--------------VQGFPNLGAYSASKFA 159
Query: 190 NILFTTELAKRL 201
T A+ L
Sbjct: 160 VRGLTQTAAQEL 171
|
2,3-butanediol dehydrogenases (BDHs) catalyze the NAD+ dependent conversion of 2,3-butanediol to acetonin; BDHs are classified into types according to their stereospecificity as to substrates and products. Included in this subgroup are Klebsiella pneumonia meso-BDH which catalyzes meso-2,3-butanediol to D(-)-acetonin, and Corynebacterium glutamicum L-BDH which catalyzes lX+)-2,3-butanediol to L(+)-acetonin. This subgroup is comprised of classical SDRs with the characteristic catalytic triad and NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257 |
| >gnl|CDD|181113 PRK07775, PRK07775, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 3e-10
Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 8/144 (5%)
Query: 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVV 74
D + A+V G+++GIG TA ELA G V + R +EK E D IR D GE V
Sbjct: 9 DRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRA------DGGEAV 62
Query: 75 IRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNHLGH 132
LD++ SV+ + + I +L++ AG + +++ + +E Q + +G
Sbjct: 63 AFPLDVTDPDSVKSFVAQAEEALGEIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGA 122
Query: 133 YLFTLLLLPRIIKSAPARIINLSS 156
+LP +I+ +I + S
Sbjct: 123 NRLATAVLPGMIERRRGDLIFVGS 146
|
Length = 274 |
| >gnl|CDD|235702 PRK06124, PRK06124, gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 4e-10
Identities = 38/151 (25%), Positives = 62/151 (41%), Gaps = 16/151 (10%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L G+ A+VTGS G+G A LA GA V++ R+ E A +R G
Sbjct: 9 LAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALR------AAGGAA 62
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR------QLTEDGYELQFAT 127
D++ ++V I + +L+NN G R +L + T
Sbjct: 63 EALAFDIADEEAVAAAFARIDAEHGRLDILVNNVGA----RDRRPLAELDDAAIRALLET 118
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSSLA 158
+ + L + L R+ + RII ++S+A
Sbjct: 119 DLVAPILLSRLAAQRMKRQGYGRIIAITSIA 149
|
Length = 256 |
| >gnl|CDD|131680 TIGR02632, RhaD_aldol-ADH, rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 4e-10
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L + A VTG GIG+ TA LA GA V++A +LE AE A +I AG
Sbjct: 412 LARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEI----NGQFGAGRA 467
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLG 131
V ++D++ ++V+ ++ + +++NNAG+ + T ++L G
Sbjct: 468 VALKMDVTDEQAVKAAFADVALAYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATG 527
Query: 132 HYL 134
++L
Sbjct: 528 YFL 530
|
Length = 676 |
| >gnl|CDD|236040 PRK07523, PRK07523, gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 5e-10
Identities = 42/148 (28%), Positives = 63/148 (42%), Gaps = 12/148 (8%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L G+ A+VTGS+ GIG A LA+ GA VI+ R K AA+ ++
Sbjct: 8 LTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALA-- 65
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTE----DGYELQFATNH 129
D++ +VR I +L+NNAG M R E D +E TN
Sbjct: 66 ----FDVTDHDAVRAAIDAFEAEIGPIDILVNNAG--MQFRTPLEDFPADAFERLLRTNI 119
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSL 157
+ + +I +IIN++S+
Sbjct: 120 SSVFYVGQAVARHMIARGAGKIINIASV 147
|
Length = 255 |
| >gnl|CDD|187642 cd08937, DHB_DH-like_SDR_c, 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase (DHB DH)-like, classical (c) SDR | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 6e-10
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 18/153 (11%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
R +GK +VTG+ GIG+ A LA GARV++ RS E +I +
Sbjct: 1 RFEGKVVVVTGAAQGIGRGVAERLAGEGARVLLVDRS-ELVHEVLAEILAA------GDA 53
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAG--VMMCPRQLTEDGYELQFATNHL 130
+ DL + + + ++ + +LINN G + P + E+ +++ A
Sbjct: 54 AHVHTADLETYAGAQGVVRAAVERFGRVDVLINNVGGTIWAKPYEHYEEE-QIE-AEIR- 110
Query: 131 GHYLFTLL-----LLPRIIKSAPARIINLSSLA 158
LF L +LP +++ I+N+SS+A
Sbjct: 111 -RSLFPTLWCCRAVLPHMLERQQGVIVNVSSIA 142
|
DHB DH (aka 1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase) catalyzes the NAD-dependent conversion of 1,2-dihydroxycyclohexa-3,4-diene carboxylate to a catechol. This subgroup also contains Pseudomonas putida F1 CmtB, 2,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase, the second enzyme in the pathway for catabolism of p-cumate catabolism. This subgroup shares the glycine-rich NAD-binding motif of the classical SDRs and shares the same catalytic triad; however, the upstream Asn implicated in cofactor binding or catalysis in other SDRs is generally substituted by a Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 256 |
| >gnl|CDD|181131 PRK07814, PRK07814, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 6e-10
Identities = 54/207 (26%), Positives = 91/207 (43%), Gaps = 43/207 (20%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG- 71
RLD + A+VTG+ G+G A A+ GA V++A R+ + + A+ IR AG
Sbjct: 7 RLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIR-------AAGR 59
Query: 72 --EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLT-------EDGYE 122
VV DL+ ++ A + ++ + +++NN G M P L D +
Sbjct: 60 RAHVVA--ADLAHPEATAGLAGQAVEAFGRLDIVVNNVGGTM-PNPLLSTSTKDLADAFT 116
Query: 123 LQFATNHLGHYLFTLLLLPRIIK-SAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATG 181
AT H T+ +P +++ S +IN+SS +G++
Sbjct: 117 FNVATAH----ALTVAAVPLMLEHSGGGSVINISSTMGRLAG-----------RGFA--- 158
Query: 182 AYGRSKLANILFT----TELAKRLQVN 204
AYG +K A +T +L R++VN
Sbjct: 159 AYGTAKAALAHYTRLAALDLCPRIRVN 185
|
Length = 263 |
| >gnl|CDD|236190 PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 6e-10
Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 18/150 (12%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
GKT VTG+ GIG A + GA+VI ++A +D
Sbjct: 6 FSGKTVWVTGAAQGIGYAVALAFVEAGAKVI----GFDQAFLTQEDYP-----------F 50
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM-MCP-RQLTEDGYELQFATNHLG 131
LD+S +V + Q +L + +L+N AG++ M L+++ ++ FA N G
Sbjct: 51 ATFVLDVSDAAAVAQVCQRLLAETGPLDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGG 110
Query: 132 HYLFTLLLLPRIIKSAPARIINLSS-LAHT 160
+ ++P+ + I+ + S AH
Sbjct: 111 AFNLFRAVMPQFRRQRSGAIVTVGSNAAHV 140
|
Length = 252 |
| >gnl|CDD|180440 PRK06172, PRK06172, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 7e-10
Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 9/149 (6%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
GK A+VTG GIG+ TA A+ GA+V++A R E IR + GE
Sbjct: 4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREA------GGE 57
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQL---TEDGYELQFATNH 129
+ D++ V+ ++ + + NNAG+ + +L +E ++ N
Sbjct: 58 ALFVACDVTRDAEVKALVEQTIAAYGRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNV 117
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLA 158
G +L +P ++ I+N +S+A
Sbjct: 118 KGVWLCMKYQIPLMLAQGGGAIVNTASVA 146
|
Length = 253 |
| >gnl|CDD|187638 cd08933, RDH_SDR_c, retinal dehydrogenase-like, classical (c) SDR | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 7e-10
Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 11/150 (7%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
R K IVTG + GIG+ + GA+V+ R + ++ + G
Sbjct: 5 LRYADKVVIVTGGSRGIGRGIVRAFVENGAKVVFCARGEAAGQALESELNRA-----GPG 59
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTED----GYELQFAT 127
D++ + ++ ++ I L+NNAG P Q T++ +
Sbjct: 60 SCKFVPCDVTKEEDIKTLISVTVERFGRIDCLVNNAG-WHPPHQTTDETSAQEFRDLLNL 118
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSSL 157
N + ++L + LP + KS IINLSSL
Sbjct: 119 NLISYFLASKYALPHLRKSQ-GNIINLSSL 147
|
These classical SDRs includes members identified as retinol dehydrogenases, which convert retinol to retinal, a property that overlaps with 17betaHSD activity. 17beta-dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the short-chain dehydrogenases/reductase family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 261 |
| >gnl|CDD|187617 cd05359, ChcA_like_SDR_c, 1-cyclohexenylcarbonyl_coenzyme A_reductase (ChcA)_like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 7e-10
Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 9/146 (6%)
Query: 19 AIVTGSNTGIGKCTANELAKRGARVIMACR-SLEKAETAADDIRTSLKDVKDAGEVVIRQ 77
A+VTG + GIGK A LA+RGA V++ R S + A A +I + G+ V+ +
Sbjct: 1 ALVTGGSRGIGKAIALRLAERGADVVINYRKSKDAAAEVAAEIE------ELGGKAVVVR 54
Query: 78 LDLSSLKSVRKCAQEILDNESAIHLLINNA--GVMMCPRQLTEDGYELQFATNHLGHYLF 135
D+S + V + + + + +L++NA G +LT ++ + TN
Sbjct: 55 ADVSQPQDVEEMFAAVKERFGRLDVLVSNAAAGAFRPLSELTPAHWDAKMNTNLKALVHC 114
Query: 136 TLLLLPRIIKSAPARIINLSSLAHTW 161
+ + RI+ +SSL
Sbjct: 115 AQQAAKLMRERGGGRIVAISSLGSIR 140
|
This subgroup contains classical SDR proteins, including members identified as 1-cyclohexenylcarbonyl coenzyme A reductase. ChcA of Streptomyces collinus is implicated in the final reduction step of shikimic acid to ansatrienin. ChcA shows sequence similarity to the SDR family of NAD-binding proteins, but it lacks the conserved Tyr of the characteristic catalytic site. This subgroup also contains the NADH-dependent enoyl-[acyl-carrier-protein(ACP)] reductase FabL from Bacillus subtilis. This enzyme participates in bacterial fatty acid synthesis, in type II fatty-acid synthases and catalyzes the last step in each elongation cycle. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 242 |
| >gnl|CDD|132250 TIGR03206, benzo_BadH, 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 9e-10
Identities = 46/147 (31%), Positives = 63/147 (42%), Gaps = 8/147 (5%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L KTAIVTG GIG T A+ GA+V + + E AE A DIR G
Sbjct: 1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAK------GGNA 54
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-MMCPRQLTEDG-YELQFATNHLG 131
D++ SV + +L+NNAG P TE +E A N G
Sbjct: 55 QAFACDITDRDSVDTAVAAAEQALGPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTG 114
Query: 132 HYLFTLLLLPRIIKSAPARIINLSSLA 158
+LP +++ RI+N++S A
Sbjct: 115 ALHMHHAVLPGMVERGAGRIVNIASDA 141
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. Length = 250 |
| >gnl|CDD|180817 PRK07060, PRK07060, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 9e-10
Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 18/149 (12%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
GK+ +VTG+++GIG+ A LA+RGARV+ A R+ + A + G
Sbjct: 6 DFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGET----------GC 55
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQL--TEDGYELQFATNHL 130
+R LD+ ++R L A L+N AG+ L T +G++ A N
Sbjct: 56 EPLR-LDVGDDAAIR----AALAAAGAFDGLVNCAGIASLESALDMTAEGFDRVMAVNAR 110
Query: 131 GHYLFTLLLLPRIIKSAPA-RIINLSSLA 158
G L + +I + I+N+SS A
Sbjct: 111 GAALVARHVARAMIAAGRGGSIVNVSSQA 139
|
Length = 245 |
| >gnl|CDD|213929 TIGR04316, dhbA_paeA, 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 9e-10
Identities = 47/188 (25%), Positives = 77/188 (40%), Gaps = 30/188 (15%)
Query: 19 AIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQL 78
+VTG+ GIG A LA+ GARV R+ E+ D+R +L
Sbjct: 1 VLVTGAAQGIGYAVARALAEAGARVAAVDRNFEQLLELVADLRR------YGYPFATYKL 54
Query: 79 DLSSLKSVRKCAQEILDNESAIHLLINNAGVM-MCP-RQLTEDGYELQFATNHLGHYLFT 136
D++ +V + Q + I +L+N AG++ + L+++ ++ FA N G +F
Sbjct: 55 DVADSAAVDEVVQRLEREYGPIDVLVNVAGILRLGAIDSLSDEDWQATFAVNTFG--VFN 112
Query: 137 LL--LLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFT 194
+ + PR+ + I+ + S A M AY SK A + T
Sbjct: 113 VSQAVSPRMKRRRSGAIVTVGSNAANVPRMGM--------------AAYAASKAALTMLT 158
Query: 195 T----ELA 198
ELA
Sbjct: 159 KCLGLELA 166
|
Members of this family are 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (EC 1.3.1.28), the third enzyme in the biosynthesis of 2,3-dihydroxybenzoic acid (DHB) from chorismate. The first two enzymes are isochorismate synthase (EC 5.4.4.2) and isochorismatase (EC 3.3.2.1). Synthesis is often followed by adenylation by the enzyme DHBA-AMP ligase (EC 2.7.7.58) to activate (DHB) for a non-ribosomal peptide synthetase. Length = 250 |
| >gnl|CDD|181349 PRK08278, PRK08278, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 1e-09
Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 11/152 (7%)
Query: 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDA 70
L GKT +TG++ GIG A A+ GA +++A ++ E I T+ ++++ A
Sbjct: 1 MMSLSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAA 60
Query: 71 G-EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQL--TED----GYEL 123
G + + D+ V + ++ I + +NNA + L TED ++L
Sbjct: 61 GGQALPLVGDVRDEDQVAAAVAKAVERFGGIDICVNNASAI----NLTGTEDTPMKRFDL 116
Query: 124 QFATNHLGHYLFTLLLLPRIIKSAPARIINLS 155
N G +L + LP + KS I+ LS
Sbjct: 117 MQQINVRGTFLVSQACLPHLKKSENPHILTLS 148
|
Length = 273 |
| >gnl|CDD|236145 PRK08063, PRK08063, enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-09
Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 9/148 (6%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGAR-VIMACRSLEKAETAADDIRTSLKDVKDAG 71
GK A+VTGS+ GIGK A LA+ G + RS + AE A++I
Sbjct: 1 VFSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIE------ALGR 54
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNA--GVMMCPRQLTEDGYELQFATNH 129
+ + + ++ ++ +++ +I + + + +NNA GV+ +L E ++ N
Sbjct: 55 KALAVKANVGDVEKIKEMFAQIDEEFGRLDVFVNNAASGVLRPAMELEESHWDWTMNINA 114
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSL 157
+ K +II+LSSL
Sbjct: 115 KALLFCAQEAAKLMEKVGGGKIISLSSL 142
|
Length = 250 |
| >gnl|CDD|187663 cd09762, HSDL2_SDR_c, human hydroxysteroid dehydrogenase-like protein 2 (HSDL2), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-09
Identities = 47/150 (31%), Positives = 72/150 (48%), Gaps = 13/150 (8%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG-- 71
L GKT +TG++ GIGK A + A+ GA V++A ++ E I T+ ++++ AG
Sbjct: 1 LAGKTLFITGASRGIGKAIALKAARDGANVVIAAKTAEPHPKLPGTIYTAAEEIEAAGGK 60
Query: 72 ----EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDG--YELQF 125
V IR D VR ++ ++ I +L+NNA + L Y+L
Sbjct: 61 ALPCIVDIRDED-----QVRAAVEKAVEKFGGIDILVNNASAISLTGTLDTPMKRYDLMM 115
Query: 126 ATNHLGHYLFTLLLLPRIIKSAPARIINLS 155
N G YL + LP + KS I+NLS
Sbjct: 116 GVNTRGTYLCSKACLPYLKKSKNPHILNLS 145
|
This subgroup includes human HSDL2 and related protens. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. HSDL2 may play a part in fatty acid metabolism, as it is found in peroxisomes. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 243 |
| >gnl|CDD|182531 PRK10538, PRK10538, malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-09
Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 14/146 (9%)
Query: 20 IVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE-VVIRQL 78
+VTG+ G G+C ++G +VI R E+ + LKD + G+ + I QL
Sbjct: 4 LVTGATAGFGECITRRFIQQGHKVIATGRRQERLQE--------LKD--ELGDNLYIAQL 53
Query: 79 DLSSLKSVRKCAQEILDNESAIHLLINNAGVM--MCPRQLTE-DGYELQFATNHLGHYLF 135
D+ + ++ + + I +L+NNAG+ + P + +E TN+ G
Sbjct: 54 DVRNRAAIEEMLASLPAEWRNIDVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYM 113
Query: 136 TLLLLPRIIKSAPARIINLSSLAHTW 161
T +LP +++ IIN+ S A +W
Sbjct: 114 TRAVLPGMVERNHGHIINIGSTAGSW 139
|
Length = 248 |
| >gnl|CDD|187610 cd05352, MDH-like_SDR_c, mannitol dehydrogenase (MDH)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 2e-09
Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 13/109 (11%)
Query: 1 MFLFSGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDI 60
+ LFS L GK AIVTG + GIG A LA+ GA V + S +AE A+++
Sbjct: 1 LDLFS--------LKGKVAIVTGGSRGIGLAIARALAEAGADVAIIYNSAPRAEEKAEEL 52
Query: 61 RTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV 109
K + + D+SS +SV K ++I + I +LI NAG+
Sbjct: 53 AK-----KYGVKTKAYKCDVSSQESVEKTFKQIQKDFGKIDILIANAGI 96
|
NADP-mannitol dehydrogenase catalyzes the conversion of fructose to mannitol, an acyclic 6-carbon sugar. MDH is a tetrameric member of the SDR family. This subgroup also includes various other tetrameric SDRs, including Pichia stipitis D-arabinitol dehydrogenase (aka polyol dehydrogenase), Candida albicans Sou1p, a sorbose reductase, and Candida parapsilosis (S)-specific carbonyl reductase (SCR, aka S-specific alcohol dehydrogenase) which catalyzes the enantioselective reduction of 2-hydroxyacetophenone into (S)-1-phenyl-1,2-ethanediol. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Length = 252 |
| >gnl|CDD|181297 PRK08217, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 3e-09
Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L K ++TG G+G+ A LA++GA++ + + EK E A + E
Sbjct: 2 DLKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECG------ALGTE 55
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM 110
V +++ + V +I ++ ++ LINNAG++
Sbjct: 56 VRGYAANVTDEEDVEATFAQIAEDFGQLNGLINNAGIL 93
|
Length = 253 |
| >gnl|CDD|187644 cd08940, HBDH_SDR_c, d-3-hydroxybutyrate dehydrogenase (HBDH), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 3e-09
Identities = 40/148 (27%), Positives = 62/148 (41%), Gaps = 11/148 (7%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDV--KDAGEV 73
GK A+VTGS +GIG A LA GA +++ A +I + K +V
Sbjct: 2 GKVALVTGSTSGIGLGIARALAAAGANIVL------NGFGDAAEIEAVRAGLAAKHGVKV 55
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLG 131
+ DLS ++ + +L+NNAG+ + ++ A N
Sbjct: 56 LYHGADLSKPAAIEDMVAYAQRQFGGVDILVNNAGIQHVAPIEDFPTEKWDAIIALNLSA 115
Query: 132 HYLFTLLLLPRIIKSAPARIINLSSLAH 159
+ T L LP + K RIIN++S H
Sbjct: 116 VFHTTRLALPHMKKQGWGRIINIAS-VH 142
|
DHBDH, an NAD+ -dependent enzyme, catalyzes the interconversion of D-3-hydroxybutyrate and acetoacetate. It is a classical SDR, with the canonical NAD-binding motif and active site tetrad. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 258 |
| >gnl|CDD|180753 PRK06924, PRK06924, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 3e-09
Identities = 60/198 (30%), Positives = 84/198 (42%), Gaps = 46/198 (23%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
+ I+TG++ G+G+ AN+L ++G VI R+ K T + S +
Sbjct: 2 RYVIITGTSQGLGEAIANQLLEKGTHVISISRTENKELTKLAEQYNS--------NLTFH 53
Query: 77 QLDLSSLKSVRKCAQEIL-----DNESAIHLLINNAGVMMCPRQLTEDGYELQFATN-HL 130
LDL + + EIL DN S+IH LINNAG M+ P + E + TN HL
Sbjct: 54 SLDLQDVHELETNFNEILSSIQEDNVSSIH-LINNAG-MVAPIKPIEKAESEELITNVHL 111
Query: 131 GHYLFTLLLLPRIIKS----------APARIINLSSLAHTWGDGSMHFEDINLEKGYSAT 180
LL P I+ S R+IN+SS A N G+S
Sbjct: 112 N------LLAPMILTSTFMKHTKDWKVDKRVINISSGAAK-----------NPYFGWS-- 152
Query: 181 GAYGRSKLANILFTTELA 198
AY SK +FT +A
Sbjct: 153 -AYCSSKAGLDMFTQTVA 169
|
Length = 251 |
| >gnl|CDD|181518 PRK08643, PRK08643, acetoin reductase; Validated | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 5e-09
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVI 75
K A+VTG+ GIG A L + G +V + + E A+ AAD + KD G+ +
Sbjct: 2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLS------KDGGKAIA 55
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQF 125
+ D+S V ++++D +++++NNAGV P E E QF
Sbjct: 56 VKADVSDRDQVFAAVRQVVDTFGDLNVVVNNAGV--APTTPIETITEEQF 103
|
Length = 256 |
| >gnl|CDD|184025 PRK13394, PRK13394, 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 7e-09
Identities = 32/98 (32%), Positives = 58/98 (59%), Gaps = 6/98 (6%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
+ L+GKTA+VTG+ +GIGK A ELA+ GA V +A + + A AD+I K G
Sbjct: 3 SNLNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEIN------KAGG 56
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV 109
+ + +D+++ +V ++ + ++ +L++NAG+
Sbjct: 57 KAIGVAMDVTNEDAVNAGIDKVAERFGSVDILVSNAGI 94
|
Length = 262 |
| >gnl|CDD|187649 cd08945, PKR_SDR_c, Polyketide ketoreductase, classical (c) SDR | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 8e-09
Identities = 42/152 (27%), Positives = 71/152 (46%), Gaps = 22/152 (14%)
Query: 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG-EV 73
D + A+VTG+ +GIG A L K G RV + R E + T++K++++AG E
Sbjct: 2 DSEVALVTGATSGIGLAIARRLGKEGLRVFVCARGEEG-------LATTVKELREAGVEA 54
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR-------QLTEDGYELQFA 126
R D+ S+ + + I +L+NNAG R +L ++ +
Sbjct: 55 DGRTCDVRSVPEIEALVAAAVARYGPIDVLVNNAG-----RSGGGATAELADELWLDVVE 109
Query: 127 TNHLGHYLFT--LLLLPRIIKSAPARIINLSS 156
TN G + T +L +++ RIIN++S
Sbjct: 110 TNLTGVFRVTKEVLKAGGMLERGTGRIINIAS 141
|
Polyketide ketoreductase (KR) is a classical SDR with a characteristic NAD-binding pattern and active site tetrad. Aromatic polyketides include various aromatic compounds of pharmaceutical interest. Polyketide KR, part of the type II polyketide synthase (PKS) complex, is comprised of stand-alone domains that resemble the domains found in fatty acid synthase and multidomain type I PKS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 258 |
| >gnl|CDD|235933 PRK07097, PRK07097, gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 1e-08
Identities = 35/149 (23%), Positives = 68/149 (45%), Gaps = 14/149 (9%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG-E 72
L GK A++TG++ GIG A AK GA ++ + E + L ++ G E
Sbjct: 8 LKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKG-------LAAYRELGIE 60
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM----MCPRQLTEDGYELQFATN 128
D++ V+ +I I +L+NNAG++ M +++ + + +
Sbjct: 61 AHGYVCDVTDEDGVQAMVSQIEKEVGVIDILVNNAGIIKRIPML--EMSAEDFRQVIDID 118
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSL 157
++ + ++P +IK +IIN+ S+
Sbjct: 119 LNAPFIVSKAVIPSMIKKGHGKIINICSM 147
|
Length = 265 |
| >gnl|CDD|181762 PRK09291, PRK09291, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 1e-08
Identities = 34/147 (23%), Positives = 64/147 (43%), Gaps = 18/147 (12%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG-EVV 74
KT ++TG+ +G G+ A LA++G VI + A + + G +
Sbjct: 2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQI-------APQVTALRAEAARRGLALR 54
Query: 75 IRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYEL---QFATNHLG 131
+ +LDL+ + A+ D + +L+NNAG+ + + EL F TN G
Sbjct: 55 VEKLDLTDAIDRAQAAE--WD----VDVLLNNAGIGE-AGAVVDIPVELVRELFETNVFG 107
Query: 132 HYLFTLLLLPRIIKSAPARIINLSSLA 158
T + +++ +++ SS+A
Sbjct: 108 PLELTQGFVRKMVARGKGKVVFTSSMA 134
|
Length = 257 |
| >gnl|CDD|181120 PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 2e-08
Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 28/140 (20%)
Query: 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVI---MACRSLEKAETAADDIRTS-L 64
T T L GK A+VTG+ G+G+ A LA+ GA V+ +A S A D+IR +
Sbjct: 5 TNTTDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVA--SALDASDVLDEIRAAGA 62
Query: 65 KDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHL-----LINNAGVMMCPRQL--- 116
K V AG++ S R A E++ +A+ L ++NNAG+ R L
Sbjct: 63 KAVAVAGDI-----------SQRATADELV--ATAVGLGGLDIVVNNAGITR-DRMLFNM 108
Query: 117 TEDGYELQFATNHLGHYLFT 136
+++ ++ A + GH+L T
Sbjct: 109 SDEEWDAVIAVHLRGHFLLT 128
|
Length = 306 |
| >gnl|CDD|131468 TIGR02415, 23BDH, acetoin reductases | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 3e-08
Identities = 54/192 (28%), Positives = 80/192 (41%), Gaps = 31/192 (16%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG-EVVI 75
K A+VTG GIGK A LAK G V +A + E A+ A K++ AG + V
Sbjct: 1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETA-------KEINQAGGKAVA 53
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCP----RQLTEDGYELQFATNHLG 131
+LD+S V + + +++NNAGV P ++TE+ + + N G
Sbjct: 54 YKLDVSDKDQVFSAIDQAAEKFGGFDVMVNNAGV--APITPILEITEEELKKVYNVNVKG 111
Query: 132 HYLFTLLLLPRIIK--SAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
LF + R K +IIN +S+A +G AY +K A
Sbjct: 112 -VLFGIQAAARQFKKQGHGGKIINAASIAG--------------HEGNPILSAYSSTKFA 156
Query: 190 NILFTTELAKRL 201
T A+ L
Sbjct: 157 VRGLTQTAAQEL 168
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PMID:11577733) [Energy metabolism, Fermentation]. Length = 254 |
| >gnl|CDD|183772 PRK12823, benD, 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 3e-08
Identities = 43/153 (28%), Positives = 65/153 (42%), Gaps = 18/153 (11%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
R GK +VTG+ GIG+ A A GARV++ RS E AA+ GE
Sbjct: 5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAAG-------GE 57
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAG--VMMCPRQLTEDGYELQFATNHL 130
+ DL + + ++ I +LINN G + P + YE + +
Sbjct: 58 ALALTADLETYAGAQAAMAAAVEAFGRIDVLINNVGGTIWAKPFE----EYEEEQIEAEI 113
Query: 131 GHYLFTLL-----LLPRIIKSAPARIINLSSLA 158
LF L +LP ++ I+N+SS+A
Sbjct: 114 RRSLFPTLWCCRAVLPHMLAQGGGAIVNVSSIA 146
|
Length = 260 |
| >gnl|CDD|168574 PRK06484, PRK06484, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 4e-08
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVV 74
+ +TG GIG+ A+ A G R+++ R E A+ A+ + E +
Sbjct: 268 SPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEAL---------GDEHL 318
Query: 75 IRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV 109
Q D++ +V +I + +L+NNAG+
Sbjct: 319 SVQADITDEAAVESAFAQIQARWGRLDVLVNNAGI 353
|
Length = 520 |
| >gnl|CDD|188170 TIGR01832, kduD, 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 5e-08
Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 8/97 (8%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L+GK A+VTG+NTG+G+ A LA+ GA ++ A RS E +ET +
Sbjct: 3 LEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRS-EPSETQQ-------QVEALGRRF 54
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM 110
+ DLS +++++ ++ I +L+NNAG++
Sbjct: 55 LSLTADLSDIEAIKALVDSAVEEFGHIDILVNNAGII 91
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 248 |
| >gnl|CDD|180822 PRK07069, PRK07069, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 5e-08
Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 5/142 (3%)
Query: 19 AIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQL 78
A +TG+ G+G+ A +A++GA+V + + D + G
Sbjct: 2 AFITGAAGGLGRAIARRMAEQGAKVFLTDIN---DAAGLDAFAAEINAAHGEGVAFAAVQ 58
Query: 79 DLSSLKSVRKCAQEILDNESAIHLLINNAGV--MMCPRQLTEDGYELQFATNHLGHYLFT 136
D++ + + D + +L+NNAGV Q+ D + A N +L
Sbjct: 59 DVTDEAQWQALLAQAADAMGGLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGC 118
Query: 137 LLLLPRIIKSAPARIINLSSLA 158
LP + S PA I+N+SS+A
Sbjct: 119 KHALPYLRASQPASIVNISSVA 140
|
Length = 251 |
| >gnl|CDD|188169 TIGR01829, AcAcCoA_reduct, acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 5e-08
Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 21/184 (11%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
+ A+VTG GIG LAK G RV C E+ A + +L + +
Sbjct: 1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGALGF-----DFRVV 55
Query: 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM--MCPRQLTEDGYELQFATNHLGHYL 134
+ D+SS +S + ++ I +L+NNAG+ +++T + + TN +
Sbjct: 56 EGDVSSFESCKAAVAKVEAELGPIDVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFN 115
Query: 135 FTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFT 194
T ++ + + RIIN+SS +N +KG Y +K I FT
Sbjct: 116 VTQPVIDGMRERGWGRIINISS--------------VNGQKGQFGQTNYSAAKAGMIGFT 161
Query: 195 TELA 198
LA
Sbjct: 162 KALA 165
|
This model represent acetoacetyl-CoA reductase, a member of the family short-chain-alcohol dehydrogenases. Note that, despite the precision implied by the enzyme name, the reaction of EC 1.1.1.36 is defined more generally as (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. Length = 242 |
| >gnl|CDD|235633 PRK05872, PRK05872, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 5e-08
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 7/100 (7%)
Query: 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKD 69
T L GK +VTG+ GIG A L RGA++ + + A L
Sbjct: 3 PMTSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAA----ELGGDDR 58
Query: 70 AGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV 109
VV D++ L +++ A+E ++ I +++ NAG+
Sbjct: 59 VLTVVA---DVTDLAAMQAAAEEAVERFGGIDVVVANAGI 95
|
Length = 296 |
| >gnl|CDD|187666 cd09806, type1_17beta-HSD-like_SDR_c, human estrogenic 17beta-hydroxysteroid dehydrogenase type 1 (type 1 17beta-HSD)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 5e-08
Identities = 37/146 (25%), Positives = 61/146 (41%), Gaps = 12/146 (8%)
Query: 17 KTAIVTGSNTGIGKCTANELA---KRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
++TG ++GIG A LA + +V R L+K + G +
Sbjct: 1 TVVLITGCSSGIGLHLAVRLASDPSKRFKVYATMRDLKKKGRLWEAAGALA-----GGTL 55
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-MMCPRQ-LTEDGYELQFATNHLG 131
QLD+ KSV + + + + +L+ NAGV ++ P + L+ED F N G
Sbjct: 56 ETLQLDVCDSKSVAAAVERVTERH--VDVLVCNAGVGLLGPLEALSEDAMASVFDVNVFG 113
Query: 132 HYLFTLLLLPRIIKSAPARIINLSSL 157
LP + + RI+ SS+
Sbjct: 114 TVRMLQAFLPDMKRRGSGRILVTSSV 139
|
17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. This classical SDR subgroup includes human type 1 17beta-HSD, human retinol dehydrogenase 8, zebrafish photoreceptor associated retinol dehydrogenase type 2, and a chicken ovary-specific 17beta-hydroxysteroid dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 258 |
| >gnl|CDD|236099 PRK07791, PRK07791, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 5e-08
Identities = 46/170 (27%), Positives = 72/170 (42%), Gaps = 31/170 (18%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIM---------ACRSLEKAETAADDIRTSL 64
LDG+ IVTG+ GIG+ A A GARV++ + A+ D+I +
Sbjct: 4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAA- 62
Query: 65 KDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV----MMCPRQLTEDG 120
GE V D++ ++ + +L+NNAG+ M+ ++E+
Sbjct: 63 -----GGEAVANGDDIADWDGAANLVDAAVETFGGLDVLVNNAGILRDRMIA--NMSEEE 115
Query: 121 YELQFATNHL-GHYLFTLLLLPRIIKSAP-------ARIINLSSLAHTWG 162
++ A HL GH+ TL ++ ARIIN SS A G
Sbjct: 116 WDAVIAV-HLKGHFA-TLRHAAAYWRAESKAGRAVDARIINTSSGAGLQG 163
|
Length = 286 |
| >gnl|CDD|236399 PRK09186, PRK09186, flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 5e-08
Identities = 35/152 (23%), Positives = 57/152 (37%), Gaps = 17/152 (11%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L GKT ++TG+ IG + + G VI A E + + K K +
Sbjct: 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLS--- 58
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLT-----EDGYELQFATN 128
+ +LD++ +S+ + + + I +N A PR D F N
Sbjct: 59 -LVELDITDQESLEEFLSKSAEKYGKIDGAVNCA----YPRNKDYGKKFFDVSLDDFNEN 113
Query: 129 ---HLGHY-LFTLLLLPRIIKSAPARIINLSS 156
HLG LF+ K ++N+SS
Sbjct: 114 LSLHLGSSFLFSQQFAKYFKKQGGGNLVNISS 145
|
Length = 256 |
| >gnl|CDD|187599 cd05340, Ycik_SDR_c, Escherichia coli K-12 YCIK-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 6e-08
Identities = 52/196 (26%), Positives = 86/196 (43%), Gaps = 28/196 (14%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L+ + +VTG++ GIG+ A A+ GA VI+ R+ EK AD I + G
Sbjct: 2 LNDRIILVTGASDGIGREAALTYARYGATVILLGRNEEKLRQVADHI-------NEEGGR 54
Query: 74 --VIRQLDL--SSLKSVRKCAQEILDNESAIHLLINNAGVM--MCP-RQLTEDGYELQFA 126
LDL + ++ ++ AQ I N + +++NAG++ +CP + ++
Sbjct: 55 QPQWFILDLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPLSEQNPQVWQDVXQ 114
Query: 127 TNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRS 186
N ++ T LLP ++KS ++ SS + G +G + GAY S
Sbjct: 115 VNVNATFMLTQALLPLLLKSDAGSLVFTSS---SVG-----------RQGRANWGAYAVS 160
Query: 187 KLANILFTTELAKRLQ 202
K A LA Q
Sbjct: 161 KFATEGLXQVLADEYQ 176
|
Escherichia coli K-12 YCIK and related proteins have a canonical classical SDR nucleotide-binding motif and active site tetrad. They are predicted oxoacyl-(acyl carrier protein/ACP) reductases. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 236 |
| >gnl|CDD|236357 PRK08945, PRK08945, putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 6e-08
Identities = 50/183 (27%), Positives = 82/183 (44%), Gaps = 28/183 (15%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG-- 71
L + +VTG+ GIG+ A A+ GA VI+ R+ EK E D+I + AG
Sbjct: 10 LKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEI-------EAAGGP 62
Query: 72 EVVIRQLDLSSLKS--VRKCAQEILDNESAIHLLINNAGVM--MCP-RQLTEDGYELQFA 126
+ I LDL + ++ A I + + +++NAG++ + P Q + ++
Sbjct: 63 QPAIIPLDLLTATPQNYQQLADTIEEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQ 122
Query: 127 TNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRS 186
N ++ T LLP ++KS A ++ SS G +G + GAY S
Sbjct: 123 VNVNATFMLTQALLPLLLKSPAASLVFTSS-----SVGR---------QGRANWGAYAVS 168
Query: 187 KLA 189
K A
Sbjct: 169 KFA 171
|
Length = 247 |
| >gnl|CDD|180802 PRK07035, PRK07035, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 7e-08
Identities = 22/48 (45%), Positives = 32/48 (66%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIR 61
L GK A+VTG++ GIG+ A LA++GA VI++ R L+ + AD I
Sbjct: 6 LTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIV 53
|
Length = 252 |
| >gnl|CDD|183489 PRK12384, PRK12384, sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 8e-08
Identities = 48/191 (25%), Positives = 79/191 (41%), Gaps = 31/191 (16%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVI 75
+ A+V G +G + LA+ G RV +A + EKA A +I G
Sbjct: 2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEY----GEGMAYG 57
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYE---LQFATNHLGH 132
D +S +SV ++ + + + LL+ NAG+ +T+ N +G+
Sbjct: 58 FGADATSEQSVLALSRGVDEIFGRVDLLVYNAGIAKAAF-ITDFQLGDFDRSLQVNLVGY 116
Query: 133 YL----FTLLLLPRIIKSAPARIINLSSLAHTWGD-GSMHFEDINLEKGYSATGAYGRSK 187
+L F+ L++ I+ RII ++S + G GS H GYSA +K
Sbjct: 117 FLCAREFSRLMIRDGIQ---GRIIQINSKS---GKVGSKH------NSGYSA------AK 158
Query: 188 LANILFTTELA 198
+ T LA
Sbjct: 159 FGGVGLTQSLA 169
|
Length = 259 |
| >gnl|CDD|180818 PRK07062, PRK07062, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 8e-08
Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 24/158 (15%)
Query: 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDA 70
+L+G+ A+VTG ++GIG T L + GA V + R E+ +A +R
Sbjct: 3 QIQLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPG---- 58
Query: 71 GEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-MMCPRQLTEDG-----YELQ 124
++ + D+ V A + + +L+NNAG + T D EL+
Sbjct: 59 ARLLAARCDVLDEADVAAFAAAVEARFGGVDMLVNNAGQGRVSTFADTTDDAWRDELELK 118
Query: 125 FATNHLGHYLFTLL-----LLPRIIKSAPARIINLSSL 157
+ F+++ LP + SA A I+ ++SL
Sbjct: 119 Y---------FSVINPTRAFLPLLRASAAASIVCVNSL 147
|
Length = 265 |
| >gnl|CDD|183719 PRK12747, PRK12747, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (125), Expect = 8e-08
Identities = 47/155 (30%), Positives = 71/155 (45%), Gaps = 19/155 (12%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL-EKAETAADDIRTSLKDVKDAGE 72
L GK A+VTG++ GIG+ A LA GA V + + E+AE +I++ + G
Sbjct: 2 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQS------NGGS 55
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNE-------SAIHLLINNAGVMMCP--RQLTEDGYEL 123
+L SL V LDNE + +LINNAG+ + TE ++
Sbjct: 56 AFSIGANLESLHGVEALYSS-LDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDR 114
Query: 124 QFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLA 158
+ N + L R+ + +RIIN+SS A
Sbjct: 115 MVSVNAKAPFFIIQQALSRLRDN--SRIINISSAA 147
|
Length = 252 |
| >gnl|CDD|237219 PRK12827, PRK12827, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 1e-07
Identities = 37/152 (24%), Positives = 70/152 (46%), Gaps = 13/152 (8%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIM----ACRSLEKAETAADDIRTSLKDVKD 69
LD + ++TG + G+G+ A LA GA VI+ R +A+ A I +
Sbjct: 4 LDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAA------ 57
Query: 70 AGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM--MCPRQLTEDGYELQFAT 127
G+ + D+ + R ++ + +L+NNAG+ +L+ + ++
Sbjct: 58 GGKALGLAFDVRDFAATRAALDAGVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDV 117
Query: 128 NHLGHYLFTLLLLPRIIKSAPA-RIINLSSLA 158
N G + T LP +I++ RI+N++S+A
Sbjct: 118 NLDGFFNVTQAALPPMIRARRGGRIVNIASVA 149
|
Length = 249 |
| >gnl|CDD|235713 PRK06139, PRK06139, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 1e-07
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L G ++TG+++GIG+ TA A+RGAR+++A R E + A++ R E
Sbjct: 4 PLHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECR------ALGAE 57
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV 109
V++ D++ V+ A + I + +NN GV
Sbjct: 58 VLVVPTDVTDADQVKALATQAASFGGRIDVWVNNVGV 94
|
Length = 330 |
| >gnl|CDD|180371 PRK06057, PRK06057, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 1e-07
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 11/97 (11%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RL G+ A++TG +GIG TA LA GA V++ E + AAD++ G
Sbjct: 4 RLAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEV---------GGL 54
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV 109
V D++ +V + ++ + NNAG+
Sbjct: 55 FV--PTDVTDEDAVNALFDTAAETYGSVDIAFNNAGI 89
|
Length = 255 |
| >gnl|CDD|187607 cd05349, BKR_2_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP]reductase (BKR), subgroup 2, classical (c) SDR | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-07
Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 18/149 (12%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMA-CRSLEKAETAADDIRTSLKDVKDAGEVVI 75
+ +VTG++ G+G A A+ GARV++ RS E AE A + +
Sbjct: 1 QVVLVTGASRGLGAAIARSFAREGARVVVNYYRSTESAEAVAAEA---------GERAIA 51
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNA--GVMMCPRQ------LTEDGYELQFAT 127
Q D+ V+ +E ++ + ++NNA P Q + + Y+ Q
Sbjct: 52 IQADVRDRDQVQAMIEEAKNHFGPVDTIVNNALIDFPFDPDQRKTFDTIDWEDYQQQLEG 111
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSS 156
G +LP + R+IN+ +
Sbjct: 112 AVKGALNLLQAVLPDFKERGSGRVINIGT 140
|
This subgroup includes Rhizobium sp. NGR234 FabG1. The Escherichai coli K12 BKR, FabG, belongs to a different subgroup. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 246 |
| >gnl|CDD|135631 PRK05867, PRK05867, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 2e-07
Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L GK A++TG++TGIGK A + GA+V +A R L+ E AD+I TS G+V
Sbjct: 7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTS------GGKV 60
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQ 124
V D+S + V ++ I + + NAG++ L E Q
Sbjct: 61 VPVCCDVSQHQQVTSMLDQVTAELGGIDIAVCNAGIITVTPMLDMPLEEFQ 111
|
Length = 253 |
| >gnl|CDD|181126 PRK07806, PRK07806, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 2e-07
Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRS-LEKAETAADDIRTSLKDVKDAGE 72
L GKTA+VTGS+ GIG TA LA GA V++ R +A +I G
Sbjct: 4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIE------AAGGR 57
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNA 107
DL+ +SV + + L+ NA
Sbjct: 58 ASAVGADLTDEESVAALMDTAREEFGGLDALVLNA 92
|
Length = 248 |
| >gnl|CDD|180343 PRK05993, PRK05993, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-07
Identities = 42/179 (23%), Positives = 67/179 (37%), Gaps = 35/179 (19%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
++ ++TG ++GIG A L G RV CR E + +
Sbjct: 5 RSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEAEGLEAF------------ 52
Query: 77 QLDLSSLKSVRKCAQEILD-NESAIHLLINN-----AGVMMCPRQLTEDGYELQFATNHL 130
QLD + +S+ ++L+ + + L NN G + L + QF N
Sbjct: 53 QLDYAEPESIAALVAQVLELSGGRLDALFNNGAYGQPGAV---EDLPTEALRAQFEANFF 109
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
G + T ++P + K RI+ SS+ G M + GAY SK A
Sbjct: 110 GWHDLTRRVIPVMRKQGQGRIVQCSSIL---GLVPMKYR-----------GAYNASKFA 154
|
Length = 277 |
| >gnl|CDD|235794 PRK06398, PRK06398, aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-07
Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 19/146 (13%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L K AIVTG + GIGK N L + G+ VI E + D +
Sbjct: 4 LKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIK-EPSYNDVDYFK------------ 50
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-MMCPRQLTEDG-YELQFATNHLG 131
+D+S+ + V K ++ I +L+NNAG+ E+ ++ N G
Sbjct: 51 ----VDVSNKEQVIKGIDYVISKYGRIDILVNNAGIESYGAIHAVEEDEWDRIINVNVNG 106
Query: 132 HYLFTLLLLPRIIKSAPARIINLSSL 157
+L + +P ++K IIN++S+
Sbjct: 107 IFLMSKYTIPYMLKQDKGVIINIASV 132
|
Length = 258 |
| >gnl|CDD|180617 PRK06550, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 2e-07
Identities = 48/208 (23%), Positives = 74/208 (35%), Gaps = 65/208 (31%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVI 75
KT ++TG+ +GIG A +GA+V + + + D+ D E
Sbjct: 5 TKTVLITGAASGIGLAQARAFLAQGAQVYGV--DKQDKPDLSGNFHFLQLDLSDDLE--- 59
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGY---------ELQ-- 124
+ D ++ +L N AG++ D Y E Q
Sbjct: 60 ----------------PLFDWVPSVDILCNTAGIL--------DDYKPLLDTSLEEWQHI 95
Query: 125 FATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATG--- 181
F TN +L T LP++++ IIN+ S+A + A G
Sbjct: 96 FDTNLTSTFLLTRAYLPQMLERKSGIIINMCSIA-----------------SFVAGGGGA 138
Query: 182 AYGRSKLANILFTTELA-----KRLQVN 204
AY SK A FT +LA +QV
Sbjct: 139 AYTASKHALAGFTKQLALDYAKDGIQVF 166
|
Length = 235 |
| >gnl|CDD|166421 PLN02780, PLN02780, ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 3e-07
Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 8/147 (5%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVI 75
G A+VTG GIGK A +LA++G +++ R+ +K + +D I++ + VV
Sbjct: 53 GSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVD 112
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMM-CPRQLTEDGYEL---QFATNHLG 131
D+ + V++ + I + + LINN GV R E EL N G
Sbjct: 113 FSGDID--EGVKRIKETIEGLDVGV--LINNVGVSYPYARFFHEVDEELLKNLIKVNVEG 168
Query: 132 HYLFTLLLLPRIIKSAPARIINLSSLA 158
T +LP ++K IIN+ S A
Sbjct: 169 TTKVTQAVLPGMLKRKKGAIINIGSGA 195
|
Length = 320 |
| >gnl|CDD|235739 PRK06200, PRK06200, 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 4e-07
Identities = 38/160 (23%), Positives = 67/160 (41%), Gaps = 18/160 (11%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L G+ A++TG +GIG+ GARV + RS EK + +R D
Sbjct: 3 WLHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLAS----LRQRFGD-----H 53
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM--------MCPRQLTEDGYELQ 124
V++ + D++S ++ + +D + + NAG+ + L + ++
Sbjct: 54 VLVVEGDVTSYADNQRAVDQTVDAFGKLDCFVGNAGIWDYNTSLVDIPAETL-DTAFDEI 112
Query: 125 FATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDG 164
F N G+ L LP + S + I LS+ + G G
Sbjct: 113 FNVNVKGYLLGAKAALPALKASGGSMIFTLSNSSFYPGGG 152
|
Length = 263 |
| >gnl|CDD|236056 PRK07576, PRK07576, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 4e-07
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 6/95 (6%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
GK +V G +GI A A+ GA V +A RS EK + A ++ E
Sbjct: 6 DFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQ------AGPE 59
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNA 107
+ D+ +V +I D I +L++ A
Sbjct: 60 GLGVSADVRDYAAVEAAFAQIADEFGPIDVLVSGA 94
|
Length = 264 |
| >gnl|CDD|180669 PRK06720, PRK06720, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 5e-07
Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
+L GK AIVTG GIG+ TA LAK+GA+VI+ E + ++I T+L GE
Sbjct: 13 KLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEI-TNL-----GGE 66
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV 109
+ D+ ++ L+ S I +L NAG+
Sbjct: 67 ALFVSYDMEKQGDWQRVISITLNAFSRIDMLFQNAGL 103
|
Length = 169 |
| >gnl|CDD|235545 PRK05650, PRK05650, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 5e-07
Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 8/140 (5%)
Query: 21 VTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDL 80
+TG+ +G+G+ A A+ G R+ +A + E E +R G+ ++ D+
Sbjct: 5 ITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLRE------AGGDGFYQRCDV 58
Query: 81 SSLKSVRKCAQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLL 138
+ AQ + I +++NNAGV +L+ + ++ Q A N +G
Sbjct: 59 RDYSQLTALAQACEEKWGGIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKA 118
Query: 139 LLPRIIKSAPARIINLSSLA 158
LP + RI+N++S+A
Sbjct: 119 FLPLFKRQKSGRIVNIASMA 138
|
Length = 270 |
| >gnl|CDD|187647 cd08943, R1PA_ADH_SDR_c, rhamnulose-1-phosphate aldolase/alcohol dehydrogenase, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 5e-07
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 9/121 (7%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVI 75
GK A+VTG +GIG A LA GA V++A E AE A+ A V
Sbjct: 1 GKVALVTGGASGIGLAIAKRLAAEGAAVVVADIDPEIAEKVAEA--AQGGP--RALGVQC 56
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNHLGHY 133
D++S V+ ++ + + ++++NAG+ + + + + N GH+
Sbjct: 57 ---DVTSEAQVQSAFEQAVLEFGGLDIVVSNAGIATSSPIAETSLEDWNRSMDINLTGHF 113
Query: 134 L 134
L
Sbjct: 114 L 114
|
This family has bifunctional proteins with an N-terminal aldolase and a C-terminal classical SDR domain. One member is identified as a rhamnulose-1-phosphate aldolase/alcohol dehydrogenase. The SDR domain has a canonical SDR glycine-rich NAD(P) binding motif and a match to the characteristic active site triad. However, it lacks an upstream active site Asn typical of SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|180446 PRK06180, PRK06180, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 5e-07
Identities = 39/187 (20%), Positives = 61/187 (32%), Gaps = 45/187 (24%)
Query: 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVV 74
KT ++TG ++G G+ A G RV+ RS +
Sbjct: 3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEA---------LHPDRAL 53
Query: 75 IRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYE------------ 122
R LD++ ++ + I +L+NNAG G+E
Sbjct: 54 ARLLDVTDFDAIDAVVADAEATFGPIDVLVNNAGY----------GHEGAIEESPLAEMR 103
Query: 123 LQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGA 182
QF N G T +LP + I+N++S+ G + G
Sbjct: 104 RQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITSMG-----GLITM---------PGIGY 149
Query: 183 YGRSKLA 189
Y SK A
Sbjct: 150 YCGSKFA 156
|
Length = 277 |
| >gnl|CDD|187591 cd05330, cyclohexanol_reductase_SDR_c, cyclohexanol reductases, including levodione reductase, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 5e-07
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 19/169 (11%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
K ++TG +G+G TA LAK GA++ + ++ E + + +L ++ EV++
Sbjct: 4 KVVLITGGGSGLGLATAVRLAKEGAKLSL----VDLNEEGLEAAKAALLEIAPDAEVLLI 59
Query: 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQ-LTEDGYELQF----ATNHLG 131
+ D+S V ++ I NNAG+ +Q LTED +F + N G
Sbjct: 60 KADVSDEAQVEAYVDATVEQFGRIDGFFNNAGIE--GKQNLTEDFGADEFDKVVSINLRG 117
Query: 132 HYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSAT 180
+ +L + + I+N +S+ G G+ + GY+A
Sbjct: 118 VFYGLEKVLKVMREQGSGMIVNTASVGGIRGVGN--------QSGYAAA 158
|
Cyloclohexanol reductases,including (6R)-2,2,6-trimethyl-1,4-cyclohexanedione (levodione) reductase of Corynebacterium aquaticum, catalyze the reversible oxidoreduction of hydroxycyclohexanone derivatives. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257 |
| >gnl|CDD|180796 PRK07023, PRK07023, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 5e-07
Identities = 37/145 (25%), Positives = 56/145 (38%), Gaps = 14/145 (9%)
Query: 19 AIVTGSNTGIGKCTANELAKRGARVIMACRSL--EKAETAADDIRTSLKDVKDAGEVVIR 76
AIVTG + G+G A +L + G V+ RS A A + + D+ DA
Sbjct: 4 AIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHPSLAAAAGERLAEVELDLSDAAAAA-- 61
Query: 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQL-TEDGYELQ--FATNHLGHY 133
+ + ++ LLINNAG + L T D + N
Sbjct: 62 -------AWLAGDLLAAFVDGASRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPL 114
Query: 134 LFTLLLLPRIIKSAPARIINLSSLA 158
+ T L +A RI+++SS A
Sbjct: 115 MLTAALAQAASDAAERRILHISSGA 139
|
Length = 243 |
| >gnl|CDD|187635 cd08930, SDR_c8, classical (c) SDR, subgroup 8 | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 6e-07
Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 12/147 (8%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVI 75
K ++TG+ IGK L GAR+I+A + E +++ T+L V+
Sbjct: 2 DKIILITGAAGLIGKAFCKALLSAGARLILADINAPALEQLKEEL-TNLYKN----RVIA 56
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAG--VMMCPRQLTEDGYELQFATN---HL 130
+LD++S +S+++ + L+ I +LINNA + + E YE Q+ +L
Sbjct: 57 LELDITSKESIKELIESYLEKFGRIDILINNAYPSPKVWGSRFEEFPYE-QWNEVLNVNL 115
Query: 131 GHY-LFTLLLLPRIIKSAPARIINLSS 156
G L + + K IIN++S
Sbjct: 116 GGAFLCSQAFIKLFKKQGKGSIINIAS 142
|
This subgroup has a fairly well conserved active site tetrad and domain size of the classical SDRs, but has an atypical NAD-binding motif ([ST]G[GA]XGXXG). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|171820 PRK12936, PRK12936, 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 7e-07
Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 25/159 (15%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L G+ A+VTG++ GIG+ A L +GA V + +EK E A ++ +K
Sbjct: 4 LSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAELGERVK-------- 55
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFA------- 126
I +LS V+ Q+ + + +L+NNAG+ T+DG ++ +
Sbjct: 56 -IFPANLSDRDEVKALGQKAEADLEGVDILVNNAGI-------TKDGLFVRMSDEDWDSV 107
Query: 127 --TNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGD 163
N + T L +++ RIIN++S+ G+
Sbjct: 108 LEVNLTATFRLTRELTHPMMRRRYGRIINITSVVGVTGN 146
|
Length = 245 |
| >gnl|CDD|130890 TIGR01831, fabG_rel, 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 7e-07
Identities = 49/192 (25%), Positives = 86/192 (44%), Gaps = 25/192 (13%)
Query: 20 IVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLD 79
+VTG++ GIG+ AN LA G + + S + A+ + +++ G + Q D
Sbjct: 2 LVTGASRGIGRAIANRLAADGFEICVHYHS---GRSDAESVVSAI--QAQGGNARLLQFD 56
Query: 80 LSSLKSVRKCAQEILDNESAIHLLINNAGVM---MCPRQLTEDGYELQFATNHLGHY-LF 135
++ + R + + A + ++ NAG+ P L+E+ +++ TN G Y +
Sbjct: 57 VADRVACRTLLEADIAEHGAYYGVVLNAGITRDAAFP-ALSEEDWDIVIHTNLDGFYNVI 115
Query: 136 TLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSAT--GAYGRSKLANILF 193
+P I RII L+S++ G+ + YSA G G +K +
Sbjct: 116 HPCTMPMIRARQGGRIITLASVSGVMGNRG--------QVNYSAAKAGLIGATKALAV-- 165
Query: 194 TTELAKR-LQVN 204
ELAKR + VN
Sbjct: 166 --ELAKRKITVN 175
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 239 |
| >gnl|CDD|181668 PRK09135, PRK09135, pteridine reductase; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 9e-07
Identities = 47/194 (24%), Positives = 75/194 (38%), Gaps = 31/194 (15%)
Query: 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACR-SLEKAETAADDIRTSLKDVKDAGEV 73
K A++TG IG A L G RV + S +A+ A + L ++ G
Sbjct: 5 SAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAE----LNALR-PGSA 59
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR---QLTEDGYELQFATNHL 130
Q DL ++ + + + L+NNA P +TE ++ FA+N
Sbjct: 60 AALQADLLDPDALPELVAACVAAFGRLDALVNNASSFY-PTPLGSITEAQWDDLFASNLK 118
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLE---KGYSATGAYGRSK 187
+ + P++ K A I+N++ DI+ E KGY Y +K
Sbjct: 119 APFFLSQAAAPQLRKQRGA-IVNIT--------------DIHAERPLKGYP---VYCAAK 160
Query: 188 LANILFTTELAKRL 201
A + T LA L
Sbjct: 161 AALEMLTRSLALEL 174
|
Length = 249 |
| >gnl|CDD|234422 TIGR03971, SDR_subfam_1, oxidoreductase, SDR family | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 9e-07
Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 12/156 (7%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIM--ACRSLEK-----AETAADDIRTSLKD 66
L+GK A +TG+ G G+ A LA GA +I C L T D T+ +
Sbjct: 1 LEGKVAFITGAARGQGRAHAVRLAAEGADIIAIDLCAPLSDYPTYPLATREDLDETA-RL 59
Query: 67 VKDAG-EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYEL 123
V+ G +V+ R+ D+ L VR ++ ++ + +++ NAGV+ R +L+E+ ++
Sbjct: 60 VEALGRKVLARKADVRDLAEVRAVVEDGVEQFGRLDVVVANAGVLSYGRSWELSEEQWDT 119
Query: 124 QFATNHLGHYLFTLLLLPRIIKSAP-ARIINLSSLA 158
N G + ++P +I+ II SS+A
Sbjct: 120 VLDINLTGVWRTCKAVVPHMIERGNGGSIIITSSVA 155
|
Members of this protein subfamily are putative oxidoreductases belonging to the larger SDR family. Members of the present subfamily may occur several to a genome and are largely restricted to genomes that contain members of families TIGR03962, TIGR03967, and TIGR03969. Many members have been annotated by homology as carveol dehydrogenases. Length = 265 |
| >gnl|CDD|187608 cd05350, SDR_c6, classical (c) SDR, subgroup 6 | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 1e-06
Identities = 33/143 (23%), Positives = 60/143 (41%), Gaps = 10/143 (6%)
Query: 19 AIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQL 78
++TG+++GIG+ A E AK G V +A R ++ + ++ + V + L
Sbjct: 1 VLITGASSGIGRALAREFAKAGYNVALAARRTDRLDELKAEL------LNPNPSVEVEIL 54
Query: 79 DLSSLKSVRKCAQEILDNESAIHLLINNAGVMM---CPRQLTEDGYELQFATNHLGHYLF 135
D++ + + E+ + L+I NAGV + E TN LG
Sbjct: 55 DVTDEERNQLVIAELEAELGGLDLVIINAGVGKGTSLGDLSFKAFRET-IDTNLLGAAAI 113
Query: 136 TLLLLPRIIKSAPARIINLSSLA 158
LP+ ++ +SS+A
Sbjct: 114 LEAALPQFRAKGRGHLVLISSVA 136
|
These proteins are members of the classical SDR family, with a canonical active site tetrad and a fairly well conserved typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 239 |
| >gnl|CDD|187664 cd09763, DHRS1-like_SDR_c, human dehydrogenase/reductase (SDR family) member 1 (DHRS1) -like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 2e-06
Identities = 44/200 (22%), Positives = 80/200 (40%), Gaps = 32/200 (16%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLE-KAETAADDIRTSLKDVKDAGE 72
L GK A+VTG++ GIG+ A +L + GA V + R++ + A++I G+
Sbjct: 1 LSGKIALVTGASRGIGRGIALQLGEAGATVYITGRTILPQLPGTAEEIEAR------GGK 54
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESA-IHLLINNA--GVMMCPRQLTEDGYELQ----- 124
+ + D S V + + + + +L+NNA V + + + +E
Sbjct: 55 CIPVRCDHSDDDEVEALFERVAREQQGRLDILVNNAYAAVQLILVGVAKPFWEEPPTIWD 114
Query: 125 --FATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGA 182
HY ++ P ++K+ I+ +SS T G + A
Sbjct: 115 DINNVGLRAHYACSVYAAPLMVKAGKGLIVIISS---TGGLEYLF------------NVA 159
Query: 183 YGRSKLANILFTTELAKRLQ 202
YG K A ++A L+
Sbjct: 160 YGVGKAAIDRMAADMAHELK 179
|
This subgroup includes human DHRS1 and related proteins. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. DHRS1 mRNA has been detected in many tissues, liver, heart, skeletal muscle, kidney and pancreas; a longer transcript is predominantly expressed in the liver , a shorter one in the heart. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 265 |
| >gnl|CDD|236207 PRK08261, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 2e-06
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 19/101 (18%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETA----ADDIR-TSLKDVK 68
L GK A+VTG+ GIG A LA+ GA V+ C + A A A+ + T+L
Sbjct: 208 LAGKVALVTGAARGIGAAIAEVLARDGAHVV--CLDVPAAGEALAAVANRVGGTAL---- 261
Query: 69 DAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV 109
LD+++ + + A+ + + + ++++NAG+
Sbjct: 262 --------ALDITAPDAPARIAEHLAERHGGLDIVVHNAGI 294
|
Length = 450 |
| >gnl|CDD|183716 PRK12744, PRK12744, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-06
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 6/130 (4%)
Query: 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVK 68
AD L GK ++ G +G A +LA +GA+ + + ++ A++ ++ VK
Sbjct: 1 MADHSLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEE---TVAAVK 57
Query: 69 DAG-EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAG-VMMCP-RQLTEDGYELQF 125
AG + V Q DL++ +V K + + IN G V+ P +++E Y+ F
Sbjct: 58 AAGAKAVAFQADLTTAAAVEKLFDDAKAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMF 117
Query: 126 ATNHLGHYLF 135
A N + F
Sbjct: 118 AVNSKSAFFF 127
|
Length = 257 |
| >gnl|CDD|180771 PRK06947, PRK06947, glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 2e-06
Identities = 43/155 (27%), Positives = 64/155 (41%), Gaps = 13/155 (8%)
Query: 15 DGKTAIVTGSNTGIGKCTANELAKRGARV-IMACRSLEKAETAADDIRTSLKDVKDAGEV 73
K ++TG++ GIG+ TA A RG V I R AE AD +R + G
Sbjct: 1 MRKVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAA------GGRA 54
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTE---DGYELQFATNHL 130
+ D+++ V + + L+NNAG++ L + F TN L
Sbjct: 55 CVVAGDVANEADVIAMFDAVQSAFGRLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVL 114
Query: 131 GHYLFTLLLLPRIIKSAPAR---IINLSSLAHTWG 162
G YL R+ R I+N+SS+A G
Sbjct: 115 GAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLG 149
|
Length = 248 |
| >gnl|CDD|181159 PRK07890, PRK07890, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 2e-06
Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 12/149 (8%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG-E 72
L GK +V+G G+G+ A A+ GA V++A R+ E+ + A +I D G
Sbjct: 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEID-------DLGRR 55
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM--MCPRQLTE-DGYELQFATNH 129
+ D++ L+ + L+NNA + M P + + N
Sbjct: 56 ALAVPTDITDEDQCANLVALALERFGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNV 115
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLA 158
LG T P + +S + I+ ++S+
Sbjct: 116 LGTLRLTQAFTPALAESGGS-IVMINSMV 143
|
Length = 258 |
| >gnl|CDD|187662 cd09761, A3DFK9-like_SDR_c, Clostridium thermocellum A3DFK9-like, a putative carbohydrate or polyalcohol metabolizing SDR, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 2e-06
Identities = 38/144 (26%), Positives = 59/144 (40%), Gaps = 14/144 (9%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVI 75
GK AIVTG GIGK + + G +V+ A E+ A+ +L V
Sbjct: 1 GKVAIVTGGGHGIGKQICLDFLEAGDKVVFADIDEERGADFAEAEGPNLFFVH------- 53
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYE---LQFATNHLGH 132
D++ V+ +L+ I +L+NNA L+ E + N G
Sbjct: 54 --GDVADETLVKFVVYAMLEKLGRIDVLVNNAAR-GSKGILSSLLLEEWDRILSVNLTGP 110
Query: 133 YLFTLLLLPRIIKSAPARIINLSS 156
Y + +IK+ RIIN++S
Sbjct: 111 YELSRYCRDELIKNK-GRIINIAS 133
|
This subgroup includes a putative carbohydrate or polyalcohol metabolizing SDR (A3DFK9) from Clostridium thermocellum. Its members have a TGXXXGXG classical-SDR glycine-rich NAD-binding motif, and some have a canonical SDR active site tetrad (A3DFK9 lacks the upstream Asn). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 242 |
| >gnl|CDD|171821 PRK12937, PRK12937, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 3e-06
Identities = 40/145 (27%), Positives = 62/145 (42%), Gaps = 9/145 (6%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L K AIVTG++ GIG A LA G V + + AAD++ + G
Sbjct: 3 LSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAG---SAAAADELVAEI--EAAGGRA 57
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNHLG 131
+ Q D++ +V + I +L+NNAGVM + ++ ATN G
Sbjct: 58 IAVQADVADAAAVTRLFDAAETAFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRG 117
Query: 132 HYLFTLLLLPRIIKSAPARIINLSS 156
++ + + RIINLS+
Sbjct: 118 AFVVLREAARHLGQG--GRIINLST 140
|
Length = 245 |
| >gnl|CDD|181334 PRK08263, PRK08263, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 3e-06
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 29/178 (16%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDA-GEVV 74
K +TG++ G G+ +RG RV+ R L D+ + G+ +
Sbjct: 3 EKVWFITGASRGFGRAWTEAALERGDRVVATARDTAT-----------LADLAEKYGDRL 51
Query: 75 IR-QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM-MCP-RQLTEDGYELQFATNHLG 131
+ LD++ +V + +++ + +++NNAG ++TE Q TN G
Sbjct: 52 LPLALDVTDRAAVFAAVETAVEHFGRLDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFG 111
Query: 132 HYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
T +LP + + II +SS+ G + +G Y SK A
Sbjct: 112 ALWVTQAVLPYLREQRSGHIIQISSIG-----GIS---------AFPMSGIYHASKWA 155
|
Length = 275 |
| >gnl|CDD|235813 PRK06482, PRK06482, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 4e-06
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 11/143 (7%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVI 75
KT +TG+++G G+ L RG RV R + A DD++ D + +
Sbjct: 2 SKTWFITGASSGFGRGMTERLLARGDRVAATVRRPD----ALDDLKARYGD-----RLWV 52
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMM--CPRQLTEDGYELQFATNHLGHY 133
QLD++ +VR I ++++NAG + +L++ Q TN +G
Sbjct: 53 LQLDVTDSAAVRAVVDRAFAALGRIDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSI 112
Query: 134 LFTLLLLPRIIKSAPARIINLSS 156
LP + + RI+ +SS
Sbjct: 113 QVIRAALPHLRRQGGGRIVQVSS 135
|
Length = 276 |
| >gnl|CDD|219957 pfam08659, KR, KR domain | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 5e-06
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 18 TAIVTGSNTGIGKCTANELAKRGARVIMAC-RSLEKAETAADDIRTSLKDVKDAG-EVVI 75
T +VTG G+G A LA+RGAR ++ RS A + +++ G EV +
Sbjct: 2 TYLVTGGLGGLGLELARWLAERGARHLVLLSRSGAPDPEAEALLA----ELEARGAEVTV 57
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV 109
D+S +VR EI + + +I+ AGV
Sbjct: 58 VACDVSDRDAVRALLAEIRADGPPLRGVIHAAGV 91
|
This enzymatic domain is part of bacterial polyketide synthases and catalyzes the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. Length = 181 |
| >gnl|CDD|187656 cd08953, KR_2_SDR_x, ketoreductase (KR), subgroup 2, complex (x) SDRs | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 5e-06
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 6/116 (5%)
Query: 15 DGKTAIVTGSNTGIGKCTANELAKR-GARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
G +VTG GIG+ A LA+R GAR+++ RS + +L ++ G
Sbjct: 204 PGGVYLVTGGAGGIGRALARALARRYGARLVLLGRS--PLPPEEEWKAQTLAALEALGAR 261
Query: 74 VI-RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM--MCPRQLTEDGYELQFA 126
V+ D++ +VR+ +++ + AI +I+ AGV+ Q T + +E A
Sbjct: 262 VLYISADVTDAAAVRRLLEKVRERYGAIDGVIHAAGVLRDALLAQKTAEDFEAVLA 317
|
Ketoreductase, a module of the multidomain polyketide synthase (PKS), has 2 subdomains, each corresponding to a SDR family monomer. The C-terminal subdomain catalyzes the NADPH-dependent reduction of the beta-carbonyl of a polyketide to a hydroxyl group, a step in the biosynthesis of polyketides, such as erythromycin. The N-terminal subdomain, an interdomain linker, is a truncated Rossmann fold which acts to stabilizes the catalytic subdomain. Unlike typical SDRs, the isolated domain does not oligomerize but is composed of 2 subdomains, each resembling an SDR monomer. The active site resembles that of typical SDRs, except that the usual positions of the catalytic Asn and Tyr are swapped, so that the canonical YXXXK motif changes to YXXXN. Modular PKSs are multifunctional structures in which the makeup recapitulates that found in (and may have evolved from) FAS. Polyketide synthesis also proceeds via the addition of 2-carbon units as in fatty acid synthesis. The complex SDR NADP-binding motif, GGXGXXG, is often present, but is not strictly conserved in each instance of the module. This subfamily includes both KR domains of the Bacillus subtilis Pks J,-L, and PksM, and all three KR domains of PksN, components of the megacomplex bacillaene synthase, which synthesizes the antibiotic bacillaene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 436 |
| >gnl|CDD|133446 cd01078, NAD_bind_H4MPT_DH, NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 9e-06
Identities = 25/62 (40%), Positives = 35/62 (56%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
L GKTA+V G +G+ A LA+ GARV++ R LE+A+ AAD +R + A
Sbjct: 24 KDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAV 83
Query: 72 EV 73
E
Sbjct: 84 ET 85
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 194 |
| >gnl|CDD|181508 PRK08628, PRK08628, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 9e-06
Identities = 54/198 (27%), Positives = 75/198 (37%), Gaps = 41/198 (20%)
Query: 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDA 70
D L K IVTG +GIG + LA+ GA ++ RS E A+++R
Sbjct: 2 DLNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEF-AEELR------ALQ 54
Query: 71 GEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNH- 129
Q+DL+ R ++ + I L+NNAGV DG L+ A
Sbjct: 55 PRAEFVQVDLTDDAQCRDAVEQTVAKFGRIDGLVNNAGV--------NDGVGLE-AGREA 105
Query: 130 --------LGHY-LFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSAT 180
L HY + LP + S A I+N+SS G G T
Sbjct: 106 FVASLERNLIHYYVMAHYCLPHLKASRGA-IVNISSKTALTGQGG--------------T 150
Query: 181 GAYGRSKLANILFTTELA 198
Y +K A + T E A
Sbjct: 151 SGYAAAKGAQLALTREWA 168
|
Length = 258 |
| >gnl|CDD|214833 smart00822, PKS_KR, This enzymatic domain is part of bacterial polyketide synthases | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 1e-05
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGAR-VIMACRSLEKAETAADDIRTSLKDVKDAG-EVV 74
T ++TG G+G+ A LA+RGAR +++ RS A AA + +++ AG V
Sbjct: 1 GTYLITGGLGGLGRALARWLAERGARRLVLLSRSGPDAPGAAALLA----ELEAAGARVT 56
Query: 75 IRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV 109
+ D++ ++ I E + +I+ AGV
Sbjct: 57 VVACDVADRDALAAVLAAIPAVEGPLTGVIHAAGV 91
|
It catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. Length = 180 |
| >gnl|CDD|135637 PRK05876, PRK05876, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 1e-05
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
G+ A++TG +GIG T E A+RGARV++ A + +R DV
Sbjct: 4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGV--- 60
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMM 111
D+ + V A E + ++ +NAG+++
Sbjct: 61 ---MCDVRHREEVTHLADEAFRLLGHVDVVFSNAGIVV 95
|
Length = 275 |
| >gnl|CDD|235853 PRK06701, PRK06701, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-05
Identities = 55/193 (28%), Positives = 89/193 (46%), Gaps = 26/193 (13%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
+L GK A++TG ++GIG+ A AK GA + + L++ E A + T + K+ +
Sbjct: 43 KLKGKVALITGGDSGIGRAVAVLFAKEGADIAIV--YLDEHEDANE---TKQRVEKEGVK 97
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQ----LTEDGYELQFATN 128
++ D+S + +E + + +L+NNA P+Q +T + + F TN
Sbjct: 98 CLLIPGDVSDEAFCKDAVEETVRELGRLDILVNNAAFQY-PQQSLEDITAEQLDKTFKTN 156
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
++ T LP +K A IIN S+ T +G+ D YSAT K
Sbjct: 157 IYSYFHMTKAALPH-LKQGSA-IINTGSI--TGYEGNETLID------YSAT------KG 200
Query: 189 ANILFTTELAKRL 201
A FT LA+ L
Sbjct: 201 AIHAFTRSLAQSL 213
|
Length = 290 |
| >gnl|CDD|180411 PRK06123, PRK06123, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 1e-05
Identities = 41/148 (27%), Positives = 71/148 (47%), Gaps = 11/148 (7%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
K I+TG++ GIG TA A+RG V C + + AA+ + +++ GE +
Sbjct: 3 KVMIITGASRGIGAATALLAAERGYAV---CLNYLRNRDAAEAVVQAIRR--QGGEALAV 57
Query: 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTE-DGYELQ--FATNHLGHY 133
D++ V + + + + L+NNAG++ +L + D L FATN +G +
Sbjct: 58 AADVADEADVLRLFEAVDRELGRLDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSF 117
Query: 134 LFTLLLLPRIIKSAPAR---IINLSSLA 158
L + R+ R I+N+SS+A
Sbjct: 118 LCAREAVKRMSTRHGGRGGAIVNVSSMA 145
|
Length = 248 |
| >gnl|CDD|235914 PRK07041, PRK07041, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 20 IVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDI------RTSLKDVKDAGEV 73
+V G ++GIG A A GARV +A RS ++ AA + RT+ D+ D V
Sbjct: 1 LVVGGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALGGGAPVRTAALDITDEAAV 60
|
Length = 230 |
| >gnl|CDD|187606 cd05348, BphB-like_SDR_c, cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase (BphB)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 37/159 (23%), Positives = 64/159 (40%), Gaps = 16/159 (10%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L G+ A++TG +G+G+ GA+V + RS EK D DA
Sbjct: 1 WLKGEVALITGGGSGLGRALVERFVAEGAKVAVLDRSAEKVAELR-------ADFGDA-- 51
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-------MMCPRQLTEDGYELQF 125
VV + D+ SL + ++ + I NAG+ + P + ++ ++ F
Sbjct: 52 VVGVEGDVRSLADNERAVARCVERFGKLDCFIGNAGIWDYSTSLVDIPEEKLDEAFDELF 111
Query: 126 ATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDG 164
N G+ L LP + + + I +S+ G G
Sbjct: 112 HINVKGYILGAKAALPALYATEGSVIFTVSNAGFYPGGG 150
|
cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase (BphB) is a classical SDR, it is of particular importance for its role in the degradation of biphenyl/polychlorinated biphenyls(PCBs); PCBs are a significant source of environmental contamination. This subgroup also includes Pseudomonas putida F1 cis-biphenyl-1,2-dihydrodiol-1,2-dehydrogenase (aka cis-benzene glycol dehydrogenase, encoded by the bnzE gene), which participates in benzene metabolism. In addition it includes Pseudomonas sp. C18 putative 1,2-dihydroxy-1,2-dihydronaphthalene dehydrogenase (aka dibenzothiophene dihydrodiol dehydrogenase, encoded by the doxE gene) which participates in an upper naphthalene catabolic pathway. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257 |
| >gnl|CDD|187592 cd05331, DH-DHB-DH_SDR_c, 2,3 dihydro-2,3 dihydrozybenzoate dehydrogenases, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 2e-05
Identities = 51/187 (27%), Positives = 72/187 (38%), Gaps = 33/187 (17%)
Query: 19 AIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQL 78
IVTG+ GIG+ A L + GA VI D +R + DV DA
Sbjct: 1 VIVTGAAQGIGRAVARHLLQAGATVIALDLPFVLLLEYGDPLRLTPLDVADA-------- 52
Query: 79 DLSSLKSVRKCAQEILDNESAIHLLINNAGV--MMCPRQLTEDGYELQFATNHLGHYLFT 136
+VR+ +L I L+N AGV L+ + +E FA N G +F
Sbjct: 53 -----AAVREVCSRLLAEHGPIDALVNCAGVLRPGATDPLSTEDWEQTFAVNVTG--VFN 105
Query: 137 LL--LLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFT 194
LL + P + I+ ++S A H I++ AYG SK A +
Sbjct: 106 LLQAVAPHMKDRRTGAIVTVASNA-------AHVPRISM-------AAYGASKAALASLS 151
Query: 195 TELAKRL 201
L L
Sbjct: 152 KCLGLEL 158
|
2,3 dihydro-2,3 dihydrozybenzoate dehydrogenase shares the characteristics of the classical SDRs. This subgroup includes Escherichai coli EntA which catalyzes the NAD+-dependent oxidation of 2,3-dihydro-2,3-dihydroxybenzoate to 2,3-dihydroxybenzoate during biosynthesis of the siderophore Enterobactin. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 244 |
| >gnl|CDD|180300 PRK05875, PRK05875, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 2e-05
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
+T +VTG +GIGK A L GA V++ R+ +K AA++I K AG V
Sbjct: 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEAL----KGAGAV 60
|
Length = 276 |
| >gnl|CDD|187582 cd05274, KR_FAS_SDR_x, ketoreductase (KR) and fatty acid synthase (FAS), complex (x) SDRs | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 3e-05
Identities = 34/159 (21%), Positives = 55/159 (34%), Gaps = 16/159 (10%)
Query: 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGAR-VIMACRSLEKAETAADDIRTSLKDV 67
A T ++TG G+G A LA RGAR +++ R AA
Sbjct: 143 AAAPGGLDGTYLITGGLGGLGLLVARWLAARGARHLVLLSRRGPAPRAAARAALLRAG-- 200
Query: 68 KDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV----MMCPRQLTEDGYEL 123
V + + D++ ++ E L + +I+ AGV ++ +LT +
Sbjct: 201 --GARVSVVRCDVTDPAALAALLAE-LAAGGPLAGVIHAAGVLRDALL--AELTPAAFAA 255
Query: 124 QFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWG 162
A G L L + SS+A G
Sbjct: 256 VLAAKVAG----ALNLHELTPDLPLDFFVLFSSVAALLG 290
|
Ketoreductase, a module of the multidomain polyketide synthase (PKS), has 2 subdomains, each corresponding to a SDR family monomer. The C-terminal subdomain catalyzes the NADPH-dependent reduction of the beta-carbonyl of a polyketide to a hydroxyl group, a step in the biosynthesis of polyketides, such as erythromycin. The N-terminal subdomain, an interdomain linker, is a truncated Rossmann fold which acts to stabilizes the catalytic subdomain. Unlike typical SDRs, the isolated domain does not oligomerize but is composed of 2 subdomains, each resembling an SDR monomer. The active site resembles that of typical SDRs, except that the usual positions of the catalytic Asn and Tyr are swapped, so that the canonical YXXXK motif changes to YXXXN. Modular PKSs are multifunctional structures in which the makeup recapitulates that found in (and may have evolved from) FAS. In some instances, such as porcine FAS, an enoyl reductase (ER) module is inserted between the sub-domains. Fatty acid synthesis occurs via the stepwise elongation of a chain (which is attached to acyl carrier protein, ACP) with 2-carbon units. Eukaryotic systems consist of large, multifunctional synthases (type I) while bacterial, type II systems, use single function proteins. Fungal fatty acid synthase uses a dodecamer of 6 alpha and 6 beta subunits. In mammalian type FAS cycles, ketoacyl synthase forms acetoacetyl-ACP which is reduced by the NADP-dependent beta-KR, forming beta-hydroxyacyl-ACP, which is in turn dehydrated by dehydratase to a beta-enoyl intermediate, which is reduced by NADP-dependent beta-ER. Polyketide synthesis also proceeds via the addition of 2-carbon units as in fatty acid synthesis. The complex SDR NADP-binding motif, GGXGXXG, is often present, but is not strictly conserved in each instance of the module. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 375 |
| >gnl|CDD|169556 PRK08703, PRK08703, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 3e-05
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDI 60
L KT +VTG++ G+G+ A A GA VI+ R +K E D I
Sbjct: 4 LSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAI 50
|
Length = 239 |
| >gnl|CDD|187636 cd08931, SDR_c9, classical (c) SDR, subgroup 9 | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 3e-05
Identities = 35/153 (22%), Positives = 55/153 (35%), Gaps = 19/153 (12%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTS-LKDVK---DAGE 72
K +TG+ +GIG+ TA A+ G V DI L + A
Sbjct: 1 KAIFITGAASGIGRETALLFARNGWFV------------GLYDIDEDGLAALAAELGAEN 48
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESA-IHLLINNAGVMMCPR--QLTEDGYELQFATNH 129
VV LD++ + + + L NNAGV + ++ N
Sbjct: 49 VVAGALDVTDRAAWAAALADFAAATGGRLDALFNNAGVGRGGPFEDVPLAAHDRMVDINV 108
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLAHTWG 162
G LP + + AR+IN +S + +G
Sbjct: 109 KGVLNGAYAALPYLKATPGARVINTASSSAIYG 141
|
This subgroup has the canonical active site tetrad and NAD-binding motif of the classical SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 227 |
| >gnl|CDD|180413 PRK06128, PRK06128, oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 4e-05
Identities = 43/196 (21%), Positives = 80/196 (40%), Gaps = 31/196 (15%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RL G+ A++TG+++GIG+ TA A+ GA + + E+ D ++ ++ G
Sbjct: 52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQ-----DAAEVVQLIQAEGR 106
Query: 73 VVIR-QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR---QLTEDGYELQFATN 128
+ DL R+ + + + +L+N AG + +T + ++ F TN
Sbjct: 107 KAVALPGDLKDEAFCRQLVERAVKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTN 166
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGA---YGR 185
+ +P + A IIN S+ + Y + Y
Sbjct: 167 VYAMFWLCKAAIPHL--PPGASIINTGSI-----------------QSYQPSPTLLDYAS 207
Query: 186 SKLANILFTTELAKRL 201
+K A + FT LAK++
Sbjct: 208 TKAAIVAFTKALAKQV 223
|
Length = 300 |
| >gnl|CDD|235608 PRK05786, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 5e-05
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RL GK + G + G+G A K GA+V + R+ K + ++ +L G
Sbjct: 2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLK----RMKKTLSKY---GN 54
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAG 108
+ D+SS +S R ++ +AI L+ G
Sbjct: 55 IHYVVGDVSSTESARNVIEKAAKVLNAIDGLVVTVG 90
|
Length = 238 |
| >gnl|CDD|182051 PRK09730, PRK09730, putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 6e-05
Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 11/152 (7%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
A+VTG + GIG+ TA LA+ G V + + ++ AA ++ + + G+ +
Sbjct: 2 AIALVTGGSRGIGRATALLLAQEGYTVAV---NYQQNLHAAQEVVNLI--TQAGGKAFVL 56
Query: 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMM---CPRQLTEDGYELQFATNHLGHY 133
Q D+S V I ++ + L+NNAG++ LT + +TN G++
Sbjct: 57 QADISDENQVVAMFTAIDQHDEPLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYF 116
Query: 134 LFTLLLLPRIIKSAPAR---IINLSSLAHTWG 162
L + R+ I+N+SS A G
Sbjct: 117 LCCREAVKRMALKHGGSGGAIVNVSSAASRLG 148
|
Length = 247 |
| >gnl|CDD|168186 PRK05693, PRK05693, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 7e-05
Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 19/146 (13%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
++TG ++GIG+ A+ G V R E E A A
Sbjct: 2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALA------------AAGFTAV 49
Query: 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-MMCPRQLTEDGYEL---QFATNHLGH 132
QLD++ ++ + A+E+ + +LINNAG M P L + G E QF TN
Sbjct: 50 QLDVNDGAALARLAEELEAEHGGLDVLINNAGYGAMGP--LLDGGVEAMRRQFETNVFAV 107
Query: 133 YLFTLLLLPRIIKSAPARIINLSSLA 158
T L P +++ + ++N+ S++
Sbjct: 108 VGVTRALFP-LLRRSRGLVVNIGSVS 132
|
Length = 274 |
| >gnl|CDD|132368 TIGR03325, BphB_TodD, cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 7e-05
Identities = 36/151 (23%), Positives = 65/151 (43%), Gaps = 16/151 (10%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RL G+ +VTG +G+G+ + GARV + L+K+ ++ + D
Sbjct: 2 RLKGEVVLVTGGASGLGRAIVDRFVAEGARVAV----LDKSAAGLQELEAAHGD-----A 52
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-------MMCPRQLTEDGYELQF 125
VV + D+ SL ++ + I LI NAG+ + P ++ ++ F
Sbjct: 53 VVGVEGDVRSLDDHKEAVARCVAAFGKIDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVF 112
Query: 126 ATNHLGHYLFTLLLLPRIIKSAPARIINLSS 156
N G+ L LP ++ S + I +S+
Sbjct: 113 HINVKGYLLAVKAALPALVASRGSVIFTISN 143
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. Length = 262 |
| >gnl|CDD|177895 PLN02253, PLN02253, xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 7e-05
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RL GK A+VTG TGIG+ K GA+V + + + ++ SL +
Sbjct: 15 RLLGKVALVTGGATGIGESIVRLFHKHGAKVCIV----DLQDDLGQNVCDSLGGEPNVCF 70
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV 109
D++ V + +D + +++NNAG+
Sbjct: 71 F---HCDVTVEDDVSRAVDFTVDKFGTLDIMVNNAGL 104
|
Length = 280 |
| >gnl|CDD|236173 PRK08177, PRK08177, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 13/94 (13%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
+TA++ G++ G+G + L +RG +V R ++ +L+ + V I
Sbjct: 2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDT--------ALQAL---PGVHIE 50
Query: 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM 110
+LD++ S+ + Q + LL NAG+
Sbjct: 51 KLDMNDPASLDQLLQRL--QGQRFDLLFVNAGIS 82
|
Length = 225 |
| >gnl|CDD|187589 cd05328, 3alpha_HSD_SDR_c, alpha hydroxysteroid dehydrogenase (3alpha_HSD), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 1e-04
Identities = 36/142 (25%), Positives = 53/142 (37%), Gaps = 30/142 (21%)
Query: 18 TAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQ 77
T ++TG+ +GIG TA L G VI D+R +V
Sbjct: 1 TIVITGAASGIGAATAELLEDAGHTVI------------GIDLRE--------ADV---I 37
Query: 78 LDLSSLKSVRKCAQEILDNES-AIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFT 136
DLS+ + ++L S + L+N AGV L N+ G
Sbjct: 38 ADLSTPEGRAAAIADVLARCSGVLDGLVNCAGV---GGTT---VAGLVLKVNYFGLRALM 91
Query: 137 LLLLPRIIKSAPARIINLSSLA 158
LLPR+ K + +SS+A
Sbjct: 92 EALLPRLRKGHGPAAVVVSSIA 113
|
Bacterial 3-alpha_HSD, which catalyzes the NAD-dependent oxidoreduction of hydroxysteroids, is a dimeric member of the classical SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|187633 cd08928, KR_fFAS_like_SDR_c_like, ketoacyl reductase (KR) domain of fungal-type fatty acid synthase (fFAS)-like, classical (c)-like SDRs | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 1e-04
Identities = 34/195 (17%), Positives = 60/195 (30%), Gaps = 23/195 (11%)
Query: 19 AIVTGSNTG-IGKCTANELAKRGARVIMACRSLEKAETA-ADDIRTSLKDVKDAGEVVIR 76
++TG+ G IG L GA+V + + T DI + +++
Sbjct: 1 VLITGAGDGSIGAEVLQGLLNGGAKVYVTTSRFSRQVTKYYQDIYAACG--AAGSVLIVV 58
Query: 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCP-RQLTEDGYELQF--ATNHLGHY 133
+ S + V A I D + + + P + E G E+ + + + H
Sbjct: 59 PFNQGSKQDVEALAIGIYDTVNG----LGWDLDLYGPFAAIPETGIEIPAIDSKSEVAHR 114
Query: 134 LFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDI----NLEKGYSATGAYGRSKLA 189
+ LL P ++ + + I + GAY SKL
Sbjct: 115 IMLTNLL------RPKGLVKIQKQLRGQETRPA--QVILPFSPNHGTFGDDGAYSESKLH 166
Query: 190 NILFTTELAKRLQVN 204
A N
Sbjct: 167 LETLFNRWASESWGN 181
|
KR domain of FAS, including the fungal-type multidomain FAS alpha chain, and the single domain daunorubicin C-13 ketoreductase. Fungal-type FAS is a heterododecameric FAS composed of alpha and beta multifunctional polypeptide chains. The KR, an SDR family member is located centrally in the alpha chain. KR catalyzes the NADP-dependent reduction of ketoacyl-ACP to hydroxyacyl-ACP. KR shares the critical active site Tyr of the classical SDR and has partial identity of the active site tetrad, but the upstream Asn is replaced in KR by Met. As in other SDRs, there is a glycine rich NAD(P)-binding motif, but the pattern found in KR does not match the classical SDRs, and is not strictly conserved within this group. Daunorubicin is a clinically important therapeutic compound used in some cancer treatments. Single domain daunorubicin C-13 ketoreductase is member of the classical SDR family with a canonical glycine-rich NAD(P)-binding motif, but lacking a complete match to the active site tetrad characteristic of this group. The critical Tyr, plus the Lys and upstream Asn are present, but the catalytic Ser is replaced, generally by Gln. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 248 |
| >gnl|CDD|171531 PRK12481, PRK12481, 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 1e-04
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L+GK AI+TG NTG+G+ A LAK GA ++ A + + ++ +
Sbjct: 6 LNGKVAIITGCNTGLGQGMAIGLAKAGADIVGV------GVAEAPETQAQVEALGRKFHF 59
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM 110
+ DL K + + ++ I +LINNAG++
Sbjct: 60 ITA--DLIQQKDIDSIVSQAVEVMGHIDILINNAGII 94
|
Length = 251 |
| >gnl|CDD|180838 PRK07102, PRK07102, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 2e-04
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVI 75
K ++ G+ + I + A A GAR+ +A R +E+ E ADD+R + A V
Sbjct: 1 MKKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLR-----ARGAVAVST 55
Query: 76 RQLDLSSLKS 85
+LD+ S
Sbjct: 56 HELDILDTAS 65
|
Length = 243 |
| >gnl|CDD|181188 PRK07985, PRK07985, oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 2e-04
Identities = 43/149 (28%), Positives = 67/149 (44%), Gaps = 11/149 (7%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG- 71
RL + A+VTG ++GIG+ A A+ GA V A L E A D++ K +++ G
Sbjct: 46 RLKDRKALVTGGDSGIGRAAAIAYAREGADV--AISYLPVEEEDAQDVK---KIIEECGR 100
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQ---LTEDGYELQFATN 128
+ V+ DLS K R E + ++ AG + LT + ++ FA N
Sbjct: 101 KAVLLPGDLSDEKFARSLVHEAHKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAIN 160
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSL 157
+ T +P + K A II SS+
Sbjct: 161 VFALFWLTQEAIPLLPKG--ASIITTSSI 187
|
Length = 294 |
| >gnl|CDD|169389 PRK08339, PRK08339, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 2e-04
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L GK A T S+ GIG A LA+ GA VI+ R+ E + A + I+ S +V +V
Sbjct: 6 LSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIK-SESNV----DV 60
Query: 74 VIRQLDLSSLKSVRKCAQEILD 95
DL+ + + + +E+ +
Sbjct: 61 SYIVADLTKREDLERTVKELKN 82
|
Length = 263 |
| >gnl|CDD|187641 cd08936, CR_SDR_c, Porcine peroxisomal carbonyl reductase like, classical (c) SDR | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 2e-04
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIR 61
L K A+VT S GIG A LA+ GA V+++ R + + A ++
Sbjct: 8 LANKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQQNVDRAVATLQ 55
|
This subgroup contains porcine peroxisomal carbonyl reductase and similar proteins. The porcine enzyme efficiently reduces retinals. This subgroup also includes human dehydrogenase/reductase (SDR family) member 4 (DHRS4), and human DHRS4L1. DHRS4 is a peroxisomal enzyme with 3beta-hydroxysteroid dehydrogenase activity; it catalyzes the reduction of 3-keto-C19/C21-steroids into 3beta-hydroxysteroids more efficiently than it does the retinal reduction. The human DHRS4 gene cluster contains DHRS4, DHRS4L2 and DHRS4L1. DHRS4L2 and DHRS4L1 are paralogs of DHRS4, DHRS4L2 being the most recent member. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 256 |
| >gnl|CDD|183797 PRK12859, PRK12859, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 2e-04
Identities = 35/153 (22%), Positives = 65/153 (42%), Gaps = 9/153 (5%)
Query: 13 RLDGKTAIVTGSN--TGIGKCTANELAKRGARVIMAC-----RSLEKAETAADDIRTSLK 65
+L K A+VTG + GIG ELA+ GA + + + + I+ +
Sbjct: 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEE 62
Query: 66 DVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNA--GVMMCPRQLTEDGYEL 123
+K+ +V +LDL+ + ++ ++ + H+L+NNA LT + +
Sbjct: 63 LLKNGVKVSSMELDLTQNDAPKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDK 122
Query: 124 QFATNHLGHYLFTLLLLPRIIKSAPARIINLSS 156
+ N L + K + RIIN++S
Sbjct: 123 HYMVNVRATTLLSSQFARGFDKKSGGRIINMTS 155
|
Length = 256 |
| >gnl|CDD|236389 PRK09134, PRK09134, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 3e-04
Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 9/115 (7%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARV-IMACRSLEKAETAADDIRTSLKDVKDAGEVVI 75
+ A+VTG+ IG+ A +LA G V + RS ++AE A +IR V
Sbjct: 10 RAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRAL------GRRAVA 63
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATN 128
Q DL+ VR I LL+NNA + T ++ ATN
Sbjct: 64 LQADLADEAEVRALVARASAALGPITLLVNNASLFEYDSAASFTRASWDRHMATN 118
|
Length = 258 |
| >gnl|CDD|181517 PRK08642, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMAC-RSLEKAETAADDIRTSL----KDV 67
++ +T +VTG + G+G A A+ GARV++ +S + AE AD++ DV
Sbjct: 2 QISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALADELGDRAIALQADV 61
Query: 68 KDAGEV 73
D +V
Sbjct: 62 TDREQV 67
|
Length = 253 |
| >gnl|CDD|181044 PRK07577, PRK07577, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 3e-04
Identities = 38/145 (26%), Positives = 60/145 (41%), Gaps = 22/145 (15%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
+T +VTG+ GIG + LA G +VI RS A DD GE+
Sbjct: 4 RTVLVTGATKGIGLALSLRLANLGHQVIGIARS------AIDDF---------PGELF-- 46
Query: 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTE-DGYELQ--FATNHLGHY 133
DL+ ++ +I + + ++NN G+ + P+ L + D LQ + N
Sbjct: 47 ACDLADIEQTAATLAQINE-IHPVDAIVNNVGIAL-PQPLGKIDLAALQDVYDLNVRAAV 104
Query: 134 LFTLLLLPRIIKSAPARIINLSSLA 158
T L + RI+N+ S A
Sbjct: 105 QVTQAFLEGMKLREQGRIVNICSRA 129
|
Length = 234 |
| >gnl|CDD|187583 cd05322, SDH_SDR_c_like, Sorbitol 6-phosphate dehydrogenase (SDH), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 3e-04
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVI 75
+ A+V G +G+ + LA+ G V +A + E AE AD+I K G
Sbjct: 2 NQVAVVIGGGQTLGEFLCHGLAEAGYDVAVADINSENAEKVADEINAEY-GEKAYG---- 56
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV 109
D ++ +SV ++ + + + LL+ +AG+
Sbjct: 57 FGADATNEQSVIALSKGVDEIFKRVDLLVYSAGI 90
|
Sorbitol 6-phosphate dehydrogenase (SDH, aka glucitol 6-phosphate dehydrogenase) catalyzes the NAD-dependent interconversion of D-fructose 6-phosphate to D-sorbitol 6-phosphate. SDH is a member of the classical SDRs, with the characteristic catalytic tetrad, but without a complete match to the typical NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257 |
| >gnl|CDD|171822 PRK12938, PRK12938, acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 4e-04
Identities = 45/195 (23%), Positives = 74/195 (37%), Gaps = 37/195 (18%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMAC--------RSLEKAETAADDIRTSLKDVK 68
+ A VTG GIG L K G +V+ C + LE + D S +V
Sbjct: 4 RIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVG 63
Query: 69 DAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM--MCPRQLTEDGYELQFA 126
D S + ++ I +L+NNAG+ + R++T + +
Sbjct: 64 D-------------WDSTKAAFDKVKAEVGEIDVLVNNAGITRDVVFRKMTREDWTAVID 110
Query: 127 TNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRS 186
TN + T ++ +++ RIIN+SS +N +KG Y +
Sbjct: 111 TNLTSLFNVTKQVIDGMVERGWGRIINISS--------------VNGQKGQFGQTNYSTA 156
Query: 187 KLANILFTTELAKRL 201
K FT LA+ +
Sbjct: 157 KAGIHGFTMSLAQEV 171
|
Length = 246 |
| >gnl|CDD|233441 TIGR01500, sepiapter_red, sepiapterin reductase | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 6e-04
Identities = 35/155 (22%), Positives = 65/155 (41%), Gaps = 19/155 (12%)
Query: 19 AIVTGSNTGIGKCTANELAKR----GARVIMACRSLEKAETAADDIRTSLKDVKDAGEVV 74
+VTG++ G G+ A ELAK G+ ++++ R+ E +I ++ VV
Sbjct: 3 CLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAERSGLR----VV 58
Query: 75 IRQLDLSSLKSVRKCAQEILD----NESAIHLLINNAGVMMCPRQLTEDGYELQFATNHL 130
LDL + + + + + + LLINNAG + + D + N+
Sbjct: 59 RVSLDLGAEAGLEQLLKALRELPRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYW 118
Query: 131 GHYLFTLL----LLPRIIK---SAPARIINLSSLA 158
L ++L + + K ++N+SSL
Sbjct: 119 ALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLC 153
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. Length = 256 |
| >gnl|CDD|187631 cd05373, SDR_c10, classical (c) SDR, subgroup 10 | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 7e-04
Identities = 23/91 (25%), Positives = 30/91 (32%), Gaps = 5/91 (5%)
Query: 18 TAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQ 77
A V G+ G+G A A G V +A R K E DI G
Sbjct: 1 VAAVVGAGDGLGAAIARRFAAEGFSVALAARREAKLEALLVDIIRDA-----GGSAKAVP 55
Query: 78 LDLSSLKSVRKCAQEILDNESAIHLLINNAG 108
D V I + + +L+ NAG
Sbjct: 56 TDARDEDEVIALFDLIEEEIGPLEVLVYNAG 86
|
This subgroup resembles the classical SDRs, but has an incomplete match to the canonical glycine rich NAD-binding motif and lacks the typical active site tetrad (instead of the critical active site Tyr, it has Phe, but contains the nearby Lys). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 238 |
| >gnl|CDD|236210 PRK08267, PRK08267, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 8e-04
Identities = 35/153 (22%), Positives = 61/153 (39%), Gaps = 19/153 (12%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
K+ +TG+ +GIG+ TA A G RV + A ++ AG
Sbjct: 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAEL--------GAGNAWTG 53
Query: 77 QLDLSSLKSVRKCAQEILDNESA-----IHLLINNAGVMM--CPRQLTEDGYELQFATNH 129
LD++ + L + +A + +L NNAG++ + + ++ N
Sbjct: 54 ALDVTDRAAW----DAALADFAAATGGRLDVLFNNAGILRGGPFEDIPLEAHDRVIDINV 109
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLAHTWG 162
G LP + + AR+IN SS + +G
Sbjct: 110 KGVLNGAHAALPYLKATPGARVINTSSASAIYG 142
|
Length = 260 |
| >gnl|CDD|180408 PRK06114, PRK06114, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.001
Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 9/149 (6%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
LDG+ A VTG+ +GIG+ A LA+ GA V A L D + + + ++ AG
Sbjct: 5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGADV--ALFDLR----TDDGLAETAEHIEAAGR 58
Query: 73 VVIR-QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNH 129
I+ D++S +R A+ L +N AG+ ++ E+ ++ N
Sbjct: 59 RAIQIAADVTSKADLRAAVARTEAELGALTLAVNAAGIANANPAEEMEEEQWQTVMDINL 118
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLA 158
G +L ++++ I+N++S++
Sbjct: 119 TGVFLSCQAEARAMLENGGGSIVNIASMS 147
|
Length = 254 |
| >gnl|CDD|236110 PRK07831, PRK07831, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.001
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
Query: 14 LDGKTAIVTGS-NTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L GK +VT + TGIG TA + GARV+++ + AD++ + G
Sbjct: 15 LAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELA------AELGL 68
Query: 73 VVIRQL--DLSSLKSVRKCAQEILDNESAIHLLINNAG 108
+ + D++S V ++ + +L+NNAG
Sbjct: 69 GRVEAVVCDVTSEAQVDALIDAAVERLGRLDVLVNNAG 106
|
Length = 262 |
| >gnl|CDD|180823 PRK07074, PRK07074, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.001
Identities = 31/142 (21%), Positives = 50/142 (35%), Gaps = 10/142 (7%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
+TA+VTG+ GIG+ A G RV+ AD + V
Sbjct: 3 RTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADAL--------GDARFVPV 54
Query: 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM--MCPRQLTEDGYELQFATNHLGHYL 134
DL+ S+ + +L+ NAG T + A N YL
Sbjct: 55 ACDLTDAASLAAALANAAAERGPVDVLVANAGAARAASLHDTTPASWRADNALNLEAAYL 114
Query: 135 FTLLLLPRIIKSAPARIINLSS 156
+L ++K + ++N+ S
Sbjct: 115 CVEAVLEGMLKRSRGAVVNIGS 136
|
Length = 257 |
| >gnl|CDD|181605 PRK08993, PRK08993, 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.001
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 16/101 (15%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L+GK A+VTG +TG+G+ A LA+ G I+ +E ET ++ V G
Sbjct: 8 LEGKVAVVTGCDTGLGQGMALGLAEAGCD-IVGINIVEPTET--------IEQVTALGR- 57
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESA----IHLLINNAGVM 110
R L L++ +L+ A I +L+NNAG++
Sbjct: 58 --RFLSLTADLRKIDGIPALLERAVAEFGHIDILVNNAGLI 96
|
Length = 253 |
| >gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.001
Identities = 39/198 (19%), Positives = 57/198 (28%), Gaps = 28/198 (14%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
+VTG IG L G V R + + +
Sbjct: 1 MRILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLLSGVE-------------FV 47
Query: 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFT 136
LDL+ V + A+ + D A+ L + V N G T
Sbjct: 48 VLDLTDRDLVDELAKGVPD---AVIHLAAQSSV----PDSNASDPAEFLDVNVDG----T 96
Query: 137 LLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTE 196
L LL + R + SS++ +GD D +L YG SKLA
Sbjct: 97 LNLLEAARAAGVKRFVFASSVSVVYGDPPPLPIDEDLGP-PRPLNPYGVSKLAAEQLLRA 155
Query: 197 LAKRLQVNFSRHYSCRLP 214
A+ + R
Sbjct: 156 YARLYGLPV---VILRPF 170
|
Length = 314 |
| >gnl|CDD|180766 PRK06940, PRK06940, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 11/91 (12%)
Query: 20 IVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG-EVVIRQL 78
+V G+ GIG+ A + G +V++A + E E AA +R +AG +V +++
Sbjct: 6 VVIGAG-GIGQAIARRVGA-GKKVLLADYNEENLEAAAKTLR-------EAGFDVSTQEV 56
Query: 79 DLSSLKSVRKCAQEILDNESAIHLLINNAGV 109
D+SS +SV+ A + L++ AGV
Sbjct: 57 DVSSRESVKALAATA-QTLGPVTGLVHTAGV 86
|
Length = 275 |
| >gnl|CDD|181324 PRK08251, PRK08251, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.002
Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
+ ++TG+++G+G A E A +G + + R ++ E ++ +K V +
Sbjct: 3 QKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIK----VAVA 58
Query: 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAGV 109
LD++ V + E D + +I NAG+
Sbjct: 59 ALDVNDHDQVFEVFAEFRDELGGLDRVIVNAGI 91
|
Length = 248 |
| >gnl|CDD|236116 PRK07856, PRK07856, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.003
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 16/96 (16%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRS-LEKAETAADDIRTSLKDVKDAGE 72
L G+ +VTG GIG A GA V++ R E + + + DV+D +
Sbjct: 4 LTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPETVDGRPAEFHAA--DVRDPDQ 61
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAG 108
V I++ + +L+NNAG
Sbjct: 62 -------------VAALVDAIVERHGRLDVLVNNAG 84
|
Length = 252 |
| >gnl|CDD|237189 PRK12748, PRK12748, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.003
Identities = 38/160 (23%), Positives = 57/160 (35%), Gaps = 25/160 (15%)
Query: 14 LDGKTAIVTGSN--TGIGKCTANELAKRGARVIMACRSLEKAETAADD-------IRTSL 64
L K A+VTG++ GIG LA +G + S ++ +
Sbjct: 3 LMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEI 62
Query: 65 KDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQ 124
+ E + ++DLS + + + + +LINNA T E
Sbjct: 63 ESYGVRCEHM--EIDLSQPYAPNRVFYAVSERLGDPSILINNA------AYSTHTRLEEL 114
Query: 125 FATNHLGHYLF----TLLLLPRIIKS----APARIINLSS 156
A HY T+LL K A RIINL+S
Sbjct: 115 TAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIINLTS 154
|
Length = 256 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 330 | |||
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 100.0 | |
| KOG1200|consensus | 256 | 100.0 | ||
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 100.0 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 100.0 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 100.0 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 100.0 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 100.0 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| KOG0725|consensus | 270 | 100.0 | ||
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 100.0 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 100.0 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 100.0 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 100.0 | |
| KOG1205|consensus | 282 | 100.0 | ||
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 100.0 | |
| PLN02730 | 303 | enoyl-[acyl-carrier-protein] reductase | 100.0 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 100.0 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 100.0 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 100.0 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 100.0 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 100.0 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 100.0 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 100.0 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 100.0 | |
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 100.0 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 100.0 | |
| KOG1208|consensus | 314 | 100.0 | ||
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 100.0 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 100.0 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 100.0 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 100.0 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 100.0 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 100.0 | |
| KOG1201|consensus | 300 | 100.0 | ||
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 100.0 | |
| PRK08643 | 256 | acetoin reductase; Validated | 100.0 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 100.0 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 100.0 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 100.0 | |
| PRK06300 | 299 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 100.0 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 100.0 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 100.0 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 100.0 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 100.0 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK05717 | 255 | oxidoreductase; Validated | 100.0 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 100.0 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 100.0 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 100.0 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 100.0 | |
| KOG4169|consensus | 261 | 100.0 | ||
| PRK06484 | 520 | short chain dehydrogenase; Validated | 100.0 | |
| PLN00015 | 308 | protochlorophyllide reductase | 100.0 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 100.0 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 100.0 | |
| KOG1207|consensus | 245 | 100.0 | ||
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 100.0 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 100.0 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 100.0 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 100.0 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 100.0 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 100.0 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 100.0 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 100.0 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 100.0 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 100.0 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 100.0 | |
| TIGR01831 | 239 | fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas | 100.0 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 100.0 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 100.0 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 100.0 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 100.0 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 100.0 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 100.0 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 100.0 | |
| TIGR02685 | 267 | pter_reduc_Leis pteridine reductase. Pteridine red | 100.0 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 100.0 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 100.0 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 100.0 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 100.0 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 100.0 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 100.0 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 100.0 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.98 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 99.98 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 99.98 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 99.98 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 99.98 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 99.98 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 99.98 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 99.98 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 99.97 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.97 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.97 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 99.97 | |
| KOG1611|consensus | 249 | 99.97 | ||
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 99.97 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.97 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.97 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 99.97 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 99.97 | |
| COG1028 | 251 | FabG Dehydrogenases with different specificities ( | 99.97 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.97 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 99.97 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 99.97 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 99.97 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 99.96 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 99.96 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 99.96 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 99.96 | |
| COG0623 | 259 | FabI Enoyl-[acyl-carrier-protein] | 99.96 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.96 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 99.96 | |
| KOG1014|consensus | 312 | 99.96 | ||
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 99.96 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 99.96 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 99.96 | |
| KOG1199|consensus | 260 | 99.95 | ||
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 99.95 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 99.95 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 99.95 | |
| KOG1610|consensus | 322 | 99.95 | ||
| KOG1209|consensus | 289 | 99.95 | ||
| KOG1210|consensus | 331 | 99.95 | ||
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 99.95 | |
| PRK12428 | 241 | 3-alpha-hydroxysteroid dehydrogenase; Provisional | 99.94 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 99.93 | |
| KOG1204|consensus | 253 | 99.93 | ||
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 99.91 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 99.88 | |
| smart00822 | 180 | PKS_KR This enzymatic domain is part of bacterial | 99.87 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 99.87 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 99.85 | |
| KOG1478|consensus | 341 | 99.83 | ||
| PRK13656 | 398 | trans-2-enoyl-CoA reductase; Provisional | 99.83 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 99.82 | |
| KOG1502|consensus | 327 | 99.82 | ||
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 99.81 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 99.8 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 99.78 | |
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 99.78 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 99.78 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 99.76 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 99.76 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 99.76 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 99.75 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 99.74 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 99.74 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 99.73 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 99.73 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 99.7 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 99.7 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 99.69 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 99.68 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 99.68 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 99.68 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 99.67 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 99.65 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 99.62 | |
| COG1088 | 340 | RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope | 99.62 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 99.61 | |
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 99.6 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 99.6 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 99.6 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 99.6 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 99.59 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 99.57 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 99.56 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 99.54 | |
| KOG1371|consensus | 343 | 99.54 | ||
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 99.52 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 99.51 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 99.51 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.51 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 99.47 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 99.47 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 99.46 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 99.43 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 99.41 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.4 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 99.39 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 99.39 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 99.38 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 99.36 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 99.34 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 99.34 | |
| KOG1429|consensus | 350 | 99.31 | ||
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 99.29 | |
| PLN02996 | 491 | fatty acyl-CoA reductase | 99.24 | |
| COG1089 | 345 | Gmd GDP-D-mannose dehydratase [Cell envelope bioge | 99.21 | |
| KOG4022|consensus | 236 | 99.17 | ||
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 99.15 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 99.15 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 99.13 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 99.11 | |
| KOG1430|consensus | 361 | 99.1 | ||
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 99.1 | |
| PF08643 | 299 | DUF1776: Fungal family of unknown function (DUF177 | 99.09 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 99.06 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 99.04 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 99.03 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 98.96 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 98.95 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 98.92 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 98.91 | |
| TIGR02114 | 227 | coaB_strep phosphopantothenate--cysteine ligase, s | 98.85 | |
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 98.84 | |
| KOG0747|consensus | 331 | 98.67 | ||
| COG4982 | 866 | 3-oxoacyl-[acyl-carrier protein] | 98.66 | |
| KOG1431|consensus | 315 | 98.64 | ||
| PRK12320 | 699 | hypothetical protein; Provisional | 98.59 | |
| PRK05579 | 399 | bifunctional phosphopantothenoylcysteine decarboxy | 98.53 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 98.5 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 98.45 | |
| KOG2865|consensus | 391 | 98.38 | ||
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 98.34 | |
| KOG1372|consensus | 376 | 98.31 | ||
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 98.23 | |
| TIGR00521 | 390 | coaBC_dfp phosphopantothenoylcysteine decarboxylas | 98.22 | |
| KOG1221|consensus | 467 | 98.16 | ||
| KOG1203|consensus | 411 | 98.15 | ||
| KOG1202|consensus | 2376 | 98.13 | ||
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 98.08 | |
| PRK06732 | 229 | phosphopantothenate--cysteine ligase; Validated | 98.08 | |
| PLN00106 | 323 | malate dehydrogenase | 97.99 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 97.97 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.96 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 97.96 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 97.89 | |
| KOG2733|consensus | 423 | 97.85 | ||
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.82 | |
| PRK09620 | 229 | hypothetical protein; Provisional | 97.79 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 97.59 | |
| KOG2774|consensus | 366 | 97.5 | ||
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 97.44 | |
| KOG4039|consensus | 238 | 97.37 | ||
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 97.32 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 97.22 | |
| PF04127 | 185 | DFP: DNA / pantothenate metabolism flavoprotein; I | 97.21 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 97.19 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.17 | |
| cd08253 | 325 | zeta_crystallin Zeta-crystallin with NADP-dependen | 97.14 | |
| cd08266 | 342 | Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam | 97.13 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 97.1 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 97.1 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 97.01 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 97.0 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 96.98 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 96.98 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 96.95 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 96.94 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 96.89 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 96.87 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 96.82 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 96.81 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 96.77 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 96.76 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 96.76 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 96.75 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 96.72 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 96.71 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 96.68 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 96.65 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 96.64 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 96.6 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 96.6 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 96.59 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 96.58 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 96.56 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 96.53 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 96.53 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 96.52 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 96.51 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 96.51 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 96.49 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 96.48 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 96.43 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 96.39 | |
| cd05276 | 323 | p53_inducible_oxidoreductase PIG3 p53-inducible qu | 96.37 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 96.36 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 96.29 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 96.27 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 96.22 | |
| cd08259 | 332 | Zn_ADH5 Alcohol dehydrogenases of the MDR family. | 96.21 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 96.15 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 96.12 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 96.11 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 96.11 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 96.07 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 96.06 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 96.05 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 95.97 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 95.97 | |
| PRK08223 | 287 | hypothetical protein; Validated | 95.95 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 95.95 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 95.91 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 95.9 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 95.87 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 95.85 | |
| KOG1198|consensus | 347 | 95.83 | ||
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 95.82 | |
| PRK13982 | 475 | bifunctional SbtC-like/phosphopantothenoylcysteine | 95.8 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 95.79 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 95.78 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.72 | |
| PF12242 | 78 | Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2 | 95.67 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 95.66 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 95.66 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 95.63 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.62 | |
| COG3007 | 398 | Uncharacterized paraquat-inducible protein B [Func | 95.61 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 95.59 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 95.59 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 95.56 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 95.55 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 95.53 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 95.49 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 95.47 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 95.46 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 95.46 | |
| TIGR02824 | 325 | quinone_pig3 putative NAD(P)H quinone oxidoreducta | 95.4 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 95.4 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 95.36 | |
| PLN02602 | 350 | lactate dehydrogenase | 95.34 | |
| cd05288 | 329 | PGDH Prostaglandin dehydrogenases. Prostaglandins | 95.32 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 95.28 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 95.28 | |
| PLN02928 | 347 | oxidoreductase family protein | 95.26 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 95.26 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 95.23 | |
| cd08268 | 328 | MDR2 Medium chain dehydrogenases/reductase (MDR)/z | 95.14 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 95.05 | |
| PRK07411 | 390 | hypothetical protein; Validated | 95.02 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 94.98 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 94.97 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 94.96 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 94.93 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 94.89 | |
| TIGR01381 | 664 | E1_like_apg7 E1-like protein-activating enzyme Gsa | 94.89 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.86 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 94.85 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 94.79 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 94.75 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 94.66 | |
| cd08244 | 324 | MDR_enoyl_red Possible enoyl reductase. Member ide | 94.58 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 94.58 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 94.56 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 94.55 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 94.46 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 94.45 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 94.45 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 94.43 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 94.38 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.36 | |
| cd01488 | 291 | Uba3_RUB Ubiquitin activating enzyme (E1) subunit | 94.36 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 94.33 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 94.31 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 94.3 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 94.26 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 94.26 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 94.24 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.2 | |
| KOG0023|consensus | 360 | 94.19 | ||
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 94.16 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 94.13 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.12 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 94.12 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 94.12 | |
| cd08250 | 329 | Mgc45594_like Mgc45594 gene product and other MDR | 94.08 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 94.06 | |
| KOG2013|consensus | 603 | 94.05 | ||
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 94.02 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 93.98 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 93.97 | |
| cd08292 | 324 | ETR_like_2 2-enoyl thioester reductase (ETR) like | 93.97 | |
| cd05286 | 320 | QOR2 Quinone oxidoreductase (QOR). Quinone oxidore | 93.97 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 93.93 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 93.92 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 93.89 | |
| cd08243 | 320 | quinone_oxidoreductase_like_1 Quinone oxidoreducta | 93.89 | |
| cd08241 | 323 | QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t | 93.89 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 93.84 | |
| PTZ00354 | 334 | alcohol dehydrogenase; Provisional | 93.79 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 93.75 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 93.73 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 93.69 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 93.64 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 93.56 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 93.56 | |
| COG5322 | 351 | Predicted dehydrogenase [General function predicti | 93.52 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 93.46 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.36 | |
| KOG0069|consensus | 336 | 93.35 | ||
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 93.34 | |
| cd05282 | 323 | ETR_like 2-enoyl thioester reductase-like. 2-enoyl | 93.34 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 93.29 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 93.29 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 93.28 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.28 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 93.21 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 93.2 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.17 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 93.16 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 93.12 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 93.08 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 93.07 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 93.05 | |
| KOG0024|consensus | 354 | 93.03 | ||
| PRK13771 | 334 | putative alcohol dehydrogenase; Provisional | 93.03 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 93.01 | |
| cd08246 | 393 | crotonyl_coA_red crotonyl-CoA reductase. Crotonyl- | 92.96 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.92 | |
| cd08248 | 350 | RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu | 92.86 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.86 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 92.83 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 92.81 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.8 |
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=305.71 Aligned_cols=240 Identities=20% Similarity=0.195 Sum_probs=202.3
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
++|+||++|||||++|||++++++|+++|++|++++|+.+++++..+++.+. .+.++.++.+|++++++++++++
T Consensus 4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~~~~~i~~~~~ 78 (263)
T PRK08339 4 IDLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSE-----SNVDVSYIVADLTKREDLERTVK 78 (263)
T ss_pred cCCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhh-----cCCceEEEEecCCCHHHHHHHHH
Confidence 4689999999999999999999999999999999999998888877777543 24578899999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 92 EILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
++. .++++|++|||||...+ ..+.+.++|++++++|+.+++.++++++|.|.+++.|+||++||.++..+.
T Consensus 79 ~~~-~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~g~Ii~isS~~~~~~~------ 151 (263)
T PRK08339 79 ELK-NIGEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFGRIIYSTSVAIKEPI------ 151 (263)
T ss_pred HHH-hhCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcCccccCCC------
Confidence 986 58999999999997643 257889999999999999999999999999988878999999999876653
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
+....|+++|+|+++|++++|+|++
T Consensus 152 --------~~~~~y~asKaal~~l~~~la~el~----------------------------------------------- 176 (263)
T PRK08339 152 --------PNIALSNVVRISMAGLVRTLAKELG----------------------------------------------- 176 (263)
T ss_pred --------CcchhhHHHHHHHHHHHHHHHHHhc-----------------------------------------------
Confidence 6778899999999999999999999
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCC---------chhhHHHH--HHhhhhhccChHHHHHHHHHhhcccccccc
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSI---------IPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERE 318 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~---------~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~ 318 (330)
+ .|||||+|+||+|+|++....... ....+... .++++ +.+|+|+|++++||+++ .++++
T Consensus 177 ---~---~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r--~~~p~dva~~v~fL~s~-~~~~i 247 (263)
T PRK08339 177 ---P---KGITVNGIMPGIIRTDRVIQLAQDRAKREGKSVEEALQEYAKPIPLGR--LGEPEEIGYLVAFLASD-LGSYI 247 (263)
T ss_pred ---c---cCeEEEEEEeCcCccHHHHHHHHhhhhccCCCHHHHHHHHhccCCccc--CcCHHHHHHHHHHHhcc-hhcCc
Confidence 6 899999999999999986532110 11111111 23444 89999999999999966 56799
Q ss_pred CceecccCC
Q psy13409 319 TGLYYAKAD 327 (330)
Q Consensus 319 ~G~~~~~~~ 327 (330)
||+.+...+
T Consensus 248 tG~~~~vdg 256 (263)
T PRK08339 248 NGAMIPVDG 256 (263)
T ss_pred cCceEEECC
Confidence 999886543
|
|
| >KOG1200|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=292.34 Aligned_cols=234 Identities=27% Similarity=0.337 Sum_probs=207.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
+++.|.++||||++|||++++..|+++|++|.+++++....++++..+.. ..+-..+.||++++++++.++++
T Consensus 11 r~~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g-------~~~h~aF~~DVS~a~~v~~~l~e 83 (256)
T KOG1200|consen 11 RLMSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGG-------YGDHSAFSCDVSKAHDVQNTLEE 83 (256)
T ss_pred HHhcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCC-------CCccceeeeccCcHHHHHHHHHH
Confidence 57889999999999999999999999999999999999988888877643 24556899999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC--CCeEEEEcCCCcccCCCCCcc
Q psy13409 93 ILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA--PARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~--~g~IV~iSS~~~~~~~~~~~~ 168 (330)
..+.+|+++++|||||+.... -.+..++|+..+.+|+.|.|+++|++.+.|..++ +.+||++||+.|..|+
T Consensus 84 ~~k~~g~psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIVGkiGN----- 158 (256)
T KOG1200|consen 84 MEKSLGTPSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIVGKIGN----- 158 (256)
T ss_pred HHHhcCCCcEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhhccccc-----
Confidence 999999999999999998754 5789999999999999999999999999865544 4599999999999997
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
.++..|+++|+++++|++++|+|++
T Consensus 159 ---------~GQtnYAAsK~GvIgftktaArEla---------------------------------------------- 183 (256)
T KOG1200|consen 159 ---------FGQTNYAASKGGVIGFTKTAARELA---------------------------------------------- 183 (256)
T ss_pred ---------ccchhhhhhcCceeeeeHHHHHHHh----------------------------------------------
Confidence 7889999999999999999999999
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCceeccc
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAK 325 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~ 325 (330)
+ ++||||+|+||||.|||....++.. ..... .|+++ ++.+||+|..|+||+++ .++|+||..+.-
T Consensus 184 ----~---knIrvN~VlPGFI~tpMT~~mp~~v--~~ki~~~iPmgr--~G~~EevA~~V~fLAS~-~ssYiTG~t~ev 250 (256)
T KOG1200|consen 184 ----R---KNIRVNVVLPGFIATPMTEAMPPKV--LDKILGMIPMGR--LGEAEEVANLVLFLASD-ASSYITGTTLEV 250 (256)
T ss_pred ----h---cCceEeEeccccccChhhhhcCHHH--HHHHHccCCccc--cCCHHHHHHHHHHHhcc-ccccccceeEEE
Confidence 6 8999999999999999999887543 22333 46666 99999999999999955 788999998764
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=290.30 Aligned_cols=228 Identities=29% Similarity=0.402 Sum_probs=199.7
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
..+++|+++|||||+|||.++|+.|++.|++|++++|+.++++++.+++. .+.+.++..|++|.++++++++
T Consensus 2 ~~~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~--------~~~~~~~~~DVtD~~~~~~~i~ 73 (246)
T COG4221 2 TTLKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIG--------AGAALALALDVTDRAAVEAAIE 73 (246)
T ss_pred CCCCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhc--------cCceEEEeeccCCHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999988873 2578999999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 92 EILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
.+.+.++++|+||||||.... ..+.+.++|++++++|+.|.++.+++++|.|.+++.|.||++||++|.++.
T Consensus 74 ~~~~~~g~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG~~~y------ 147 (246)
T COG4221 74 ALPEEFGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIAGRYPY------ 147 (246)
T ss_pred HHHHhhCcccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEeccccccccC------
Confidence 999999999999999998764 368899999999999999999999999999999999999999999998884
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
++.+.|+++|+++..|...|.+|+.
T Consensus 148 --------~~~~vY~ATK~aV~~fs~~LR~e~~----------------------------------------------- 172 (246)
T COG4221 148 --------PGGAVYGATKAAVRAFSLGLRQELA----------------------------------------------- 172 (246)
T ss_pred --------CCCccchhhHHHHHHHHHHHHHHhc-----------------------------------------------
Confidence 8889999999999999999999998
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccc
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKC 315 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~ 315 (330)
+ ++|||.+|+||.|.|........... .+++..-.....+.+|+|+|++|+|.++.|..
T Consensus 173 ---g---~~IRVt~I~PG~v~~~~~s~v~~~g~-~~~~~~~y~~~~~l~p~dIA~~V~~~~~~P~~ 231 (246)
T COG4221 173 ---G---TGIRVTVISPGLVETTEFSTVRFEGD-DERADKVYKGGTALTPEDIAEAVLFAATQPQH 231 (246)
T ss_pred ---C---CCeeEEEecCceecceecccccCCch-hhhHHHHhccCCCCCHHHHHHHHHHHHhCCCc
Confidence 7 89999999999997776555443321 22222222222378999999999999988764
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=299.33 Aligned_cols=233 Identities=17% Similarity=0.123 Sum_probs=193.0
Q ss_pred CCCCCEEEEEcCC--CchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSN--TGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 13 ~~~gk~aLITGas--~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.++||+++||||+ +|||++++++|+++|++|++++|+. +..+..+++. ..++.++.||+++++++++++
T Consensus 4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~-~~~~~~~~~~--------~~~~~~~~~Dl~~~~~v~~~~ 74 (252)
T PRK06079 4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND-RMKKSLQKLV--------DEEDLLVECDVASDESIERAF 74 (252)
T ss_pred ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch-HHHHHHHhhc--------cCceeEEeCCCCCHHHHHHHH
Confidence 4789999999999 8999999999999999999999984 3333333331 246788999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCC------CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCC
Q psy13409 91 QEILDNESAIHLLINNAGVMM------CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDG 164 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~------~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~ 164 (330)
+++.+.++++|++|||||... +..+.+.++|+..+++|+.+++.+++.++|+|.+ +|+||++||.++..+.
T Consensus 75 ~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~--~g~Iv~iss~~~~~~~- 151 (252)
T PRK06079 75 ATIKERVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNP--GASIVTLTYFGSERAI- 151 (252)
T ss_pred HHHHHHhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhccc--CceEEEEeccCccccC-
Confidence 999999999999999999764 2357788999999999999999999999999864 4899999998876653
Q ss_pred CCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccc
Q psy13409 165 SMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYC 244 (330)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
+.+.+|++||+|+++|+++||.|++
T Consensus 152 -------------~~~~~Y~asKaal~~l~~~la~el~------------------------------------------ 176 (252)
T PRK06079 152 -------------PNYNVMGIAKAALESSVRYLARDLG------------------------------------------ 176 (252)
T ss_pred -------------CcchhhHHHHHHHHHHHHHHHHHhh------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred cccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCcee
Q psy13409 245 KNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLY 322 (330)
Q Consensus 245 ~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~ 322 (330)
+ +||+||+|+||+|+|++...........+... .+.++ +.+|+|+|++++||+++ .++++||+.
T Consensus 177 --------~---~gI~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r--~~~pedva~~~~~l~s~-~~~~itG~~ 242 (252)
T PRK06079 177 --------K---KGIRVNAISAGAVKTLAVTGIKGHKDLLKESDSRTVDGV--GVTIEEVGNTAAFLLSD-LSTGVTGDI 242 (252)
T ss_pred --------h---cCcEEEEEecCcccccccccCCChHHHHHHHHhcCcccC--CCCHHHHHHHHHHHhCc-ccccccccE
Confidence 6 89999999999999998654422211122222 23344 89999999999999965 578999998
Q ss_pred cccC
Q psy13409 323 YAKA 326 (330)
Q Consensus 323 ~~~~ 326 (330)
+.-.
T Consensus 243 i~vd 246 (252)
T PRK06079 243 IYVD 246 (252)
T ss_pred EEeC
Confidence 8644
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=302.34 Aligned_cols=235 Identities=13% Similarity=0.088 Sum_probs=191.7
Q ss_pred CCCCCEEEEEcCCC--chHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNT--GIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 13 ~~~gk~aLITGas~--gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.|+||++|||||++ |||+++|++|+++|++|++++|+....++ .+++.+. .+ ...++.+|++|.+++++++
T Consensus 4 ~l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~-~~~~~~~-----~g-~~~~~~~Dv~d~~~v~~~~ 76 (271)
T PRK06505 4 LMQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKR-VKPLAES-----LG-SDFVLPCDVEDIASVDAVF 76 (271)
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHH-HHHHHHh-----cC-CceEEeCCCCCHHHHHHHH
Confidence 47899999999996 99999999999999999999998643333 3333322 12 2357899999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCC------CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCC
Q psy13409 91 QEILDNESAIHLLINNAGVMMC------PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDG 164 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~------~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~ 164 (330)
+++.+.++++|++|||||+... ..+.+.++|++++++|+.+++.++++++|+|.+ +|+||++||.++..+.
T Consensus 77 ~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~--~G~Iv~isS~~~~~~~- 153 (271)
T PRK06505 77 EALEKKWGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPD--GGSMLTLTYGGSTRVM- 153 (271)
T ss_pred HHHHHHhCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhcc--CceEEEEcCCCccccC-
Confidence 9999999999999999997642 246788999999999999999999999999973 4899999998876653
Q ss_pred CCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccc
Q psy13409 165 SMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYC 244 (330)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
+.+.+|++||+|+.+|+++||.|++
T Consensus 154 -------------~~~~~Y~asKaAl~~l~r~la~el~------------------------------------------ 178 (271)
T PRK06505 154 -------------PNYNVMGVAKAALEASVRYLAADYG------------------------------------------ 178 (271)
T ss_pred -------------CccchhhhhHHHHHHHHHHHHHHHh------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred cccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCcee
Q psy13409 245 KNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLY 322 (330)
Q Consensus 245 ~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~ 322 (330)
+ .|||||+|+||+|+|++...........++.. .++++ +.+|+|+|++++||+++ .++++||+.
T Consensus 179 --------~---~gIrVn~v~PG~i~T~~~~~~~~~~~~~~~~~~~~p~~r--~~~peeva~~~~fL~s~-~~~~itG~~ 244 (271)
T PRK06505 179 --------P---QGIRVNAISAGPVRTLAGAGIGDARAIFSYQQRNSPLRR--TVTIDEVGGSALYLLSD-LSSGVTGEI 244 (271)
T ss_pred --------h---cCeEEEEEecCCccccccccCcchHHHHHHHhhcCCccc--cCCHHHHHHHHHHHhCc-cccccCceE
Confidence 6 79999999999999998654322111112221 24444 78999999999999965 567999998
Q ss_pred cccC
Q psy13409 323 YAKA 326 (330)
Q Consensus 323 ~~~~ 326 (330)
+.-.
T Consensus 245 i~vd 248 (271)
T PRK06505 245 HFVD 248 (271)
T ss_pred Eeec
Confidence 7643
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=297.33 Aligned_cols=237 Identities=22% Similarity=0.290 Sum_probs=197.3
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
++++||+++||||++|||++++++|+++|++|++++|+.. ++..+.++. .+.++.++.+|++++++++++++
T Consensus 4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~------~~~~~~~~~~Dl~~~~~~~~~~~ 75 (251)
T PRK12481 4 FDLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEA------LGRKFHFITADLIQQKDIDSIVS 75 (251)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHH------cCCeEEEEEeCCCCHHHHHHHHH
Confidence 5689999999999999999999999999999999988643 333344433 25678899999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCCcc
Q psy13409 92 EILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~~~ 168 (330)
++.+.++++|++|||||.... ..+.+.++|++++++|+.+++.+++.+++.|.+++ +|+||++||..+..+.
T Consensus 76 ~~~~~~g~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~----- 150 (251)
T PRK12481 76 QAVEVMGHIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQGG----- 150 (251)
T ss_pred HHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcCCC-----
Confidence 999999999999999998653 25678899999999999999999999999998765 5899999999887664
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
+....|++||+|+++|++++|.|++
T Consensus 151 ---------~~~~~Y~asK~a~~~l~~~la~e~~---------------------------------------------- 175 (251)
T PRK12481 151 ---------IRVPSYTASKSAVMGLTRALATELS---------------------------------------------- 175 (251)
T ss_pred ---------CCCcchHHHHHHHHHHHHHHHHHHh----------------------------------------------
Confidence 5667899999999999999999998
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+ .|||||+|+||+|+|++...........+... .+.++ +.+|+|+|++++||+++ .++++||+.+...
T Consensus 176 ----~---~girvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~~~--~~~peeva~~~~~L~s~-~~~~~~G~~i~vd 245 (251)
T PRK12481 176 ----Q---YNINVNAIAPGYMATDNTAALRADTARNEAILERIPASR--WGTPDDLAGPAIFLSSS-ASDYVTGYTLAVD 245 (251)
T ss_pred ----h---cCeEEEEEecCCCccCchhhcccChHHHHHHHhcCCCCC--CcCHHHHHHHHHHHhCc-cccCcCCceEEEC
Confidence 6 79999999999999998765432211111122 23444 88999999999999965 5679999987643
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-39 Score=293.34 Aligned_cols=241 Identities=24% Similarity=0.334 Sum_probs=203.6
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
+++++|+++||||++|||++++++|+++|++|++++|+.++++++.++++.. +.++.++.+|++++++++++++
T Consensus 2 ~~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~ 75 (254)
T PRK07478 2 MRLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAE------GGEAVALAGDVRDEAYAKALVA 75 (254)
T ss_pred CCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEcCCCCHHHHHHHHH
Confidence 4688999999999999999999999999999999999998888887777653 4678899999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCC---CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcc-cCCCCCc
Q psy13409 92 EILDNESAIHLLINNAGVMMC---PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHT-WGDGSMH 167 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~---~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~-~~~~~~~ 167 (330)
++.+.++++|++|||||...+ ..+.+.+++++++++|+.+++.+++.++|.|.+.+.++||++||..+. .+
T Consensus 76 ~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~~~iv~~sS~~~~~~~----- 150 (254)
T PRK07478 76 LAVERFGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGGGSLIFTSTFVGHTAG----- 150 (254)
T ss_pred HHHHhcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEechHhhccC-----
Confidence 999999999999999997532 357788999999999999999999999999988878999999998765 23
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
.+.+..|++||+|+++++++++.|++
T Consensus 151 ---------~~~~~~Y~~sK~a~~~~~~~la~e~~--------------------------------------------- 176 (254)
T PRK07478 151 ---------FPGMAAYAASKAGLIGLTQVLAAEYG--------------------------------------------- 176 (254)
T ss_pred ---------CCCcchhHHHHHHHHHHHHHHHHHHh---------------------------------------------
Confidence 26778999999999999999999998
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+ .||+||+|+||+|+|++.+..........+........++.+|+|+|+.++||+++ .++++||+.+.-.
T Consensus 177 -----~---~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~s~-~~~~~~G~~~~~d 246 (254)
T PRK07478 177 -----A---QGIRVNALLPGGTDTPMGRAMGDTPEALAFVAGLHALKRMAQPEEIAQAALFLASD-AASFVTGTALLVD 246 (254)
T ss_pred -----h---cCEEEEEEeeCcccCcccccccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCc-hhcCCCCCeEEeC
Confidence 5 79999999999999998766543322222222222222378999999999999965 4579999987543
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-39 Score=294.02 Aligned_cols=241 Identities=25% Similarity=0.307 Sum_probs=203.8
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
.++++|+++||||++|||++++++|+++|++|++++|+.+.+++..+++.... .+.++.++.+|++++++++++++
T Consensus 3 ~~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~ 78 (260)
T PRK07063 3 NRLAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDV----AGARVLAVPADVTDAASVAAAVA 78 (260)
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcc----CCceEEEEEccCCCHHHHHHHHH
Confidence 45899999999999999999999999999999999999988888877776421 25678899999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 92 EILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
++.+.++++|++|||||.... ..+.+.++|++++++|+.+++.+++.++|.|.+++.|+||++||..+..+.
T Consensus 79 ~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------ 152 (260)
T PRK07063 79 AAEEAFGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGRGSIVNIASTHAFKII------ 152 (260)
T ss_pred HHHHHhCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCeEEEEECChhhccCC------
Confidence 999999999999999997543 256788999999999999999999999999988777999999998876664
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
+...+|++||+|+++|+++++.|++
T Consensus 153 --------~~~~~Y~~sKaa~~~~~~~la~el~----------------------------------------------- 177 (260)
T PRK07063 153 --------PGCFPYPVAKHGLLGLTRALGIEYA----------------------------------------------- 177 (260)
T ss_pred --------CCchHHHHHHHHHHHHHHHHHHHhC-----------------------------------------------
Confidence 6678899999999999999999998
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCC----chhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCceec
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSI----IPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYY 323 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~ 323 (330)
+ .|||||+|+||+|+|++....... ....+... .++++ +.+|+|+|++++||+++ .+.++||+.+
T Consensus 178 ---~---~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~va~~~~fl~s~-~~~~itG~~i 248 (260)
T PRK07063 178 ---A---RNVRVNAIAPGYIETQLTEDWWNAQPDPAAARAETLALQPMKR--IGRPEEVAMTAVFLASD-EAPFINATCI 248 (260)
T ss_pred ---c---cCeEEEEEeeCCccChhhhhhhhccCChHHHHHHHHhcCCCCC--CCCHHHHHHHHHHHcCc-cccccCCcEE
Confidence 6 799999999999999986543211 11111111 23444 88999999999999866 5679999987
Q ss_pred ccC
Q psy13409 324 AKA 326 (330)
Q Consensus 324 ~~~ 326 (330)
.-.
T Consensus 249 ~vd 251 (260)
T PRK07063 249 TID 251 (260)
T ss_pred EEC
Confidence 644
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=294.38 Aligned_cols=235 Identities=14% Similarity=0.102 Sum_probs=191.9
Q ss_pred CCCCCEEEEEcCCC--chHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNT--GIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 13 ~~~gk~aLITGas~--gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.++||+++||||++ |||+++++.|+++|++|++++|+. ..++..+++.+.. + ...++.+|++|++++++++
T Consensus 5 ~~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~-~~~~~~~~l~~~~-----g-~~~~~~~Dv~~~~~v~~~~ 77 (260)
T PRK06603 5 LLQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSE-VLEKRVKPLAEEI-----G-CNFVSELDVTNPKSISNLF 77 (260)
T ss_pred ccCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCch-HHHHHHHHHHHhc-----C-CceEEEccCCCHHHHHHHH
Confidence 57899999999997 999999999999999999999884 3444455554321 2 2346789999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCC------CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCC
Q psy13409 91 QEILDNESAIHLLINNAGVMM------CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDG 164 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~------~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~ 164 (330)
+.+.+.++++|++|||||... +..+.+.++|++.+++|+.+++.+++.++|.|.+ +|+||++||.++..+.
T Consensus 78 ~~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~--~G~Iv~isS~~~~~~~- 154 (260)
T PRK06603 78 DDIKEKWGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHD--GGSIVTLTYYGAEKVI- 154 (260)
T ss_pred HHHHHHcCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhcc--CceEEEEecCccccCC-
Confidence 999999999999999999753 2357788999999999999999999999999954 5899999998876553
Q ss_pred CCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccc
Q psy13409 165 SMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYC 244 (330)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
+.+.+|++||+|+++|+++||.|++
T Consensus 155 -------------~~~~~Y~asKaal~~l~~~la~el~------------------------------------------ 179 (260)
T PRK06603 155 -------------PNYNVMGVAKAALEASVKYLANDMG------------------------------------------ 179 (260)
T ss_pred -------------CcccchhhHHHHHHHHHHHHHHHhh------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred cccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCcee
Q psy13409 245 KNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLY 322 (330)
Q Consensus 245 ~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~ 322 (330)
+ .||+||+|+||+|+|++...........+... .++++ +.+|+|+|++++||+++ .++++||+.
T Consensus 180 --------~---~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r--~~~pedva~~~~~L~s~-~~~~itG~~ 245 (260)
T PRK06603 180 --------E---NNIRVNAISAGPIKTLASSAIGDFSTMLKSHAATAPLKR--NTTQEDVGGAAVYLFSE-LSKGVTGEI 245 (260)
T ss_pred --------h---cCeEEEEEecCcCcchhhhcCCCcHHHHHHHHhcCCcCC--CCCHHHHHHHHHHHhCc-ccccCcceE
Confidence 6 79999999999999998654322111111111 24454 78999999999999965 577999998
Q ss_pred cccC
Q psy13409 323 YAKA 326 (330)
Q Consensus 323 ~~~~ 326 (330)
+.-.
T Consensus 246 i~vd 249 (260)
T PRK06603 246 HYVD 249 (260)
T ss_pred EEeC
Confidence 7643
|
|
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=296.07 Aligned_cols=237 Identities=13% Similarity=0.083 Sum_probs=192.7
Q ss_pred CCCCCCEEEEEcC--CCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 12 TRLDGKTAIVTGS--NTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 12 ~~~~gk~aLITGa--s~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
.+++||+++|||| ++|||+++|++|+++|++|++++|+. +.++..+++... ......+.||++++++++++
T Consensus 2 ~~~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~ 74 (261)
T PRK08690 2 GFLQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVD-KLEERVRKMAAE------LDSELVFRCDVASDDEINQV 74 (261)
T ss_pred CccCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcH-HHHHHHHHHHhc------cCCceEEECCCCCHHHHHHH
Confidence 3589999999997 67999999999999999999998864 334444444432 12345789999999999999
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCCC-------CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccC
Q psy13409 90 AQEILDNESAIHLLINNAGVMMCP-------RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWG 162 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~~-------~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~ 162 (330)
++.+.+.++++|++|||||+.... .+.+.++|+..+++|+.+++.+++.++|+|.++ +|+||++||.++..+
T Consensus 75 ~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~-~g~Iv~iss~~~~~~ 153 (261)
T PRK08690 75 FADLGKHWDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGR-NSAIVALSYLGAVRA 153 (261)
T ss_pred HHHHHHHhCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhc-CcEEEEEcccccccC
Confidence 999999999999999999986431 346778899999999999999999999998654 589999999887665
Q ss_pred CCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcc
Q psy13409 163 DGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNH 242 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (330)
. +.+..|++||+|+.+|++++|.|++
T Consensus 154 ~--------------~~~~~Y~asKaal~~l~~~la~e~~---------------------------------------- 179 (261)
T PRK08690 154 I--------------PNYNVMGMAKASLEAGIRFTAACLG---------------------------------------- 179 (261)
T ss_pred C--------------CCcccchhHHHHHHHHHHHHHHHhh----------------------------------------
Confidence 4 6778999999999999999999999
Q ss_pred cccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCc
Q psy13409 243 YCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETG 320 (330)
Q Consensus 243 ~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G 320 (330)
+ .|||||+|+||+|+|++...........+... .++++ +.+|+|+|++++||+++ .++++||
T Consensus 180 ----------~---~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r--~~~peevA~~v~~l~s~-~~~~~tG 243 (261)
T PRK08690 180 ----------K---EGIRCNGISAGPIKTLAASGIADFGKLLGHVAAHNPLRR--NVTIEEVGNTAAFLLSD-LSSGITG 243 (261)
T ss_pred ----------h---cCeEEEEEecCcccchhhhcCCchHHHHHHHhhcCCCCC--CCCHHHHHHHHHHHhCc-ccCCcce
Confidence 6 79999999999999998654422111111111 24455 89999999999999965 5679999
Q ss_pred eecccC
Q psy13409 321 LYYAKA 326 (330)
Q Consensus 321 ~~~~~~ 326 (330)
+.+...
T Consensus 244 ~~i~vd 249 (261)
T PRK08690 244 EITYVD 249 (261)
T ss_pred eEEEEc
Confidence 988654
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=291.59 Aligned_cols=231 Identities=29% Similarity=0.375 Sum_probs=205.5
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
..+++++++|||||+|||.++|++|+++|++|++++|+.++++++.++++.. .+..+.++.+|++++++++.+.+
T Consensus 2 ~~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~-----~~v~v~vi~~DLs~~~~~~~l~~ 76 (265)
T COG0300 2 GPMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDK-----TGVEVEVIPADLSDPEALERLED 76 (265)
T ss_pred CCCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHh-----hCceEEEEECcCCChhHHHHHHH
Confidence 3578999999999999999999999999999999999999999999999886 46789999999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 92 EILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
++.+..+.||+||||||+.... .++++++.++++++|+.+...+++.++|.|.+++.|.||+|+|.+|..+.
T Consensus 77 ~l~~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~ag~~p~------ 150 (265)
T COG0300 77 ELKERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSAAGLIPT------ 150 (265)
T ss_pred HHHhcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechhhcCCC------
Confidence 9999999999999999988654 78999999999999999999999999999999999999999999998886
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
+..+.|++||+++.+|+.+|..|+.
T Consensus 151 --------p~~avY~ATKa~v~~fSeaL~~EL~----------------------------------------------- 175 (265)
T COG0300 151 --------PYMAVYSATKAFVLSFSEALREELK----------------------------------------------- 175 (265)
T ss_pred --------cchHHHHHHHHHHHHHHHHHHHHhc-----------------------------------------------
Confidence 7889999999999999999999998
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCc
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETG 320 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G 320 (330)
+ .||+|.+|+||+|.|+++........ ...+ ...+.+|+++|+..+..+...+..-+.|
T Consensus 176 ---~---~gV~V~~v~PG~~~T~f~~~~~~~~~----~~~~--~~~~~~~~~va~~~~~~l~~~k~~ii~~ 234 (265)
T COG0300 176 ---G---TGVKVTAVCPGPTRTEFFDAKGSDVY----LLSP--GELVLSPEDVAEAALKALEKGKREIIPG 234 (265)
T ss_pred ---C---CCeEEEEEecCccccccccccccccc----cccc--hhhccCHHHHHHHHHHHHhcCCceEecC
Confidence 7 89999999999999999972111111 0001 1227899999999999998776666666
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-39 Score=297.96 Aligned_cols=235 Identities=16% Similarity=0.162 Sum_probs=190.9
Q ss_pred CCCCCEEEEEcCC--CchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSN--TGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 13 ~~~gk~aLITGas--~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.++||++|||||+ +|||+++|+.|+++|++|++++|+.. +.+..+++.+.. +.. .++.+|++|++++++++
T Consensus 2 ~l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~-~~~~~~~~~~~~-----~~~-~~~~~Dv~d~~~v~~~~ 74 (274)
T PRK08415 2 IMKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEA-LKKRVEPIAQEL-----GSD-YVYELDVSKPEHFKSLA 74 (274)
T ss_pred ccCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHH-HHHHHHHHHHhc-----CCc-eEEEecCCCHHHHHHHH
Confidence 4689999999997 89999999999999999999999853 223333333321 223 57899999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCC------CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCC
Q psy13409 91 QEILDNESAIHLLINNAGVMM------CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDG 164 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~------~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~ 164 (330)
+++.+.++++|++|||||+.. +..+.+.++|++++++|+.+++++++.++|.|.+ +|+||++||.++..+.
T Consensus 75 ~~i~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~--~g~Iv~isS~~~~~~~- 151 (274)
T PRK08415 75 ESLKKDLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLND--GASVLTLSYLGGVKYV- 151 (274)
T ss_pred HHHHHHcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhcc--CCcEEEEecCCCccCC-
Confidence 999999999999999999753 2357788999999999999999999999999965 4899999998876553
Q ss_pred CCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccc
Q psy13409 165 SMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYC 244 (330)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
+.+..|++||+|+.+|+++||.|++
T Consensus 152 -------------~~~~~Y~asKaal~~l~~~la~el~------------------------------------------ 176 (274)
T PRK08415 152 -------------PHYNVMGVAKAALESSVRYLAVDLG------------------------------------------ 176 (274)
T ss_pred -------------CcchhhhhHHHHHHHHHHHHHHHhh------------------------------------------
Confidence 5678899999999999999999998
Q ss_pred cccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHH--HHHhhhhhccChHHHHHHHHHhhccccccccCcee
Q psy13409 245 KNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWL--YQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLY 322 (330)
Q Consensus 245 ~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~ 322 (330)
+ +|||||+|+||+|+|++............+. ..++++ +.+|+|+|++++||+++ .++++||+.
T Consensus 177 --------~---~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~pl~r--~~~pedva~~v~fL~s~-~~~~itG~~ 242 (274)
T PRK08415 177 --------K---KGIRVNAISAGPIKTLAASGIGDFRMILKWNEINAPLKK--NVSIEEVGNSGMYLLSD-LSSGVTGEI 242 (274)
T ss_pred --------h---cCeEEEEEecCccccHHHhccchhhHHhhhhhhhCchhc--cCCHHHHHHHHHHHhhh-hhhcccccE
Confidence 6 8999999999999998754332111111111 234555 89999999999999966 567999998
Q ss_pred cccC
Q psy13409 323 YAKA 326 (330)
Q Consensus 323 ~~~~ 326 (330)
+.-.
T Consensus 243 i~vd 246 (274)
T PRK08415 243 HYVD 246 (274)
T ss_pred EEEc
Confidence 7653
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-39 Score=294.63 Aligned_cols=237 Identities=16% Similarity=0.132 Sum_probs=193.9
Q ss_pred CCCCCCEEEEEcCC--CchHHHHHHHHHHCCCEEEEEecChh--HHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHH
Q psy13409 12 TRLDGKTAIVTGSN--TGIGKCTANELAKRGARVIMACRSLE--KAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVR 87 (330)
Q Consensus 12 ~~~~gk~aLITGas--~gIG~aia~~L~~~G~~Vil~~R~~~--~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~ 87 (330)
++++||+++||||+ +|||++++++|+++|++|++++|+.+ +.++..+++.+. ...+.++.+|++|+++++
T Consensus 2 ~~l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dl~d~~~v~ 75 (258)
T PRK07370 2 LDLTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEP------LNPSLFLPCDVQDDAQIE 75 (258)
T ss_pred cccCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhc------cCcceEeecCcCCHHHHH
Confidence 46889999999986 89999999999999999999876543 334444555432 234678999999999999
Q ss_pred HHHHHHHhcCCCeeEEEEcCCCCC------CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCccc
Q psy13409 88 KCAQEILDNESAIHLLINNAGVMM------CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTW 161 (330)
Q Consensus 88 ~l~~~i~~~~g~iDvlInnAG~~~------~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~ 161 (330)
++++++.+.++++|++|||||... +..+.+.++|++.+++|+.+++.+++.++|.|.+ +|+||++||..+..
T Consensus 76 ~~~~~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~--~g~Iv~isS~~~~~ 153 (258)
T PRK07370 76 ETFETIKQKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSE--GGSIVTLTYLGGVR 153 (258)
T ss_pred HHHHHHHHHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhh--CCeEEEEecccccc
Confidence 999999999999999999999753 2357788999999999999999999999999964 48999999988765
Q ss_pred CCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCc
Q psy13409 162 GDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTN 241 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (330)
+. +.+..|++||+|+.+|+++|+.|++
T Consensus 154 ~~--------------~~~~~Y~asKaal~~l~~~la~el~--------------------------------------- 180 (258)
T PRK07370 154 AI--------------PNYNVMGVAKAALEASVRYLAAELG--------------------------------------- 180 (258)
T ss_pred CC--------------cccchhhHHHHHHHHHHHHHHHHhC---------------------------------------
Confidence 53 6778999999999999999999998
Q ss_pred ccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccC
Q psy13409 242 HYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERET 319 (330)
Q Consensus 242 ~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~ 319 (330)
+ +||+||+|+||+|+|++...........+... .++++ +.+|+|+|++++||+++ .++++|
T Consensus 181 -----------~---~gI~Vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r--~~~~~dva~~~~fl~s~-~~~~~t 243 (258)
T PRK07370 181 -----------P---KNIRVNAISAGPIRTLASSAVGGILDMIHHVEEKAPLRR--TVTQTEVGNTAAFLLSD-LASGIT 243 (258)
T ss_pred -----------c---CCeEEEEEecCcccCchhhccccchhhhhhhhhcCCcCc--CCCHHHHHHHHHHHhCh-hhcccc
Confidence 6 89999999999999998654321111111111 24444 88999999999999965 568999
Q ss_pred ceecccC
Q psy13409 320 GLYYAKA 326 (330)
Q Consensus 320 G~~~~~~ 326 (330)
|+.+...
T Consensus 244 G~~i~vd 250 (258)
T PRK07370 244 GQTIYVD 250 (258)
T ss_pred CcEEEEC
Confidence 9987653
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=292.60 Aligned_cols=238 Identities=15% Similarity=0.116 Sum_probs=192.7
Q ss_pred CCCCCCCCEEEEEcCC--CchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHH
Q psy13409 10 ADTRLDGKTAIVTGSN--TGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVR 87 (330)
Q Consensus 10 ~~~~~~gk~aLITGas--~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~ 87 (330)
..++++||++|||||+ +|||++++++|+++|++|++++|+....+ ..+++.+.. ..+.++.||++++++++
T Consensus 4 ~~~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~-~~~~~~~~~------~~~~~~~~D~~~~~~v~ 76 (258)
T PRK07533 4 PLLPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARP-YVEPLAEEL------DAPIFLPLDVREPGQLE 76 (258)
T ss_pred cccccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHH-HHHHHHHhh------ccceEEecCcCCHHHHH
Confidence 3456899999999998 59999999999999999999999864322 233333221 23467899999999999
Q ss_pred HHHHHHHhcCCCeeEEEEcCCCCCC------CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCccc
Q psy13409 88 KCAQEILDNESAIHLLINNAGVMMC------PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTW 161 (330)
Q Consensus 88 ~l~~~i~~~~g~iDvlInnAG~~~~------~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~ 161 (330)
++++++.+.++++|++|||||.... ..+.+.++|++++++|+.+++++++.++|.|.+ +|+||++||..+..
T Consensus 77 ~~~~~~~~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~--~g~Ii~iss~~~~~ 154 (258)
T PRK07533 77 AVFARIAEEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTN--GGSLLTMSYYGAEK 154 (258)
T ss_pred HHHHHHHHHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhcc--CCEEEEEecccccc
Confidence 9999999999999999999997642 246788999999999999999999999999953 58999999987765
Q ss_pred CCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCc
Q psy13409 162 GDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTN 241 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (330)
+. +.+..|++||+|+.+|+++|+.|++
T Consensus 155 ~~--------------~~~~~Y~asKaal~~l~~~la~el~--------------------------------------- 181 (258)
T PRK07533 155 VV--------------ENYNLMGPVKAALESSVRYLAAELG--------------------------------------- 181 (258)
T ss_pred CC--------------ccchhhHHHHHHHHHHHHHHHHHhh---------------------------------------
Confidence 53 6678999999999999999999998
Q ss_pred ccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccC
Q psy13409 242 HYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERET 319 (330)
Q Consensus 242 ~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~ 319 (330)
+ +||+||+|+||+|+|++.+.........+... .++++ +.+|+|+|+.++||+++ .++++|
T Consensus 182 -----------~---~gI~Vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r--~~~p~dva~~~~~L~s~-~~~~it 244 (258)
T PRK07533 182 -----------P---KGIRVHAISPGPLKTRAASGIDDFDALLEDAAERAPLRR--LVDIDDVGAVAAFLASD-AARRLT 244 (258)
T ss_pred -----------h---cCcEEEEEecCCcCChhhhccCCcHHHHHHHHhcCCcCC--CCCHHHHHHHHHHHhCh-hhcccc
Confidence 6 79999999999999998765422111111111 23444 78999999999999966 567999
Q ss_pred ceecccC
Q psy13409 320 GLYYAKA 326 (330)
Q Consensus 320 G~~~~~~ 326 (330)
|+.+.-.
T Consensus 245 G~~i~vd 251 (258)
T PRK07533 245 GNTLYID 251 (258)
T ss_pred CcEEeeC
Confidence 9988654
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=293.79 Aligned_cols=240 Identities=15% Similarity=0.133 Sum_probs=193.1
Q ss_pred CCCCCCCEEEEEcCC--CchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSN--TGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRK 88 (330)
Q Consensus 11 ~~~~~gk~aLITGas--~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~ 88 (330)
+++++||+++||||+ +|||+++|++|+++|++|++++|+.... +..+++.+.. .+.++.++.+|++|++++++
T Consensus 2 ~~~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~-~~~~~~~~~~----~~~~~~~~~~Dv~d~~~v~~ 76 (257)
T PRK08594 2 MLSLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLE-KEVRELADTL----EGQESLLLPCDVTSDEEITA 76 (257)
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccch-HHHHHHHHHc----CCCceEEEecCCCCHHHHHH
Confidence 356899999999997 8999999999999999999998764221 1222222221 14578899999999999999
Q ss_pred HHHHHHhcCCCeeEEEEcCCCCC------CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccC
Q psy13409 89 CAQEILDNESAIHLLINNAGVMM------CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWG 162 (330)
Q Consensus 89 l~~~i~~~~g~iDvlInnAG~~~------~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~ 162 (330)
+++++.+.++++|++|||||+.. +..+.+.++|+..+++|+.+++.+++.++|+|.+ +|+||++||..+..+
T Consensus 77 ~~~~~~~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~--~g~Iv~isS~~~~~~ 154 (257)
T PRK08594 77 CFETIKEEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTE--GGSIVTLTYLGGERV 154 (257)
T ss_pred HHHHHHHhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhccc--CceEEEEcccCCccC
Confidence 99999999999999999999753 2256788999999999999999999999999964 589999999988766
Q ss_pred CCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcc
Q psy13409 163 DGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNH 242 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (330)
. +.+.+|++||+|+++|++++|.|++
T Consensus 155 ~--------------~~~~~Y~asKaal~~l~~~la~el~---------------------------------------- 180 (257)
T PRK08594 155 V--------------QNYNVMGVAKASLEASVKYLANDLG---------------------------------------- 180 (257)
T ss_pred C--------------CCCchhHHHHHHHHHHHHHHHHHhh----------------------------------------
Confidence 3 6678999999999999999999998
Q ss_pred cccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCc
Q psy13409 243 YCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETG 320 (330)
Q Consensus 243 ~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G 320 (330)
+ .|||||+|+||+|+|++.+.........+... .++++ +.+|+|+|++++||+++ .++++||
T Consensus 181 ----------~---~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r--~~~p~~va~~~~~l~s~-~~~~~tG 244 (257)
T PRK08594 181 ----------K---DGIRVNAISAGPIRTLSAKGVGGFNSILKEIEERAPLRR--TTTQEEVGDTAAFLFSD-LSRGVTG 244 (257)
T ss_pred ----------h---cCCEEeeeecCcccCHhHhhhccccHHHHHHhhcCCccc--cCCHHHHHHHHHHHcCc-ccccccc
Confidence 5 79999999999999997654321111111111 23444 78999999999999865 5689999
Q ss_pred eecccCC
Q psy13409 321 LYYAKAD 327 (330)
Q Consensus 321 ~~~~~~~ 327 (330)
+.+...+
T Consensus 245 ~~~~~dg 251 (257)
T PRK08594 245 ENIHVDS 251 (257)
T ss_pred eEEEECC
Confidence 9886543
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=290.18 Aligned_cols=242 Identities=22% Similarity=0.263 Sum_probs=204.4
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
..+++||+++||||++|||++++++|+++|++|++++|+.+++++..+++.+.. .+.++.++.+|+++++++++++
T Consensus 3 ~~~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~v~~~~ 78 (265)
T PRK07062 3 QIQLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKF----PGARLLAARCDVLDEADVAAFA 78 (265)
T ss_pred ccccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhC----CCceEEEEEecCCCHHHHHHHH
Confidence 457899999999999999999999999999999999999988888877776542 2457889999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 91 QEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
+++.+.++++|++|||||.... ..+.+.++|++.+++|+.+++.+++.++|.|.+++.|+||++||..+..+.
T Consensus 79 ~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----- 153 (265)
T PRK07062 79 AAVEARFGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASAAASIVCVNSLLALQPE----- 153 (265)
T ss_pred HHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCcEEEEeccccccCCC-----
Confidence 9999999999999999997643 357788899999999999999999999999988778999999999887664
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
+....|+++|+|+.+|+++++.|++
T Consensus 154 ---------~~~~~y~asKaal~~~~~~la~e~~---------------------------------------------- 178 (265)
T PRK07062 154 ---------PHMVATSAARAGLLNLVKSLATELA---------------------------------------------- 178 (265)
T ss_pred ---------CCchHhHHHHHHHHHHHHHHHHHhh----------------------------------------------
Confidence 5678999999999999999999998
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCC-----CchhhHHHH-------HHhhhhhccChHHHHHHHHHhhcccccc
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDS-----IIPGTAWLY-------QRVGGLFIKSPLQGAQTTLYCALDKKCE 316 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~-----~~~~~~~~~-------~~~~~~~~~~~~e~a~~~~~l~~~~~~~ 316 (330)
+ .||+||+|+||+|+|++...... ......+.. .++++ +.+|+|+|++++||+++ .++
T Consensus 179 ----~---~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r--~~~p~~va~~~~~L~s~-~~~ 248 (265)
T PRK07062 179 ----P---KGVRVNSILLGLVESGQWRRRYEARADPGQSWEAWTAALARKKGIPLGR--LGRPDEAARALFFLASP-LSS 248 (265)
T ss_pred ----h---cCeEEEEEecCccccchhhhHHHHhhccCCChHHHHHHHhhcCCCCcCC--CCCHHHHHHHHHHHhCc-hhc
Confidence 5 79999999999999998653211 111112211 13344 88999999999999865 567
Q ss_pred ccCceecccC
Q psy13409 317 RETGLYYAKA 326 (330)
Q Consensus 317 ~~~G~~~~~~ 326 (330)
++||+.+.-.
T Consensus 249 ~~tG~~i~vd 258 (265)
T PRK07062 249 YTTGSHIDVS 258 (265)
T ss_pred ccccceEEEc
Confidence 9999988654
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=292.25 Aligned_cols=243 Identities=20% Similarity=0.193 Sum_probs=200.8
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEec-ChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACR-SLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R-~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
+.+++||+++||||++|||++++++|+++|++|++++| +.+.+++..+++... .+.++.++.+|++++++++++
T Consensus 3 ~~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~ 77 (260)
T PRK08416 3 SNEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQK-----YGIKAKAYPLNILEPETYKEL 77 (260)
T ss_pred ccccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHh-----cCCceEEEEcCCCCHHHHHHH
Confidence 45689999999999999999999999999999998865 566666666666543 256889999999999999999
Q ss_pred HHHHHhcCCCeeEEEEcCCCCC--------CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCccc
Q psy13409 90 AQEILDNESAIHLLINNAGVMM--------CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTW 161 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~--------~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~ 161 (330)
++++.+.++++|++|||||... +..+.+.+++++.+++|+.+++.+++.++|.|.+++.|+||++||..+..
T Consensus 78 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 157 (260)
T PRK08416 78 FKKIDEDFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVGGGSIISLSSTGNLV 157 (260)
T ss_pred HHHHHHhcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccCCEEEEEEecccccc
Confidence 9999999999999999998642 22456788999999999999999999999999887779999999988765
Q ss_pred CCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCc
Q psy13409 162 GDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTN 241 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (330)
+. +.+..|++||+|+++|+++|+.|+.
T Consensus 158 ~~--------------~~~~~Y~asK~a~~~~~~~la~el~--------------------------------------- 184 (260)
T PRK08416 158 YI--------------ENYAGHGTSKAAVETMVKYAATELG--------------------------------------- 184 (260)
T ss_pred CC--------------CCcccchhhHHHHHHHHHHHHHHhh---------------------------------------
Confidence 53 6678999999999999999999998
Q ss_pred ccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCce
Q psy13409 242 HYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGL 321 (330)
Q Consensus 242 ~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~ 321 (330)
+ +||+||+|+||+|+|++.+.........+.........++.+|+|+|++++||+++ .++++||+
T Consensus 185 -----------~---~gi~v~~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~r~~~p~~va~~~~~l~~~-~~~~~~G~ 249 (260)
T PRK08416 185 -----------E---KNIRVNAVSGGPIDTDALKAFTNYEEVKAKTEELSPLNRMGQPEDLAGACLFLCSE-KASWLTGQ 249 (260)
T ss_pred -----------h---hCeEEEEEeeCcccChhhhhccCCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCh-hhhcccCc
Confidence 5 79999999999999998765543222222222222222388999999999999865 56799999
Q ss_pred ecccC
Q psy13409 322 YYAKA 326 (330)
Q Consensus 322 ~~~~~ 326 (330)
.+-..
T Consensus 250 ~i~vd 254 (260)
T PRK08416 250 TIVVD 254 (260)
T ss_pred EEEEc
Confidence 87654
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=301.31 Aligned_cols=245 Identities=20% Similarity=0.199 Sum_probs=195.5
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh----------hHHHHHHHHHHHhhcccCCCCeEEEEEccC
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL----------EKAETAADDIRTSLKDVKDAGEVVIRQLDL 80 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~----------~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dl 80 (330)
+.+|+||+++||||++|||+++++.|++.|++|++++|+. +++++..+++.. .+.++.++.||+
T Consensus 3 ~~~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~Dv 76 (305)
T PRK08303 3 MKPLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTA------AGGRGIAVQVDH 76 (305)
T ss_pred CcCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHh------cCCceEEEEcCC
Confidence 3568999999999999999999999999999999999984 345555555543 255688899999
Q ss_pred CCHHHHHHHHHHHHhcCCCeeEEEEcC-CCC------CCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEE
Q psy13409 81 SSLKSVRKCAQEILDNESAIHLLINNA-GVM------MCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIIN 153 (330)
Q Consensus 81 s~~~si~~l~~~i~~~~g~iDvlInnA-G~~------~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~ 153 (330)
+++++++++++++.+.++++|++|||| |.. .+..+.+.++|++.+++|+.+++.++++++|.|.++++|+||+
T Consensus 77 ~~~~~v~~~~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~~g~IV~ 156 (305)
T PRK08303 77 LVPEQVRALVERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRPGGLVVE 156 (305)
T ss_pred CCHHHHHHHHHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCcEEEE
Confidence 999999999999999999999999999 753 2234677889999999999999999999999998776799999
Q ss_pred EcCCCcccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhc
Q psy13409 154 LSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCD 233 (330)
Q Consensus 154 iSS~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (330)
+||..+.... .+.+....|++||+|+.+|+++||.|++
T Consensus 157 isS~~~~~~~-----------~~~~~~~~Y~asKaal~~lt~~La~el~------------------------------- 194 (305)
T PRK08303 157 ITDGTAEYNA-----------THYRLSVFYDLAKTSVNRLAFSLAHELA------------------------------- 194 (305)
T ss_pred ECCccccccC-----------cCCCCcchhHHHHHHHHHHHHHHHHHhh-------------------------------
Confidence 9997654331 0123567899999999999999999999
Q ss_pred ccCCCCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCC--CchhhHHH-HHHhhhhhccChHHHHHHHHHhh
Q psy13409 234 ANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDS--IIPGTAWL-YQRVGGLFIKSPLQGAQTTLYCA 310 (330)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~e~a~~~~~l~ 310 (330)
+ .|||||+|+||+|+|++...... .....+.. ..+. ..+..+|+|+|++++||+
T Consensus 195 -------------------~---~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~peevA~~v~fL~ 251 (305)
T PRK08303 195 -------------------P---HGATAVALTPGWLRSEMMLDAFGVTEENWRDALAKEPH-FAISETPRYVGRAVAALA 251 (305)
T ss_pred -------------------h---cCcEEEEecCCccccHHHHHhhccCccchhhhhccccc-cccCCCHHHHHHHHHHHH
Confidence 6 79999999999999998543211 11111111 1221 122678999999999999
Q ss_pred ccccccccCceecccC
Q psy13409 311 LDKKCERETGLYYAKA 326 (330)
Q Consensus 311 ~~~~~~~~~G~~~~~~ 326 (330)
+++..+++||+++...
T Consensus 252 s~~~~~~itG~~l~~~ 267 (305)
T PRK08303 252 ADPDVARWNGQSLSSG 267 (305)
T ss_pred cCcchhhcCCcEEEhH
Confidence 7765568999998754
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=288.14 Aligned_cols=239 Identities=28% Similarity=0.338 Sum_probs=200.2
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
++++||++|||||++|||++++++|+++|++|++++|+.+.+++..++++.. +.++..+.+|++++++++++++
T Consensus 5 ~~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~~~~~~~~~ 78 (253)
T PRK05867 5 FDLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTS------GGKVVPVCCDVSQHQQVTSMLD 78 (253)
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc------CCeEEEEEccCCCHHHHHHHHH
Confidence 3588999999999999999999999999999999999998888887777652 4678899999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCCcc
Q psy13409 92 EILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~~~ 168 (330)
++.+.++++|++|||||.... ..+.+.++|++.+++|+.+++.+++.+++.|.+++ +|+||++||..+..+.
T Consensus 79 ~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~----- 153 (253)
T PRK05867 79 QVTAELGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHIIN----- 153 (253)
T ss_pred HHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHHhcCCC-----
Confidence 999999999999999998643 25678899999999999999999999999997765 5789999998765431
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
.......|++||+|+++|++++++|++
T Consensus 154 -------~~~~~~~Y~asKaal~~~~~~la~e~~---------------------------------------------- 180 (253)
T PRK05867 154 -------VPQQVSHYCASKAAVIHLTKAMAVELA---------------------------------------------- 180 (253)
T ss_pred -------CCCCccchHHHHHHHHHHHHHHHHHHh----------------------------------------------
Confidence 012457899999999999999999998
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHH-HHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWL-YQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+ .||+||+|+||+|+|++....... ...+. ..++++ +.+|+|+|++++||+++ .++++||+.+.-.
T Consensus 181 ----~---~gI~vn~i~PG~v~t~~~~~~~~~--~~~~~~~~~~~r--~~~p~~va~~~~~L~s~-~~~~~tG~~i~vd 247 (253)
T PRK05867 181 ----P---HKIRVNSVSPGYILTELVEPYTEY--QPLWEPKIPLGR--LGRPEELAGLYLYLASE-ASSYMTGSDIVID 247 (253)
T ss_pred ----H---hCeEEEEeecCCCCCcccccchHH--HHHHHhcCCCCC--CcCHHHHHHHHHHHcCc-ccCCcCCCeEEEC
Confidence 5 799999999999999987643211 11111 123444 89999999999999965 5689999987644
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=291.53 Aligned_cols=235 Identities=13% Similarity=0.133 Sum_probs=190.3
Q ss_pred CCCCCEEEEEcCCC--chHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNT--GIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 13 ~~~gk~aLITGas~--gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.++||+++||||++ |||+++++.|+++|++|++++|+ +++++..+++... ...+.++.||++|++++++++
T Consensus 3 ~l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~-~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~v~~~~ 75 (262)
T PRK07984 3 FLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN-DKLKGRVEEFAAQ------LGSDIVLPCDVAEDASIDAMF 75 (262)
T ss_pred ccCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecc-hhHHHHHHHHHhc------cCCceEeecCCCCHHHHHHHH
Confidence 37899999999985 99999999999999999999988 3444555555442 234578899999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCC-------CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCC
Q psy13409 91 QEILDNESAIHLLINNAGVMMC-------PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGD 163 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~-------~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~ 163 (330)
+++.+.++++|++|||||+... ..+.+.++|+..+++|+.+++.+++.++|++. .+|+||++||.++..+.
T Consensus 76 ~~~~~~~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~--~~g~Iv~iss~~~~~~~ 153 (262)
T PRK07984 76 AELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLN--PGSALLTLSYLGAERAI 153 (262)
T ss_pred HHHHhhcCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhc--CCcEEEEEecCCCCCCC
Confidence 9999999999999999997542 23567889999999999999999999998664 34899999998876553
Q ss_pred CCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccc
Q psy13409 164 GSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHY 243 (330)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (330)
+.+.+|++||+|+++|++++|.|++
T Consensus 154 --------------~~~~~Y~asKaal~~l~~~la~el~----------------------------------------- 178 (262)
T PRK07984 154 --------------PNYNVMGLAKASLEANVRYMANAMG----------------------------------------- 178 (262)
T ss_pred --------------CCcchhHHHHHHHHHHHHHHHHHhc-----------------------------------------
Confidence 6778999999999999999999998
Q ss_pred ccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCce
Q psy13409 244 CKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGL 321 (330)
Q Consensus 244 ~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~ 321 (330)
+ .|||||+|+||+|+|++...........+... .++++ +.+|+|+|++++||+++ .++++||+
T Consensus 179 ---------~---~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r--~~~pedva~~~~~L~s~-~~~~itG~ 243 (262)
T PRK07984 179 ---------P---EGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRR--TVTIEDVGNSAAFLCSD-LSAGISGE 243 (262)
T ss_pred ---------c---cCcEEeeeecCcccchHHhcCCchHHHHHHHHHcCCCcC--CCCHHHHHHHHHHHcCc-ccccccCc
Confidence 6 79999999999999987543222111111111 23444 88999999999999865 56799999
Q ss_pred ecccC
Q psy13409 322 YYAKA 326 (330)
Q Consensus 322 ~~~~~ 326 (330)
.+...
T Consensus 244 ~i~vd 248 (262)
T PRK07984 244 VVHVD 248 (262)
T ss_pred EEEEC
Confidence 88654
|
|
| >KOG0725|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-38 Score=291.24 Aligned_cols=243 Identities=31% Similarity=0.349 Sum_probs=202.6
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
.+.+|+||+++||||++|||+++|++|+++|++|++++|+.+.+++....+..... .+.++..+.||++++++++++
T Consensus 2 ~~~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~~~~l 78 (270)
T KOG0725|consen 2 SGGRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGY---TGGKVLAIVCDVSKEVDVEKL 78 (270)
T ss_pred CCccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC---CCCeeEEEECcCCCHHHHHHH
Confidence 34679999999999999999999999999999999999999999888888765321 256799999999999999999
Q ss_pred HHHHHhc-CCCeeEEEEcCCCCCC---CCCCChhhHHHhHHHHHHH-HHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCC
Q psy13409 90 AQEILDN-ESAIHLLINNAGVMMC---PRQLTEDGYELQFATNHLG-HYLFTLLLLPRIIKSAPARIINLSSLAHTWGDG 164 (330)
Q Consensus 90 ~~~i~~~-~g~iDvlInnAG~~~~---~~~~~~~~~~~~l~vN~~g-~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~ 164 (330)
++...+. +|++|+||||||.... ..+.+.++|+..+++|+.| .+.+.+.+.+++.++++|.|+++||..+..+.
T Consensus 79 ~~~~~~~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~ss~~~~~~~- 157 (270)
T KOG0725|consen 79 VEFAVEKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGGSIVNISSVAGVGPG- 157 (270)
T ss_pred HHHHHHHhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCceEEEEeccccccCC-
Confidence 9999888 7999999999998864 3789999999999999995 66667777777777778999999999887663
Q ss_pred CCcccccccccCCCcc-hhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccc
Q psy13409 165 SMHFEDINLEKGYSAT-GAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHY 243 (330)
Q Consensus 165 ~~~~~~~~~~~~~~~~-~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (330)
... .+|+++|+|+++|+|++|.||+
T Consensus 158 -------------~~~~~~Y~~sK~al~~ltr~lA~El~----------------------------------------- 183 (270)
T KOG0725|consen 158 -------------PGSGVAYGVSKAALLQLTRSLAKELA----------------------------------------- 183 (270)
T ss_pred -------------CCCcccchhHHHHHHHHHHHHHHHHh-----------------------------------------
Confidence 233 7899999999999999999999
Q ss_pred ccccccCCCCCCCCceeEEEeeCcccccCcccccCCCc----hhhHH----HHHHhhhhhccChHHHHHHHHHhhccccc
Q psy13409 244 CKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSII----PGTAW----LYQRVGGLFIKSPLQGAQTTLYCALDKKC 315 (330)
Q Consensus 244 ~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~----~~~~~----~~~~~~~~~~~~~~e~a~~~~~l~~~~~~ 315 (330)
+ .|||||+|+||+|.|++ ....... ...+. ...++|+ +..|+|+|+.+.||+++..
T Consensus 184 ---------~---~gIRvN~v~PG~i~T~~-~~~~~~~~~~~~~~~~~~~~~~~p~gr--~g~~~eva~~~~fla~~~a- 247 (270)
T KOG0725|consen 184 ---------K---HGIRVNSVSPGLVKTSL-RAAGLDDGEMEEFKEATDSKGAVPLGR--VGTPEEVAEAAAFLASDDA- 247 (270)
T ss_pred ---------h---cCcEEEEeecCcEeCCc-cccccccchhhHHhhhhccccccccCC--ccCHHHHHHhHHhhcCccc-
Confidence 6 89999999999999998 2221111 11111 1235666 9999999999999997754
Q ss_pred cccCceecccC
Q psy13409 316 ERETGLYYAKA 326 (330)
Q Consensus 316 ~~~~G~~~~~~ 326 (330)
+|+||+.+-..
T Consensus 248 syitG~~i~vd 258 (270)
T KOG0725|consen 248 SYITGQTIIVD 258 (270)
T ss_pred ccccCCEEEEe
Confidence 49999987543
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-38 Score=286.71 Aligned_cols=241 Identities=20% Similarity=0.248 Sum_probs=201.4
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChh-HHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLE-KAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~-~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
++++++|+++||||++|||++++++|+++|++|++++|+.+ .+++..+.++. .+.++.++.+|++++++++++
T Consensus 3 ~~~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~------~~~~~~~~~~D~~~~~~i~~~ 76 (254)
T PRK06114 3 LFDLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEA------AGRRAIQIAADVTSKADLRAA 76 (254)
T ss_pred ccCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHh------cCCceEEEEcCCCCHHHHHHH
Confidence 45689999999999999999999999999999999999764 45666666654 255788999999999999999
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCc
Q psy13409 90 AQEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~ 167 (330)
++++.+.++++|++|||||.... ..+.+.++|++.+++|+.+++.+++.+++.|.+++.++||++||.++..+.+
T Consensus 77 ~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~--- 153 (254)
T PRK06114 77 VARTEAELGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGGSIVNIASMSGIIVNR--- 153 (254)
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcEEEEECchhhcCCCC---
Confidence 99999999999999999998643 3577889999999999999999999999999888789999999998876641
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
......|+++|+|++++++++|.|+.
T Consensus 154 ---------~~~~~~Y~~sKaa~~~l~~~la~e~~--------------------------------------------- 179 (254)
T PRK06114 154 ---------GLLQAHYNASKAGVIHLSKSLAMEWV--------------------------------------------- 179 (254)
T ss_pred ---------CCCcchHHHHHHHHHHHHHHHHHHHh---------------------------------------------
Confidence 12367899999999999999999998
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCceeccc
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAK 325 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~ 325 (330)
+ .||+||+|+||+|+|++...... ....+... .++++ +.+|+|+|++++||+++ .++++||+.+..
T Consensus 180 -----~---~gi~v~~v~PG~i~t~~~~~~~~-~~~~~~~~~~~p~~r--~~~~~dva~~~~~l~s~-~~~~~tG~~i~~ 247 (254)
T PRK06114 180 -----G---RGIRVNSISPGYTATPMNTRPEM-VHQTKLFEEQTPMQR--MAKVDEMVGPAVFLLSD-AASFCTGVDLLV 247 (254)
T ss_pred -----h---cCeEEEEEeecCccCcccccccc-hHHHHHHHhcCCCCC--CcCHHHHHHHHHHHcCc-cccCcCCceEEE
Confidence 5 79999999999999998754211 11122222 34555 88999999999999865 578999998864
Q ss_pred C
Q psy13409 326 A 326 (330)
Q Consensus 326 ~ 326 (330)
.
T Consensus 248 d 248 (254)
T PRK06114 248 D 248 (254)
T ss_pred C
Confidence 4
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-38 Score=290.00 Aligned_cols=235 Identities=28% Similarity=0.398 Sum_probs=198.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
+++||++|||||++|||+++++.|+++|++|++++|+ +.+++..+++.+ .+.++.++.+|+++++++++++++
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~------~~~~~~~~~~Dl~~~~~~~~~~~~ 75 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKS------NGGKAKAYHVDISDEQQVKDFASE 75 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHh------cCCeEEEEEeecCCHHHHHHHHHH
Confidence 5789999999999999999999999999999999999 777777777654 256789999999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCC---CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 93 ILDNESAIHLLINNAGVMMC---PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~---~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
+.+.++++|++|||||.... ..+.+.+.|++++++|+.+++.+++.++|.|.+++ |+||++||..+..+.
T Consensus 76 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~------ 148 (272)
T PRK08589 76 IKEQFGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQG-GSIINTSSFSGQAAD------ 148 (272)
T ss_pred HHHHcCCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEEEEeCchhhcCCC------
Confidence 99999999999999998642 25678899999999999999999999999998764 899999998877664
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
+...+|++||+|+++|++++|+|++
T Consensus 149 --------~~~~~Y~asKaal~~l~~~la~e~~----------------------------------------------- 173 (272)
T PRK08589 149 --------LYRSGYNAAKGAVINFTKSIAIEYG----------------------------------------------- 173 (272)
T ss_pred --------CCCchHHHHHHHHHHHHHHHHHHhh-----------------------------------------------
Confidence 5678899999999999999999998
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCchh--hHHH------HHHhhhhhccChHHHHHHHHHhhccccccccCce
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPG--TAWL------YQRVGGLFIKSPLQGAQTTLYCALDKKCERETGL 321 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~--~~~~------~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~ 321 (330)
+ .||+||+|+||+|+|++........+. .... ..++++ +.+|+|+|+.++||+++ .+++++|+
T Consensus 174 ---~---~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~va~~~~~l~s~-~~~~~~G~ 244 (272)
T PRK08589 174 ---R---DGIRANAIAPGTIETPLVDKLTGTSEDEAGKTFRENQKWMTPLGR--LGKPEEVAKLVVFLASD-DSSFITGE 244 (272)
T ss_pred ---h---cCeEEEEEecCcccCchhhhhcccchhhHHHHHhhhhhccCCCCC--CcCHHHHHHHHHHHcCc-hhcCcCCC
Confidence 6 799999999999999987654321110 0011 123444 78999999999999966 46799999
Q ss_pred eccc
Q psy13409 322 YYAK 325 (330)
Q Consensus 322 ~~~~ 325 (330)
.+..
T Consensus 245 ~i~v 248 (272)
T PRK08589 245 TIRI 248 (272)
T ss_pred EEEE
Confidence 8764
|
|
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-38 Score=288.66 Aligned_cols=236 Identities=13% Similarity=0.102 Sum_probs=188.0
Q ss_pred CCCCCCEEEEEcC--CCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 12 TRLDGKTAIVTGS--NTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 12 ~~~~gk~aLITGa--s~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
.++++|+++|||| ++|||++++++|+++|++|++++|..... +..+++.+.. + ...++.+|++|+++++++
T Consensus 2 ~~l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~-~~~~~~~~~~-----~-~~~~~~~Dv~d~~~v~~~ 74 (260)
T PRK06997 2 GFLAGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFK-DRITEFAAEF-----G-SDLVFPCDVASDEQIDAL 74 (260)
T ss_pred CccCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHH-HHHHHHHHhc-----C-CcceeeccCCCHHHHHHH
Confidence 3578999999996 68999999999999999999987653222 2223333221 2 234689999999999999
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCC-------CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccC
Q psy13409 90 AQEILDNESAIHLLINNAGVMMC-------PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWG 162 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~-------~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~ 162 (330)
++.+.+.++++|++|||||.... ..+.+.++|+..+++|+.+++.++++++|+|. ++|+||++||.++..+
T Consensus 75 ~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~--~~g~Ii~iss~~~~~~ 152 (260)
T PRK06997 75 FASLGQHWDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLS--DDASLLTLSYLGAERV 152 (260)
T ss_pred HHHHHHHhCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCceEEEEeccccccC
Confidence 99999999999999999998642 13567889999999999999999999999994 3589999999887655
Q ss_pred CCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcc
Q psy13409 163 DGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNH 242 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (330)
. +.+.+|++||+|+++|+++||.|++
T Consensus 153 ~--------------~~~~~Y~asKaal~~l~~~la~el~---------------------------------------- 178 (260)
T PRK06997 153 V--------------PNYNTMGLAKASLEASVRYLAVSLG---------------------------------------- 178 (260)
T ss_pred C--------------CCcchHHHHHHHHHHHHHHHHHHhc----------------------------------------
Confidence 3 6677899999999999999999998
Q ss_pred cccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCc
Q psy13409 243 YCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETG 320 (330)
Q Consensus 243 ~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G 320 (330)
+ +|||||+|+||+|+|++...........+... .++++ +.+|+|+|++++||+++ .++++||
T Consensus 179 ----------~---~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r--~~~pedva~~~~~l~s~-~~~~itG 242 (260)
T PRK06997 179 ----------P---KGIRANGISAGPIKTLAASGIKDFGKILDFVESNAPLRR--NVTIEEVGNVAAFLLSD-LASGVTG 242 (260)
T ss_pred ----------c---cCeEEEEEeeCccccchhccccchhhHHHHHHhcCcccc--cCCHHHHHHHHHHHhCc-cccCcce
Confidence 6 79999999999999987654322111111111 24454 88999999999999976 5679999
Q ss_pred eecccC
Q psy13409 321 LYYAKA 326 (330)
Q Consensus 321 ~~~~~~ 326 (330)
+.+...
T Consensus 243 ~~i~vd 248 (260)
T PRK06997 243 EITHVD 248 (260)
T ss_pred eEEEEc
Confidence 988653
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=284.20 Aligned_cols=241 Identities=24% Similarity=0.328 Sum_probs=204.7
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
+++++|++|||||++|||++++++|+++|++|++++|+.+++++..+++... +.++.++.+|++++++++++++
T Consensus 5 ~~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dl~~~~~~~~~~~ 78 (254)
T PRK08085 5 FSLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQE------GIKAHAAPFNVTHKQEVEAAIE 78 (254)
T ss_pred ccCCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhc------CCeEEEEecCCCCHHHHHHHHH
Confidence 4689999999999999999999999999999999999988888877777542 4578889999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 92 EILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
.+.+.++++|++|||+|.... ..+.+.++|++.+++|+.+++.+++.+++.|.+++.++||++||..+..+.
T Consensus 79 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~------ 152 (254)
T PRK08085 79 HIEKDIGPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICSMQSELGR------ 152 (254)
T ss_pred HHHHhcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccchhccCC------
Confidence 999999999999999997643 356788999999999999999999999999987777999999998876664
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
+....|+++|++++.++++++.|++
T Consensus 153 --------~~~~~Y~~sK~a~~~~~~~la~e~~----------------------------------------------- 177 (254)
T PRK08085 153 --------DTITPYAASKGAVKMLTRGMCVELA----------------------------------------------- 177 (254)
T ss_pred --------CCCcchHHHHHHHHHHHHHHHHHHH-----------------------------------------------
Confidence 5677999999999999999999998
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+ .||+||+|+||+++|++...........++........++.+|+|+|++++||+++ .++++||+.+--.
T Consensus 178 ---~---~gi~v~~v~pG~~~t~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~va~~~~~l~~~-~~~~i~G~~i~~d 247 (254)
T PRK08085 178 ---R---HNIQVNGIAPGYFKTEMTKALVEDEAFTAWLCKRTPAARWGDPQELIGAAVFLSSK-ASDFVNGHLLFVD 247 (254)
T ss_pred ---h---hCeEEEEEEeCCCCCcchhhhccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCc-cccCCcCCEEEEC
Confidence 5 79999999999999998765433222233333322223388999999999999965 6789999987543
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=289.75 Aligned_cols=236 Identities=14% Similarity=0.119 Sum_probs=190.8
Q ss_pred CCCCCEEEEEcCC--CchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSN--TGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 13 ~~~gk~aLITGas--~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.++||++|||||+ +|||+++|++|+++|++|++++|+.. ..+..+++.+.. +....+.+|+++++++++++
T Consensus 7 ~~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~-~~~~~~~l~~~~------~~~~~~~~Dl~~~~~v~~~~ 79 (272)
T PRK08159 7 LMAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDA-LKKRVEPLAAEL------GAFVAGHCDVTDEASIDAVF 79 (272)
T ss_pred cccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchH-HHHHHHHHHHhc------CCceEEecCCCCHHHHHHHH
Confidence 4689999999997 89999999999999999999988742 223333333321 23557899999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCC------CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCC
Q psy13409 91 QEILDNESAIHLLINNAGVMM------CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDG 164 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~------~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~ 164 (330)
+++.+.++++|++|||||+.. +..+.+.++|+..+++|+.+++.+++.++|+|.+ +|+||++||.++..+.
T Consensus 80 ~~~~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~--~g~Iv~iss~~~~~~~- 156 (272)
T PRK08159 80 ETLEKKWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTD--GGSILTLTYYGAEKVM- 156 (272)
T ss_pred HHHHHhcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCC--CceEEEEeccccccCC-
Confidence 999999999999999999864 2256788999999999999999999999999854 4899999998765553
Q ss_pred CCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccc
Q psy13409 165 SMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYC 244 (330)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
+.+..|++||+|+.+|+++|+.|+.
T Consensus 157 -------------p~~~~Y~asKaal~~l~~~la~el~------------------------------------------ 181 (272)
T PRK08159 157 -------------PHYNVMGVAKAALEASVKYLAVDLG------------------------------------------ 181 (272)
T ss_pred -------------CcchhhhhHHHHHHHHHHHHHHHhc------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred cccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHH--HHHhhhhhccChHHHHHHHHHhhccccccccCcee
Q psy13409 245 KNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWL--YQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLY 322 (330)
Q Consensus 245 ~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~ 322 (330)
+ .|||||+|+||+|+|++...........++. ..++++ +.+|+|+|++++||+++ .++++||+.
T Consensus 182 --------~---~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r--~~~peevA~~~~~L~s~-~~~~itG~~ 247 (272)
T PRK08159 182 --------P---KNIRVNAISAGPIKTLAASGIGDFRYILKWNEYNAPLRR--TVTIEEVGDSALYLLSD-LSRGVTGEV 247 (272)
T ss_pred --------c---cCeEEEEeecCCcCCHHHhcCCcchHHHHHHHhCCcccc--cCCHHHHHHHHHHHhCc-cccCccceE
Confidence 6 8999999999999998765432211111222 134455 78999999999999965 567999998
Q ss_pred cccCC
Q psy13409 323 YAKAD 327 (330)
Q Consensus 323 ~~~~~ 327 (330)
+....
T Consensus 248 i~vdg 252 (272)
T PRK08159 248 HHVDS 252 (272)
T ss_pred EEECC
Confidence 86543
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=286.06 Aligned_cols=236 Identities=17% Similarity=0.136 Sum_probs=188.5
Q ss_pred CCCCCCCEEEEEcC--CCchHHHHHHHHHHCCCEEEEEecCh--hHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHH
Q psy13409 11 DTRLDGKTAIVTGS--NTGIGKCTANELAKRGARVIMACRSL--EKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSV 86 (330)
Q Consensus 11 ~~~~~gk~aLITGa--s~gIG~aia~~L~~~G~~Vil~~R~~--~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si 86 (330)
+.++++|+++|||| ++|||++++++|+++|++|++++|+. +.++++.+++ +.++.++.+|+++++++
T Consensus 2 ~~~~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~---------~~~~~~~~~Dv~~~~~i 72 (256)
T PRK07889 2 MGLLEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRL---------PEPAPVLELDVTNEEHL 72 (256)
T ss_pred cccccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhc---------CCCCcEEeCCCCCHHHH
Confidence 34589999999999 89999999999999999999999864 2233332222 23567899999999999
Q ss_pred HHHHHHHHhcCCCeeEEEEcCCCCCC------CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcc
Q psy13409 87 RKCAQEILDNESAIHLLINNAGVMMC------PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHT 160 (330)
Q Consensus 87 ~~l~~~i~~~~g~iDvlInnAG~~~~------~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~ 160 (330)
+++++++.+.++++|++|||||+... ..+.+.++|++++++|+.+++.+++.++|+|.+ +|+||++||.. .
T Consensus 73 ~~~~~~~~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~--~g~Iv~is~~~-~ 149 (256)
T PRK07889 73 ASLADRVREHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNE--GGSIVGLDFDA-T 149 (256)
T ss_pred HHHHHHHHHHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhccc--CceEEEEeecc-c
Confidence 99999999999999999999998632 246678999999999999999999999999964 48999998753 2
Q ss_pred cCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCC
Q psy13409 161 WGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPT 240 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (330)
.+ .+.+..|++||+|+++|+++|+.|++
T Consensus 150 ~~--------------~~~~~~Y~asKaal~~l~~~la~el~-------------------------------------- 177 (256)
T PRK07889 150 VA--------------WPAYDWMGVAKAALESTNRYLARDLG-------------------------------------- 177 (256)
T ss_pred cc--------------CCccchhHHHHHHHHHHHHHHHHHhh--------------------------------------
Confidence 22 25677899999999999999999998
Q ss_pred cccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhcccccccc
Q psy13409 241 NHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERE 318 (330)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~ 318 (330)
+ +|||||+|+||+|+|++.+.........+... .++++ ++.+|+|+|+.++||+++ .++++
T Consensus 178 ------------~---~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~~-~~~~p~evA~~v~~l~s~-~~~~~ 240 (256)
T PRK07889 178 ------------P---RGIRVNLVAAGPIRTLAAKAIPGFELLEEGWDERAPLGW-DVKDPTPVARAVVALLSD-WFPAT 240 (256)
T ss_pred ------------h---cCeEEEeeccCcccChhhhcccCcHHHHHHHHhcCcccc-ccCCHHHHHHHHHHHhCc-ccccc
Confidence 6 79999999999999998765432111111111 22331 378999999999999966 46799
Q ss_pred CceecccCC
Q psy13409 319 TGLYYAKAD 327 (330)
Q Consensus 319 ~G~~~~~~~ 327 (330)
||+++....
T Consensus 241 tG~~i~vdg 249 (256)
T PRK07889 241 TGEIVHVDG 249 (256)
T ss_pred cceEEEEcC
Confidence 999986543
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=282.27 Aligned_cols=240 Identities=25% Similarity=0.314 Sum_probs=201.6
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
++++||++|||||++|||.+++++|+++|++|++++|+ +..++..+.+.+ .+.++.++.+|++++++++++++
T Consensus 11 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~------~~~~~~~~~~D~~~~~~i~~~~~ 83 (258)
T PRK06935 11 FSLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEK------EGRKVTFVQVDLTKPESAEKVVK 83 (258)
T ss_pred ccCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHh------cCCceEEEEcCCCCHHHHHHHHH
Confidence 46899999999999999999999999999999999998 555555555543 25678899999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 92 EILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
++.+.++.+|++|||+|...+ ..+.+.++|++.+++|+.+++.+++.+++.|.+++.|+||++||..+..+.
T Consensus 84 ~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------ 157 (258)
T PRK06935 84 EALEEFGKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIINIASMLSFQGG------ 157 (258)
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEEEECCHHhccCC------
Confidence 999999999999999997643 256678899999999999999999999999988888999999999877664
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
+....|+++|+|++++++++++|+.
T Consensus 158 --------~~~~~Y~asK~a~~~~~~~la~e~~----------------------------------------------- 182 (258)
T PRK06935 158 --------KFVPAYTASKHGVAGLTKAFANELA----------------------------------------------- 182 (258)
T ss_pred --------CCchhhHHHHHHHHHHHHHHHHHhh-----------------------------------------------
Confidence 5678999999999999999999998
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+ .||+||+|+||+|+|++.+.........+......+..+..+|+|+|++++||+++ .++++||+.+...
T Consensus 183 ---~---~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~-~~~~~~G~~i~~d 252 (258)
T PRK06935 183 ---A---YNIQVNAIAPGYIKTANTAPIRADKNRNDEILKRIPAGRWGEPDDLMGAAVFLASR-ASDYVNGHILAVD 252 (258)
T ss_pred ---h---hCeEEEEEEeccccccchhhcccChHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCh-hhcCCCCCEEEEC
Confidence 6 79999999999999998765443222222222223333489999999999999965 5679999988643
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=282.81 Aligned_cols=235 Identities=20% Similarity=0.247 Sum_probs=197.8
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
.++++|+++||||++|||++++++|+++|++|++++|+.+.+++..+++ +.++.++.+|++++++++++++
T Consensus 2 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~Dl~~~~~~~~~~~ 72 (261)
T PRK08265 2 IGLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL---------GERARFIATDITDDAAIERAVA 72 (261)
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---------CCeeEEEEecCCCHHHHHHHHH
Confidence 4578999999999999999999999999999999999987766655443 4568899999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCCC-CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 92 EILDNESAIHLLINNAGVMMCP-RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~-~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
.+.+.++++|++|||||..... .+.+.++|++.+++|+.+++.+++.+++.|. ++.|+||++||.++..+.
T Consensus 73 ~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~-~~~g~ii~isS~~~~~~~------- 144 (261)
T PRK08265 73 TVVARFGRVDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLA-RGGGAIVNFTSISAKFAQ------- 144 (261)
T ss_pred HHHHHhCCCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHh-cCCcEEEEECchhhccCC-------
Confidence 9999999999999999976432 4568899999999999999999999999997 557999999999887774
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
+.+..|+++|++++.++++++.|+.
T Consensus 145 -------~~~~~Y~asKaa~~~~~~~la~e~~------------------------------------------------ 169 (261)
T PRK08265 145 -------TGRWLYPASKAAIRQLTRSMAMDLA------------------------------------------------ 169 (261)
T ss_pred -------CCCchhHHHHHHHHHHHHHHHHHhc------------------------------------------------
Confidence 6678999999999999999999998
Q ss_pred CCCCCCCceeEEEeeCcccccCcccccCCCch-hhHHHH---HHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 251 PPGANITNVNTYAVHPGVVDTELSRHFDSIIP-GTAWLY---QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 251 ~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+ .||+||+|+||+++|++......... ...... .++++ +.+|+|+|++++||+++ .++++||+.|.-.
T Consensus 170 --~---~gi~vn~v~PG~~~t~~~~~~~~~~~~~~~~~~~~~~p~~r--~~~p~dva~~~~~l~s~-~~~~~tG~~i~vd 241 (261)
T PRK08265 170 --P---DGIRVNSVSPGWTWSRVMDELSGGDRAKADRVAAPFHLLGR--VGDPEEVAQVVAFLCSD-AASFVTGADYAVD 241 (261)
T ss_pred --c---cCEEEEEEccCCccChhhhhhcccchhHHHHhhcccCCCCC--ccCHHHHHHHHHHHcCc-cccCccCcEEEEC
Confidence 6 79999999999999998755332111 111111 24444 78999999999999965 4679999987653
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-37 Score=284.19 Aligned_cols=242 Identities=29% Similarity=0.331 Sum_probs=203.5
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
.++++++|+++||||++|||++++++|+++|++|++++|+.+.+++..+++.. .+.++.++.+|++++++++.+
T Consensus 4 ~~~~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~------~~~~~~~~~~Dl~~~~~v~~~ 77 (278)
T PRK08277 4 NLFSLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKA------AGGEALAVKADVLDKESLEQA 77 (278)
T ss_pred ceeccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh------cCCeEEEEECCCCCHHHHHHH
Confidence 33468999999999999999999999999999999999998888777777654 255789999999999999999
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCC-----------------CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEE
Q psy13409 90 AQEILDNESAIHLLINNAGVMMC-----------------PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARII 152 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~-----------------~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV 152 (330)
++++.+.++++|++|||||...+ ..+.+.++|+..+++|+.+++.+++.+++.|.+++.|+||
T Consensus 78 ~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii 157 (278)
T PRK08277 78 RQQILEDFGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRKGGNII 157 (278)
T ss_pred HHHHHHHcCCCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEE
Confidence 99999999999999999996532 2356788999999999999999999999999887789999
Q ss_pred EEcCCCcccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhh
Q psy13409 153 NLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLC 232 (330)
Q Consensus 153 ~iSS~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (330)
++||..+..+. +....|++||+|+++|+++++.|+.
T Consensus 158 ~isS~~~~~~~--------------~~~~~Y~~sK~a~~~l~~~la~e~~------------------------------ 193 (278)
T PRK08277 158 NISSMNAFTPL--------------TKVPAYSAAKAAISNFTQWLAVHFA------------------------------ 193 (278)
T ss_pred EEccchhcCCC--------------CCCchhHHHHHHHHHHHHHHHHHhC------------------------------
Confidence 99999887664 6778999999999999999999998
Q ss_pred cccCCCCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCc-----hhhHHHH--HHhhhhhccChHHHHHH
Q psy13409 233 DANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSII-----PGTAWLY--QRVGGLFIKSPLQGAQT 305 (330)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~-----~~~~~~~--~~~~~~~~~~~~e~a~~ 305 (330)
. +||+||+|+||+|+|++.+.+.... ...+... .++++ +.+|+|+|++
T Consensus 194 --------------------~---~girvn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~p~~r--~~~~~dva~~ 248 (278)
T PRK08277 194 --------------------K---VGIRVNAIAPGFFLTEQNRALLFNEDGSLTERANKILAHTPMGR--FGKPEELLGT 248 (278)
T ss_pred --------------------c---cCeEEEEEEeccCcCcchhhhhccccccchhHHHHHhccCCccC--CCCHHHHHHH
Confidence 5 7999999999999999865442211 1111111 23444 8899999999
Q ss_pred HHHhhccccccccCceecccC
Q psy13409 306 TLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 306 ~~~l~~~~~~~~~~G~~~~~~ 326 (330)
++||++++.++++||+.+.-.
T Consensus 249 ~~~l~s~~~~~~~tG~~i~vd 269 (278)
T PRK08277 249 LLWLADEKASSFVTGVVLPVD 269 (278)
T ss_pred HHHHcCccccCCcCCCEEEEC
Confidence 999987636789999988654
|
|
| >KOG1205|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=287.51 Aligned_cols=177 Identities=29% Similarity=0.384 Sum_probs=162.7
Q ss_pred ccCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHH
Q psy13409 8 CTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVR 87 (330)
Q Consensus 8 ~~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~ 87 (330)
+..+.++.||+|+|||||+|||.++|.+|++.|++++++.|...+++++.+++++.... .++.+++||++|+++++
T Consensus 4 ~~~~e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~----~~v~~~~~Dvs~~~~~~ 79 (282)
T KOG1205|consen 4 NLFMERLAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSL----EKVLVLQLDVSDEESVK 79 (282)
T ss_pred cccHHHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCc----CccEEEeCccCCHHHHH
Confidence 44556799999999999999999999999999999999999999999998888876532 26999999999999999
Q ss_pred HHHHHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCC
Q psy13409 88 KCAQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGS 165 (330)
Q Consensus 88 ~l~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~ 165 (330)
++++++...+|++|+||||||+.... .+.+.+++...+++|++|++.++++++|+|++++.|+||++||++|..+.
T Consensus 80 ~~~~~~~~~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~~~~-- 157 (282)
T KOG1205|consen 80 KFVEWAIRHFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGKMPL-- 157 (282)
T ss_pred HHHHHHHHhcCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccccccCC--
Confidence 99999999999999999999998733 67788999999999999999999999999999988999999999999885
Q ss_pred CcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhc
Q psy13409 166 MHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQ 202 (330)
Q Consensus 166 ~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~ 202 (330)
|....|++||+|+.+|+.+|.+|+.
T Consensus 158 ------------P~~~~Y~ASK~Al~~f~etLR~El~ 182 (282)
T KOG1205|consen 158 ------------PFRSIYSASKHALEGFFETLRQELI 182 (282)
T ss_pred ------------CcccccchHHHHHHHHHHHHHHHhh
Confidence 6667999999999999999999998
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=277.97 Aligned_cols=243 Identities=22% Similarity=0.262 Sum_probs=204.9
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
++++++|+++||||++|||.+++++|+++|++|++++|+.+.++++.+++.+. +.++.++.+|+++.+++++++
T Consensus 3 ~~~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~ 76 (252)
T PRK07035 3 LFDLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAA------GGKAEALACHIGEMEQIDALF 76 (252)
T ss_pred ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEEcCCCCHHHHHHHH
Confidence 35689999999999999999999999999999999999988888877777542 456788999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCC---CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCc
Q psy13409 91 QEILDNESAIHLLINNAGVMM---CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~---~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~ 167 (330)
+++.+.++++|++|||||... +..+.+.++++..+++|+.+++.+++.++++|.+++.++||++||..+..+.
T Consensus 77 ~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~---- 152 (252)
T PRK07035 77 AHIRERHGRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVASVNGVSPG---- 152 (252)
T ss_pred HHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECchhhcCCC----
Confidence 999999999999999999753 2356788999999999999999999999999988778999999998876664
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
++++.|++||++++.+++++++|+.
T Consensus 153 ----------~~~~~Y~~sK~al~~~~~~l~~e~~--------------------------------------------- 177 (252)
T PRK07035 153 ----------DFQGIYSITKAAVISMTKAFAKECA--------------------------------------------- 177 (252)
T ss_pred ----------CCCcchHHHHHHHHHHHHHHHHHHh---------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
+ .||+||+|+||+|+|++...........+.........++.+|+|+|+.++||+++ .+.+++|+++....
T Consensus 178 -----~---~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~-~~~~~~g~~~~~dg 248 (252)
T PRK07035 178 -----P---FGIRVNALLPGLTDTKFASALFKNDAILKQALAHIPLRRHAEPSEMAGAVLYLASD-ASSYTTGECLNVDG 248 (252)
T ss_pred -----h---cCEEEEEEeeccccCcccccccCCHHHHHHHHccCCCCCcCCHHHHHHHHHHHhCc-cccCccCCEEEeCC
Confidence 5 79999999999999998766543322222222222223378999999999999866 56799999987543
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=277.94 Aligned_cols=242 Identities=24% Similarity=0.275 Sum_probs=205.0
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
+.+++|+++||||++|||.+++++|+++|++|++++|+.+.+++..+.+++ .+.++.++.+|+++.++++.+++
T Consensus 3 ~~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~------~~~~~~~~~~D~~~~~~i~~~~~ 76 (253)
T PRK06172 3 MTFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIRE------AGGEALFVACDVTRDAEVKALVE 76 (253)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh------cCCceEEEEcCCCCHHHHHHHHH
Confidence 458999999999999999999999999999999999999888877777754 25678999999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCC---CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 92 EILDNESAIHLLINNAGVMMC---PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~---~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
.+.+.++++|++|||+|...+ ..+.+.+++++++++|+.+++.++++++|.|.+++.++||++||..+..+.
T Consensus 77 ~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~----- 151 (253)
T PRK06172 77 QTIAAYGRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGGGAIVNTASVAGLGAA----- 151 (253)
T ss_pred HHHHHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECchhhccCC-----
Confidence 999999999999999997643 256788999999999999999999999999988777999999998877664
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
+++..|+++|+|+++|++++++++.
T Consensus 152 ---------~~~~~Y~~sKaa~~~~~~~la~e~~---------------------------------------------- 176 (253)
T PRK06172 152 ---------PKMSIYAASKHAVIGLTKSAAIEYA---------------------------------------------- 176 (253)
T ss_pred ---------CCCchhHHHHHHHHHHHHHHHHHhc----------------------------------------------
Confidence 6788999999999999999999998
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCC-CchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDS-IIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
. .||+|++|+||+|+|++...... .+...+.........++.+|+|+|+.++||+++ .+.++||++|...+
T Consensus 177 ----~---~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~~~~l~~~-~~~~~~G~~i~~dg 248 (253)
T PRK06172 177 ----K---KGIRVNAVCPAVIDTDMFRRAYEADPRKAEFAAAMHPVGRIGKVEEVASAVLYLCSD-GASFTTGHALMVDG 248 (253)
T ss_pred ----c---cCeEEEEEEeCCccChhhhhhcccChHHHHHHhccCCCCCccCHHHHHHHHHHHhCc-cccCcCCcEEEECC
Confidence 5 79999999999999999876533 122222222222222378999999999999966 46799999986554
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=279.13 Aligned_cols=239 Identities=20% Similarity=0.253 Sum_probs=196.3
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
++++||+++||||++|||++++++|+++|++|++++++.. .+..+.+.. .+.++.++.+|++++++++++++
T Consensus 6 ~~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~~------~~~~~~~~~~Dl~~~~~~~~~~~ 77 (253)
T PRK08993 6 FSLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEP--TETIEQVTA------LGRRFLSLTADLRKIDGIPALLE 77 (253)
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHHh------cCCeEEEEECCCCCHHHHHHHHH
Confidence 4689999999999999999999999999999998877642 334444433 24578899999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCCcc
Q psy13409 92 EILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~~~ 168 (330)
++.+.++++|++|||||.... ..+.+.++|++++++|+.+++.+++++++.|.+++ .|+||++||..+..+.
T Consensus 78 ~~~~~~~~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~----- 152 (253)
T PRK08993 78 RAVAEFGHIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGG----- 152 (253)
T ss_pred HHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhccCC-----
Confidence 999999999999999998643 25678899999999999999999999999998764 5899999999876664
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
+....|+++|+|+++++++++.|+.
T Consensus 153 ---------~~~~~Y~~sKaa~~~~~~~la~e~~---------------------------------------------- 177 (253)
T PRK08993 153 ---------IRVPSYTASKSGVMGVTRLMANEWA---------------------------------------------- 177 (253)
T ss_pred ---------CCCcchHHHHHHHHHHHHHHHHHhh----------------------------------------------
Confidence 5667999999999999999999998
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+ .||+||+|+||+|+|++.....................++.+|+|+|+.++||+++ .+++++|+.+...
T Consensus 178 ----~---~gi~v~~v~pG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~p~eva~~~~~l~s~-~~~~~~G~~~~~d 247 (253)
T PRK08993 178 ----K---HNINVNAIAPGYMATNNTQQLRADEQRSAEILDRIPAGRWGLPSDLMGPVVFLASS-ASDYINGYTIAVD 247 (253)
T ss_pred ----h---hCeEEEEEeeCcccCcchhhhccchHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCc-cccCccCcEEEEC
Confidence 5 79999999999999998765432221111222222223388999999999999975 5679999987643
|
|
| >PLN02730 enoyl-[acyl-carrier-protein] reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=289.44 Aligned_cols=242 Identities=16% Similarity=0.138 Sum_probs=191.7
Q ss_pred CCCCCCEEEEEcC--CCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhc-c---cCCC---CeEEEEEccC--
Q psy13409 12 TRLDGKTAIVTGS--NTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLK-D---VKDA---GEVVIRQLDL-- 80 (330)
Q Consensus 12 ~~~~gk~aLITGa--s~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~-~---~~~~---~~v~~i~~Dl-- 80 (330)
++|+||++||||| ++|||+++|+.|++.|++|++ +|+.+++++..+.+++... . ...+ .....+.+|+
T Consensus 5 ~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 83 (303)
T PLN02730 5 IDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAVF 83 (303)
T ss_pred cCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeecceec
Confidence 3589999999999 899999999999999999999 7888888888776653100 0 0001 1246788898
Q ss_pred CC------------------HHHHHHHHHHHHhcCCCeeEEEEcCCCC----CCCCCCChhhHHHhHHHHHHHHHHHHHH
Q psy13409 81 SS------------------LKSVRKCAQEILDNESAIHLLINNAGVM----MCPRQLTEDGYELQFATNHLGHYLFTLL 138 (330)
Q Consensus 81 s~------------------~~si~~l~~~i~~~~g~iDvlInnAG~~----~~~~~~~~~~~~~~l~vN~~g~~~l~~~ 138 (330)
++ +++++++++++.+.+|++|+||||||.. .+..+.+.++|++++++|+.+++.+++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~~ 163 (303)
T PLN02730 84 DTPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLLQH 163 (303)
T ss_pred CccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHHHH
Confidence 43 3489999999999999999999999753 2346789999999999999999999999
Q ss_pred HHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccccCCCcc-hhhHHhHHHHHHHHHHHHHHhcccccccccccCchhh
Q psy13409 139 LLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSAT-GAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEI 217 (330)
Q Consensus 139 ~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~ 217 (330)
++|.|.+ .|+||++||..+..+. +.+ ..|++||+|+++|+++||.|++.
T Consensus 164 ~~p~m~~--~G~II~isS~a~~~~~--------------p~~~~~Y~asKaAl~~l~~~la~El~~-------------- 213 (303)
T PLN02730 164 FGPIMNP--GGASISLTYIASERII--------------PGYGGGMSSAKAALESDTRVLAFEAGR-------------- 213 (303)
T ss_pred HHHHHhc--CCEEEEEechhhcCCC--------------CCCchhhHHHHHHHHHHHHHHHHHhCc--------------
Confidence 9999975 3999999998877663 433 57999999999999999999971
Q ss_pred cccccccchhhhhhhcccCCCCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhh
Q psy13409 218 LGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLF 295 (330)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~ 295 (330)
+ +|||||+|+||+|+|++...........+... .++++
T Consensus 214 -----------------------------------~---~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~pl~r-- 253 (303)
T PLN02730 214 -----------------------------------K---YKIRVNTISAGPLGSRAAKAIGFIDDMIEYSYANAPLQK-- 253 (303)
T ss_pred -----------------------------------C---CCeEEEEEeeCCccCchhhcccccHHHHHHHHhcCCCCC--
Confidence 2 58999999999999999765322111111111 13344
Q ss_pred ccChHHHHHHHHHhhccccccccCceeccc
Q psy13409 296 IKSPLQGAQTTLYCALDKKCERETGLYYAK 325 (330)
Q Consensus 296 ~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~ 325 (330)
+.+|+|+|.+++||+++ .++++||+.+..
T Consensus 254 ~~~peevA~~~~fLaS~-~a~~itG~~l~v 282 (303)
T PLN02730 254 ELTADEVGNAAAFLASP-LASAITGATIYV 282 (303)
T ss_pred CcCHHHHHHHHHHHhCc-cccCccCCEEEE
Confidence 78999999999999965 567999998753
|
|
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-37 Score=286.09 Aligned_cols=235 Identities=23% Similarity=0.314 Sum_probs=196.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh---------hHHHHHHHHHHHhhcccCCCCeEEEEEccCCCH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL---------EKAETAADDIRTSLKDVKDAGEVVIRQLDLSSL 83 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~---------~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~ 83 (330)
.++||++|||||++|||++++++|+++|++|++++|+. +.+++..+++.. .+.++.++.+|++++
T Consensus 3 ~l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~Dv~~~ 76 (286)
T PRK07791 3 LLDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVA------AGGEAVANGDDIADW 76 (286)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHh------cCCceEEEeCCCCCH
Confidence 47899999999999999999999999999999998876 666666666654 256788999999999
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC------CCeEEEEc
Q psy13409 84 KSVRKCAQEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA------PARIINLS 155 (330)
Q Consensus 84 ~si~~l~~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~------~g~IV~iS 155 (330)
++++++++.+.+.++++|++|||||.... ..+.+.++|++.+++|+.+++.+++.++|.|.++. .|+||++|
T Consensus 77 ~~v~~~~~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~is 156 (286)
T PRK07791 77 DGAANLVDAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTS 156 (286)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeC
Confidence 99999999999999999999999998653 36788899999999999999999999999997642 37999999
Q ss_pred CCCcccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhccc
Q psy13409 156 SLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDAN 235 (330)
Q Consensus 156 S~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (330)
|.++..+. +++..|++||+|+++|++++|.|++
T Consensus 157 S~~~~~~~--------------~~~~~Y~asKaal~~l~~~la~el~--------------------------------- 189 (286)
T PRK07791 157 SGAGLQGS--------------VGQGNYSAAKAGIAALTLVAAAELG--------------------------------- 189 (286)
T ss_pred chhhCcCC--------------CCchhhHHHHHHHHHHHHHHHHHHH---------------------------------
Confidence 99887774 6788999999999999999999998
Q ss_pred CCCCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH-HHhhhhhccChHHHHHHHHHhhcccc
Q psy13409 236 LQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY-QRVGGLFIKSPLQGAQTTLYCALDKK 314 (330)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~a~~~~~l~~~~~ 314 (330)
+ .|||||+|+|| ++|++...... .... .+.++.+..+|+|+|++++||+++ .
T Consensus 190 -----------------~---~gIrVn~v~Pg-~~T~~~~~~~~-----~~~~~~~~~~~~~~~pedva~~~~~L~s~-~ 242 (286)
T PRK07791 190 -----------------R---YGVTVNAIAPA-ARTRMTETVFA-----EMMAKPEEGEFDAMAPENVSPLVVWLGSA-E 242 (286)
T ss_pred -----------------H---hCeEEEEECCC-CCCCcchhhHH-----HHHhcCcccccCCCCHHHHHHHHHHHhCc-h
Confidence 6 79999999999 89987643211 0010 122222357999999999999966 5
Q ss_pred ccccCceecccCC
Q psy13409 315 CERETGLYYAKAD 327 (330)
Q Consensus 315 ~~~~~G~~~~~~~ 327 (330)
++++||+++...+
T Consensus 243 ~~~itG~~i~vdg 255 (286)
T PRK07791 243 SRDVTGKVFEVEG 255 (286)
T ss_pred hcCCCCcEEEEcC
Confidence 6799999886543
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=280.23 Aligned_cols=235 Identities=20% Similarity=0.241 Sum_probs=192.5
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
+.+++|+++||||++|||++++++|+++|++|++++|+.++++++.+++ +.++.++++|++++++++++++
T Consensus 2 ~~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~D~~~~~~~~~~~~ 72 (263)
T PRK06200 2 GWLHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRF---------GDHVLVVEGDVTSYADNQRAVD 72 (263)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---------CCcceEEEccCCCHHHHHHHHH
Confidence 3478999999999999999999999999999999999988766654432 3467889999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCC---CCCCChhh----HHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCC
Q psy13409 92 EILDNESAIHLLINNAGVMMC---PRQLTEDG----YELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDG 164 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~---~~~~~~~~----~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~ 164 (330)
++.+.++++|++|||||+... ..+.+.++ |++++++|+.+++.+++.++|.|.++ +|+||++||.++..+.
T Consensus 73 ~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~g~iv~~sS~~~~~~~- 150 (263)
T PRK06200 73 QTVDAFGKLDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKAS-GGSMIFTLSNSSFYPG- 150 (263)
T ss_pred HHHHhcCCCCEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhc-CCEEEEECChhhcCCC-
Confidence 999999999999999997532 23444444 88899999999999999999998765 5899999999887664
Q ss_pred CCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccc
Q psy13409 165 SMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYC 244 (330)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
++...|++||+|++.|++++|.|++
T Consensus 151 -------------~~~~~Y~~sK~a~~~~~~~la~el~------------------------------------------ 175 (263)
T PRK06200 151 -------------GGGPLYTASKHAVVGLVRQLAYELA------------------------------------------ 175 (263)
T ss_pred -------------CCCchhHHHHHHHHHHHHHHHHHHh------------------------------------------
Confidence 5667899999999999999999998
Q ss_pred cccccCCCCCCCCceeEEEeeCcccccCcccccCC---------CchhhHHHH--HHhhhhhccChHHHHHHHHHhhccc
Q psy13409 245 KNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDS---------IIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDK 313 (330)
Q Consensus 245 ~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~---------~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~ 313 (330)
++||||+|+||+|+|++...... .+...+... .++++ +.+|+|+|++++||+++.
T Consensus 176 ------------~~Irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r--~~~~~eva~~~~fl~s~~ 241 (263)
T PRK06200 176 ------------PKIRVNGVAPGGTVTDLRGPASLGQGETSISDSPGLADMIAAITPLQF--APQPEDHTGPYVLLASRR 241 (263)
T ss_pred ------------cCcEEEEEeCCccccCCcCccccCCCCcccccccchhHHhhcCCCCCC--CCCHHHHhhhhhheeccc
Confidence 45999999999999998643210 011111222 24444 899999999999999765
Q ss_pred cccccCceecccC
Q psy13409 314 KCERETGLYYAKA 326 (330)
Q Consensus 314 ~~~~~~G~~~~~~ 326 (330)
+++++||+.+...
T Consensus 242 ~~~~itG~~i~vd 254 (263)
T PRK06200 242 NSRALTGVVINAD 254 (263)
T ss_pred ccCcccceEEEEc
Confidence 3789999998654
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=275.37 Aligned_cols=235 Identities=26% Similarity=0.302 Sum_probs=192.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEe-cChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMAC-RSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~-R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
+++|+++||||++|||++++++|+++|++|+++. |+.+.+++...++.. .+.++..+.+|+++.++++.++++
T Consensus 2 ~~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~D~~~~~~~~~~~~~ 75 (252)
T PRK12747 2 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQS------NGGSAFSIGANLESLHGVEALYSS 75 (252)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHh------cCCceEEEecccCCHHHHHHHHHH
Confidence 5789999999999999999999999999998875 566666666666654 245678899999999999999988
Q ss_pred HHh----cCC--CeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCC
Q psy13409 93 ILD----NES--AIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDG 164 (330)
Q Consensus 93 i~~----~~g--~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~ 164 (330)
+.+ .++ ++|++|||||.... ..+.+.++|++++++|+.+++.+++.++|.|.+ .|+||++||.++..+.
T Consensus 76 ~~~~~~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~--~g~iv~isS~~~~~~~- 152 (252)
T PRK12747 76 LDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRD--NSRIINISSAATRISL- 152 (252)
T ss_pred HHHHhhhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhc--CCeEEEECCcccccCC-
Confidence 765 233 89999999997543 357788999999999999999999999999865 4899999999887664
Q ss_pred CCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccc
Q psy13409 165 SMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYC 244 (330)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
+....|++||+|+++++++++.|++
T Consensus 153 -------------~~~~~Y~~sKaa~~~~~~~la~e~~------------------------------------------ 177 (252)
T PRK12747 153 -------------PDFIAYSMTKGAINTMTFTLAKQLG------------------------------------------ 177 (252)
T ss_pred -------------CCchhHHHHHHHHHHHHHHHHHHHh------------------------------------------
Confidence 5678999999999999999999998
Q ss_pred cccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCcee
Q psy13409 245 KNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLY 322 (330)
Q Consensus 245 ~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~ 322 (330)
+ .||+||+|+||+|+|++............... .+.++ +.+|+|+|++++||+++ .++++||+.
T Consensus 178 --------~---~girvn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~dva~~~~~l~s~-~~~~~~G~~ 243 (252)
T PRK12747 178 --------A---RGITVNAILPGFIKTDMNAELLSDPMMKQYATTISAFNR--LGEVEDIADTAAFLASP-DSRWVTGQL 243 (252)
T ss_pred --------H---cCCEEEEEecCCccCchhhhcccCHHHHHHHHhcCcccC--CCCHHHHHHHHHHHcCc-cccCcCCcE
Confidence 5 79999999999999998765432221111111 13343 88999999999999865 567999998
Q ss_pred cccC
Q psy13409 323 YAKA 326 (330)
Q Consensus 323 ~~~~ 326 (330)
+.-.
T Consensus 244 i~vd 247 (252)
T PRK12747 244 IDVS 247 (252)
T ss_pred EEec
Confidence 7644
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=275.40 Aligned_cols=241 Identities=24% Similarity=0.289 Sum_probs=204.0
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
++++||++|||||+++||++++++|+++|++|++++|+.+++++..+.+.. .+.++.++.+|++++++++++++
T Consensus 6 ~~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~------~~~~~~~~~~D~~~~~~~~~~~~ 79 (255)
T PRK07523 6 FDLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKG------QGLSAHALAFDVTDHDAVRAAID 79 (255)
T ss_pred cCCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh------cCceEEEEEccCCCHHHHHHHHH
Confidence 458999999999999999999999999999999999998887777666654 24678999999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 92 EILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
.+.+.++++|++|||+|...+ ..+.+.+++++++++|+.+++++++.+.+.|.+++.|+||++||..+..+.
T Consensus 80 ~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~------ 153 (255)
T PRK07523 80 AFEAEIGPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQSALAR------ 153 (255)
T ss_pred HHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccchhccCC------
Confidence 999999999999999998643 256788999999999999999999999999988778999999998766553
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
+.+..|+++|++++.++++++.|++
T Consensus 154 --------~~~~~y~~sK~a~~~~~~~~a~e~~----------------------------------------------- 178 (255)
T PRK07523 154 --------PGIAPYTATKGAVGNLTKGMATDWA----------------------------------------------- 178 (255)
T ss_pred --------CCCccHHHHHHHHHHHHHHHHHHhh-----------------------------------------------
Confidence 6788999999999999999999998
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+ .||+||+|+||+++|++...........++........++.+|+|+|++++||+++ .++++||+.|...
T Consensus 179 ---~---~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~-~~~~~~G~~i~~~ 248 (255)
T PRK07523 179 ---K---HGLQCNAIAPGYFDTPLNAALVADPEFSAWLEKRTPAGRWGKVEELVGACVFLASD-ASSFVNGHVLYVD 248 (255)
T ss_pred ---H---hCeEEEEEEECcccCchhhhhccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCc-hhcCccCcEEEEC
Confidence 5 79999999999999998765433222333333322223388999999999999866 5679999987543
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=277.73 Aligned_cols=233 Identities=19% Similarity=0.184 Sum_probs=194.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
++++||||++|||++++++|+++|++|++++|+.+.+++..+++++ ..++.++.+|++++++++++++++.+.
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~-------~~~~~~~~~Dv~d~~~~~~~~~~~~~~ 73 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKE-------YGEVYAVKADLSDKDDLKNLVKEAWEL 73 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh-------cCCceEEEcCCCCHHHHHHHHHHHHHh
Confidence 4799999999999999999999999999999999888888777754 236788999999999999999999999
Q ss_pred CCCeeEEEEcCCCCC----CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhh-hCCCeEEEEcCCCcccCCCCCccccc
Q psy13409 97 ESAIHLLINNAGVMM----CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIK-SAPARIINLSSLAHTWGDGSMHFEDI 171 (330)
Q Consensus 97 ~g~iDvlInnAG~~~----~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~-~~~g~IV~iSS~~~~~~~~~~~~~~~ 171 (330)
++++|++|||||... +..+.+.++|.+.+++|+.+++.+++.+++.|.+ ++.|+||++||..+..+.
T Consensus 74 ~g~id~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~~~~~~~-------- 145 (259)
T PRK08340 74 LGGIDALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSVSVKEPM-------- 145 (259)
T ss_pred cCCCCEEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCcccCCCC--------
Confidence 999999999999753 2356778889999999999999999999998864 457899999998876553
Q ss_pred ccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCC
Q psy13409 172 NLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHP 251 (330)
Q Consensus 172 ~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (330)
+....|+++|+|+++|+++||.|++
T Consensus 146 ------~~~~~y~~sKaa~~~~~~~la~e~~------------------------------------------------- 170 (259)
T PRK08340 146 ------PPLVLADVTRAGLVQLAKGVSRTYG------------------------------------------------- 170 (259)
T ss_pred ------CCchHHHHHHHHHHHHHHHHHHHhC-------------------------------------------------
Confidence 6678999999999999999999998
Q ss_pred CCCCCCceeEEEeeCcccccCcccccCC--------Cch--hhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccC
Q psy13409 252 PGANITNVNTYAVHPGVVDTELSRHFDS--------IIP--GTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERET 319 (330)
Q Consensus 252 ~~~~~~~i~v~~v~pG~v~t~~~~~~~~--------~~~--~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~ 319 (330)
+ .||+||+|+||+|+|++.+.... ..+ ..+... .++++ +.+|+|+|++++||+++ .++++|
T Consensus 171 -~---~gI~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r--~~~p~dva~~~~fL~s~-~~~~it 243 (259)
T PRK08340 171 -G---KGIRAYTVLLGSFDTPGARENLARIAEERGVSFEETWEREVLERTPLKR--TGRWEELGSLIAFLLSE-NAEYML 243 (259)
T ss_pred -C---CCEEEEEeccCcccCccHHHHHHhhhhccCCchHHHHHHHHhccCCccC--CCCHHHHHHHHHHHcCc-cccccc
Confidence 6 89999999999999998753211 000 011111 23444 88999999999999965 578999
Q ss_pred ceecccC
Q psy13409 320 GLYYAKA 326 (330)
Q Consensus 320 G~~~~~~ 326 (330)
|+.+...
T Consensus 244 G~~i~vd 250 (259)
T PRK08340 244 GSTIVFD 250 (259)
T ss_pred CceEeec
Confidence 9987544
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=277.45 Aligned_cols=226 Identities=25% Similarity=0.274 Sum_probs=190.4
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
.+++||++|||||++|||++++++|+++|++|++++|+... ..++.++.||++++++++++++
T Consensus 2 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~-----------------~~~~~~~~~D~~~~~~i~~~~~ 64 (258)
T PRK06398 2 LGLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPS-----------------YNDVDYFKVDVSNKEQVIKGID 64 (258)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCccc-----------------cCceEEEEccCCCHHHHHHHHH
Confidence 46899999999999999999999999999999999998642 2257889999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 92 EILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
++.+.++++|++|||||.... ..+.+.++|++++++|+.+++.+++.++|.|.+++.|+||++||..+..+.
T Consensus 65 ~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~------ 138 (258)
T PRK06398 65 YVISKYGRIDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGVIINIASVQSFAVT------ 138 (258)
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeCcchhccCC------
Confidence 999999999999999998543 367789999999999999999999999999988778999999998876653
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
+.+.+|++||+|+++|+++++.|+.
T Consensus 139 --------~~~~~Y~~sKaal~~~~~~la~e~~----------------------------------------------- 163 (258)
T PRK06398 139 --------RNAAAYVTSKHAVLGLTRSIAVDYA----------------------------------------------- 163 (258)
T ss_pred --------CCCchhhhhHHHHHHHHHHHHHHhC-----------------------------------------------
Confidence 6788999999999999999999997
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCC-----Cchh-hHHH---H--HHhhhhhccChHHHHHHHHHhhcccccccc
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDS-----IIPG-TAWL---Y--QRVGGLFIKSPLQGAQTTLYCALDKKCERE 318 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~-----~~~~-~~~~---~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~ 318 (330)
+ +|+||+|+||+|+|++...... .... .+.. . .++++ +.+|+|+|++++||+++ .+.++
T Consensus 164 ---~----~i~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~eva~~~~~l~s~-~~~~~ 233 (258)
T PRK06398 164 ---P----TIRCVAVCPGSIRTPLLEWAAELEVGKDPEHVERKIREWGEMHPMKR--VGKPEEVAYVVAFLASD-LASFI 233 (258)
T ss_pred ---C----CCEEEEEecCCccchHHhhhhhccccCChhhhHHHHHhhhhcCCcCC--CcCHHHHHHHHHHHcCc-ccCCC
Confidence 3 5999999999999998754321 1110 0000 1 23344 78999999999999865 56799
Q ss_pred Cceeccc
Q psy13409 319 TGLYYAK 325 (330)
Q Consensus 319 ~G~~~~~ 325 (330)
||+.+..
T Consensus 234 ~G~~i~~ 240 (258)
T PRK06398 234 TGECVTV 240 (258)
T ss_pred CCcEEEE
Confidence 9998754
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-36 Score=272.03 Aligned_cols=238 Identities=23% Similarity=0.313 Sum_probs=195.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
+++||+++||||++|||.+++++|+++|++|++++|+.. .+..+.+++ .+.++.++.+|++++++++.++++
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~--~~~~~~~~~------~~~~~~~~~~D~~~~~~~~~~~~~ 73 (248)
T TIGR01832 2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEP--SETQQQVEA------LGRRFLSLTADLSDIEAIKALVDS 73 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchH--HHHHHHHHh------cCCceEEEECCCCCHHHHHHHHHH
Confidence 578999999999999999999999999999999999752 334444433 246789999999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCCccc
Q psy13409 93 ILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
+.+.++++|++|||||...+. .+.+.+++++.+++|+.+++.+++.+++.|.+++ .|+||++||..+..+.
T Consensus 74 ~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~------ 147 (248)
T TIGR01832 74 AVEEFGHIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSFQGG------ 147 (248)
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhccCC------
Confidence 999889999999999986532 5677889999999999999999999999998765 6899999998776553
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
+....|++||++++++++++++|+.
T Consensus 148 --------~~~~~Y~~sKaa~~~~~~~la~e~~----------------------------------------------- 172 (248)
T TIGR01832 148 --------IRVPSYTASKHGVAGLTKLLANEWA----------------------------------------------- 172 (248)
T ss_pred --------CCCchhHHHHHHHHHHHHHHHHHhC-----------------------------------------------
Confidence 4567899999999999999999998
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+ .||+||+|+||+|+|++.+.........+.........++.+|+|+|++++||+++ .+.+++|+++...
T Consensus 173 ---~---~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~-~~~~~~G~~i~~d 242 (248)
T TIGR01832 173 ---A---KGINVNAIAPGYMATNNTQALRADEDRNAAILERIPAGRWGTPDDIGGPAVFLASS-ASDYVNGYTLAVD 242 (248)
T ss_pred ---c---cCcEEEEEEECcCcCcchhccccChHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCc-cccCcCCcEEEeC
Confidence 5 79999999999999998765432211111112222223488999999999999965 4679999998654
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=272.99 Aligned_cols=241 Identities=22% Similarity=0.218 Sum_probs=201.8
Q ss_pred CCCCCCEEEEEcCCC-chHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNT-GIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 12 ~~~~gk~aLITGas~-gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
..+++|+++||||+| |||+++++.|+++|++|++++|+.+++++..+++++.. ...++.++.+|+++++++++++
T Consensus 13 ~~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~ 88 (262)
T PRK07831 13 GLLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAEL----GLGRVEAVVCDVTSEAQVDALI 88 (262)
T ss_pred cccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhc----CCceEEEEEccCCCHHHHHHHH
Confidence 357899999999985 99999999999999999999999988887777776532 2357889999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCCc
Q psy13409 91 QEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~~ 167 (330)
+.+.+.++++|++|||||...+ ..+.+.++|++.+++|+.+++.+++.++|.|.+.. .|+||++||..+..+.
T Consensus 89 ~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~~~~~~---- 164 (262)
T PRK07831 89 DAAVERLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVLGWRAQ---- 164 (262)
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCCC----
Confidence 9999989999999999997543 25678899999999999999999999999998776 7899999998876653
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
+....|+++|+|++++++++|.|+.
T Consensus 165 ----------~~~~~Y~~sKaal~~~~~~la~e~~--------------------------------------------- 189 (262)
T PRK07831 165 ----------HGQAHYAAAKAGVMALTRCSALEAA--------------------------------------------- 189 (262)
T ss_pred ----------CCCcchHHHHHHHHHHHHHHHHHhC---------------------------------------------
Confidence 5678899999999999999999998
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCceeccc
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAK 325 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~ 325 (330)
+ .||+||+|+||+++|++........ ..+... .++++ +.+|+|+|+.++||+++ .++++||+.+.-
T Consensus 190 -----~---~gI~v~~i~Pg~~~t~~~~~~~~~~-~~~~~~~~~~~~r--~~~p~~va~~~~~l~s~-~~~~itG~~i~v 257 (262)
T PRK07831 190 -----E---YGVRINAVAPSIAMHPFLAKVTSAE-LLDELAAREAFGR--AAEPWEVANVIAFLASD-YSSYLTGEVVSV 257 (262)
T ss_pred -----c---cCeEEEEEeeCCccCcccccccCHH-HHHHHHhcCCCCC--CcCHHHHHHHHHHHcCc-hhcCcCCceEEe
Confidence 6 7999999999999999875432211 111111 23444 88999999999999865 568999999865
Q ss_pred CC
Q psy13409 326 AD 327 (330)
Q Consensus 326 ~~ 327 (330)
..
T Consensus 258 ~~ 259 (262)
T PRK07831 258 SS 259 (262)
T ss_pred CC
Confidence 43
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=271.98 Aligned_cols=244 Identities=25% Similarity=0.278 Sum_probs=205.3
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
+.+++||+++||||++|||+++++.|+++|++|++++|+.+.+++..+++.... .+.++.++.+|+++++++++++
T Consensus 4 ~~~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~~Dl~~~~~~~~~~ 79 (257)
T PRK09242 4 RWRLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEF----PEREVHGLAADVSDDEDRRAIL 79 (257)
T ss_pred ccccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhC----CCCeEEEEECCCCCHHHHHHHH
Confidence 346889999999999999999999999999999999999988888777775532 3568999999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 91 QEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
+.+.+.++++|++|||+|.... ..+.+.++++..+++|+.+++.++++++|.|.+++.++||++||..+..+.
T Consensus 80 ~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~~~----- 154 (257)
T PRK09242 80 DWVEDHWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSVSGLTHV----- 154 (257)
T ss_pred HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECccccCCCC-----
Confidence 9999999999999999997542 356788999999999999999999999999988777999999998877664
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
+..+.|+++|++++.+++++|.|+.
T Consensus 155 ---------~~~~~Y~~sK~a~~~~~~~la~e~~---------------------------------------------- 179 (257)
T PRK09242 155 ---------RSGAPYGMTKAALLQMTRNLAVEWA---------------------------------------------- 179 (257)
T ss_pred ---------CCCcchHHHHHHHHHHHHHHHHHHH----------------------------------------------
Confidence 6678899999999999999999998
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
. .||+||+|+||+|+|++...........+.........++.+|+|+|++++||+++ .+.+++|+.+.-.
T Consensus 180 ----~---~~i~v~~i~Pg~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~-~~~~~~g~~i~~~ 249 (257)
T PRK09242 180 ----E---DGIRVNAVAPWYIRTPLTSGPLSDPDYYEQVIERTPMRRVGEPEEVAAAVAFLCMP-AASYITGQCIAVD 249 (257)
T ss_pred ----H---hCeEEEEEEECCCCCcccccccCChHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCc-ccccccCCEEEEC
Confidence 5 79999999999999999765543332222222222222378999999999999965 5568899987543
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=279.65 Aligned_cols=238 Identities=23% Similarity=0.247 Sum_probs=194.7
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh--hHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL--EKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~--~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
.++++|++|||||++|||++++++|+++|++|++++|+. +..+++.+.+.. .+.++.++.+|+++++++.++
T Consensus 45 ~~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Dl~~~~~~~~~ 118 (294)
T PRK07985 45 GRLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEE------CGRKAVLLPGDLSDEKFARSL 118 (294)
T ss_pred CccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHH------cCCeEEEEEccCCCHHHHHHH
Confidence 458999999999999999999999999999999988753 344444444433 256788999999999999999
Q ss_pred HHHHHhcCCCeeEEEEcCCCCC---CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCC
Q psy13409 90 AQEILDNESAIHLLINNAGVMM---CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSM 166 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~---~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~ 166 (330)
++++.+.++++|++|||||... +..+.+.++|++++++|+.+++.+++.++|.|.+ .++||++||..+..+.
T Consensus 119 ~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~--~g~iv~iSS~~~~~~~--- 193 (294)
T PRK07985 119 VHEAHKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPK--GASIITTSSIQAYQPS--- 193 (294)
T ss_pred HHHHHHHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhc--CCEEEEECCchhccCC---
Confidence 9999999999999999999753 2357789999999999999999999999999864 4899999999876663
Q ss_pred cccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccc
Q psy13409 167 HFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKN 246 (330)
Q Consensus 167 ~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (330)
+...+|+++|+|+++++++++.|++
T Consensus 194 -----------~~~~~Y~asKaal~~l~~~la~el~-------------------------------------------- 218 (294)
T PRK07985 194 -----------PHLLDYAATKAAILNYSRGLAKQVA-------------------------------------------- 218 (294)
T ss_pred -----------CCcchhHHHHHHHHHHHHHHHHHHh--------------------------------------------
Confidence 5678999999999999999999998
Q ss_pred cccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCceecc
Q psy13409 247 VLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYA 324 (330)
Q Consensus 247 ~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~ 324 (330)
+ .||+||+|+||+|+|++...........+... .++++ +.+|+|+|++++||+++ .++++||+.+.
T Consensus 219 ------~---~gIrvn~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~r--~~~pedva~~~~fL~s~-~~~~itG~~i~ 286 (294)
T PRK07985 219 ------E---KGIRVNIVAPGPIWTALQISGGQTQDKIPQFGQQTPMKR--AGQPAELAPVYVYLASQ-ESSYVTAEVHG 286 (294)
T ss_pred ------H---hCcEEEEEECCcCccccccccCCCHHHHHHHhccCCCCC--CCCHHHHHHHHHhhhCh-hcCCccccEEe
Confidence 5 79999999999999998533211111112222 23344 78999999999999965 56799999886
Q ss_pred cCC
Q psy13409 325 KAD 327 (330)
Q Consensus 325 ~~~ 327 (330)
..+
T Consensus 287 vdg 289 (294)
T PRK07985 287 VCG 289 (294)
T ss_pred eCC
Confidence 543
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=276.28 Aligned_cols=234 Identities=22% Similarity=0.269 Sum_probs=190.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
++++|+++||||++|||++++++|+++|++|++++|+.+.++++.+. .+.++.++.+|+++.+++++++++
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~---------~~~~~~~~~~D~~~~~~~~~~~~~ 72 (262)
T TIGR03325 2 RLKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAA---------HGDAVVGVEGDVRSLDDHKEAVAR 72 (262)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhh---------cCCceEEEEeccCCHHHHHHHHHH
Confidence 57899999999999999999999999999999999998766554321 245688999999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCC---CCCCC----hhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCC
Q psy13409 93 ILDNESAIHLLINNAGVMMC---PRQLT----EDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGS 165 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~---~~~~~----~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~ 165 (330)
+.+.++++|++|||||.... ..+.+ .++|++.+++|+.+++.+++.++|.|.+. +|+||+++|..+..+.
T Consensus 73 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~g~iv~~sS~~~~~~~-- 149 (262)
T TIGR03325 73 CVAAFGKIDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVAS-RGSVIFTISNAGFYPN-- 149 (262)
T ss_pred HHHHhCCCCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhc-CCCEEEEeccceecCC--
Confidence 99999999999999997532 12222 24789999999999999999999999765 4899999998877664
Q ss_pred CcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccc
Q psy13409 166 MHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCK 245 (330)
Q Consensus 166 ~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (330)
+....|++||+|+++|++++|.|++
T Consensus 150 ------------~~~~~Y~~sKaa~~~l~~~la~e~~------------------------------------------- 174 (262)
T TIGR03325 150 ------------GGGPLYTAAKHAVVGLVKELAFELA------------------------------------------- 174 (262)
T ss_pred ------------CCCchhHHHHHHHHHHHHHHHHhhc-------------------------------------------
Confidence 5667899999999999999999998
Q ss_pred ccccCCCCCCCCceeEEEeeCcccccCcccccCC---C-----chhhHHH--HHHhhhhhccChHHHHHHHHHhhccccc
Q psy13409 246 NVLFHPPGANITNVNTYAVHPGVVDTELSRHFDS---I-----IPGTAWL--YQRVGGLFIKSPLQGAQTTLYCALDKKC 315 (330)
Q Consensus 246 ~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~---~-----~~~~~~~--~~~~~~~~~~~~~e~a~~~~~l~~~~~~ 315 (330)
+ . ||||+|+||+|+|++...... . .+..+.. ..++++ +.+|+|+|++++||++++.+
T Consensus 175 -------~---~-irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r--~~~p~eva~~~~~l~s~~~~ 241 (262)
T TIGR03325 175 -------P---Y-VRVNGVAPGGMSSDLRGPKSLGMADKSISTVPLGDMLKSVLPIGR--MPDAEEYTGAYVFFATRGDT 241 (262)
T ss_pred -------c---C-eEEEEEecCCCcCCCccccccccccccccccchhhhhhhcCCCCC--CCChHHhhhheeeeecCCCc
Confidence 4 4 999999999999998653210 0 0111111 134555 89999999999999987566
Q ss_pred cccCceecccC
Q psy13409 316 ERETGLYYAKA 326 (330)
Q Consensus 316 ~~~~G~~~~~~ 326 (330)
.++||+.+...
T Consensus 242 ~~~tG~~i~vd 252 (262)
T TIGR03325 242 VPATGAVLNYD 252 (262)
T ss_pred ccccceEEEec
Confidence 78999988654
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=270.84 Aligned_cols=237 Identities=22% Similarity=0.238 Sum_probs=194.6
Q ss_pred CCCCCCEEEEEcCC--CchHHHHHHHHHHCCCEEEEEecC-----------hhHHHHHHHHHHHhhcccCCCCeEEEEEc
Q psy13409 12 TRLDGKTAIVTGSN--TGIGKCTANELAKRGARVIMACRS-----------LEKAETAADDIRTSLKDVKDAGEVVIRQL 78 (330)
Q Consensus 12 ~~~~gk~aLITGas--~gIG~aia~~L~~~G~~Vil~~R~-----------~~~l~~~~~~l~~~~~~~~~~~~v~~i~~ 78 (330)
.+|+||+++||||+ +|||++++++|+++|++|++++|+ .+.+.+..+++++ .+.++.++.+
T Consensus 2 ~~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~ 75 (256)
T PRK12859 2 NQLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLK------NGVKVSSMEL 75 (256)
T ss_pred CCcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHh------cCCeEEEEEc
Confidence 46899999999998 499999999999999999998643 2223333344443 3678899999
Q ss_pred cCCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcC
Q psy13409 79 DLSSLKSVRKCAQEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSS 156 (330)
Q Consensus 79 Dls~~~si~~l~~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS 156 (330)
|+++.++++++++++.+.++++|++|||||.... ..+.+.++|+..+++|+.+++.+.+.+++.|.+++.|+||++||
T Consensus 76 D~~~~~~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS 155 (256)
T PRK12859 76 DLTQNDAPKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKSGGRIINMTS 155 (256)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEEcc
Confidence 9999999999999999999999999999997643 36788999999999999999999999999998777899999999
Q ss_pred CCcccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccC
Q psy13409 157 LAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANL 236 (330)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (330)
..+..+. +++..|+++|+|+++|+++++.+++
T Consensus 156 ~~~~~~~--------------~~~~~Y~~sK~a~~~l~~~la~~~~---------------------------------- 187 (256)
T PRK12859 156 GQFQGPM--------------VGELAYAATKGAIDALTSSLAAEVA---------------------------------- 187 (256)
T ss_pred cccCCCC--------------CCchHHHHHHHHHHHHHHHHHHHhh----------------------------------
Confidence 8876553 6788999999999999999999998
Q ss_pred CCCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhcccccc
Q psy13409 237 QTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCE 316 (330)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~ 316 (330)
+ .||+||+|+||+|+|++.... ..+.+.......++.+|+|+|+.++||+++ .++
T Consensus 188 ----------------~---~~i~v~~v~PG~i~t~~~~~~-----~~~~~~~~~~~~~~~~~~d~a~~~~~l~s~-~~~ 242 (256)
T PRK12859 188 ----------------H---LGITVNAINPGPTDTGWMTEE-----IKQGLLPMFPFGRIGEPKDAARLIKFLASE-EAE 242 (256)
T ss_pred ----------------h---hCeEEEEEEEccccCCCCCHH-----HHHHHHhcCCCCCCcCHHHHHHHHHHHhCc-ccc
Confidence 5 799999999999999864321 111122212222378999999999999866 567
Q ss_pred ccCceecccCC
Q psy13409 317 RETGLYYAKAD 327 (330)
Q Consensus 317 ~~~G~~~~~~~ 327 (330)
++||+++....
T Consensus 243 ~~~G~~i~~dg 253 (256)
T PRK12859 243 WITGQIIHSEG 253 (256)
T ss_pred CccCcEEEeCC
Confidence 99999987654
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=271.74 Aligned_cols=244 Identities=20% Similarity=0.282 Sum_probs=204.6
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
..+++++|+++||||++|||++++++|+++|++|++++|+.+++++..+.+.. .+.++.++.+|++++++++++
T Consensus 4 ~~~~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Dl~~~~~~~~~ 77 (265)
T PRK07097 4 NLFSLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRE------LGIEAHGYVCDVTDEDGVQAM 77 (265)
T ss_pred cccCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh------cCCceEEEEcCCCCHHHHHHH
Confidence 34578999999999999999999999999999999999999888877777654 256789999999999999999
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCc
Q psy13409 90 AQEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~ 167 (330)
++++.+.++++|++|||||.... ..+.+.+++++++++|+.+++.+++.+++.|.+++.++||++||..+..+.
T Consensus 78 ~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~---- 153 (265)
T PRK07097 78 VSQIEKEVGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSMMSELGR---- 153 (265)
T ss_pred HHHHHHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCcEEEEEcCccccCCC----
Confidence 99999999999999999998653 257788999999999999999999999999988778999999998887764
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
+.+..|+++|++++.+++++++++.
T Consensus 154 ----------~~~~~Y~~sKaal~~l~~~la~e~~--------------------------------------------- 178 (265)
T PRK07097 154 ----------ETVSAYAAAKGGLKMLTKNIASEYG--------------------------------------------- 178 (265)
T ss_pred ----------CCCccHHHHHHHHHHHHHHHHHHhh---------------------------------------------
Confidence 5678999999999999999999998
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCC------CchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCce
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDS------IIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGL 321 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~ 321 (330)
+ .||+||+|+||+|+|++...... .....++........++.+|+|+|++++||+++ .+.+++|+
T Consensus 179 -----~---~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~-~~~~~~g~ 249 (265)
T PRK07097 179 -----E---ANIQCNGIGPGYIATPQTAPLRELQADGSRHPFDQFIIAKTPAARWGDPEDLAGPAVFLASD-ASNFVNGH 249 (265)
T ss_pred -----h---cCceEEEEEeccccccchhhhhhccccccchhHHHHHHhcCCccCCcCHHHHHHHHHHHhCc-ccCCCCCC
Confidence 5 79999999999999998754432 111112222211122378999999999999866 45689999
Q ss_pred ecccCC
Q psy13409 322 YYAKAD 327 (330)
Q Consensus 322 ~~~~~~ 327 (330)
.+....
T Consensus 250 ~~~~~g 255 (265)
T PRK07097 250 ILYVDG 255 (265)
T ss_pred EEEECC
Confidence 876543
|
|
| >KOG1208|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=280.13 Aligned_cols=256 Identities=50% Similarity=0.719 Sum_probs=220.7
Q ss_pred ccCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHH
Q psy13409 8 CTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVR 87 (330)
Q Consensus 8 ~~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~ 87 (330)
.+...++.|++++||||++|||+++|++|+.+|++|++++|+.++.++..+++++.. ...++.++.||+++.++|.
T Consensus 27 ~~~~~~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~----~~~~i~~~~lDLssl~SV~ 102 (314)
T KOG1208|consen 27 VTHGIDLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGK----ANQKIRVIQLDLSSLKSVR 102 (314)
T ss_pred eeccccCCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC----CCCceEEEECCCCCHHHHH
Confidence 355567899999999999999999999999999999999999999999999888732 5788999999999999999
Q ss_pred HHHHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCc
Q psy13409 88 KCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 88 ~l~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~ 167 (330)
+++++.++.++++|++|||||+..++...+.|.++.++.+|++|+|.+++.++|.|+....+|||++||..+ + ....
T Consensus 103 ~fa~~~~~~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~~RIV~vsS~~~--~-~~~~ 179 (314)
T KOG1208|consen 103 KFAEEFKKKEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAPSRIVNVSSILG--G-GKID 179 (314)
T ss_pred HHHHHHHhcCCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCCCCEEEEcCccc--c-Cccc
Confidence 999999999999999999999999888888899999999999999999999999999887799999999887 2 1223
Q ss_pred ccccccccC--CCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccc
Q psy13409 168 FEDINLEKG--YSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCK 245 (330)
Q Consensus 168 ~~~~~~~~~--~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (330)
..+++.... +....+|+.||.++..+++.|++++.
T Consensus 180 ~~~l~~~~~~~~~~~~~Y~~SKla~~l~~~eL~k~l~------------------------------------------- 216 (314)
T KOG1208|consen 180 LKDLSGEKAKLYSSDAAYALSKLANVLLANELAKRLK------------------------------------------- 216 (314)
T ss_pred hhhccchhccCccchhHHHHhHHHHHHHHHHHHHHhh-------------------------------------------
Confidence 334444333 55666799999999999999999986
Q ss_pred ccccCCCCCCCCceeEEEeeCcccccC-cccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecc
Q psy13409 246 NVLFHPPGANITNVNTYAVHPGVVDTE-LSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYA 324 (330)
Q Consensus 246 ~~~~~~~~~~~~~i~v~~v~pG~v~t~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~ 324 (330)
.||.+++++||+|.|+ +++ ......++...+......++++.|++++|++.+++...++|.|++
T Consensus 217 -----------~~V~~~~~hPG~v~t~~l~r----~~~~~~~l~~~l~~~~~ks~~~ga~t~~~~a~~p~~~~~sg~y~~ 281 (314)
T KOG1208|consen 217 -----------KGVTTYSVHPGVVKTTGLSR----VNLLLRLLAKKLSWPLTKSPEQGAATTCYAALSPELEGVSGKYFE 281 (314)
T ss_pred -----------cCceEEEECCCcccccceec----chHHHHHHHHHHHHHhccCHHHHhhheehhccCccccCccccccc
Confidence 5999999999999999 666 233444455556555578999999999999999999999999987
Q ss_pred cCCC
Q psy13409 325 KADL 328 (330)
Q Consensus 325 ~~~~ 328 (330)
....
T Consensus 282 d~~~ 285 (314)
T KOG1208|consen 282 DCAI 285 (314)
T ss_pred cccc
Confidence 6643
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=271.74 Aligned_cols=238 Identities=24% Similarity=0.302 Sum_probs=196.4
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
++++++|+++||||++|||+++++.|+++|++|++++|+.+++++..+++... .+.++.++.+|+++++++++++
T Consensus 2 ~~~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~~D~~~~~~~~~~~ 76 (259)
T PRK06125 2 DLHLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAA-----HGVDVAVHALDLSSPEAREQLA 76 (259)
T ss_pred CcCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhh-----cCCceEEEEecCCCHHHHHHHH
Confidence 34689999999999999999999999999999999999998888877777653 2567889999999999998887
Q ss_pred HHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 91 QEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
+. ++++|++|||+|.... ..+.+.++|+.++++|+.+++.++++++|.|.+++.|+||++||..+..+.
T Consensus 77 ~~----~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~iss~~~~~~~----- 147 (259)
T PRK06125 77 AE----AGDIDILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARGSGVIVNVIGAAGENPD----- 147 (259)
T ss_pred HH----hCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEecCccccCCC-----
Confidence 64 4789999999997643 367889999999999999999999999999988777899999998876553
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
+.+..|+++|+|+++++++++.|+.
T Consensus 148 ---------~~~~~y~ask~al~~~~~~la~e~~---------------------------------------------- 172 (259)
T PRK06125 148 ---------ADYICGSAGNAALMAFTRALGGKSL---------------------------------------------- 172 (259)
T ss_pred ---------CCchHhHHHHHHHHHHHHHHHHHhC----------------------------------------------
Confidence 5678899999999999999999998
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCC--------CchhhHHHH--HHhhhhhccChHHHHHHHHHhhcccccccc
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDS--------IIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERE 318 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~--------~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~ 318 (330)
+ .||+||+|+||+|+|++...... .....+... .++++ +.+|+|+|++++||+++ .++++
T Consensus 173 ----~---~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~va~~~~~l~~~-~~~~~ 242 (259)
T PRK06125 173 ----D---DGVRVVGVNPGPVATDRMLTLLKGRARAELGDESRWQELLAGLPLGR--PATPEEVADLVAFLASP-RSGYT 242 (259)
T ss_pred ----c---cCeEEEEEecCccccHHHHHHHHhhhhcccCCHHHHHHHhccCCcCC--CcCHHHHHHHHHHHcCc-hhccc
Confidence 6 79999999999999996543210 111111111 23343 78999999999999854 57899
Q ss_pred CceecccCC
Q psy13409 319 TGLYYAKAD 327 (330)
Q Consensus 319 ~G~~~~~~~ 327 (330)
||+.+.-.+
T Consensus 243 ~G~~i~vdg 251 (259)
T PRK06125 243 SGTVVTVDG 251 (259)
T ss_pred cCceEEecC
Confidence 999986543
|
|
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=271.93 Aligned_cols=235 Identities=24% Similarity=0.232 Sum_probs=193.3
Q ss_pred EEEEEcCCCchHHHHHHHHHH----CCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 18 TAIVTGSNTGIGKCTANELAK----RGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~----~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
+++||||++|||++++++|++ .|++|++++|+.+.+++..++++... .+.++.++.+|+++.++++++++.+
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~~----~~~~v~~~~~Dl~~~~~v~~~~~~~ 77 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAER----SGLRVVRVSLDLGAEAGLEQLLKAL 77 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhcC----CCceEEEEEeccCCHHHHHHHHHHH
Confidence 689999999999999999997 79999999999998888877776421 2457899999999999999999999
Q ss_pred HhcCCC----eeEEEEcCCCCCCC----CC-CChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC--CCeEEEEcCCCcccC
Q psy13409 94 LDNESA----IHLLINNAGVMMCP----RQ-LTEDGYELQFATNHLGHYLFTLLLLPRIIKSA--PARIINLSSLAHTWG 162 (330)
Q Consensus 94 ~~~~g~----iDvlInnAG~~~~~----~~-~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~--~g~IV~iSS~~~~~~ 162 (330)
.+.++. .|++|||||..... .+ .+.+++++.+++|+.+++.+++.++|.|.+++ .++||++||..+..+
T Consensus 78 ~~~~g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~~~~~~ 157 (256)
T TIGR01500 78 RELPRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAIQP 157 (256)
T ss_pred HhccccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCHHhCCC
Confidence 887664 36999999975321 22 35688999999999999999999999998653 479999999987666
Q ss_pred CCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcc
Q psy13409 163 DGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNH 242 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (330)
. +.+.+|++||+|+++|+++|+.|++
T Consensus 158 ~--------------~~~~~Y~asKaal~~l~~~la~e~~---------------------------------------- 183 (256)
T TIGR01500 158 F--------------KGWALYCAGKAARDMLFQVLALEEK---------------------------------------- 183 (256)
T ss_pred C--------------CCchHHHHHHHHHHHHHHHHHHHhc----------------------------------------
Confidence 4 6778999999999999999999998
Q ss_pred cccccccCCCCCCCCceeEEEeeCcccccCcccccCC---CchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccc
Q psy13409 243 YCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDS---IIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCER 317 (330)
Q Consensus 243 ~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~ 317 (330)
+ +||+||+|+||+|+|++.+.... .+...+... .++++ +.+|+|+|+.++++++ ..++
T Consensus 184 ----------~---~~i~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~eva~~~~~l~~--~~~~ 246 (256)
T TIGR01500 184 ----------N---PNVRVLNYAPGVLDTDMQQQVREESVDPDMRKGLQELKAKGK--LVDPKVSAQKLLSLLE--KDKF 246 (256)
T ss_pred ----------C---CCeEEEEecCCcccchHHHHHHHhcCChhHHHHHHHHHhcCC--CCCHHHHHHHHHHHHh--cCCc
Confidence 6 79999999999999998764321 111112222 34444 8899999999999985 3579
Q ss_pred cCceecccCC
Q psy13409 318 ETGLYYAKAD 327 (330)
Q Consensus 318 ~~G~~~~~~~ 327 (330)
+||++++.+|
T Consensus 247 ~~G~~~~~~~ 256 (256)
T TIGR01500 247 KSGAHVDYYD 256 (256)
T ss_pred CCcceeeccC
Confidence 9999999875
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=269.18 Aligned_cols=240 Identities=22% Similarity=0.285 Sum_probs=201.2
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
+++++|+++||||++|||+++++.|+++|++|++++|+.+.+++..++++. .+.++.++.+|+++.+++.++++
T Consensus 7 ~~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~------~~~~~~~~~~D~~~~~~i~~~~~ 80 (255)
T PRK06113 7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQ------LGGQAFACRCDITSEQELSALAD 80 (255)
T ss_pred cCcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh------cCCcEEEEEccCCCHHHHHHHHH
Confidence 458899999999999999999999999999999999998888877777654 25578899999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCCC-CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 92 EILDNESAIHLLINNAGVMMCP-RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~-~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
.+.+.++++|++|||||...+. .+.+.++++..+++|+.+++++++++++.|.+.+.++||++||..+..+.
T Consensus 81 ~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~------- 153 (255)
T PRK06113 81 FALSKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKN------- 153 (255)
T ss_pred HHHHHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEecccccCCC-------
Confidence 9999999999999999976432 46778999999999999999999999999987777899999999877664
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
+++..|+++|+|+++++++++.++.
T Consensus 154 -------~~~~~Y~~sK~a~~~~~~~la~~~~------------------------------------------------ 178 (255)
T PRK06113 154 -------INMTSYASSKAAASHLVRNMAFDLG------------------------------------------------ 178 (255)
T ss_pred -------CCcchhHHHHHHHHHHHHHHHHHhh------------------------------------------------
Confidence 5677899999999999999999998
Q ss_pred CCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 251 PPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 251 ~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
. .||+||+|+||+++|++....... .............++.+|+|+|++++||+++ .+.+++|+.|.-.
T Consensus 179 --~---~~i~v~~v~pg~~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~a~~~~~l~~~-~~~~~~G~~i~~~ 247 (255)
T PRK06113 179 --E---KNIRVNGIAPGAILTDALKSVITP-EIEQKMLQHTPIRRLGQPQDIANAALFLCSP-AASWVSGQILTVS 247 (255)
T ss_pred --h---hCeEEEEEecccccccccccccCH-HHHHHHHhcCCCCCCcCHHHHHHHHHHHcCc-cccCccCCEEEEC
Confidence 5 799999999999999987653211 1111111211122378999999999999854 5779999988654
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=277.71 Aligned_cols=238 Identities=23% Similarity=0.291 Sum_probs=196.0
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChh--HHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLE--KAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~--~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
.+++||++|||||++|||+++++.|+++|++|+++.++.+ ..++..+.++. .+.++.++.||+++.++++++
T Consensus 51 ~~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Dl~~~~~v~~~ 124 (300)
T PRK06128 51 GRLQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQA------EGRKAVALPGDLKDEAFCRQL 124 (300)
T ss_pred cccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHH------cCCeEEEEecCCCCHHHHHHH
Confidence 3588999999999999999999999999999999887543 34445555543 256788999999999999999
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCC---CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCC
Q psy13409 90 AQEILDNESAIHLLINNAGVMMC---PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSM 166 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~---~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~ 166 (330)
++++.+.++++|++|||||.... ..+.+.++|++.+++|+.+++++++.+++.|.+ +++||++||..+..+.
T Consensus 125 ~~~~~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~~~iv~~sS~~~~~~~--- 199 (300)
T PRK06128 125 VERAVKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPP--GASIINTGSIQSYQPS--- 199 (300)
T ss_pred HHHHHHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCc--CCEEEEECCccccCCC---
Confidence 99999999999999999997532 357788999999999999999999999998864 4799999999877664
Q ss_pred cccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccc
Q psy13409 167 HFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKN 246 (330)
Q Consensus 167 ~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (330)
+.+..|++||+|+++|++++++++.
T Consensus 200 -----------~~~~~Y~asK~a~~~~~~~la~el~-------------------------------------------- 224 (300)
T PRK06128 200 -----------PTLLDYASTKAAIVAFTKALAKQVA-------------------------------------------- 224 (300)
T ss_pred -----------CCchhHHHHHHHHHHHHHHHHHHhh--------------------------------------------
Confidence 5678899999999999999999998
Q ss_pred cccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCceecc
Q psy13409 247 VLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYA 324 (330)
Q Consensus 247 ~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~ 324 (330)
+ .||+||+|+||+|+|++...........+.+. .++++ +.+|+|+|++++||+++ .++++||+.|.
T Consensus 225 ------~---~gI~v~~v~PG~i~t~~~~~~~~~~~~~~~~~~~~p~~r--~~~p~dva~~~~~l~s~-~~~~~~G~~~~ 292 (300)
T PRK06128 225 ------E---KGIRVNAVAPGPVWTPLQPSGGQPPEKIPDFGSETPMKR--PGQPVEMAPLYVLLASQ-ESSYVTGEVFG 292 (300)
T ss_pred ------h---cCcEEEEEEECcCcCCCcccCCCCHHHHHHHhcCCCCCC--CcCHHHHHHHHHHHhCc-cccCccCcEEe
Confidence 5 79999999999999998643221111122222 23444 88999999999999966 56799999987
Q ss_pred cCC
Q psy13409 325 KAD 327 (330)
Q Consensus 325 ~~~ 327 (330)
..+
T Consensus 293 v~g 295 (300)
T PRK06128 293 VTG 295 (300)
T ss_pred eCC
Confidence 554
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=269.53 Aligned_cols=241 Identities=22% Similarity=0.288 Sum_probs=197.5
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh-hHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL-EKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~-~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.++++|+++||||++|||+++++.|+++|++|+++.|+. +.+....+.+.. .+.++.++.+|+++++++.+++
T Consensus 3 ~~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~------~~~~~~~~~~Dl~~~~~i~~~~ 76 (261)
T PRK08936 3 SDLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKK------AGGEAIAVKGDVTVESDVVNLI 76 (261)
T ss_pred cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHH------cCCeEEEEEecCCCHHHHHHHH
Confidence 458999999999999999999999999999999988854 455556656644 2567889999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCCc
Q psy13409 91 QEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~~ 167 (330)
+.+.+.++++|++|||||...+. .+.+.+++++.+++|+.+++.+++.+++.|.+.+ .|+||++||..+..+.
T Consensus 77 ~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~~~~---- 152 (261)
T PRK08936 77 QTAVKEFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQIPW---- 152 (261)
T ss_pred HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEccccccCCC----
Confidence 99999999999999999976542 5678899999999999999999999999998765 5899999998766553
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
+.+.+|+++|+|+++++++++.++.
T Consensus 153 ----------~~~~~Y~~sKaa~~~~~~~la~e~~--------------------------------------------- 177 (261)
T PRK08936 153 ----------PLFVHYAASKGGVKLMTETLAMEYA--------------------------------------------- 177 (261)
T ss_pred ----------CCCcccHHHHHHHHHHHHHHHHHHh---------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+ .||+||+|+||+|+|++.+...................++.+|+|+|+.++||+++ .++++||+.+-..
T Consensus 178 -----~---~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~s~-~~~~~~G~~i~~d 247 (261)
T PRK08936 178 -----P---KGIRVNNIGPGAINTPINAEKFADPKQRADVESMIPMGYIGKPEEIAAVAAWLASS-EASYVTGITLFAD 247 (261)
T ss_pred -----h---cCeEEEEEEECcCCCCccccccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCc-ccCCccCcEEEEC
Confidence 5 79999999999999998654322211111111112222388999999999999976 5679999876543
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=271.23 Aligned_cols=237 Identities=26% Similarity=0.311 Sum_probs=191.0
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
++++||+++||||++|||++++++|+++|++|+++.++.+.. .+.+.. .++.++.+|++++++++++++
T Consensus 3 ~~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~---~~~l~~--------~~~~~~~~Dl~~~~~~~~~~~ 71 (255)
T PRK06463 3 MRFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENE---AKELRE--------KGVFTIKCDVGNRDQVKKSKE 71 (255)
T ss_pred CCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHH---HHHHHh--------CCCeEEEecCCCHHHHHHHHH
Confidence 467899999999999999999999999999999887765432 222322 146789999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 92 EILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
++.+.++++|++|||||.... ..+.+.++|+.++++|+.+++.+++.++|.|.+++.|+||++||..+..+.
T Consensus 72 ~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~~------ 145 (255)
T PRK06463 72 VVEKEFGRVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSKNGAIVNIASNAGIGTA------ 145 (255)
T ss_pred HHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHhCCCC------
Confidence 999999999999999998642 356788999999999999999999999999987778999999998765321
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
.+....|++||+|+++|+++++.|+.
T Consensus 146 -------~~~~~~Y~asKaa~~~~~~~la~e~~----------------------------------------------- 171 (255)
T PRK06463 146 -------AEGTTFYAITKAGIIILTRRLAFELG----------------------------------------------- 171 (255)
T ss_pred -------CCCccHhHHHHHHHHHHHHHHHHHhh-----------------------------------------------
Confidence 24667899999999999999999998
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCc---hhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSII---PGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+ .||+||+|+||+|+|++........ ...++........++.+|+|+|+.++||+++ .+.++||+.+...
T Consensus 172 ---~---~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~s~-~~~~~~G~~~~~d 244 (255)
T PRK06463 172 ---K---YGIRVNAVAPGWVETDMTLSGKSQEEAEKLRELFRNKTVLKTTGKPEDIANIVLFLASD-DARYITGQVIVAD 244 (255)
T ss_pred ---h---cCeEEEEEeeCCCCCchhhcccCccchHHHHHHHHhCCCcCCCcCHHHHHHHHHHHcCh-hhcCCCCCEEEEC
Confidence 5 7999999999999999875432211 1112222211222378999999999999865 4579999998654
|
|
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=274.78 Aligned_cols=226 Identities=30% Similarity=0.379 Sum_probs=192.4
Q ss_pred cCC--CchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhcC-CC
Q psy13409 23 GSN--TGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNE-SA 99 (330)
Q Consensus 23 Gas--~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~~-g~ 99 (330)
|++ +|||+++|+.|+++|++|++++|+.+++++..+++.+.. +.+ ++.+|++++++++++++++.+.+ ++
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~-----~~~--~~~~D~~~~~~v~~~~~~~~~~~~g~ 73 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEY-----GAE--VIQCDLSDEESVEALFDEAVERFGGR 73 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHT-----TSE--EEESCTTSHHHHHHHHHHHHHHHCSS
T ss_pred CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHc-----CCc--eEeecCcchHHHHHHHHHHHhhcCCC
Confidence 566 999999999999999999999999998877777776653 334 49999999999999999999999 99
Q ss_pred eeEEEEcCCCCCC------CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccccc
Q psy13409 100 IHLLINNAGVMMC------PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINL 173 (330)
Q Consensus 100 iDvlInnAG~~~~------~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~ 173 (330)
+|++|||+|...+ ..+.+.++|++.+++|+.+++.++++++|+|.+. |+||++||..+..+.
T Consensus 74 iD~lV~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--gsii~iss~~~~~~~---------- 141 (241)
T PF13561_consen 74 IDILVNNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKG--GSIINISSIAAQRPM---------- 141 (241)
T ss_dssp ESEEEEEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHE--EEEEEEEEGGGTSBS----------
T ss_pred eEEEEecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CCcccccchhhcccC----------
Confidence 9999999998764 1467889999999999999999999999977664 899999998776553
Q ss_pred ccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCC
Q psy13409 174 EKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPG 253 (330)
Q Consensus 174 ~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (330)
+.+..|+++|+|+++|++++|.||+. .
T Consensus 142 ----~~~~~y~~sKaal~~l~r~lA~el~~-------------------------------------------------~ 168 (241)
T PF13561_consen 142 ----PGYSAYSASKAALEGLTRSLAKELAP-------------------------------------------------K 168 (241)
T ss_dssp ----TTTHHHHHHHHHHHHHHHHHHHHHGG-------------------------------------------------H
T ss_pred ----ccchhhHHHHHHHHHHHHHHHHHhcc-------------------------------------------------c
Confidence 67779999999999999999999982 1
Q ss_pred CCCCceeEEEeeCcccccCcccccCCCchhhHHHHH--HhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 254 ANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQ--RVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 254 ~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
.|||||+|+||+|+|++.......+...++... ++++ +.+|+|+|++++||+++ .++++||+.|-..
T Consensus 169 ---~gIrVN~V~pG~i~t~~~~~~~~~~~~~~~~~~~~pl~r--~~~~~evA~~v~fL~s~-~a~~itG~~i~vD 237 (241)
T PF13561_consen 169 ---KGIRVNAVSPGPIETPMTERIPGNEEFLEELKKRIPLGR--LGTPEEVANAVLFLASD-AASYITGQVIPVD 237 (241)
T ss_dssp ---GTEEEEEEEESSBSSHHHHHHHTHHHHHHHHHHHSTTSS--HBEHHHHHHHHHHHHSG-GGTTGTSEEEEES
T ss_pred ---cCeeeeeecccceeccchhccccccchhhhhhhhhccCC--CcCHHHHHHHHHHHhCc-cccCccCCeEEEC
Confidence 399999999999999987665444444444443 4555 88999999999999966 6789999998654
|
... |
| >KOG1201|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=271.12 Aligned_cols=224 Identities=22% Similarity=0.377 Sum_probs=198.5
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
...+++|++||||||++|||+++|.+|+++|+.+++.+.|.+..+++.+++++. +++..+.||+++.+++.++
T Consensus 32 ~~k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~-------g~~~~y~cdis~~eei~~~ 104 (300)
T KOG1201|consen 32 PLKSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKI-------GEAKAYTCDISDREEIYRL 104 (300)
T ss_pred chhhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhc-------CceeEEEecCCCHHHHHHH
Confidence 345789999999999999999999999999999999999999999998888752 4899999999999999999
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCc
Q psy13409 90 AQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~ 167 (330)
.+++++..|.+|+||||||+.... .+.+.+++++++++|+.++|+++++|+|.|.++..|+||.++|.+|..+.
T Consensus 105 a~~Vk~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~GHIV~IaS~aG~~g~---- 180 (300)
T KOG1201|consen 105 AKKVKKEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNNGHIVTIASVAGLFGP---- 180 (300)
T ss_pred HHHHHHhcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCCceEEEehhhhcccCC----
Confidence 999999999999999999998643 68899999999999999999999999999999999999999999999996
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
++...|++||+|+.+|.++|..|++.
T Consensus 181 ----------~gl~~YcaSK~a~vGfhesL~~EL~~-------------------------------------------- 206 (300)
T KOG1201|consen 181 ----------AGLADYCASKFAAVGFHESLSMELRA-------------------------------------------- 206 (300)
T ss_pred ----------ccchhhhhhHHHHHHHHHHHHHHHHh--------------------------------------------
Confidence 78899999999999999999999982
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhcccc
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKK 314 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~ 314 (330)
...+||++..|+|++++|.+.......+. +-. +.+|+++|+.++..+..++
T Consensus 207 ------~~~~~IktTlv~P~~i~Tgmf~~~~~~~~--------l~P--~L~p~~va~~Iv~ai~~n~ 257 (300)
T KOG1201|consen 207 ------LGKDGIKTTLVCPYFINTGMFDGATPFPT--------LAP--LLEPEYVAKRIVEAILTNQ 257 (300)
T ss_pred ------cCCCCeeEEEEeeeeccccccCCCCCCcc--------ccC--CCCHHHHHHHHHHHHHcCC
Confidence 22268999999999999999886211111 111 6789999999998876654
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=276.69 Aligned_cols=257 Identities=38% Similarity=0.576 Sum_probs=205.5
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
.+.+++||+++||||++|||++++++|+++|++|++++|+.++.++..+++.... .+.++.++.||+++.++++++
T Consensus 8 ~~~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~----~~~~v~~~~~Dl~d~~sv~~~ 83 (313)
T PRK05854 8 TVPDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAV----PDAKLSLRALDLSSLASVAAL 83 (313)
T ss_pred cCcccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC----CCCceEEEEecCCCHHHHHHH
Confidence 3457899999999999999999999999999999999999998888888876542 245789999999999999999
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCCC-CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 90 AQEILDNESAIHLLINNAGVMMCP-RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~~-~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
++++.+.++++|+||||||..... .+.+.+.++.++++|+.+++.+++.++|.|.+. .++||++||.++..+. ..+
T Consensus 84 ~~~~~~~~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~-~~riv~vsS~~~~~~~--~~~ 160 (313)
T PRK05854 84 GEQLRAEGRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAG-RARVTSQSSIAARRGA--INW 160 (313)
T ss_pred HHHHHHhCCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhC-CCCeEEEechhhcCCC--cCc
Confidence 999999999999999999987543 356789999999999999999999999999764 6899999999876552 233
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
.++....++++...|+.||+|+++|+++|+.++...
T Consensus 161 ~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~-------------------------------------------- 196 (313)
T PRK05854 161 DDLNWERSYAGMRAYSQSKIAVGLFALELDRRSRAA-------------------------------------------- 196 (313)
T ss_pred ccccccccCcchhhhHHHHHHHHHHHHHHHHHhhcC--------------------------------------------
Confidence 344444456778899999999999999999875410
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCc----hhhHHHHHHhh--hhhccChHHHHHHHHHhhccccccccCcee
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSII----PGTAWLYQRVG--GLFIKSPLQGAQTTLYCALDKKCERETGLY 322 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~----~~~~~~~~~~~--~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~ 322 (330)
. .||+||+|+||+|+|++........ ....+....+. ...+.++++.|.++++++.++.. .+|.|
T Consensus 197 ----~---~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~~l~~a~~~~~--~~g~~ 267 (313)
T PRK05854 197 ----G---WGITSNLAHPGVAPTNLLAARPEVGRDKDTLMVRLIRSLSARGFLVGTVESAILPALYAATSPDA--EGGAF 267 (313)
T ss_pred ----C---CCeEEEEEecceeccCccccccccccchhHHHHHHHHHHhhcccccCCHHHHHHHhhheeeCCCC--CCCcE
Confidence 3 6899999999999999875432111 11112222221 11257999999999999987754 36999
Q ss_pred cccC
Q psy13409 323 YAKA 326 (330)
Q Consensus 323 ~~~~ 326 (330)
|...
T Consensus 268 ~~~~ 271 (313)
T PRK05854 268 YGPR 271 (313)
T ss_pred ECCC
Confidence 8764
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=268.15 Aligned_cols=239 Identities=23% Similarity=0.269 Sum_probs=193.2
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
+..++++|+++||||++|||++++++|+++|++|++++|+.. ..+..+++.. .+.++.++.+|++++++++++
T Consensus 2 ~~~~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~-~~~~~~~~~~------~~~~~~~~~~D~~~~~~~~~~ 74 (260)
T PRK12823 2 MNQRFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSEL-VHEVAAELRA------AGGEALALTADLETYAGAQAA 74 (260)
T ss_pred cccccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchH-HHHHHHHHHh------cCCeEEEEEEeCCCHHHHHHH
Confidence 345689999999999999999999999999999999999853 4444455543 256788999999999999999
Q ss_pred HHHHHhcCCCeeEEEEcCCCCC---CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCC
Q psy13409 90 AQEILDNESAIHLLINNAGVMM---CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSM 166 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~---~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~ 166 (330)
++++.+.++++|++|||||... +..+.+.++++..+++|+.+++.+++.++|.|.+++.|+||++||..+. +
T Consensus 75 ~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~-~---- 149 (260)
T PRK12823 75 MAAAVEAFGRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGGGAIVNVSSIATR-G---- 149 (260)
T ss_pred HHHHHHHcCCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEcCcccc-C----
Confidence 9999999999999999999642 3367788999999999999999999999999988777899999997652 2
Q ss_pred cccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccc
Q psy13409 167 HFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKN 246 (330)
Q Consensus 167 ~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (330)
....+|++||+|++.|+++++.|++
T Consensus 150 -----------~~~~~Y~~sK~a~~~~~~~la~e~~-------------------------------------------- 174 (260)
T PRK12823 150 -----------INRVPYSAAKGGVNALTASLAFEYA-------------------------------------------- 174 (260)
T ss_pred -----------CCCCccHHHHHHHHHHHHHHHHHhc--------------------------------------------
Confidence 2345799999999999999999998
Q ss_pred cccCCCCCCCCceeEEEeeCcccccCccccc------CCC-chhhH-H---H--HHHhhhhhccChHHHHHHHHHhhccc
Q psy13409 247 VLFHPPGANITNVNTYAVHPGVVDTELSRHF------DSI-IPGTA-W---L--YQRVGGLFIKSPLQGAQTTLYCALDK 313 (330)
Q Consensus 247 ~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~------~~~-~~~~~-~---~--~~~~~~~~~~~~~e~a~~~~~l~~~~ 313 (330)
+ .||+||+|+||+|+|++.... ... ..... . . ..++++ +.+|+|+|++++||+++
T Consensus 175 ------~---~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~dva~~~~~l~s~- 242 (260)
T PRK12823 175 ------E---HGIRVNAVAPGGTEAPPRRVPRNAAPQSEQEKAWYQQIVDQTLDSSLMKR--YGTIDEQVAAILFLASD- 242 (260)
T ss_pred ------c---cCcEEEEEecCccCCcchhhHHhhccccccccccHHHHHHHHhccCCccc--CCCHHHHHHHHHHHcCc-
Confidence 5 799999999999999863211 010 00011 1 1 123344 78999999999999966
Q ss_pred cccccCceecccCC
Q psy13409 314 KCERETGLYYAKAD 327 (330)
Q Consensus 314 ~~~~~~G~~~~~~~ 327 (330)
.+.++||+.|....
T Consensus 243 ~~~~~~g~~~~v~g 256 (260)
T PRK12823 243 EASYITGTVLPVGG 256 (260)
T ss_pred ccccccCcEEeecC
Confidence 56799999886543
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=268.22 Aligned_cols=237 Identities=23% Similarity=0.259 Sum_probs=197.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
+|+++||||++|||+++++.|+++|++|++++|+.+.+++...++... +.++.++.+|++++++++++++++.+
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~~~~~ 75 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKD------GGKAIAVKADVSDRDQVFAAVRQVVD 75 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999988888777776542 46788999999999999999999999
Q ss_pred cCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCCcccccc
Q psy13409 96 NESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSMHFEDIN 172 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~~~~~~~ 172 (330)
.++++|++|||||.... ..+.+.++++..+++|+.+++.+++.+++.|.+.+ .++||++||..+..+.
T Consensus 76 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~--------- 146 (256)
T PRK08643 76 TFGDLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAGVVGN--------- 146 (256)
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECccccccCC---------
Confidence 99999999999997643 35678899999999999999999999999997754 5899999999887764
Q ss_pred cccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCC
Q psy13409 173 LEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPP 252 (330)
Q Consensus 173 ~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (330)
++...|+++|++++.+++++++|+.
T Consensus 147 -----~~~~~Y~~sK~a~~~~~~~la~e~~-------------------------------------------------- 171 (256)
T PRK08643 147 -----PELAVYSSTKFAVRGLTQTAARDLA-------------------------------------------------- 171 (256)
T ss_pred -----CCCchhHHHHHHHHHHHHHHHHHhc--------------------------------------------------
Confidence 5678899999999999999999998
Q ss_pred CCCCCceeEEEeeCcccccCcccccCCC--------chh-hHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceec
Q psy13409 253 GANITNVNTYAVHPGVVDTELSRHFDSI--------IPG-TAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYY 323 (330)
Q Consensus 253 ~~~~~~i~v~~v~pG~v~t~~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~ 323 (330)
+ .||+||+|+||+|+|++....... ... ...........++.+|+|+|+.++||+++ .++++||+.+
T Consensus 172 ~---~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~L~~~-~~~~~~G~~i 247 (256)
T PRK08643 172 S---EGITVNAYAPGIVKTPMMFDIAHQVGENAGKPDEWGMEQFAKDITLGRLSEPEDVANCVSFLAGP-DSDYITGQTI 247 (256)
T ss_pred c---cCcEEEEEeeCCCcChhhhHHHhhhccccCCCchHHHHHHhccCCCCCCcCHHHHHHHHHHHhCc-cccCccCcEE
Confidence 6 799999999999999987543211 110 11111112222378999999999999966 5789999988
Q ss_pred ccC
Q psy13409 324 AKA 326 (330)
Q Consensus 324 ~~~ 326 (330)
.-.
T Consensus 248 ~vd 250 (256)
T PRK08643 248 IVD 250 (256)
T ss_pred EeC
Confidence 543
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=267.09 Aligned_cols=243 Identities=23% Similarity=0.274 Sum_probs=205.3
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
..+++||+++||||+++||++++++|+++|++|++++|+.+.+++..+++++ .+.++.++.||+++++++.+++
T Consensus 6 ~~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~------~~~~~~~~~~Dl~~~~~~~~~~ 79 (256)
T PRK06124 6 RFSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRA------AGGAAEALAFDIADEEAVAAAF 79 (256)
T ss_pred ccCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHh------cCCceEEEEccCCCHHHHHHHH
Confidence 4568999999999999999999999999999999999998887777777654 2557889999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 91 QEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
+++.+.++++|++|||+|.... ..+.+.++|++.+++|+.+++.+.+.+++.|.+++.++||++||..+..+.
T Consensus 80 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~----- 154 (256)
T PRK06124 80 ARIDAEHGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIAGQVAR----- 154 (256)
T ss_pred HHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeechhccCC-----
Confidence 9999999999999999997643 356788999999999999999999999999988778999999999887664
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
+...+|+++|++++.++++++.|+.
T Consensus 155 ---------~~~~~Y~~sK~a~~~~~~~la~e~~---------------------------------------------- 179 (256)
T PRK06124 155 ---------AGDAVYPAAKQGLTGLMRALAAEFG---------------------------------------------- 179 (256)
T ss_pred ---------CCccHhHHHHHHHHHHHHHHHHHHH----------------------------------------------
Confidence 6678999999999999999999998
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
. .||+||+|+||+|+|++...........++........++.+|+|+|+++++|+++ .++++||+++...+
T Consensus 180 ----~---~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~-~~~~~~G~~i~~dg 250 (256)
T PRK06124 180 ----P---HGITSNAIAPGYFATETNAAMAADPAVGPWLAQRTPLGRWGRPEEIAGAAVFLASP-AASYVNGHVLAVDG 250 (256)
T ss_pred ----H---hCcEEEEEEECCccCcchhhhccChHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCc-ccCCcCCCEEEECC
Confidence 5 79999999999999998655432222222222222222378999999999999966 56799999986543
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=268.40 Aligned_cols=234 Identities=23% Similarity=0.239 Sum_probs=194.1
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
|+++++|+++||||++|||++++++|+++|++|++++|+.+. .. .+.++.++.+|+++++++++++
T Consensus 1 ~~~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~--------~~------~~~~~~~~~~D~~~~~~~~~~~ 66 (252)
T PRK07856 1 NLDLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPE--------TV------DGRPAEFHAADVRDPDQVAALV 66 (252)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhh--------hh------cCCceEEEEccCCCHHHHHHHH
Confidence 346899999999999999999999999999999999998754 01 2457889999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhh-CCCeEEEEcCCCcccCCCCCc
Q psy13409 91 QEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKS-APARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~-~~g~IV~iSS~~~~~~~~~~~ 167 (330)
+.+.+.++++|++|||||.... ..+.+.+++++.+++|+.+++.+++.+.+.|.++ +.|+||++||..+..+.
T Consensus 67 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~---- 142 (252)
T PRK07856 67 DAIVERHGRLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGRRPS---- 142 (252)
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccCCCC----
Confidence 9999999999999999997643 2567889999999999999999999999998765 35899999999887664
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
+.+..|+++|++++.|+++++.|++
T Consensus 143 ----------~~~~~Y~~sK~a~~~l~~~la~e~~--------------------------------------------- 167 (252)
T PRK07856 143 ----------PGTAAYGAAKAGLLNLTRSLAVEWA--------------------------------------------- 167 (252)
T ss_pred ----------CCCchhHHHHHHHHHHHHHHHHHhc---------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
+ . |+||+|+||+|+|++...........++........++.+|+|+|++++||+++ .++++||+.+...+
T Consensus 168 -----~---~-i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~va~~~~~L~~~-~~~~i~G~~i~vdg 237 (252)
T PRK07856 168 -----P---K-VRVNAVVVGLVRTEQSELHYGDAEGIAAVAATVPLGRLATPADIAWACLFLASD-LASYVSGANLEVHG 237 (252)
T ss_pred -----C---C-eEEEEEEeccccChHHhhhccCHHHHHHHhhcCCCCCCcCHHHHHHHHHHHcCc-ccCCccCCEEEECC
Confidence 4 5 999999999999998654322222222222222223378999999999999865 56799999986544
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=271.23 Aligned_cols=240 Identities=24% Similarity=0.244 Sum_probs=196.3
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
.+++||+++||||++|||++++++|+++|++|++++|+.+..++..+++. .+.++.++.+|++|+++++++++
T Consensus 14 ~~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~Dl~d~~~~~~~~~ 86 (280)
T PLN02253 14 QRLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLG-------GEPNVCFFHCDVTVEDDVSRAVD 86 (280)
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc-------CCCceEEEEeecCCHHHHHHHHH
Confidence 45789999999999999999999999999999999998876665554442 24578899999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCC----CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCc
Q psy13409 92 EILDNESAIHLLINNAGVMMC----PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~----~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~ 167 (330)
.+.+.++++|++|||||.... ..+.+.++++.++++|+.+++++++++++.|.+++.|+||++||..+..+.
T Consensus 87 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~---- 162 (280)
T PLN02253 87 FTVDKFGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASAIGG---- 162 (280)
T ss_pred HHHHHhCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhcccC----
Confidence 999999999999999997532 256788999999999999999999999999987777999999999887764
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
+....|++||+|++.++++++.|++
T Consensus 163 ----------~~~~~Y~~sK~a~~~~~~~la~e~~--------------------------------------------- 187 (280)
T PLN02253 163 ----------LGPHAYTGSKHAVLGLTRSVAAELG--------------------------------------------- 187 (280)
T ss_pred ----------CCCcccHHHHHHHHHHHHHHHHHhh---------------------------------------------
Confidence 4566899999999999999999998
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCCCchh-hHH---HHHHhh-----hhhccChHHHHHHHHHhhcccccccc
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPG-TAW---LYQRVG-----GLFIKSPLQGAQTTLYCALDKKCERE 318 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~-~~~---~~~~~~-----~~~~~~~~e~a~~~~~l~~~~~~~~~ 318 (330)
. +||+||+|+||+|+|++.......... ... ...... ..+..+|+|+|++++||+++ .++++
T Consensus 188 -----~---~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~dva~~~~~l~s~-~~~~i 258 (280)
T PLN02253 188 -----K---HGIRVNCVSPYAVPTALALAHLPEDERTEDALAGFRAFAGKNANLKGVELTVDDVANAVLFLASD-EARYI 258 (280)
T ss_pred -----h---cCeEEEEEeeCcccccccccccccccchhhhhhhhHHHhhcCCCCcCCCCCHHHHHHHHHhhcCc-ccccc
Confidence 5 799999999999999976432211110 000 001110 01257899999999999865 56799
Q ss_pred CceecccC
Q psy13409 319 TGLYYAKA 326 (330)
Q Consensus 319 ~G~~~~~~ 326 (330)
+|+.|.-.
T Consensus 259 ~G~~i~vd 266 (280)
T PLN02253 259 SGLNLMID 266 (280)
T ss_pred cCcEEEEC
Confidence 99987653
|
|
| >PRK06300 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=279.94 Aligned_cols=245 Identities=14% Similarity=0.113 Sum_probs=180.8
Q ss_pred CCCCCCCCEEEEEcCC--CchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhc----ccCCCC-----eEEEEEc
Q psy13409 10 ADTRLDGKTAIVTGSN--TGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLK----DVKDAG-----EVVIRQL 78 (330)
Q Consensus 10 ~~~~~~gk~aLITGas--~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~----~~~~~~-----~v~~i~~ 78 (330)
++.+++||++||||++ +|||+++|+.|+++|++|++.++.+ .+....+..+.... ....+. ++..+.+
T Consensus 2 ~~~~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 80 (299)
T PRK06300 2 LKIDLTGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGTWVP-IYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDA 80 (299)
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEeccc-hhhhhhhhcccccccccccccccchhhhhhHHHhhh
Confidence 4568999999999996 9999999999999999999987652 12111111110000 000011 1111223
Q ss_pred cCCCH------------------HHHHHHHHHHHhcCCCeeEEEEcCCCCC----CCCCCChhhHHHhHHHHHHHHHHHH
Q psy13409 79 DLSSL------------------KSVRKCAQEILDNESAIHLLINNAGVMM----CPRQLTEDGYELQFATNHLGHYLFT 136 (330)
Q Consensus 79 Dls~~------------------~si~~l~~~i~~~~g~iDvlInnAG~~~----~~~~~~~~~~~~~l~vN~~g~~~l~ 136 (330)
|+++. ++++++++++.+.+|++|+||||||... +..+.+.++|++.+++|+.++++++
T Consensus 81 d~~~~~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~ 160 (299)
T PRK06300 81 SFDTPEDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLL 160 (299)
T ss_pred hcCCCEEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHH
Confidence 33333 4689999999999999999999998642 3368899999999999999999999
Q ss_pred HHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccccCCCcc-hhhHHhHHHHHHHHHHHHHHhcccccccccccCch
Q psy13409 137 LLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSAT-GAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPK 215 (330)
Q Consensus 137 ~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~ 215 (330)
++++|.|.+ +|+||++||..+..+. +.. ..|++||+|+++|+++||.|++.
T Consensus 161 ~a~~p~m~~--~G~ii~iss~~~~~~~--------------p~~~~~Y~asKaAl~~lt~~la~el~~------------ 212 (299)
T PRK06300 161 SHFGPIMNP--GGSTISLTYLASMRAV--------------PGYGGGMSSAKAALESDTKVLAWEAGR------------ 212 (299)
T ss_pred HHHHHHhhc--CCeEEEEeehhhcCcC--------------CCccHHHHHHHHHHHHHHHHHHHHhCC------------
Confidence 999999965 4899999998876664 444 37999999999999999999971
Q ss_pred hhcccccccchhhhhhhcccCCCCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhh
Q psy13409 216 EILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGG 293 (330)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~ 293 (330)
+ .|||||+|+||+|+|++...........++.. .++++
T Consensus 213 -------------------------------------~---~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r 252 (299)
T PRK06300 213 -------------------------------------R---WGIRVNTISAGPLASRAGKAIGFIERMVDYYQDWAPLPE 252 (299)
T ss_pred -------------------------------------C---CCeEEEEEEeCCccChhhhcccccHHHHHHHHhcCCCCC
Confidence 1 39999999999999998754322111112221 23344
Q ss_pred hhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 294 LFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 294 ~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
..+|+|+|++++||+++ .++++||+.+...
T Consensus 253 --~~~peevA~~v~~L~s~-~~~~itG~~i~vd 282 (299)
T PRK06300 253 --PMEAEQVGAAAAFLVSP-LASAITGETLYVD 282 (299)
T ss_pred --CcCHHHHHHHHHHHhCc-cccCCCCCEEEEC
Confidence 78999999999999866 5679999987643
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-35 Score=266.26 Aligned_cols=238 Identities=21% Similarity=0.231 Sum_probs=193.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
||+++||||++|||+++++.|+++|++|++++|+.+.+++..+++... +.++.++.+|++++++++++++++.+
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQF------PGQVLTVQMDVRNPEDVQKMVEQIDE 74 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999988877777666542 46788999999999999999999999
Q ss_pred cCCCeeEEEEcCCCCC--CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCCcccccc
Q psy13409 96 NESAIHLLINNAGVMM--CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSMHFEDIN 172 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~--~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~~~~~~~ 172 (330)
.++++|++|||+|... +..+.+.++|++++++|+.+++++++++++.|.+.. .|+||++||..+..+.
T Consensus 75 ~~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~--------- 145 (252)
T PRK07677 75 KFGRIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAWDAG--------- 145 (252)
T ss_pred HhCCccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhhccCC---------
Confidence 9999999999999643 335788999999999999999999999999987643 5899999999876553
Q ss_pred cccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCC
Q psy13409 173 LEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPP 252 (330)
Q Consensus 173 ~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (330)
+....|++||+|+++|+++||.|+.+
T Consensus 146 -----~~~~~Y~~sKaa~~~~~~~la~e~~~------------------------------------------------- 171 (252)
T PRK07677 146 -----PGVIHSAAAKAGVLAMTRTLAVEWGR------------------------------------------------- 171 (252)
T ss_pred -----CCCcchHHHHHHHHHHHHHHHHHhCc-------------------------------------------------
Confidence 56678999999999999999999862
Q ss_pred CCCCCceeEEEeeCcccccCc-ccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 253 GANITNVNTYAVHPGVVDTEL-SRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 253 ~~~~~~i~v~~v~pG~v~t~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
. .||+||+|+||+|+|+. ...........+.........++.+|+|+|++++||+++ .+.++||+.+.-.
T Consensus 172 ~---~gi~v~~v~PG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~-~~~~~~g~~~~~~ 242 (252)
T PRK07677 172 K---YGIRVNAIAPGPIERTGGADKLWESEEAAKRTIQSVPLGRLGTPEEIAGLAYFLLSD-EAAYINGTCITMD 242 (252)
T ss_pred c---cCeEEEEEeecccccccccccccCCHHHHHHHhccCCCCCCCCHHHHHHHHHHHcCc-cccccCCCEEEEC
Confidence 2 59999999999999643 222211122122222222223388999999999999865 4679999887543
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-35 Score=278.24 Aligned_cols=233 Identities=24% Similarity=0.288 Sum_probs=197.2
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
++++++|++|||||++|||++++++|+++|++|++++|+.+.++++.+++++ .+.++.++.+|++|.+++++++
T Consensus 2 ~~~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~------~g~~~~~~~~Dv~d~~~v~~~~ 75 (330)
T PRK06139 2 MGPLHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRA------LGAEVLVVPTDVTDADQVKALA 75 (330)
T ss_pred CcCCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh------cCCcEEEEEeeCCCHHHHHHHH
Confidence 3468999999999999999999999999999999999999999888887765 2567889999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 91 QEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
+.+.+.++++|++|||||.... ..+.+.+++++.+++|+.+++.+++.++|.|.+++.|+||++||..+..+.
T Consensus 76 ~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~g~iV~isS~~~~~~~----- 150 (330)
T PRK06139 76 TQAASFGGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGHGIFINMISLGGFAAQ----- 150 (330)
T ss_pred HHHHHhcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhcCCC-----
Confidence 9999988999999999997654 367888999999999999999999999999998878999999998877664
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
+....|++||+|+.+|+++|+.|+..
T Consensus 151 ---------p~~~~Y~asKaal~~~~~sL~~El~~--------------------------------------------- 176 (330)
T PRK06139 151 ---------PYAAAYSASKFGLRGFSEALRGELAD--------------------------------------------- 176 (330)
T ss_pred ---------CCchhHHHHHHHHHHHHHHHHHHhCC---------------------------------------------
Confidence 67789999999999999999999872
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCc
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETG 320 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G 320 (330)
. +||+|++|+||+|+|++..+...... ....+ ...+.+|+++|+.+++++.++......|
T Consensus 177 ----~---~gI~V~~v~Pg~v~T~~~~~~~~~~~---~~~~~--~~~~~~pe~vA~~il~~~~~~~~~~~~g 236 (330)
T PRK06139 177 ----H---PDIHVCDVYPAFMDTPGFRHGANYTG---RRLTP--PPPVYDPRRVAKAVVRLADRPRATTTVG 236 (330)
T ss_pred ----C---CCeEEEEEecCCccCccccccccccc---ccccC--CCCCCCHHHHHHHHHHHHhCCCCEEEcC
Confidence 2 48999999999999998754321110 00011 1226799999999999997766555555
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=263.65 Aligned_cols=241 Identities=25% Similarity=0.274 Sum_probs=198.1
Q ss_pred cCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHH
Q psy13409 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRK 88 (330)
Q Consensus 9 ~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~ 88 (330)
..++++++|++|||||++|||.+++++|+++|++|++++|+... .+...++ ...++.++.+|+++++++++
T Consensus 8 ~~~~~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~-~~~~~~~--------~~~~~~~~~~Dl~~~~~~~~ 78 (255)
T PRK06841 8 DLAFDLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDV-AEVAAQL--------LGGNAKGLVCDVSDSQSVEA 78 (255)
T ss_pred hhhcCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHHh--------hCCceEEEEecCCCHHHHHH
Confidence 33457899999999999999999999999999999999998763 2222222 13457789999999999999
Q ss_pred HHHHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCC
Q psy13409 89 CAQEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSM 166 (330)
Q Consensus 89 l~~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~ 166 (330)
+++++.+.++++|++|||+|.... ..+.+.+++++.+++|+.+++.+++.+++.|.+++.++||++||..+..+.
T Consensus 79 ~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~--- 155 (255)
T PRK06841 79 AVAAVISAFGRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLASQAGVVAL--- 155 (255)
T ss_pred HHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcchhhccCC---
Confidence 999999999999999999998643 256788999999999999999999999999988778999999999877664
Q ss_pred cccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccc
Q psy13409 167 HFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKN 246 (330)
Q Consensus 167 ~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (330)
+....|+++|++++++++++|+|++
T Consensus 156 -----------~~~~~Y~~sK~a~~~~~~~la~e~~-------------------------------------------- 180 (255)
T PRK06841 156 -----------ERHVAYCASKAGVVGMTKVLALEWG-------------------------------------------- 180 (255)
T ss_pred -----------CCCchHHHHHHHHHHHHHHHHHHHH--------------------------------------------
Confidence 6678999999999999999999998
Q ss_pred cccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 247 VLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 247 ~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+ .||+||+|+||+|+|++.+....... .+.........++.+|+|+|+.+++|+++ .+.++||+.+...
T Consensus 181 ------~---~gi~v~~v~pg~v~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~va~~~~~l~~~-~~~~~~G~~i~~d 249 (255)
T PRK06841 181 ------P---YGITVNAISPTVVLTELGKKAWAGEK-GERAKKLIPAGRFAYPEEIAAAALFLASD-AAAMITGENLVID 249 (255)
T ss_pred ------h---hCeEEEEEEeCcCcCcccccccchhH-HHHHHhcCCCCCCcCHHHHHHHHHHHcCc-cccCccCCEEEEC
Confidence 5 79999999999999998764322111 11122222223488999999999999865 5679999988654
Q ss_pred C
Q psy13409 327 D 327 (330)
Q Consensus 327 ~ 327 (330)
+
T Consensus 250 g 250 (255)
T PRK06841 250 G 250 (255)
T ss_pred C
Confidence 3
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=269.10 Aligned_cols=238 Identities=22% Similarity=0.284 Sum_probs=196.9
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhH-------HHHHHHHHHHhhcccCCCCeEEEEEccCCCH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEK-------AETAADDIRTSLKDVKDAGEVVIRQLDLSSL 83 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~-------l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~ 83 (330)
|+++++|+++||||++|||.++++.|+++|++|++++|+.+. +++..+++.. .+.++.++.+|++++
T Consensus 1 ~~~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~D~~~~ 74 (273)
T PRK08278 1 MMSLSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEA------AGGQALPLVGDVRDE 74 (273)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHh------cCCceEEEEecCCCH
Confidence 356899999999999999999999999999999999998643 3344444443 256789999999999
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCccc
Q psy13409 84 KSVRKCAQEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTW 161 (330)
Q Consensus 84 ~si~~l~~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~ 161 (330)
+++.++++++.+.++++|++|||||.... ..+.+.+++++++++|+.+++.+++.+++.|.+++.|+||++||..+..
T Consensus 75 ~~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~ 154 (273)
T PRK08278 75 DQVAAAVAKAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNLD 154 (273)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhcc
Confidence 99999999999999999999999997543 3577889999999999999999999999999887778999999976543
Q ss_pred CCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCc
Q psy13409 162 GDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTN 241 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (330)
+. ..+++.+|++||++++.++++++.|++
T Consensus 155 ~~------------~~~~~~~Y~~sK~a~~~~~~~la~el~--------------------------------------- 183 (273)
T PRK08278 155 PK------------WFAPHTAYTMAKYGMSLCTLGLAEEFR--------------------------------------- 183 (273)
T ss_pred cc------------ccCCcchhHHHHHHHHHHHHHHHHHhh---------------------------------------
Confidence 31 015678999999999999999999998
Q ss_pred ccccccccCCCCCCCCceeEEEeeCc-ccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCc
Q psy13409 242 HYCKNVLFHPPGANITNVNTYAVHPG-VVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETG 320 (330)
Q Consensus 242 ~~~~~~~~~~~~~~~~~i~v~~v~pG-~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G 320 (330)
+ +||+||+|+|| +++|++.+...... .++++ ..+|+++|+.+++++++ .++++||
T Consensus 184 -----------~---~~I~v~~i~Pg~~i~t~~~~~~~~~~-------~~~~~--~~~p~~va~~~~~l~~~-~~~~~~G 239 (273)
T PRK08278 184 -----------D---DGIAVNALWPRTTIATAAVRNLLGGD-------EAMRR--SRTPEIMADAAYEILSR-PAREFTG 239 (273)
T ss_pred -----------h---cCcEEEEEeCCCccccHHHHhccccc-------ccccc--cCCHHHHHHHHHHHhcC-cccccee
Confidence 5 79999999999 68998765543211 12223 68999999999999866 4569999
Q ss_pred eecccCCCC
Q psy13409 321 LYYAKADLP 329 (330)
Q Consensus 321 ~~~~~~~~~ 329 (330)
+++.+.++.
T Consensus 240 ~~~~~~~~~ 248 (273)
T PRK08278 240 NFLIDEEVL 248 (273)
T ss_pred EEEeccchh
Confidence 999766653
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=272.32 Aligned_cols=250 Identities=40% Similarity=0.602 Sum_probs=199.0
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
..++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++. .+.++.+|+++.+++++++
T Consensus 21 ~~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~----------~v~~~~~Dl~d~~~v~~~~ 90 (315)
T PRK06196 21 GHDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGID----------GVEVVMLDLADLESVRAFA 90 (315)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh----------hCeEEEccCCCHHHHHHHH
Confidence 346789999999999999999999999999999999999887766655542 2678999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 91 QEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
+++.+.++++|++|||||...+..+.+.++++..+++|+.+++.+++.++|.|.+.+.++||++||..+..+. ..+.+
T Consensus 91 ~~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~--~~~~~ 168 (315)
T PRK06196 91 ERFLDSGRRIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGAGARVVALSSAGHRRSP--IRWDD 168 (315)
T ss_pred HHHHhcCCCCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEECCHHhccCC--CCccc
Confidence 9999989999999999998755556677889999999999999999999999988777899999997654331 11111
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
.+...+++++..|+.||++++.+++.++.++.
T Consensus 169 ~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~------------------------------------------------ 200 (315)
T PRK06196 169 PHFTRGYDKWLAYGQSKTANALFAVHLDKLGK------------------------------------------------ 200 (315)
T ss_pred cCccCCCChHHHHHHHHHHHHHHHHHHHHHhc------------------------------------------------
Confidence 11123456678999999999999999999998
Q ss_pred CCCCCCCceeEEEeeCcccccCcccccCCCchh-hHHHH---HHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 251 PPGANITNVNTYAVHPGVVDTELSRHFDSIIPG-TAWLY---QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 251 ~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
. +||+|++|+||+|.|++.+........ ..+.. .+++. ++.+|+|+|.+++||++.+......|.|+.+.
T Consensus 201 --~---~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~l~~~~~~~~~~g~~~~~~ 274 (315)
T PRK06196 201 --D---QGVRAFSVHPGGILTPLQRHLPREEQVALGWVDEHGNPIDP-GFKTPAQGAATQVWAATSPQLAGMGGLYCEDC 274 (315)
T ss_pred --C---CCcEEEEeeCCcccCCccccCChhhhhhhhhhhhhhhhhhh-hcCCHhHHHHHHHHHhcCCccCCCCCeEeCCC
Confidence 5 799999999999999987654322111 11111 12221 36899999999999998776556678777554
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=262.73 Aligned_cols=218 Identities=17% Similarity=0.163 Sum_probs=185.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
+++||+++||||++|||++++++|+++|++|++++|+.+++++..+++.+. +.++..+.+|+++++++++++++
T Consensus 2 ~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~------~~~~~~~~~D~~~~~~~~~~~~~ 75 (227)
T PRK08862 2 DIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSAL------TDNVYSFQLKDFSQESIRHLFDA 75 (227)
T ss_pred CCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc------CCCeEEEEccCCCHHHHHHHHHH
Confidence 578999999999999999999999999999999999999988888777653 45678899999999999999999
Q ss_pred HHhcCC-CeeEEEEcCCCCC---CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCCc
Q psy13409 93 ILDNES-AIHLLINNAGVMM---CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 93 i~~~~g-~iDvlInnAG~~~---~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~~ 167 (330)
+.+.++ ++|++|||||... +..+.+.++|.+.+++|+.+++.+++.++|+|.+++ +|+||++||..+.
T Consensus 76 ~~~~~g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~------- 148 (227)
T PRK08862 76 IEQQFNRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVISHDDH------- 148 (227)
T ss_pred HHHHhCCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEecCCCC-------
Confidence 999988 9999999998543 235778889999999999999999999999998764 6899999996531
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
+.+..|+++|+|+++|+++|+.|++
T Consensus 149 ----------~~~~~Y~asKaal~~~~~~la~el~--------------------------------------------- 173 (227)
T PRK08862 149 ----------QDLTGVESSNALVSGFTHSWAKELT--------------------------------------------- 173 (227)
T ss_pred ----------CCcchhHHHHHHHHHHHHHHHHHHh---------------------------------------------
Confidence 3467899999999999999999998
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecc
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYA 324 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~ 324 (330)
+ +|||||+|+||+|+|+... . . ..|.. . .+|++.++.||++ +.++||..+.
T Consensus 174 -----~---~~Irvn~v~PG~i~t~~~~--~--~--~~~~~--~-------~~~~~~~~~~l~~---~~~~tg~~~~ 224 (227)
T PRK08862 174 -----P---FNIRVGGVVPSIFSANGEL--D--A--VHWAE--I-------QDELIRNTEYIVA---NEYFSGRVVE 224 (227)
T ss_pred -----h---cCcEEEEEecCcCcCCCcc--C--H--HHHHH--H-------HHHHHhheeEEEe---cccccceEEe
Confidence 5 7999999999999999311 1 1 11110 1 1899999999995 4699998875
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=271.74 Aligned_cols=237 Identities=23% Similarity=0.254 Sum_probs=196.9
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
.+.+++||++|||||++|||+++++.|+++|++|++++|+.++++++.+++. .+..+..+.||++|.++++++
T Consensus 3 ~~~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~-------~~~~~~~~~~Dv~d~~~v~~~ 75 (296)
T PRK05872 3 PMTSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELG-------GDDRVLTVVADVTDLAAMQAA 75 (296)
T ss_pred CCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc-------CCCcEEEEEecCCCHHHHHHH
Confidence 4456899999999999999999999999999999999999988777766553 135677788999999999999
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCc
Q psy13409 90 AQEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~ 167 (330)
++++.+.++++|++|||||.... ..+.+.++|++++++|+.+++++++.++|.|.++ .|+||++||..+..+.
T Consensus 76 ~~~~~~~~g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~-~g~iv~isS~~~~~~~---- 150 (296)
T PRK05872 76 AEEAVERFGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIER-RGYVLQVSSLAAFAAA---- 150 (296)
T ss_pred HHHHHHHcCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCEEEEEeCHhhcCCC----
Confidence 99999999999999999998653 3677889999999999999999999999998765 4899999999887664
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
+....|++||+++++|+++++.|++
T Consensus 151 ----------~~~~~Y~asKaal~~~~~~l~~e~~--------------------------------------------- 175 (296)
T PRK05872 151 ----------PGMAAYCASKAGVEAFANALRLEVA--------------------------------------------- 175 (296)
T ss_pred ----------CCchHHHHHHHHHHHHHHHHHHHHH---------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHH--hhhhhccChHHHHHHHHHhhccccccccCcee
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQR--VGGLFIKSPLQGAQTTLYCALDKKCERETGLY 322 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~ 322 (330)
. .||+||+|+||+|+|++.+............... ....+..+|+|+|+.+++++.+ ...+++|..
T Consensus 176 -----~---~gi~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~va~~i~~~~~~-~~~~i~~~~ 243 (296)
T PRK05872 176 -----H---HGVTVGSAYLSWIDTDLVRDADADLPAFRELRARLPWPLRRTTSVEKCAAAFVDGIER-RARRVYAPR 243 (296)
T ss_pred -----H---HCcEEEEEecCcccchhhhhccccchhHHHHHhhCCCcccCCCCHHHHHHHHHHHHhc-CCCEEEchH
Confidence 5 7999999999999999877654331211111111 1112378999999999999866 456777654
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=265.13 Aligned_cols=238 Identities=26% Similarity=0.365 Sum_probs=196.8
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
+++++|+++||||++|||+++++.|+++|++|++++|+.+.+++..+++ ..++.++.+|++++++++++++
T Consensus 2 ~~l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~---------~~~~~~~~~D~~~~~~~~~~~~ 72 (257)
T PRK07067 2 MRLQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEI---------GPAAIAVSLDVTRQDSIDRIVA 72 (257)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh---------CCceEEEEccCCCHHHHHHHHH
Confidence 3588999999999999999999999999999999999988776665443 3458889999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCCcc
Q psy13409 92 EILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~~~ 168 (330)
.+.+.++++|++|||||.... ..+.+.++++.++++|+.+++.+++.+++.|.+++ +++||++||..+..+.
T Consensus 73 ~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~----- 147 (257)
T PRK07067 73 AAVERFGGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGRRGE----- 147 (257)
T ss_pred HHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhCCCC-----
Confidence 999999999999999997643 35678899999999999999999999999987754 4899999998876664
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
++...|++||++++.+++++++|+.
T Consensus 148 ---------~~~~~Y~~sK~a~~~~~~~la~e~~---------------------------------------------- 172 (257)
T PRK07067 148 ---------ALVSHYCATKAAVISYTQSAALALI---------------------------------------------- 172 (257)
T ss_pred ---------CCCchhhhhHHHHHHHHHHHHHHhc----------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCC-------ch--hhHHHHHHhhhhhccChHHHHHHHHHhhccccccccC
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSI-------IP--GTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERET 319 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~-------~~--~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~ 319 (330)
+ .||+||+|+||+|+|++++..... .. ............++.+|+|+|++++||+++ .+++++
T Consensus 173 ----~---~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~-~~~~~~ 244 (257)
T PRK07067 173 ----R---HGINVNAIAPGVVDTPMWDQVDALFARYENRPPGEKKRLVGEAVPLGRMGVPDDLTGMALFLASA-DADYIV 244 (257)
T ss_pred ----c---cCeEEEEEeeCcccchhhhhhhhhhhhccCCCHHHHHHHHhhcCCCCCccCHHHHHHHHHHHhCc-cccccc
Confidence 5 799999999999999986543110 01 111111122223388999999999999976 467999
Q ss_pred ceecccC
Q psy13409 320 GLYYAKA 326 (330)
Q Consensus 320 G~~~~~~ 326 (330)
|+.|.-.
T Consensus 245 g~~~~v~ 251 (257)
T PRK07067 245 AQTYNVD 251 (257)
T ss_pred CcEEeec
Confidence 9988654
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=291.93 Aligned_cols=235 Identities=20% Similarity=0.249 Sum_probs=196.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
...||++|||||++|||++++++|+++|++|++++|+.++++++.+++ +.++..+.+|++|++++++++++
T Consensus 266 ~~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~D~~~~~~~~~~~~~ 336 (520)
T PRK06484 266 AESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEAL---------GDEHLSVQADITDEAAVESAFAQ 336 (520)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---------CCceeEEEccCCCHHHHHHHHHH
Confidence 458999999999999999999999999999999999988777665443 34577899999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCC---CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 93 ILDNESAIHLLINNAGVMM---CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~---~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
+.+.++++|++|||||... +..+.+.++|++++++|+.+++++++.++|.| ++.|+||++||.++..+.
T Consensus 337 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~--~~~g~iv~isS~~~~~~~------ 408 (520)
T PRK06484 337 IQARWGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLM--SQGGVIVNLGSIASLLAL------ 408 (520)
T ss_pred HHHHcCCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHh--ccCCEEEEECchhhcCCC------
Confidence 9999999999999999863 23577889999999999999999999999999 346899999999987774
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
++...|++||+++++|+++++.|+.
T Consensus 409 --------~~~~~Y~asKaal~~l~~~la~e~~----------------------------------------------- 433 (520)
T PRK06484 409 --------PPRNAYCASKAAVTMLSRSLACEWA----------------------------------------------- 433 (520)
T ss_pred --------CCCchhHHHHHHHHHHHHHHHHHhh-----------------------------------------------
Confidence 6788999999999999999999998
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCc-hhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSII-PGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+ .||+||+|+||+|+|++........ ...+.........++.+|+|+|+.++||+++ .++++||+.+...
T Consensus 434 ---~---~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dia~~~~~l~s~-~~~~~~G~~i~vd 504 (520)
T PRK06484 434 ---P---AGIRVNTVAPGYIETPAVLALKASGRADFDSIRRRIPLGRLGDPEEVAEAIAFLASP-AASYVNGATLTVD 504 (520)
T ss_pred ---h---hCeEEEEEEeCCccCchhhhhccccHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCc-cccCccCcEEEEC
Confidence 6 7999999999999999876543211 1111122222222378999999999999965 5679999988654
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=267.60 Aligned_cols=238 Identities=20% Similarity=0.201 Sum_probs=184.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
+|+++|||+ +|||++++++|+ +|++|++++|+.+++++..++++. .+.++.++.+|++++++++++++.+ +
T Consensus 2 ~k~~lItGa-~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~~------~~~~~~~~~~Dv~d~~~i~~~~~~~-~ 72 (275)
T PRK06940 2 KEVVVVIGA-GGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLRE------AGFDVSTQEVDVSSRESVKALAATA-Q 72 (275)
T ss_pred CCEEEEECC-ChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHh------cCCeEEEEEeecCCHHHHHHHHHHH-H
Confidence 689999998 699999999996 899999999998887777766654 2457889999999999999999988 5
Q ss_pred cCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCC-C---------
Q psy13409 96 NESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDG-S--------- 165 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~-~--------- 165 (330)
.++++|++|||||... ..++++.++++|+.+++++++.++|.|.+ +|++|++||.++..+.. .
T Consensus 73 ~~g~id~li~nAG~~~-----~~~~~~~~~~vN~~g~~~l~~~~~~~m~~--~g~iv~isS~~~~~~~~~~~~~~~~~~~ 145 (275)
T PRK06940 73 TLGPVTGLVHTAGVSP-----SQASPEAILKVDLYGTALVLEEFGKVIAP--GGAGVVIASQSGHRLPALTAEQERALAT 145 (275)
T ss_pred hcCCCCEEEECCCcCC-----chhhHHHHHHHhhHHHHHHHHHHHHHHhh--CCCEEEEEecccccCcccchhhhccccc
Confidence 6789999999999753 23678999999999999999999999865 37889999988765410 0
Q ss_pred Ccccc---cccccC---CCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCC
Q psy13409 166 MHFED---INLEKG---YSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTP 239 (330)
Q Consensus 166 ~~~~~---~~~~~~---~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (330)
..... .+...+ .+.+..|++||+|++++++++|.|++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~------------------------------------- 188 (275)
T PRK06940 146 TPTEELLSLPFLQPDAIEDSLHAYQIAKRANALRVMAEAVKWG------------------------------------- 188 (275)
T ss_pred cccccccccccccccccCCccchhHHHHHHHHHHHHHHHHHHc-------------------------------------
Confidence 00000 000000 02467899999999999999999998
Q ss_pred CcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCc--hhhHHHH--HHhhhhhccChHHHHHHHHHhhccccc
Q psy13409 240 TNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSII--PGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKC 315 (330)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~ 315 (330)
+ .|||||+|+||+|+|++........ ...+... .++++ +.+|+|+|++++||+++ .+
T Consensus 189 -------------~---~gIrvn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~p~~r--~~~peeia~~~~fL~s~-~~ 249 (275)
T PRK06940 189 -------------E---RGARINSISPGIISTPLAQDELNGPRGDGYRNMFAKSPAGR--PGTPDEIAALAEFLMGP-RG 249 (275)
T ss_pred -------------c---CCeEEEEeccCcCcCccchhhhcCCchHHHHHHhhhCCccc--CCCHHHHHHHHHHHcCc-cc
Confidence 6 7999999999999999865422111 1111111 23444 89999999999999865 56
Q ss_pred cccCceeccc
Q psy13409 316 ERETGLYYAK 325 (330)
Q Consensus 316 ~~~~G~~~~~ 325 (330)
+++||+.+.-
T Consensus 250 ~~itG~~i~v 259 (275)
T PRK06940 250 SFITGSDFLV 259 (275)
T ss_pred CcccCceEEE
Confidence 7999987754
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=262.89 Aligned_cols=241 Identities=22% Similarity=0.242 Sum_probs=200.5
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
..+++|++|||||++|||.++++.|+++|++|++++|+.+.+++..+.+.. .+.++.++.+|++++++++++++
T Consensus 6 ~~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~------~~~~~~~~~~D~~~~~~~~~~~~ 79 (263)
T PRK07814 6 FRLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRA------AGRRAHVVAADLAHPEATAGLAG 79 (263)
T ss_pred ccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh------cCCcEEEEEccCCCHHHHHHHHH
Confidence 358899999999999999999999999999999999998887777776654 25678899999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhh-hCCCeEEEEcCCCcccCCCCCcc
Q psy13409 92 EILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIK-SAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~-~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
++.+.++++|++|||||.... ..+.+.++++.++++|+.+++.+++.+.++|.+ .+.|+||++||..+..+.
T Consensus 80 ~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~~~~~~~----- 154 (263)
T PRK07814 80 QAVEAFGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISSTMGRLAG----- 154 (263)
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEccccccCCC-----
Confidence 999999999999999997543 256788999999999999999999999999987 456899999999887664
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
++...|+++|++++.++++++.|+.
T Consensus 155 ---------~~~~~Y~~sK~a~~~~~~~~~~e~~---------------------------------------------- 179 (263)
T PRK07814 155 ---------RGFAAYGTAKAALAHYTRLAALDLC---------------------------------------------- 179 (263)
T ss_pred ---------CCCchhHHHHHHHHHHHHHHHHHHC----------------------------------------------
Confidence 6778999999999999999999987
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
++|+||+|+||+|+|++.....................++.+|+|+|++++|++++ ...+++|+++...+
T Consensus 180 --------~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~-~~~~~~g~~~~~~~ 249 (263)
T PRK07814 180 --------PRIRVNAIAPGSILTSALEVVAANDELRAPMEKATPLRRLGDPEDIAAAAVYLASP-AGSYLTGKTLEVDG 249 (263)
T ss_pred --------CCceEEEEEeCCCcCchhhhccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCc-cccCcCCCEEEECC
Confidence 56999999999999998754332222222222222222368999999999999855 45689999886643
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=263.47 Aligned_cols=239 Identities=25% Similarity=0.305 Sum_probs=194.4
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
.++++|+++||||++|||++++++|+++|++|++++|+.. ..+..+++.. .+.++.++.+|++++++++++++
T Consensus 2 ~~~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~-~~~~~~~~~~------~~~~~~~~~~Dl~~~~~v~~~~~ 74 (263)
T PRK08226 2 GKLTGKTALITGALQGIGEGIARVFARHGANLILLDISPE-IEKLADELCG------RGHRCTAVVADVRDPASVAAAIK 74 (263)
T ss_pred CCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHH-HHHHHHHHHH------hCCceEEEECCCCCHHHHHHHHH
Confidence 4678999999999999999999999999999999999874 3344444433 24578899999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 92 EILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
++.+.++++|++|||||.... ..+.+.+++++.+++|+.+++.+++.+++.|.+.+.++||++||..+....
T Consensus 75 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~------ 148 (263)
T PRK08226 75 RAKEKEGRIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMVA------ 148 (263)
T ss_pred HHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhcccC------
Confidence 999999999999999997643 256678899999999999999999999999887777899999997763221
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
.+.+..|+++|+++++++++++.++.
T Consensus 149 -------~~~~~~Y~~sK~a~~~~~~~la~~~~----------------------------------------------- 174 (263)
T PRK08226 149 -------DPGETAYALTKAAIVGLTKSLAVEYA----------------------------------------------- 174 (263)
T ss_pred -------CCCcchHHHHHHHHHHHHHHHHHHhc-----------------------------------------------
Confidence 25677899999999999999999998
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCC-----Cch-hhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCce
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDS-----IIP-GTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGL 321 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~-----~~~-~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~ 321 (330)
. +||+||+|+||+|+|++.+.... ... ...... .++++ +.+|+|+|+.++||+++ .+.+++|+
T Consensus 175 ---~---~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~va~~~~~l~~~-~~~~~~g~ 245 (263)
T PRK08226 175 ---Q---SGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIPLRR--LADPLEVGELAAFLASD-ESSYLTGT 245 (263)
T ss_pred ---c---cCcEEEEEecCcccCHHHHhhhhhccCCCcHHHHHHHhccCCCCC--CCCHHHHHHHHHHHcCc-hhcCCcCc
Confidence 5 79999999999999998754321 111 111111 13333 78999999999999865 56799999
Q ss_pred ecccC
Q psy13409 322 YYAKA 326 (330)
Q Consensus 322 ~~~~~ 326 (330)
.+-..
T Consensus 246 ~i~~d 250 (263)
T PRK08226 246 QNVID 250 (263)
T ss_pred eEeEC
Confidence 87654
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=263.03 Aligned_cols=237 Identities=25% Similarity=0.291 Sum_probs=195.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEec-ChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACR-SLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R-~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
++|+++||||++|||++++++|+++|++|+++.+ +.+.+++..+++.. .+.++.++.+|+++.++++++++++
T Consensus 1 ~~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Dl~~~~~~~~~~~~~ 74 (256)
T PRK12743 1 MAQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRS------HGVRAEIRQLDLSDLPEGAQALDKL 74 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHh------cCCceEEEEccCCCHHHHHHHHHHH
Confidence 4689999999999999999999999999988865 55666666666654 3668899999999999999999999
Q ss_pred HhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCCcccc
Q psy13409 94 LDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
.+.++++|++|||+|..... .+.+.+++++++++|+.+++.+++++.+.|.+++ .|+||++||..+..+.
T Consensus 75 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~~~------- 147 (256)
T PRK12743 75 IQRLGRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEHTPL------- 147 (256)
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeeccccCCC-------
Confidence 99999999999999986532 5678899999999999999999999999997654 5899999998876664
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
++...|+++|+++++++++++.++.
T Consensus 148 -------~~~~~Y~~sK~a~~~l~~~la~~~~------------------------------------------------ 172 (256)
T PRK12743 148 -------PGASAYTAAKHALGGLTKAMALELV------------------------------------------------ 172 (256)
T ss_pred -------CCcchhHHHHHHHHHHHHHHHHHhh------------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred CCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 251 PPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 251 ~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
. .||+||+|+||+++|++................+.++ ..+|+|+|+.++||+++ .+.+++|+++....
T Consensus 173 --~---~~i~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~--~~~~~dva~~~~~l~~~-~~~~~~G~~~~~dg 241 (256)
T PRK12743 173 --E---HGILVNAVAPGAIATPMNGMDDSDVKPDSRPGIPLGR--PGDTHEIASLVAWLCSE-GASYTTGQSLIVDG 241 (256)
T ss_pred --h---hCeEEEEEEeCCccCccccccChHHHHHHHhcCCCCC--CCCHHHHHHHHHHHhCc-cccCcCCcEEEECC
Confidence 5 7999999999999999875432111111111123344 78999999999999865 56789999886543
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=259.96 Aligned_cols=237 Identities=20% Similarity=0.218 Sum_probs=188.5
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecC-hhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRS-LEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~-~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
+++++|+++||||++|||+++++.|+++|++|+++.++ .+.+++....+ +.++.++.+|+++++++..++
T Consensus 1 ~~l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~~~~~~~~~~---------~~~~~~~~~D~~~~~~~~~~~ 71 (253)
T PRK08642 1 MQISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALADEL---------GDRAIALQADVTDREQVQAMF 71 (253)
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHh---------CCceEEEEcCCCCHHHHHHHH
Confidence 35789999999999999999999999999999887654 44443332221 356889999999999999999
Q ss_pred HHHHhcCCC-eeEEEEcCCCCC--------CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCccc
Q psy13409 91 QEILDNESA-IHLLINNAGVMM--------CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTW 161 (330)
Q Consensus 91 ~~i~~~~g~-iDvlInnAG~~~--------~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~ 161 (330)
+++.+.++. +|++|||||... +..+.+.+++++.+++|+.+++.+++.+++.|.+.+.|+||++||..+..
T Consensus 72 ~~~~~~~g~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~ 151 (253)
T PRK08642 72 ATATEHFGKPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINIGTNLFQN 151 (253)
T ss_pred HHHHHHhCCCCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeEEEEECCccccC
Confidence 999888887 999999998631 23567889999999999999999999999999877779999999976543
Q ss_pred CCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCc
Q psy13409 162 GDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTN 241 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (330)
+ ..++..|++||+|+++|++++|+++.
T Consensus 152 ~--------------~~~~~~Y~~sK~a~~~l~~~la~~~~--------------------------------------- 178 (253)
T PRK08642 152 P--------------VVPYHDYTTAKAALLGLTRNLAAELG--------------------------------------- 178 (253)
T ss_pred C--------------CCCccchHHHHHHHHHHHHHHHHHhC---------------------------------------
Confidence 3 24567899999999999999999998
Q ss_pred ccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCce
Q psy13409 242 HYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGL 321 (330)
Q Consensus 242 ~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~ 321 (330)
. .||+||+|+||+|+|+....... ..............++.+|+|+|++++||+++ .+++++|+
T Consensus 179 -----------~---~~i~v~~i~pG~v~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~-~~~~~~G~ 242 (253)
T PRK08642 179 -----------P---YGITVNMVSGGLLRTTDASAATP-DEVFDLIAATTPLRKVTTPQEFADAVLFFASP-WARAVTGQ 242 (253)
T ss_pred -----------c---cCeEEEEEeecccCCchhhccCC-HHHHHHHHhcCCcCCCCCHHHHHHHHHHHcCc-hhcCccCC
Confidence 5 89999999999999986543221 11111122222222389999999999999976 45799999
Q ss_pred ecccC
Q psy13409 322 YYAKA 326 (330)
Q Consensus 322 ~~~~~ 326 (330)
.|--.
T Consensus 243 ~~~vd 247 (253)
T PRK08642 243 NLVVD 247 (253)
T ss_pred EEEeC
Confidence 87543
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=263.47 Aligned_cols=244 Identities=21% Similarity=0.211 Sum_probs=198.1
Q ss_pred cCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHH
Q psy13409 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRK 88 (330)
Q Consensus 9 ~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~ 88 (330)
+.++++++|+++||||++|||.+++++|+++|++|++++|+.+.+++..+.+... +.++.++.+|+++++++++
T Consensus 2 ~~~~~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~i~~ 75 (264)
T PRK07576 2 TTMFDFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQA------GPEGLGVSADVRDYAAVEA 75 (264)
T ss_pred CccccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh------CCceEEEECCCCCHHHHHH
Confidence 4556899999999999999999999999999999999999988877776666542 4467889999999999999
Q ss_pred HHHHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCC
Q psy13409 89 CAQEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSM 166 (330)
Q Consensus 89 l~~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~ 166 (330)
+++++.+.++++|++|||||.... ..+.+.+++++.+++|+.+++.+++++++.|.++ +|+||++||..+..+.
T Consensus 76 ~~~~~~~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~-~g~iv~iss~~~~~~~--- 151 (264)
T PRK07576 76 AFAQIADEFGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRP-GASIIQISAPQAFVPM--- 151 (264)
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCEEEEECChhhccCC---
Confidence 999999989999999999986542 2567888999999999999999999999998754 4899999998876553
Q ss_pred cccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccc
Q psy13409 167 HFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKN 246 (330)
Q Consensus 167 ~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (330)
+.+..|+++|++++.|+++++.|+.
T Consensus 152 -----------~~~~~Y~asK~a~~~l~~~la~e~~-------------------------------------------- 176 (264)
T PRK07576 152 -----------PMQAHVCAAKAGVDMLTRTLALEWG-------------------------------------------- 176 (264)
T ss_pred -----------CCccHHHHHHHHHHHHHHHHHHHhh--------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred cccCCCCCCCCceeEEEeeCcccc-cCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceeccc
Q psy13409 247 VLFHPPGANITNVNTYAVHPGVVD-TELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAK 325 (330)
Q Consensus 247 ~~~~~~~~~~~~i~v~~v~pG~v~-t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~ 325 (330)
. +||+|++|+||+++ |+......................+..+|+|+|+.+++|+++ ...+++|+++..
T Consensus 177 ------~---~gi~v~~v~pg~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~-~~~~~~G~~~~~ 246 (264)
T PRK07576 177 ------P---EGIRVNSIVPGPIAGTEGMARLAPSPELQAAVAQSVPLKRNGTKQDIANAALFLASD-MASYITGVVLPV 246 (264)
T ss_pred ------h---cCeEEEEEecccccCcHHHhhcccCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCh-hhcCccCCEEEE
Confidence 5 79999999999997 664433222111111111111122378999999999999965 456899998755
Q ss_pred CC
Q psy13409 326 AD 327 (330)
Q Consensus 326 ~~ 327 (330)
..
T Consensus 247 ~g 248 (264)
T PRK07576 247 DG 248 (264)
T ss_pred CC
Confidence 43
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=267.47 Aligned_cols=230 Identities=27% Similarity=0.313 Sum_probs=190.9
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
+++++|+++||||++|||+++++.|+++|++|++++|+..... ..++.++.+|++++++++++++
T Consensus 5 ~~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~~---------------~~~~~~~~~D~~~~~~~~~~~~ 69 (266)
T PRK06171 5 LNLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDGQ---------------HENYQFVPTDVSSAEEVNHTVA 69 (266)
T ss_pred ccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCccccc---------------cCceEEEEccCCCHHHHHHHHH
Confidence 4689999999999999999999999999999999999875421 2367889999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCCC-----------CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcc
Q psy13409 92 EILDNESAIHLLINNAGVMMCP-----------RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHT 160 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~-----------~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~ 160 (330)
.+.+.++++|++|||||...+. .+.+.++|++++++|+.+++.++++++++|.+++.|+||++||..+.
T Consensus 70 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~ 149 (266)
T PRK06171 70 EIIEKFGRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEAGL 149 (266)
T ss_pred HHHHHcCCCCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCcEEEEEcccccc
Confidence 9999999999999999975321 25688999999999999999999999999988778999999999887
Q ss_pred cCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCC
Q psy13409 161 WGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPT 240 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (330)
.+. ++...|+++|+|+++|+++++.|++
T Consensus 150 ~~~--------------~~~~~Y~~sK~a~~~l~~~la~e~~-------------------------------------- 177 (266)
T PRK06171 150 EGS--------------EGQSCYAATKAALNSFTRSWAKELG-------------------------------------- 177 (266)
T ss_pred CCC--------------CCCchhHHHHHHHHHHHHHHHHHhh--------------------------------------
Confidence 664 6778999999999999999999998
Q ss_pred cccccccccCCCCCCCCceeEEEeeCcccc-cCcccccCC---------C-chhhHHH----HHHhhhhhccChHHHHHH
Q psy13409 241 NHYCKNVLFHPPGANITNVNTYAVHPGVVD-TELSRHFDS---------I-IPGTAWL----YQRVGGLFIKSPLQGAQT 305 (330)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~-t~~~~~~~~---------~-~~~~~~~----~~~~~~~~~~~~~e~a~~ 305 (330)
+ .||+||+|+||+++ |++...... . ....+.. ..++++ +.+|+|+|++
T Consensus 178 ------------~---~gi~v~~v~pG~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r--~~~~~eva~~ 240 (266)
T PRK06171 178 ------------K---HNIRVVGVAPGILEATGLRTPEYEEALAYTRGITVEQLRAGYTKTSTIPLGR--SGKLSEVADL 240 (266)
T ss_pred ------------h---cCeEEEEEeccccccCCCcChhhhhhhccccCCCHHHHHhhhcccccccCCC--CCCHHHhhhh
Confidence 6 79999999999997 665331110 0 0111111 124444 8999999999
Q ss_pred HHHhhccccccccCceecccC
Q psy13409 306 TLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 306 ~~~l~~~~~~~~~~G~~~~~~ 326 (330)
++||+++ .++++||+.+...
T Consensus 241 ~~fl~s~-~~~~itG~~i~vd 260 (266)
T PRK06171 241 VCYLLSD-RASYITGVTTNIA 260 (266)
T ss_pred eeeeecc-ccccceeeEEEec
Confidence 9999865 5689999988654
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=262.81 Aligned_cols=233 Identities=24% Similarity=0.314 Sum_probs=191.3
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
+..+++||++|||||++|||+++++.|+++|++|++++|+.+.. ...++.++.+|++++++++++
T Consensus 3 ~~~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~~---------------~~~~~~~~~~D~~~~~~~~~~ 67 (260)
T PRK06523 3 FFLELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPDD---------------LPEGVEFVAADLTTAEGCAAV 67 (260)
T ss_pred cCcCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhhh---------------cCCceeEEecCCCCHHHHHHH
Confidence 44578999999999999999999999999999999999986421 134678899999999999999
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCC----CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCC
Q psy13409 90 AQEILDNESAIHLLINNAGVMMC----PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGS 165 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~----~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~ 165 (330)
++++.+.++++|++|||||.... ..+.+.++|++.+++|+.+++.+++.+++.|.+++.|+||++||..+..+.
T Consensus 68 ~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~-- 145 (260)
T PRK06523 68 ARAVLERLGGVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGSGVIIHVTSIQRRLPL-- 145 (260)
T ss_pred HHHHHHHcCCCCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEecccccCCC--
Confidence 99999999999999999996532 245788999999999999999999999999988777999999998876552
Q ss_pred CcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccc
Q psy13409 166 MHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCK 245 (330)
Q Consensus 166 ~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (330)
......|+++|++++.|+++++.++.
T Consensus 146 -----------~~~~~~Y~~sK~a~~~l~~~~a~~~~------------------------------------------- 171 (260)
T PRK06523 146 -----------PESTTAYAAAKAALSTYSKSLSKEVA------------------------------------------- 171 (260)
T ss_pred -----------CCCcchhHHHHHHHHHHHHHHHHHHh-------------------------------------------
Confidence 13678899999999999999999998
Q ss_pred ccccCCCCCCCCceeEEEeeCcccccCcccccCCC---------chhhHHHH-----HHhhhhhccChHHHHHHHHHhhc
Q psy13409 246 NVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSI---------IPGTAWLY-----QRVGGLFIKSPLQGAQTTLYCAL 311 (330)
Q Consensus 246 ~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~---------~~~~~~~~-----~~~~~~~~~~~~e~a~~~~~l~~ 311 (330)
+ .||+||+|+||+|+|++....... ....+... .++++ +.+|+|+|+.++||++
T Consensus 172 -------~---~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~va~~~~~l~s 239 (260)
T PRK06523 172 -------P---KGVRVNTVSPGWIETEAAVALAERLAEAAGTDYEGAKQIIMDSLGGIPLGR--PAEPEEVAELIAFLAS 239 (260)
T ss_pred -------h---cCcEEEEEecCcccCccHHHHHHHHHhhcCCCHHHHHHHHHHHhccCccCC--CCCHHHHHHHHHHHhC
Confidence 5 799999999999999986432110 00001110 13333 7899999999999996
Q ss_pred cccccccCceecccC
Q psy13409 312 DKKCERETGLYYAKA 326 (330)
Q Consensus 312 ~~~~~~~~G~~~~~~ 326 (330)
+ .++++||+.+.-.
T Consensus 240 ~-~~~~~~G~~~~vd 253 (260)
T PRK06523 240 D-RAASITGTEYVID 253 (260)
T ss_pred c-ccccccCceEEec
Confidence 5 5679999987543
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-34 Score=259.26 Aligned_cols=242 Identities=26% Similarity=0.375 Sum_probs=201.7
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
...++++|+++||||+||||++++++|+++|++|++++|+.+.++++..++... ..++.++.+|+++++++.++
T Consensus 3 ~~~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~~~~~~~ 76 (258)
T PRK06949 3 RSINLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAE------GGAAHVVSLDVTDYQSIKAA 76 (258)
T ss_pred cccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEecCCCHHHHHHH
Confidence 345689999999999999999999999999999999999998887777766542 45788999999999999999
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC--------CCeEEEEcCCCc
Q psy13409 90 AQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA--------PARIINLSSLAH 159 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~--------~g~IV~iSS~~~ 159 (330)
++++.+.++++|++|||+|..... .+.+.++++.++++|+.+++.+++++++.|.++. .++||++||..+
T Consensus 77 ~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~ 156 (258)
T PRK06949 77 VAHAETEAGTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAG 156 (258)
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECcccc
Confidence 999999999999999999976432 4567789999999999999999999999987664 479999999877
Q ss_pred ccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCC
Q psy13409 160 TWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTP 239 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (330)
..+. +...+|+++|++++.++++++.++.
T Consensus 157 ~~~~--------------~~~~~Y~~sK~a~~~~~~~la~~~~------------------------------------- 185 (258)
T PRK06949 157 LRVL--------------PQIGLYCMSKAAVVHMTRAMALEWG------------------------------------- 185 (258)
T ss_pred cCCC--------------CCccHHHHHHHHHHHHHHHHHHHHH-------------------------------------
Confidence 6553 5677899999999999999999998
Q ss_pred CcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccC
Q psy13409 240 TNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERET 319 (330)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~ 319 (330)
+ .||+|++|+||+|+|++........ ........+...++..|+|+|+.++||+++ .+++++
T Consensus 186 -------------~---~~i~v~~v~pG~v~t~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~-~~~~~~ 247 (258)
T PRK06949 186 -------------R---HGINVNAICPGYIDTEINHHHWETE-QGQKLVSMLPRKRVGKPEDLDGLLLLLAAD-ESQFIN 247 (258)
T ss_pred -------------h---cCeEEEEEeeCCCcCCcchhccChH-HHHHHHhcCCCCCCcCHHHHHHHHHHHhCh-hhcCCC
Confidence 5 7999999999999999876443221 112222333334489999999999999865 567999
Q ss_pred ceecccC
Q psy13409 320 GLYYAKA 326 (330)
Q Consensus 320 G~~~~~~ 326 (330)
|+++...
T Consensus 248 G~~i~~d 254 (258)
T PRK06949 248 GAIISAD 254 (258)
T ss_pred CcEEEeC
Confidence 9998543
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-34 Score=260.18 Aligned_cols=233 Identities=22% Similarity=0.237 Sum_probs=192.1
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
+++++||+++||||+++||+++++.|+++|++|++++|+..+..+..+.+ +.++.++.+|+++.+++++++
T Consensus 5 ~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~---------~~~~~~~~~Dl~~~~~~~~~~ 75 (255)
T PRK05717 5 NPGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKAL---------GENAWFIAMDVADEAQVAAGV 75 (255)
T ss_pred CcccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHc---------CCceEEEEccCCCHHHHHHHH
Confidence 46789999999999999999999999999999999999877655543322 346889999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCC----CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCC
Q psy13409 91 QEILDNESAIHLLINNAGVMMC----PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSM 166 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~----~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~ 166 (330)
+++.+.++++|++|||||...+ ..+.+.++|++.+++|+.+++.+++.+.|.|.+. .|+||++||..+..+.
T Consensus 76 ~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~g~ii~~sS~~~~~~~--- 151 (255)
T PRK05717 76 AEVLGQFGRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAH-NGAIVNLASTRARQSE--- 151 (255)
T ss_pred HHHHHHhCCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CcEEEEEcchhhcCCC---
Confidence 9999999999999999998643 2467889999999999999999999999998765 4899999999887664
Q ss_pred cccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccc
Q psy13409 167 HFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKN 246 (330)
Q Consensus 167 ~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (330)
+.+..|+++|+|++.+++++++++.
T Consensus 152 -----------~~~~~Y~~sKaa~~~~~~~la~~~~-------------------------------------------- 176 (255)
T PRK05717 152 -----------PDTEAYAASKGGLLALTHALAISLG-------------------------------------------- 176 (255)
T ss_pred -----------CCCcchHHHHHHHHHHHHHHHHHhc--------------------------------------------
Confidence 5677899999999999999999987
Q ss_pred cccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHH--HHHhhhhhccChHHHHHHHHHhhccccccccCceecc
Q psy13409 247 VLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWL--YQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYA 324 (330)
Q Consensus 247 ~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~ 324 (330)
++|+||+|+||+|+|++...... .+..... ..+.++ +.+|+|+|+.+++++++ .+.+++|+.+.
T Consensus 177 ----------~~i~v~~i~Pg~i~t~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~va~~~~~l~~~-~~~~~~g~~~~ 242 (255)
T PRK05717 177 ----------PEIRVNAVSPGWIDARDPSQRRA-EPLSEADHAQHPAGR--VGTVEDVAAMVAWLLSR-QAGFVTGQEFV 242 (255)
T ss_pred ----------CCCEEEEEecccCcCCccccccc-hHHHHHHhhcCCCCC--CcCHHHHHHHHHHHcCc-hhcCccCcEEE
Confidence 46999999999999997543221 1111111 123344 78999999999999865 45689998764
Q ss_pred c
Q psy13409 325 K 325 (330)
Q Consensus 325 ~ 325 (330)
-
T Consensus 243 ~ 243 (255)
T PRK05717 243 V 243 (255)
T ss_pred E
Confidence 4
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=266.10 Aligned_cols=253 Identities=43% Similarity=0.656 Sum_probs=201.2
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
+.+++||+++||||++|||++++++|+++|++|++++|+.++.++..+.+.... .+.++.++.+|+++.+++++++
T Consensus 11 ~~~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~~Dl~d~~~v~~~~ 86 (306)
T PRK06197 11 IPDQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAAT----PGADVTLQELDLTSLASVRAAA 86 (306)
T ss_pred cccCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC----CCCceEEEECCCCCHHHHHHHH
Confidence 467899999999999999999999999999999999999888777776665432 2457889999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 91 QEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
+++.+.++++|++|||||...+....+.++++..+++|+.+++.+++.+++.|.+.+.++||++||.++.... .....+
T Consensus 87 ~~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~-~~~~~~ 165 (306)
T PRK06197 87 DALRAAYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVPGSRVVTVSSGGHRIRA-AIHFDD 165 (306)
T ss_pred HHHHhhCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCCCCEEEEECCHHHhccC-CCCccc
Confidence 9999999999999999998766556777889999999999999999999999988777899999998764421 111222
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
.....++++..+|++||+|+++|+++++.+++
T Consensus 166 ~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~l~------------------------------------------------ 197 (306)
T PRK06197 166 LQWERRYNRVAAYGQSKLANLLFTYELQRRLA------------------------------------------------ 197 (306)
T ss_pred cCcccCCCcHHHHHHHHHHHHHHHHHHHHHhh------------------------------------------------
Confidence 22233456778999999999999999999997
Q ss_pred CCCCCCCceeEEE--eeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 251 PPGANITNVNTYA--VHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 251 ~~~~~~~~i~v~~--v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
. .+++|++ ++||+|+|++.+..... ........+.....++++.+..+++++.++ +..+|.|+...
T Consensus 198 --~---~~i~v~~v~~~PG~v~T~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~g~~~~~~ 265 (306)
T PRK06197 198 --A---AGATTIAVAAHPGVSNTELARNLPRA---LRPVATVLAPLLAQSPEMGALPTLRAATDP--AVRGGQYYGPD 265 (306)
T ss_pred --c---CCCCeEEEEeCCCcccCcccccCcHH---HHHHHHHHHhhhcCCHHHHHHHHHHHhcCC--CcCCCeEEccC
Confidence 4 5666555 57999999998765332 122222233323568899999999998654 35689999754
|
|
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=260.12 Aligned_cols=211 Identities=21% Similarity=0.249 Sum_probs=181.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
|+++||||++|||++++++|+ +|++|++++|+.++++++.+++++. ....+.++.||++|+++++++++++.+.
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l~~~-----~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 74 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDLRQR-----GATSVHVLSFDAQDLDTHRELVKQTQEL 74 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhc-----cCCceEEEEcccCCHHHHHHHHHHHHHh
Confidence 579999999999999999999 5999999999999998888887653 2345788999999999999999999999
Q ss_pred CCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCCccccccc
Q psy13409 97 ESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSMHFEDINL 173 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~~~~~~~~ 173 (330)
++++|++|||||..... .+.+.+.+.+++++|+.+++.+++.++|.|.+++ +|+||++||.++..+.
T Consensus 75 ~g~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~---------- 144 (246)
T PRK05599 75 AGEISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGWRAR---------- 144 (246)
T ss_pred cCCCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEeccccccCC----------
Confidence 99999999999986432 3566677888899999999999999999998764 6999999999887664
Q ss_pred ccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCC
Q psy13409 174 EKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPG 253 (330)
Q Consensus 174 ~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (330)
+....|++||+|+++|+++++.|+. +
T Consensus 145 ----~~~~~Y~asKaa~~~~~~~la~el~--------------------------------------------------~ 170 (246)
T PRK05599 145 ----RANYVYGSTKAGLDAFCQGLADSLH--------------------------------------------------G 170 (246)
T ss_pred ----cCCcchhhHHHHHHHHHHHHHHHhc--------------------------------------------------C
Confidence 5678999999999999999999998 6
Q ss_pred CCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccc
Q psy13409 254 ANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDK 313 (330)
Q Consensus 254 ~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~ 313 (330)
.||+||+|+||+|+|++....... ....+|+|+|+.+++++..+
T Consensus 171 ---~~I~v~~v~PG~v~T~~~~~~~~~-------------~~~~~pe~~a~~~~~~~~~~ 214 (246)
T PRK05599 171 ---SHVRLIIARPGFVIGSMTTGMKPA-------------PMSVYPRDVAAAVVSAITSS 214 (246)
T ss_pred ---CCceEEEecCCcccchhhcCCCCC-------------CCCCCHHHHHHHHHHHHhcC
Confidence 799999999999999986543211 01368999999999999764
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=257.75 Aligned_cols=223 Identities=19% Similarity=0.153 Sum_probs=182.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
+|++|||||++|||++++++|+++|++|++++|+.+... +.+.. ..+.++.+|++++++++++++++.+
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~---~~~~~--------~~~~~~~~D~~~~~~~~~~~~~~~~ 70 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAI---DGLRQ--------AGAQCIQADFSTNAGIMAFIDELKQ 70 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhHH---HHHHH--------cCCEEEEcCCCCHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999876432 23322 1257889999999999999999999
Q ss_pred cCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC--CCeEEEEcCCCcccCCCCCccccc
Q psy13409 96 NESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA--PARIINLSSLAHTWGDGSMHFEDI 171 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~--~g~IV~iSS~~~~~~~~~~~~~~~ 171 (330)
.++++|++|||||.... ..+.+.++|++.+++|+.+++.+++.+++.|.+.+ .++||++||..+..+.
T Consensus 71 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~-------- 142 (236)
T PRK06483 71 HTDGLRAIIHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVVEKGS-------- 142 (236)
T ss_pred hCCCccEEEECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhhccCC--------
Confidence 99999999999997533 35667899999999999999999999999998765 5899999998876553
Q ss_pred ccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCC
Q psy13409 172 NLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHP 251 (330)
Q Consensus 172 ~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (330)
+.+.+|++||+|+++|++++++|++
T Consensus 143 ------~~~~~Y~asKaal~~l~~~~a~e~~------------------------------------------------- 167 (236)
T PRK06483 143 ------DKHIAYAASKAALDNMTLSFAAKLA------------------------------------------------- 167 (236)
T ss_pred ------CCCccHHHHHHHHHHHHHHHHHHHC-------------------------------------------------
Confidence 5678999999999999999999997
Q ss_pred CCCCCCceeEEEeeCcccccCcccccCCCchhhHHH--HHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 252 PGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWL--YQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 252 ~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
++||||+|+||+|.|+... .....+.. ..++++ ..+|+|+|+.+.||++ ..++||+.+...
T Consensus 168 -----~~irvn~v~Pg~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~va~~~~~l~~---~~~~~G~~i~vd 230 (236)
T PRK06483 168 -----PEVKVNSIAPALILFNEGD----DAAYRQKALAKSLLKI--EPGEEEIIDLVDYLLT---SCYVTGRSLPVD 230 (236)
T ss_pred -----CCcEEEEEccCceecCCCC----CHHHHHHHhccCcccc--CCCHHHHHHHHHHHhc---CCCcCCcEEEeC
Confidence 4699999999999876421 11111111 123444 7899999999999995 469999987654
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=257.06 Aligned_cols=240 Identities=23% Similarity=0.239 Sum_probs=198.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEE-EecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIM-ACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil-~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
|++++++||||++|||++++++|+++|++|++ ..|+.+.++++.++++. .+.++.++.+|+++++++.+++++
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~------~~~~~~~~~~D~~~~~~~~~~~~~ 75 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEA------LGRKALAVKANVGDVEKIKEMFAQ 75 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh------cCCeEEEEEcCCCCHHHHHHHHHH
Confidence 57899999999999999999999999999876 57888777777777654 256789999999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCC--CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 93 ILDNESAIHLLINNAGVMM--CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~--~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
+.+.++++|++|||+|... +..+.+.++++..+++|+.+++.+++++++.|.+++.|+||++||..+..+.
T Consensus 76 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~------- 148 (250)
T PRK08063 76 IDEEFGRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSSLGSIRYL------- 148 (250)
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhccCC-------
Confidence 9999999999999999754 3367788999999999999999999999999988878999999998765553
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
+....|+++|++++.|++++++++.
T Consensus 149 -------~~~~~y~~sK~a~~~~~~~~~~~~~------------------------------------------------ 173 (250)
T PRK08063 149 -------ENYTTVGVSKAALEALTRYLAVELA------------------------------------------------ 173 (250)
T ss_pred -------CCccHHHHHHHHHHHHHHHHHHHHh------------------------------------------------
Confidence 5678999999999999999999998
Q ss_pred CCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 251 PPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 251 ~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
. .||++|+|+||+|+|++...........+.........++.+++|+|+.++++++++ ..+++|+.+...+
T Consensus 174 --~---~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~~~~~~-~~~~~g~~~~~~g 244 (250)
T PRK08063 174 --P---KGIAVNAVSGGAVDTDALKHFPNREELLEDARAKTPAGRMVEPEDVANAVLFLCSPE-ADMIRGQTIIVDG 244 (250)
T ss_pred --H---hCeEEEeEecCcccCchhhhccCchHHHHHHhcCCCCCCCcCHHHHHHHHHHHcCch-hcCccCCEEEECC
Confidence 5 799999999999999987654332222111111111223789999999999998664 4688999886544
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=254.70 Aligned_cols=242 Identities=27% Similarity=0.346 Sum_probs=204.0
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
+..+++|+++||||+|+||++++++|+++|++|++++|+.+++++..+.++.. +.++.++.+|+++++++++++
T Consensus 2 ~~~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~ 75 (250)
T PRK12939 2 ASNLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAA------GGRAHAIAADLADPASVQRFF 75 (250)
T ss_pred CCCCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEccCCCHHHHHHHH
Confidence 44578999999999999999999999999999999999988888777776542 467899999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 91 QEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
+++.+.++++|++|||+|..... .+.+.++++..+++|+.+++.+++.+.+.+.+++.|++|++||..+..+.
T Consensus 76 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~----- 150 (250)
T PRK12939 76 DAAAAALGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLASDTALWGA----- 150 (250)
T ss_pred HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECchhhccCC-----
Confidence 99999889999999999986543 56788899999999999999999999999988778999999998877664
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
+....|+++|++++.+++.++.+++
T Consensus 151 ---------~~~~~y~~sK~~~~~~~~~l~~~~~---------------------------------------------- 175 (250)
T PRK12939 151 ---------PKLGAYVASKGAVIGMTRSLARELG---------------------------------------------- 175 (250)
T ss_pred ---------CCcchHHHHHHHHHHHHHHHHHHHh----------------------------------------------
Confidence 5677899999999999999999998
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
. ++|+|++|+||+|+|++.+..... .............++.+|+|+|+++++++.. .+++++|++|....
T Consensus 176 ----~---~~i~v~~v~pg~v~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~-~~~~~~G~~i~~~g 245 (250)
T PRK12939 176 ----G---RGITVNAIAPGLTATEATAYVPAD-ERHAYYLKGRALERLQVPDDVAGAVLFLLSD-AARFVTGQLLPVNG 245 (250)
T ss_pred ----h---hCEEEEEEEECCCCCccccccCCh-HHHHHHHhcCCCCCCCCHHHHHHHHHHHhCc-cccCccCcEEEECC
Confidence 5 799999999999999987654321 1122222222233478999999999999865 46789999987654
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=263.32 Aligned_cols=230 Identities=22% Similarity=0.273 Sum_probs=191.4
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
..++||+++||||++|||++++++|+++|++|++++|+.+.+++..+++.. .+.++.++.+|++++++++++++
T Consensus 2 ~~~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~------~~~~~~~~~~Dv~d~~~v~~~~~ 75 (275)
T PRK05876 2 DGFPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRA------EGFDVHGVMCDVRHREEVTHLAD 75 (275)
T ss_pred CCcCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh------cCCeEEEEeCCCCCHHHHHHHHH
Confidence 358899999999999999999999999999999999999888887777754 25578899999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCCcc
Q psy13409 92 EILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~~~ 168 (330)
++.+.++++|++|||||.... ..+.+.++|+..+++|+.+++.+++.++|.|.+++ +|+||++||.++..+.
T Consensus 76 ~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~~~~~~~----- 150 (275)
T PRK05876 76 EAFRLLGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLVPN----- 150 (275)
T ss_pred HHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCChhhccCC-----
Confidence 999999999999999998643 36788899999999999999999999999998775 6899999999887664
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
++...|++||+++.+|+++|+.|++
T Consensus 151 ---------~~~~~Y~asK~a~~~~~~~l~~e~~---------------------------------------------- 175 (275)
T PRK05876 151 ---------AGLGAYGVAKYGVVGLAETLAREVT---------------------------------------------- 175 (275)
T ss_pred ---------CCCchHHHHHHHHHHHHHHHHHHhh----------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCchhh----HH--HHHH-hhhhhccChHHHHHHHHHhhcccc
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGT----AW--LYQR-VGGLFIKSPLQGAQTTLYCALDKK 314 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~----~~--~~~~-~~~~~~~~~~e~a~~~~~l~~~~~ 314 (330)
. .||+|++|+||+|+|++........... .. .... .....+.+|+|+|+.++..+..++
T Consensus 176 ----~---~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~ai~~~~ 241 (275)
T PRK05876 176 ----A---DGIGVSVLCPMVVETNLVANSERIRGAACAQSSTTGSPGPLPLQDDNLGVDDIAQLTADAILANR 241 (275)
T ss_pred ----h---cCcEEEEEEeCccccccccchhhhcCccccccccccccccccccccCCCHHHHHHHHHHHHHcCC
Confidence 5 7999999999999999865432111000 00 0000 011225799999999999886554
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=258.47 Aligned_cols=240 Identities=25% Similarity=0.299 Sum_probs=195.0
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
+++|+||++|||||++|||++++++|+++|++|++++|+.+.. +..+.+... +.++.++.+|+++++++++++
T Consensus 2 ~~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~ 74 (258)
T PRK08628 2 DLNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDD-EFAEELRAL------QPRAEFVQVDLTDDAQCRDAV 74 (258)
T ss_pred CCCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhH-HHHHHHHhc------CCceEEEEccCCCHHHHHHHH
Confidence 4679999999999999999999999999999999999998766 555555442 557899999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCC-CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 91 QEILDNESAIHLLINNAGVMMCP-RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~-~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
+++.+.++.+|++|||||..... .+.+.++++..+++|+.+++.+.+.+++.+.+. .++||++||..+..+.
T Consensus 75 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~iv~~ss~~~~~~~------ 147 (258)
T PRK08628 75 EQTVAKFGRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKAS-RGAIVNISSKTALTGQ------ 147 (258)
T ss_pred HHHHHhcCCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhcc-CcEEEEECCHHhccCC------
Confidence 99999999999999999975432 233338899999999999999999999988654 4899999998887664
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
+.+..|++||++++.++++++.|+.
T Consensus 148 --------~~~~~Y~~sK~a~~~~~~~l~~e~~----------------------------------------------- 172 (258)
T PRK08628 148 --------GGTSGYAAAKGAQLALTREWAVALA----------------------------------------------- 172 (258)
T ss_pred --------CCCchhHHHHHHHHHHHHHHHHHHh-----------------------------------------------
Confidence 5778999999999999999999998
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCc-hhhHHHH---HHhhh-hhccChHHHHHHHHHhhccccccccCceecc
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSII-PGTAWLY---QRVGG-LFIKSPLQGAQTTLYCALDKKCERETGLYYA 324 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~-~~~~~~~---~~~~~-~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~ 324 (330)
. +||+||+|+||.|+|++...+.... ....... ..... .++.+|+|+|+.++|++++ .+.+++|++|-
T Consensus 173 ---~---~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~-~~~~~~g~~~~ 245 (258)
T PRK08628 173 ---K---DGVRVNAVIPAEVMTPLYENWIATFDDPEAKLAAITAKIPLGHRMTTAEEIADTAVFLLSE-RSSHTTGQWLF 245 (258)
T ss_pred ---h---cCeEEEEEecCccCCHHHHHHhhhccCHHHHHHHHHhcCCccccCCCHHHHHHHHHHHhCh-hhccccCceEE
Confidence 5 7999999999999999865432211 1111111 11111 1378999999999999966 45688998876
Q ss_pred cC
Q psy13409 325 KA 326 (330)
Q Consensus 325 ~~ 326 (330)
..
T Consensus 246 ~~ 247 (258)
T PRK08628 246 VD 247 (258)
T ss_pred ec
Confidence 53
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=265.22 Aligned_cols=237 Identities=24% Similarity=0.300 Sum_probs=194.4
Q ss_pred cCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh-hHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHH
Q psy13409 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL-EKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVR 87 (330)
Q Consensus 9 ~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~-~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~ 87 (330)
.+..+++||+++||||++|||++++++|+++|++|++++++. +.+++..+++.. .+.++.++.+|++++++++
T Consensus 5 ~~~~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~------~g~~~~~~~~Dv~d~~~~~ 78 (306)
T PRK07792 5 TNTTDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRA------AGAKAVAVAGDISQRATAD 78 (306)
T ss_pred cCCcCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHh------cCCeEEEEeCCCCCHHHHH
Confidence 345679999999999999999999999999999999998853 456666666654 2568899999999999999
Q ss_pred HHHHHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-------CCeEEEEcCCC
Q psy13409 88 KCAQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-------PARIINLSSLA 158 (330)
Q Consensus 88 ~l~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-------~g~IV~iSS~~ 158 (330)
++++.+.+ ++++|++|||||..... .+.+.++|+..+++|+.+++.+++.++++|.++. .|+||++||.+
T Consensus 79 ~~~~~~~~-~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~ 157 (306)
T PRK07792 79 ELVATAVG-LGGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEA 157 (306)
T ss_pred HHHHHHHH-hCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCcc
Confidence 99999988 99999999999987543 5678899999999999999999999999987541 37999999998
Q ss_pred cccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCC
Q psy13409 159 HTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQT 238 (330)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (330)
+..+. +....|+++|+|+++|+++++.|+.
T Consensus 158 ~~~~~--------------~~~~~Y~asKaal~~l~~~la~e~~------------------------------------ 187 (306)
T PRK07792 158 GLVGP--------------VGQANYGAAKAGITALTLSAARALG------------------------------------ 187 (306)
T ss_pred cccCC--------------CCCchHHHHHHHHHHHHHHHHHHhh------------------------------------
Confidence 87664 5677899999999999999999998
Q ss_pred CCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhcccccccc
Q psy13409 239 PTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERE 318 (330)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~ 318 (330)
+ .||+||+|+|| +.|++........... . .......+|+|+|+.+.||+++ .++++
T Consensus 188 --------------~---~gI~vn~i~Pg-~~t~~~~~~~~~~~~~--~---~~~~~~~~pe~va~~v~~L~s~-~~~~~ 243 (306)
T PRK07792 188 --------------R---YGVRANAICPR-ARTAMTADVFGDAPDV--E---AGGIDPLSPEHVVPLVQFLASP-AAAEV 243 (306)
T ss_pred --------------h---cCeEEEEECCC-CCCchhhhhccccchh--h---hhccCCCCHHHHHHHHHHHcCc-cccCC
Confidence 5 79999999999 4888765432211100 0 1111245899999999999865 56789
Q ss_pred CceecccC
Q psy13409 319 TGLYYAKA 326 (330)
Q Consensus 319 ~G~~~~~~ 326 (330)
||++|...
T Consensus 244 tG~~~~v~ 251 (306)
T PRK07792 244 NGQVFIVY 251 (306)
T ss_pred CCCEEEEc
Confidence 99987654
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=256.40 Aligned_cols=237 Identities=20% Similarity=0.259 Sum_probs=195.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEE-ecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMA-CRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~-~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
|++|+++||||++|||++++++|+++|++|++. .++....++..+++.. .+.++..+.+|+++.+++++++++
T Consensus 1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~D~~~~~~~~~~~~~ 74 (246)
T PRK12938 1 MSQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKA------LGFDFIASEGNVGDWDSTKAAFDK 74 (246)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHh------cCCcEEEEEcCCCCHHHHHHHHHH
Confidence 578999999999999999999999999998885 4455555555555543 256788899999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 93 ILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
+.+.++++|++|||||.... ..+.+.+++++++++|+.+++.+++.+++.|.+++.++||++||..+..+.
T Consensus 75 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~------- 147 (246)
T PRK12938 75 VKAEVGEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQKGQ------- 147 (246)
T ss_pred HHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEechhccCCC-------
Confidence 99999999999999998643 356788999999999999999999999999988777899999998877664
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
++...|+++|++++.++++++.++.
T Consensus 148 -------~~~~~y~~sK~a~~~~~~~l~~~~~------------------------------------------------ 172 (246)
T PRK12938 148 -------FGQTNYSTAKAGIHGFTMSLAQEVA------------------------------------------------ 172 (246)
T ss_pred -------CCChhHHHHHHHHHHHHHHHHHHhh------------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred CCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 251 PPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 251 ~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
. .||++|+|+||+++|++.+.... ...+.........++.+|+|+++.++||+++ ...+++|+.+...
T Consensus 173 --~---~gi~v~~i~pg~~~t~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~-~~~~~~g~~~~~~ 240 (246)
T PRK12938 173 --T---KGVTVNTVSPGYIGTDMVKAIRP--DVLEKIVATIPVRRLGSPDEIGSIVAWLASE-ESGFSTGADFSLN 240 (246)
T ss_pred --h---hCeEEEEEEecccCCchhhhcCh--HHHHHHHhcCCccCCcCHHHHHHHHHHHcCc-ccCCccCcEEEEC
Confidence 5 79999999999999998765421 1112222222223378999999999999966 4568999988654
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=269.48 Aligned_cols=228 Identities=26% Similarity=0.292 Sum_probs=193.7
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
+..+++|+++||||++|||++++++|+++|++|++++|+.+.+++..+++.+ .+.++.++.+|++|++++++++
T Consensus 3 ~~~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~------~g~~~~~v~~Dv~d~~~v~~~~ 76 (334)
T PRK07109 3 LKPIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRA------AGGEALAVVADVADAEAVQAAA 76 (334)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH------cCCcEEEEEecCCCHHHHHHHH
Confidence 4568899999999999999999999999999999999999988888877765 2567899999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 91 QEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
+.+.+.++++|++|||||.... ..+.+.+++++.+++|+.+++.+++.+++.|.+++.|+||++||..+..+.
T Consensus 77 ~~~~~~~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~g~iV~isS~~~~~~~----- 151 (334)
T PRK07109 77 DRAEEELGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRGAIIQVGSALAYRSI----- 151 (334)
T ss_pred HHHHHHCCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEeCChhhccCC-----
Confidence 9999999999999999997543 367889999999999999999999999999998878999999999887664
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
+....|+++|+++.+|+++++.|+...
T Consensus 152 ---------~~~~~Y~asK~a~~~~~~~l~~el~~~-------------------------------------------- 178 (334)
T PRK07109 152 ---------PLQSAYCAAKHAIRGFTDSLRCELLHD-------------------------------------------- 178 (334)
T ss_pred ---------CcchHHHHHHHHHHHHHHHHHHHHhhc--------------------------------------------
Confidence 667899999999999999999998721
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhcccc
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKK 314 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~ 314 (330)
. .+|+|++|+||+|+|++......... ....+.+ ++.+|+|+|+.+++++.++.
T Consensus 179 ----~---~~I~v~~v~Pg~v~T~~~~~~~~~~~---~~~~~~~--~~~~pe~vA~~i~~~~~~~~ 232 (334)
T PRK07109 179 ----G---SPVSVTMVQPPAVNTPQFDWARSRLP---VEPQPVP--PIYQPEVVADAILYAAEHPR 232 (334)
T ss_pred ----C---CCeEEEEEeCCCccCchhhhhhhhcc---ccccCCC--CCCCHHHHHHHHHHHHhCCC
Confidence 2 58999999999999997654321110 0011222 37899999999999997753
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=253.33 Aligned_cols=231 Identities=22% Similarity=0.208 Sum_probs=193.1
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCC--HHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSS--LKSVRKC 89 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~--~~si~~l 89 (330)
..|++|+++||||++|||++++++|+++|++|++++|+.+.+++..+++.+. ....+.++.+|+++ .++++++
T Consensus 2 ~~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~~D~~~~~~~~~~~~ 76 (239)
T PRK08703 2 ATLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEA-----GHPEPFAIRFDLMSAEEKEFEQF 76 (239)
T ss_pred CCCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHc-----CCCCcceEEeeecccchHHHHHH
Confidence 4578999999999999999999999999999999999998888777776543 23456788999986 5688999
Q ss_pred HHHHHhcC-CCeeEEEEcCCCCC---CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCC
Q psy13409 90 AQEILDNE-SAIHLLINNAGVMM---CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGS 165 (330)
Q Consensus 90 ~~~i~~~~-g~iDvlInnAG~~~---~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~ 165 (330)
++++.+.+ +.+|++|||||... +..+.+.+++++.+++|+.+++.+++.+++.|.+.+.+++|++||..+..+.
T Consensus 77 ~~~i~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~~-- 154 (239)
T PRK08703 77 AATIAEATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFVGESHGETPK-- 154 (239)
T ss_pred HHHHHHHhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCEEEEEeccccccCC--
Confidence 99888877 88999999999753 3467788999999999999999999999999987777999999998776553
Q ss_pred CcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccc
Q psy13409 166 MHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCK 245 (330)
Q Consensus 166 ~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (330)
+.+.+|++||+|++.++++++.|+..
T Consensus 155 ------------~~~~~Y~~sKaa~~~~~~~la~e~~~------------------------------------------ 180 (239)
T PRK08703 155 ------------AYWGGFGASKAALNYLCKVAADEWER------------------------------------------ 180 (239)
T ss_pred ------------CCccchHHhHHHHHHHHHHHHHHhcc------------------------------------------
Confidence 56788999999999999999999972
Q ss_pred ccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecc
Q psy13409 246 NVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYA 324 (330)
Q Consensus 246 ~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~ 324 (330)
. .+|+|++|+||+|+|++........... . ..+++|+++.++|++++ .+.++||+.+.
T Consensus 181 -------~---~~i~v~~v~pG~v~t~~~~~~~~~~~~~--------~--~~~~~~~~~~~~~~~~~-~~~~~~g~~~~ 238 (239)
T PRK08703 181 -------F---GNLRANVLVPGPINSPQRIKSHPGEAKS--------E--RKSYGDVLPAFVWWASA-ESKGRSGEIVY 238 (239)
T ss_pred -------C---CCeEEEEEecCcccCccccccCCCCCcc--------c--cCCHHHHHHHHHHHhCc-cccCcCCeEee
Confidence 1 3799999999999999865432211111 1 36999999999999964 67899999874
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=256.09 Aligned_cols=235 Identities=21% Similarity=0.230 Sum_probs=195.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
.+++|+++||||++|||++++++|+++|++|++++|+.+.+++..+++.. .+.++.++.+|+++++++++++++
T Consensus 2 ~l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~------~~~~~~~~~~D~~~~~~~~~~~~~ 75 (258)
T PRK07890 2 LLKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDD------LGRRALAVPTDITDEDQCANLVAL 75 (258)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH------hCCceEEEecCCCCHHHHHHHHHH
Confidence 36889999999999999999999999999999999999887777766654 256789999999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCC---CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 93 ILDNESAIHLLINNAGVMMC---PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~---~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
+.+.++++|++|||||...+ ..+.+.+++++.+++|+.+++.+++.+.+.|.+. +++||++||..+..+.
T Consensus 76 ~~~~~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~ii~~sS~~~~~~~------ 148 (258)
T PRK07890 76 ALERFGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAES-GGSIVMINSMVLRHSQ------ 148 (258)
T ss_pred HHHHcCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhC-CCEEEEEechhhccCC------
Confidence 99999999999999997543 3567889999999999999999999999998765 4799999998876553
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
+++..|+++|++++.+++++++++.
T Consensus 149 --------~~~~~Y~~sK~a~~~l~~~~a~~~~----------------------------------------------- 173 (258)
T PRK07890 149 --------PKYGAYKMAKGALLAASQSLATELG----------------------------------------------- 173 (258)
T ss_pred --------CCcchhHHHHHHHHHHHHHHHHHHh-----------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCC---------chhhHHHH--HHhhhhhccChHHHHHHHHHhhcccccccc
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSI---------IPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERE 318 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~---------~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~ 318 (330)
+ ++|++|+|+||+|.|++....... ........ .++++ +.+|+|+|++++|+++. .+.++
T Consensus 174 ---~---~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~dva~a~~~l~~~-~~~~~ 244 (258)
T PRK07890 174 ---P---QGIRVNSVAPGYIWGDPLKGYFRHQAGKYGVTVEQIYAETAANSDLKR--LPTDDEVASAVLFLASD-LARAI 244 (258)
T ss_pred ---h---cCcEEEEEeCCccCcHHHHHHhhhcccccCCCHHHHHHHHhhcCCccc--cCCHHHHHHHHHHHcCH-hhhCc
Confidence 5 799999999999999975432110 11111111 22333 77999999999999865 45689
Q ss_pred Cceecc
Q psy13409 319 TGLYYA 324 (330)
Q Consensus 319 ~G~~~~ 324 (330)
||+.+.
T Consensus 245 ~G~~i~ 250 (258)
T PRK07890 245 TGQTLD 250 (258)
T ss_pred cCcEEE
Confidence 999874
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=255.65 Aligned_cols=240 Identities=20% Similarity=0.214 Sum_probs=195.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
+|++|||||+++||.++++.|+++|++|++++|+...+++..+.+.... ...++.++.+|+++++++.++++++.+
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~i~~~~~~~~~ 77 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEY----GEGMAYGFGADATSEQSVLALSRGVDE 77 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhc----CCceeEEEEccCCCHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999888877777665432 125789999999999999999999999
Q ss_pred cCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCCcccccc
Q psy13409 96 NESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSMHFEDIN 172 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~~~~~~~ 172 (330)
.++++|++|||||..... .+.+.++|+..+++|+.+++++++++++.|.+++ .++||++||..+..+.
T Consensus 78 ~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~~~~~~--------- 148 (259)
T PRK12384 78 IFGRVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVGS--------- 148 (259)
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcccccCC---------
Confidence 999999999999976543 5778899999999999999999999999998876 6899999998876664
Q ss_pred cccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCC
Q psy13409 173 LEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPP 252 (330)
Q Consensus 173 ~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (330)
+....|++||+|++++++++++|+.
T Consensus 149 -----~~~~~Y~~sKaa~~~l~~~la~e~~-------------------------------------------------- 173 (259)
T PRK12384 149 -----KHNSGYSAAKFGGVGLTQSLALDLA-------------------------------------------------- 173 (259)
T ss_pred -----CCCchhHHHHHHHHHHHHHHHHHHH--------------------------------------------------
Confidence 5667899999999999999999998
Q ss_pred CCCCCceeEEEeeCccc-ccCcccccCCC---------chhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCcee
Q psy13409 253 GANITNVNTYAVHPGVV-DTELSRHFDSI---------IPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLY 322 (330)
Q Consensus 253 ~~~~~~i~v~~v~pG~v-~t~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~ 322 (330)
+ .||+||+|+||.+ .|++....... ....+.........++.+|+|++++++||++. .+.+++|+.
T Consensus 174 ~---~gi~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~l~~~-~~~~~~G~~ 249 (259)
T PRK12384 174 E---YGITVHSLMLGNLLKSPMFQSLLPQYAKKLGIKPDEVEQYYIDKVPLKRGCDYQDVLNMLLFYASP-KASYCTGQS 249 (259)
T ss_pred H---cCcEEEEEecCCcccchhhhhhhHHHHHhcCCChHHHHHHHHHhCcccCCCCHHHHHHHHHHHcCc-ccccccCce
Confidence 5 7999999999974 77765432111 01111111112223378999999999999865 456899998
Q ss_pred cccCC
Q psy13409 323 YAKAD 327 (330)
Q Consensus 323 ~~~~~ 327 (330)
|.-..
T Consensus 250 ~~v~~ 254 (259)
T PRK12384 250 INVTG 254 (259)
T ss_pred EEEcC
Confidence 76543
|
|
| >KOG4169|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=253.89 Aligned_cols=232 Identities=25% Similarity=0.308 Sum_probs=193.6
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
++++||.+++|||.||||++++++|+++|..+.++..+.+..+. ..++++. ++...+.+++||+++..+++++++
T Consensus 1 m~~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En~~a-~akL~ai----~p~~~v~F~~~DVt~~~~~~~~f~ 75 (261)
T KOG4169|consen 1 MDLTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEENPEA-IAKLQAI----NPSVSVIFIKCDVTNRGDLEAAFD 75 (261)
T ss_pred CcccCceEEEecCCchhhHHHHHHHHHcCchheeehhhhhCHHH-HHHHhcc----CCCceEEEEEeccccHHHHHHHHH
Confidence 36889999999999999999999999999988888777766443 3444443 367899999999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC---CCeEEEEcCCCcccCCCCCcc
Q psy13409 92 EILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA---PARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~---~g~IV~iSS~~~~~~~~~~~~ 168 (330)
++..++|.+|++||+||+. +..+|+.++++|+.|.++-+..++|+|.++. +|-|||+||..|..+.
T Consensus 76 ki~~~fg~iDIlINgAGi~------~dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~GL~P~----- 144 (261)
T KOG4169|consen 76 KILATFGTIDILINGAGIL------DDKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVAGLDPM----- 144 (261)
T ss_pred HHHHHhCceEEEEcccccc------cchhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEeccccccCcc-----
Confidence 9999999999999999998 5678999999999999999999999998875 5789999999998875
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
+..+.|++||+++.+|+||||...--.
T Consensus 145 ---------p~~pVY~AsKaGVvgFTRSla~~ayy~-------------------------------------------- 171 (261)
T KOG4169|consen 145 ---------PVFPVYAASKAGVVGFTRSLADLAYYQ-------------------------------------------- 171 (261)
T ss_pred ---------ccchhhhhcccceeeeehhhhhhhhHh--------------------------------------------
Confidence 788899999999999999998764200
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCC---CchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceec
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDS---IIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYY 323 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~ 323 (330)
+ .||++|+||||++.|++.+.+.. ...........+.+....+|.++|+.++.+++.+ .+|+.+
T Consensus 172 ----~---sGV~~~avCPG~t~t~l~~~~~~~~~~~e~~~~~~~~l~~~~~q~~~~~a~~~v~aiE~~----~NGaiw 238 (261)
T KOG4169|consen 172 ----R---SGVRFNAVCPGFTRTDLAENIDASGGYLEYSDSIKEALERAPKQSPACCAINIVNAIEYP----KNGAIW 238 (261)
T ss_pred ----h---cCEEEEEECCCcchHHHHHHHHhcCCcccccHHHHHHHHHcccCCHHHHHHHHHHHHhhc----cCCcEE
Confidence 4 79999999999999998877633 2222233334445555689999999999998764 377665
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=280.79 Aligned_cols=236 Identities=25% Similarity=0.303 Sum_probs=196.9
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
+.+||+++||||++|||+++++.|+++|++|++++|+.+++++..+++ +.++.++.+|++++++++++++.
T Consensus 2 ~~~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~D~~~~~~~~~~~~~ 72 (520)
T PRK06484 2 KAQSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSL---------GPDHHALAMDVSDEAQIREGFEQ 72 (520)
T ss_pred CCCCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---------CCceeEEEeccCCHHHHHHHHHH
Confidence 468999999999999999999999999999999999988777655443 34678899999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCC----CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCC-eEEEEcCCCcccCCCCCc
Q psy13409 93 ILDNESAIHLLINNAGVMM----CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPA-RIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~----~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g-~IV~iSS~~~~~~~~~~~ 167 (330)
+.+.++++|+||||||... +..+.+.++|++++++|+.+++.+++.++|.|.+++.| +||++||..+..+.
T Consensus 73 ~~~~~g~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~~~~~~---- 148 (520)
T PRK06484 73 LHREFGRIDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGAGLVAL---- 148 (520)
T ss_pred HHHHhCCCCEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcccCCCC----
Confidence 9999999999999999742 23577889999999999999999999999999876655 99999999887774
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
+....|+++|+|+.+|+++++.|+.
T Consensus 149 ----------~~~~~Y~asKaal~~l~~~la~e~~--------------------------------------------- 173 (520)
T PRK06484 149 ----------PKRTAYSASKAAVISLTRSLACEWA--------------------------------------------- 173 (520)
T ss_pred ----------CCCchHHHHHHHHHHHHHHHHHHhh---------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCCCchh-hHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceeccc
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPG-TAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAK 325 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~ 325 (330)
+ .+|+|++|+||+|+|++.......... .......+...++.+|+|+|+.++||+++ ..++++|+.+..
T Consensus 174 -----~---~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~v~~l~~~-~~~~~~G~~~~~ 243 (520)
T PRK06484 174 -----A---KGIRVNAVLPGYVRTQMVAELERAGKLDPSAVRSRIPLGRLGRPEEIAEAVFFLASD-QASYITGSTLVV 243 (520)
T ss_pred -----h---hCeEEEEEccCCcCchhhhhhcccchhhhHHHHhcCCCCCCcCHHHHHHHHHHHhCc-cccCccCceEEe
Confidence 5 799999999999999987654322111 11111222222367999999999999966 457899988753
|
|
| >PLN00015 protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-33 Score=262.38 Aligned_cols=245 Identities=30% Similarity=0.438 Sum_probs=191.4
Q ss_pred EEEcCCCchHHHHHHHHHHCC-CEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhcCC
Q psy13409 20 IVTGSNTGIGKCTANELAKRG-ARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNES 98 (330)
Q Consensus 20 LITGas~gIG~aia~~L~~~G-~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~~g 98 (330)
|||||++|||++++++|+++| ++|++++|+.+.+++..+++.. .+.++.++.+|+++.++++++++.+.+.++
T Consensus 1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~------~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~ 74 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGM------PKDSYTVMHLDLASLDSVRQFVDNFRRSGR 74 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhcC------CCCeEEEEEecCCCHHHHHHHHHHHHhcCC
Confidence 699999999999999999999 9999999998887777666532 245788899999999999999999988889
Q ss_pred CeeEEEEcCCCCCC---CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC--CCeEEEEcCCCcccCCCC------Cc
Q psy13409 99 AIHLLINNAGVMMC---PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA--PARIINLSSLAHTWGDGS------MH 167 (330)
Q Consensus 99 ~iDvlInnAG~~~~---~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~--~g~IV~iSS~~~~~~~~~------~~ 167 (330)
++|+||||||+..+ ..+.+.++|++++++|+.+++.+++.++|.|.+++ .|+||++||..+..+... ..
T Consensus 75 ~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~ 154 (308)
T PLN00015 75 PLDVLVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 154 (308)
T ss_pred CCCEEEECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccCCCccc
Confidence 99999999998643 24678899999999999999999999999998775 589999999877532100 00
Q ss_pred ccccc---------------cccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhh
Q psy13409 168 FEDIN---------------LEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLC 232 (330)
Q Consensus 168 ~~~~~---------------~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (330)
...++ ....+.++.+|++||+|+..+++.++.++..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~SK~a~~~~~~~la~~~~~----------------------------- 205 (308)
T PLN00015 155 LGDLRGLAGGLNGLNSSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHE----------------------------- 205 (308)
T ss_pred hhhhhhhhcccCCccchhhccccCCcHHHHHhHhHHHHHHHHHHHHHhhcc-----------------------------
Confidence 00000 0112356788999999999999999999862
Q ss_pred cccCCCCCcccccccccCCCCCCCCceeEEEeeCccc-ccCcccccCCCchhhHHHH---HHhhhhhccChHHHHHHHHH
Q psy13409 233 DANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVV-DTELSRHFDSIIPGTAWLY---QRVGGLFIKSPLQGAQTTLY 308 (330)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v-~t~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~e~a~~~~~ 308 (330)
. .||+||+|+||+| +|++.+..... ..+.. ......++.+|+|+|+.+++
T Consensus 206 --------------------~---~gi~v~~v~PG~v~~t~~~~~~~~~---~~~~~~~~~~~~~~~~~~pe~~a~~~~~ 259 (308)
T PLN00015 206 --------------------E---TGITFASLYPGCIATTGLFREHIPL---FRLLFPPFQKYITKGYVSEEEAGKRLAQ 259 (308)
T ss_pred --------------------c---CCeEEEEecCCcccCccccccccHH---HHHHHHHHHHHHhcccccHHHhhhhhhh
Confidence 2 5899999999999 79987653221 11111 11111226899999999999
Q ss_pred hhccccccccCceecccC
Q psy13409 309 CALDKKCERETGLYYAKA 326 (330)
Q Consensus 309 l~~~~~~~~~~G~~~~~~ 326 (330)
++++.. .+.+|.|+.+.
T Consensus 260 l~~~~~-~~~~G~~~~~~ 276 (308)
T PLN00015 260 VVSDPS-LTKSGVYWSWN 276 (308)
T ss_pred hccccc-cCCCccccccC
Confidence 997754 47899999864
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=254.98 Aligned_cols=243 Identities=21% Similarity=0.219 Sum_probs=199.5
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
+++++|++|||||+|+||+++++.|+++|++|++++|+.+.+++..+.+.... ...++.++.+|++++++++++++
T Consensus 3 ~~~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~~Dl~~~~~~~~~~~ 78 (276)
T PRK05875 3 LSFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALK----GAGAVRYEPADVTDEDQVARAVD 78 (276)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcc----CCCceEEEEcCCCCHHHHHHHHH
Confidence 35789999999999999999999999999999999999887777666654421 13578899999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCC---CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 92 EILDNESAIHLLINNAGVMMC---PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~---~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
++.+.++++|++|||+|.... ..+.+.++++.++++|+.+++.+++.+++.|.+.+.++||++||..+..+.
T Consensus 79 ~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~~~~----- 153 (276)
T PRK05875 79 AATAWHGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAASNTH----- 153 (276)
T ss_pred HHHHHcCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcCCC-----
Confidence 999999999999999997532 356788899999999999999999999999987777899999998876553
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
+..++|+++|++++.+++++++++.
T Consensus 154 ---------~~~~~Y~~sK~a~~~~~~~~~~~~~---------------------------------------------- 178 (276)
T PRK05875 154 ---------RWFGAYGVTKSAVDHLMKLAADELG---------------------------------------------- 178 (276)
T ss_pred ---------CCCcchHHHHHHHHHHHHHHHHHhc----------------------------------------------
Confidence 5678999999999999999999998
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
. .+|++++|+||+++|++.....................++.+|+|+|++++||++.+ ..+++|+++.-.
T Consensus 179 ----~---~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~-~~~~~g~~~~~~ 248 (276)
T PRK05875 179 ----P---SWVRVNSIRPGLIRTDLVAPITESPELSADYRACTPLPRVGEVEDVANLAMFLLSDA-ASWITGQVINVD 248 (276)
T ss_pred ----c---cCeEEEEEecCccCCccccccccCHHHHHHHHcCCCCCCCcCHHHHHHHHHHHcCch-hcCcCCCEEEEC
Confidence 5 799999999999999987654332221111111111233789999999999999664 468899887654
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=251.33 Aligned_cols=236 Identities=23% Similarity=0.319 Sum_probs=195.3
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
+++++++++||||+|+||+++++.|+++|+.|++.+|+.+++++..+.+ +.++.++.+|+++.++++++++
T Consensus 2 ~~~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~---------~~~~~~~~~D~~~~~~~~~~~~ 72 (245)
T PRK12936 2 FDLSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAEL---------GERVKIFPANLSDRDEVKALGQ 72 (245)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh---------CCceEEEEccCCCHHHHHHHHH
Confidence 3678999999999999999999999999999999999987766554332 3467889999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 92 EILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
++.+.++++|++|||||...+. .+.+.++++..+++|+.+++.+++.+.+.+.+++.++||++||..+..+.
T Consensus 73 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~------ 146 (245)
T PRK12936 73 KAEADLEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVVGVTGN------ 146 (245)
T ss_pred HHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHHhCcCC------
Confidence 9999999999999999986532 56677899999999999999999999998877777999999998887774
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
+....|+++|+++..+++.+++++.
T Consensus 147 --------~~~~~Y~~sk~a~~~~~~~la~~~~----------------------------------------------- 171 (245)
T PRK12936 147 --------PGQANYCASKAGMIGFSKSLAQEIA----------------------------------------------- 171 (245)
T ss_pred --------CCCcchHHHHHHHHHHHHHHHHHhh-----------------------------------------------
Confidence 5677899999999999999999987
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
. .||++++|+||+++|++....... ..+.........++.+|+|+|+.++|+++. ...+++|+++.-.
T Consensus 172 ---~---~~i~v~~i~pg~~~t~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ia~~~~~l~~~-~~~~~~G~~~~~~ 239 (245)
T PRK12936 172 ---T---RNVTVNCVAPGFIESAMTGKLNDK--QKEAIMGAIPMKRMGTGAEVASAVAYLASS-EAAYVTGQTIHVN 239 (245)
T ss_pred ---H---hCeEEEEEEECcCcCchhcccChH--HHHHHhcCCCCCCCcCHHHHHHHHHHHcCc-cccCcCCCEEEEC
Confidence 5 799999999999999987654321 111111112223378999999999999865 4568999988643
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=253.30 Aligned_cols=241 Identities=27% Similarity=0.307 Sum_probs=197.7
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
++++|++|||||+++||.+++++|+++|++|++++|+.++++...+.+.. .+.++.++.||++|++++++++++
T Consensus 9 ~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~------~~~~~~~~~~Dl~d~~~i~~~~~~ 82 (259)
T PRK08213 9 DLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEA------LGIDALWIAADVADEADIERLAEE 82 (259)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh------cCCeEEEEEccCCCHHHHHHHHHH
Confidence 57899999999999999999999999999999999998887777766654 256788999999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHH-HhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 93 ILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPR-IIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~-l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
+.+.++++|++|||||.... ..+.+.+.|++++++|+.+++.+++++.+. |.+++.+++|++||..+..+.+.
T Consensus 83 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~~~~~~~~~---- 158 (259)
T PRK08213 83 TLERFGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASVAGLGGNPP---- 158 (259)
T ss_pred HHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECChhhccCCCc----
Confidence 99988999999999997532 356788899999999999999999999998 76666689999999877665310
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
...+...|+++|++++.+++++++++.
T Consensus 159 ------~~~~~~~Y~~sKa~~~~~~~~~a~~~~----------------------------------------------- 185 (259)
T PRK08213 159 ------EVMDTIAYNTSKGAVINFTRALAAEWG----------------------------------------------- 185 (259)
T ss_pred ------cccCcchHHHHHHHHHHHHHHHHHHhc-----------------------------------------------
Confidence 013457899999999999999999998
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceeccc
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAK 325 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~ 325 (330)
. .||++++|+||+++|++....... ..+.+.......++.+|+|+|+.+++|++. .+.+++|+.+.-
T Consensus 186 ---~---~gi~v~~v~Pg~~~t~~~~~~~~~--~~~~~~~~~~~~~~~~~~~va~~~~~l~~~-~~~~~~G~~~~~ 252 (259)
T PRK08213 186 ---P---HGIRVNAIAPGFFPTKMTRGTLER--LGEDLLAHTPLGRLGDDEDLKGAALLLASD-ASKHITGQILAV 252 (259)
T ss_pred ---c---cCEEEEEEecCcCCCcchhhhhHH--HHHHHHhcCCCCCCcCHHHHHHHHHHHhCc-cccCccCCEEEE
Confidence 5 799999999999999986544321 111222222223377999999999999865 567999998753
|
|
| >KOG1207|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-35 Score=246.63 Aligned_cols=233 Identities=25% Similarity=0.243 Sum_probs=201.8
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
.+|.|+++++||+.-|||+++++.|++.|++|+++.|++..+..+.++ ...-+..+..|+++++.+.+++.
T Consensus 3 t~laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~L~sLV~e---------~p~~I~Pi~~Dls~wea~~~~l~ 73 (245)
T KOG1207|consen 3 TSLAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSLVKE---------TPSLIIPIVGDLSAWEALFKLLV 73 (245)
T ss_pred ccccceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHHHHHHHhh---------CCcceeeeEecccHHHHHHHhhc
Confidence 468999999999999999999999999999999999999988777655 35668999999999776655543
Q ss_pred HHHhcCCCeeEEEEcCCCCC--CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCCcc
Q psy13409 92 EILDNESAIHLLINNAGVMM--CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~--~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~~~ 168 (330)
..+.+|.++||||+.. +..+.+.++|+..|++|+.+++++.|.+.+-+..+. +|.||++||.++.++.
T Consensus 74 ----~v~pidgLVNNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNvSSqas~R~~----- 144 (245)
T KOG1207|consen 74 ----PVFPIDGLVNNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNVSSQASIRPL----- 144 (245)
T ss_pred ----ccCchhhhhccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEecchhccccc-----
Confidence 3478999999999865 457899999999999999999999999776665554 6899999999998884
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
.+...||++|+|++++++.||.|++
T Consensus 145 ---------~nHtvYcatKaALDmlTk~lAlELG---------------------------------------------- 169 (245)
T KOG1207|consen 145 ---------DNHTVYCATKAALDMLTKCLALELG---------------------------------------------- 169 (245)
T ss_pred ---------CCceEEeecHHHHHHHHHHHHHhhC----------------------------------------------
Confidence 7788999999999999999999999
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceeccc
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAK 325 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~ 325 (330)
+ .+||||+|.|-.|-|+|.++..+++.....+..+++..++..++|+.++++||+++ .+++.||+.+--
T Consensus 170 ----p---~kIRVNsVNPTVVmT~MG~dnWSDP~K~k~mL~riPl~rFaEV~eVVnA~lfLLSd-~ssmttGstlpv 238 (245)
T KOG1207|consen 170 ----P---QKIRVNSVNPTVVMTDMGRDNWSDPDKKKKMLDRIPLKRFAEVDEVVNAVLFLLSD-NSSMTTGSTLPV 238 (245)
T ss_pred ----c---ceeEeeccCCeEEEecccccccCCchhccchhhhCchhhhhHHHHHHhhheeeeec-CcCcccCceeee
Confidence 6 89999999999999999999888877666676555444599999999999999977 578999998753
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=260.56 Aligned_cols=254 Identities=31% Similarity=0.428 Sum_probs=194.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCC-CEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRG-ARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G-~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
+++|+++||||++|||+++++.|+++| ++|++++|+.++++++.+++.. .+.++.++.+|+++.+++++++++
T Consensus 1 ~~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~------~~~~~~~~~~Dl~~~~~v~~~~~~ 74 (314)
T TIGR01289 1 QQKPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGM------PKDSYTIMHLDLGSLDSVRQFVQQ 74 (314)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcC------CCCeEEEEEcCCCCHHHHHHHHHH
Confidence 358999999999999999999999999 9999999999887777666532 245788899999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCCC---CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC--CCeEEEEcCCCcccCCCC--
Q psy13409 93 ILDNESAIHLLINNAGVMMCP---RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA--PARIINLSSLAHTWGDGS-- 165 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~---~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~--~g~IV~iSS~~~~~~~~~-- 165 (330)
+.+.++++|++|||||+..+. .+.+.++|+.++++|+.+++.+++.++|.|.+++ .|+||++||.++..+...
T Consensus 75 ~~~~~~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~~~~~~~~~~~ 154 (314)
T TIGR01289 75 FRESGRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAGN 154 (314)
T ss_pred HHHhCCCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecCccccccCCCc
Confidence 988889999999999986432 3567899999999999999999999999998764 489999999987532100
Q ss_pred ----Ccccc-------------cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhh
Q psy13409 166 ----MHFED-------------INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLT 228 (330)
Q Consensus 166 ----~~~~~-------------~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (330)
..... .....++.++.+|++||+|+..+++.+++++..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~------------------------- 209 (314)
T TIGR01289 155 VPPKANLGDLSGLAAGFKAPIAMIDGKEFKGAKAYKDSKVCNMLTVRELHRRFHD------------------------- 209 (314)
T ss_pred CCCcccccccccccccCCCcccccCCCCcchhhhHHHhHHHHHHHHHHHHHHhcc-------------------------
Confidence 00000 011123456788999999999999999999851
Q ss_pred hhhhcccCCCCCcccccccccCCCCCCCCceeEEEeeCccc-ccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHH
Q psy13409 229 ILLCDANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVV-DTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTL 307 (330)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v-~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~ 307 (330)
. .||+|++|+||+| +|++.++.........+...+.....+.+|++.|+.++
T Consensus 210 ------------------------~---~gi~v~~v~PG~v~~T~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~ 262 (314)
T TIGR01289 210 ------------------------E---TGITFASLYPGCIADTGLFREHVPLFRTLFPPFQKYITKGYVSEEEAGERLA 262 (314)
T ss_pred ------------------------C---CCeEEEEecCCcccCCcccccccHHHHHHHHHHHHHHhccccchhhhhhhhH
Confidence 2 5899999999999 69987653321110001111111112679999999999
Q ss_pred HhhccccccccCceecccC
Q psy13409 308 YCALDKKCERETGLYYAKA 326 (330)
Q Consensus 308 ~l~~~~~~~~~~G~~~~~~ 326 (330)
+++.++.. ..+|.||.+.
T Consensus 263 ~~~~~~~~-~~~g~~~~~~ 280 (314)
T TIGR01289 263 QVVSDPKL-KKSGVYWSWG 280 (314)
T ss_pred HhhcCccc-CCCceeeecC
Confidence 99877543 3689999864
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=249.86 Aligned_cols=239 Identities=30% Similarity=0.367 Sum_probs=199.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
+++++++|||||+|+||.+++++|+++|++|++++|+.++.++..+.+.. +.++.++.+|+++++++++++++
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~ 74 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-------GGRAIAVAADVSDEADVEAAVAA 74 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-------CCeEEEEECCCCCHHHHHHHHHH
Confidence 57899999999999999999999999999999999999877766655532 35688999999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCC---CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 93 ILDNESAIHLLINNAGVMMC---PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~---~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
+.+.++++|++|||+|.... ..+.+.+++++.+++|+.+++.+++.+++.|.+++.++||++||..+..+.
T Consensus 75 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~------ 148 (251)
T PRK07231 75 ALERFGSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAIVNVASTAGLRPR------ 148 (251)
T ss_pred HHHHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcCCC------
Confidence 98889999999999997532 246788999999999999999999999999988778999999998876664
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
++...|+.+|++++.+++.++.++.
T Consensus 149 --------~~~~~y~~sk~~~~~~~~~~a~~~~----------------------------------------------- 173 (251)
T PRK07231 149 --------PGLGWYNASKGAVITLTKALAAELG----------------------------------------------- 173 (251)
T ss_pred --------CCchHHHHHHHHHHHHHHHHHHHhh-----------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCc--hhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSII--PGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
. .||++++|+||+++|++........ ..........+..++.+|+|+|+++++|++++ ..+++|+++...
T Consensus 174 ---~---~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~-~~~~~g~~~~~~ 245 (251)
T PRK07231 174 ---P---DKIRVNAVAPVVVETGLLEAFMGEPTPENRAKFLATIPLGRLGTPEDIANAALFLASDE-ASWITGVTLVVD 245 (251)
T ss_pred ---h---hCeEEEEEEECccCCCcchhhhcccChHHHHHHhcCCCCCCCcCHHHHHHHHHHHhCcc-ccCCCCCeEEEC
Confidence 4 6999999999999999876554321 11112222223334789999999999999654 568999987654
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=251.12 Aligned_cols=231 Identities=24% Similarity=0.291 Sum_probs=191.8
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
+++++|++|||||+++||++++++|+++|++|++++|+. +.. .+.++.++.+|++++++++++++
T Consensus 4 ~~~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~---------~~~------~~~~~~~~~~D~~~~~~~~~~~~ 68 (252)
T PRK08220 4 MDFSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF---------LTQ------EDYPFATFVLDVSDAAAVAQVCQ 68 (252)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch---------hhh------cCCceEEEEecCCCHHHHHHHHH
Confidence 568999999999999999999999999999999999986 111 24578899999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 92 EILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
++.+.++++|++|||+|.... ..+.+.+++++.+++|+.+++.+++.+++.|.+++.|+||++||..+..+.
T Consensus 69 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~ss~~~~~~~------ 142 (252)
T PRK08220 69 RLLAETGPLDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIVTVGSNAAHVPR------ 142 (252)
T ss_pred HHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECCchhccCC------
Confidence 999999999999999998653 356688999999999999999999999999988778999999998776553
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
++...|+++|++++.+++++++|+.
T Consensus 143 --------~~~~~Y~~sK~a~~~~~~~la~e~~----------------------------------------------- 167 (252)
T PRK08220 143 --------IGMAAYGASKAALTSLAKCVGLELA----------------------------------------------- 167 (252)
T ss_pred --------CCCchhHHHHHHHHHHHHHHHHHhh-----------------------------------------------
Confidence 5678999999999999999999998
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCchh--------hHHHHHHhhhhhccChHHHHHHHHHhhccccccccCce
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPG--------TAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGL 321 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~ 321 (330)
+ .||+||+|+||+|+|++.......... .+.........++.+|+|+|++++||+++ .+.+++|+
T Consensus 168 ---~---~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~-~~~~~~g~ 240 (252)
T PRK08220 168 ---P---YGVRCNVVSPGSTDTDMQRTLWVDEDGEQQVIAGFPEQFKLGIPLGKIARPQEIANAVLFLASD-LASHITLQ 240 (252)
T ss_pred ---H---hCeEEEEEecCcCcchhhhhhccchhhhhhhhhhHHHHHhhcCCCcccCCHHHHHHHHHHHhcc-hhcCccCc
Confidence 5 799999999999999986543221110 01111111222388999999999999965 46799998
Q ss_pred eccc
Q psy13409 322 YYAK 325 (330)
Q Consensus 322 ~~~~ 325 (330)
.+.-
T Consensus 241 ~i~~ 244 (252)
T PRK08220 241 DIVV 244 (252)
T ss_pred EEEE
Confidence 8754
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=250.80 Aligned_cols=234 Identities=27% Similarity=0.331 Sum_probs=191.7
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
++++|+++||||+++||++++++|+++|++|++++|+.+.+++..+++ +.++.++.+|+++.+++..+++.
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~---------~~~~~~~~~D~~~~~~~~~~~~~ 73 (249)
T PRK06500 3 RLQGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAEL---------GESALVIRADAGDVAAQKALAQA 73 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHh---------CCceEEEEecCCCHHHHHHHHHH
Confidence 578999999999999999999999999999999999977665544332 45688899999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 93 ILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
+.+.++++|++|||||..... .+.+.++++..+++|+.+++.+++.++|.|.+ .+++|+++|..+..+.
T Consensus 74 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~~~~i~~~S~~~~~~~------- 144 (249)
T PRK06500 74 LAEAFGRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLAN--PASIVLNGSINAHIGM------- 144 (249)
T ss_pred HHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhc--CCEEEEEechHhccCC-------
Confidence 999999999999999976432 56788999999999999999999999998854 4789999998877764
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
+....|+++|+++++++++++.|+.
T Consensus 145 -------~~~~~Y~~sK~a~~~~~~~la~e~~------------------------------------------------ 169 (249)
T PRK06500 145 -------PNSSVYAASKAALLSLAKTLSGELL------------------------------------------------ 169 (249)
T ss_pred -------CCccHHHHHHHHHHHHHHHHHHHhh------------------------------------------------
Confidence 5678999999999999999999988
Q ss_pred CCCCCCCceeEEEeeCcccccCcccccCCC-chhh---HHHHHHhhhhhccChHHHHHHHHHhhccccccccCceeccc
Q psy13409 251 PPGANITNVNTYAVHPGVVDTELSRHFDSI-IPGT---AWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAK 325 (330)
Q Consensus 251 ~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~ 325 (330)
. +||++++|+||.++|++.+..... .... ..........++.+|+|+|++++||+++ .+.+++|+.+.-
T Consensus 170 --~---~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~-~~~~~~g~~i~~ 242 (249)
T PRK06500 170 --P---RGIRVNAVSPGPVQTPLYGKLGLPEATLDAVAAQIQALVPLGRFGTPEEIAKAVLYLASD-ESAFIVGSEIIV 242 (249)
T ss_pred --h---cCeEEEEEeeCcCCCHHHHhhccCccchHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCc-cccCccCCeEEE
Confidence 5 799999999999999987543211 1111 1111111122378999999999999865 457999988754
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=249.95 Aligned_cols=239 Identities=25% Similarity=0.283 Sum_probs=199.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
|++|++|||||+++||++++++|+++|++|++++|+.+..+++.+.+.. .+.++.++.+|+++.++++++++.+
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~------~~~~~~~~~~d~~~~~~~~~~~~~~ 74 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRA------KGGNAQAFACDITDRDSVDTAVAAA 74 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHh------cCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 5789999999999999999999999999999999998887777666654 2567889999999999999999999
Q ss_pred HhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccc
Q psy13409 94 LDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDI 171 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~ 171 (330)
.+.++++|++|||+|.... ..+.+.++++..+++|+.+++.+++.+++.|.+.+.++||++||..+..+.
T Consensus 75 ~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss~~~~~~~-------- 146 (250)
T TIGR03206 75 EQALGPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIASDAARVGS-------- 146 (250)
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECchhhccCC--------
Confidence 9999999999999997543 245678889999999999999999999999988777899999998876664
Q ss_pred ccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCC
Q psy13409 172 NLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHP 251 (330)
Q Consensus 172 ~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (330)
+....|+++|+|++.+++++++++.
T Consensus 147 ------~~~~~Y~~sK~a~~~~~~~la~~~~------------------------------------------------- 171 (250)
T TIGR03206 147 ------SGEAVYAACKGGLVAFSKTMAREHA------------------------------------------------- 171 (250)
T ss_pred ------CCCchHHHHHHHHHHHHHHHHHHHh-------------------------------------------------
Confidence 5677899999999999999999987
Q ss_pred CCCCCCceeEEEeeCcccccCcccccCCCc----hhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 252 PGANITNVNTYAVHPGVVDTELSRHFDSII----PGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 252 ~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
. .+|++++|+||+++|++........ .....+.......++.+|+|+|+++++|+++ ...+++|+.+.-.
T Consensus 172 -~---~~i~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~-~~~~~~g~~~~~~ 245 (250)
T TIGR03206 172 -R---HGITVNVVCPGPTDTALLDDICGGAENPEKLREAFTRAIPLGRLGQPDDLPGAILFFSSD-DASFITGQVLSVS 245 (250)
T ss_pred -H---hCcEEEEEecCcccchhHHhhhhccCChHHHHHHHHhcCCccCCcCHHHHHHHHHHHcCc-ccCCCcCcEEEeC
Confidence 5 7999999999999999866542211 1111222222223378999999999999866 5679999988654
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=251.24 Aligned_cols=246 Identities=18% Similarity=0.181 Sum_probs=193.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
+++|+++||||++|||+++++.|+++|++|++++|+.+++++..+++.... ....+.++.||++|++++.++++++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~~Dl~d~~~~~~~~~~~ 77 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEF----KSKKLSLVELDITDQESLEEFLSKS 77 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhc----CCCceeEEEecCCCHHHHHHHHHHH
Confidence 579999999999999999999999999999999999988887777764432 2345677899999999999999999
Q ss_pred HhcCCCeeEEEEcCCCCC-----CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 94 LDNESAIHLLINNAGVMM-----CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~-----~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
.+.++++|++|||||... +..+.+.++++..+++|+.+++.+++.+++.|.+++.++||++||..+..+......
T Consensus 78 ~~~~~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~ 157 (256)
T PRK09186 78 AEKYGKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGNLVNISSIYGVVAPKFEIY 157 (256)
T ss_pred HHHcCCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCceEEEEechhhhccccchhc
Confidence 999999999999997542 235778899999999999999999999999998887789999999876543211000
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
...+......|+++|+++++++++++.|+.
T Consensus 158 ----~~~~~~~~~~Y~~sK~a~~~l~~~la~e~~---------------------------------------------- 187 (256)
T PRK09186 158 ----EGTSMTSPVEYAAIKAGIIHLTKYLAKYFK---------------------------------------------- 187 (256)
T ss_pred ----cccccCCcchhHHHHHHHHHHHHHHHHHhC----------------------------------------------
Confidence 011112334799999999999999999998
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
. .||+||+|+||.+.|+.... ............++.+|+|+|+++++++++. +.+++|+++...+
T Consensus 188 ----~---~~i~v~~i~Pg~~~~~~~~~------~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~-~~~~~g~~~~~~~ 252 (256)
T PRK09186 188 ----D---SNIRVNCVSPGGILDNQPEA------FLNAYKKCCNGKGMLDPDDICGTLVFLLSDQ-SKYITGQNIIVDD 252 (256)
T ss_pred ----c---CCeEEEEEecccccCCCCHH------HHHHHHhcCCccCCCCHHHhhhhHhheeccc-cccccCceEEecC
Confidence 5 79999999999998764211 1111111122233789999999999998664 5799999886543
|
|
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=250.96 Aligned_cols=237 Identities=23% Similarity=0.228 Sum_probs=191.4
Q ss_pred CCCCCCEEEEEcCCC--chHHHHHHHHHHCCCEEEEEecC-----------hhHHHHHHHHHHHhhcccCCCCeEEEEEc
Q psy13409 12 TRLDGKTAIVTGSNT--GIGKCTANELAKRGARVIMACRS-----------LEKAETAADDIRTSLKDVKDAGEVVIRQL 78 (330)
Q Consensus 12 ~~~~gk~aLITGas~--gIG~aia~~L~~~G~~Vil~~R~-----------~~~l~~~~~~l~~~~~~~~~~~~v~~i~~ 78 (330)
+++++|++|||||++ |||.+++++|+++|++|++++|+ ........+.+.. .+.++.++.+
T Consensus 1 ~~l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 74 (256)
T PRK12748 1 LPLMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIES------YGVRCEHMEI 74 (256)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHh------cCCeEEEEEC
Confidence 357899999999994 99999999999999999999987 2222223333322 2567999999
Q ss_pred cCCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcC
Q psy13409 79 DLSSLKSVRKCAQEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSS 156 (330)
Q Consensus 79 Dls~~~si~~l~~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS 156 (330)
|++++++++++++++.+.++++|++|||||.... ..+.+.++++..+++|+.+++.+++++++.|.++..++||++||
T Consensus 75 D~~~~~~~~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss 154 (256)
T PRK12748 75 DLSQPYAPNRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIINLTS 154 (256)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCeEEEEECC
Confidence 9999999999999999999999999999997643 35678889999999999999999999999997776789999999
Q ss_pred CCcccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccC
Q psy13409 157 LAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANL 236 (330)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (330)
..+..+. ++...|+++|++++.++++++.++.
T Consensus 155 ~~~~~~~--------------~~~~~Y~~sK~a~~~~~~~la~e~~---------------------------------- 186 (256)
T PRK12748 155 GQSLGPM--------------PDELAYAATKGAIEAFTKSLAPELA---------------------------------- 186 (256)
T ss_pred ccccCCC--------------CCchHHHHHHHHHHHHHHHHHHHHH----------------------------------
Confidence 8765543 5678899999999999999999998
Q ss_pred CCCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhcccccc
Q psy13409 237 QTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCE 316 (330)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~ 316 (330)
. .||+|++|+||+++|++..... ...........++.+|+|+|+.+++++++ .+.
T Consensus 187 ----------------~---~~i~v~~i~Pg~~~t~~~~~~~-----~~~~~~~~~~~~~~~~~~~a~~~~~l~~~-~~~ 241 (256)
T PRK12748 187 ----------------E---KGITVNAVNPGPTDTGWITEEL-----KHHLVPKFPQGRVGEPVDAARLIAFLVSE-EAK 241 (256)
T ss_pred ----------------H---hCeEEEEEEeCcccCCCCChhH-----HHhhhccCCCCCCcCHHHHHHHHHHHhCc-ccc
Confidence 5 7999999999999999754211 11111111112267899999999999855 467
Q ss_pred ccCceecccCC
Q psy13409 317 RETGLYYAKAD 327 (330)
Q Consensus 317 ~~~G~~~~~~~ 327 (330)
+++|+++....
T Consensus 242 ~~~g~~~~~d~ 252 (256)
T PRK12748 242 WITGQVIHSEG 252 (256)
T ss_pred cccCCEEEecC
Confidence 89999987654
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=256.60 Aligned_cols=240 Identities=22% Similarity=0.248 Sum_probs=195.7
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChh-HHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLE-KAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~-~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
..++++|++|||||++|||++++++|+++|++|++++|+.. .+++..+.++. .+.++.++.+|+++.++++++
T Consensus 41 ~~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~------~~~~~~~~~~Dl~~~~~~~~~ 114 (290)
T PRK06701 41 SGKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEK------EGVKCLLIPGDVSDEAFCKDA 114 (290)
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHh------cCCeEEEEEccCCCHHHHHHH
Confidence 35788999999999999999999999999999999999864 34444444433 256788999999999999999
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCC---CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCC
Q psy13409 90 AQEILDNESAIHLLINNAGVMMC---PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSM 166 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~---~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~ 166 (330)
++++.+.++++|++|||||.... ..+.+.++|...+++|+.+++.+++++++.|.+ .++||++||..+..+.
T Consensus 115 ~~~i~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~--~g~iV~isS~~~~~~~--- 189 (290)
T PRK06701 115 VEETVRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQ--GSAIINTGSITGYEGN--- 189 (290)
T ss_pred HHHHHHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhh--CCeEEEEecccccCCC---
Confidence 99999999999999999997543 356788999999999999999999999998854 4899999998877664
Q ss_pred cccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccc
Q psy13409 167 HFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKN 246 (330)
Q Consensus 167 ~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (330)
+.+..|+++|+|++.++++++.++.
T Consensus 190 -----------~~~~~Y~~sK~a~~~l~~~la~~~~-------------------------------------------- 214 (290)
T PRK06701 190 -----------ETLIDYSATKGAIHAFTRSLAQSLV-------------------------------------------- 214 (290)
T ss_pred -----------CCcchhHHHHHHHHHHHHHHHHHhh--------------------------------------------
Confidence 5667899999999999999999998
Q ss_pred cccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 247 VLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 247 ~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
. .||+|++|+||+|+|++....... .............++.+|+|+|+++++|+++ .+.+++|+.|...
T Consensus 215 ------~---~gIrv~~i~pG~v~T~~~~~~~~~-~~~~~~~~~~~~~~~~~~~dva~~~~~ll~~-~~~~~~G~~i~id 283 (290)
T PRK06701 215 ------Q---KGIRVNAVAPGPIWTPLIPSDFDE-EKVSQFGSNTPMQRPGQPEELAPAYVFLASP-DSSYITGQMLHVN 283 (290)
T ss_pred ------h---cCeEEEEEecCCCCCcccccccCH-HHHHHHHhcCCcCCCcCHHHHHHHHHHHcCc-ccCCccCcEEEeC
Confidence 5 799999999999999986543221 1111121222223378999999999999976 4578999988654
Q ss_pred C
Q psy13409 327 D 327 (330)
Q Consensus 327 ~ 327 (330)
.
T Consensus 284 g 284 (290)
T PRK06701 284 G 284 (290)
T ss_pred C
Confidence 3
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=248.84 Aligned_cols=238 Identities=28% Similarity=0.317 Sum_probs=196.2
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
.++++|+++||||+||||.+++++|+++|++|++++|+.+..+++.+.+... ..++.++.+|+++.++++++++
T Consensus 2 ~~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~ 75 (250)
T PRK07774 2 GRFDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVAD------GGTAIAVQVDVSDPDSAKAMAD 75 (250)
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEcCCCCHHHHHHHHH
Confidence 4578999999999999999999999999999999999987777776666542 4467889999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCC-----CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCC
Q psy13409 92 EILDNESAIHLLINNAGVMMC-----PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSM 166 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~-----~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~ 166 (330)
.+.+.++.+|++|||||.... ..+.+.+++++++++|+.+++.+++.+++.|.+.+.++||++||..+.
T Consensus 76 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~------ 149 (250)
T PRK07774 76 ATVSAFGGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSSTAAW------ 149 (250)
T ss_pred HHHHHhCCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEeccccc------
Confidence 999999999999999998532 246678899999999999999999999999988778999999997653
Q ss_pred cccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccc
Q psy13409 167 HFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKN 246 (330)
Q Consensus 167 ~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (330)
.+.+.|++||++++.+++++++++.
T Consensus 150 -----------~~~~~Y~~sK~a~~~~~~~l~~~~~-------------------------------------------- 174 (250)
T PRK07774 150 -----------LYSNFYGLAKVGLNGLTQQLARELG-------------------------------------------- 174 (250)
T ss_pred -----------CCccccHHHHHHHHHHHHHHHHHhC--------------------------------------------
Confidence 2346899999999999999999988
Q ss_pred cccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 247 VLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 247 ~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
. .||++++|+||+++|++.+...... ........+......+|+|+|+.+++++... ..+++|++|...
T Consensus 175 ------~---~~i~v~~v~pg~~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~-~~~~~g~~~~v~ 243 (250)
T PRK07774 175 ------G---MNIRVNAIAPGPIDTEATRTVTPKE-FVADMVKGIPLSRMGTPEDLVGMCLFLLSDE-ASWITGQIFNVD 243 (250)
T ss_pred ------c---cCeEEEEEecCcccCccccccCCHH-HHHHHHhcCCCCCCcCHHHHHHHHHHHhChh-hhCcCCCEEEEC
Confidence 5 7999999999999999876543221 1222222222233679999999999998653 357899988765
Q ss_pred C
Q psy13409 327 D 327 (330)
Q Consensus 327 ~ 327 (330)
.
T Consensus 244 ~ 244 (250)
T PRK07774 244 G 244 (250)
T ss_pred C
Confidence 4
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=249.92 Aligned_cols=236 Identities=26% Similarity=0.281 Sum_probs=197.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
|+++||||+|+||.+++++|+++|++|++++|+.+.+++..+++.. .+.++.++.+|+++++++.++++.+.+.
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~------~~~~~~~~~~Dl~~~~~i~~~~~~~~~~ 74 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQ------AGGKAVAYKLDVSDKDQVFSAIDQAAEK 74 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh------cCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999998877777777654 2567899999999999999999999999
Q ss_pred CCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCCccccccc
Q psy13409 97 ESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSMHFEDINL 173 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~~~~~~~~ 173 (330)
++++|++|||+|.... ..+.+.+++++.+++|+.+++.+++.+++.|.+.+ +++||++||..+..+.
T Consensus 75 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~---------- 144 (254)
T TIGR02415 75 FGGFDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAASIAGHEGN---------- 144 (254)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecchhhcCCC----------
Confidence 9999999999998643 25778899999999999999999999999998765 4899999998887774
Q ss_pred ccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCC
Q psy13409 174 EKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPG 253 (330)
Q Consensus 174 ~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (330)
+....|+++|++++.+++++++++. +
T Consensus 145 ----~~~~~Y~~sK~a~~~~~~~l~~~~~--------------------------------------------------~ 170 (254)
T TIGR02415 145 ----PILSAYSSTKFAVRGLTQTAAQELA--------------------------------------------------P 170 (254)
T ss_pred ----CCCcchHHHHHHHHHHHHHHHHHhc--------------------------------------------------c
Confidence 6788999999999999999999998 5
Q ss_pred CCCCceeEEEeeCcccccCcccccCCCc---------hhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecc
Q psy13409 254 ANITNVNTYAVHPGVVDTELSRHFDSII---------PGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYA 324 (330)
Q Consensus 254 ~~~~~i~v~~v~pG~v~t~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~ 324 (330)
.+|+|++|+||+++|++.+...... ...+.........++.+|+|+|++++||+++ .+.+++|+++.
T Consensus 171 ---~~i~v~~v~Pg~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~-~~~~~~g~~~~ 246 (254)
T TIGR02415 171 ---KGITVNAYCPGIVKTPMWEEIDEETSEIAGKPIGEGFEEFSSEIALGRPSEPEDVAGLVSFLASE-DSDYITGQSIL 246 (254)
T ss_pred ---cCeEEEEEecCcccChhhhhhhhhhhhcccCchHHHHHHHHhhCCCCCCCCHHHHHHHHHhhccc-ccCCccCcEEE
Confidence 7999999999999999865432210 0011111222222378999999999999966 46789999886
Q ss_pred cC
Q psy13409 325 KA 326 (330)
Q Consensus 325 ~~ 326 (330)
..
T Consensus 247 ~d 248 (254)
T TIGR02415 247 VD 248 (254)
T ss_pred ec
Confidence 54
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=248.38 Aligned_cols=237 Identities=27% Similarity=0.271 Sum_probs=191.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEe-cChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMAC-RSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~-R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.|+++||||++|||.++++.|+++|++|+++. |+.+.++...++++. .+.++.++.||+++.++++++++++.
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Dl~~~~~~~~~~~~~~ 75 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRA------AGGRACVVAGDVANEADVIAMFDAVQ 75 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh------cCCcEEEEEeccCCHHHHHHHHHHHH
Confidence 47899999999999999999999999988765 566666666666654 25678999999999999999999998
Q ss_pred hcCCCeeEEEEcCCCCCC---CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC---CCeEEEEcCCCcccCCCCCcc
Q psy13409 95 DNESAIHLLINNAGVMMC---PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA---PARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~---~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~---~g~IV~iSS~~~~~~~~~~~~ 168 (330)
+.++++|++|||||...+ ..+.+.++++.++++|+.+++.+++.+++.+..++ .++||++||.++..+.
T Consensus 76 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~----- 150 (248)
T PRK06947 76 SAFGRLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGS----- 150 (248)
T ss_pred HhcCCCCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcCCC-----
Confidence 888999999999997643 25678889999999999999999999999887653 4789999998887764
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
...+..|++||+++++++++++.++.
T Consensus 151 --------~~~~~~Y~~sK~~~~~~~~~la~~~~---------------------------------------------- 176 (248)
T PRK06947 151 --------PNEYVDYAGSKGAVDTLTLGLAKELG---------------------------------------------- 176 (248)
T ss_pred --------CCCCcccHhhHHHHHHHHHHHHHHhh----------------------------------------------
Confidence 12346799999999999999999998
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+ .||+|+.|+||+|+|++..... ...............+..+|+|+|+.+++++++ .+.+++|+++...
T Consensus 177 ----~---~~i~v~~i~Pg~v~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~va~~~~~l~~~-~~~~~~G~~~~~~ 245 (248)
T PRK06947 177 ----P---HGVRVNAVRPGLIETEIHASGG-QPGRAARLGAQTPLGRAGEADEVAETIVWLLSD-AASYVTGALLDVG 245 (248)
T ss_pred ----h---hCcEEEEEeccCcccccccccC-CHHHHHHHhhcCCCCCCcCHHHHHHHHHHHcCc-cccCcCCceEeeC
Confidence 5 7999999999999999865321 111111111111122368999999999999866 4579999998764
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=251.92 Aligned_cols=239 Identities=21% Similarity=0.225 Sum_probs=186.0
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh----hHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHH
Q psy13409 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL----EKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKS 85 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~----~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~s 85 (330)
.+.++++|+++||||++|||+++++.|+++|++|++++++. +.+++..++++. .+.++.++.+|++++++
T Consensus 2 ~~~~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~D~~~~~~ 75 (257)
T PRK12744 2 ADHSLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKA------AGAKAVAFQADLTTAAA 75 (257)
T ss_pred CCCCCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHH------hCCcEEEEecCcCCHHH
Confidence 35568999999999999999999999999999977776543 334444444433 24578899999999999
Q ss_pred HHHHHHHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEE-cCCCcccC
Q psy13409 86 VRKCAQEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINL-SSLAHTWG 162 (330)
Q Consensus 86 i~~l~~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~i-SS~~~~~~ 162 (330)
++++++++.+.++++|++|||||.... ..+.+.+++++.+++|+.+++.+++.++++|.+ .++++++ ||..+...
T Consensus 76 ~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~--~~~iv~~~ss~~~~~~ 153 (257)
T PRK12744 76 VEKLFDDAKAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLND--NGKIVTLVTSLLGAFT 153 (257)
T ss_pred HHHHHHHHHHhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhcc--CCCEEEEecchhcccC
Confidence 999999999989999999999998643 256788899999999999999999999998864 3677776 55444222
Q ss_pred CCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcc
Q psy13409 163 DGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNH 242 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (330)
+.+..|++||+|++.|++++++|++
T Consensus 154 ---------------~~~~~Y~~sK~a~~~~~~~la~e~~---------------------------------------- 178 (257)
T PRK12744 154 ---------------PFYSAYAGSKAPVEHFTRAASKEFG---------------------------------------- 178 (257)
T ss_pred ---------------CCcccchhhHHHHHHHHHHHHHHhC----------------------------------------
Confidence 4567899999999999999999998
Q ss_pred cccccccCCCCCCCCceeEEEeeCcccccCcccccCCCch--h-hH-HHHHHhhhhhccChHHHHHHHHHhhcccccccc
Q psy13409 243 YCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIP--G-TA-WLYQRVGGLFIKSPLQGAQTTLYCALDKKCERE 318 (330)
Q Consensus 243 ~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~--~-~~-~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~ 318 (330)
+ .||+||+|+||+|+|++......... . .. ....++...++.+|+|+|+.++||+++ ..++
T Consensus 179 ----------~---~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~--~~~~ 243 (257)
T PRK12744 179 ----------A---RGISVTAVGPGPMDTPFFYPQEGAEAVAYHKTAAALSPFSKTGLTDIEDIVPFIRFLVTD--GWWI 243 (257)
T ss_pred ----------c---CceEEEEEecCccccchhccccccchhhcccccccccccccCCCCCHHHHHHHHHHhhcc--ccee
Confidence 5 79999999999999997643211110 0 00 011233322478999999999999974 4688
Q ss_pred CceecccC
Q psy13409 319 TGLYYAKA 326 (330)
Q Consensus 319 ~G~~~~~~ 326 (330)
+|+.+.-.
T Consensus 244 ~g~~~~~~ 251 (257)
T PRK12744 244 TGQTILIN 251 (257)
T ss_pred ecceEeec
Confidence 99887644
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=248.20 Aligned_cols=239 Identities=27% Similarity=0.369 Sum_probs=196.0
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEec-ChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACR-SLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R-~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.++++|+++||||++|||.+++++|+++|++|+++.+ +.+..++..+.+.. .+.++.++.+|+++++++++++
T Consensus 2 ~~~~~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~D~~~~~~~~~~~ 75 (247)
T PRK12935 2 VQLNGKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGK------EGHDVYAVQADVSKVEDANRLV 75 (247)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHh------cCCeEEEEECCCCCHHHHHHHH
Confidence 3478999999999999999999999999999987654 45566666566543 2467899999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 91 QEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
+++.+.++++|++|||||..... .+.+.+.+++.+++|+.+++.+++.+++.|.+.+.+++|++||..+..+.
T Consensus 76 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~----- 150 (247)
T PRK12935 76 EEAVNHFGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISSIIGQAGG----- 150 (247)
T ss_pred HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchhhcCCC-----
Confidence 99999999999999999986543 46677999999999999999999999999987777899999998877664
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
+++..|+++|++++.++++++.++.
T Consensus 151 ---------~~~~~Y~~sK~a~~~~~~~l~~~~~---------------------------------------------- 175 (247)
T PRK12935 151 ---------FGQTNYSAAKAGMLGFTKSLALELA---------------------------------------------- 175 (247)
T ss_pred ---------CCCcchHHHHHHHHHHHHHHHHHHH----------------------------------------------
Confidence 5678999999999999999999997
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
+ .||+++.|+||+|+|++....... .............+..|+|+|+++++++.. .++++|+.|....
T Consensus 176 ----~---~~i~v~~v~pg~v~t~~~~~~~~~--~~~~~~~~~~~~~~~~~edva~~~~~~~~~--~~~~~g~~~~i~~ 243 (247)
T PRK12935 176 ----K---TNVTVNAICPGFIDTEMVAEVPEE--VRQKIVAKIPKKRFGQADEIAKGVVYLCRD--GAYITGQQLNING 243 (247)
T ss_pred ----H---cCcEEEEEEeCCCcChhhhhccHH--HHHHHHHhCCCCCCcCHHHHHHHHHHHcCc--ccCccCCEEEeCC
Confidence 5 799999999999999986643221 111111222223378999999999999854 2478998886543
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-32 Score=246.89 Aligned_cols=238 Identities=26% Similarity=0.259 Sum_probs=193.4
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChh-HHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLE-KAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~-~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
+++++|+++||||++|||+++++.|+++|++|+++.|+.. ..++..+++.. .+.++.++.+|+++.+++++++
T Consensus 1 ~~~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Dl~~~~~~~~~~ 74 (245)
T PRK12937 1 MTLSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEA------AGGRAIAVQADVADAAAVTRLF 74 (245)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHh------cCCeEEEEECCCCCHHHHHHHH
Confidence 3578999999999999999999999999999988877543 44555555543 2568999999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 91 QEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
+++.+.++++|++|||||.... ..+.+.+++++++++|+.+++.+++.+++.|.+ .++||++||..+..+.
T Consensus 75 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~--~~~iv~~ss~~~~~~~----- 147 (245)
T PRK12937 75 DAAETAFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQ--GGRIINLSTSVIALPL----- 147 (245)
T ss_pred HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhcc--CcEEEEEeeccccCCC-----
Confidence 9999999999999999997643 256778899999999999999999999998854 4899999998766553
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
+.+..|+++|++++.++++++++++
T Consensus 148 ---------~~~~~Y~~sK~a~~~~~~~~a~~~~---------------------------------------------- 172 (245)
T PRK12937 148 ---------PGYGPYAASKAAVEGLVHVLANELR---------------------------------------------- 172 (245)
T ss_pred ---------CCCchhHHHHHHHHHHHHHHHHHhh----------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
. .||++++|+||+++|++...... ......+....+..+..+|+|+|+.++|++++ .+.+++|+++.-.
T Consensus 173 ----~---~~i~v~~i~pg~~~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~a~~~~~l~~~-~~~~~~g~~~~~~ 241 (245)
T PRK12937 173 ----G---RGITVNAVAPGPVATELFFNGKS-AEQIDQLAGLAPLERLGTPEEIAAAVAFLAGP-DGAWVNGQVLRVN 241 (245)
T ss_pred ----h---cCeEEEEEEeCCccCchhcccCC-HHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCc-cccCccccEEEeC
Confidence 5 79999999999999998643221 11112222222222378999999999999865 5679999998654
|
|
| >TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=247.47 Aligned_cols=228 Identities=23% Similarity=0.302 Sum_probs=189.6
Q ss_pred EEEEcCCCchHHHHHHHHHHCCCEEEEEecC-hhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhcC
Q psy13409 19 AIVTGSNTGIGKCTANELAKRGARVIMACRS-LEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNE 97 (330)
Q Consensus 19 aLITGas~gIG~aia~~L~~~G~~Vil~~R~-~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~~ 97 (330)
++||||++|||.++++.|+++|++|++++|+ .+.+++..++++. .+.++.++.+|++++++++++++++.+.+
T Consensus 1 vlItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 74 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQA------QGGNARLLQFDVADRVACRTLLEADIAEH 74 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHH------cCCeEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 5899999999999999999999999998865 4556666666654 25679999999999999999999998989
Q ss_pred CCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHH-HHHhhhCCCeEEEEcCCCcccCCCCCcccccccc
Q psy13409 98 SAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLL-PRIIKSAPARIINLSSLAHTWGDGSMHFEDINLE 174 (330)
Q Consensus 98 g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l-~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~ 174 (330)
+++|++|||+|..... .+.+.++|+.++++|+.+++++++.++ |++.+++.++||++||..+..+.
T Consensus 75 ~~i~~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~~~~~~----------- 143 (239)
T TIGR01831 75 GAYYGVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVSGVMGN----------- 143 (239)
T ss_pred CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchhhccCC-----------
Confidence 9999999999976533 467889999999999999999999875 55555567899999999888775
Q ss_pred cCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCCC
Q psy13409 175 KGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGA 254 (330)
Q Consensus 175 ~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (330)
+.+..|+++|+++.+++++++.|+. +
T Consensus 144 ---~~~~~Y~~sK~a~~~~~~~la~e~~--------------------------------------------------~- 169 (239)
T TIGR01831 144 ---RGQVNYSAAKAGLIGATKALAVELA--------------------------------------------------K- 169 (239)
T ss_pred ---CCCcchHHHHHHHHHHHHHHHHHHh--------------------------------------------------H-
Confidence 5678999999999999999999998 5
Q ss_pred CCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCceeccc
Q psy13409 255 NITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAK 325 (330)
Q Consensus 255 ~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~ 325 (330)
.||+|++|+||+|+|++...... ..+... .++++ +.+|+|+|+.++||+++ .+.+++|+.+--
T Consensus 170 --~gi~v~~v~Pg~v~t~~~~~~~~---~~~~~~~~~~~~~--~~~~~~va~~~~~l~~~-~~~~~~g~~~~~ 234 (239)
T TIGR01831 170 --RKITVNCIAPGLIDTEMLAEVEH---DLDEALKTVPMNR--MGQPAEVASLAGFLMSD-GASYVTRQVISV 234 (239)
T ss_pred --hCeEEEEEEEccCccccchhhhH---HHHHHHhcCCCCC--CCCHHHHHHHHHHHcCc-hhcCccCCEEEe
Confidence 79999999999999998765422 111122 23444 88999999999999865 567999988643
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found. |
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=248.83 Aligned_cols=225 Identities=24% Similarity=0.299 Sum_probs=181.9
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
++++|+++||||++|||+++++.|+++|++|++++|+.... ...++.++.+|++++ +++
T Consensus 2 ~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~---------------~~~~~~~~~~D~~~~------~~~ 60 (235)
T PRK06550 2 EFMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKPD---------------LSGNFHFLQLDLSDD------LEP 60 (235)
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCcccc---------------cCCcEEEEECChHHH------HHH
Confidence 57899999999999999999999999999999999985321 134678899999987 344
Q ss_pred HHhcCCCeeEEEEcCCCCC---CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 93 ILDNESAIHLLINNAGVMM---CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~---~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
+.+.++++|++|||||... +..+.+.+++++.+++|+.+++.+++.+++.+.+++.++||++||..+..+.
T Consensus 61 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~------ 134 (235)
T PRK06550 61 LFDWVPSVDILCNTAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCSIASFVAG------ 134 (235)
T ss_pred HHHhhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccCC------
Confidence 4455688999999999753 3357788999999999999999999999999988778999999999887664
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
++...|+++|+++++++++++.|+.
T Consensus 135 --------~~~~~Y~~sK~a~~~~~~~la~~~~----------------------------------------------- 159 (235)
T PRK06550 135 --------GGGAAYTASKHALAGFTKQLALDYA----------------------------------------------- 159 (235)
T ss_pred --------CCCcccHHHHHHHHHHHHHHHHHhh-----------------------------------------------
Confidence 5678899999999999999999998
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+ .||+||+|+||+|+|++............+........++.+|+|+|+.++||+++ .+++++|+.+...
T Consensus 160 ---~---~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~s~-~~~~~~g~~~~~~ 229 (235)
T PRK06550 160 ---K---DGIQVFGIAPGAVKTPMTAADFEPGGLADWVARETPIKRWAEPEEVAELTLFLASG-KADYMQGTIVPID 229 (235)
T ss_pred ---h---cCeEEEEEeeCCccCcccccccCchHHHHHHhccCCcCCCCCHHHHHHHHHHHcCh-hhccCCCcEEEEC
Confidence 5 79999999999999998653322211112222222222378999999999999865 4679999988654
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=252.36 Aligned_cols=229 Identities=27% Similarity=0.317 Sum_probs=185.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
+++|+++||||+||||++++++|+++|++|++++|+.+++++.. ..++.++.+|++++++++++++++
T Consensus 1 ~~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~------------~~~~~~~~~Dv~~~~~~~~~~~~~ 68 (273)
T PRK06182 1 MQKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLA------------SLGVHPLSLDVTDEASIKAAVDTI 68 (273)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH------------hCCCeEEEeeCCCHHHHHHHHHHH
Confidence 36899999999999999999999999999999999987654432 123778999999999999999999
Q ss_pred HhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccc
Q psy13409 94 LDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDI 171 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~ 171 (330)
.+.++++|++|||||.... ..+.+.++++..+++|+.+++.+++.++|.|.+++.|+||++||..+..+.
T Consensus 69 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~~-------- 140 (273)
T PRK06182 69 IAEEGRIDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRSGRIINISSMGGKIYT-------- 140 (273)
T ss_pred HHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhcCCC--------
Confidence 9999999999999998653 357788999999999999999999999999988878999999998776553
Q ss_pred ccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCC
Q psy13409 172 NLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHP 251 (330)
Q Consensus 172 ~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (330)
+....|+++|+++++|+++++.|++
T Consensus 141 ------~~~~~Y~~sKaa~~~~~~~l~~e~~------------------------------------------------- 165 (273)
T PRK06182 141 ------PLGAWYHATKFALEGFSDALRLEVA------------------------------------------------- 165 (273)
T ss_pred ------CCccHhHHHHHHHHHHHHHHHHHhc-------------------------------------------------
Confidence 4556799999999999999999998
Q ss_pred CCCCCCceeEEEeeCcccccCcccccCCC-------chhh-------HHHHHHhhhhhccChHHHHHHHHHhhccc--cc
Q psy13409 252 PGANITNVNTYAVHPGVVDTELSRHFDSI-------IPGT-------AWLYQRVGGLFIKSPLQGAQTTLYCALDK--KC 315 (330)
Q Consensus 252 ~~~~~~~i~v~~v~pG~v~t~~~~~~~~~-------~~~~-------~~~~~~~~~~~~~~~~e~a~~~~~l~~~~--~~ 315 (330)
+ .||++++|+||+|+|++....... .... +.+....+..++.+|+|+|+.++++++.. ..
T Consensus 166 -~---~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vA~~i~~~~~~~~~~~ 241 (273)
T PRK06182 166 -P---FGIDVVVIEPGGIKTEWGDIAADHLLKTSGNGAYAEQAQAVAASMRSTYGSGRLSDPSVIADAISKAVTARRPKT 241 (273)
T ss_pred -c---cCCEEEEEecCCcccccchhhhhhhcccccccchHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHHHhCCCCCc
Confidence 5 799999999999999975322110 0000 01111112234789999999999999753 33
Q ss_pred cccCce
Q psy13409 316 ERETGL 321 (330)
Q Consensus 316 ~~~~G~ 321 (330)
.++.|.
T Consensus 242 ~~~~g~ 247 (273)
T PRK06182 242 RYAVGF 247 (273)
T ss_pred eeecCc
Confidence 455554
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-32 Score=244.86 Aligned_cols=226 Identities=22% Similarity=0.253 Sum_probs=179.6
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEec-ChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACR-SLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R-~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.++++|++|||||+||||++++++|+++|++|+++.+ +.+.++++.+++ .+.++.+|+++.+++.+++
T Consensus 2 ~~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~-----------~~~~~~~D~~~~~~~~~~~ 70 (237)
T PRK12742 2 GAFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQET-----------GATAVQTDSADRDAVIDVV 70 (237)
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHh-----------CCeEEecCCCCHHHHHHHH
Confidence 3578999999999999999999999999999988876 444444332221 2457889999998887776
Q ss_pred HHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 91 QEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
++ ++++|++|||||.... ..+.+.++|+..+++|+.+++.+++.+++.|.+ .++||++||..+...
T Consensus 71 ~~----~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~g~iv~isS~~~~~~------ 138 (237)
T PRK12742 71 RK----SGALDILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPE--GGRIIIIGSVNGDRM------ 138 (237)
T ss_pred HH----hCCCcEEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhc--CCeEEEEeccccccC------
Confidence 43 5789999999997643 356788999999999999999999999998853 589999999876321
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
+.+....|+++|++++.++++++.+++
T Consensus 139 -------~~~~~~~Y~~sKaa~~~~~~~la~~~~---------------------------------------------- 165 (237)
T PRK12742 139 -------PVAGMAAYAASKSALQGMARGLARDFG---------------------------------------------- 165 (237)
T ss_pred -------CCCCCcchHHhHHHHHHHHHHHHHHHh----------------------------------------------
Confidence 125678899999999999999999998
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+ +||+||+|+||+|+|++..... +..+... .++++ +.+|+|+|+.++||+++ .++++||+.+...
T Consensus 166 ----~---~gi~v~~v~Pg~~~t~~~~~~~---~~~~~~~~~~~~~~--~~~p~~~a~~~~~l~s~-~~~~~~G~~~~~d 232 (237)
T PRK12742 166 ----P---RGITINVVQPGPIDTDANPANG---PMKDMMHSFMAIKR--HGRPEEVAGMVAWLAGP-EASFVTGAMHTID 232 (237)
T ss_pred ----h---hCeEEEEEecCcccCCcccccc---HHHHHHHhcCCCCC--CCCHHHHHHHHHHHcCc-ccCcccCCEEEeC
Confidence 5 7999999999999999865322 1122221 23344 78999999999999865 5679999998654
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=260.58 Aligned_cols=218 Identities=23% Similarity=0.253 Sum_probs=176.7
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCC--HHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSS--LKSVRK 88 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~--~~si~~ 88 (330)
+.+..|++++||||++|||+++|++|+++|++|++++|+.++++++.++++..+ .+.++..+.+|+++ .+.++.
T Consensus 48 ~~~~~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~----~~~~~~~~~~Dl~~~~~~~~~~ 123 (320)
T PLN02780 48 NLKKYGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKY----SKTQIKTVVVDFSGDIDEGVKR 123 (320)
T ss_pred cccccCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHC----CCcEEEEEEEECCCCcHHHHHH
Confidence 334579999999999999999999999999999999999999998888886643 23578889999985 333444
Q ss_pred HHHHHHhcCCCeeEEEEcCCCCCC----CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCC
Q psy13409 89 CAQEILDNESAIHLLINNAGVMMC----PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDG 164 (330)
Q Consensus 89 l~~~i~~~~g~iDvlInnAG~~~~----~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~ 164 (330)
+.+.+. ..++|++|||||...+ ..+.+.+++++++++|+.+++.+++.++|.|.+++.|+||++||.++....
T Consensus 124 l~~~~~--~~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~a~~~~~- 200 (320)
T PLN02780 124 IKETIE--GLDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKGAIINIGSGAAIVIP- 200 (320)
T ss_pred HHHHhc--CCCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCcEEEEEechhhccCC-
Confidence 433321 1246799999998642 357788999999999999999999999999998888999999998875421
Q ss_pred CCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccc
Q psy13409 165 SMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYC 244 (330)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
+.+....|++||+++++|+++|+.|++
T Consensus 201 -----------~~p~~~~Y~aSKaal~~~~~~L~~El~------------------------------------------ 227 (320)
T PLN02780 201 -----------SDPLYAVYAATKAYIDQFSRCLYVEYK------------------------------------------ 227 (320)
T ss_pred -----------CCccchHHHHHHHHHHHHHHHHHHHHh------------------------------------------
Confidence 025678999999999999999999998
Q ss_pred cccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhcc
Q psy13409 245 KNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALD 312 (330)
Q Consensus 245 ~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~ 312 (330)
+ .||+|++|+||+|+|++...... .....+|+++|+.++..+..
T Consensus 228 --------~---~gI~V~~v~PG~v~T~~~~~~~~-------------~~~~~~p~~~A~~~~~~~~~ 271 (320)
T PLN02780 228 --------K---SGIDVQCQVPLYVATKMASIRRS-------------SFLVPSSDGYARAALRWVGY 271 (320)
T ss_pred --------c---cCeEEEEEeeCceecCcccccCC-------------CCCCCCHHHHHHHHHHHhCC
Confidence 6 79999999999999998752111 01145899999999998843
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=250.39 Aligned_cols=235 Identities=24% Similarity=0.291 Sum_probs=191.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
.++||+++||||++|||.+++++|+++|++|++++|+...+++..+++ . ..++.+|+++++++++++++
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~---------~--~~~~~~D~~~~~~~~~~~~~ 72 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEV---------G--GLFVPTDVTDEDAVNALFDT 72 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHc---------C--CcEEEeeCCCHHHHHHHHHH
Confidence 478999999999999999999999999999999999987665544432 1 15789999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCC----CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 93 ILDNESAIHLLINNAGVMMC----PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~----~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
+.+.++++|++|||||...+ ..+.+.+.+++.+++|+.+++.+++.+++.|.+++.++||++||..+..+.
T Consensus 73 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~g~iv~~sS~~~~~g~----- 147 (255)
T PRK06057 73 AAETYGSVDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGKGSIINTASFVAVMGS----- 147 (255)
T ss_pred HHHHcCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCCcEEEEEcchhhccCC-----
Confidence 99988999999999997643 245678889999999999999999999999988778999999998776663
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
.++...|+++|++++.++++++.++.
T Consensus 148 --------~~~~~~Y~~sKaal~~~~~~l~~~~~---------------------------------------------- 173 (255)
T PRK06057 148 --------ATSQISYTASKGGVLAMSRELGVQFA---------------------------------------------- 173 (255)
T ss_pred --------CCCCcchHHHHHHHHHHHHHHHHHHH----------------------------------------------
Confidence 13567899999999999999999998
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCch-hhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceeccc
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIP-GTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAK 325 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~ 325 (330)
+ .||+|++|+||+|+|++......... ...+.....+..++.+|+|+|+.+++|+++ .+.+++|+.+.-
T Consensus 174 ----~---~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~-~~~~~~g~~~~~ 243 (255)
T PRK06057 174 ----R---QGIRVNALCPGPVNTPLLQELFAKDPERAARRLVHVPMGRFAEPEEIAAAVAFLASD-DASFITASTFLV 243 (255)
T ss_pred ----h---hCcEEEEEeeCCcCCchhhhhccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCc-cccCccCcEEEE
Confidence 5 79999999999999998765432211 111111112222379999999999999876 467999987643
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-32 Score=251.92 Aligned_cols=214 Identities=28% Similarity=0.305 Sum_probs=186.7
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
++++++++||||+||||++++++|+++|++|++++|+.+.+++..+.+. ++.++.+|++++++++++++.
T Consensus 2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~----------~~~~~~~D~~~~~~~~~~~~~ 71 (273)
T PRK07825 2 DLRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAELG----------LVVGGPLDVTDPASFAAFLDA 71 (273)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc----------cceEEEccCCCHHHHHHHHHH
Confidence 5789999999999999999999999999999999999888766654431 467899999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 93 ILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
+.+.++.+|++|||||..... .+.+.+++++++++|+.+++.+++.++|.|.+++.|+||++||.++..+.
T Consensus 72 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------- 144 (273)
T PRK07825 72 VEADLGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGRGHVVNVASLAGKIPV------- 144 (273)
T ss_pred HHHHcCCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCccccCCC-------
Confidence 999999999999999986532 56788899999999999999999999999999888999999999887764
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
++...|++||+++++|+++++.|+.
T Consensus 145 -------~~~~~Y~asKaa~~~~~~~l~~el~------------------------------------------------ 169 (273)
T PRK07825 145 -------PGMATYCASKHAVVGFTDAARLELR------------------------------------------------ 169 (273)
T ss_pred -------CCCcchHHHHHHHHHHHHHHHHHhh------------------------------------------------
Confidence 6788999999999999999999998
Q ss_pred CCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhcccc
Q psy13409 251 PPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKK 314 (330)
Q Consensus 251 ~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~ 314 (330)
. .||++++|+||+|+|++....... ....+.+|+|+|+.+++++.++.
T Consensus 170 --~---~gi~v~~v~Pg~v~t~~~~~~~~~-----------~~~~~~~~~~va~~~~~~l~~~~ 217 (273)
T PRK07825 170 --G---TGVHVSVVLPSFVNTELIAGTGGA-----------KGFKNVEPEDVAAAIVGTVAKPR 217 (273)
T ss_pred --c---cCcEEEEEeCCcCcchhhcccccc-----------cCCCCCCHHHHHHHHHHHHhCCC
Confidence 5 799999999999999987654211 11126799999999999987654
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-32 Score=247.91 Aligned_cols=237 Identities=25% Similarity=0.268 Sum_probs=191.8
Q ss_pred EEEEcCCCchHHHHHHHHHHCCCEEEEEecC-hhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhcC
Q psy13409 19 AIVTGSNTGIGKCTANELAKRGARVIMACRS-LEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNE 97 (330)
Q Consensus 19 aLITGas~gIG~aia~~L~~~G~~Vil~~R~-~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~~ 97 (330)
++||||++|||+++++.|+++|++|++++|+ .+.++++.+.+.... ....+..+.+|++++++++++++++.+.+
T Consensus 2 ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (251)
T PRK07069 2 AFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAH----GEGVAFAAVQDVTDEAQWQALLAQAADAM 77 (251)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC----CCceEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 8999999999999999999999999999998 666666666654421 12346678999999999999999999999
Q ss_pred CCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccccccc
Q psy13409 98 SAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEK 175 (330)
Q Consensus 98 g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~ 175 (330)
+++|++|||||.... ..+.+.+++++++++|+.+++.+++.+++.|.+++.++||++||..+..+.
T Consensus 78 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~ss~~~~~~~------------ 145 (251)
T PRK07069 78 GGLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQPASIVNISSVAAFKAE------------ 145 (251)
T ss_pred CCccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEecChhhccCC------------
Confidence 999999999997653 256788899999999999999999999999988777999999999887664
Q ss_pred CCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCCCC
Q psy13409 176 GYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGAN 255 (330)
Q Consensus 176 ~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (330)
+.+..|+++|++++.++++++.|+... .
T Consensus 146 --~~~~~Y~~sK~a~~~~~~~la~e~~~~------------------------------------------------~-- 173 (251)
T PRK07069 146 --PDYTAYNASKAAVASLTKSIALDCARR------------------------------------------------G-- 173 (251)
T ss_pred --CCCchhHHHHHHHHHHHHHHHHHhccc------------------------------------------------C--
Confidence 677889999999999999999998721 2
Q ss_pred CCceeEEEeeCcccccCcccccCCC---chhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceeccc
Q psy13409 256 ITNVNTYAVHPGVVDTELSRHFDSI---IPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAK 325 (330)
Q Consensus 256 ~~~i~v~~v~pG~v~t~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~ 325 (330)
.+|+|++|+||+++|++....... ..............++.+|+|+|+.+++|+++ .+.+++|+.+--
T Consensus 174 -~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~-~~~~~~g~~i~~ 244 (251)
T PRK07069 174 -LDVRCNSIHPTFIRTGIVDPIFQRLGEEEATRKLARGVPLGRLGEPDDVAHAVLYLASD-ESRFVTGAELVI 244 (251)
T ss_pred -CcEEEEEEeecccCCcchhHHhhhccchhHHHHHhccCCCCCCcCHHHHHHHHHHHcCc-cccCccCCEEEE
Confidence 579999999999999987643221 11111111122222378999999999999865 467999988643
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-32 Score=253.94 Aligned_cols=225 Identities=21% Similarity=0.244 Sum_probs=188.2
Q ss_pred cccCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHH
Q psy13409 7 KCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSV 86 (330)
Q Consensus 7 ~~~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si 86 (330)
......++++|+++||||+||||++++++|+++|++|++++|+.+.+++..+++... +.++.++.+|++|++++
T Consensus 31 ~~~~~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~------~~~~~~~~~Dl~d~~~v 104 (293)
T PRK05866 31 PPRQPVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRA------GGDAMAVPCDLSDLDAV 104 (293)
T ss_pred CCCCCcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEccCCCHHHH
Confidence 334456789999999999999999999999999999999999998888877776542 45788999999999999
Q ss_pred HHHHHHHHhcCCCeeEEEEcCCCCCCC--CC--CChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccC
Q psy13409 87 RKCAQEILDNESAIHLLINNAGVMMCP--RQ--LTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWG 162 (330)
Q Consensus 87 ~~l~~~i~~~~g~iDvlInnAG~~~~~--~~--~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~ 162 (330)
+++++.+.+.++.+|++|||||..... .+ .++++++.++++|+.+++.+++.++|.|.+++.|+||++||.++..+
T Consensus 105 ~~~~~~~~~~~g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~ 184 (293)
T PRK05866 105 DALVADVEKRIGGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGDGHIINVATWGVLSE 184 (293)
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCC
Confidence 999999999999999999999986432 22 24578889999999999999999999998888899999999754332
Q ss_pred CCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcc
Q psy13409 163 DGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNH 242 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (330)
. .+....|++||+|+++|+++++.|+.
T Consensus 185 ~-------------~p~~~~Y~asKaal~~l~~~la~e~~---------------------------------------- 211 (293)
T PRK05866 185 A-------------SPLFSVYNASKAALSAVSRVIETEWG---------------------------------------- 211 (293)
T ss_pred C-------------CCCcchHHHHHHHHHHHHHHHHHHhc----------------------------------------
Confidence 1 25667899999999999999999998
Q ss_pred cccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhcccc
Q psy13409 243 YCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKK 314 (330)
Q Consensus 243 ~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~ 314 (330)
. .||+|++|+||+|+|++........ . ....+|+++|+.++..+..+.
T Consensus 212 ----------~---~gI~v~~v~pg~v~T~~~~~~~~~~--------~---~~~~~pe~vA~~~~~~~~~~~ 259 (293)
T PRK05866 212 ----------D---RGVHSTTLYYPLVATPMIAPTKAYD--------G---LPALTADEAAEWMVTAARTRP 259 (293)
T ss_pred ----------c---cCcEEEEEEcCcccCcccccccccc--------C---CCCCCHHHHHHHHHHHHhcCC
Confidence 5 7999999999999999875422100 0 114699999999999987654
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-32 Score=248.82 Aligned_cols=241 Identities=24% Similarity=0.275 Sum_probs=198.0
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
.++++|++|||||+|+||++++++|+++|++|++++|+++..++..+.++. .+.++.++.+|+++.++++.+++
T Consensus 3 ~~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~------~~~~~~~~~~Dl~~~~~~~~~~~ 76 (262)
T PRK13394 3 SNLNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINK------AGGKAIGVAMDVTNEDAVNAGID 76 (262)
T ss_pred ccCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHh------cCceEEEEECCCCCHHHHHHHHH
Confidence 357899999999999999999999999999999999999888888777754 25678899999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHH-hhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 92 EILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRI-IKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l-~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
.+.+.++.+|++|||+|..... .+.+.++++..+++|+.+++.+++.+++.| .+.+.++||++||..+..+.
T Consensus 77 ~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~ss~~~~~~~----- 151 (262)
T PRK13394 77 KVAERFGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGSVHSHEAS----- 151 (262)
T ss_pred HHHHHcCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEcchhhcCCC-----
Confidence 9988889999999999986432 466788899999999999999999999999 66667899999998776653
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
+....|+++|++++.++++++.++.
T Consensus 152 ---------~~~~~y~~sk~a~~~~~~~la~~~~---------------------------------------------- 176 (262)
T PRK13394 152 ---------PLKSAYVTAKHGLLGLARVLAKEGA---------------------------------------------- 176 (262)
T ss_pred ---------CCCcccHHHHHHHHHHHHHHHHHhh----------------------------------------------
Confidence 5667899999999999999999987
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCc------hhhHHHHHHh----hhhhccChHHHHHHHHHhhcccccccc
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSII------PGTAWLYQRV----GGLFIKSPLQGAQTTLYCALDKKCERE 318 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~------~~~~~~~~~~----~~~~~~~~~e~a~~~~~l~~~~~~~~~ 318 (330)
. .+|++++|+||+++|++........ ...+.....+ ....+.+++|+|++++++++.+ ...+
T Consensus 177 ----~---~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~a~~~l~~~~-~~~~ 248 (262)
T PRK13394 177 ----K---HNVRSHVVCPGFVRTPLVDKQIPEQAKELGISEEEVVKKVMLGKTVDGVFTTVEDVAQTVLFLSSFP-SAAL 248 (262)
T ss_pred ----h---cCeEEEEEeeCcccchhhhhhhHhhhhccCCChHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCcc-ccCC
Confidence 5 7999999999999999754332110 0011111111 1234889999999999998764 3578
Q ss_pred CceecccC
Q psy13409 319 TGLYYAKA 326 (330)
Q Consensus 319 ~G~~~~~~ 326 (330)
+|++|...
T Consensus 249 ~g~~~~~~ 256 (262)
T PRK13394 249 TGQSFVVS 256 (262)
T ss_pred cCCEEeeC
Confidence 99988654
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=254.88 Aligned_cols=255 Identities=31% Similarity=0.423 Sum_probs=196.1
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
.++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++.. .+.++.++.+|+++.++++++++
T Consensus 2 ~~~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~------~~~~~~~~~~Dl~~~~~v~~~~~ 75 (322)
T PRK07453 2 SQDAKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGI------PPDSYTIIHIDLGDLDSVRRFVD 75 (322)
T ss_pred CCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhc------cCCceEEEEecCCCHHHHHHHHH
Confidence 456899999999999999999999999999999999999888777766642 24578899999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCCC---CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCC--CeEEEEcCCCcccCCCC-
Q psy13409 92 EILDNESAIHLLINNAGVMMCP---RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAP--ARIINLSSLAHTWGDGS- 165 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~---~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~--g~IV~iSS~~~~~~~~~- 165 (330)
++.+.++++|+||||||+..+. .+.+.++++.++++|+.+++.+++.++|.|.+.+. ++||++||..+..+..+
T Consensus 76 ~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~~~~~~~~~~ 155 (322)
T PRK07453 76 DFRALGKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTVTANPKELGG 155 (322)
T ss_pred HHHHhCCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcccccCccccCC
Confidence 9888778999999999976432 35678899999999999999999999999987653 69999999876442100
Q ss_pred C--cccccc------------------cccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccc
Q psy13409 166 M--HFEDIN------------------LEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFS 225 (330)
Q Consensus 166 ~--~~~~~~------------------~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (330)
. ...+.+ ...++.+..+|+.||++++.+++.+++++..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~---------------------- 213 (322)
T PRK07453 156 KIPIPAPADLGDLSGFEAGFKAPISMADGKKFKPGKAYKDSKLCNMLTMRELHRRYHE---------------------- 213 (322)
T ss_pred ccCCCCccchhhhhcchhcccccccccCccCCCccchhhHhHHHHHHHHHHHHHhhcc----------------------
Confidence 0 000000 0123456678999999999999999999852
Q ss_pred hhhhhhhcccCCCCCcccccccccCCCCCCCCceeEEEeeCccc-ccCcccccCCCch-hhHHHHHHhhhhhccChHHHH
Q psy13409 226 NLTILLCDANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVV-DTELSRHFDSIIP-GTAWLYQRVGGLFIKSPLQGA 303 (330)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v-~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~e~a 303 (330)
. .||+|++|+||+| .|++.++...... ...++..... ....++++.|
T Consensus 214 ---------------------------~---~gi~v~~v~PG~v~~t~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 262 (322)
T PRK07453 214 ---------------------------S---TGITFSSLYPGCVADTPLFRNTPPLFQKLFPWFQKNIT-GGYVSQELAG 262 (322)
T ss_pred ---------------------------c---CCeEEEEecCCcccCCcccccCCHHHHHHHHHHHHHHh-hceecHHHHh
Confidence 3 6899999999999 6998765432111 1111111111 2256899999
Q ss_pred HHHHHhhccccccccCceecccC
Q psy13409 304 QTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 304 ~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+.+++++.++.. ..+|.||.+.
T Consensus 263 ~~~~~~~~~~~~-~~~G~y~~~~ 284 (322)
T PRK07453 263 ERVAQVVADPEF-AQSGVHWSWG 284 (322)
T ss_pred hHHHHhhcCccc-CCCCceeecC
Confidence 999999887754 4699999853
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-32 Score=245.05 Aligned_cols=238 Identities=28% Similarity=0.329 Sum_probs=198.7
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
|++++|+++||||+|+||.+++++|+++|++|++++|+.+...+..+.+. .+.++.++.+|++|+++++++++
T Consensus 1 m~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-------~~~~~~~~~~D~~~~~~~~~~~~ 73 (252)
T PRK06138 1 MRLAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-------AGGRAFARQGDVGSAEAVEALVD 73 (252)
T ss_pred CCCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-------cCCeEEEEEcCCCCHHHHHHHHH
Confidence 35789999999999999999999999999999999999887766665553 25678999999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 92 EILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
.+.+.++++|++|||+|..... .+.+.++++..+++|+.+++.+++.+++.|.+++.++||++||..+..+.
T Consensus 74 ~i~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~~~------ 147 (252)
T PRK06138 74 FVAARWGRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQGGGSIVNTASQLALAGG------ 147 (252)
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCeEEEEECChhhccCC------
Confidence 9999999999999999986533 56788999999999999999999999999988778999999999887764
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
+....|+.+|++++.++++++.|+.
T Consensus 148 --------~~~~~Y~~sK~a~~~~~~~l~~~~~----------------------------------------------- 172 (252)
T PRK06138 148 --------RGRAAYVASKGAIASLTRAMALDHA----------------------------------------------- 172 (252)
T ss_pred --------CCccHHHHHHHHHHHHHHHHHHHHH-----------------------------------------------
Confidence 5678899999999999999999997
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCc---h-hhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCceec
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSII---P-GTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYY 323 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~---~-~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~ 323 (330)
. .||+|++|+||++.|++........ . ...... .+.++ +.+++|+|+.+++++..+ ..+.+|.++
T Consensus 173 ---~---~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~a~~~~~l~~~~-~~~~~g~~~ 243 (252)
T PRK06138 173 ---T---DGIRVNAVAPGTIDTPYFRRIFARHADPEALREALRARHPMNR--FGTAEEVAQAALFLASDE-SSFATGTTL 243 (252)
T ss_pred ---h---cCeEEEEEEECCccCcchhhhhccccChHHHHHHHHhcCCCCC--CcCHHHHHHHHHHHcCch-hcCccCCEE
Confidence 5 7999999999999999876543211 1 111111 12222 678999999999998664 468899887
Q ss_pred ccC
Q psy13409 324 AKA 326 (330)
Q Consensus 324 ~~~ 326 (330)
...
T Consensus 244 ~~~ 246 (252)
T PRK06138 244 VVD 246 (252)
T ss_pred EEC
Confidence 543
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-32 Score=245.04 Aligned_cols=206 Identities=16% Similarity=0.122 Sum_probs=169.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhcC
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNE 97 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~~ 97 (330)
+++||||++|||+++++.|+++|++|++++|+.+++++..+++ ++.++.+|++++++++++++.+.+
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~~-----------~~~~~~~D~~~~~~v~~~~~~~~~-- 68 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKEL-----------DVDAIVCDNTDPASLEEARGLFPH-- 68 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc-----------cCcEEecCCCCHHHHHHHHHHHhh--
Confidence 5899999999999999999999999999999987766554432 245789999999999999887643
Q ss_pred CCeeEEEEcCCCCC----CC----CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 98 SAIHLLINNAGVMM----CP----RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 98 g~iDvlInnAG~~~----~~----~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
++|++|||+|... +. .+ +.++|++++++|+.+++++++.++|.|.+ +|+||++||.+.
T Consensus 69 -~id~lv~~ag~~~~~~~~~~~~~~~-~~~~~~~~~~~N~~~~~~~~~~~~~~~~~--~g~Iv~isS~~~---------- 134 (223)
T PRK05884 69 -HLDTIVNVPAPSWDAGDPRTYSLAD-TANAWRNALDATVLSAVLTVQSVGDHLRS--GGSIISVVPENP---------- 134 (223)
T ss_pred -cCcEEEECCCccccCCCCcccchhc-CHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCeEEEEecCCC----------
Confidence 5899999998531 11 12 46889999999999999999999999964 489999999651
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
+...+|+++|+|+.+|+++++.|+.
T Consensus 135 --------~~~~~Y~asKaal~~~~~~la~e~~----------------------------------------------- 159 (223)
T PRK05884 135 --------PAGSAEAAIKAALSNWTAGQAAVFG----------------------------------------------- 159 (223)
T ss_pred --------CCccccHHHHHHHHHHHHHHHHHhh-----------------------------------------------
Confidence 3457899999999999999999998
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+ +|||||+|+||+|+|++...... .+ ..+|+|+|+.++||+++ .++++||+.+...
T Consensus 160 ---~---~gI~v~~v~PG~v~t~~~~~~~~---------~p-----~~~~~~ia~~~~~l~s~-~~~~v~G~~i~vd 215 (223)
T PRK05884 160 ---T---RGITINAVACGRSVQPGYDGLSR---------TP-----PPVAAEIARLALFLTTP-AARHITGQTLHVS 215 (223)
T ss_pred ---h---cCeEEEEEecCccCchhhhhccC---------CC-----CCCHHHHHHHHHHHcCc-hhhccCCcEEEeC
Confidence 5 79999999999999986533211 01 24899999999999865 5689999988654
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=247.44 Aligned_cols=225 Identities=20% Similarity=0.259 Sum_probs=191.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
|+++||||+||||++++++|+++|++|++++|+.+++++..+.++. .+.++.++.||++++++++.+++.+.+.
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~------~~~~~~~~~~D~~~~~~~~~~~~~i~~~ 74 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLRE------AGGDGFYQRCDVRDYSQLTALAQACEEK 74 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh------cCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999888888777765 2567889999999999999999999998
Q ss_pred CCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccc
Q psy13409 97 ESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLE 174 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~ 174 (330)
++++|++|||||.... ..+.+.+++++++++|+.+++.+++.++|.|.+++.++||++||..+..+.
T Consensus 75 ~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~vsS~~~~~~~----------- 143 (270)
T PRK05650 75 WGGIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKSGRIVNIASMAGLMQG----------- 143 (270)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEECChhhcCCC-----------
Confidence 8999999999998754 367788999999999999999999999999988777999999999887664
Q ss_pred cCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCCC
Q psy13409 175 KGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGA 254 (330)
Q Consensus 175 ~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (330)
+....|+++|+++++++++++.|+. .
T Consensus 144 ---~~~~~Y~~sKaa~~~~~~~l~~e~~--------------------------------------------------~- 169 (270)
T PRK05650 144 ---PAMSSYNVAKAGVVALSETLLVELA--------------------------------------------------D- 169 (270)
T ss_pred ---CCchHHHHHHHHHHHHHHHHHHHhc--------------------------------------------------c-
Confidence 6778999999999999999999998 5
Q ss_pred CCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhcccc
Q psy13409 255 NITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKK 314 (330)
Q Consensus 255 ~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~ 314 (330)
.||++++|+||+|+|++........+...............+++|+|+.++..+.++.
T Consensus 170 --~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vA~~i~~~l~~~~ 227 (270)
T PRK05650 170 --DEIGVHVVCPSFFQTNLLDSFRGPNPAMKAQVGKLLEKSPITAADIADYIYQQVAKGE 227 (270)
T ss_pred --cCcEEEEEecCccccCcccccccCchhHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCC
Confidence 7999999999999999877654332222222222222235799999999999987654
|
|
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=243.63 Aligned_cols=235 Identities=26% Similarity=0.306 Sum_probs=189.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEec-ChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACR-SLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R-~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
+|++|||||+++||.+++++|+++|++|+++.+ +.+..++..+.+.. .+.++.++.+|+++.++++++++.+.
T Consensus 2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~Dl~~~~~~~~~~~~~~ 75 (248)
T PRK06123 2 RKVMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRR------QGGEALAVAADVADEADVLRLFEAVD 75 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHh------CCCcEEEEEeccCCHHHHHHHHHHHH
Confidence 579999999999999999999999999888874 45555555555543 24568899999999999999999999
Q ss_pred hcCCCeeEEEEcCCCCCC---CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC---CCeEEEEcCCCcccCCCCCcc
Q psy13409 95 DNESAIHLLINNAGVMMC---PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA---PARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~---~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~---~g~IV~iSS~~~~~~~~~~~~ 168 (330)
+.++++|++|||||...+ ..+.+.++|+.++++|+.+++.+++.+++.|.++. .|+||++||.++..+.
T Consensus 76 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~----- 150 (248)
T PRK06123 76 RELGRLDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLGS----- 150 (248)
T ss_pred HHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcCCC-----
Confidence 999999999999998643 25678889999999999999999999999987642 4789999999887764
Q ss_pred cccccccCCCc-chhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 169 EDINLEKGYSA-TGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 169 ~~~~~~~~~~~-~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
+. +..|+++|+++++|+++++.++.
T Consensus 151 ---------~~~~~~Y~~sKaa~~~~~~~la~~~~--------------------------------------------- 176 (248)
T PRK06123 151 ---------PGEYIDYAASKGAIDTMTIGLAKEVA--------------------------------------------- 176 (248)
T ss_pred ---------CCCccchHHHHHHHHHHHHHHHHHhc---------------------------------------------
Confidence 22 35799999999999999999998
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCceeccc
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAK 325 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~ 325 (330)
+ +||+|++|+||+|.|++..... ......... .++++ ..+|+|+|+++++++++ ..++++|++|..
T Consensus 177 -----~---~~i~v~~i~pg~v~~~~~~~~~-~~~~~~~~~~~~p~~~--~~~~~d~a~~~~~l~~~-~~~~~~g~~~~~ 244 (248)
T PRK06123 177 -----A---EGIRVNAVRPGVIYTEIHASGG-EPGRVDRVKAGIPMGR--GGTAEEVARAILWLLSD-EASYTTGTFIDV 244 (248)
T ss_pred -----c---cCeEEEEEecCcccCchhhccC-CHHHHHHHHhcCCCCC--CcCHHHHHHHHHHHhCc-cccCccCCEEee
Confidence 5 7999999999999999754321 111111111 23333 67999999999999865 456899999876
Q ss_pred CC
Q psy13409 326 AD 327 (330)
Q Consensus 326 ~~ 327 (330)
..
T Consensus 245 ~g 246 (248)
T PRK06123 245 SG 246 (248)
T ss_pred cC
Confidence 43
|
|
| >TIGR02685 pter_reduc_Leis pteridine reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-32 Score=249.39 Aligned_cols=234 Identities=20% Similarity=0.163 Sum_probs=179.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEec-ChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHH----HHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACR-SLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSV----RKCAQ 91 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R-~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si----~~l~~ 91 (330)
++++||||++|||++++++|+++|++|++++| +.+.+++..+++... .+.++.++.+|++|++++ +.+++
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~Dv~d~~~~~~~~~~~~~ 76 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEGYRVVLHYHRSAAAASTLAAELNAR-----RPNSAVTCQADLSNSATLFSRCEAIID 76 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCCCeEEEEcCCcHHHHHHHHHHHHhc-----cCCceEEEEccCCCchhhHHHHHHHHH
Confidence 68999999999999999999999999999865 456666666666432 245677899999999865 55666
Q ss_pred HHHhcCCCeeEEEEcCCCCCCC--CCCCh-----------hhHHHhHHHHHHHHHHHHHHHHHHHhhh------CCCeEE
Q psy13409 92 EILDNESAIHLLINNAGVMMCP--RQLTE-----------DGYELQFATNHLGHYLFTLLLLPRIIKS------APARII 152 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~--~~~~~-----------~~~~~~l~vN~~g~~~l~~~~l~~l~~~------~~g~IV 152 (330)
.+.+.++++|+||||||...+. .+.+. .++.+++++|+.+++.+++.++++|.+. ..++||
T Consensus 77 ~~~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv 156 (267)
T TIGR02685 77 ACFRAFGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNLSIV 156 (267)
T ss_pred HHHHccCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCeEEE
Confidence 6667789999999999975432 12222 3588999999999999999999998653 246899
Q ss_pred EEcCCCcccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhh
Q psy13409 153 NLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLC 232 (330)
Q Consensus 153 ~iSS~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (330)
+++|..+..+. +.+.+|++||+|+++|+++|+.|++
T Consensus 157 ~~~s~~~~~~~--------------~~~~~Y~asK~a~~~~~~~la~e~~------------------------------ 192 (267)
T TIGR02685 157 NLCDAMTDQPL--------------LGFTMYTMAKHALEGLTRSAALELA------------------------------ 192 (267)
T ss_pred EehhhhccCCC--------------cccchhHHHHHHHHHHHHHHHHHHh------------------------------
Confidence 99998776553 6778999999999999999999998
Q ss_pred cccCCCCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH-HHhhhhhccChHHHHHHHHHhhc
Q psy13409 233 DANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY-QRVGGLFIKSPLQGAQTTLYCAL 311 (330)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~a~~~~~l~~ 311 (330)
+ .||+||+|+||+++|+.... . .....+.. .+++ .++.+|+|+|+.++||++
T Consensus 193 --------------------~---~gi~v~~v~PG~~~~~~~~~--~-~~~~~~~~~~~~~-~~~~~~~~va~~~~~l~~ 245 (267)
T TIGR02685 193 --------------------P---LQIRVNGVAPGLSLLPDAMP--F-EVQEDYRRKVPLG-QREASAEQIADVVIFLVS 245 (267)
T ss_pred --------------------h---hCeEEEEEecCCccCccccc--h-hHHHHHHHhCCCC-cCCCCHHHHHHHHHHHhC
Confidence 5 79999999999998763211 1 11111111 1222 126899999999999986
Q ss_pred cccccccCceecccCC
Q psy13409 312 DKKCERETGLYYAKAD 327 (330)
Q Consensus 312 ~~~~~~~~G~~~~~~~ 327 (330)
. .+++++|+.+...+
T Consensus 246 ~-~~~~~~G~~~~v~g 260 (267)
T TIGR02685 246 P-KAKYITGTCIKVDG 260 (267)
T ss_pred c-ccCCcccceEEECC
Confidence 5 56799999886543
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. |
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=243.52 Aligned_cols=236 Identities=24% Similarity=0.303 Sum_probs=193.7
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
+++|++++||||++|||.++++.|+++|++|++++|+.+++++..+++... +.++.++.+|+++.++++++++.
T Consensus 2 ~~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~ 75 (253)
T PRK08217 2 DLKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGAL------GTEVRGYAANVTDEEDVEATFAQ 75 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCceEEEEcCCCCHHHHHHHHHH
Confidence 578999999999999999999999999999999999998887777776542 56788999999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCCC-----------CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhh-CCCeEEEEcCCCcc
Q psy13409 93 ILDNESAIHLLINNAGVMMCP-----------RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKS-APARIINLSSLAHT 160 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~-----------~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~-~~g~IV~iSS~~~~ 160 (330)
+.+.++++|++|||+|..... .+.+.++++.++++|+.+++.+.+.+++.|.++ ..+.||++||.. .
T Consensus 76 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~~~iv~~ss~~-~ 154 (253)
T PRK08217 76 IAEDFGQLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISSIA-R 154 (253)
T ss_pred HHHHcCCCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEcccc-c
Confidence 988888999999999975421 455778899999999999999999999999776 357899998864 3
Q ss_pred cCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCC
Q psy13409 161 WGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPT 240 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (330)
.+. ++...|+++|+|++.+++++++++.
T Consensus 155 ~~~--------------~~~~~Y~~sK~a~~~l~~~la~~~~-------------------------------------- 182 (253)
T PRK08217 155 AGN--------------MGQTNYSASKAGVAAMTVTWAKELA-------------------------------------- 182 (253)
T ss_pred cCC--------------CCCchhHHHHHHHHHHHHHHHHHHH--------------------------------------
Confidence 443 5678999999999999999999997
Q ss_pred cccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCc
Q psy13409 241 NHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETG 320 (330)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G 320 (330)
. .||++++|+||+|+|++.....+. ..+.........++.+|+|+|+.+++|+.+ .+++|
T Consensus 183 ------------~---~~i~v~~v~pg~v~t~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~---~~~~g 242 (253)
T PRK08217 183 ------------R---YGIRVAAIAPGVIETEMTAAMKPE--ALERLEKMIPVGRLGEPEEIAHTVRFIIEN---DYVTG 242 (253)
T ss_pred ------------H---cCcEEEEEeeCCCcCccccccCHH--HHHHHHhcCCcCCCcCHHHHHHHHHHHHcC---CCcCC
Confidence 5 799999999999999987554321 111111112222378999999999999843 47899
Q ss_pred eecccCC
Q psy13409 321 LYYAKAD 327 (330)
Q Consensus 321 ~~~~~~~ 327 (330)
+.|....
T Consensus 243 ~~~~~~g 249 (253)
T PRK08217 243 RVLEIDG 249 (253)
T ss_pred cEEEeCC
Confidence 9887543
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=245.25 Aligned_cols=241 Identities=22% Similarity=0.250 Sum_probs=197.1
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCE-EEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGAR-VIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~-Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
.+++|+++||||+++||++++++|+++|++ |++++|+.+...+..+.+.. .+.++.++.+|+++++++.++++
T Consensus 3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~------~~~~~~~~~~D~~~~~~~~~~~~ 76 (260)
T PRK06198 3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEA------LGAKAVFVQADLSDVEDCRRVVA 76 (260)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHh------cCCeEEEEEccCCCHHHHHHHHH
Confidence 478999999999999999999999999998 99999998777766666643 35678889999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCCcc
Q psy13409 92 EILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~~~ 168 (330)
.+.+.++++|++|||+|..... .+.+.+.++..+++|+.+++.+++.+++.|.+++ .+++|++||..+..+.
T Consensus 77 ~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~----- 151 (260)
T PRK06198 77 AADEAFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHGGQ----- 151 (260)
T ss_pred HHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCC-----
Confidence 9988889999999999976532 4678899999999999999999999999997654 5899999998876553
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
+....|+++|+++++++++++.|+.
T Consensus 152 ---------~~~~~Y~~sK~a~~~~~~~~a~e~~---------------------------------------------- 176 (260)
T PRK06198 152 ---------PFLAAYCASKGALATLTRNAAYALL---------------------------------------------- 176 (260)
T ss_pred ---------CCcchhHHHHHHHHHHHHHHHHHhc----------------------------------------------
Confidence 5678899999999999999999998
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCC----C-chhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceec
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDS----I-IPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYY 323 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~ 323 (330)
. .+|+|++|+||+++|++...... . ....+.........+..+++|+|+.+++++++ ..++++|++|
T Consensus 177 ----~---~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~-~~~~~~G~~~ 248 (260)
T PRK06198 177 ----R---NRIRVNGLNIGWMATEGEDRIQREFHGAPDDWLEKAAATQPFGRLLDPDEVARAVAFLLSD-ESGLMTGSVI 248 (260)
T ss_pred ----c---cCeEEEEEeeccccCcchhhhhhhccCCChHHHHHHhccCCccCCcCHHHHHHHHHHHcCh-hhCCccCceE
Confidence 5 79999999999999997532111 1 11111111111122267999999999999866 4678999998
Q ss_pred ccCC
Q psy13409 324 AKAD 327 (330)
Q Consensus 324 ~~~~ 327 (330)
.+.+
T Consensus 249 ~~~~ 252 (260)
T PRK06198 249 DFDQ 252 (260)
T ss_pred eECC
Confidence 7765
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=244.33 Aligned_cols=240 Identities=27% Similarity=0.309 Sum_probs=199.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
+++|+++||||+++||++++++|+++|++|++++|+.+++++..+++.. .+.++.++.||++++++++++++++
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~------~~~~~~~~~~Dl~~~~~~~~~~~~~ 75 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQK------AGGKAIGVAMDVTDEEAINAGIDYA 75 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh------cCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999888877777654 2567899999999999999999999
Q ss_pred HhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccc
Q psy13409 94 LDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDI 171 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~ 171 (330)
.+.++.+|++|||||..... .+.+.++++..+++|+.+++.+++.+++.|.+++.++||++||..+..+.
T Consensus 76 ~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~~~-------- 147 (258)
T PRK12429 76 VETFGGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGGGRIINMASVHGLVGS-------- 147 (258)
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCeEEEEEcchhhccCC--------
Confidence 99999999999999976543 56678889999999999999999999999998888999999999887764
Q ss_pred ccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCC
Q psy13409 172 NLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHP 251 (330)
Q Consensus 172 ~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (330)
++...|+++|++++.+++.++.++.
T Consensus 148 ------~~~~~y~~~k~a~~~~~~~l~~~~~------------------------------------------------- 172 (258)
T PRK12429 148 ------AGKAAYVSAKHGLIGLTKVVALEGA------------------------------------------------- 172 (258)
T ss_pred ------CCcchhHHHHHHHHHHHHHHHHHhc-------------------------------------------------
Confidence 6788999999999999999999987
Q ss_pred CCCCCCceeEEEeeCcccccCcccccCCC------chhhH----HHHHHhhhhhccChHHHHHHHHHhhccccccccCce
Q psy13409 252 PGANITNVNTYAVHPGVVDTELSRHFDSI------IPGTA----WLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGL 321 (330)
Q Consensus 252 ~~~~~~~i~v~~v~pG~v~t~~~~~~~~~------~~~~~----~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~ 321 (330)
. .+|++++|+||+++|++....... ..... ..........+.+++|+|+.+++|+.+. ...++|+
T Consensus 173 -~---~~i~v~~~~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~l~~~~-~~~~~g~ 247 (258)
T PRK12429 173 -T---HGVTVNAICPGYVDTPLVRKQIPDLAKERGISEEEVLEDVLLPLVPQKRFTTVEEIADYALFLASFA-AKGVTGQ 247 (258)
T ss_pred -c---cCeEEEEEecCCCcchhhhhhhhhhccccCCChHHHHHHHHhccCCccccCCHHHHHHHHHHHcCcc-ccCccCC
Confidence 5 799999999999999876432111 00011 1111112234889999999999998664 4578899
Q ss_pred ecccCC
Q psy13409 322 YYAKAD 327 (330)
Q Consensus 322 ~~~~~~ 327 (330)
+|...+
T Consensus 248 ~~~~~~ 253 (258)
T PRK12429 248 AWVVDG 253 (258)
T ss_pred eEEeCC
Confidence 887654
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=272.02 Aligned_cols=230 Identities=22% Similarity=0.256 Sum_probs=192.9
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
..+.++++|||||+||||++++++|+++|++|++++|+.++++++.+.++.. +.++.++.||+++.++++++++
T Consensus 311 ~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~~~~~~~ 384 (582)
T PRK05855 311 GPFSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAA------GAVAHAYRVDVSDADAMEAFAE 384 (582)
T ss_pred ccCCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEEcCCCCHHHHHHHHH
Confidence 3578899999999999999999999999999999999998888887777653 5578999999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCCcc
Q psy13409 92 EILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~~~ 168 (330)
++.+.++++|++|||||..... .+.+.++++.++++|+.|++++++.++|.|.+++ +|+||++||.++..+.
T Consensus 385 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~----- 459 (582)
T PRK05855 385 WVRAEHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYAPS----- 459 (582)
T ss_pred HHHHhcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccCC-----
Confidence 9999999999999999986532 5778899999999999999999999999998876 4899999999887664
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
++...|++||+|+++++++++.|++
T Consensus 460 ---------~~~~~Y~~sKaa~~~~~~~l~~e~~---------------------------------------------- 484 (582)
T PRK05855 460 ---------RSLPAYATSKAAVLMLSECLRAELA---------------------------------------------- 484 (582)
T ss_pred ---------CCCcHHHHHHHHHHHHHHHHHHHhc----------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCc---hhhH---HHHHHhhhhhccChHHHHHHHHHhhcccc
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSII---PGTA---WLYQRVGGLFIKSPLQGAQTTLYCALDKK 314 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~e~a~~~~~l~~~~~ 314 (330)
+ .||+|++|+||+|+|++.+...... ...+ .........+..+|+|+|+.+++++..+.
T Consensus 485 ----~---~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~va~~~~~~~~~~~ 549 (582)
T PRK05855 485 ----A---AGIGVTAICPGFVDTNIVATTRFAGADAEDEARRRGRADKLYQRRGYGPEKVAKAIVDAVKRNK 549 (582)
T ss_pred ----c---cCcEEEEEEeCCCcccchhccccCCcccchhhhHHhhhhhhccccCCCHHHHHHHHHHHHHcCC
Confidence 5 7999999999999999876542110 0000 00111111124689999999999997654
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-31 Score=246.86 Aligned_cols=231 Identities=20% Similarity=0.235 Sum_probs=188.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
++|+++||||+||||++++++|+++|++|++++|+.+.+++..+.+ +.++.++.+|++++++++.+++.+.
T Consensus 2 ~~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~D~~~~~~~~~~~~~~~ 72 (275)
T PRK08263 2 MEKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADLAEKY---------GDRLLPLALDVTDRAAVFAAVETAV 72 (275)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc---------cCCeeEEEccCCCHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999987766554322 3467889999999999999999999
Q ss_pred hcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccc
Q psy13409 95 DNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDIN 172 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~ 172 (330)
+.++.+|++|||||.... ..+.+.+++++.+++|+.+++.+++.+++.|.+++.++||++||..+..+.
T Consensus 73 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~~~--------- 143 (275)
T PRK08263 73 EHFGRLDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSGHIIQISSIGGISAF--------- 143 (275)
T ss_pred HHcCCCCEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcCCC---------
Confidence 989999999999998754 256788999999999999999999999999988777899999998887664
Q ss_pred cccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCC
Q psy13409 173 LEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPP 252 (330)
Q Consensus 173 ~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (330)
+....|+++|++++.++++++.+++
T Consensus 144 -----~~~~~Y~~sKaa~~~~~~~la~e~~-------------------------------------------------- 168 (275)
T PRK08263 144 -----PMSGIYHASKWALEGMSEALAQEVA-------------------------------------------------- 168 (275)
T ss_pred -----CCccHHHHHHHHHHHHHHHHHHHhh--------------------------------------------------
Confidence 6678899999999999999999998
Q ss_pred CCCCCceeEEEeeCcccccCcccccCCC-------chhhHHHHHHhhhhhc-cChHHHHHHHHHhhccccccccCceecc
Q psy13409 253 GANITNVNTYAVHPGVVDTELSRHFDSI-------IPGTAWLYQRVGGLFI-KSPLQGAQTTLYCALDKKCERETGLYYA 324 (330)
Q Consensus 253 ~~~~~~i~v~~v~pG~v~t~~~~~~~~~-------~~~~~~~~~~~~~~~~-~~~~e~a~~~~~l~~~~~~~~~~G~~~~ 324 (330)
. .||+|++|+||+++|++....... ...............+ .+|+|+|+.++++++.+. ..++++.
T Consensus 169 ~---~gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~dva~~~~~l~~~~~---~~~~~~~ 242 (275)
T PRK08263 169 E---FGIKVTLVEPGGYSTDWAGTSAKRATPLDAYDTLREELAEQWSERSVDGDPEAAAEALLKLVDAEN---PPLRLFL 242 (275)
T ss_pred h---hCcEEEEEecCCccCCccccccccCCCchhhhhHHHHHHHHHHhccCCCCHHHHHHHHHHHHcCCC---CCeEEEe
Confidence 5 799999999999999987422110 0111112222233335 899999999999997643 2445543
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=242.07 Aligned_cols=226 Identities=27% Similarity=0.273 Sum_probs=190.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
++|+++||||+++||++++++|+++|++|++++|+.++.+++.+.+++ .+.++.++.+|+++++++.++++.+.
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~------~~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRS------TGVKAAAYSIDLSNPEAIAPGIAELL 78 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh------CCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 468999999999999999999999999999999998887777666654 25678899999999999999999999
Q ss_pred hcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccc
Q psy13409 95 DNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDIN 172 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~ 172 (330)
+.++++|++|||+|..... .+.+.++++.++++|+.+++.+++.+++.|.+++.++||++||..+..+.
T Consensus 79 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~--------- 149 (241)
T PRK07454 79 EQFGCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGGGLIINVSSIAARNAF--------- 149 (241)
T ss_pred HHcCCCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCcCC---------
Confidence 9999999999999976532 56678899999999999999999999999988777999999998776553
Q ss_pred cccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCC
Q psy13409 173 LEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPP 252 (330)
Q Consensus 173 ~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (330)
+.+..|+++|++++.++++++.+++
T Consensus 150 -----~~~~~Y~~sK~~~~~~~~~~a~e~~-------------------------------------------------- 174 (241)
T PRK07454 150 -----PQWGAYCVSKAALAAFTKCLAEEER-------------------------------------------------- 174 (241)
T ss_pred -----CCccHHHHHHHHHHHHHHHHHHHhh--------------------------------------------------
Confidence 5678899999999999999999998
Q ss_pred CCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCce
Q psy13409 253 GANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGL 321 (330)
Q Consensus 253 ~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~ 321 (330)
+ .||++++|.||+++|++......... ....+..+|+|+|+.++++++.+...++.+.
T Consensus 175 ~---~gi~v~~i~pg~i~t~~~~~~~~~~~--------~~~~~~~~~~~va~~~~~l~~~~~~~~~~~~ 232 (241)
T PRK07454 175 S---HGIRVCTITLGAVNTPLWDTETVQAD--------FDRSAMLSPEQVAQTILHLAQLPPSAVIEDL 232 (241)
T ss_pred h---hCCEEEEEecCcccCCcccccccccc--------cccccCCCHHHHHHHHHHHHcCCccceeeeE
Confidence 5 79999999999999998653211100 1112267999999999999987754444333
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-31 Score=242.50 Aligned_cols=232 Identities=27% Similarity=0.322 Sum_probs=196.2
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCC--CHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLS--SLKSVRKCA 90 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls--~~~si~~l~ 90 (330)
.+++|+++||||+++||.+++++|++.|++|++++|+.+.+++..+++++. ...++.++.+|++ +++++..++
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~~d~~~~~~~~~~~~~ 83 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAA-----GGPQPAIIPLDLLTATPQNYQQLA 83 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhc-----CCCCceEEEecccCCCHHHHHHHH
Confidence 579999999999999999999999999999999999998887777776543 2345667777776 788999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCC---CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCc
Q psy13409 91 QEILDNESAIHLLINNAGVMMC---PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~---~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~ 167 (330)
+.+.+.++++|++|||||...+ ..+.+.+.+++.+++|+.+++.+++.+++.|.+.+.++||++||..+..+.
T Consensus 84 ~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss~~~~~~~---- 159 (247)
T PRK08945 84 DTIEEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSSSVGRQGR---- 159 (247)
T ss_pred HHHHHHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEccHhhcCCC----
Confidence 9999999999999999997543 356778899999999999999999999999988888999999998877664
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
+.+..|++||++++.+++.++.++.
T Consensus 160 ----------~~~~~Y~~sK~a~~~~~~~~~~~~~--------------------------------------------- 184 (247)
T PRK08945 160 ----------ANWGAYAVSKFATEGMMQVLADEYQ--------------------------------------------- 184 (247)
T ss_pred ----------CCCcccHHHHHHHHHHHHHHHHHhc---------------------------------------------
Confidence 5677899999999999999999987
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
. .+|++++|+||+++|++......... .. .+.+|+|+++.++|++++ .+++++|+++....
T Consensus 185 -----~---~~i~~~~v~pg~v~t~~~~~~~~~~~--------~~--~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~ 245 (247)
T PRK08945 185 -----G---TNLRVNCINPGGTRTAMRASAFPGED--------PQ--KLKTPEDIMPLYLYLMGD-DSRRKNGQSFDAQP 245 (247)
T ss_pred -----c---cCEEEEEEecCCccCcchhhhcCccc--------cc--CCCCHHHHHHHHHHHhCc-cccccCCeEEeCCC
Confidence 5 79999999999999997543322111 11 268999999999999865 55699999987653
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=247.15 Aligned_cols=230 Identities=23% Similarity=0.291 Sum_probs=187.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
|+++||||++|||++++++|+++|++|++++|+.+.+++..+++... ....+.++.+|++++++++++++++.+.
T Consensus 1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 75 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARAL-----GGTVPEHRALDISDYDAVAAFAADIHAA 75 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-----CCCcceEEEeeCCCHHHHHHHHHHHHHh
Confidence 57999999999999999999999999999999988887777776543 1234566899999999999999999999
Q ss_pred CCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCCccccccc
Q psy13409 97 ESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSMHFEDINL 173 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~~~~~~~~ 173 (330)
++++|++|||+|.... ..+.+.++++..+++|+.+++.+++.++|.|.+++ .++||++||..+..+.
T Consensus 76 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~~~---------- 145 (272)
T PRK07832 76 HGSMDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAGLVAL---------- 145 (272)
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccccccCCC----------
Confidence 9999999999997643 36788999999999999999999999999997653 5899999998776553
Q ss_pred ccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCC
Q psy13409 174 EKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPG 253 (330)
Q Consensus 174 ~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (330)
+....|+++|+++++|+++++.|+. .
T Consensus 146 ----~~~~~Y~~sK~a~~~~~~~l~~e~~--------------------------------------------------~ 171 (272)
T PRK07832 146 ----PWHAAYSASKFGLRGLSEVLRFDLA--------------------------------------------------R 171 (272)
T ss_pred ----CCCcchHHHHHHHHHHHHHHHHHhh--------------------------------------------------h
Confidence 6678899999999999999999998 5
Q ss_pred CCCCceeEEEeeCcccccCcccccCC-----CchhhH-HHHHHhhhhhccChHHHHHHHHHhhccccccccCcee
Q psy13409 254 ANITNVNTYAVHPGVVDTELSRHFDS-----IIPGTA-WLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLY 322 (330)
Q Consensus 254 ~~~~~i~v~~v~pG~v~t~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~ 322 (330)
.+|+|++|+||+|+|++.+.... ..+... +.....++ ..+|+|+|+.+++++..+ .+++|..
T Consensus 172 ---~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vA~~~~~~~~~~--~~~~~~~ 239 (272)
T PRK07832 172 ---HGIGVSVVVPGAVKTPLVNTVEIAGVDREDPRVQKWVDRFRGH--AVTPEKAAEKILAGVEKN--RYLVYTS 239 (272)
T ss_pred ---cCcEEEEEecCcccCcchhcccccccCcchhhHHHHHHhcccC--CCCHHHHHHHHHHHHhcC--CeEEecC
Confidence 79999999999999998765321 111111 11112222 689999999999999654 3555553
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=241.07 Aligned_cols=235 Identities=23% Similarity=0.266 Sum_probs=194.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEec-ChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACR-SLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R-~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
|++|||||++|||++++++|+++|++|+++.| +.+..++..+++.. .+.++.++.+|++++++++++++.+.+
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGA------LGFDFRVVEGDVSSFESCKAAVAKVEA 74 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh------hCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 68999999999999999999999999999988 66555555554433 246789999999999999999999999
Q ss_pred cCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccccc
Q psy13409 96 NESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINL 173 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~ 173 (330)
.++.+|++|||+|...+ ..+.+.+++++.+++|+.+++.+++.+++.|.+.+.++||++||..+..+.
T Consensus 75 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~iss~~~~~~~---------- 144 (242)
T TIGR01829 75 ELGPIDVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERGWGRIINISSVNGQKGQ---------- 144 (242)
T ss_pred HcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcCCC----------
Confidence 89999999999997653 256788899999999999999999999999988777899999998877664
Q ss_pred ccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCC
Q psy13409 174 EKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPG 253 (330)
Q Consensus 174 ~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (330)
.++..|+++|++++.+++++++++. .
T Consensus 145 ----~~~~~y~~sk~a~~~~~~~la~~~~--------------------------------------------------~ 170 (242)
T TIGR01829 145 ----FGQTNYSAAKAGMIGFTKALAQEGA--------------------------------------------------T 170 (242)
T ss_pred ----CCcchhHHHHHHHHHHHHHHHHHhh--------------------------------------------------h
Confidence 5678899999999999999999987 5
Q ss_pred CCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 254 ANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 254 ~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
.||++++|+||+++|++....... ............++.+|+|+|+.+.||+.++ +.+++|+.|....
T Consensus 171 ---~~i~v~~i~pg~~~t~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~-~~~~~G~~~~~~g 238 (242)
T TIGR01829 171 ---KGVTVNTISPGYIATDMVMAMRED--VLNSIVAQIPVGRLGRPEEIAAAVAFLASEE-AGYITGATLSING 238 (242)
T ss_pred ---hCeEEEEEeeCCCcCccccccchH--HHHHHHhcCCCCCCcCHHHHHHHHHHHcCch-hcCccCCEEEecC
Confidence 799999999999999987543321 1111111112223789999999999998664 5689999987654
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=246.09 Aligned_cols=216 Identities=19% Similarity=0.184 Sum_probs=181.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCC-CEEEEEecChhH-HHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRG-ARVIMACRSLEK-AETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G-~~Vil~~R~~~~-l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
++|+++||||++|||+++|++|+++| ++|++++|+.+. +++..++++.. ...++.++.+|++|++++++++++
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~-----~~~~v~~~~~D~~~~~~~~~~~~~ 81 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAA-----GASSVEVIDFDALDTDSHPKVIDA 81 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhc-----CCCceEEEEecCCChHHHHHHHHH
Confidence 68999999999999999999999995 899999999876 77777777653 234789999999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCCCC--CCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 93 ILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~~--~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
+.+ .+++|++|||+|...+.. ..+.++..+++++|+.+++.+++.++|.|.+++.++||++||..+..+.
T Consensus 82 ~~~-~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~~~iv~isS~~g~~~~------- 153 (253)
T PRK07904 82 AFA-GGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGFGQIIAMSSVAGERVR------- 153 (253)
T ss_pred HHh-cCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCCceEEEEechhhcCCC-------
Confidence 876 489999999999865431 1234455678999999999999999999998888999999998875553
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
+....|++||+++.+|+++++.|+.
T Consensus 154 -------~~~~~Y~~sKaa~~~~~~~l~~el~------------------------------------------------ 178 (253)
T PRK07904 154 -------RSNFVYGSTKAGLDGFYLGLGEALR------------------------------------------------ 178 (253)
T ss_pred -------CCCcchHHHHHHHHHHHHHHHHHHh------------------------------------------------
Confidence 4567899999999999999999998
Q ss_pred CCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhcccccc
Q psy13409 251 PPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCE 316 (330)
Q Consensus 251 ~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~ 316 (330)
. .||+|++|+||+|+|++....... ....+|+|+|+.++..+.++...
T Consensus 179 --~---~~i~v~~v~Pg~v~t~~~~~~~~~-------------~~~~~~~~~A~~i~~~~~~~~~~ 226 (253)
T PRK07904 179 --E---YGVRVLVVRPGQVRTRMSAHAKEA-------------PLTVDKEDVAKLAVTAVAKGKEL 226 (253)
T ss_pred --h---cCCEEEEEeeCceecchhccCCCC-------------CCCCCHHHHHHHHHHHHHcCCCE
Confidence 5 799999999999999987654321 01468999999999999776543
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-31 Score=244.37 Aligned_cols=213 Identities=20% Similarity=0.277 Sum_probs=182.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
+|+++||||++|||++++++|+++|++|++++|+.+.+++..+++.. ..++.++.+|++++++++++++++.+
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~i~~~~~~~~~ 74 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPK-------AARVSVYAADVRDADALAAAAADFIA 74 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccc-------CCeeEEEEcCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999998877665554422 12789999999999999999999999
Q ss_pred cCCCeeEEEEcCCCCCCC---CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccc
Q psy13409 96 NESAIHLLINNAGVMMCP---RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDIN 172 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~~---~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~ 172 (330)
.++.+|++|||+|..... .+.+.++++.++++|+.+++.+++.++|.|.+++.++||++||.++..+.
T Consensus 75 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~~~~iv~isS~~~~~~~--------- 145 (257)
T PRK07024 75 AHGLPDVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAARRGTLVGIASVAGVRGL--------- 145 (257)
T ss_pred hCCCCCEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcCCCEEEEEechhhcCCC---------
Confidence 999999999999976432 23677899999999999999999999999988888999999999887774
Q ss_pred cccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCC
Q psy13409 173 LEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPP 252 (330)
Q Consensus 173 ~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (330)
+....|++||++++.++++++.|++
T Consensus 146 -----~~~~~Y~asK~a~~~~~~~l~~e~~-------------------------------------------------- 170 (257)
T PRK07024 146 -----PGAGAYSASKAAAIKYLESLRVELR-------------------------------------------------- 170 (257)
T ss_pred -----CCCcchHHHHHHHHHHHHHHHHHhh--------------------------------------------------
Confidence 6677899999999999999999998
Q ss_pred CCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhcccc
Q psy13409 253 GANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKK 314 (330)
Q Consensus 253 ~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~ 314 (330)
. .||+|++|+||+|+|++....... .....+|+++|+.++.++.++.
T Consensus 171 ~---~gi~v~~v~Pg~v~t~~~~~~~~~------------~~~~~~~~~~a~~~~~~l~~~~ 217 (257)
T PRK07024 171 P---AGVRVVTIAPGYIRTPMTAHNPYP------------MPFLMDADRFAARAARAIARGR 217 (257)
T ss_pred c---cCcEEEEEecCCCcCchhhcCCCC------------CCCccCHHHHHHHHHHHHhCCC
Confidence 5 799999999999999976542211 0114689999999999986643
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-31 Score=245.65 Aligned_cols=223 Identities=23% Similarity=0.254 Sum_probs=183.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.+|+++||||+||||++++++|+++|++|++++|+.++++.+.+. .+.++.++.+|+++++++.++++.+.
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~---------~~~~~~~~~~D~~d~~~~~~~~~~~~ 73 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEAL---------HPDRALARLLDVTDFDAIDAVVADAE 73 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhh---------cCCCeeEEEccCCCHHHHHHHHHHHH
Confidence 578999999999999999999999999999999998766544322 24578899999999999999999999
Q ss_pred hcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccc
Q psy13409 95 DNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDIN 172 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~ 172 (330)
+.++++|++|||||.... ..+.+.+++++++++|+.+++++++.++|.|.+++.++||++||.++..+.
T Consensus 74 ~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS~~~~~~~--------- 144 (277)
T PRK06180 74 ATFGPIDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITSMGGLITM--------- 144 (277)
T ss_pred HHhCCCCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEecccccCCC---------
Confidence 999999999999998643 367788999999999999999999999999988877899999999887764
Q ss_pred cccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCC
Q psy13409 173 LEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPP 252 (330)
Q Consensus 173 ~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (330)
++...|+++|++++.++++++.|++
T Consensus 145 -----~~~~~Y~~sK~a~~~~~~~la~e~~-------------------------------------------------- 169 (277)
T PRK06180 145 -----PGIGYYCGSKFALEGISESLAKEVA-------------------------------------------------- 169 (277)
T ss_pred -----CCcchhHHHHHHHHHHHHHHHHHhh--------------------------------------------------
Confidence 6788999999999999999999998
Q ss_pred CCCCCceeEEEeeCcccccCcccccCC-----CchhhHHH---H---HHhhhhhccChHHHHHHHHHhhccc
Q psy13409 253 GANITNVNTYAVHPGVVDTELSRHFDS-----IIPGTAWL---Y---QRVGGLFIKSPLQGAQTTLYCALDK 313 (330)
Q Consensus 253 ~~~~~~i~v~~v~pG~v~t~~~~~~~~-----~~~~~~~~---~---~~~~~~~~~~~~e~a~~~~~l~~~~ 313 (330)
. .||++++|+||+|+|++...... ........ . ......++.+|+|+|+++++++..+
T Consensus 170 ~---~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~~l~~~ 238 (277)
T PRK06180 170 P---FGIHVTAVEPGSFRTDWAGRSMVRTPRSIADYDALFGPIRQAREAKSGKQPGDPAKAAQAILAAVESD 238 (277)
T ss_pred h---hCcEEEEEecCCcccCccccccccCCCCcHhHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHcCC
Confidence 5 79999999999999987543211 11111100 0 1112223679999999999998664
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-31 Score=244.96 Aligned_cols=230 Identities=25% Similarity=0.263 Sum_probs=188.2
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
++++|++|||||+||||++++++|+++|++|++++|+.+.+++..+++.. .+.++.++.+|++|.++++++++.
T Consensus 3 ~~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~------~~~~~~~~~~D~~d~~~~~~~~~~ 76 (287)
T PRK06194 3 DFAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRA------QGAEVLGVRTDVSDAAQVEALADA 76 (287)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHh------cCCeEEEEECCCCCHHHHHHHHHH
Confidence 57889999999999999999999999999999999998887777776654 255788999999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCC------CeEEEEcCCCcccCCC
Q psy13409 93 ILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAP------ARIINLSSLAHTWGDG 164 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~------g~IV~iSS~~~~~~~~ 164 (330)
+.+.++++|++|||||..... .+.+.++++..+++|+.+++.+++.++|.|.++.. |+||++||.++..+.
T Consensus 77 ~~~~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~- 155 (287)
T PRK06194 77 ALERFGAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLLAP- 155 (287)
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCC-
Confidence 999999999999999987543 46788999999999999999999999999987754 799999999887664
Q ss_pred CCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccc
Q psy13409 165 SMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYC 244 (330)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
+..+.|+++|++++.++++++.+++..
T Consensus 156 -------------~~~~~Y~~sK~a~~~~~~~l~~e~~~~---------------------------------------- 182 (287)
T PRK06194 156 -------------PAMGIYNVSKHAVVSLTETLYQDLSLV---------------------------------------- 182 (287)
T ss_pred -------------CCCcchHHHHHHHHHHHHHHHHHHhhc----------------------------------------
Confidence 567889999999999999999998721
Q ss_pred cccccCCCCCCCCceeEEEeeCcccccCcccccCCCc--------hhhHHH-----HHHhhhhhccChHHHHHHHHHhhc
Q psy13409 245 KNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSII--------PGTAWL-----YQRVGGLFIKSPLQGAQTTLYCAL 311 (330)
Q Consensus 245 ~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~--------~~~~~~-----~~~~~~~~~~~~~e~a~~~~~l~~ 311 (330)
. .+||+++|+||+|+|++.......+ ...... ..........+++|+|+.++.++.
T Consensus 183 --------~---~~irv~~v~pg~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dva~~i~~~~~ 251 (287)
T PRK06194 183 --------T---DQVGASVLCPYFVPTGIWQSERNRPADLANTAPPTRSQLIAQAMSQKAVGSGKVTAEEVAQLVFDAIR 251 (287)
T ss_pred --------C---CCeEEEEEEeCcccCccccccccCchhcccCccccchhhHHHHHHHhhhhccCCCHHHHHHHHHHHHH
Confidence 2 6799999999999999876542111 000000 011111113699999999999875
Q ss_pred cc
Q psy13409 312 DK 313 (330)
Q Consensus 312 ~~ 313 (330)
.+
T Consensus 252 ~~ 253 (287)
T PRK06194 252 AG 253 (287)
T ss_pred cC
Confidence 43
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-31 Score=241.18 Aligned_cols=236 Identities=28% Similarity=0.356 Sum_probs=191.5
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEE-ecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMA-CRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~-~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.++++++++||||+||||++++++|+++|+.|++. .|+.+.+++..+.+.. .+.++.++.+|++|++++.+++
T Consensus 2 ~~~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~------~~~~~~~~~~D~~d~~~i~~~~ 75 (254)
T PRK12746 2 KNLDGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIES------NGGKAFLIEADLNSIDGVKKLV 75 (254)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh------cCCcEEEEEcCcCCHHHHHHHH
Confidence 35789999999999999999999999999998774 7887777666666543 2457889999999999999999
Q ss_pred HHHHhcC------CCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccC
Q psy13409 91 QEILDNE------SAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWG 162 (330)
Q Consensus 91 ~~i~~~~------g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~ 162 (330)
+++.+.+ +++|++|||||..... .+.+.+.++..+++|+.+++++++.+++.|.+ .+++|++||..+..+
T Consensus 76 ~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~~~~v~~sS~~~~~~ 153 (254)
T PRK12746 76 EQLKNELQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRA--EGRVINISSAEVRLG 153 (254)
T ss_pred HHHHHHhccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhc--CCEEEEECCHHhcCC
Confidence 9988766 4799999999976542 56688889999999999999999999998854 379999999877655
Q ss_pred CCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcc
Q psy13409 163 DGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNH 242 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (330)
. +++..|+++|++++.+++++++++.
T Consensus 154 ~--------------~~~~~Y~~sK~a~~~~~~~~~~~~~---------------------------------------- 179 (254)
T PRK12746 154 F--------------TGSIAYGLSKGALNTMTLPLAKHLG---------------------------------------- 179 (254)
T ss_pred C--------------CCCcchHhhHHHHHHHHHHHHHHHh----------------------------------------
Confidence 3 6778899999999999999999988
Q ss_pred cccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCc
Q psy13409 243 YCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETG 320 (330)
Q Consensus 243 ~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G 320 (330)
. .+++|++|+||+++|++.+............. ...++ ..+++|+|+.+++++++ ...+++|
T Consensus 180 ----------~---~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~dva~~~~~l~~~-~~~~~~g 243 (254)
T PRK12746 180 ----------E---RGITVNTIMPGYTKTDINAKLLDDPEIRNFATNSSVFGR--IGQVEDIADAVAFLASS-DSRWVTG 243 (254)
T ss_pred ----------h---cCcEEEEEEECCccCcchhhhccChhHHHHHHhcCCcCC--CCCHHHHHHHHHHHcCc-ccCCcCC
Confidence 5 79999999999999998765433222111111 12233 77999999999999865 4567899
Q ss_pred eeccc
Q psy13409 321 LYYAK 325 (330)
Q Consensus 321 ~~~~~ 325 (330)
+.|.-
T Consensus 244 ~~~~i 248 (254)
T PRK12746 244 QIIDV 248 (254)
T ss_pred CEEEe
Confidence 87754
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-31 Score=239.89 Aligned_cols=234 Identities=23% Similarity=0.281 Sum_probs=190.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChh-HHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLE-KAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~-~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
|+++||||+++||+++++.|+++|++|++++|+.. ...+....+.. .+.++.++.+|+++.++++++++.+.+
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~------~~~~~~~~~~D~~~~~~v~~~~~~~~~ 76 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGYRVIATYFSGNDCAKDWFEEYGF------TEDQVRLKELDVTDTEECAEALAEIEE 76 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhhc------cCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999854 12222222211 245789999999999999999999999
Q ss_pred cCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccccc
Q psy13409 96 NESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINL 173 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~ 173 (330)
.++++|++|||+|.... ..+.+.++++..+++|+.+++.+++.+++.|.+++.++||++||..+..+.
T Consensus 77 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~~~---------- 146 (245)
T PRK12824 77 EEGPVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQGYGRIINISSVNGLKGQ---------- 146 (245)
T ss_pred HcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEECChhhccCC----------
Confidence 99999999999998643 356788999999999999999999999999988778999999998876654
Q ss_pred ccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCC
Q psy13409 174 EKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPG 253 (330)
Q Consensus 174 ~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (330)
++...|+++|+|+++++++++.++. +
T Consensus 147 ----~~~~~Y~~sK~a~~~~~~~l~~~~~--------------------------------------------------~ 172 (245)
T PRK12824 147 ----FGQTNYSAAKAGMIGFTKALASEGA--------------------------------------------------R 172 (245)
T ss_pred ----CCChHHHHHHHHHHHHHHHHHHHHH--------------------------------------------------H
Confidence 5678999999999999999999987 5
Q ss_pred CCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 254 ANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 254 ~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
.||++++|+||+++|++.+.... ................+++|+|+.+++|+.+ .+.+++|+.+.-.
T Consensus 173 ---~~i~v~~v~pg~~~t~~~~~~~~--~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~-~~~~~~G~~~~~~ 239 (245)
T PRK12824 173 ---YGITVNCIAPGYIATPMVEQMGP--EVLQSIVNQIPMKRLGTPEEIAAAVAFLVSE-AAGFITGETISIN 239 (245)
T ss_pred ---hCeEEEEEEEcccCCcchhhcCH--HHHHHHHhcCCCCCCCCHHHHHHHHHHHcCc-cccCccCcEEEEC
Confidence 79999999999999998765432 1111122211222377999999999999855 4568999988644
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-31 Score=239.25 Aligned_cols=237 Identities=24% Similarity=0.247 Sum_probs=190.4
Q ss_pred ccCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHH
Q psy13409 8 CTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVR 87 (330)
Q Consensus 8 ~~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~ 87 (330)
|.+++++++++++||||+++||+++++.|+++|++|++++|+.+++++..+.. ...++.+|++++++++
T Consensus 1 ~~~~~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~-----------~~~~~~~D~~~~~~v~ 69 (245)
T PRK07060 1 MNMAFDFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGET-----------GCEPLRLDVGDDAAIR 69 (245)
T ss_pred CCcccccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----------CCeEEEecCCCHHHHH
Confidence 34566789999999999999999999999999999999999987665443321 2457889999999888
Q ss_pred HHHHHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCC
Q psy13409 88 KCAQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDG 164 (330)
Q Consensus 88 ~l~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~ 164 (330)
++++. .+++|++|||+|..... .+.+.+++++.+++|+.+++.+++++++.+.+++ .++||++||..+..+.
T Consensus 70 ~~~~~----~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~- 144 (245)
T PRK07060 70 AALAA----AGAFDGLVNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAALVGL- 144 (245)
T ss_pred HHHHH----hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcCCC-
Confidence 87765 46899999999986532 4577889999999999999999999999987654 4899999998876664
Q ss_pred CCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccc
Q psy13409 165 SMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYC 244 (330)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
+....|+++|++++.+++++++++.
T Consensus 145 -------------~~~~~y~~sK~a~~~~~~~~a~~~~------------------------------------------ 169 (245)
T PRK07060 145 -------------PDHLAYCASKAALDAITRVLCVELG------------------------------------------ 169 (245)
T ss_pred -------------CCCcHhHHHHHHHHHHHHHHHHHHh------------------------------------------
Confidence 5678899999999999999999997
Q ss_pred cccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecc
Q psy13409 245 KNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYA 324 (330)
Q Consensus 245 ~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~ 324 (330)
+ .||++++|+||++.|++.+...................++.+++|+|+.+++++++ .+.+++|++|.
T Consensus 170 --------~---~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~l~~~-~~~~~~G~~~~ 237 (245)
T PRK07060 170 --------P---HGIRVNSVNPTVTLTPMAAEAWSDPQKSGPMLAAIPLGRFAEVDDVAAPILFLLSD-AASMVSGVSLP 237 (245)
T ss_pred --------h---hCeEEEEEeeCCCCCchhhhhccCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCc-ccCCccCcEEe
Confidence 5 79999999999999998654322222222222222333478999999999999865 45789999987
Q ss_pred cCC
Q psy13409 325 KAD 327 (330)
Q Consensus 325 ~~~ 327 (330)
..+
T Consensus 238 ~~~ 240 (245)
T PRK07060 238 VDG 240 (245)
T ss_pred ECC
Confidence 654
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-31 Score=238.06 Aligned_cols=226 Identities=27% Similarity=0.358 Sum_probs=192.0
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
.++++++++||||+++||.+++++|+++|++|++++|+.+++++..+++.. .+.++.++.+|++++++++++++
T Consensus 3 ~~~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~------~~~~~~~~~~D~~~~~~~~~~~~ 76 (239)
T PRK07666 3 QSLQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEA------YGVKVVIATADVSDYEEVTAAIE 76 (239)
T ss_pred ccCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH------hCCeEEEEECCCCCHHHHHHHHH
Confidence 457899999999999999999999999999999999998887777766643 25688999999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 92 EILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
++.+.++++|++|||+|..... .+.+.+++++.+++|+.+++.+++.+.+.+.+++.+++|++||..+..+.
T Consensus 77 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~~------ 150 (239)
T PRK07666 77 QLKNELGSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTAGQKGA------ 150 (239)
T ss_pred HHHHHcCCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchhhccCC------
Confidence 9999999999999999976432 46678899999999999999999999999988878999999998877764
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
+....|+.+|+++..++++++.|++
T Consensus 151 --------~~~~~Y~~sK~a~~~~~~~~a~e~~----------------------------------------------- 175 (239)
T PRK07666 151 --------AVTSAYSASKFGVLGLTESLMQEVR----------------------------------------------- 175 (239)
T ss_pred --------CCCcchHHHHHHHHHHHHHHHHHhh-----------------------------------------------
Confidence 5677899999999999999999998
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccC
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERET 319 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~ 319 (330)
+ .||++++|+||+++|++......... ....+.+++|+|+.++.+++.+...+++
T Consensus 176 ---~---~gi~v~~v~pg~v~t~~~~~~~~~~~---------~~~~~~~~~~~a~~~~~~l~~~~~~~~~ 230 (239)
T PRK07666 176 ---K---HNIRVTALTPSTVATDMAVDLGLTDG---------NPDKVMQPEDLAEFIVAQLKLNKRTFIK 230 (239)
T ss_pred ---c---cCcEEEEEecCcccCcchhhcccccc---------CCCCCCCHHHHHHHHHHHHhCCCceEEE
Confidence 5 79999999999999998754321110 0112678999999999999776433333
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-31 Score=238.06 Aligned_cols=238 Identities=32% Similarity=0.417 Sum_probs=199.9
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEE-ecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMA-CRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~-~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
++++|++|||||+++||.++++.|+++|++|+++ +|+.+..++..+.+.. .+.++.++.+|+++++++.++++
T Consensus 2 ~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~------~~~~~~~~~~D~~~~~~~~~~~~ 75 (247)
T PRK05565 2 KLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKE------EGGDAIAVKADVSSEEDVENLVE 75 (247)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh------cCCeEEEEECCCCCHHHHHHHHH
Confidence 5789999999999999999999999999999999 9998877777666654 25678999999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 92 EILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
.+.+.++.+|++||++|.... ..+.+.+++++.+++|+.+++.+++.+++.+.+++.+++|++||..+..+.
T Consensus 76 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~~------ 149 (247)
T PRK05565 76 QIVEKFGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISSIWGLIGA------ 149 (247)
T ss_pred HHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCHhhccCC------
Confidence 998988999999999998743 246788999999999999999999999999988878999999998887774
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
+....|+.+|++++.++++++.++.
T Consensus 150 --------~~~~~y~~sK~a~~~~~~~~~~~~~----------------------------------------------- 174 (247)
T PRK05565 150 --------SCEVLYSASKGAVNAFTKALAKELA----------------------------------------------- 174 (247)
T ss_pred --------CCccHHHHHHHHHHHHHHHHHHHHH-----------------------------------------------
Confidence 5677899999999999999999987
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
. .||++++|+||+++|++.+...... ... ........++.+++|+|+.++++++. ....++|+++...
T Consensus 175 ---~---~gi~~~~v~pg~v~t~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~va~~~~~l~~~-~~~~~~g~~~~~~ 242 (247)
T PRK05565 175 ---P---SGIRVNAVAPGAIDTEMWSSFSEED-KEG-LAEEIPLGRLGKPEEIAKVVLFLASD-DASYITGQIITVD 242 (247)
T ss_pred ---H---cCeEEEEEEECCccCccccccChHH-HHH-HHhcCCCCCCCCHHHHHHHHHHHcCC-ccCCccCcEEEec
Confidence 5 7999999999999999876654321 111 11112223377999999999999966 4568999998654
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-30 Score=238.34 Aligned_cols=232 Identities=22% Similarity=0.193 Sum_probs=185.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecC-hhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRS-LEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~-~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
...+|++|||||++|||++++++|+++|++|+++.+. .+.++++.+.+.. .+.++.++.+|++|.++++++++
T Consensus 6 ~~~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Dl~d~~~~~~~~~ 79 (258)
T PRK09134 6 MAAPRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRA------LGRRAVALQADLADEAEVRALVA 79 (258)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh------cCCeEEEEEcCCCCHHHHHHHHH
Confidence 4578999999999999999999999999999887664 4555556555543 25678899999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 92 EILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
++.+.++++|++|||||...+ ..+.+.+++++++++|+.+++.+++.+.+.+.+...++||+++|..+..+.
T Consensus 80 ~~~~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~~~~~~------ 153 (258)
T PRK09134 80 RASAALGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQRVWNLN------ 153 (258)
T ss_pred HHHHHcCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchhhcCCC------
Confidence 999888999999999997643 356788999999999999999999999999987767899999986554332
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
+.+..|++||+++++++++++.++.
T Consensus 154 --------p~~~~Y~~sK~a~~~~~~~la~~~~----------------------------------------------- 178 (258)
T PRK09134 154 --------PDFLSYTLSKAALWTATRTLAQALA----------------------------------------------- 178 (258)
T ss_pred --------CCchHHHHHHHHHHHHHHHHHHHhc-----------------------------------------------
Confidence 4567899999999999999999987
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHH-HHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWL-YQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
++|+|++|+||+|.|+..... ....... ..+.++ ..+|+|+|++++++++. .+++|+.+...
T Consensus 179 -------~~i~v~~i~PG~v~t~~~~~~---~~~~~~~~~~~~~~--~~~~~d~a~~~~~~~~~---~~~~g~~~~i~ 241 (258)
T PRK09134 179 -------PRIRVNAIGPGPTLPSGRQSP---EDFARQHAATPLGR--GSTPEEIAAAVRYLLDA---PSVTGQMIAVD 241 (258)
T ss_pred -------CCcEEEEeecccccCCcccCh---HHHHHHHhcCCCCC--CcCHHHHHHHHHHHhcC---CCcCCCEEEEC
Confidence 359999999999988643211 1111111 112233 68999999999999964 36788876554
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-31 Score=245.68 Aligned_cols=221 Identities=23% Similarity=0.274 Sum_probs=179.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.+|+++||||+||||++++++|+++|++|++++|+.+.++++. . ..+.++.+|++|.++++++++.+.
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~----~--------~~~~~~~~Dl~d~~~~~~~~~~~~ 70 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALE----A--------EGLEAFQLDYAEPESIAALVAQVL 70 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH----H--------CCceEEEccCCCHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999987665432 1 236788999999999999999987
Q ss_pred hcC-CCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccc
Q psy13409 95 DNE-SAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDI 171 (330)
Q Consensus 95 ~~~-g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~ 171 (330)
+.+ +++|++|||||..... .+.+.++++..+++|+.|++.+++.++|.|.+++.|+||++||..+..+.
T Consensus 71 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~~-------- 142 (277)
T PRK05993 71 ELSGGRLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQGRIVQCSSILGLVPM-------- 142 (277)
T ss_pred HHcCCCccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCCCEEEEECChhhcCCC--------
Confidence 655 6899999999976543 56788999999999999999999999999998888999999998876663
Q ss_pred ccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCC
Q psy13409 172 NLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHP 251 (330)
Q Consensus 172 ~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (330)
+....|++||+++++|+++|+.|+.
T Consensus 143 ------~~~~~Y~asK~a~~~~~~~l~~el~------------------------------------------------- 167 (277)
T PRK05993 143 ------KYRGAYNASKFAIEGLSLTLRMELQ------------------------------------------------- 167 (277)
T ss_pred ------CccchHHHHHHHHHHHHHHHHHHhh-------------------------------------------------
Confidence 6678999999999999999999998
Q ss_pred CCCCCCceeEEEeeCcccccCcccccCCC---------chhhHHHH-------H-HhhhhhccChHHHHHHHHHhhcccc
Q psy13409 252 PGANITNVNTYAVHPGVVDTELSRHFDSI---------IPGTAWLY-------Q-RVGGLFIKSPLQGAQTTLYCALDKK 314 (330)
Q Consensus 252 ~~~~~~~i~v~~v~pG~v~t~~~~~~~~~---------~~~~~~~~-------~-~~~~~~~~~~~e~a~~~~~l~~~~~ 314 (330)
+ .||+|++|+||+|+|++....... ........ . ........+|+++|+.++..+..+.
T Consensus 168 -~---~gi~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~i~~a~~~~~ 243 (277)
T PRK05993 168 -G---SGIHVSLIEPGPIETRFRANALAAFKRWIDIENSVHRAAYQQQMARLEGGGSKSRFKLGPEAVYAVLLHALTAPR 243 (277)
T ss_pred -h---hCCEEEEEecCCccCchhhHHHHHHhhhhccccchhHHHHHHHHHHHHhhhhccccCCCHHHHHHHHHHHHcCCC
Confidence 6 799999999999999987543210 00000000 0 0111224689999999999986653
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-30 Score=236.07 Aligned_cols=237 Identities=24% Similarity=0.325 Sum_probs=192.7
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecC----hhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRS----LEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRK 88 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~----~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~ 88 (330)
++++++++||||+|+||++++++|+++|++|++++|. .+..++..+++.. .+.++.++.+|+++.+++++
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Dl~~~~~~~~ 76 (249)
T PRK12827 3 SLDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEA------AGGKALGLAFDVRDFAATRA 76 (249)
T ss_pred CcCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHh------cCCcEEEEEccCCCHHHHHH
Confidence 4678999999999999999999999999999997764 3334444444433 25678899999999999999
Q ss_pred HHHHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHH-HHHhhhCCCeEEEEcCCCcccCCCC
Q psy13409 89 CAQEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLL-PRIIKSAPARIINLSSLAHTWGDGS 165 (330)
Q Consensus 89 l~~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l-~~l~~~~~g~IV~iSS~~~~~~~~~ 165 (330)
+++++.+.++.+|++|||+|.... ..+.+.++++..+++|+.+++.+++.+. +.+.+++.+++|++||..+..+.
T Consensus 77 ~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~-- 154 (249)
T PRK12827 77 ALDAGVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASVAGVRGN-- 154 (249)
T ss_pred HHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCchhcCCC--
Confidence 999998888899999999998753 2567788999999999999999999999 66665666899999998887664
Q ss_pred CcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccc
Q psy13409 166 MHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCK 245 (330)
Q Consensus 166 ~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (330)
++...|+.+|++++.++++++.+++
T Consensus 155 ------------~~~~~y~~sK~a~~~~~~~l~~~~~------------------------------------------- 179 (249)
T PRK12827 155 ------------RGQVNYAASKAGLIGLTKTLANELA------------------------------------------- 179 (249)
T ss_pred ------------CCCchhHHHHHHHHHHHHHHHHHhh-------------------------------------------
Confidence 5678899999999999999999987
Q ss_pred ccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceeccc
Q psy13409 246 NVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAK 325 (330)
Q Consensus 246 ~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~ 325 (330)
+ .+|++++|+||+|+|++...... .++.....+.....+++|+|+.+++++.+ ...+++|+++..
T Consensus 180 -------~---~~i~~~~i~pg~v~t~~~~~~~~----~~~~~~~~~~~~~~~~~~va~~~~~l~~~-~~~~~~g~~~~~ 244 (249)
T PRK12827 180 -------P---RGITVNAVAPGAINTPMADNAAP----TEHLLNPVPVQRLGEPDEVAALVAFLVSD-AASYVTGQVIPV 244 (249)
T ss_pred -------h---hCcEEEEEEECCcCCCcccccch----HHHHHhhCCCcCCcCHHHHHHHHHHHcCc-ccCCccCcEEEe
Confidence 5 79999999999999997654321 12222222223367999999999999855 456899999876
Q ss_pred CC
Q psy13409 326 AD 327 (330)
Q Consensus 326 ~~ 327 (330)
.+
T Consensus 245 ~~ 246 (249)
T PRK12827 245 DG 246 (249)
T ss_pred CC
Confidence 54
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.8e-31 Score=239.38 Aligned_cols=234 Identities=23% Similarity=0.271 Sum_probs=190.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh-hHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL-EKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~-~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.|+++||||+++||.+++++|+++|++|++++|+. +..++..+.++. .+.++.++.+|++++++++++++++.
T Consensus 2 ~k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~------~~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (256)
T PRK12745 2 RPVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRA------LGVEVIFFPADVADLSAHEAMLDAAQ 75 (256)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHh------cCCceEEEEecCCCHHHHHHHHHHHH
Confidence 48999999999999999999999999999999874 344444444433 24578999999999999999999999
Q ss_pred hcCCCeeEEEEcCCCCCC----CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC------CCeEEEEcCCCcccCCC
Q psy13409 95 DNESAIHLLINNAGVMMC----PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA------PARIINLSSLAHTWGDG 164 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~----~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~------~g~IV~iSS~~~~~~~~ 164 (330)
+.++++|++|||||...+ ..+.+.++++..+++|+.+++.+++.+++.|.++. .++||++||..+..+.
T Consensus 76 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~- 154 (256)
T PRK12745 76 AAWGRIDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIMVS- 154 (256)
T ss_pred HhcCCCCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhccCC-
Confidence 999999999999997542 24667889999999999999999999999998754 3569999998887764
Q ss_pred CCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccc
Q psy13409 165 SMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYC 244 (330)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
+....|++||+++++++++++.++.
T Consensus 155 -------------~~~~~Y~~sK~a~~~~~~~l~~~~~------------------------------------------ 179 (256)
T PRK12745 155 -------------PNRGEYCISKAGLSMAAQLFAARLA------------------------------------------ 179 (256)
T ss_pred -------------CCCcccHHHHHHHHHHHHHHHHHHH------------------------------------------
Confidence 5677899999999999999999998
Q ss_pred cccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHH---HHHhhhhhccChHHHHHHHHHhhccccccccCce
Q psy13409 245 KNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWL---YQRVGGLFIKSPLQGAQTTLYCALDKKCERETGL 321 (330)
Q Consensus 245 ~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~ 321 (330)
+ .||+|++|+||+++|++........ .... ..++++ ..+|+|+|+++++++.. ...+++|+
T Consensus 180 --------~---~gi~v~~i~pg~v~t~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~d~a~~i~~l~~~-~~~~~~G~ 243 (256)
T PRK12745 180 --------E---EGIGVYEVRPGLIKTDMTAPVTAKY--DALIAKGLVPMPR--WGEPEDVARAVAALASG-DLPYSTGQ 243 (256)
T ss_pred --------H---hCCEEEEEecCCCcCccccccchhH--HhhhhhcCCCcCC--CcCHHHHHHHHHHHhCC-cccccCCC
Confidence 5 7999999999999998865432211 1111 112333 67899999999999855 45688999
Q ss_pred ecccCC
Q psy13409 322 YYAKAD 327 (330)
Q Consensus 322 ~~~~~~ 327 (330)
+|...+
T Consensus 244 ~~~i~g 249 (256)
T PRK12745 244 AIHVDG 249 (256)
T ss_pred EEEECC
Confidence 887643
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-30 Score=236.77 Aligned_cols=227 Identities=22% Similarity=0.336 Sum_probs=183.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
++++||||+||||.++++.|+++|++|++++|+.+++++..+.+ +.++.++.+|+++.++++++++++.+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~Dl~~~~~i~~~~~~~~~~ 71 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL---------GDNLYIAQLDVRNRAAIEEMLASLPAE 71 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---------ccceEEEEecCCCHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999988766554432 346888999999999999999999998
Q ss_pred CCCeeEEEEcCCCCC---CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccccc
Q psy13409 97 ESAIHLLINNAGVMM---CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINL 173 (330)
Q Consensus 97 ~g~iDvlInnAG~~~---~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~ 173 (330)
++.+|++|||||... +..+.+.+++++++++|+.+++.+++.+++.|.+.+.++||++||..+..+.
T Consensus 72 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~---------- 141 (248)
T PRK10538 72 WRNIDVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPY---------- 141 (248)
T ss_pred cCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCcccCCCC----------
Confidence 899999999999753 3356788999999999999999999999999988777899999998776553
Q ss_pred ccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCC
Q psy13409 174 EKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPG 253 (330)
Q Consensus 174 ~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (330)
++...|+++|++++++++.++.++. .
T Consensus 142 ----~~~~~Y~~sK~~~~~~~~~l~~~~~--------------------------------------------------~ 167 (248)
T PRK10538 142 ----AGGNVYGATKAFVRQFSLNLRTDLH--------------------------------------------------G 167 (248)
T ss_pred ----CCCchhHHHHHHHHHHHHHHHHHhc--------------------------------------------------C
Confidence 5677899999999999999999998 5
Q ss_pred CCCCceeEEEeeCcccccC-cccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCcee
Q psy13409 254 ANITNVNTYAVHPGVVDTE-LSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLY 322 (330)
Q Consensus 254 ~~~~~i~v~~v~pG~v~t~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~ 322 (330)
.+|+|++|+||++.|. +......... . ............+|+|+|++++|+++.+.. +.+|+.
T Consensus 168 ---~~i~v~~v~pg~i~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~dvA~~~~~l~~~~~~-~~~~~~ 231 (248)
T PRK10538 168 ---TAVRVTDIEPGLVGGTEFSNVRFKGDD-G-KAEKTYQNTVALTPEDVSEAVWWVATLPAH-VNINTL 231 (248)
T ss_pred ---CCcEEEEEeCCeecccccchhhccCcH-H-HHHhhccccCCCCHHHHHHHHHHHhcCCCc-ccchhh
Confidence 7999999999999844 4322111111 1 111111122357999999999999976643 445544
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-30 Score=237.36 Aligned_cols=235 Identities=22% Similarity=0.222 Sum_probs=192.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
+|+++||||+++||++++++|+++|++|++++|+.+++++..+.+. +.++.++.+|+++++++..+++++.+
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~--------~~~~~~~~~D~~~~~~~~~~~~~~~~ 73 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALG--------DARFVPVACDLTDAASLAAALANAAA 73 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--------CCceEEEEecCCCHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999887766655541 34688999999999999999999999
Q ss_pred cCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccccc
Q psy13409 96 NESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINL 173 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~ 173 (330)
.++++|++||++|...+. .+.+.++|...+.+|+.+++.+.+.+++.+.+++.++||++||..+...
T Consensus 74 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~----------- 142 (257)
T PRK07074 74 ERGPVDVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGSVNGMAA----------- 142 (257)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcCC-----------
Confidence 889999999999986532 5677889999999999999999999999998877899999999765322
Q ss_pred ccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCC
Q psy13409 174 EKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPG 253 (330)
Q Consensus 174 ~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (330)
.+...|+.+|++++.++++++++++ .
T Consensus 143 ----~~~~~y~~sK~a~~~~~~~~a~~~~--------------------------------------------------~ 168 (257)
T PRK07074 143 ----LGHPAYSAAKAGLIHYTKLLAVEYG--------------------------------------------------R 168 (257)
T ss_pred ----CCCcccHHHHHHHHHHHHHHHHHHh--------------------------------------------------H
Confidence 2456899999999999999999998 5
Q ss_pred CCCCceeEEEeeCcccccCcccccCCC-chhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 254 ANITNVNTYAVHPGVVDTELSRHFDSI-IPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 254 ~~~~~i~v~~v~pG~v~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
.||+|++|+||+++|++....... ...............+..++|+|+++++|+++ ...+++|+++...+
T Consensus 169 ---~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~l~~~-~~~~~~g~~~~~~~ 239 (257)
T PRK07074 169 ---FGIRANAVAPGTVKTQAWEARVAANPQVFEELKKWYPLQDFATPDDVANAVLFLASP-AARAITGVCLPVDG 239 (257)
T ss_pred ---hCeEEEEEEeCcCCcchhhcccccChHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCc-hhcCcCCcEEEeCC
Confidence 799999999999999976433221 11112121222223378999999999999965 45689999986544
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.5e-30 Score=238.17 Aligned_cols=219 Identities=26% Similarity=0.303 Sum_probs=185.7
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
++++++++||||++|||.+++++|+++|++|++++|+.+.+++..+++ . .+.++.++.+|++|+++++.+++.
T Consensus 2 ~~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~------~~~~~~~~~~D~~d~~~~~~~~~~ 74 (263)
T PRK09072 2 DLKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARL-P------YPGRHRWVVADLTSEAGREAVLAR 74 (263)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-h------cCCceEEEEccCCCHHHHHHHHHH
Confidence 578999999999999999999999999999999999988877766655 2 256789999999999999999998
Q ss_pred HHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 93 ILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
+.+ ++.+|++|||||.... ..+.+.+++++.+++|+.+++.+++.+++.|.+++.++||++||..+..+.
T Consensus 75 ~~~-~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~------- 146 (263)
T PRK09072 75 ARE-MGGINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGSTFGSIGY------- 146 (263)
T ss_pred HHh-cCCCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecChhhCcCC-------
Confidence 876 7899999999998643 356788899999999999999999999999988777999999998877664
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
++...|+++|+++.+++++++.++.
T Consensus 147 -------~~~~~Y~~sK~a~~~~~~~l~~~~~------------------------------------------------ 171 (263)
T PRK09072 147 -------PGYASYCASKFALRGFSEALRRELA------------------------------------------------ 171 (263)
T ss_pred -------CCccHHHHHHHHHHHHHHHHHHHhc------------------------------------------------
Confidence 5678899999999999999999998
Q ss_pred CCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccc
Q psy13409 251 PPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDK 313 (330)
Q Consensus 251 ~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~ 313 (330)
+ .||+|++|+||+++|++....... .....+ ..+.+|+|+|+.+++++..+
T Consensus 172 --~---~~i~v~~v~Pg~~~t~~~~~~~~~------~~~~~~-~~~~~~~~va~~i~~~~~~~ 222 (263)
T PRK09072 172 --D---TGVRVLYLAPRATRTAMNSEAVQA------LNRALG-NAMDDPEDVAAAVLQAIEKE 222 (263)
T ss_pred --c---cCcEEEEEecCcccccchhhhccc------cccccc-CCCCCHHHHHHHHHHHHhCC
Confidence 5 799999999999999976532211 001111 12679999999999999664
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1e-30 Score=238.45 Aligned_cols=235 Identities=23% Similarity=0.243 Sum_probs=183.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh-hHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSL-EKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~-~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
|+++||||+||||++++++|+++|++|++++|+. +.+++. .+. .+.++.++.+|++++++++++++++.+
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~~~~~~~----~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~~ 72 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGTHVISISRTENKELTKL----AEQ-----YNSNLTFHSLDLQDVHELETNFNEILS 72 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCchHHHHHH----Hhc-----cCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999986 333222 221 245788999999999999999999877
Q ss_pred cCCCe----eEEEEcCCCCCC---CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCCc
Q psy13409 96 NESAI----HLLINNAGVMMC---PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 96 ~~g~i----DvlInnAG~~~~---~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~~ 167 (330)
.++.. .++|+|+|...+ ..+.+.+++.+.+++|+.+++.+++.+++.|.+.+ .++||++||..+..+
T Consensus 73 ~~~~~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~----- 147 (251)
T PRK06924 73 SIQEDNVSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINISSGAAKNP----- 147 (251)
T ss_pred hcCcccCCceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCceEEEecchhhcCC-----
Confidence 65422 289999997643 35778999999999999999999999999998753 579999999876544
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
++.+..|+++|+|++.++++++.|++..
T Consensus 148 ---------~~~~~~Y~~sKaa~~~~~~~la~e~~~~------------------------------------------- 175 (251)
T PRK06924 148 ---------YFGWSAYCSSKAGLDMFTQTVATEQEEE------------------------------------------- 175 (251)
T ss_pred ---------CCCcHHHhHHHHHHHHHHHHHHHHhhhc-------------------------------------------
Confidence 3678899999999999999999997511
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCCC----chhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceec
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSI----IPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYY 323 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~ 323 (330)
+ .+|+|++|+||+++|++....... ....+.........++.+|+|+|+.++++++++ .+++|+++
T Consensus 176 -----~---~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~--~~~~G~~~ 245 (251)
T PRK06924 176 -----E---YPVKIVAFSPGVMDTNMQAQIRSSSKEDFTNLDRFITLKEEGKLLSPEYVAKALRNLLETE--DFPNGEVI 245 (251)
T ss_pred -----C---CCeEEEEecCCccccHhHHHHHhcCcccchHHHHHHHHhhcCCcCCHHHHHHHHHHHHhcc--cCCCCCEe
Confidence 3 689999999999999986532211 111112222222223889999999999999763 58999988
Q ss_pred ccCC
Q psy13409 324 AKAD 327 (330)
Q Consensus 324 ~~~~ 327 (330)
.-.+
T Consensus 246 ~v~~ 249 (251)
T PRK06924 246 DIDE 249 (251)
T ss_pred ehhh
Confidence 6543
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3e-30 Score=236.99 Aligned_cols=218 Identities=22% Similarity=0.245 Sum_probs=182.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
|++|||||+||||++++++|+++|++|++++|+.+.+++..+.+ .+.++.++.+|++++++++++++.+.+.
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~--------~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 73 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAEL--------GAGNAWTGALDVTDRAAWDAALADFAAA 73 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh--------cCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999988776665443 2457899999999999999999988776
Q ss_pred -CCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccccc
Q psy13409 97 -ESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINL 173 (330)
Q Consensus 97 -~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~ 173 (330)
++++|++|||||..... .+.+.++++.++++|+.+++.+++.+.+.|.+++.++||++||..+..+.
T Consensus 74 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~---------- 143 (260)
T PRK08267 74 TGGRLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSASAIYGQ---------- 143 (260)
T ss_pred cCCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCchhhCcCC----------
Confidence 78999999999986542 56788999999999999999999999999988878999999999888775
Q ss_pred ccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCC
Q psy13409 174 EKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPG 253 (330)
Q Consensus 174 ~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (330)
+....|+.||+++++++++++.+++ +
T Consensus 144 ----~~~~~Y~~sKaa~~~~~~~l~~~~~--------------------------------------------------~ 169 (260)
T PRK08267 144 ----PGLAVYSATKFAVRGLTEALDLEWR--------------------------------------------------R 169 (260)
T ss_pred ----CCchhhHHHHHHHHHHHHHHHHHhc--------------------------------------------------c
Confidence 5678999999999999999999998 5
Q ss_pred CCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccc
Q psy13409 254 ANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDK 313 (330)
Q Consensus 254 ~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~ 313 (330)
.+|++++|+||+++|++.+...... ........+ ...+|+|+|+.+++++..+
T Consensus 170 ---~~i~v~~i~pg~~~t~~~~~~~~~~--~~~~~~~~~--~~~~~~~va~~~~~~~~~~ 222 (260)
T PRK08267 170 ---HGIRVADVMPLFVDTAMLDGTSNEV--DAGSTKRLG--VRLTPEDVAEAVWAAVQHP 222 (260)
T ss_pred ---cCcEEEEEecCCcCCcccccccchh--hhhhHhhcc--CCCCHHHHHHHHHHHHhCC
Confidence 7999999999999999876521111 111111122 2578999999999998543
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.1e-30 Score=238.58 Aligned_cols=229 Identities=28% Similarity=0.366 Sum_probs=188.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
+++|++|||||+|+||+++++.|+++|++|++++|+.+.+++..+.+... ..+.++.++.+|++|++++++ ++++
T Consensus 1 ~~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~~D~~d~~~~~~-~~~~ 75 (280)
T PRK06914 1 MNKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQL----NLQQNIKVQQLDVTDQNSIHN-FQLV 75 (280)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhc----CCCCceeEEecCCCCHHHHHH-HHHH
Confidence 36899999999999999999999999999999999988877776655432 124578999999999999999 8888
Q ss_pred HhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccc
Q psy13409 94 LDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDI 171 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~ 171 (330)
.+.++++|++|||||...+. .+.+.+++++.+++|+.+++.+++.+++.|.+.+.++||++||..+..+.
T Consensus 76 ~~~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~~~-------- 147 (280)
T PRK06914 76 LKEIGRIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKSGKIINISSISGRVGF-------- 147 (280)
T ss_pred HHhcCCeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECcccccCCC--------
Confidence 88889999999999976543 56788999999999999999999999999988777999999998877764
Q ss_pred ccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCC
Q psy13409 172 NLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHP 251 (330)
Q Consensus 172 ~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (330)
++...|+++|++++.++++++.++.
T Consensus 148 ------~~~~~Y~~sK~~~~~~~~~l~~~~~------------------------------------------------- 172 (280)
T PRK06914 148 ------PGLSPYVSSKYALEGFSESLRLELK------------------------------------------------- 172 (280)
T ss_pred ------CCCchhHHhHHHHHHHHHHHHHHhh-------------------------------------------------
Confidence 6778999999999999999999987
Q ss_pred CCCCCCceeEEEeeCcccccCcccccCCC--------chhhHHHHH-----HhhhhhccChHHHHHHHHHhhcccc
Q psy13409 252 PGANITNVNTYAVHPGVVDTELSRHFDSI--------IPGTAWLYQ-----RVGGLFIKSPLQGAQTTLYCALDKK 314 (330)
Q Consensus 252 ~~~~~~~i~v~~v~pG~v~t~~~~~~~~~--------~~~~~~~~~-----~~~~~~~~~~~e~a~~~~~l~~~~~ 314 (330)
+ .||++++|+||+++|++....... ......... .....++.+|+|+|++++++++++.
T Consensus 173 -~---~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~~~~~~~ 244 (280)
T PRK06914 173 -P---FGIDVALIEPGSYNTNIWEVGKQLAENQSETTSPYKEYMKKIQKHINSGSDTFGNPIDVANLIVEIAESKR 244 (280)
T ss_pred -h---hCCEEEEEecCCcccchhhccccccccccccccchHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHcCCC
Confidence 5 799999999999999976532110 011111111 1122337899999999999997764
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.6e-30 Score=233.93 Aligned_cols=238 Identities=27% Similarity=0.392 Sum_probs=197.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
++++|+++||||+|+||++++++|+++|++|++++|+.+++.+..+.+.. .+.++.++.+|+++.+++++++++
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~------~~~~~~~~~~Dl~~~~~~~~~~~~ 76 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEA------AGGKARARQVDVRDRAALKAAVAA 76 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh------cCCeEEEEECCCCCHHHHHHHHHH
Confidence 46789999999999999999999999999999999998877776666654 245688999999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcc-cCCCCCccc
Q psy13409 93 ILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHT-WGDGSMHFE 169 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~-~~~~~~~~~ 169 (330)
+.+.++.+|++|||+|...+. .+.+.+++++.+++|+.+++.+++.+++.|.+++.+++|++||..+. .+.
T Consensus 77 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~ss~~~~~~~~------ 150 (251)
T PRK12826 77 GVEDFGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGGGRIVLTSSVAGPRVGY------ 150 (251)
T ss_pred HHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechHhhccCC------
Confidence 999999999999999987542 46678899999999999999999999999988778899999998765 332
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
+....|+++|++++.+++.++.++.
T Consensus 151 --------~~~~~y~~sK~a~~~~~~~~~~~~~----------------------------------------------- 175 (251)
T PRK12826 151 --------PGLAHYAASKAGLVGFTRALALELA----------------------------------------------- 175 (251)
T ss_pred --------CCccHHHHHHHHHHHHHHHHHHHHH-----------------------------------------------
Confidence 5677899999999999999999987
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
. .|++++.|+||++.|+..+...... ...... .+++ ++.+++|+|+.+++++.. ...+++|+.|...+
T Consensus 176 ---~---~~i~~~~i~pg~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~dva~~~~~l~~~-~~~~~~g~~~~~~~ 245 (251)
T PRK12826 176 ---A---RNITVNSVHPGGVDTPMAGNLGDAQ-WAEAIAAAIPLG--RLGEPEDIAAAVLFLASD-EARYITGQTLPVDG 245 (251)
T ss_pred ---H---cCeEEEEEeeCCCCcchhhhcCchH-HHHHHHhcCCCC--CCcCHHHHHHHHHHHhCc-cccCcCCcEEEECC
Confidence 5 7999999999999999765543211 011111 2333 378999999999999855 45678999887654
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-30 Score=267.40 Aligned_cols=244 Identities=22% Similarity=0.267 Sum_probs=198.5
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
....+++|++|||||++|||++++++|+++|++|++++|+.+.+++..+.+.... ...++..+.+|++++++++++
T Consensus 408 ~~~~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~----~~~~~~~v~~Dvtd~~~v~~a 483 (676)
T TIGR02632 408 KEKTLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQF----GAGRAVALKMDVTDEQAVKAA 483 (676)
T ss_pred CCcCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhc----CCCcEEEEECCCCCHHHHHHH
Confidence 3456889999999999999999999999999999999999888777766665432 234678899999999999999
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCC
Q psy13409 90 AQEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSM 166 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~ 166 (330)
++++.+.++++|++|||||.... ..+.+.++|+..+++|+.+++.+++.+++.|.+++ +++||++||..+..+.
T Consensus 484 ~~~i~~~~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a~~~~--- 560 (676)
T TIGR02632 484 FADVALAYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNAVYAG--- 560 (676)
T ss_pred HHHHHHhcCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhhcCCC---
Confidence 99999999999999999997643 35678899999999999999999999999998765 5799999998887774
Q ss_pred cccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccc
Q psy13409 167 HFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKN 246 (330)
Q Consensus 167 ~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (330)
++..+|++||++++.++++++.|++
T Consensus 561 -----------~~~~aY~aSKaA~~~l~r~lA~el~-------------------------------------------- 585 (676)
T TIGR02632 561 -----------KNASAYSAAKAAEAHLARCLAAEGG-------------------------------------------- 585 (676)
T ss_pred -----------CCCHHHHHHHHHHHHHHHHHHHHhc--------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred cccCCCCCCCCceeEEEeeCcccccC--cccccCC----------CchhhHHHH--HHhhhhhccChHHHHHHHHHhhcc
Q psy13409 247 VLFHPPGANITNVNTYAVHPGVVDTE--LSRHFDS----------IIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALD 312 (330)
Q Consensus 247 ~~~~~~~~~~~~i~v~~v~pG~v~t~--~~~~~~~----------~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~ 312 (330)
. .||+||+|+||.|.|+ ++..... .....+... .++++ ..+|+|+|++++||+++
T Consensus 586 ------~---~gIrVn~V~Pg~V~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~r--~v~peDVA~av~~L~s~ 654 (676)
T TIGR02632 586 ------T---YGIRVNTVNPDAVLQGSGIWDGEWREERAAAYGIPADELEEHYAKRTLLKR--HIFPADIAEAVFFLASS 654 (676)
T ss_pred ------c---cCeEEEEEECCceecCcccccccchhhhhhcccCChHHHHHHHHhcCCcCC--CcCHHHHHHHHHHHhCC
Confidence 5 7999999999998653 3221100 000011111 23333 78999999999999865
Q ss_pred ccccccCceecccCC
Q psy13409 313 KKCERETGLYYAKAD 327 (330)
Q Consensus 313 ~~~~~~~G~~~~~~~ 327 (330)
.++++||+++....
T Consensus 655 -~~~~~TG~~i~vDG 668 (676)
T TIGR02632 655 -KSEKTTGCIITVDG 668 (676)
T ss_pred -cccCCcCcEEEECC
Confidence 45799999987643
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-30 Score=238.47 Aligned_cols=216 Identities=27% Similarity=0.343 Sum_probs=181.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
++++++||||+||||++++++|+++|++|++++|+.+..+. ..++.++.+|++|+++++++++.+.
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~--------------~~~~~~~~~D~~d~~~~~~~~~~~~ 68 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAP--------------IPGVELLELDVTDDASVQAAVDEVI 68 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhccc--------------cCCCeeEEeecCCHHHHHHHHHHHH
Confidence 57899999999999999999999999999999998754321 2357889999999999999999999
Q ss_pred hcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccc
Q psy13409 95 DNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDIN 172 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~ 172 (330)
+.++++|++|||||..... .+.+.++++.++++|+.+++.+++.+++.|.+++.++||++||..+..+.
T Consensus 69 ~~~g~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~--------- 139 (270)
T PRK06179 69 ARAGRIDVLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGSGRIINISSVLGFLPA--------- 139 (270)
T ss_pred HhCCCCCEEEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEECCccccCCC---------
Confidence 9999999999999986532 56788999999999999999999999999998888999999998877664
Q ss_pred cccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCC
Q psy13409 173 LEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPP 252 (330)
Q Consensus 173 ~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (330)
+....|+++|++++.++++++.|++
T Consensus 140 -----~~~~~Y~~sK~a~~~~~~~l~~el~-------------------------------------------------- 164 (270)
T PRK06179 140 -----PYMALYAASKHAVEGYSESLDHEVR-------------------------------------------------- 164 (270)
T ss_pred -----CCccHHHHHHHHHHHHHHHHHHHHh--------------------------------------------------
Confidence 5678899999999999999999998
Q ss_pred CCCCCceeEEEeeCcccccCcccccCCCc-hhh--HH----H----HHHhhhhhccChHHHHHHHHHhhccc
Q psy13409 253 GANITNVNTYAVHPGVVDTELSRHFDSII-PGT--AW----L----YQRVGGLFIKSPLQGAQTTLYCALDK 313 (330)
Q Consensus 253 ~~~~~~i~v~~v~pG~v~t~~~~~~~~~~-~~~--~~----~----~~~~~~~~~~~~~e~a~~~~~l~~~~ 313 (330)
. .||++++|+||+++|++........ ... .. . ..++.+ ..+|+++|+.+++++.++
T Consensus 165 ~---~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~va~~~~~~~~~~ 231 (270)
T PRK06179 165 Q---FGIRVSLVEPAYTKTNFDANAPEPDSPLAEYDRERAVVSKAVAKAVKK--ADAPEVVADTVVKAALGP 231 (270)
T ss_pred h---hCcEEEEEeCCCcccccccccCCCCCcchhhHHHHHHHHHHHHhcccc--CCCHHHHHHHHHHHHcCC
Confidence 5 8999999999999999876443211 000 00 0 112222 578999999999998764
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-30 Score=232.58 Aligned_cols=215 Identities=18% Similarity=0.235 Sum_probs=185.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
+|+++||||++|||++++++|+++|++|++++|+.++++++.+.+.... .+.++.++.+|++++++++++++++.+
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~ 77 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARY----PGIKVAVAALDVNDHDQVFEVFAEFRD 77 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhC----CCceEEEEEcCCCCHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999988877776665432 356899999999999999999999999
Q ss_pred cCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccccc
Q psy13409 96 NESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINL 173 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~ 173 (330)
.++++|++|||||+.... .+.+.+.+++.+++|+.+++.+++.+++.|.+.+.++||++||..+..+.
T Consensus 78 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~---------- 147 (248)
T PRK08251 78 ELGGLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGSGHLVLISSVSAVRGL---------- 147 (248)
T ss_pred HcCCCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeccccccCC----------
Confidence 999999999999986543 45667888999999999999999999999988778899999998887764
Q ss_pred ccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCC
Q psy13409 174 EKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPG 253 (330)
Q Consensus 174 ~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (330)
+.....|+.||++++.+++.++.++. .
T Consensus 148 ---~~~~~~Y~~sK~a~~~~~~~l~~~~~--------------------------------------------------~ 174 (248)
T PRK08251 148 ---PGVKAAYAASKAGVASLGEGLRAELA--------------------------------------------------K 174 (248)
T ss_pred ---CCCcccHHHHHHHHHHHHHHHHHHhc--------------------------------------------------c
Confidence 12357899999999999999999987 5
Q ss_pred CCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccc
Q psy13409 254 ANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDK 313 (330)
Q Consensus 254 ~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~ 313 (330)
.+|++++|+||+|+|++.+..... ..+.+++|+|+.++..+..+
T Consensus 175 ---~~i~v~~v~pg~v~t~~~~~~~~~-------------~~~~~~~~~a~~i~~~~~~~ 218 (248)
T PRK08251 175 ---TPIKVSTIEPGYIRSEMNAKAKST-------------PFMVDTETGVKALVKAIEKE 218 (248)
T ss_pred ---cCcEEEEEecCcCcchhhhccccC-------------CccCCHHHHHHHHHHHHhcC
Confidence 799999999999999987654321 12578999999999988553
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-30 Score=232.22 Aligned_cols=227 Identities=22% Similarity=0.247 Sum_probs=184.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
+.+|+++||||+++||++++++|+++|++|++++|+.+. . .. ..++.+|+++.++++++++++
T Consensus 1 ~~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~------~---------~~--~~~~~~D~~~~~~~~~~~~~~ 63 (234)
T PRK07577 1 MSSRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAID------D---------FP--GELFACDLADIEQTAATLAQI 63 (234)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCccc------c---------cC--ceEEEeeCCCHHHHHHHHHHH
Confidence 357999999999999999999999999999999998653 0 01 146789999999999999998
Q ss_pred HhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccc
Q psy13409 94 LDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDI 171 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~ 171 (330)
.+.+ .+|++|||+|..... .+.+.++++..+++|+.+++.+.+.+++.|.+.+.++||++||.. .++.
T Consensus 64 ~~~~-~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~-~~~~-------- 133 (234)
T PRK07577 64 NEIH-PVDAIVNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQGRIVNICSRA-IFGA-------- 133 (234)
T ss_pred HHhC-CCcEEEECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcccc-ccCC--------
Confidence 8876 589999999986543 456789999999999999999999999999887789999999975 3442
Q ss_pred ccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCC
Q psy13409 172 NLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHP 251 (330)
Q Consensus 172 ~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (330)
+....|+++|+++++++++++.|++
T Consensus 134 ------~~~~~Y~~sK~a~~~~~~~~a~e~~------------------------------------------------- 158 (234)
T PRK07577 134 ------LDRTSYSAAKSALVGCTRTWALELA------------------------------------------------- 158 (234)
T ss_pred ------CCchHHHHHHHHHHHHHHHHHHHHH-------------------------------------------------
Confidence 5677899999999999999999998
Q ss_pred CCCCCCceeEEEeeCcccccCcccccCCCch-hhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 252 PGANITNVNTYAVHPGVVDTELSRHFDSIIP-GTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 252 ~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
+ .||++++|+||+++|++.+....... .........+..+..+|+|+|+.++++++++ ..+++|++|....
T Consensus 159 -~---~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~-~~~~~g~~~~~~g 230 (234)
T PRK07577 159 -E---YGITVNAVAPGPIETELFRQTRPVGSEEEKRVLASIPMRRLGTPEEVAAAIAFLLSDD-AGFITGQVLGVDG 230 (234)
T ss_pred -h---hCcEEEEEecCcccCcccccccccchhHHHHHhhcCCCCCCcCHHHHHHHHHHHhCcc-cCCccceEEEecC
Confidence 5 79999999999999998765432211 1111222222222679999999999999664 5689999987654
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=257.99 Aligned_cols=234 Identities=23% Similarity=0.288 Sum_probs=190.1
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh--hHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL--EKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~--~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.++|++++||||++|||+++++.|+++|++|+++++.. +.+.+..+++ ...++.+|+++++++++++
T Consensus 207 ~~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~-----------~~~~~~~Dv~~~~~~~~~~ 275 (450)
T PRK08261 207 PLAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRV-----------GGTALALDITAPDAPARIA 275 (450)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHc-----------CCeEEEEeCCCHHHHHHHH
Confidence 46899999999999999999999999999999998853 2222222211 2347889999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 91 QEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
+.+.+.++++|++|||||..... .+.+.++|+..+++|+.+++.+.+.+.+.+..+..++||++||.++..+.
T Consensus 276 ~~~~~~~g~id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~~~~~g~----- 350 (450)
T PRK08261 276 EHLAERHGGLDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSISGIAGN----- 350 (450)
T ss_pred HHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCCC-----
Confidence 99999999999999999976532 56788999999999999999999999997655567999999999887775
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
+++..|+++|+++++|+++++.+++
T Consensus 351 ---------~~~~~Y~asKaal~~~~~~la~el~---------------------------------------------- 375 (450)
T PRK08261 351 ---------RGQTNYAASKAGVIGLVQALAPLLA---------------------------------------------- 375 (450)
T ss_pred ---------CCChHHHHHHHHHHHHHHHHHHHHh----------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
. .||++|+|+||+++|++................++.+ ..+|+|+|++++||+++ .+.++||+.|....
T Consensus 376 ----~---~gi~v~~v~PG~i~t~~~~~~~~~~~~~~~~~~~l~~--~~~p~dva~~~~~l~s~-~~~~itG~~i~v~g 444 (450)
T PRK08261 376 ----E---RGITINAVAPGFIETQMTAAIPFATREAGRRMNSLQQ--GGLPVDVAETIAWLASP-ASGGVTGNVVRVCG 444 (450)
T ss_pred ----h---hCcEEEEEEeCcCcchhhhccchhHHHHHhhcCCcCC--CCCHHHHHHHHHHHhCh-hhcCCCCCEEEECC
Confidence 5 7999999999999999876543211111111123333 67899999999999865 66799999986543
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-30 Score=231.04 Aligned_cols=238 Identities=28% Similarity=0.387 Sum_probs=194.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChh-HHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLE-KAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~-~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
++++|+++||||+|+||.++++.|+++|++|+++.|+.. ..+...++++. .+.++.++.+|+++.+++.++++
T Consensus 2 ~~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Dl~~~~~~~~~~~ 75 (248)
T PRK05557 2 SLEGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGA------LGGKALAVQGDVSDAESVERAVD 75 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHh------cCCceEEEEcCCCCHHHHHHHHH
Confidence 578899999999999999999999999999988888754 34455555543 25678899999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 92 EILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
++.+.++++|++||++|..... .+.+.+.+++.+++|+.+++.+.+.+++.+.+.+.+++|++||..+..+.
T Consensus 76 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~~~~~~~------ 149 (248)
T PRK05557 76 EAKAEFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSVVGLMGN------ 149 (248)
T ss_pred HHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcccccCcCC------
Confidence 9999889999999999976543 45677889999999999999999999999988777899999998877774
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
++...|+++|++++.+++.++.++.
T Consensus 150 --------~~~~~y~~sk~a~~~~~~~~a~~~~----------------------------------------------- 174 (248)
T PRK05557 150 --------PGQANYAASKAGVIGFTKSLARELA----------------------------------------------- 174 (248)
T ss_pred --------CCCchhHHHHHHHHHHHHHHHHHhh-----------------------------------------------
Confidence 5678899999999999999999987
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
. .+|++++|+||+++|++.+..... ...............+++|+|+.+++|+.. .+.+++|+.|...
T Consensus 175 ---~---~~i~~~~v~pg~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~va~~~~~l~~~-~~~~~~g~~~~i~ 242 (248)
T PRK05557 175 ---S---RGITVNAVAPGFIETDMTDALPED--VKEAILAQIPLGRLGQPEEIASAVAFLASD-EAAYITGQTLHVN 242 (248)
T ss_pred ---h---hCeEEEEEecCccCCccccccChH--HHHHHHhcCCCCCCcCHHHHHHHHHHHcCc-ccCCccccEEEec
Confidence 5 799999999999999886654221 111111111122268999999999999855 4568899988754
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-30 Score=236.61 Aligned_cols=228 Identities=26% Similarity=0.355 Sum_probs=186.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
.+++|+++||||+++||++++++|+++|++|++++|+.+.+++..+.+.. .+.++.++.+|+++++++++++++
T Consensus 7 ~~~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~------~~~~~~~~~~Dl~~~~~~~~~~~~ 80 (274)
T PRK07775 7 HPDRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRA------DGGEAVAFPLDVTDPDSVKSFVAQ 80 (274)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh------cCCeEEEEECCCCCHHHHHHHHHH
Confidence 46789999999999999999999999999999999998777666655544 245788999999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 93 ILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
+.+.++.+|++|||||.... ..+.+.+.++..+++|+.+++++++.+++.|.+++.++||++||..+..+.
T Consensus 81 ~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g~iv~isS~~~~~~~------- 153 (274)
T PRK07775 81 AEEALGEIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRGDLIFVGSDVALRQR------- 153 (274)
T ss_pred HHHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECChHhcCCC-------
Confidence 98888999999999997653 246678899999999999999999999999988777999999998766553
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
+....|+++|++++.+++++++++.
T Consensus 154 -------~~~~~Y~~sK~a~~~l~~~~~~~~~------------------------------------------------ 178 (274)
T PRK07775 154 -------PHMGAYGAAKAGLEAMVTNLQMELE------------------------------------------------ 178 (274)
T ss_pred -------CCcchHHHHHHHHHHHHHHHHHHhc------------------------------------------------
Confidence 5567899999999999999999987
Q ss_pred CCCCCCCceeEEEeeCcccccCcccccCCCc--hhhHHHHH--HhhhhhccChHHHHHHHHHhhccc
Q psy13409 251 PPGANITNVNTYAVHPGVVDTELSRHFDSII--PGTAWLYQ--RVGGLFIKSPLQGAQTTLYCALDK 313 (330)
Q Consensus 251 ~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~e~a~~~~~l~~~~ 313 (330)
. .||++++|+||+++|++........ ........ .....++..++|+|++++++++.+
T Consensus 179 --~---~gi~v~~v~pG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~a~~~~~~~~ 240 (274)
T PRK07775 179 --G---TGVRASIVHPGPTLTGMGWSLPAEVIGPMLEDWAKWGQARHDYFLRASDLARAITFVAETP 240 (274)
T ss_pred --c---cCeEEEEEeCCcccCcccccCChhhhhHHHHHHHHhcccccccccCHHHHHHHHHHHhcCC
Confidence 5 7999999999999999754432211 11111111 111123789999999999999764
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-30 Score=231.34 Aligned_cols=237 Identities=25% Similarity=0.280 Sum_probs=190.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEE-ecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMA-CRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~-~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
|+++||||+|+||++++++|+++|++|+++ .|+.+...+...++.. .+.++..+.+|++|+++++++++++.+
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~D~~d~~~i~~~~~~~~~ 75 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQ------AGGKAFVLQADISDENQVVAMFTAIDQ 75 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHh------CCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 689999999999999999999999998774 6777776666666654 255788999999999999999999999
Q ss_pred cCCCeeEEEEcCCCCCC---CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC---CCeEEEEcCCCcccCCCCCccc
Q psy13409 96 NESAIHLLINNAGVMMC---PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA---PARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~---~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~---~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
.++.+|++|||+|.... ..+.+.++++..+++|+.+++.+++.+++.+.++. .|++|++||..+..+.
T Consensus 76 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~~~------ 149 (247)
T PRK09730 76 HDEPLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRLGA------ 149 (247)
T ss_pred hCCCCCEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhccCC------
Confidence 99999999999997532 25678889999999999999999999999987753 5789999998877663
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
+..+..|+++|++++.++++++.++.
T Consensus 150 -------~~~~~~Y~~sK~~~~~~~~~l~~~~~----------------------------------------------- 175 (247)
T PRK09730 150 -------PGEYVDYAASKGAIDTLTTGLSLEVA----------------------------------------------- 175 (247)
T ss_pred -------CCcccchHhHHHHHHHHHHHHHHHHH-----------------------------------------------
Confidence 12245799999999999999999998
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
+ .||++++|+||++.|++...... ..............+..+|+|+|+.++++++++ ..+++|++|....
T Consensus 176 ---~---~~i~v~~i~pg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~dva~~~~~~~~~~-~~~~~g~~~~~~g 245 (247)
T PRK09730 176 ---A---QGIRVNCVRPGFIYTEMHASGGE-PGRVDRVKSNIPMQRGGQPEEVAQAIVWLLSDK-ASYVTGSFIDLAG 245 (247)
T ss_pred ---H---hCeEEEEEEeCCCcCcccccCCC-HHHHHHHHhcCCCCCCcCHHHHHHHHHhhcChh-hcCccCcEEecCC
Confidence 5 79999999999999997543221 111111211111222569999999999999764 4689999987654
|
|
| >KOG1611|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-30 Score=227.39 Aligned_cols=226 Identities=29% Similarity=0.365 Sum_probs=186.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHC-CCE-EEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKR-GAR-VIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~-G~~-Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
-+.++||||.+|||+.++++|++. |.. ++.+.|+.+...+..+.... ...+++.+++|+++.++++.+++++
T Consensus 3 pksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a~~~l~~k~~------~d~rvHii~Ldvt~deS~~~~~~~V 76 (249)
T KOG1611|consen 3 PKSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKAATELALKSK------SDSRVHIIQLDVTCDESIDNFVQEV 76 (249)
T ss_pred CccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHhhHHHHHhhc------cCCceEEEEEecccHHHHHHHHHHH
Confidence 356999999999999999999976 565 45567777775332222221 3789999999999999999999999
Q ss_pred Hhc--CCCeeEEEEcCCCCCCC---CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCC-----------eEEEEcCC
Q psy13409 94 LDN--ESAIHLLINNAGVMMCP---RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPA-----------RIINLSSL 157 (330)
Q Consensus 94 ~~~--~g~iDvlInnAG~~~~~---~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g-----------~IV~iSS~ 157 (330)
.+. ...+|+||||||+..+- .+.+.+.|.+.+++|..|++.+.|+++|.+.+.... .|||+||.
T Consensus 77 ~~iVg~~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS~ 156 (249)
T KOG1611|consen 77 EKIVGSDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISSS 156 (249)
T ss_pred HhhcccCCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeecc
Confidence 997 45799999999988643 567788899999999999999999999999886533 79999998
Q ss_pred CcccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCC
Q psy13409 158 AHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQ 237 (330)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (330)
.+..+. ....++.+|.+||+|+++|+|+++.|++
T Consensus 157 ~~s~~~-----------~~~~~~~AYrmSKaAlN~f~ksls~dL~----------------------------------- 190 (249)
T KOG1611|consen 157 AGSIGG-----------FRPGGLSAYRMSKAALNMFAKSLSVDLK----------------------------------- 190 (249)
T ss_pred ccccCC-----------CCCcchhhhHhhHHHHHHHHHHhhhhhc-----------------------------------
Confidence 887653 1236788999999999999999999999
Q ss_pred CCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccc
Q psy13409 238 TPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCER 317 (330)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~ 317 (330)
. .+|-|.++|||||.|+|...-. ..+|||.+..++..... ....
T Consensus 191 ---------------~---~~ilv~sihPGwV~TDMgg~~a-----------------~ltveeSts~l~~~i~k-L~~~ 234 (249)
T KOG1611|consen 191 ---------------D---DHILVVSIHPGWVQTDMGGKKA-----------------ALTVEESTSKLLASINK-LKNE 234 (249)
T ss_pred ---------------C---CcEEEEEecCCeEEcCCCCCCc-----------------ccchhhhHHHHHHHHHh-cCcc
Confidence 5 7999999999999999988432 56889999988888744 4457
Q ss_pred cCceecccCCCC
Q psy13409 318 ETGLYYAKADLP 329 (330)
Q Consensus 318 ~~G~~~~~~~~~ 329 (330)
.+|.|++....|
T Consensus 235 hnG~ffn~dlt~ 246 (249)
T KOG1611|consen 235 HNGGFFNRDGTP 246 (249)
T ss_pred cCcceEccCCCc
Confidence 799999986654
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-30 Score=225.04 Aligned_cols=184 Identities=29% Similarity=0.368 Sum_probs=167.8
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
+.+.|-++|||||++|||+++|++|.+.|-+|++++|+..+++++.+. ...+...+||+.|.++++++++
T Consensus 1 mk~tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~----------~p~~~t~v~Dv~d~~~~~~lve 70 (245)
T COG3967 1 MKTTGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAE----------NPEIHTEVCDVADRDSRRELVE 70 (245)
T ss_pred CcccCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhc----------CcchheeeecccchhhHHHHHH
Confidence 357899999999999999999999999999999999999999887765 3457889999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCCC----CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCc
Q psy13409 92 EILDNESAIHLLINNAGVMMCP----RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~----~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~ 167 (330)
++.+.++.++++|||||+...- .+...++.++.+.+|+.+|+.+++.++|++.++..+.||++||..+..+.
T Consensus 71 wLkk~~P~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~IInVSSGLafvPm---- 146 (245)
T COG3967 71 WLKKEYPNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEATIINVSSGLAFVPM---- 146 (245)
T ss_pred HHHhhCCchheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCceEEEeccccccCcc----
Confidence 9999999999999999998643 34456677889999999999999999999999989999999999988775
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
...+.||++|+|++.++.+|...+.
T Consensus 147 ----------~~~PvYcaTKAaiHsyt~aLR~Qlk--------------------------------------------- 171 (245)
T COG3967 147 ----------ASTPVYCATKAAIHSYTLALREQLK--------------------------------------------- 171 (245)
T ss_pred ----------cccccchhhHHHHHHHHHHHHHHhh---------------------------------------------
Confidence 6788999999999999999999887
Q ss_pred ccCCCCCCCCceeEEEeeCcccccC
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTE 272 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~ 272 (330)
. .+|.|.-+.|..|+|+
T Consensus 172 -----~---t~veVIE~~PP~V~t~ 188 (245)
T COG3967 172 -----D---TSVEVIELAPPLVDTT 188 (245)
T ss_pred -----h---cceEEEEecCCceecC
Confidence 6 7999999999999997
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=229.08 Aligned_cols=235 Identities=23% Similarity=0.261 Sum_probs=185.0
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecC-hhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRS-LEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~-~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
++++++++|||||+++||++++++|+++|++|+++.|+ .+......+.+.. .+.++.++.+|+++++++++++
T Consensus 2 ~~~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~D~~~~~~~~~~~ 75 (252)
T PRK06077 2 YSLKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKE------NGGEGIGVLADVSTREGCETLA 75 (252)
T ss_pred CCCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHH------cCCeeEEEEeccCCHHHHHHHH
Confidence 45789999999999999999999999999998887754 3444444444443 2456788999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 91 QEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
+++.+.++++|++|||||...+. .+.+.+.++..+++|+.+++.+++.+.+.|.+ .++||++||..+..+.
T Consensus 76 ~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~--~~~iv~~sS~~~~~~~----- 148 (252)
T PRK06077 76 KATIDRYGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMRE--GGAIVNIASVAGIRPA----- 148 (252)
T ss_pred HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhc--CcEEEEEcchhccCCC-----
Confidence 99999999999999999975433 45677788999999999999999999998865 4899999998876553
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
++...|+++|+++++++++++.+++
T Consensus 149 ---------~~~~~Y~~sK~~~~~~~~~l~~~~~---------------------------------------------- 173 (252)
T PRK06077 149 ---------YGLSIYGAMKAAVINLTKYLALELA---------------------------------------------- 173 (252)
T ss_pred ---------CCchHHHHHHHHHHHHHHHHHHHHh----------------------------------------------
Confidence 6778999999999999999999987
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCchh--hHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceeccc
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPG--TAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAK 325 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~ 325 (330)
++|+++.|.||+|+|++.......... ............+.+|+|+|+.+++++..+ ..+|+.|.-
T Consensus 174 --------~~i~v~~v~Pg~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~~~~~~---~~~g~~~~i 241 (252)
T PRK06077 174 --------PKIRVNAIAPGFVKTKLGESLFKVLGMSEKEFAEKFTLMGKILDPEEVAEFVAAILKIE---SITGQVFVL 241 (252)
T ss_pred --------cCCEEEEEeeCCccChHHHhhhhcccccHHHHHHhcCcCCCCCCHHHHHHHHHHHhCcc---ccCCCeEEe
Confidence 589999999999999976543221111 111111111123689999999999998543 457776643
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-29 Score=228.46 Aligned_cols=212 Identities=25% Similarity=0.314 Sum_probs=180.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
|+++||||++|||++++++|+++|++|++++|+.++.++..+.+... .+.++.++++|++++++++++++++.+
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~~~~~- 75 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRAR-----GAVAVSTHELDILDTASHAAFLDSLPA- 75 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHh-----cCCeEEEEecCCCChHHHHHHHHHHhh-
Confidence 68999999999999999999999999999999998877776666543 356899999999999999999888755
Q ss_pred CCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccc
Q psy13409 97 ESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLE 174 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~ 174 (330)
.+|++|||+|..... .+.+.+++.+.+++|+.+++.+++.+.+.|.+++.+++|++||..+..+.
T Consensus 76 --~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~----------- 142 (243)
T PRK07102 76 --LPDIVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSVAGDRGR----------- 142 (243)
T ss_pred --cCCEEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecccccCCC-----------
Confidence 369999999976433 56678889999999999999999999999988878999999998876663
Q ss_pred cCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCCC
Q psy13409 175 KGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGA 254 (330)
Q Consensus 175 ~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (330)
+....|+++|+++++++++++.|+. .
T Consensus 143 ---~~~~~Y~~sK~a~~~~~~~l~~el~--------------------------------------------------~- 168 (243)
T PRK07102 143 ---ASNYVYGSAKAALTAFLSGLRNRLF--------------------------------------------------K- 168 (243)
T ss_pred ---CCCcccHHHHHHHHHHHHHHHHHhh--------------------------------------------------c-
Confidence 5667899999999999999999998 5
Q ss_pred CCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccc
Q psy13409 255 NITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKC 315 (330)
Q Consensus 255 ~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~ 315 (330)
.||+|++|+||+|+|++...... +...+.+|+|+|+.++.+++.+..
T Consensus 169 --~gi~v~~v~pg~v~t~~~~~~~~------------~~~~~~~~~~~a~~i~~~~~~~~~ 215 (243)
T PRK07102 169 --SGVHVLTVKPGFVRTPMTAGLKL------------PGPLTAQPEEVAKDIFRAIEKGKD 215 (243)
T ss_pred --cCcEEEEEecCcccChhhhccCC------------CccccCCHHHHHHHHHHHHhCCCC
Confidence 79999999999999997654321 112267999999999999976543
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=226.79 Aligned_cols=231 Identities=24% Similarity=0.290 Sum_probs=192.4
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
++++++|++|||||+|+||++++++|+++|++|++++|+..+..+..+++.. ..+..+.+|+++.+++++++
T Consensus 2 ~~~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~ 73 (239)
T PRK12828 2 EHSLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPA--------DALRIGGIDLVDPQAARRAV 73 (239)
T ss_pred CCCCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhh--------cCceEEEeecCCHHHHHHHH
Confidence 4568899999999999999999999999999999999998776665555432 23567789999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 91 QEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
+.+.+.++++|++||++|..... ...+.+++++.+++|+.+++.+++.+++.+.+++.++||++||..+..+.
T Consensus 74 ~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~----- 148 (239)
T PRK12828 74 DEVNRQFGRLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGAGAALKAG----- 148 (239)
T ss_pred HHHHHHhCCcCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECchHhccCC-----
Confidence 99999999999999999976432 45678889999999999999999999999988778999999998876553
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
+....|+++|++++.++++++.++.
T Consensus 149 ---------~~~~~y~~sk~a~~~~~~~~a~~~~---------------------------------------------- 173 (239)
T PRK12828 149 ---------PGMGAYAAAKAGVARLTEALAAELL---------------------------------------------- 173 (239)
T ss_pred ---------CCcchhHHHHHHHHHHHHHHHHHhh----------------------------------------------
Confidence 5678899999999999999999987
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
. .+|+++.|.||++.|+........ ..+.. +.+++|+|+.+++++.++ +.+++|+.+.-.+
T Consensus 174 ----~---~~i~~~~i~pg~v~~~~~~~~~~~--------~~~~~--~~~~~dva~~~~~~l~~~-~~~~~g~~~~~~g 234 (239)
T PRK12828 174 ----D---RGITVNAVLPSIIDTPPNRADMPD--------ADFSR--WVTPEQIAAVIAFLLSDE-AQAITGASIPVDG 234 (239)
T ss_pred ----h---cCeEEEEEecCcccCcchhhcCCc--------hhhhc--CCCHHHHHHHHHHHhCcc-cccccceEEEecC
Confidence 5 799999999999999864432211 11222 578999999999998653 4578999886544
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=227.42 Aligned_cols=239 Identities=28% Similarity=0.401 Sum_probs=197.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
++++|++|||||+|+||.+++++|+++|++|++++|+.++.+.....+.. .+.++.++.+|+++++++.+++++
T Consensus 2 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~------~~~~~~~~~~D~~~~~~~~~~~~~ 75 (246)
T PRK05653 2 SLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRA------AGGEARVLVFDVSDEAAVRALIEA 75 (246)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHh------cCCceEEEEccCCCHHHHHHHHHH
Confidence 46789999999999999999999999999999999998887777766654 356788999999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 93 ILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
+.+.++.+|++||++|..... .+.+.++++..++.|+.+++.+++.+.+.|.+.+.++||++||..+..+.
T Consensus 76 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~ss~~~~~~~------- 148 (246)
T PRK05653 76 AVEAFGALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNISSVSGVTGN------- 148 (246)
T ss_pred HHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhccCC-------
Confidence 988889999999999976542 56778889999999999999999999999987777899999998776653
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
..+..|+.+|++++.+++++++++.
T Consensus 149 -------~~~~~y~~sk~~~~~~~~~l~~~~~------------------------------------------------ 173 (246)
T PRK05653 149 -------PGQTNYSAAKAGVIGFTKALALELA------------------------------------------------ 173 (246)
T ss_pred -------CCCcHhHhHHHHHHHHHHHHHHHHh------------------------------------------------
Confidence 5677899999999999999999987
Q ss_pred CCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 251 PPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 251 ~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
. .++++++|+||.+.++........ ..+..........+.+++|+|+.+++++.. ....++|++|...+
T Consensus 174 --~---~~i~~~~i~pg~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~dva~~~~~~~~~-~~~~~~g~~~~~~g 242 (246)
T PRK05653 174 --S---RGITVNAVAPGFIDTDMTEGLPEE--VKAEILKEIPLGRLGQPEEVANAVAFLASD-AASYITGQVIPVNG 242 (246)
T ss_pred --h---cCeEEEEEEeCCcCCcchhhhhHH--HHHHHHhcCCCCCCcCHHHHHHHHHHHcCc-hhcCccCCEEEeCC
Confidence 5 799999999999999876532211 111111122223378999999999999854 45678999887654
|
|
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-30 Score=230.52 Aligned_cols=220 Identities=23% Similarity=0.290 Sum_probs=174.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCC--CEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRG--ARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G--~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
|+++||||++|||++++++|+++| ..|++..|+.... . ...++.+++||+++.++++++.
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~------~--------~~~~~~~~~~Dls~~~~~~~~~---- 62 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD------F--------QHDNVQWHALDVTDEAEIKQLS---- 62 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc------c--------ccCceEEEEecCCCHHHHHHHH----
Confidence 579999999999999999999985 5677666654320 0 2457889999999999888754
Q ss_pred hcCCCeeEEEEcCCCCCC--------CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCC
Q psy13409 95 DNESAIHLLINNAGVMMC--------PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSM 166 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~--------~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~ 166 (330)
+.++++|++|||||.... ..+.+.+.++..+++|+.+++.+++.++|.|.+.+.++|+++||..+....
T Consensus 63 ~~~~~id~li~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~i~~iss~~~~~~~--- 139 (235)
T PRK09009 63 EQFTQLDWLINCVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSESAKFAVISAKVGSISD--- 139 (235)
T ss_pred HhcCCCCEEEECCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCCceEEEEeeccccccc---
Confidence 446789999999998642 145677889999999999999999999999987767899999987654331
Q ss_pred cccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccc
Q psy13409 167 HFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKN 246 (330)
Q Consensus 167 ~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (330)
.+.+++..|+++|++++.|+++|+.|++..
T Consensus 140 --------~~~~~~~~Y~asK~a~~~~~~~la~e~~~~------------------------------------------ 169 (235)
T PRK09009 140 --------NRLGGWYSYRASKAALNMFLKTLSIEWQRS------------------------------------------ 169 (235)
T ss_pred --------CCCCCcchhhhhHHHHHHHHHHHHHHhhcc------------------------------------------
Confidence 123567799999999999999999998721
Q ss_pred cccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 247 VLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 247 ~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
. ++|+||+|+||+|+|++....... .+.++ ..+|+|+|+.+++++++ .+++++|+++...
T Consensus 170 ------~---~~i~v~~v~PG~v~t~~~~~~~~~--------~~~~~--~~~~~~~a~~~~~l~~~-~~~~~~g~~~~~~ 229 (235)
T PRK09009 170 ------L---KHGVVLALHPGTTDTALSKPFQQN--------VPKGK--LFTPEYVAQCLLGIIAN-ATPAQSGSFLAYD 229 (235)
T ss_pred ------c---CCeEEEEEcccceecCCCcchhhc--------cccCC--CCCHHHHHHHHHHHHHc-CChhhCCcEEeeC
Confidence 2 589999999999999987643221 12233 67999999999999976 4568899998754
Q ss_pred C
Q psy13409 327 D 327 (330)
Q Consensus 327 ~ 327 (330)
.
T Consensus 230 g 230 (235)
T PRK09009 230 G 230 (235)
T ss_pred C
Confidence 3
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=230.07 Aligned_cols=238 Identities=20% Similarity=0.155 Sum_probs=183.4
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChh-HHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLE-KAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~-~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.++++|+++||||+||||++++++|+++|++|++++|+.+ .++...+.++. .+.++.++.+|+++++++++++
T Consensus 2 ~~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~------~~~~~~~~~~D~~~~~~~~~~~ 75 (248)
T PRK07806 2 GDLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEA------AGGRASAVGADLTDEESVAALM 75 (248)
T ss_pred CCCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHh------cCCceEEEEcCCCCHHHHHHHH
Confidence 3578999999999999999999999999999999999753 45555555543 2456889999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 91 QEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
+++.+.++.+|++|||||..... ..+++..+++|+.+++++++.+.+.|.+ .++||++||..+....
T Consensus 76 ~~~~~~~~~~d~vi~~ag~~~~~----~~~~~~~~~vn~~~~~~l~~~~~~~~~~--~~~iv~isS~~~~~~~------- 142 (248)
T PRK07806 76 DTAREEFGGLDALVLNASGGMES----GMDEDYAMRLNRDAQRNLARAALPLMPA--GSRVVFVTSHQAHFIP------- 142 (248)
T ss_pred HHHHHhCCCCcEEEECCCCCCCC----CCCcceeeEeeeHHHHHHHHHHHhhccC--CceEEEEeCchhhcCc-------
Confidence 99988889999999999865321 1235667889999999999999998853 4799999996543211
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
...+.+.+..|++||++++.++++++.++.
T Consensus 143 --~~~~~~~~~~Y~~sK~a~e~~~~~l~~~~~------------------------------------------------ 172 (248)
T PRK07806 143 --TVKTMPEYEPVARSKRAGEDALRALRPELA------------------------------------------------ 172 (248)
T ss_pred --cccCCccccHHHHHHHHHHHHHHHHHHHhh------------------------------------------------
Confidence 001124467899999999999999999998
Q ss_pred CCCCCCCceeEEEeeCcccccCcccccCCC--chhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCCC
Q psy13409 251 PPGANITNVNTYAVHPGVVDTELSRHFDSI--IPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKADL 328 (330)
Q Consensus 251 ~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~~ 328 (330)
. .+|+||+|+||+++|++....... +........+.++ +.+|+|+|++++++++. .+++|+.|.-.+.
T Consensus 173 --~---~~i~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~dva~~~~~l~~~---~~~~g~~~~i~~~ 242 (248)
T PRK07806 173 --E---KGIGFVVVSGDMIEGTVTATLLNRLNPGAIEARREAAGK--LYTVSEFAAEVARAVTA---PVPSGHIEYVGGA 242 (248)
T ss_pred --c---cCeEEEEeCCccccCchhhhhhccCCHHHHHHHHhhhcc--cCCHHHHHHHHHHHhhc---cccCccEEEecCc
Confidence 5 799999999999999875433211 1111111233344 89999999999999963 4779998765544
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-29 Score=229.91 Aligned_cols=223 Identities=26% Similarity=0.333 Sum_probs=184.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
++++|||||+||||+++++.|+++|++|++++|+....++..+.+... +.++.++.+|++++++++.+++.+.+
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dl~~~~~~~~~~~~~~~ 74 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADH------GGEALVVPTDVSDAEACERLIEAAVA 74 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999988777766666542 45788999999999999999999999
Q ss_pred cCCCeeEEEEcCCCCCCC--CCC-ChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccc
Q psy13409 96 NESAIHLLINNAGVMMCP--RQL-TEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDIN 172 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~~--~~~-~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~ 172 (330)
.++++|++|||+|..... .+. +.+++++.+++|+.+++.+++.+.+.|.+. .++||++||..+..+.
T Consensus 75 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~iv~~sS~~~~~~~--------- 144 (263)
T PRK06181 75 RFGGIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKAS-RGQIVVVSSLAGLTGV--------- 144 (263)
T ss_pred HcCCCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCEEEEEecccccCCC---------
Confidence 889999999999976543 445 778899999999999999999999988654 5899999998876663
Q ss_pred cccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCC
Q psy13409 173 LEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPP 252 (330)
Q Consensus 173 ~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (330)
++...|+++|++++.++++++.++.
T Consensus 145 -----~~~~~Y~~sK~~~~~~~~~l~~~~~-------------------------------------------------- 169 (263)
T PRK06181 145 -----PTRSGYAASKHALHGFFDSLRIELA-------------------------------------------------- 169 (263)
T ss_pred -----CCccHHHHHHHHHHHHHHHHHHHhh--------------------------------------------------
Confidence 6678999999999999999999988
Q ss_pred CCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccc
Q psy13409 253 GANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDK 313 (330)
Q Consensus 253 ~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~ 313 (330)
. .+|++++|.||+|+|++.+....... ......+.+...+.+|+|+|+.+++++..+
T Consensus 170 ~---~~i~~~~i~pg~v~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~dva~~i~~~~~~~ 226 (263)
T PRK06181 170 D---DGVAVTVVCPGFVATDIRKRALDGDG-KPLGKSPMQESKIMSAEECAEAILPAIARR 226 (263)
T ss_pred h---cCceEEEEecCccccCcchhhccccc-cccccccccccCCCCHHHHHHHHHHHhhCC
Confidence 5 79999999999999998765432110 111111122123789999999999999654
|
|
| >COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=229.53 Aligned_cols=235 Identities=33% Similarity=0.431 Sum_probs=187.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhH--HHHHHHHHHHhhcccCCC-CeEEEEEccCCC-HHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEK--AETAADDIRTSLKDVKDA-GEVVIRQLDLSS-LKSVRK 88 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~--l~~~~~~l~~~~~~~~~~-~~v~~i~~Dls~-~~si~~ 88 (330)
.+++|+++||||++|||+++|+.|+++|++|+++.|+.+. .+...+... . .. ..+.+..+|+++ .++++.
T Consensus 2 ~~~~~~ilITGas~GiG~aia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~Dvs~~~~~v~~ 75 (251)
T COG1028 2 DLSGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIK-E-----AGGGRAAAVAADVSDDEESVEA 75 (251)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEcCCCchhhHHHHHHHHH-h-----cCCCcEEEEEecCCCCHHHHHH
Confidence 5789999999999999999999999999999988888664 333333332 1 12 478889999998 999999
Q ss_pred HHHHHHhcCCCeeEEEEcCCCCC---CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCC
Q psy13409 89 CAQEILDNESAIHLLINNAGVMM---CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGS 165 (330)
Q Consensus 89 l~~~i~~~~g~iDvlInnAG~~~---~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~ 165 (330)
+++.+.+.+|++|++|||||... +..+.+.++++.++++|+.+++.+++.+.|.+.++ +||++||..+. +.
T Consensus 76 ~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~---~Iv~isS~~~~-~~-- 149 (251)
T COG1028 76 LVAAAEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKKQ---RIVNISSVAGL-GG-- 149 (251)
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhhC---eEEEECCchhc-CC--
Confidence 99999999999999999999985 44778889999999999999999999888888733 99999999987 53
Q ss_pred CcccccccccCCCc-chhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccc
Q psy13409 166 MHFEDINLEKGYSA-TGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYC 244 (330)
Q Consensus 166 ~~~~~~~~~~~~~~-~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
+. +.+|++||+|+.+|+++++.|+.
T Consensus 150 ------------~~~~~~Y~~sK~al~~~~~~l~~e~~------------------------------------------ 175 (251)
T COG1028 150 ------------PPGQAAYAASKAALIGLTKALALELA------------------------------------------ 175 (251)
T ss_pred ------------CCCcchHHHHHHHHHHHHHHHHHHHh------------------------------------------
Confidence 34 58999999999999999999988
Q ss_pred cccccCCCCCCCCceeEEEeeCcccccCcccccCCCchh-hHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceec
Q psy13409 245 KNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPG-TAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYY 323 (330)
Q Consensus 245 ~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~ 323 (330)
+ .||+|++|+||+++|++.......... ...........+...|++++..+.|+.......+.+|+.+
T Consensus 176 --------~---~gi~v~~v~PG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 244 (251)
T COG1028 176 --------P---RGIRVNAVAPGYIDTPMTAALESAELEALKRLAARIPLGRLGTPEEVAAAVAFLASDEAASYITGQTL 244 (251)
T ss_pred --------h---hCcEEEEEEeccCCCcchhhhhhhhhhHHHHHHhcCCCCCCcCHHHHHHHHHHHcCcchhccccCCEE
Confidence 5 799999999999999998765543200 0011111011147789999999998875533457777765
Q ss_pred c
Q psy13409 324 A 324 (330)
Q Consensus 324 ~ 324 (330)
.
T Consensus 245 ~ 245 (251)
T COG1028 245 P 245 (251)
T ss_pred E
Confidence 4
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-29 Score=223.53 Aligned_cols=239 Identities=23% Similarity=0.316 Sum_probs=193.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh-hHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL-EKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~-~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
.+++|++|||||+|+||.+++++|+++|++|+++.|+. ...+...+.++. .+.++.++.+|+++++++.++++
T Consensus 3 ~~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~D~~~~~~v~~~~~ 76 (249)
T PRK12825 3 SLMGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEA------LGRRAQAVQADVTDKAALEAAVA 76 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHh------cCCceEEEECCcCCHHHHHHHHH
Confidence 45678999999999999999999999999987766654 344445444443 25678899999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 92 EILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
++.+.++.+|++||++|...+. .+.+.+++++.+++|+.+++++++.+++.+.+.+.+++|++||..+..+.
T Consensus 77 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~i~~SS~~~~~~~------ 150 (249)
T PRK12825 77 AAVERFGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRGGRIVNISSVAGLPGW------ 150 (249)
T ss_pred HHHHHcCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECccccCCCC------
Confidence 9988888999999999976543 45678899999999999999999999999988778899999998876553
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
.....|+.+|++++++++.++.++.
T Consensus 151 --------~~~~~y~~sK~~~~~~~~~~~~~~~----------------------------------------------- 175 (249)
T PRK12825 151 --------PGRSNYAAAKAGLVGLTKALARELA----------------------------------------------- 175 (249)
T ss_pred --------CCchHHHHHHHHHHHHHHHHHHHHh-----------------------------------------------
Confidence 5678899999999999999999987
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
. .||+++.|+||++.|++................++++ ..+++|+|+.+.+++..+ ..+++|++|....
T Consensus 176 ---~---~~i~~~~i~pg~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~dva~~~~~~~~~~-~~~~~g~~~~i~~ 244 (249)
T PRK12825 176 ---E---YGITVNMVAPGDIDTDMKEATIEEAREAKDAETPLGR--SGTPEDIARAVAFLCSDA-SDYITGQVIEVTG 244 (249)
T ss_pred ---h---cCeEEEEEEECCccCCccccccchhHHhhhccCCCCC--CcCHHHHHHHHHHHhCcc-ccCcCCCEEEeCC
Confidence 5 7999999999999999876543211111100123333 779999999999998654 5688999987654
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-29 Score=229.87 Aligned_cols=217 Identities=22% Similarity=0.289 Sum_probs=176.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
|++|||||+||||++++++|+++|++|++++|+.+.++... . ..+.++.+|+++.++++++++.+.+.
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~----~--------~~~~~~~~Dl~~~~~~~~~~~~~~~~ 69 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALA----A--------AGFTAVQLDVNDGAALARLAEELEAE 69 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----H--------CCCeEEEeeCCCHHHHHHHHHHHHHh
Confidence 78999999999999999999999999999999987654332 1 13568899999999999999999998
Q ss_pred CCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccc
Q psy13409 97 ESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLE 174 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~ 174 (330)
++++|++|||||.... ..+.+.++++..+++|+.+++.+++.++|.|.+ +.|+||++||..+..+.
T Consensus 70 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-~~g~iv~isS~~~~~~~----------- 137 (274)
T PRK05693 70 HGGLDVLINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRR-SRGLVVNIGSVSGVLVT----------- 137 (274)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhh-cCCEEEEECCccccCCC-----------
Confidence 9999999999997643 356788999999999999999999999999865 35899999999887664
Q ss_pred cCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCCC
Q psy13409 175 KGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGA 254 (330)
Q Consensus 175 ~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (330)
+....|+++|++++.++++++.|++ +
T Consensus 138 ---~~~~~Y~~sK~al~~~~~~l~~e~~--------------------------------------------------~- 163 (274)
T PRK05693 138 ---PFAGAYCASKAAVHALSDALRLELA--------------------------------------------------P- 163 (274)
T ss_pred ---CCccHHHHHHHHHHHHHHHHHHHhh--------------------------------------------------h-
Confidence 5677899999999999999999998 5
Q ss_pred CCCceeEEEeeCcccccCcccccCCCch-----hhHH------HHHH--hhhhhccChHHHHHHHHHhhccc
Q psy13409 255 NITNVNTYAVHPGVVDTELSRHFDSIIP-----GTAW------LYQR--VGGLFIKSPLQGAQTTLYCALDK 313 (330)
Q Consensus 255 ~~~~i~v~~v~pG~v~t~~~~~~~~~~~-----~~~~------~~~~--~~~~~~~~~~e~a~~~~~l~~~~ 313 (330)
.||+|++|+||+|+|++.+....... ...+ .... .......+|+++|+.++..+..+
T Consensus 164 --~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~ 233 (274)
T PRK05693 164 --FGVQVMEVQPGAIASQFASNASREAEQLLAEQSPWWPLREHIQARARASQDNPTPAAEFARQLLAAVQQS 233 (274)
T ss_pred --hCeEEEEEecCccccccccccccchhhcCCCCCccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhCC
Confidence 79999999999999998765432110 0011 0000 11112468999999999988653
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=223.50 Aligned_cols=237 Identities=21% Similarity=0.229 Sum_probs=185.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh-hHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL-EKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~-~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
++++++|||||+|+||++++++|+++|++|++++|+. +..+...+.++.. ....+.++.+|+++++++.++++.
T Consensus 4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~~ 78 (249)
T PRK09135 4 DSAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNAL-----RPGSAAALQADLLDPDALPELVAA 78 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhh-----cCCceEEEEcCCCCHHHHHHHHHH
Confidence 5789999999999999999999999999999999864 4455554444432 234688999999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 93 ILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
+.+.++.+|++|||||...+. .+.+.++++.++++|+.+++.+++++.+.+.++ .+.+++++|..+..+
T Consensus 79 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~-------- 149 (249)
T PRK09135 79 CVAAFGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQ-RGAIVNITDIHAERP-------- 149 (249)
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhC-CeEEEEEeChhhcCC--------
Confidence 999999999999999976432 456778899999999999999999999988654 478888887554333
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
.++...|+.||++++.++++++.++.
T Consensus 150 ------~~~~~~Y~~sK~~~~~~~~~l~~~~~------------------------------------------------ 175 (249)
T PRK09135 150 ------LKGYPVYCAAKAALEMLTRSLALELA------------------------------------------------ 175 (249)
T ss_pred ------CCCchhHHHHHHHHHHHHHHHHHHHC------------------------------------------------
Confidence 36778999999999999999999986
Q ss_pred CCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 251 PPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 251 ~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
++|++++|.||++.|+........ ................+++|+|+++++++.. ..+++|+.|.-..
T Consensus 176 ------~~i~~~~v~pg~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~--~~~~~g~~~~i~~ 243 (249)
T PRK09135 176 ------PEVRVNAVAPGAILWPEDGNSFDE-EARQAILARTPLKRIGTPEDIAEAVRFLLAD--ASFITGQILAVDG 243 (249)
T ss_pred ------CCCeEEEEEeccccCccccccCCH-HHHHHHHhcCCcCCCcCHHHHHHHHHHHcCc--cccccCcEEEECC
Confidence 579999999999999986432211 1111111111112257899999999888854 3467999887654
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-28 Score=221.16 Aligned_cols=218 Identities=28% Similarity=0.333 Sum_probs=183.7
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
+.+.+++++||||+|+||.+++++|+++|++|++++|+.+++.+..+.+.. ..++.++.+|+++.+++..+++
T Consensus 2 ~~~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~-------~~~~~~~~~D~~~~~~~~~~~~ 74 (237)
T PRK07326 2 MSLKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNN-------KGNVLGLAADVRDEADVQRAVD 74 (237)
T ss_pred CCCCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhc-------cCcEEEEEccCCCHHHHHHHHH
Confidence 346789999999999999999999999999999999998877777666543 2568899999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 92 EILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
.+.+.++++|++||++|.... ..+.+.+++++.+++|+.+++.+++++++.+ +++.++||++||..+..+.
T Consensus 75 ~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~-~~~~~~iv~~ss~~~~~~~------ 147 (237)
T PRK07326 75 AIVAAFGGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPAL-KRGGGYIINISSLAGTNFF------ 147 (237)
T ss_pred HHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHH-HHCCeEEEEECChhhccCC------
Confidence 999988999999999997653 2567888999999999999999999999988 4456899999998765543
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
.....|+++|++++.++++++.++.
T Consensus 148 --------~~~~~y~~sk~a~~~~~~~~~~~~~----------------------------------------------- 172 (237)
T PRK07326 148 --------AGGAAYNASKFGLVGFSEAAMLDLR----------------------------------------------- 172 (237)
T ss_pred --------CCCchHHHHHHHHHHHHHHHHHHhc-----------------------------------------------
Confidence 5667899999999999999999998
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccc
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKC 315 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~ 315 (330)
. .|+++++|+||++.|++........ .....+++|+|+.+++++..+..
T Consensus 173 ---~---~gi~v~~v~pg~~~t~~~~~~~~~~-----------~~~~~~~~d~a~~~~~~l~~~~~ 221 (237)
T PRK07326 173 ---Q---YGIKVSTIMPGSVATHFNGHTPSEK-----------DAWKIQPEDIAQLVLDLLKMPPR 221 (237)
T ss_pred ---c---cCcEEEEEeeccccCcccccccchh-----------hhccCCHHHHHHHHHHHHhCCcc
Confidence 5 7999999999999998765432110 00136899999999999977643
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=228.68 Aligned_cols=222 Identities=21% Similarity=0.268 Sum_probs=179.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
.|++|||||+|+||++++++|+++|++|+++.|+.+.+++..+. .+.++.++.+|+++.++++++++++.+
T Consensus 2 ~k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~---------~~~~~~~~~~D~~~~~~~~~~~~~~~~ 72 (276)
T PRK06482 2 SKTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKAR---------YGDRLWVLQLDVTDSAAVRAVVDRAFA 72 (276)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh---------ccCceEEEEccCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999998765544332 134688999999999999999999988
Q ss_pred cCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccccc
Q psy13409 96 NESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINL 173 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~ 173 (330)
.++++|++|||||..... .+.+.+++++.+++|+.+++.+++.++|.|.+++.++||++||..+..+.
T Consensus 73 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~---------- 142 (276)
T PRK06482 73 ALGRIDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSSEGGQIAY---------- 142 (276)
T ss_pred HcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCcccccCC----------
Confidence 889999999999987543 56678889999999999999999999999988778999999998765553
Q ss_pred ccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCC
Q psy13409 174 EKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPG 253 (330)
Q Consensus 174 ~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (330)
+....|++||++++.++++++.++. .
T Consensus 143 ----~~~~~Y~~sK~a~~~~~~~l~~~~~--------------------------------------------------~ 168 (276)
T PRK06482 143 ----PGFSLYHATKWGIEGFVEAVAQEVA--------------------------------------------------P 168 (276)
T ss_pred ----CCCchhHHHHHHHHHHHHHHHHHhh--------------------------------------------------c
Confidence 5678999999999999999999987 5
Q ss_pred CCCCceeEEEeeCcccccCcccccCCCc-----hhh--HHHHHHhh--h-hhccChHHHHHHHHHhhccc
Q psy13409 254 ANITNVNTYAVHPGVVDTELSRHFDSII-----PGT--AWLYQRVG--G-LFIKSPLQGAQTTLYCALDK 313 (330)
Q Consensus 254 ~~~~~i~v~~v~pG~v~t~~~~~~~~~~-----~~~--~~~~~~~~--~-~~~~~~~e~a~~~~~l~~~~ 313 (330)
.||+++.|+||.+.|++........ ... ......+. . ....+++|++++++.++..+
T Consensus 169 ---~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~a~~~~~~~~ 235 (276)
T PRK06482 169 ---FGIEFTIVEPGPARTNFGAGLDRGAPLDAYDDTPVGDLRRALADGSFAIPGDPQKMVQAMIASADQT 235 (276)
T ss_pred ---cCcEEEEEeCCccccCCcccccccCCCccccchhhHHHHHHHhhccCCCCCCHHHHHHHHHHHHcCC
Confidence 7999999999999999865432211 000 11111111 1 11368999999999998543
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=226.10 Aligned_cols=239 Identities=25% Similarity=0.300 Sum_probs=192.0
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
.+++|+++||||+|+||++++++|+++|++|++++|+.+.+++..+... ..++.++.+|+++++++..++++
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~--------~~~~~~~~~D~~~~~~~~~~~~~ 79 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLP--------GAKVTATVADVADPAQVERVFDT 79 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh--------cCceEEEEccCCCHHHHHHHHHH
Confidence 4789999999999999999999999999999999999876665544432 22678899999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCC---CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCC-CeEEEEcCCCcccCCCCCcc
Q psy13409 93 ILDNESAIHLLINNAGVMMC---PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAP-ARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~---~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~-g~IV~iSS~~~~~~~~~~~~ 168 (330)
+.+.++++|++||++|...+ ....+.+++.+++++|+.+++.+++.+++.+...+. ++||++||..+..+.
T Consensus 80 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~~~~~~----- 154 (264)
T PRK12829 80 AVERFGGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVAGRLGY----- 154 (264)
T ss_pred HHHHhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEecccccccCC-----
Confidence 99988999999999998733 246678899999999999999999999998877665 778999988776663
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
+....|+.+|++++.+++.+++++.
T Consensus 155 ---------~~~~~y~~~K~a~~~~~~~l~~~~~---------------------------------------------- 179 (264)
T PRK12829 155 ---------PGRTPYAASKWAVVGLVKSLAIELG---------------------------------------------- 179 (264)
T ss_pred ---------CCCchhHHHHHHHHHHHHHHHHHHh----------------------------------------------
Confidence 5667899999999999999999987
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCC------chhhH---HHHHHhhhhhccChHHHHHHHHHhhccccccccC
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSI------IPGTA---WLYQRVGGLFIKSPLQGAQTTLYCALDKKCERET 319 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~------~~~~~---~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~ 319 (330)
. .++++++|+||++.|++....... ..... .........++.+++|+|+++++++++ ....++
T Consensus 180 ----~---~~i~~~~l~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~l~~~-~~~~~~ 251 (264)
T PRK12829 180 ----P---LGIRVNAILPGIVRGPRMRRVIEARAQQLGIGLDEMEQEYLEKISLGRMVEPEDIAATALFLASP-AARYIT 251 (264)
T ss_pred ----h---cCeEEEEEecCCcCChHHHHHhhhhhhccCCChhHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCc-cccCcc
Confidence 5 799999999999999976433211 00011 111111222378999999999999854 345789
Q ss_pred ceecccCC
Q psy13409 320 GLYYAKAD 327 (330)
Q Consensus 320 G~~~~~~~ 327 (330)
|++|....
T Consensus 252 g~~~~i~~ 259 (264)
T PRK12829 252 GQAISVDG 259 (264)
T ss_pred CcEEEeCC
Confidence 99886554
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-29 Score=256.64 Aligned_cols=217 Identities=25% Similarity=0.325 Sum_probs=186.3
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
.+++||+++||||++|||++++++|+++|++|++++|+.+.+++..+++... +.++.++.+|+++.++++++++
T Consensus 367 ~~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~~~~~~~ 440 (657)
T PRK07201 367 GPLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAK------GGTAHAYTCDLTDSAAVDHTVK 440 (657)
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEecCCCHHHHHHHHH
Confidence 3688999999999999999999999999999999999998888887777552 5678999999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCCC--CC--CChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCc
Q psy13409 92 EILDNESAIHLLINNAGVMMCP--RQ--LTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~--~~--~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~ 167 (330)
++.+.++++|++|||||..... .+ .+.++++.++++|+.+++.+++.++|.|.+++.|+||++||.++..+.
T Consensus 441 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~---- 516 (657)
T PRK07201 441 DILAEHGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRFGHVVNVSSIGVQTNA---- 516 (657)
T ss_pred HHHHhcCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCCC----
Confidence 9999999999999999975432 11 125789999999999999999999999998888999999998876654
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
+..+.|++||+++++|+++++.|+.
T Consensus 517 ----------~~~~~Y~~sK~a~~~~~~~la~e~~--------------------------------------------- 541 (657)
T PRK07201 517 ----------PRFSAYVASKAALDAFSDVAASETL--------------------------------------------- 541 (657)
T ss_pred ----------CCcchHHHHHHHHHHHHHHHHHHHH---------------------------------------------
Confidence 5678899999999999999999998
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhcc
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALD 312 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~ 312 (330)
+ .||+||+|+||+|+|++....... ......+|+++|+.++..+..
T Consensus 542 -----~---~~i~v~~v~pg~v~T~~~~~~~~~-----------~~~~~~~~~~~a~~i~~~~~~ 587 (657)
T PRK07201 542 -----S---DGITFTTIHMPLVRTPMIAPTKRY-----------NNVPTISPEEAADMVVRAIVE 587 (657)
T ss_pred -----h---hCCcEEEEECCcCcccccCccccc-----------cCCCCCCHHHHHHHHHHHHHh
Confidence 5 799999999999999987543110 111257899999999997644
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-29 Score=223.51 Aligned_cols=221 Identities=23% Similarity=0.238 Sum_probs=175.0
Q ss_pred EEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhcCCC
Q psy13409 20 IVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESA 99 (330)
Q Consensus 20 LITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~~g~ 99 (330)
+||||++|||++++++|+++|++|++++|+.+++++..+.++ .+.++.++.+|+++++++.+++++ .++
T Consensus 1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~-------~~~~~~~~~~Dl~~~~~~~~~~~~----~~~ 69 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALG-------GGAPVRTAALDITDEAAVDAFFAE----AGP 69 (230)
T ss_pred CeecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh-------cCCceEEEEccCCCHHHHHHHHHh----cCC
Confidence 699999999999999999999999999999877766655543 145688999999999999888775 378
Q ss_pred eeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccccCC
Q psy13409 100 IHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGY 177 (330)
Q Consensus 100 iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~~ 177 (330)
+|++|||+|.... ..+.+.+++++++++|+.+++.+++ .+.+ .+.|+||++||..+..+.
T Consensus 70 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~--~~~~--~~~g~iv~~ss~~~~~~~-------------- 131 (230)
T PRK07041 70 FDHVVITAADTPGGPVRALPLAAAQAAMDSKFWGAYRVAR--AARI--APGGSLTFVSGFAAVRPS-------------- 131 (230)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHh--hhhh--cCCeEEEEECchhhcCCC--------------
Confidence 9999999998653 2566889999999999999999999 3444 346899999999876664
Q ss_pred CcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCCCCCC
Q psy13409 178 SATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGANIT 257 (330)
Q Consensus 178 ~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (330)
+....|+++|+++++++++++.|+. .
T Consensus 132 ~~~~~Y~~sK~a~~~~~~~la~e~~------------------------------------------------------~ 157 (230)
T PRK07041 132 ASGVLQGAINAALEALARGLALELA------------------------------------------------------P 157 (230)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHhh------------------------------------------------------C
Confidence 6778999999999999999999986 3
Q ss_pred ceeEEEeeCcccccCcccccCCCc--hhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 258 NVNTYAVHPGVVDTELSRHFDSII--PGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 258 ~i~v~~v~pG~v~t~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
|||++|+||+++|++........ .............++.+|+|+|+++++|+++ .+++|+.|.-.+
T Consensus 158 -irv~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~---~~~~G~~~~v~g 225 (230)
T PRK07041 158 -VRVNTVSPGLVDTPLWSKLAGDAREAMFAAAAERLPARRVGQPEDVANAILFLAAN---GFTTGSTVLVDG 225 (230)
T ss_pred -ceEEEEeecccccHHHHhhhccchHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhcC---CCcCCcEEEeCC
Confidence 99999999999999876432211 1111112212222368899999999999964 378898876543
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-28 Score=221.82 Aligned_cols=238 Identities=25% Similarity=0.261 Sum_probs=192.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
+|++|||||+|+||++++++|+++|++|++++|+.+..+++.+++.. .+.++.++.+|+++.++++++++.+.+
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~------~~~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATD------AGGSVIYLVADVTKEDEIADMIAAAAA 74 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh------cCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999998877777766654 246789999999999999999999998
Q ss_pred cCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccccc
Q psy13409 96 NESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINL 173 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~ 173 (330)
.++.+|++||++|..... .+.+.++++.++++|+.+++.+++.+++.|.+.+.+++|++||..+..+.
T Consensus 75 ~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~~~---------- 144 (255)
T TIGR01963 75 EFGGLDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWGRIINIASAHGLVAS---------- 144 (255)
T ss_pred hcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcCCC----------
Confidence 888999999999976532 45677889999999999999999999999988777899999998766553
Q ss_pred ccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCC
Q psy13409 174 EKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPG 253 (330)
Q Consensus 174 ~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (330)
+....|+.+|++++.++++++.++. .
T Consensus 145 ----~~~~~y~~sk~a~~~~~~~~~~~~~--------------------------------------------------~ 170 (255)
T TIGR01963 145 ----PFKSAYVAAKHGLIGLTKVLALEVA--------------------------------------------------A 170 (255)
T ss_pred ----CCCchhHHHHHHHHHHHHHHHHHhh--------------------------------------------------h
Confidence 5678899999999999999999987 5
Q ss_pred CCCCceeEEEeeCcccccCcccccCCC------chhhHH----HHHHhhhhhccChHHHHHHHHHhhccccccccCceec
Q psy13409 254 ANITNVNTYAVHPGVVDTELSRHFDSI------IPGTAW----LYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYY 323 (330)
Q Consensus 254 ~~~~~i~v~~v~pG~v~t~~~~~~~~~------~~~~~~----~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~ 323 (330)
.+|+++.|+||++.|++....... ...... .........+.+++|+|++++++++++ ...++|++|
T Consensus 171 ---~~i~v~~i~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~-~~~~~g~~~ 246 (255)
T TIGR01963 171 ---HGITVNAICPGYVRTPLVEKQIADQAKTRGIPEEQVIREVMLPGQPTKRFVTVDEVAETALFLASDA-AAGITGQAI 246 (255)
T ss_pred ---cCeEEEEEecCccccHHHHHHHHhhhcccCCCchHHHHHHHHccCccccCcCHHHHHHHHHHHcCcc-ccCccceEE
Confidence 799999999999999875332110 000001 111112223789999999999998663 346789988
Q ss_pred ccCC
Q psy13409 324 AKAD 327 (330)
Q Consensus 324 ~~~~ 327 (330)
....
T Consensus 247 ~~~~ 250 (255)
T TIGR01963 247 VLDG 250 (255)
T ss_pred EEcC
Confidence 7653
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=223.73 Aligned_cols=223 Identities=22% Similarity=0.232 Sum_probs=172.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH-HHh
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE-ILD 95 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~-i~~ 95 (330)
++++||||+||||++++++|+++|++|++++|+.... . ... .+.++.++.+|+++++++++++.+ +.+
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~~--~----~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 70 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHPS--L----AAA-----AGERLAEVELDLSDAAAAAAWLAGDLLA 70 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCCCEEEEEecCcchh--h----hhc-----cCCeEEEEEeccCCHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999986531 1 111 256788999999999999998776 544
Q ss_pred cC---CCeeEEEEcCCCCCC---CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 96 NE---SAIHLLINNAGVMMC---PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 96 ~~---g~iDvlInnAG~~~~---~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
.+ +.+|++|||+|...+ ..+.+.++++..+++|+.+++.+++.+.+.|.+++.++||++||..+..+.
T Consensus 71 ~~~~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~------ 144 (243)
T PRK07023 71 AFVDGASRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAERRILHISSGAARNAY------ 144 (243)
T ss_pred HhccCCCceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCCCEEEEEeChhhcCCC------
Confidence 33 479999999998643 356688999999999999999999999999988777999999998776553
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
+++..|+++|+++++++++++.+ .
T Consensus 145 --------~~~~~Y~~sK~a~~~~~~~~~~~-~----------------------------------------------- 168 (243)
T PRK07023 145 --------AGWSVYCATKAALDHHARAVALD-A----------------------------------------------- 168 (243)
T ss_pred --------CCchHHHHHHHHHHHHHHHHHhc-C-----------------------------------------------
Confidence 67889999999999999999998 5
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCC----chhhHHHHHHhhhhhccChHHHHHH-HHHhhccccccccC
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSI----IPGTAWLYQRVGGLFIKSPLQGAQT-TLYCALDKKCERET 319 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~e~a~~-~~~l~~~~~~~~~~ 319 (330)
. .||++++|+||+++|++....... ..............++.+|+|+|+. +.+|+ ++.....+
T Consensus 169 ---~---~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~l~-~~~~~~~~ 236 (243)
T PRK07023 169 ---N---RALRIVSLAPGVVDTGMQATIRATDEERFPMRERFRELKASGALSTPEDAARRLIAYLL-SDDFGSTP 236 (243)
T ss_pred ---C---CCcEEEEecCCccccHHHHHHHhcccccchHHHHHHHhhhcCCCCCHHHHHHHHHHHHh-ccccCCCC
Confidence 4 799999999999999986532111 1111111112222338899999995 45554 44433333
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-28 Score=221.94 Aligned_cols=203 Identities=22% Similarity=0.237 Sum_probs=169.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
++++||||++|||++++++|+++|++|++++|+.++++++.+. ..++.++.||++++++++++++++..
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~----------~~~~~~~~~D~~~~~~~~~~~~~~~~- 70 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQ----------SANIFTLAFDVTDHPGTKAALSQLPF- 70 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh----------cCCCeEEEeeCCCHHHHHHHHHhccc-
Confidence 7899999999999999999999999999999998765544321 24578899999999999999887632
Q ss_pred CCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccc
Q psy13409 97 ESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLE 174 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~ 174 (330)
.+|++|||||..... .+.+.+++++++++|+.+++++++.+.|.|.+ +++||++||..+..+.
T Consensus 71 --~~d~~i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~~~iv~isS~~~~~~~----------- 135 (240)
T PRK06101 71 --IPELWIFNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSC--GHRVVIVGSIASELAL----------- 135 (240)
T ss_pred --CCCEEEEcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCeEEEEechhhccCC-----------
Confidence 479999999965322 35688899999999999999999999999853 4789999998877664
Q ss_pred cCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCCC
Q psy13409 175 KGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGA 254 (330)
Q Consensus 175 ~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (330)
+....|+++|+++++++++++.|++ .
T Consensus 136 ---~~~~~Y~asK~a~~~~~~~l~~e~~--------------------------------------------------~- 161 (240)
T PRK06101 136 ---PRAEAYGASKAAVAYFARTLQLDLR--------------------------------------------------P- 161 (240)
T ss_pred ---CCCchhhHHHHHHHHHHHHHHHHHH--------------------------------------------------h-
Confidence 6677999999999999999999998 5
Q ss_pred CCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccc
Q psy13409 255 NITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDK 313 (330)
Q Consensus 255 ~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~ 313 (330)
.||++++|+||+|+|++........ +.+.+|+|+|+.++..+..+
T Consensus 162 --~gi~v~~v~pg~i~t~~~~~~~~~~------------~~~~~~~~~a~~i~~~i~~~ 206 (240)
T PRK06101 162 --KGIEVVTVFPGFVATPLTDKNTFAM------------PMIITVEQASQEIRAQLARG 206 (240)
T ss_pred --cCceEEEEeCCcCCCCCcCCCCCCC------------CcccCHHHHHHHHHHHHhcC
Confidence 7999999999999999866432111 11468999999999888664
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-28 Score=219.39 Aligned_cols=231 Identities=30% Similarity=0.413 Sum_probs=188.4
Q ss_pred EEEEcCCCchHHHHHHHHHHCCCEEEEEecCh-hHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhcC
Q psy13409 19 AIVTGSNTGIGKCTANELAKRGARVIMACRSL-EKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNE 97 (330)
Q Consensus 19 aLITGas~gIG~aia~~L~~~G~~Vil~~R~~-~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~~ 97 (330)
+||||++++||.+++++|+++|++|++++|+. +.++...+.++. .+.++.++.+|++++++++++++.+.+.+
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 74 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKA------YGVKALGVVCDVSDREDVKAVVEEIEEEL 74 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHh------cCCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999998875 444455555543 24578899999999999999999998988
Q ss_pred CCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccccccc
Q psy13409 98 SAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEK 175 (330)
Q Consensus 98 g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~ 175 (330)
+++|++||++|..... .+.+.+++++.+++|+.+.+.+++.+++.+.+.+.+++|++||.++.++.
T Consensus 75 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~g~------------ 142 (239)
T TIGR01830 75 GPIDILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVVGLMGN------------ 142 (239)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCccccCCC------------
Confidence 9999999999986432 45677889999999999999999999999877777899999998887774
Q ss_pred CCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCCCC
Q psy13409 176 GYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGAN 255 (330)
Q Consensus 176 ~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (330)
+.+..|+++|++++.+++.++.++. .
T Consensus 143 --~~~~~y~~~k~a~~~~~~~l~~~~~--------------------------------------------------~-- 168 (239)
T TIGR01830 143 --AGQANYAASKAGVIGFTKSLAKELA--------------------------------------------------S-- 168 (239)
T ss_pred --CCCchhHHHHHHHHHHHHHHHHHHh--------------------------------------------------h--
Confidence 5678899999999999999999987 5
Q ss_pred CCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceeccc
Q psy13409 256 ITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAK 325 (330)
Q Consensus 256 ~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~ 325 (330)
+|++++.|+||+++|++....... ............+..+++|+|+.+++++.+ ...+.+|++++.
T Consensus 169 -~g~~~~~i~pg~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~g~~~~~ 234 (239)
T TIGR01830 169 -RNITVNAVAPGFIDTDMTDKLSEK--VKKKILSQIPLGRFGTPEEVANAVAFLASD-EASYITGQVIHV 234 (239)
T ss_pred -cCeEEEEEEECCCCChhhhhcChH--HHHHHHhcCCcCCCcCHHHHHHHHHHHhCc-ccCCcCCCEEEe
Confidence 799999999999999876543211 111111111122378999999999999855 445789998875
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-28 Score=251.71 Aligned_cols=240 Identities=23% Similarity=0.282 Sum_probs=197.2
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
..++||++|||||+||||+++++.|+++|++|++++|+.+.++...+.+.. ..++.++.+|++++++++++++
T Consensus 418 ~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~-------~~~v~~v~~Dvtd~~~v~~~~~ 490 (681)
T PRK08324 418 KPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGG-------PDRALGVACDVTDEAAVQAAFE 490 (681)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhc-------cCcEEEEEecCCCHHHHHHHHH
Confidence 357899999999999999999999999999999999999887777665543 1478899999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCC-CeEEEEcCCCcccCCCCCcc
Q psy13409 92 EILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAP-ARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~-g~IV~iSS~~~~~~~~~~~~ 168 (330)
++.+.++.+|++|||||..... .+.+.++|+..+++|+.+++.+++.+.+.|.+++. |+||++||..+..+.
T Consensus 491 ~~~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~~~~~~----- 565 (681)
T PRK08324 491 EAALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKNAVNPG----- 565 (681)
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCccccCCC-----
Confidence 9999999999999999976543 56788999999999999999999999999988764 899999998887764
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
++..+|+++|++++.++++++.+++
T Consensus 566 ---------~~~~~Y~asKaa~~~l~~~la~e~~---------------------------------------------- 590 (681)
T PRK08324 566 ---------PNFGAYGAAKAAELHLVRQLALELG---------------------------------------------- 590 (681)
T ss_pred ---------CCcHHHHHHHHHHHHHHHHHHHHhc----------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred cCCCCCCCCceeEEEeeCccc--ccCcccccCCC-------chhh---HHHHHHhhhhhccChHHHHHHHHHhhcccccc
Q psy13409 249 FHPPGANITNVNTYAVHPGVV--DTELSRHFDSI-------IPGT---AWLYQRVGGLFIKSPLQGAQTTLYCALDKKCE 316 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v--~t~~~~~~~~~-------~~~~---~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~ 316 (330)
. .||+||+|+||.| +|++....... .... +............+++|+|+++++++++ ...
T Consensus 591 ----~---~gIrvn~v~Pg~v~~~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~v~~~DvA~a~~~l~s~-~~~ 662 (681)
T PRK08324 591 ----P---DGIRVNGVNPDAVVRGSGIWTGEWIEARAAAYGLSEEELEEFYRARNLLKREVTPEDVAEAVVFLASG-LLS 662 (681)
T ss_pred ----c---cCeEEEEEeCceeecCCccccchhhhhhhhhccCChHHHHHHHHhcCCcCCccCHHHHHHHHHHHhCc-ccc
Confidence 5 7999999999999 88865432110 0000 1111111112378999999999999864 456
Q ss_pred ccCceecccC
Q psy13409 317 RETGLYYAKA 326 (330)
Q Consensus 317 ~~~G~~~~~~ 326 (330)
..||+.+...
T Consensus 663 ~~tG~~i~vd 672 (681)
T PRK08324 663 KTTGAIITVD 672 (681)
T ss_pred CCcCCEEEEC
Confidence 8899988654
|
|
| >COG0623 FabI Enoyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-28 Score=215.56 Aligned_cols=236 Identities=14% Similarity=0.105 Sum_probs=202.1
Q ss_pred CCCCCCEEEEEcCC--CchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSN--TGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 12 ~~~~gk~aLITGas--~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
..|+||++||+|-. +.|++.||+.|.++|+++.++..++ ++++..+++.+. -..-.+++||+++.++++++
T Consensus 2 g~L~GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e-~l~krv~~la~~------~~s~~v~~cDV~~d~~i~~~ 74 (259)
T COG0623 2 GLLEGKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGE-RLEKRVEELAEE------LGSDLVLPCDVTNDESIDAL 74 (259)
T ss_pred CccCCceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccH-HHHHHHHHHHhh------ccCCeEEecCCCCHHHHHHH
Confidence 46899999999954 8999999999999999999999997 566666666553 22356799999999999999
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCCC------CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCC
Q psy13409 90 AQEILDNESAIHLLINNAGVMMCP------RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGD 163 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~~------~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~ 163 (330)
+.++.+.+|++|.+||+.|+.+.. .+++.+.|...+++..++...+.+++.|+|.. +|+||.++-..+.+-.
T Consensus 75 f~~i~~~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~--ggSiltLtYlgs~r~v 152 (259)
T COG0623 75 FATIKKKWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNN--GGSILTLTYLGSERVV 152 (259)
T ss_pred HHHHHHhhCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCC--CCcEEEEEeccceeec
Confidence 999999999999999999988632 46899999999999999999999999999965 7999999988876664
Q ss_pred CCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccc
Q psy13409 164 GSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHY 243 (330)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (330)
|.+...+.+|+++++-+|+||.+++
T Consensus 153 --------------PnYNvMGvAKAaLEasvRyLA~dlG----------------------------------------- 177 (259)
T COG0623 153 --------------PNYNVMGVAKAALEASVRYLAADLG----------------------------------------- 177 (259)
T ss_pred --------------CCCchhHHHHHHHHHHHHHHHHHhC-----------------------------------------
Confidence 7788999999999999999999999
Q ss_pred ccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceec
Q psy13409 244 CKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYY 323 (330)
Q Consensus 244 ~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~ 323 (330)
+ .|||||+|+.|+|.|=.............+.....+.++..++|||+.+.+||+++ .++.+||+.+
T Consensus 178 ---------~---~gIRVNaISAGPIrTLAasgI~~f~~~l~~~e~~aPl~r~vt~eeVG~tA~fLlSd-LssgiTGei~ 244 (259)
T COG0623 178 ---------K---EGIRVNAISAGPIRTLAASGIGDFRKMLKENEANAPLRRNVTIEEVGNTAAFLLSD-LSSGITGEII 244 (259)
T ss_pred ---------c---cCeEEeeecccchHHHHhhccccHHHHHHHHHhhCCccCCCCHHHhhhhHHHHhcc-hhcccccceE
Confidence 6 79999999999999987777666555556655444444489999999999999976 7889999976
Q ss_pred c
Q psy13409 324 A 324 (330)
Q Consensus 324 ~ 324 (330)
-
T Consensus 245 y 245 (259)
T COG0623 245 Y 245 (259)
T ss_pred E
Confidence 4
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-27 Score=216.81 Aligned_cols=231 Identities=18% Similarity=0.196 Sum_probs=185.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
++++|+++||||+++||.++++.|+++|++|++++|+.+++++..+.+.. ..++.++.+|+++++++++++++
T Consensus 2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~~ 74 (238)
T PRK05786 2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSK-------YGNIHYVVGDVSSTESARNVIEK 74 (238)
T ss_pred CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-------cCCeEEEECCCCCHHHHHHHHHH
Confidence 57899999999999999999999999999999999998877665555432 23688899999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccc
Q psy13409 93 ILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDIN 172 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~ 172 (330)
+...++.+|.+|+++|........+.++++.++++|+.+++.+++.++|.+.+ .+++|++||..+..+.
T Consensus 75 ~~~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~--~~~iv~~ss~~~~~~~--------- 143 (238)
T PRK05786 75 AAKVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKE--GSSIVLVSSMSGIYKA--------- 143 (238)
T ss_pred HHHHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhc--CCEEEEEecchhcccC---------
Confidence 88888899999999997543322334888999999999999999999998854 4899999998764431
Q ss_pred cccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCC
Q psy13409 173 LEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPP 252 (330)
Q Consensus 173 ~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (330)
.+....|+++|+++..++++++.++.
T Consensus 144 ----~~~~~~Y~~sK~~~~~~~~~~~~~~~-------------------------------------------------- 169 (238)
T PRK05786 144 ----SPDQLSYAVAKAGLAKAVEILASELL-------------------------------------------------- 169 (238)
T ss_pred ----CCCchHHHHHHHHHHHHHHHHHHHHh--------------------------------------------------
Confidence 24567899999999999999999987
Q ss_pred CCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 253 GANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 253 ~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
. .||++++|+||+|.|++..... . + .....+. ...+++|+|+.+++++.+ .+.+.+|+++...
T Consensus 170 ~---~gi~v~~i~pg~v~~~~~~~~~----~-~-~~~~~~~-~~~~~~~va~~~~~~~~~-~~~~~~g~~~~~~ 232 (238)
T PRK05786 170 G---RGIRVNGIAPTTISGDFEPERN----W-K-KLRKLGD-DMAPPEDFAKVIIWLLTD-EADWVDGVVIPVD 232 (238)
T ss_pred h---cCeEEEEEecCccCCCCCchhh----h-h-hhccccC-CCCCHHHHHHHHHHHhcc-cccCccCCEEEEC
Confidence 5 7999999999999998642210 0 0 0111111 257999999999999865 5567889876543
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-28 Score=215.26 Aligned_cols=195 Identities=18% Similarity=0.194 Sum_probs=162.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
++++||||++|||++++++|+++ ++|++++|+.. .+.||+++++++++++++
T Consensus 1 ~~vlItGas~giG~~la~~l~~~-~~vi~~~r~~~-----------------------~~~~D~~~~~~~~~~~~~---- 52 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR-HEVITAGRSSG-----------------------DVQVDITDPASIRALFEK---- 52 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCCC-----------------------ceEecCCChHHHHHHHHh----
Confidence 37999999999999999999999 99999998742 367999999999888765
Q ss_pred CCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccc
Q psy13409 97 ESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLE 174 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~ 174 (330)
.+++|++|||||..... .+.+.++|++.+++|+.+++++++.++|.|.+ .++|+++||..+..+.
T Consensus 53 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~g~iv~iss~~~~~~~----------- 119 (199)
T PRK07578 53 VGKVDAVVSAAGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLND--GGSFTLTSGILSDEPI----------- 119 (199)
T ss_pred cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCeEEEEcccccCCCC-----------
Confidence 47899999999975432 46788899999999999999999999999864 4899999998876664
Q ss_pred cCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCCC
Q psy13409 175 KGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGA 254 (330)
Q Consensus 175 ~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (330)
+....|+++|+|+++|+++++.|+.
T Consensus 120 ---~~~~~Y~~sK~a~~~~~~~la~e~~---------------------------------------------------- 144 (199)
T PRK07578 120 ---PGGASAATVNGALEGFVKAAALELP---------------------------------------------------- 144 (199)
T ss_pred ---CCchHHHHHHHHHHHHHHHHHHHcc----------------------------------------------------
Confidence 6788999999999999999999984
Q ss_pred CCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecc
Q psy13409 255 NITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYA 324 (330)
Q Consensus 255 ~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~ 324 (330)
+||+||+|+||+++|++..... .+......+|+|+|+.++++++. ..+|+.|.
T Consensus 145 --~gi~v~~i~Pg~v~t~~~~~~~-----------~~~~~~~~~~~~~a~~~~~~~~~----~~~g~~~~ 197 (199)
T PRK07578 145 --RGIRINVVSPTVLTESLEKYGP-----------FFPGFEPVPAARVALAYVRSVEG----AQTGEVYK 197 (199)
T ss_pred --CCeEEEEEcCCcccCchhhhhh-----------cCCCCCCCCHHHHHHHHHHHhcc----ceeeEEec
Confidence 6899999999999998642111 01111257899999999999853 57898775
|
|
| >KOG1014|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=220.90 Aligned_cols=211 Identities=30% Similarity=0.371 Sum_probs=180.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
-.|+|++|||||.|||+++|++|+++|.+|++++|+.++|+.+.+++.+.+ +..+.++.+|+++.+++..-+.+.
T Consensus 47 ~~g~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~-----~vev~~i~~Dft~~~~~ye~i~~~ 121 (312)
T KOG1014|consen 47 KLGSWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKY-----KVEVRIIAIDFTKGDEVYEKLLEK 121 (312)
T ss_pred hcCCEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHh-----CcEEEEEEEecCCCchhHHHHHHH
Confidence 456999999999999999999999999999999999999999999999885 578999999999988633332222
Q ss_pred HhcCCCeeEEEEcCCCCCC-C---CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 94 LDNESAIHLLINNAGVMMC-P---RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~-~---~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
.+. ..+-+||||+|.... + .+.+...+++.+++|..+...+++.++|.|.++++|-||++||.+|..+.
T Consensus 122 l~~-~~VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G~IvnigS~ag~~p~------ 194 (312)
T KOG1014|consen 122 LAG-LDVGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKGIIVNIGSFAGLIPT------ 194 (312)
T ss_pred hcC-CceEEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCceEEEeccccccccC------
Confidence 222 368899999999872 2 46677788999999999999999999999999999999999999998885
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
+.++.|+++|+.+..|+++|++|++
T Consensus 195 --------p~~s~ysasK~~v~~~S~~L~~Ey~----------------------------------------------- 219 (312)
T KOG1014|consen 195 --------PLLSVYSASKAFVDFFSRCLQKEYE----------------------------------------------- 219 (312)
T ss_pred --------hhHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------------
Confidence 8899999999999999999999999
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhh
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCA 310 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~ 310 (330)
. .||.|-+|.|++|.|++....... .+..+|+..|...+...
T Consensus 220 ---~---~gI~Vq~v~p~~VaTkm~~~~~~s-------------l~~ps~~tfaksal~ti 261 (312)
T KOG1014|consen 220 ---S---KGIFVQSVIPYLVATKMAKYRKPS-------------LFVPSPETFAKSALNTI 261 (312)
T ss_pred ---h---cCeEEEEeehhheeccccccCCCC-------------CcCcCHHHHHHHHHhhc
Confidence 5 899999999999999998765421 12456777777766654
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-27 Score=212.41 Aligned_cols=201 Identities=20% Similarity=0.202 Sum_probs=164.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
|+++||||++|||++++++|+++|++|++++|+....+++. + ..++.++.+|++|+++++++++.+.+
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~----~-------~~~~~~~~~D~~d~~~~~~~~~~~~~- 69 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQ----A-------LPGVHIEKLDMNDPASLDQLLQRLQG- 69 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHH----h-------ccccceEEcCCCCHHHHHHHHHHhhc-
Confidence 68999999999999999999999999999999987654331 1 12467789999999999999988754
Q ss_pred CCCeeEEEEcCCCCCC----CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccc
Q psy13409 97 ESAIHLLINNAGVMMC----PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDIN 172 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~----~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~ 172 (330)
+++|++|||||...+ ..+.+.++++..+++|+.+++.+++.+++.+.+ +.+.++++||..+..+.
T Consensus 70 -~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~~iv~~ss~~g~~~~--------- 138 (225)
T PRK08177 70 -QRFDLLFVNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRP-GQGVLAFMSSQLGSVEL--------- 138 (225)
T ss_pred -CCCCEEEEcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhh-cCCEEEEEccCcccccc---------
Confidence 479999999998643 256788899999999999999999999998864 34889999997765442
Q ss_pred cccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCC
Q psy13409 173 LEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPP 252 (330)
Q Consensus 173 ~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (330)
.+...+..|+++|++++.|+++++.|+.
T Consensus 139 --~~~~~~~~Y~~sK~a~~~~~~~l~~e~~-------------------------------------------------- 166 (225)
T PRK08177 139 --PDGGEMPLYKASKAALNSMTRSFVAELG-------------------------------------------------- 166 (225)
T ss_pred --CCCCCccchHHHHHHHHHHHHHHHHHhh--------------------------------------------------
Confidence 1124566899999999999999999998
Q ss_pred CCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhcc
Q psy13409 253 GANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALD 312 (330)
Q Consensus 253 ~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~ 312 (330)
+ ++|+||+|+||+|+|++..... ..++++.+..++..+..
T Consensus 167 ~---~~i~v~~i~PG~i~t~~~~~~~-----------------~~~~~~~~~~~~~~~~~ 206 (225)
T PRK08177 167 E---PTLTVLSMHPGWVKTDMGGDNA-----------------PLDVETSVKGLVEQIEA 206 (225)
T ss_pred c---CCeEEEEEcCCceecCCCCCCC-----------------CCCHHHHHHHHHHHHHh
Confidence 5 7999999999999999865431 13567777777777644
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=212.06 Aligned_cols=219 Identities=26% Similarity=0.366 Sum_probs=177.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
|+++||||+|+||.++++.|+++|++|++++|+.++++... . ..+..+.+|+++.++++.+++.+...
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~----~--------~~~~~~~~D~~~~~~~~~~~~~i~~~ 70 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMN----S--------LGFTGILLDLDDPESVERAADEVIAL 70 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHH----h--------CCCeEEEeecCCHHHHHHHHHHHHHh
Confidence 78999999999999999999999999999999987654331 1 13678899999999999999888764
Q ss_pred -CCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccccc
Q psy13409 97 -ESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINL 173 (330)
Q Consensus 97 -~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~ 173 (330)
.+.+|.+|||+|.... ..+.+.+++++.+++|+.|++.+++.+++.|.+.+.++||++||..+..+.
T Consensus 71 ~~~~~~~ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~---------- 140 (256)
T PRK08017 71 TDNRLYGLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHGEGRIVMTSSVMGLIST---------- 140 (256)
T ss_pred cCCCCeEEEECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCEEEEEcCcccccCC----------
Confidence 3689999999997653 356788899999999999999999999999988878999999998877664
Q ss_pred ccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCC
Q psy13409 174 EKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPG 253 (330)
Q Consensus 174 ~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (330)
+....|+++|++++.++++++.++. .
T Consensus 141 ----~~~~~Y~~sK~~~~~~~~~l~~~~~--------------------------------------------------~ 166 (256)
T PRK08017 141 ----PGRGAYAASKYALEAWSDALRMELR--------------------------------------------------H 166 (256)
T ss_pred ----CCccHHHHHHHHHHHHHHHHHHHHh--------------------------------------------------h
Confidence 5678899999999999999999987 5
Q ss_pred CCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhcccc
Q psy13409 254 ANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKK 314 (330)
Q Consensus 254 ~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~ 314 (330)
.+|++++|+||+++|++........................+|+|+|+.+..++..+.
T Consensus 167 ---~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~~ 224 (256)
T PRK08017 167 ---SGIKVSLIEPGPIRTRFTDNVNQTQSDKPVENPGIAARFTLGPEAVVPKLRHALESPK 224 (256)
T ss_pred ---cCCEEEEEeCCCcccchhhcccchhhccchhhhHHHhhcCCCHHHHHHHHHHHHhCCC
Confidence 7999999999999999775443221111111111112225799999999999997654
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=203.65 Aligned_cols=161 Identities=35% Similarity=0.538 Sum_probs=147.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecC--hhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGA-RVIMACRS--LEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~--~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
|+++||||++|||++++++|+++|. .|++++|+ .+..+++.+++.. .+.++.++++|++++++++++++++
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~------~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKA------PGAKITFIECDLSDPESIRALIEEV 74 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHH------TTSEEEEEESETTSHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccc------ccccccccccccccccccccccccc
Confidence 6899999999999999999999966 78999999 6777778777775 3689999999999999999999999
Q ss_pred HhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccc
Q psy13409 94 LDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDI 171 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~ 171 (330)
.+.++++|++|||+|..... .+.+.+++++++++|+.+++.+.+.++| ++.|+||++||..+..+.
T Consensus 75 ~~~~~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~----~~~g~iv~~sS~~~~~~~-------- 142 (167)
T PF00106_consen 75 IKRFGPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLP----QGGGKIVNISSIAGVRGS-------- 142 (167)
T ss_dssp HHHHSSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHH----HTTEEEEEEEEGGGTSSS--------
T ss_pred ccccccccccccccccccccccccccchhhhhccccccceeeeeeehhee----ccccceEEecchhhccCC--------
Confidence 99999999999999998743 5678899999999999999999999999 447999999999998885
Q ss_pred ccccCCCcchhhHHhHHHHHHHHHHHHHHh
Q psy13409 172 NLEKGYSATGAYGRSKLANILFTTELAKRL 201 (330)
Q Consensus 172 ~~~~~~~~~~~Y~asK~a~~~~~~~la~~~ 201 (330)
+.+..|++||+|+++|+++++.|+
T Consensus 143 ------~~~~~Y~askaal~~~~~~la~e~ 166 (167)
T PF00106_consen 143 ------PGMSAYSASKAALRGLTQSLAAEL 166 (167)
T ss_dssp ------TTBHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------CCChhHHHHHHHHHHHHHHHHHhc
Confidence 788999999999999999999986
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >KOG1199|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.9e-29 Score=211.12 Aligned_cols=233 Identities=24% Similarity=0.276 Sum_probs=198.1
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
..+|-+++||||.+|+|++.+++|+.+|+.|++.+--.++-++.++++ ++++.+.+.|+++++++...+..
T Consensus 6 s~kglvalvtggasglg~ataerlakqgasv~lldlp~skg~~vakel---------g~~~vf~padvtsekdv~aala~ 76 (260)
T KOG1199|consen 6 STKGLVALVTGGASGLGKATAERLAKQGASVALLDLPQSKGADVAKEL---------GGKVVFTPADVTSEKDVRAALAK 76 (260)
T ss_pred hhcCeeEEeecCcccccHHHHHHHHhcCceEEEEeCCcccchHHHHHh---------CCceEEeccccCcHHHHHHHHHH
Confidence 368999999999999999999999999999999999888877777775 78999999999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCCC--------CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC------CCeEEEEcCCC
Q psy13409 93 ILDNESAIHLLINNAGVMMCP--------RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA------PARIINLSSLA 158 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~--------~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~------~g~IV~iSS~~ 158 (330)
++..||++|+++||||+.... ...+.++|++.+++|+.|.|++++...-.|-++. .|.||+..|.+
T Consensus 77 ak~kfgrld~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgviintasva 156 (260)
T KOG1199|consen 77 AKAKFGRLDALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASVA 156 (260)
T ss_pred HHhhccceeeeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEEeeceee
Confidence 999999999999999976421 3568899999999999999999999888886542 57899999998
Q ss_pred cccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCC
Q psy13409 159 HTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQT 238 (330)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (330)
+.-|. -+.++|++||.++.+++--+|+++.
T Consensus 157 afdgq--------------~gqaaysaskgaivgmtlpiardla------------------------------------ 186 (260)
T KOG1199|consen 157 AFDGQ--------------TGQAAYSASKGAIVGMTLPIARDLA------------------------------------ 186 (260)
T ss_pred eecCc--------------cchhhhhcccCceEeeechhhhhcc------------------------------------
Confidence 87775 7899999999999999999999999
Q ss_pred CCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhcccccccc
Q psy13409 239 PTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERE 318 (330)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~ 318 (330)
+ .|||++.|.||..+||+....++.....-....+... +++.|.|-|..+-...+.+ +.
T Consensus 187 --------------~---~gir~~tiapglf~tpllsslpekv~~fla~~ipfps-rlg~p~eyahlvqaiienp---~l 245 (260)
T KOG1199|consen 187 --------------G---DGIRFNTIAPGLFDTPLLSSLPEKVKSFLAQLIPFPS-RLGHPHEYAHLVQAIIENP---YL 245 (260)
T ss_pred --------------c---CceEEEeecccccCChhhhhhhHHHHHHHHHhCCCch-hcCChHHHHHHHHHHHhCc---cc
Confidence 7 8999999999999999988766432211111223222 2789999999999988664 78
Q ss_pred Cceeccc
Q psy13409 319 TGLYYAK 325 (330)
Q Consensus 319 ~G~~~~~ 325 (330)
+|+.|--
T Consensus 246 ngevir~ 252 (260)
T KOG1199|consen 246 NGEVIRF 252 (260)
T ss_pred CCeEEEe
Confidence 9988754
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=211.31 Aligned_cols=219 Identities=20% Similarity=0.242 Sum_probs=173.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
+|++|||||+||||++++++|+++|++|++++|+.+.+++..+.... .+.++.++.+|+++++++.+++.
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~------~~~~~~~~~~D~~~~~~~~~~~~---- 71 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAAR------RGLALRVEKLDLTDAIDRAQAAE---- 71 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh------cCCcceEEEeeCCCHHHHHHHhc----
Confidence 67999999999999999999999999999999998776666554443 24568899999999988877643
Q ss_pred cCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccccc
Q psy13409 96 NESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINL 173 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~ 173 (330)
+.+|++|||||.... ..+.+.++++..+++|+.+++.+++.+++.+.+.+.++||++||..+..+.
T Consensus 72 --~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~SS~~~~~~~---------- 139 (257)
T PRK09291 72 --WDVDVLLNNAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGKGKVVFTSSMAGLITG---------- 139 (257)
T ss_pred --CCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEcChhhccCC----------
Confidence 379999999997653 357788999999999999999999999999988777999999998876663
Q ss_pred ccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCC
Q psy13409 174 EKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPG 253 (330)
Q Consensus 174 ~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (330)
+....|+++|++++.++++++.++. .
T Consensus 140 ----~~~~~Y~~sK~a~~~~~~~l~~~~~--------------------------------------------------~ 165 (257)
T PRK09291 140 ----PFTGAYCASKHALEAIAEAMHAELK--------------------------------------------------P 165 (257)
T ss_pred ----CCcchhHHHHHHHHHHHHHHHHHHH--------------------------------------------------h
Confidence 5677899999999999999999987 5
Q ss_pred CCCCceeEEEeeCcccccCcccccCCCc-----hhhHHHHHH--hhhhhccChHHHHHHHHHhhccc
Q psy13409 254 ANITNVNTYAVHPGVVDTELSRHFDSII-----PGTAWLYQR--VGGLFIKSPLQGAQTTLYCALDK 313 (330)
Q Consensus 254 ~~~~~i~v~~v~pG~v~t~~~~~~~~~~-----~~~~~~~~~--~~~~~~~~~~e~a~~~~~l~~~~ 313 (330)
.||++++|+||++.|++........ ......... .......+++|+++.++.++..+
T Consensus 166 ---~gi~~~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 229 (257)
T PRK09291 166 ---FGIQVATVNPGPYLTGFNDTMAETPKRWYDPARNFTDPEDLAFPLEQFDPQEMIDAMVEVIPAD 229 (257)
T ss_pred ---cCcEEEEEecCcccccchhhhhhhhhhhcchhhHHHhhhhhhccccCCCHHHHHHHHHHHhcCC
Confidence 7999999999999998754322110 000111101 11112368999999999887543
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-26 Score=208.82 Aligned_cols=203 Identities=29% Similarity=0.383 Sum_probs=171.3
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
+++.+++++||||+|+||++++++|+++|+ +|++++|+.+++.+ .+.++.++.+|+++.+++++++
T Consensus 2 ~~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~-------------~~~~~~~~~~D~~~~~~~~~~~ 68 (238)
T PRK08264 2 MDIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD-------------LGPRVVPLQLDVTDPASVAAAA 68 (238)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh-------------cCCceEEEEecCCCHHHHHHHH
Confidence 567899999999999999999999999999 99999999765433 1457889999999999988877
Q ss_pred HHHHhcCCCeeEEEEcCCCCC---CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCc
Q psy13409 91 QEILDNESAIHLLINNAGVMM---CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~---~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~ 167 (330)
+. .+++|++||++|... +..+.+.+++...+++|+.+++.+++.+.+.+.+.+.+++|++||..+..+.
T Consensus 69 ~~----~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~~---- 140 (238)
T PRK08264 69 EA----ASDVTILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSWVNF---- 140 (238)
T ss_pred Hh----cCCCCEEEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhccCC----
Confidence 64 467999999999833 2356788999999999999999999999999988778999999998876653
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
++...|+.+|++++.++++++.++.
T Consensus 141 ----------~~~~~y~~sK~a~~~~~~~l~~~~~--------------------------------------------- 165 (238)
T PRK08264 141 ----------PNLGTYSASKAAAWSLTQALRAELA--------------------------------------------- 165 (238)
T ss_pred ----------CCchHhHHHHHHHHHHHHHHHHHhh---------------------------------------------
Confidence 6678899999999999999999998
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccc
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDK 313 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~ 313 (330)
+ .||+++++.||.++|++...... . ..+++++|+.++..+..+
T Consensus 166 -----~---~~i~~~~v~pg~v~t~~~~~~~~-------------~--~~~~~~~a~~~~~~~~~~ 208 (238)
T PRK08264 166 -----P---QGTRVLGVHPGPIDTDMAAGLDA-------------P--KASPADVARQILDALEAG 208 (238)
T ss_pred -----h---cCeEEEEEeCCcccccccccCCc-------------C--CCCHHHHHHHHHHHHhCC
Confidence 5 79999999999999998654321 0 457788888888776543
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=212.28 Aligned_cols=207 Identities=19% Similarity=0.129 Sum_probs=154.5
Q ss_pred CcccCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHH
Q psy13409 6 GKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKS 85 (330)
Q Consensus 6 ~~~~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~s 85 (330)
..+++...++||+++||||++|||++++++|+++|++|++++|+.....+ .. . .. ...++.+|+++.++
T Consensus 4 ~~~~~~~~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~---~~-~------~~-~~~~~~~D~~~~~~ 72 (245)
T PRK12367 4 ADPMAQSTWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSE---SN-D------ES-PNEWIKWECGKEES 72 (245)
T ss_pred cchhhHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhh---hh-c------cC-CCeEEEeeCCCHHH
Confidence 34566667999999999999999999999999999999999998632111 11 0 11 12568899999987
Q ss_pred HHHHHHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhh---CCCeEEEEcCCCcccC
Q psy13409 86 VRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKS---APARIINLSSLAHTWG 162 (330)
Q Consensus 86 i~~l~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~---~~g~IV~iSS~~~~~~ 162 (330)
+++ .++++|++|||||.... .+.+.+++++.+++|+.+++.+++.++|.|.++ +++.+++.||.++..+
T Consensus 73 ~~~-------~~~~iDilVnnAG~~~~-~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~g~~iiv~ss~a~~~~ 144 (245)
T PRK12367 73 LDK-------QLASLDVLILNHGINPG-GRQDPENINKALEINALSSWRLLELFEDIALNNNSQIPKEIWVNTSEAEIQP 144 (245)
T ss_pred HHH-------hcCCCCEEEECCccCCc-CCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCeEEEEEecccccCC
Confidence 654 34689999999997533 356789999999999999999999999999763 2334545556544322
Q ss_pred CCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcc
Q psy13409 163 DGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNH 242 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (330)
+..+.|++||+|+..+. ++++++..+.
T Consensus 145 ---------------~~~~~Y~aSKaal~~~~-~l~~~l~~e~------------------------------------- 171 (245)
T PRK12367 145 ---------------ALSPSYEISKRLIGQLV-SLKKNLLDKN------------------------------------- 171 (245)
T ss_pred ---------------CCCchhHHHHHHHHHHH-HHHHHHHHhh-------------------------------------
Confidence 34567999999987654 5555543110
Q ss_pred cccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhcccc
Q psy13409 243 YCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKK 314 (330)
Q Consensus 243 ~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~ 314 (330)
.. .+|+|++++||+++|++.. ....+|+|+|+.+++.+..++
T Consensus 172 ---------~~---~~i~v~~~~pg~~~t~~~~------------------~~~~~~~~vA~~i~~~~~~~~ 213 (245)
T PRK12367 172 ---------ER---KKLIIRKLILGPFRSELNP------------------IGIMSADFVAKQILDQANLGL 213 (245)
T ss_pred ---------cc---cccEEEEecCCCcccccCc------------------cCCCCHHHHHHHHHHHHhcCC
Confidence 04 7999999999999998631 014689999999999996654
|
|
| >KOG1610|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-26 Score=212.01 Aligned_cols=187 Identities=29% Similarity=0.430 Sum_probs=166.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
.+.+|.|+|||+.+|.|+.+|++|.++|+.|++...+++..+....+.. .++...+.+|++++++|+++.+.
T Consensus 26 ~~~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~gae~L~~~~~--------s~rl~t~~LDVT~~esi~~a~~~ 97 (322)
T KOG1610|consen 26 SLSDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGAESLRGETK--------SPRLRTLQLDVTKPESVKEAAQW 97 (322)
T ss_pred ccCCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCchHHHHhhhhc--------CCcceeEeeccCCHHHHHHHHHH
Confidence 5789999999999999999999999999999999988877666554432 56888899999999999999999
Q ss_pred HHhcC--CCeeEEEEcCCCCCC---CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCc
Q psy13409 93 ILDNE--SAIHLLINNAGVMMC---PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 93 i~~~~--g~iDvlInnAG~~~~---~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~ 167 (330)
+++.. ..+-.||||||+... .+-.+.+++++.+++|++|++.+++.++|.+++. .||||++||+.|..+.
T Consensus 98 V~~~l~~~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~a-rGRvVnvsS~~GR~~~---- 172 (322)
T KOG1610|consen 98 VKKHLGEDGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRA-RGRVVNVSSVLGRVAL---- 172 (322)
T ss_pred HHHhcccccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhc-cCeEEEecccccCccC----
Confidence 88843 358899999997653 3667899999999999999999999999987765 6999999999998775
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
+..++|++||+|++.|+-+|.+|+.
T Consensus 173 ----------p~~g~Y~~SK~aVeaf~D~lR~EL~--------------------------------------------- 197 (322)
T KOG1610|consen 173 ----------PALGPYCVSKFAVEAFSDSLRRELR--------------------------------------------- 197 (322)
T ss_pred ----------cccccchhhHHHHHHHHHHHHHHHH---------------------------------------------
Confidence 7889999999999999999999999
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCccc
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSR 275 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~ 275 (330)
+ .||.|..|-||..+|++..
T Consensus 198 -----~---fGV~VsiiePG~f~T~l~~ 217 (322)
T KOG1610|consen 198 -----P---FGVKVSIIEPGFFKTNLAN 217 (322)
T ss_pred -----h---cCcEEEEeccCccccccCC
Confidence 7 8999999999999999876
|
|
| >KOG1209|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-27 Score=208.46 Aligned_cols=183 Identities=27% Similarity=0.280 Sum_probs=162.3
Q ss_pred CCCEEEEEcCC-CchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSN-TGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 15 ~gk~aLITGas-~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
.-|.++|||++ ||||.+++++|.++|+.|+++.|+.+.-.++.. ...+....+|+++++++..+..++
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~-----------~~gl~~~kLDV~~~~~V~~v~~ev 74 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAI-----------QFGLKPYKLDVSKPEEVVTVSGEV 74 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHH-----------hhCCeeEEeccCChHHHHHHHHHH
Confidence 46889999974 899999999999999999999999876554432 235889999999999999999999
Q ss_pred Hh-cCCCeeEEEEcCCCCC--CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 94 LD-NESAIHLLINNAGVMM--CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 94 ~~-~~g~iDvlInnAG~~~--~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
++ .+|.+|+|+||||... |..+.+.+..++.+++|++|.+.+++++..++. +.+|.|||++|..+..+.
T Consensus 75 r~~~~Gkld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~li-kaKGtIVnvgSl~~~vpf------- 146 (289)
T KOG1209|consen 75 RANPDGKLDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLI-KAKGTIVNVGSLAGVVPF------- 146 (289)
T ss_pred hhCCCCceEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHH-HccceEEEecceeEEecc-------
Confidence 88 7899999999999875 347889999999999999999999999995554 557999999999988875
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
+..+.|++||+|++.+++.|..|++
T Consensus 147 -------pf~~iYsAsKAAihay~~tLrlEl~------------------------------------------------ 171 (289)
T KOG1209|consen 147 -------PFGSIYSASKAAIHAYARTLRLELK------------------------------------------------ 171 (289)
T ss_pred -------chhhhhhHHHHHHHHhhhhcEEeee------------------------------------------------
Confidence 6778999999999999999999999
Q ss_pred CCCCCCCceeEEEeeCcccccCcccc
Q psy13409 251 PPGANITNVNTYAVHPGVVDTELSRH 276 (330)
Q Consensus 251 ~~~~~~~~i~v~~v~pG~v~t~~~~~ 276 (330)
+ .||+|..+-||-|.|++...
T Consensus 172 --P---Fgv~Vin~itGGv~T~Ia~k 192 (289)
T KOG1209|consen 172 --P---FGVRVINAITGGVATDIADK 192 (289)
T ss_pred --c---cccEEEEecccceecccccC
Confidence 7 99999999999999997654
|
|
| >KOG1210|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-26 Score=211.46 Aligned_cols=224 Identities=22% Similarity=0.187 Sum_probs=196.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
++++||||++|||++++.++..+|++|.++.|+.+++.++.++++-..+ ..++.+..+|++|.++++.+++++++.
T Consensus 34 ~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~~~l~l~~~----~~~v~~~S~d~~~Y~~v~~~~~~l~~~ 109 (331)
T KOG1210|consen 34 RHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKAELELLTQ----VEDVSYKSVDVIDYDSVSKVIEELRDL 109 (331)
T ss_pred ceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHHHHhhhhhhhc----cceeeEeccccccHHHHHHHHhhhhhc
Confidence 7999999999999999999999999999999999999999999876542 334889999999999999999999999
Q ss_pred CCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCCccccccc
Q psy13409 97 ESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSMHFEDINL 173 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~~~~~~~~ 173 (330)
++.+|.+|||||...+. .+.+.++++..+++|+.+.++.+++.++.|++.. .|+|+.+||.++..+.
T Consensus 110 ~~~~d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~a~~~i---------- 179 (331)
T KOG1210|consen 110 EGPIDNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQLAMLGI---------- 179 (331)
T ss_pred cCCcceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhhhhcCc----------
Confidence 99999999999988764 7899999999999999999999999999998876 5799999999999996
Q ss_pred ccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCC
Q psy13409 174 EKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPG 253 (330)
Q Consensus 174 ~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (330)
.++++|+++|+|+.+|+.++.+|+. .
T Consensus 180 ----~GysaYs~sK~alrgLa~~l~qE~i--------------------------------------------------~ 205 (331)
T KOG1210|consen 180 ----YGYSAYSPSKFALRGLAEALRQELI--------------------------------------------------K 205 (331)
T ss_pred ----ccccccccHHHHHHHHHHHHHHHHh--------------------------------------------------h
Confidence 7899999999999999999999998 5
Q ss_pred CCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccc
Q psy13409 254 ANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDK 313 (330)
Q Consensus 254 ~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~ 313 (330)
.||+|..+.|+.++||.........+........... ...+||+|..++.=+..+
T Consensus 206 ---~~v~Vt~~~P~~~~tpGfE~En~tkP~~t~ii~g~ss--~~~~e~~a~~~~~~~~rg 260 (331)
T KOG1210|consen 206 ---YGVHVTLYYPPDTLTPGFERENKTKPEETKIIEGGSS--VIKCEEMAKAIVKGMKRG 260 (331)
T ss_pred ---cceEEEEEcCCCCCCCccccccccCchheeeecCCCC--CcCHHHHHHHHHhHHhhc
Confidence 7999999999999999776665544443333232222 578999999988766443
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=202.06 Aligned_cols=210 Identities=23% Similarity=0.247 Sum_probs=169.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
|+++||||+++||++++++|+++|++|++++|+.+.+++.. . ..+.++.+|+++.++++++++++..
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~~~----~--------~~~~~~~~D~~~~~~v~~~~~~~~~- 68 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAALQ----A--------LGAEALALDVADPASVAGLAWKLDG- 68 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHHHH----h--------ccceEEEecCCCHHHHHHHHHHhcC-
Confidence 68999999999999999999999999999999977654432 1 1245789999999999998877632
Q ss_pred CCCeeEEEEcCCCCCC----CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccc
Q psy13409 97 ESAIHLLINNAGVMMC----PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDIN 172 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~----~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~ 172 (330)
+++|++|||+|.... ..+.+.++++..+++|+.+++.+++.+++.|.+ ..|++|++||..+.++..
T Consensus 69 -~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~g~iv~isS~~~~~~~~-------- 138 (222)
T PRK06953 69 -EALDAAVYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEA-AGGVLAVLSSRMGSIGDA-------- 138 (222)
T ss_pred -CCCCEEEECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhc-cCCeEEEEcCcccccccc--------
Confidence 479999999998632 245688999999999999999999999998855 358999999988776631
Q ss_pred cccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCC
Q psy13409 173 LEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPP 252 (330)
Q Consensus 173 ~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (330)
+......|+++|++++.+++.++.++
T Consensus 139 ---~~~~~~~Y~~sK~a~~~~~~~~~~~~--------------------------------------------------- 164 (222)
T PRK06953 139 ---TGTTGWLYRASKAALNDALRAASLQA--------------------------------------------------- 164 (222)
T ss_pred ---cCCCccccHHhHHHHHHHHHHHhhhc---------------------------------------------------
Confidence 01122369999999999999998874
Q ss_pred CCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceeccc
Q psy13409 253 GANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAK 325 (330)
Q Consensus 253 ~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~ 325 (330)
++++||+|+||+++|++.++.. ..++++.++.++.++.... ...+|.++..
T Consensus 165 ----~~i~v~~v~Pg~i~t~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 215 (222)
T PRK06953 165 ----RHATCIALHPGWVRTDMGGAQA-----------------ALDPAQSVAGMRRVIAQAT-RRDNGRFFQY 215 (222)
T ss_pred ----cCcEEEEECCCeeecCCCCCCC-----------------CCCHHHHHHHHHHHHHhcC-cccCceEEee
Confidence 4799999999999999876421 3578999999999876543 5778888864
|
|
| >PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-26 Score=209.20 Aligned_cols=211 Identities=26% Similarity=0.217 Sum_probs=158.6
Q ss_pred HHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCC
Q psy13409 32 TANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMM 111 (330)
Q Consensus 32 ia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~~g~iDvlInnAG~~~ 111 (330)
+++.|+++|++|++++|+.++.+ . ..++.+|+++.++++++++++. +++|+||||||...
T Consensus 1 ~a~~l~~~G~~Vv~~~r~~~~~~-----~------------~~~~~~Dl~~~~~v~~~~~~~~---~~iD~li~nAG~~~ 60 (241)
T PRK12428 1 TARLLRFLGARVIGVDRREPGMT-----L------------DGFIQADLGDPASIDAAVAALP---GRIDALFNIAGVPG 60 (241)
T ss_pred ChHHHHhCCCEEEEEeCCcchhh-----h------------hHhhcccCCCHHHHHHHHHHhc---CCCeEEEECCCCCC
Confidence 47899999999999999876531 0 1357899999999999988763 68999999999762
Q ss_pred CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCc-ccc------------cccccCCC
Q psy13409 112 CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMH-FED------------INLEKGYS 178 (330)
Q Consensus 112 ~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~-~~~------------~~~~~~~~ 178 (330)
.+.++.++++|+.+++.+++.++|.|.+ .|+||++||.++........ .++ .....+.+
T Consensus 61 ------~~~~~~~~~vN~~~~~~l~~~~~~~~~~--~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (241)
T PRK12428 61 ------TAPVELVARVNFLGLRHLTEALLPRMAP--GGAIVNVASLAGAEWPQRLELHKALAATASFDEGAAWLAAHPVA 132 (241)
T ss_pred ------CCCHHHhhhhchHHHHHHHHHHHHhccC--CcEEEEeCcHHhhccccchHHHHhhhccchHHHHHHhhhccCCC
Confidence 2468899999999999999999998854 48999999988753210000 000 00002346
Q ss_pred cchhhHHhHHHHHHHHHHHH-HHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCCCCCC
Q psy13409 179 ATGAYGRSKLANILFTTELA-KRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGANIT 257 (330)
Q Consensus 179 ~~~~Y~asK~a~~~~~~~la-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (330)
+...|++||+|+++++++++ .|++ + .
T Consensus 133 ~~~~Y~~sK~a~~~~~~~la~~e~~--------------------------------------------------~---~ 159 (241)
T PRK12428 133 LATGYQLSKEALILWTMRQAQPWFG--------------------------------------------------A---R 159 (241)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhh--------------------------------------------------c---c
Confidence 77899999999999999999 9988 5 7
Q ss_pred ceeEEEeeCcccccCcccccCCCchhh--HHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 258 NVNTYAVHPGVVDTELSRHFDSIIPGT--AWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 258 ~i~v~~v~pG~v~t~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
||+||+|+||+|+|++..+........ .....++++ +.+|+|+|+.++||+++ .+++++|+.+...
T Consensus 160 girvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~--~~~pe~va~~~~~l~s~-~~~~~~G~~i~vd 227 (241)
T PRK12428 160 GIRVNCVAPGPVFTPILGDFRSMLGQERVDSDAKRMGR--PATADEQAAVLVFLCSD-AARWINGVNLPVD 227 (241)
T ss_pred CeEEEEeecCCccCcccccchhhhhhHhhhhcccccCC--CCCHHHHHHHHHHHcCh-hhcCccCcEEEec
Confidence 999999999999999876543211101 111123444 78999999999999855 5679999987554
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-24 Score=193.58 Aligned_cols=209 Identities=23% Similarity=0.314 Sum_probs=167.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
.|+++||||+|+||++++++|+++ ++|++++|+.+..++..+.. ..+.++.+|++++++++++++.+
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~D~~~~~~~~~~~~~~-- 69 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELAAEL----------PGATPFPVDLTDPEAIAAAVEQL-- 69 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHHHHh----------ccceEEecCCCCHHHHHHHHHhc--
Confidence 579999999999999999999999 99999999977654443221 24678999999999988887653
Q ss_pred cCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccccc
Q psy13409 96 NESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINL 173 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~ 173 (330)
+++|++||++|..... ...+.+++.+.+++|+.+++.+++.+++.+.+. .+++|++||..+..+.
T Consensus 70 --~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~v~~ss~~~~~~~---------- 136 (227)
T PRK08219 70 --GRLDVLVHNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAA-HGHVVFINSGAGLRAN---------- 136 (227)
T ss_pred --CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCeEEEEcchHhcCcC----------
Confidence 4799999999986432 466778899999999999999999999988765 5899999998876553
Q ss_pred ccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCC
Q psy13409 174 EKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPG 253 (330)
Q Consensus 174 ~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (330)
++...|+.+|++++.+++.++.++. .
T Consensus 137 ----~~~~~y~~~K~a~~~~~~~~~~~~~--------------------------------------------------~ 162 (227)
T PRK08219 137 ----PGWGSYAASKFALRALADALREEEP--------------------------------------------------G 162 (227)
T ss_pred ----CCCchHHHHHHHHHHHHHHHHHHhc--------------------------------------------------C
Confidence 5677899999999999999998876 4
Q ss_pred CCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhcccc
Q psy13409 254 ANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKK 314 (330)
Q Consensus 254 ~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~ 314 (330)
. |++++|.||.++|+.......... .......+.+++|+|+.++++++.+.
T Consensus 163 ---~-i~~~~i~pg~~~~~~~~~~~~~~~------~~~~~~~~~~~~dva~~~~~~l~~~~ 213 (227)
T PRK08219 163 ---N-VRVTSVHPGRTDTDMQRGLVAQEG------GEYDPERYLRPETVAKAVRFAVDAPP 213 (227)
T ss_pred ---C-ceEEEEecCCccchHhhhhhhhhc------cccCCCCCCCHHHHHHHHHHHHcCCC
Confidence 4 999999999999886543321110 01111226899999999999997654
|
|
| >KOG1204|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.8e-26 Score=199.84 Aligned_cols=238 Identities=18% Similarity=0.151 Sum_probs=186.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
..++++|+||+|+|||..+++.+...+-.....+++...++ .+.+.-. .++.......|++...-+.++++..
T Consensus 4 ~~r~villTGaSrgiG~~~v~~i~aed~e~~r~g~~r~~a~--~~~L~v~-----~gd~~v~~~g~~~e~~~l~al~e~~ 76 (253)
T KOG1204|consen 4 NMRKVILLTGASRGIGTGSVATILAEDDEALRYGVARLLAE--LEGLKVA-----YGDDFVHVVGDITEEQLLGALREAP 76 (253)
T ss_pred ccceEEEEecCCCCccHHHHHHHHhcchHHHHHhhhccccc--ccceEEE-----ecCCcceechHHHHHHHHHHHHhhh
Confidence 46788999999999999999998888755444333332222 1111111 2345555667888888888899988
Q ss_pred HhcCCCeeEEEEcCCCCCCC-----CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCCc
Q psy13409 94 LDNESAIHLLINNAGVMMCP-----RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~~-----~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~~ 167 (330)
++..+..|++|||||...+- +..+.+.|+..++.|+++++-+.+.++|.+.++. .+.+||+||.+...+.
T Consensus 77 r~k~gkr~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vVnvSS~aav~p~---- 152 (253)
T KOG1204|consen 77 RKKGGKRDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVVNVSSLAAVRPF---- 152 (253)
T ss_pred hhcCCceeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEEEecchhhhccc----
Confidence 99999999999999987653 3678899999999999999999999999998875 6999999999988774
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
+.|++||++|+|.+++.+.||.|-
T Consensus 153 ----------~~wa~yc~~KaAr~m~f~~lA~EE---------------------------------------------- 176 (253)
T KOG1204|consen 153 ----------SSWAAYCSSKAARNMYFMVLASEE---------------------------------------------- 176 (253)
T ss_pred ----------cHHHHhhhhHHHHHHHHHHHhhcC----------------------------------------------
Confidence 899999999999999999999873
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCCCc----hhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceec
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSII----PGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYY 323 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~ 323 (330)
+ .+|++.+++||+|||+|........ .....+.+.....++.+|...|+.+..|+.... +.+|+++
T Consensus 177 -----p---~~v~vl~~aPGvvDT~mq~~ir~~~~~~p~~l~~f~el~~~~~ll~~~~~a~~l~~L~e~~~--f~sG~~v 246 (253)
T KOG1204|consen 177 -----P---FDVRVLNYAPGVVDTQMQVCIRETSRMTPADLKMFKELKESGQLLDPQVTAKVLAKLLEKGD--FVSGQHV 246 (253)
T ss_pred -----c---cceeEEEccCCcccchhHHHHhhccCCCHHHHHHHHHHHhcCCcCChhhHHHHHHHHHHhcC--ccccccc
Confidence 2 5999999999999999976555433 112222233344458999999999999986643 8999999
Q ss_pred ccCCC
Q psy13409 324 AKADL 328 (330)
Q Consensus 324 ~~~~~ 328 (330)
+++|.
T Consensus 247 dy~D~ 251 (253)
T KOG1204|consen 247 DYYDE 251 (253)
T ss_pred ccccc
Confidence 99875
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=8e-23 Score=199.83 Aligned_cols=196 Identities=19% Similarity=0.177 Sum_probs=149.7
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
..++||+++||||+||||++++++|+++|++|++++|+.+++++.. .. ....+..+.+|++|++++.+.+
T Consensus 174 ~sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~---~~------~~~~v~~v~~Dvsd~~~v~~~l- 243 (406)
T PRK07424 174 LSLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEI---NG------EDLPVKTLHWQVGQEAALAELL- 243 (406)
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH---hh------cCCCeEEEEeeCCCHHHHHHHh-
Confidence 3578999999999999999999999999999999999876553322 11 1234678899999988776543
Q ss_pred HHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCC----CeEEEEcCCCcccCCCCCc
Q psy13409 92 EILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAP----ARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~----g~IV~iSS~~~~~~~~~~~ 167 (330)
+++|++|||||.... .+.+.+++++++++|+.+++.+++.++|.|.+++. +.+|++|+ ++ ..
T Consensus 244 ------~~IDiLInnAGi~~~-~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~~~~~~iiVn~Ss-a~-~~----- 309 (406)
T PRK07424 244 ------EKVDILIINHGINVH-GERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRDKATKEVWVNTSE-AE-VN----- 309 (406)
T ss_pred ------CCCCEEEECCCcCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEcc-cc-cc-----
Confidence 578999999997643 46778899999999999999999999999987642 33555554 32 22
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
++..+.|++||+|+..++. +.++
T Consensus 310 ---------~~~~~~Y~ASKaAl~~l~~-l~~~----------------------------------------------- 332 (406)
T PRK07424 310 ---------PAFSPLYELSKRALGDLVT-LRRL----------------------------------------------- 332 (406)
T ss_pred ---------CCCchHHHHHHHHHHHHHH-HHHh-----------------------------------------------
Confidence 1345679999999999974 3332
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhcccc
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKK 314 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~ 314 (330)
. .++.|..+.||+++|++... ...+||++|+.+++++..+.
T Consensus 333 -----~---~~~~I~~i~~gp~~t~~~~~------------------~~~spe~vA~~il~~i~~~~ 373 (406)
T PRK07424 333 -----D---APCVVRKLILGPFKSNLNPI------------------GVMSADWVAKQILKLAKRDF 373 (406)
T ss_pred -----C---CCCceEEEEeCCCcCCCCcC------------------CCCCHHHHHHHHHHHHHCCC
Confidence 1 35667778899998886310 14699999999999986654
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-21 Score=220.02 Aligned_cols=181 Identities=20% Similarity=0.178 Sum_probs=152.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHC-CCEEEEEecCh--------------hHH--------------------------
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKR-GARVIMACRSL--------------EKA-------------------------- 53 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~-G~~Vil~~R~~--------------~~l-------------------------- 53 (330)
+|+++|||||++|||++++++|+++ |++|++++|+. ..+
T Consensus 1996 ~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~~ 2075 (2582)
T TIGR02813 1996 SDDVFLVTGGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVRP 2075 (2582)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhcccc
Confidence 5899999999999999999999998 69999999982 001
Q ss_pred -------HHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHh
Q psy13409 54 -------ETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQ 124 (330)
Q Consensus 54 -------~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~ 124 (330)
.+..+.+++ .+.++.++.||++|.++++++++++.+. ++||+||||||+.... .+.+.++|++.
T Consensus 2076 ~~~~~ei~~~la~l~~------~G~~v~y~~~DVtD~~av~~av~~v~~~-g~IDgVVhnAGv~~~~~i~~~t~e~f~~v 2148 (2582)
T TIGR02813 2076 VLSSLEIAQALAAFKA------AGASAEYASADVTNSVSVAATVQPLNKT-LQITGIIHGAGVLADKHIQDKTLEEFNAV 2148 (2582)
T ss_pred cchhHHHHHHHHHHHh------cCCcEEEEEccCCCHHHHHHHHHHHHHh-CCCcEEEECCccCCCCCcccCCHHHHHHH
Confidence 011111111 3678999999999999999999999877 6899999999986543 67899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhccc
Q psy13409 125 FATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVN 204 (330)
Q Consensus 125 l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~ 204 (330)
+++|+.|.+++++.+.+.+ .++||++||.++.+|. +++..|+++|++++.+++.++.++.
T Consensus 2149 ~~~nv~G~~~Ll~al~~~~----~~~IV~~SSvag~~G~--------------~gqs~YaaAkaaL~~la~~la~~~~-- 2208 (2582)
T TIGR02813 2149 YGTKVDGLLSLLAALNAEN----IKLLALFSSAAGFYGN--------------TGQSDYAMSNDILNKAALQLKALNP-- 2208 (2582)
T ss_pred HHHHHHHHHHHHHHHHHhC----CCeEEEEechhhcCCC--------------CCcHHHHHHHHHHHHHHHHHHHHcC--
Confidence 9999999999888876643 3589999999999886 7888999999999999999998753
Q ss_pred ccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCCCCCCceeEEEeeCcccccCccc
Q psy13409 205 FSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSR 275 (330)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~ 275 (330)
+++|++|+||+++|+|..
T Consensus 2209 -----------------------------------------------------~irV~sI~wG~wdtgm~~ 2226 (2582)
T TIGR02813 2209 -----------------------------------------------------SAKVMSFNWGPWDGGMVN 2226 (2582)
T ss_pred -----------------------------------------------------CcEEEEEECCeecCCccc
Confidence 589999999999998863
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.8e-21 Score=161.31 Aligned_cols=158 Identities=21% Similarity=0.224 Sum_probs=130.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHH---HHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETA---ADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~---~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
|+++||||++|||.+++++|+++|+ .|++++|+....+.. .+.+++ .+.++.++.+|++++++++++++.
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~------~~~~~~~~~~D~~~~~~~~~~~~~ 74 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEA------LGAEVTVVACDVADRAALAAALAA 74 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHh------cCCeEEEEECCCCCHHHHHHHHHH
Confidence 5799999999999999999999997 688888876543332 233332 356788999999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 93 ILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
+...++++|.+||++|.... ....+.++++..+++|+.+++.+.+.+.+ .+.+++|++||..+..+.
T Consensus 75 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~ii~~ss~~~~~~~------- 143 (180)
T smart00822 75 IPARLGPLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRD----LPLDFFVLFSSVAGVLGN------- 143 (180)
T ss_pred HHHHcCCeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhcc----CCcceEEEEccHHHhcCC-------
Confidence 98888999999999997643 25678899999999999999999888733 345899999998887774
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHH
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELA 198 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la 198 (330)
+....|+++|+++..+++.++
T Consensus 144 -------~~~~~y~~sk~~~~~~~~~~~ 164 (180)
T smart00822 144 -------PGQANYAAANAFLDALAAHRR 164 (180)
T ss_pred -------CCchhhHHHHHHHHHHHHHHH
Confidence 677889999999999987764
|
It uses NADPH to reduce the keto group to a hydroxy group. |
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=189.91 Aligned_cols=217 Identities=18% Similarity=0.136 Sum_probs=156.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhc---ccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLK---DVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~---~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
..+||+++||||+|+||++++++|+++|++|++++|+.++++.+.+.+..... ......++.++.+|+++.+++.+.
T Consensus 77 ~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a 156 (576)
T PLN03209 77 TKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA 156 (576)
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence 35799999999999999999999999999999999999887776665532100 000124688999999998887654
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcc-cCCCCCcc
Q psy13409 90 AQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHT-WGDGSMHF 168 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~-~~~~~~~~ 168 (330)
+ +.+|+||||+|.... ...++...+++|+.+..++++++.+ .+.++||++||.++. .+.
T Consensus 157 L-------ggiDiVVn~AG~~~~----~v~d~~~~~~VN~~Gt~nLl~Aa~~----agVgRIV~VSSiga~~~g~----- 216 (576)
T PLN03209 157 L-------GNASVVICCIGASEK----EVFDVTGPYRIDYLATKNLVDAATV----AKVNHFILVTSLGTNKVGF----- 216 (576)
T ss_pred h-------cCCCEEEEccccccc----cccchhhHHHHHHHHHHHHHHHHHH----hCCCEEEEEccchhcccCc-----
Confidence 3 568999999997532 2234677788999998888777643 456899999998653 221
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
+. ..|. +|.++..+.+.++.++.
T Consensus 217 ---------p~-~~~~-sk~~~~~~KraaE~~L~---------------------------------------------- 239 (576)
T PLN03209 217 ---------PA-AILN-LFWGVLCWKRKAEEALI---------------------------------------------- 239 (576)
T ss_pred ---------cc-cchh-hHHHHHHHHHHHHHHHH----------------------------------------------
Confidence 11 1243 78888888888888887
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHH-HHHhhhhhccChHHHHHHHHHhhcccccc
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWL-YQRVGGLFIKSPLQGAQTTLYCALDKKCE 316 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~a~~~~~l~~~~~~~ 316 (330)
. .||+++.|+||+++|++........ ..... ...+++ ..+.+|||+.++|+++++.++
T Consensus 240 ----~---sGIrvTIVRPG~L~tp~d~~~~t~~-v~~~~~d~~~gr--~isreDVA~vVvfLasd~~as 298 (576)
T PLN03209 240 ----A---SGLPYTIVRPGGMERPTDAYKETHN-LTLSEEDTLFGG--QVSNLQVAELMACMAKNRRLS 298 (576)
T ss_pred ----H---cCCCEEEEECCeecCCccccccccc-eeeccccccCCC--ccCHHHHHHHHHHHHcCchhc
Confidence 5 7999999999999988544211100 00000 123344 689999999999999866543
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-19 Score=171.65 Aligned_cols=205 Identities=16% Similarity=0.106 Sum_probs=149.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCC--CEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRG--ARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G--~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
++||++|||||+|+||++++++|+++| ++|++++|+......+.+.+ ...++.++.+|++|.+++.++++
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~--------~~~~~~~v~~Dl~d~~~l~~~~~ 73 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKF--------PAPCLRFFIGDVRDKERLTRALR 73 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHh--------CCCcEEEEEccCCCHHHHHHHHh
Confidence 578999999999999999999999986 68999998865543332221 12468899999999998887764
Q ss_pred HHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccc
Q psy13409 92 EILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDI 171 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~ 171 (330)
.+|++||+||..... ....+..+.+++|+.+++++++++.+ .+.++||++||....
T Consensus 74 -------~iD~Vih~Ag~~~~~--~~~~~~~~~~~~Nv~g~~~ll~aa~~----~~~~~iV~~SS~~~~----------- 129 (324)
T TIGR03589 74 -------GVDYVVHAAALKQVP--AAEYNPFECIRTNINGAQNVIDAAID----NGVKRVVALSTDKAA----------- 129 (324)
T ss_pred -------cCCEEEECcccCCCc--hhhcCHHHHHHHHHHHHHHHHHHHHH----cCCCEEEEEeCCCCC-----------
Confidence 379999999975322 11223457899999999999988765 345799999996432
Q ss_pred ccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCC
Q psy13409 172 NLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHP 251 (330)
Q Consensus 172 ~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (330)
.+...|++||++.+.++++++.+++
T Consensus 130 ------~p~~~Y~~sK~~~E~l~~~~~~~~~------------------------------------------------- 154 (324)
T TIGR03589 130 ------NPINLYGATKLASDKLFVAANNISG------------------------------------------------- 154 (324)
T ss_pred ------CCCCHHHHHHHHHHHHHHHHHhhcc-------------------------------------------------
Confidence 2346799999999999999988776
Q ss_pred CCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHH-----Hh----hhhhccChHHHHHHHHHhhcc
Q psy13409 252 PGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQ-----RV----GGLFIKSPLQGAQTTLYCALD 312 (330)
Q Consensus 252 ~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~-----~~----~~~~~~~~~e~a~~~~~l~~~ 312 (330)
. .|+++++|.||.|.++-.. . .......... ++ ..+.+..++|+|++++.++..
T Consensus 155 -~---~gi~~~~lR~g~v~G~~~~-~--i~~~~~~~~~~~~~~~i~~~~~~r~~i~v~D~a~a~~~al~~ 217 (324)
T TIGR03589 155 -S---KGTRFSVVRYGNVVGSRGS-V--VPFFKSLKEEGVTELPITDPRMTRFWITLEQGVNFVLKSLER 217 (324)
T ss_pred -c---cCcEEEEEeecceeCCCCC-c--HHHHHHHHHhCCCCeeeCCCCceEeeEEHHHHHHHHHHHHhh
Confidence 4 7999999999999886311 0 0000000000 00 011257899999999999854
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >KOG1478|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.3e-20 Score=164.13 Aligned_cols=237 Identities=22% Similarity=0.342 Sum_probs=187.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCC-----CEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRG-----ARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G-----~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
..|++||||+++|||.+|+++|++.. .+|++++|+-++++++.+.+.+.+++ ...++.++.+|+++..|+.++
T Consensus 2 ~RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~--~~i~~~yvlvD~sNm~Sv~~A 79 (341)
T KOG1478|consen 2 MRKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPK--STIEVTYVLVDVSNMQSVFRA 79 (341)
T ss_pred CceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCC--ceeEEEEEEEehhhHHHHHHH
Confidence 57999999999999999999999864 46888999999999999999988754 367899999999999999999
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCCC-----------------------------CCCChhhHHHhHHHHHHHHHHHHHHHH
Q psy13409 90 AQEILDNESAIHLLINNAGVMMCP-----------------------------RQLTEDGYELQFATNHLGHYLFTLLLL 140 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~~-----------------------------~~~~~~~~~~~l~vN~~g~~~l~~~~l 140 (330)
.+++.++|.++|.+.-|||++..+ ...+.+++...+++|++|+|.+.+.+.
T Consensus 80 ~~di~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l~ 159 (341)
T KOG1478|consen 80 SKDIKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELE 159 (341)
T ss_pred HHHHHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhhh
Confidence 999999999999999999976422 134677888899999999999999999
Q ss_pred HHHhhhCCCeEEEEcCCCcccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhccc
Q psy13409 141 PRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGR 220 (330)
Q Consensus 141 ~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~ 220 (330)
|++.......+|.+||..+... ...+...+...+-.+|+.||.+.+.|.-.+-+.+.
T Consensus 160 pll~~~~~~~lvwtSS~~a~kk-----~lsleD~q~~kg~~pY~sSKrl~DlLh~A~~~~~~------------------ 216 (341)
T KOG1478|consen 160 PLLCHSDNPQLVWTSSRMARKK-----NLSLEDFQHSKGKEPYSSSKRLTDLLHVALNRNFK------------------ 216 (341)
T ss_pred hHhhcCCCCeEEEEeecccccc-----cCCHHHHhhhcCCCCcchhHHHHHHHHHHHhcccc------------------
Confidence 9998877679999999886544 23333444567778999999999999888887776
Q ss_pred ccccchhhhhhhcccCCCCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHH-----HHHHhhhhh
Q psy13409 221 TKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAW-----LYQRVGGLF 295 (330)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~-----~~~~~~~~~ 295 (330)
+ -|+.-++|+||.--|.+...........-. ....+|.++
T Consensus 217 --------------------------------~---~g~~qyvv~pg~~tt~~~~~~l~~~~~~~~~~~fyl~rllgspw 261 (341)
T KOG1478|consen 217 --------------------------------P---LGINQYVVQPGIFTTNSFSEYLNPFTYFGMLCGFYLARLLGSPW 261 (341)
T ss_pred --------------------------------c---cchhhhcccCceeecchhhhhhhhHHHHHHHHHHHHHHHhcCcc
Confidence 4 699999999999888776554432211110 112233333
Q ss_pred c-cChHHHHHHHHHhhc
Q psy13409 296 I-KSPLQGAQTTLYCAL 311 (330)
Q Consensus 296 ~-~~~~e~a~~~~~l~~ 311 (330)
- .+|--.|++.+|+..
T Consensus 262 h~id~y~aa~A~vw~~l 278 (341)
T KOG1478|consen 262 HNIDPYKAANAPVWVTL 278 (341)
T ss_pred cccCccccccchhhhhh
Confidence 2 566667877777754
|
|
| >PRK13656 trans-2-enoyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-18 Score=167.85 Aligned_cols=219 Identities=14% Similarity=0.063 Sum_probs=160.7
Q ss_pred CCCCEEEEEcCCCchHHH--HHHHHHHCCCEEEEEecChhHHH------------HHHHHHHHhhcccCCCCeEEEEEcc
Q psy13409 14 LDGKTAIVTGSNTGIGKC--TANELAKRGARVIMACRSLEKAE------------TAADDIRTSLKDVKDAGEVVIRQLD 79 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~a--ia~~L~~~G~~Vil~~R~~~~l~------------~~~~~l~~~~~~~~~~~~v~~i~~D 79 (330)
-.+|++||||+++|||.+ +++.| +.|++|+++++..+..+ ...+.+.+ .+..+..+.||
T Consensus 39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~------~G~~a~~i~~D 111 (398)
T PRK13656 39 NGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKA------AGLYAKSINGD 111 (398)
T ss_pred CCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHh------cCCceEEEEcC
Confidence 357999999999999999 89999 99999888885432211 12223322 24567889999
Q ss_pred CCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCC------------------------------------CCChhhHHH
Q psy13409 80 LSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR------------------------------------QLTEDGYEL 123 (330)
Q Consensus 80 ls~~~si~~l~~~i~~~~g~iDvlInnAG~~~~~~------------------------------------~~~~~~~~~ 123 (330)
+++.++++++++.+.+.+|++|+||||+|...... ..+.++++.
T Consensus 112 Vss~E~v~~lie~I~e~~G~IDiLVnSaA~~~r~~p~~g~~~~s~lKpi~~~~~~~~~d~~~~~i~~~s~~~~~~~ei~~ 191 (398)
T PRK13656 112 AFSDEIKQKVIELIKQDLGQVDLVVYSLASPRRTDPKTGEVYRSVLKPIGEPYTGKTLDTDKDVIIEVTVEPATEEEIAD 191 (398)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEECCccCCCCCcccCceeecccccccccccCCcccccccceeEEEEeeCCHHHHHH
Confidence 99999999999999999999999999999773211 123334444
Q ss_pred hHHHHHHHH-----HHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccccCCCcc--hhhHHhHHHHHHHHHH
Q psy13409 124 QFATNHLGH-----YLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSAT--GAYGRSKLANILFTTE 196 (330)
Q Consensus 124 ~l~vN~~g~-----~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~~~~~--~~Y~asK~a~~~~~~~ 196 (330)
+ +.++|. |.=.+...+.|. .++++|-+|+..+.... +.+ +.-+.+|++++.-+++
T Consensus 192 T--v~vMggedw~~Wi~al~~a~lla--~g~~~va~TY~G~~~t~--------------p~Y~~g~mG~AKa~LE~~~r~ 253 (398)
T PRK13656 192 T--VKVMGGEDWELWIDALDEAGVLA--EGAKTVAYSYIGPELTH--------------PIYWDGTIGKAKKDLDRTALA 253 (398)
T ss_pred H--HHhhccchHHHHHHHHHhccccc--CCcEEEEEecCCcceee--------------cccCCchHHHHHHHHHHHHHH
Confidence 3 333433 222334444442 36899999997765542 334 4679999999999999
Q ss_pred HHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCCCCCCceeEEEeeCcccccCcccc
Q psy13409 197 LAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRH 276 (330)
Q Consensus 197 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~ 276 (330)
|+.+++ + .|||+|++.+|.+.|..+..
T Consensus 254 La~~L~--------------------------------------------------~---~giran~i~~g~~~T~Ass~ 280 (398)
T PRK13656 254 LNEKLA--------------------------------------------------A---KGGDAYVSVLKAVVTQASSA 280 (398)
T ss_pred HHHHhh--------------------------------------------------h---cCCEEEEEecCcccchhhhc
Confidence 999999 6 79999999999999999998
Q ss_pred cCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhcc
Q psy13409 277 FDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALD 312 (330)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~ 312 (330)
.+..+.....++.-++. -++-|.+-+-+..|..+
T Consensus 281 Ip~~~ly~~~l~kvmk~--~g~he~~ieq~~rl~~~ 314 (398)
T PRK13656 281 IPVMPLYISLLFKVMKE--KGTHEGCIEQIYRLFSE 314 (398)
T ss_pred CCCcHHHHHHHHHHHHh--cCCCCChHHHHHHHHHH
Confidence 87776666666666655 45667777777666543
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-18 Score=163.37 Aligned_cols=170 Identities=15% Similarity=0.038 Sum_probs=123.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
+||++|||||+|+||++++++|+++|++|+++.|+.....+........ ....++.++.+|+++.++++++++
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~~D~~d~~~~~~~~~--- 76 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALD----GAKERLKLFKADLLDEGSFELAID--- 76 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhcc----CCCCceEEEeCCCCCchHHHHHHc---
Confidence 4799999999999999999999999999999988876544432222110 013578899999999998887765
Q ss_pred hcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCC--cccccc
Q psy13409 95 DNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSM--HFEDIN 172 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~--~~~~~~ 172 (330)
.+|++||+||.... ..+.+.+...+++|+.+++++++++.+.+ +.++||++||.++..+.... ...+++
T Consensus 77 ----~~d~vih~A~~~~~--~~~~~~~~~~~~~n~~g~~~ll~a~~~~~---~~~~iv~~SS~~~~~~~~~~~~~~~~~~ 147 (325)
T PLN02989 77 ----GCETVFHTASPVAI--TVKTDPQVELINPAVNGTINVLRTCTKVS---SVKRVILTSSMAAVLAPETKLGPNDVVD 147 (325)
T ss_pred ----CCCEEEEeCCCCCC--CCCCChHHHHHHHHHHHHHHHHHHHHHcC---CceEEEEecchhheecCCccCCCCCccC
Confidence 47999999996532 23445678889999999999999887643 24799999998765543110 011222
Q ss_pred cccCCC------cchhhHHhHHHHHHHHHHHHHH
Q psy13409 173 LEKGYS------ATGAYGRSKLANILFTTELAKR 200 (330)
Q Consensus 173 ~~~~~~------~~~~Y~asK~a~~~~~~~la~~ 200 (330)
+..+.. ....|+.||.+.+.+++.++++
T Consensus 148 E~~~~~p~~~~~~~~~Y~~sK~~~E~~~~~~~~~ 181 (325)
T PLN02989 148 ETFFTNPSFAEERKQWYVLSKTLAEDAAWRFAKD 181 (325)
T ss_pred cCCCCchhHhcccccchHHHHHHHHHHHHHHHHH
Confidence 222211 1357999999999999888764
|
|
| >KOG1502|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-18 Score=162.43 Aligned_cols=240 Identities=16% Similarity=0.082 Sum_probs=170.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHH--HHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETA--ADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~--~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
.+++++||||+|.||.+|+++|+++||.|..+.|++++.++. +..++. ...++..+..|++++++++..++.
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~------a~~~l~l~~aDL~d~~sf~~ai~g 78 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEG------AKERLKLFKADLLDEGSFDKAIDG 78 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhccc------CcccceEEeccccccchHHHHHhC
Confidence 789999999999999999999999999999999999874442 333332 356799999999999999988874
Q ss_pred HHhcCCCeeEEEEcCCCCCCCCCCChhhHH-HhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccc
Q psy13409 93 ILDNESAIHLLINNAGVMMCPRQLTEDGYE-LQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDI 171 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~~~~~~~~~~-~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~ 171 (330)
+|+++|.|....... .+.+ +.++..+.|..++++++.+.- .-.|||++||.++......+.....
T Consensus 79 -------cdgVfH~Asp~~~~~----~~~e~~li~pav~Gt~nVL~ac~~~~---sVkrvV~TSS~aAv~~~~~~~~~~~ 144 (327)
T KOG1502|consen 79 -------CDGVFHTASPVDFDL----EDPEKELIDPAVKGTKNVLEACKKTK---SVKRVVYTSSTAAVRYNGPNIGENS 144 (327)
T ss_pred -------CCEEEEeCccCCCCC----CCcHHhhhhHHHHHHHHHHHHHhccC---CcceEEEeccHHHhccCCcCCCCCc
Confidence 699999998764321 1134 688999999888888875531 2479999999998876422222222
Q ss_pred ccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCC
Q psy13409 172 NLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHP 251 (330)
Q Consensus 172 ~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (330)
...+....-.-|+.++.....+.|.+|.+.+++|+++
T Consensus 145 vvdE~~wsd~~~~~~~~~~Y~~sK~lAEkaAw~fa~e------------------------------------------- 181 (327)
T KOG1502|consen 145 VVDEESWSDLDFCRCKKLWYALSKTLAEKAAWEFAKE------------------------------------------- 181 (327)
T ss_pred ccccccCCcHHHHHhhHHHHHHHHHHHHHHHHHHHHh-------------------------------------------
Confidence 2222223334566666666677777777777776666
Q ss_pred CCCCCCceeEEEeeCcccccCcccccCCCchh-hHHHHH------HhhhhhccChHHHHHHHHHhhccccccccCceecc
Q psy13409 252 PGANITNVNTYAVHPGVVDTELSRHFDSIIPG-TAWLYQ------RVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYA 324 (330)
Q Consensus 252 ~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~ 324 (330)
.++....|+||+|-.|........... .-.+.. .-....+..++|+|.+.++++..+.+ .|+|+-
T Consensus 182 -----~~~~lv~inP~lV~GP~l~~~l~~s~~~~l~~i~G~~~~~~n~~~~~VdVrDVA~AHv~a~E~~~a---~GRyic 253 (327)
T KOG1502|consen 182 -----NGLDLVTINPGLVFGPGLQPSLNSSLNALLKLIKGLAETYPNFWLAFVDVRDVALAHVLALEKPSA---KGRYIC 253 (327)
T ss_pred -----CCccEEEecCCceECCCcccccchhHHHHHHHHhcccccCCCCceeeEeHHHHHHHHHHHHcCccc---CceEEE
Confidence 689999999999999977652211100 000000 01111257999999999999988876 588874
Q ss_pred c
Q psy13409 325 K 325 (330)
Q Consensus 325 ~ 325 (330)
.
T Consensus 254 ~ 254 (327)
T KOG1502|consen 254 V 254 (327)
T ss_pred e
Confidence 3
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.9e-18 Score=164.61 Aligned_cols=169 Identities=15% Similarity=0.102 Sum_probs=125.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
++||++|||||+|+||.++++.|+++|++|++++|+........+.+. ...++.++.+|+++.+++.++++..
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~-------~~~~~~~~~~Dl~~~~~~~~~~~~~ 74 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLN-------LAKKIEDHFGDIRDAAKLRKAIAEF 74 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHh-------hcCCceEEEccCCCHHHHHHHHhhc
Confidence 578999999999999999999999999999999998765433322221 1235778899999999998888754
Q ss_pred HhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCCcccccc
Q psy13409 94 LDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSMHFEDIN 172 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~~~~~~~ 172 (330)
.+|++||+|+.... ..+.+++...+++|+.+++++++++.+ .+ .+++|++||... ++... ...+++
T Consensus 75 -----~~d~vih~A~~~~~--~~~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~iv~~SS~~v-yg~~~-~~~~~~ 141 (349)
T TIGR02622 75 -----KPEIVFHLAAQPLV--RKSYADPLETFETNVMGTVNLLEAIRA----IGSVKAVVNVTSDKC-YRNDE-WVWGYR 141 (349)
T ss_pred -----CCCEEEECCccccc--ccchhCHHHHHHHhHHHHHHHHHHHHh----cCCCCEEEEEechhh-hCCCC-CCCCCc
Confidence 58999999996432 334566778899999999999887643 22 469999999653 33210 011233
Q ss_pred cccCCCcchhhHHhHHHHHHHHHHHHHHhc
Q psy13409 173 LEKGYSATGAYGRSKLANILFTTELAKRLQ 202 (330)
Q Consensus 173 ~~~~~~~~~~Y~asK~a~~~~~~~la~~~~ 202 (330)
...+..+...|+.+|++.+.+++.++.++.
T Consensus 142 e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~~ 171 (349)
T TIGR02622 142 ETDPLGGHDPYSSSKACAELVIASYRSSFF 171 (349)
T ss_pred cCCCCCCCCcchhHHHHHHHHHHHHHHHhh
Confidence 333445667899999999999999988775
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.5e-18 Score=159.47 Aligned_cols=231 Identities=13% Similarity=0.022 Sum_probs=151.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhH--HHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEK--AETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~--l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
++|++|||||+|+||++++++|+++|++|+++.|+.+. ..+....+.. .+.++.++.+|++|.+++...+.
T Consensus 5 ~~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~~~~~~~~~~~~~l~~------~~~~~~~~~~Dl~d~~~~~~~l~- 77 (297)
T PLN02583 5 SSKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKNGETEIEKEIRGLSC------EEERLKVFDVDPLDYHSILDALK- 77 (297)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcCchhhhHHHHHHhccc------CCCceEEEEecCCCHHHHHHHHc-
Confidence 57899999999999999999999999999999986432 2222222211 13468889999999988765543
Q ss_pred HHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCC-CC-Ccccc
Q psy13409 93 ILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGD-GS-MHFED 170 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~-~~-~~~~~ 170 (330)
..|.++|.++.... .. ..++..+++|+.+++++++++.+.+ +.++||++||.++.... .. ....+
T Consensus 78 ------~~d~v~~~~~~~~~---~~-~~~~~~~~~nv~gt~~ll~aa~~~~---~v~riV~~SS~~a~~~~~~~~~~~~~ 144 (297)
T PLN02583 78 ------GCSGLFCCFDPPSD---YP-SYDEKMVDVEVRAAHNVLEACAQTD---TIEKVVFTSSLTAVIWRDDNISTQKD 144 (297)
T ss_pred ------CCCEEEEeCccCCc---cc-ccHHHHHHHHHHHHHHHHHHHHhcC---CccEEEEecchHheecccccCCCCCC
Confidence 36888887654321 11 2467889999999999999987653 24799999998765321 11 11122
Q ss_pred cccccCCCc------chhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccc
Q psy13409 171 INLEKGYSA------TGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYC 244 (330)
Q Consensus 171 ~~~~~~~~~------~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
++....... ...|+.||...+.+++.++++
T Consensus 145 ~~E~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~-------------------------------------------- 180 (297)
T PLN02583 145 VDERSWSDQNFCRKFKLWHALAKTLSEKTAWALAMD-------------------------------------------- 180 (297)
T ss_pred CCcccCCCHHHHhhcccHHHHHHHHHHHHHHHHHHH--------------------------------------------
Confidence 332211111 126999999988888777543
Q ss_pred cccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecc
Q psy13409 245 KNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYA 324 (330)
Q Consensus 245 ~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~ 324 (330)
.++++++|+|++|.+|............... .+-+...+..++|+|++++.++..+.. .|.|+-
T Consensus 181 ------------~gi~~v~lrp~~v~Gp~~~~~~~~~~~~~~~-~~~~~~~~v~V~Dva~a~~~al~~~~~---~~r~~~ 244 (297)
T PLN02583 181 ------------RGVNMVSINAGLLMGPSLTQHNPYLKGAAQM-YENGVLVTVDVNFLVDAHIRAFEDVSS---YGRYLC 244 (297)
T ss_pred ------------hCCcEEEEcCCcccCCCCCCchhhhcCCccc-CcccCcceEEHHHHHHHHHHHhcCccc---CCcEEE
Confidence 4799999999999888543211100000000 011222378899999999999975543 455544
Q ss_pred c
Q psy13409 325 K 325 (330)
Q Consensus 325 ~ 325 (330)
.
T Consensus 245 ~ 245 (297)
T PLN02583 245 F 245 (297)
T ss_pred e
Confidence 3
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.4e-18 Score=162.64 Aligned_cols=178 Identities=15% Similarity=0.104 Sum_probs=128.8
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHH-HHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAE-TAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~-~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.++++|++|||||+|+||.+++++|+++|++|++++|+.+... ...+.+.... ...+.++.++.+|++|.+++.+++
T Consensus 2 ~~~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~ 79 (340)
T PLN02653 2 GDPPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDP--HPNKARMKLHYGDLSDASSLRRWL 79 (340)
T ss_pred CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccccccccchhhhcccc--ccccCceEEEEecCCCHHHHHHHH
Confidence 3578999999999999999999999999999999998754211 1111111100 002356889999999999998888
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCC-CeEEEEcCCCcccCCCCCccc
Q psy13409 91 QEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAP-ARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~-g~IV~iSS~~~~~~~~~~~~~ 169 (330)
+.. .+|++||+|+..... ...+.....+++|+.++.++++.+.+...+++. .++|++||. +.+|....
T Consensus 80 ~~~-----~~d~Vih~A~~~~~~--~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss~-~vyg~~~~--- 148 (340)
T PLN02653 80 DDI-----KPDEVYNLAAQSHVA--VSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGSS-EMYGSTPP--- 148 (340)
T ss_pred HHc-----CCCEEEECCcccchh--hhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEeccH-HHhCCCCC---
Confidence 764 589999999975432 223445677899999999999998876543211 267888875 35553221
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQ 202 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~ 202 (330)
+++...+..+...|+.||.+.+.++++++.+++
T Consensus 149 ~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~~ 181 (340)
T PLN02653 149 PQSETTPFHPRSPYAVAKVAAHWYTVNYREAYG 181 (340)
T ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHcC
Confidence 344445556678899999999999999988765
|
|
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-17 Score=146.30 Aligned_cols=158 Identities=24% Similarity=0.285 Sum_probs=124.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHCCC-EEEEEecCh---hHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRGA-RVIMACRSL---EKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~---~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
++|||||.||||..+++.|+++|. +|++++|+. ....+..+++++ .+.++.++.||++|+++++++++++
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~------~g~~v~~~~~Dv~d~~~v~~~~~~~ 75 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELES------AGARVEYVQCDVTDPEAVAAALAQL 75 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHH------TT-EEEEEE--TTSHHHHHHHHHTS
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHh------CCCceeeeccCccCHHHHHHHHHHH
Confidence 789999999999999999999986 899999993 234456666666 3789999999999999999999999
Q ss_pred HhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccc
Q psy13409 94 LDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDI 171 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~ 171 (330)
.+.+++++.+||+||.... ..+.+.++++..+...+.+..++.+.+.+ ..-..+|++||+++.+|.
T Consensus 76 ~~~~~~i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~----~~l~~~i~~SSis~~~G~-------- 143 (181)
T PF08659_consen 76 RQRFGPIDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALEN----RPLDFFILFSSISSLLGG-------- 143 (181)
T ss_dssp HTTSS-EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTT----TTTSEEEEEEEHHHHTT---------
T ss_pred HhccCCcceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhc----CCCCeEEEECChhHhccC--------
Confidence 9999999999999998753 36788999999999999998888776644 345789999999999997
Q ss_pred ccccCCCcchhhHHhHHHHHHHHHHHHH
Q psy13409 172 NLEKGYSATGAYGRSKLANILFTTELAK 199 (330)
Q Consensus 172 ~~~~~~~~~~~Y~asK~a~~~~~~~la~ 199 (330)
++...|+++.+.++.|++....
T Consensus 144 ------~gq~~YaaAN~~lda~a~~~~~ 165 (181)
T PF08659_consen 144 ------PGQSAYAAANAFLDALARQRRS 165 (181)
T ss_dssp ------TTBHHHHHHHHHHHHHHHHHHH
T ss_pred ------cchHhHHHHHHHHHHHHHHHHh
Confidence 8899999999999999886543
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.8e-17 Score=153.18 Aligned_cols=228 Identities=14% Similarity=0.055 Sum_probs=150.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
-.||+++||||+|+||.+++++|+++|++|+++.|+....++..+..... ....++.++.+|+++.++++++++
T Consensus 3 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~~Dl~~~~~~~~~~~-- 76 (322)
T PLN02986 3 GGGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALD----GAKERLKLFKADLLEESSFEQAIE-- 76 (322)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhcc----CCCCceEEEecCCCCcchHHHHHh--
Confidence 46899999999999999999999999999999999876544433222111 013468889999999998887775
Q ss_pred HhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCccc-CCCCCcc-ccc
Q psy13409 94 LDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTW-GDGSMHF-EDI 171 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~-~~~~~~~-~~~ 171 (330)
.+|++||+|+..... ..+.....+++|+.+..++++++.+. .+.++||++||.+... +.+.... ..+
T Consensus 77 -----~~d~vih~A~~~~~~---~~~~~~~~~~~nv~gt~~ll~~~~~~---~~v~rvV~~SS~~~~~~~~~~~~~~~~~ 145 (322)
T PLN02986 77 -----GCDAVFHTASPVFFT---VKDPQTELIDPALKGTINVLNTCKET---PSVKRVILTSSTAAVLFRQPPIEANDVV 145 (322)
T ss_pred -----CCCEEEEeCCCcCCC---CCCchhhhhHHHHHHHHHHHHHHHhc---CCccEEEEecchhheecCCccCCCCCCc
Confidence 379999999975321 11223467899999999888876432 1346999999987542 2211000 111
Q ss_pred ccccCC------CcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccc
Q psy13409 172 NLEKGY------SATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCK 245 (330)
Q Consensus 172 ~~~~~~------~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (330)
+..... .....|+.||.+.+.+++.++++
T Consensus 146 ~E~~~~~p~~~~~~~~~Y~~sK~~aE~~~~~~~~~--------------------------------------------- 180 (322)
T PLN02986 146 DETFFSDPSLCRETKNWYPLSKILAENAAWEFAKD--------------------------------------------- 180 (322)
T ss_pred CcccCCChHHhhccccchHHHHHHHHHHHHHHHHH---------------------------------------------
Confidence 111110 12467999999988888877654
Q ss_pred ccccCCCCCCCCceeEEEeeCcccccCcccccCC-CchhhHHHHHH---h--hhhhccChHHHHHHHHHhhcccc
Q psy13409 246 NVLFHPPGANITNVNTYAVHPGVVDTELSRHFDS-IIPGTAWLYQR---V--GGLFIKSPLQGAQTTLYCALDKK 314 (330)
Q Consensus 246 ~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~-~~~~~~~~~~~---~--~~~~~~~~~e~a~~~~~l~~~~~ 314 (330)
.++++..+.|+.|-+|....... ........... . ....+..++|+|++++.++..+.
T Consensus 181 -----------~~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~Dva~a~~~al~~~~ 244 (322)
T PLN02986 181 -----------NGIDMVVLNPGFICGPLLQPTLNFSVELIVDFINGKNLFNNRFYRFVDVRDVALAHIKALETPS 244 (322)
T ss_pred -----------hCCeEEEEcccceeCCCCCCCCCccHHHHHHHHcCCCCCCCcCcceeEHHHHHHHHHHHhcCcc
Confidence 46888999999998875432111 01111111100 0 11136789999999999986653
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-16 Score=153.83 Aligned_cols=224 Identities=13% Similarity=-0.001 Sum_probs=149.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
+.|++|||||+|+||.+++++|+++|++|++++|+.+............ ....++.++.+|+++.++++.+++
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~v~~Dl~d~~~~~~~~~--- 76 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLP----GATTRLTLWKADLAVEGSFDDAIR--- 76 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhcc----CCCCceEEEEecCCChhhHHHHHh---
Confidence 5789999999999999999999999999999999876554443222110 012368889999999988877764
Q ss_pred hcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccc
Q psy13409 95 DNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLE 174 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~ 174 (330)
.+|.+||+|+..... ..+.....+++|+.+++++++++.+.. ..++||++||.....+...... ..+..
T Consensus 77 ----~~d~ViH~A~~~~~~---~~~~~~~~~~~Nv~gt~~ll~aa~~~~---~~~r~v~~SS~~~~~~~~~~~~-~~~E~ 145 (351)
T PLN02650 77 ----GCTGVFHVATPMDFE---SKDPENEVIKPTVNGMLSIMKACAKAK---TVRRIVFTSSAGTVNVEEHQKP-VYDED 145 (351)
T ss_pred ----CCCEEEEeCCCCCCC---CCCchhhhhhHHHHHHHHHHHHHHhcC---CceEEEEecchhhcccCCCCCC-ccCcc
Confidence 369999999864311 122335678999999999988876531 1368999999754433211100 00111
Q ss_pred ---------cCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccc
Q psy13409 175 ---------KGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCK 245 (330)
Q Consensus 175 ---------~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (330)
....+...|+.||.+.+.+++.++.+
T Consensus 146 ~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~--------------------------------------------- 180 (351)
T PLN02650 146 CWSDLDFCRRKKMTGWMYFVSKTLAEKAAWKYAAE--------------------------------------------- 180 (351)
T ss_pred cCCchhhhhccccccchHHHHHHHHHHHHHHHHHH---------------------------------------------
Confidence 01112347999999999999888764
Q ss_pred ccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHH---------HhhhhhccChHHHHHHHHHhhccc
Q psy13409 246 NVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQ---------RVGGLFIKSPLQGAQTTLYCALDK 313 (330)
Q Consensus 246 ~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~e~a~~~~~l~~~~ 313 (330)
.|+++..+.|+.|.+|........ ........ ..+...+..++|+|++++.++..+
T Consensus 181 -----------~gi~~~ilRp~~v~Gp~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~v~V~Dva~a~~~~l~~~ 245 (351)
T PLN02650 181 -----------NGLDFISIIPTLVVGPFISTSMPP-SLITALSLITGNEAHYSIIKQGQFVHLDDLCNAHIFLFEHP 245 (351)
T ss_pred -----------cCCeEEEECCCceECCCCCCCCCc-cHHHHHHHhcCCccccCcCCCcceeeHHHHHHHHHHHhcCc
Confidence 468888899998888754321111 01110000 011124789999999999998654
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.5e-17 Score=140.96 Aligned_cols=143 Identities=24% Similarity=0.309 Sum_probs=115.2
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.+.+++|+++||||++|||+++++.|+++|++|++++|+.+.+++..+++.. .+.++.++.+|+++.+++++++
T Consensus 11 ~~~l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~------~~~~~~~~~~Dl~~~~~v~~~v 84 (169)
T PRK06720 11 KMKLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITN------LGGEALFVSYDMEKQGDWQRVI 84 (169)
T ss_pred ccccCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh------cCCcEEEEEccCCCHHHHHHHH
Confidence 3458999999999999999999999999999999999998877777666653 2456778999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCC---CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-------CCeEEEEcCCCcc
Q psy13409 91 QEILDNESAIHLLINNAGVMMCP---RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-------PARIINLSSLAHT 160 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~---~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-------~g~IV~iSS~~~~ 160 (330)
+++.+.++++|++|||||..... .+.+.++ ++ .+|+.+.+..++.+.+.|.+++ .|++-.|||.+..
T Consensus 85 ~~~~~~~G~iDilVnnAG~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (169)
T PRK06720 85 SITLNAFSRIDMLFQNAGLYKIDSIFSRQQEND-SN--VLCINDVWIEIKQLTSSFMKQQEEVVLSDLPIFGIIGTKGQS 161 (169)
T ss_pred HHHHHHcCCCCEEEECCCcCCCCCcccccchhH-hh--ceeccHHHHHHHHHHHHHHhcCCEEEeecCceeeEecccccc
Confidence 99999999999999999986532 2323333 33 5677777888888888877754 5778888887655
Q ss_pred cC
Q psy13409 161 WG 162 (330)
Q Consensus 161 ~~ 162 (330)
+.
T Consensus 162 ~~ 163 (169)
T PRK06720 162 FH 163 (169)
T ss_pred ce
Confidence 44
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.7e-16 Score=151.01 Aligned_cols=165 Identities=16% Similarity=0.146 Sum_probs=119.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHH-HHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETA-ADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~-~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
.+++|+++||||+|+||++++++|+++|++|+++.|+.+..... ...+.. ...++.++.+|+++.++++.+++
T Consensus 7 ~~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~~Dl~d~~~~~~~~~ 80 (342)
T PLN02214 7 SPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEG------GKERLILCKADLQDYEALKAAID 80 (342)
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhC------CCCcEEEEecCcCChHHHHHHHh
Confidence 36789999999999999999999999999999999986543221 112211 12468889999999998877765
Q ss_pred HHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc-cc
Q psy13409 92 EILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF-ED 170 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~-~~ 170 (330)
.+|++||+|+... +++...+++|+.++.++++++.+ .+.++||++||..+.++.+.... .+
T Consensus 81 -------~~d~Vih~A~~~~-------~~~~~~~~~nv~gt~~ll~aa~~----~~v~r~V~~SS~~avyg~~~~~~~~~ 142 (342)
T PLN02214 81 -------GCDGVFHTASPVT-------DDPEQMVEPAVNGAKFVINAAAE----AKVKRVVITSSIGAVYMDPNRDPEAV 142 (342)
T ss_pred -------cCCEEEEecCCCC-------CCHHHHHHHHHHHHHHHHHHHHh----cCCCEEEEeccceeeeccCCCCCCcc
Confidence 3799999998641 34577899999998888887654 34469999999876665322111 11
Q ss_pred ccccc------CCCcchhhHHhHHHHHHHHHHHHHHh
Q psy13409 171 INLEK------GYSATGAYGRSKLANILFTTELAKRL 201 (330)
Q Consensus 171 ~~~~~------~~~~~~~Y~asK~a~~~~~~~la~~~ 201 (330)
+++.. +......|+.||.+.+.+++.++++.
T Consensus 143 ~~E~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~ 179 (342)
T PLN02214 143 VDESCWSDLDFCKNTKNWYCYGKMVAEQAAWETAKEK 179 (342)
T ss_pred cCcccCCChhhccccccHHHHHHHHHHHHHHHHHHHc
Confidence 22221 11245689999999999988887653
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-16 Score=152.63 Aligned_cols=172 Identities=12% Similarity=0.129 Sum_probs=120.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEE-EEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVI-MACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vi-l~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
|++|||||+|+||.++++.|+++|+.++ +++|.... ... ..+... ....++.++.+|++|.++++++++..
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~-~~~-~~~~~~----~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 73 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYA-GNL-MSLAPV----AQSERFAFEKVDICDRAELARVFTEH-- 73 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccc-cch-hhhhhc----ccCCceEEEECCCcChHHHHHHHhhc--
Confidence 5899999999999999999999998754 45544221 111 111110 01346778899999999988887652
Q ss_pred cCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHh---h--hCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 96 NESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRII---K--SAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~---~--~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
.+|++||+||.... ..+.+.++..+++|+.+++++++++.+.+. . .+..++|++||.. .++.......+
T Consensus 74 ---~~D~Vih~A~~~~~--~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~-vyg~~~~~~~~ 147 (355)
T PRK10217 74 ---QPDCVMHLAAESHV--DRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDE-VYGDLHSTDDF 147 (355)
T ss_pred ---CCCEEEECCcccCc--chhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchh-hcCCCCCCCCC
Confidence 58999999997532 233456788999999999999999887532 1 1235899998864 34421111123
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhc
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQ 202 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~ 202 (330)
+++..+..+...|+.||.+.+.+++.++++++
T Consensus 148 ~~E~~~~~p~s~Y~~sK~~~e~~~~~~~~~~~ 179 (355)
T PRK10217 148 FTETTPYAPSSPYSASKASSDHLVRAWLRTYG 179 (355)
T ss_pred cCCCCCCCCCChhHHHHHHHHHHHHHHHHHhC
Confidence 44444455677899999999999999988754
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.6e-17 Score=154.40 Aligned_cols=174 Identities=16% Similarity=0.120 Sum_probs=122.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHH-HHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAE-TAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~-~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
|++|||||+|+||.+++++|+++|++|++++|+.+... ...+.+...... ..+.++.++.+|++|.+++.++++..
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~d~~~l~~~~~~~-- 77 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHN-VNKARMKLHYGDLTDSSNLRRIIDEI-- 77 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhcccc-ccccceeEEEeccCCHHHHHHHHHhC--
Confidence 68999999999999999999999999999999764210 111111110000 01346889999999999988888764
Q ss_pred cCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccccccc
Q psy13409 96 NESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEK 175 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~ 175 (330)
.+|++||+|+..... ...+.....+++|+.++.++++++.+.-.+ ...++|++||.. .+|... ..+++...
T Consensus 78 ---~~d~ViH~Aa~~~~~--~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~-~~~~~v~~SS~~-vyg~~~--~~~~~E~~ 148 (343)
T TIGR01472 78 ---KPTEIYNLAAQSHVK--VSFEIPEYTADVDGIGTLRLLEAVRTLGLI-KSVKFYQASTSE-LYGKVQ--EIPQNETT 148 (343)
T ss_pred ---CCCEEEECCcccccc--hhhhChHHHHHHHHHHHHHHHHHHHHhCCC-cCeeEEEeccHH-hhCCCC--CCCCCCCC
Confidence 589999999976432 122334567789999999998887653111 124789998864 455321 12344445
Q ss_pred CCCcchhhHHhHHHHHHHHHHHHHHhc
Q psy13409 176 GYSATGAYGRSKLANILFTTELAKRLQ 202 (330)
Q Consensus 176 ~~~~~~~Y~asK~a~~~~~~~la~~~~ 202 (330)
+..+...|+.||.+.+.+++.++.+++
T Consensus 149 ~~~p~~~Y~~sK~~~e~~~~~~~~~~~ 175 (343)
T TIGR01472 149 PFYPRSPYAAAKLYAHWITVNYREAYG 175 (343)
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHHhC
Confidence 556778999999999999999988765
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=7e-16 Score=147.32 Aligned_cols=170 Identities=19% Similarity=0.085 Sum_probs=117.1
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
.++++++|||||+|+||++++++|+++|++|+++.|+......... +... ....++.++.+|++|.+++..+++
T Consensus 6 ~~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~----~~~~~~~~~~~Dl~d~~~~~~~~~- 79 (338)
T PLN00198 6 PTGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAH-LRAL----QELGDLKIFGADLTDEESFEAPIA- 79 (338)
T ss_pred CCCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH-HHhc----CCCCceEEEEcCCCChHHHHHHHh-
Confidence 3568999999999999999999999999999988887654332211 1110 012368889999999988877664
Q ss_pred HHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCC--Ccccc
Q psy13409 93 ILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGS--MHFED 170 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~--~~~~~ 170 (330)
.+|++||+|+.... ...+.....+++|+.+..++++++.+. .+.+++|++||.+....... .. .+
T Consensus 80 ------~~d~vih~A~~~~~---~~~~~~~~~~~~nv~g~~~ll~a~~~~---~~~~~~v~~SS~~~~g~~~~~~~~-~~ 146 (338)
T PLN00198 80 ------GCDLVFHVATPVNF---ASEDPENDMIKPAIQGVHNVLKACAKA---KSVKRVILTSSAAAVSINKLSGTG-LV 146 (338)
T ss_pred ------cCCEEEEeCCCCcc---CCCChHHHHHHHHHHHHHHHHHHHHhc---CCccEEEEeecceeeeccCCCCCC-ce
Confidence 47999999985321 122334556789999999988887552 13479999999765432110 00 01
Q ss_pred cccc---------cCCCcchhhHHhHHHHHHHHHHHHHHh
Q psy13409 171 INLE---------KGYSATGAYGRSKLANILFTTELAKRL 201 (330)
Q Consensus 171 ~~~~---------~~~~~~~~Y~asK~a~~~~~~~la~~~ 201 (330)
++.. ...++...|+.||.+.+.+++.+++++
T Consensus 147 ~~E~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~ 186 (338)
T PLN00198 147 MNEKNWTDVEFLTSEKPPTWGYPASKTLAEKAAWKFAEEN 186 (338)
T ss_pred eccccCCchhhhhhcCCccchhHHHHHHHHHHHHHHHHhc
Confidence 1110 123456679999999999999887653
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.6e-16 Score=147.76 Aligned_cols=172 Identities=17% Similarity=0.089 Sum_probs=118.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
.-+++++|||||+|+||.+++++|+++|++|++++|+.+........+. ...++.++.+|+++.++++.+++
T Consensus 7 ~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~-------~~~~~~~~~~Dl~~~~~~~~~~~- 78 (353)
T PLN02896 7 ESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWK-------EGDRLRLFRADLQEEGSFDEAVK- 78 (353)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhc-------cCCeEEEEECCCCCHHHHHHHHc-
Confidence 3578899999999999999999999999999999998765544433321 13568899999999988877764
Q ss_pred HHhcCCCeeEEEEcCCCCCCCC---CCChhhH--HHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCc
Q psy13409 93 ILDNESAIHLLINNAGVMMCPR---QLTEDGY--ELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~~---~~~~~~~--~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~ 167 (330)
.+|++||+|+...... ..+.+.+ ...+++|+.+.+++++++.+.. +.+++|++||.+.....+...
T Consensus 79 ------~~d~Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~---~~~~~v~~SS~~vyg~~~~~~ 149 (353)
T PLN02896 79 ------GCDGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSK---TVKRVVFTSSISTLTAKDSNG 149 (353)
T ss_pred ------CCCEEEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcC---CccEEEEEechhhccccccCC
Confidence 3799999999764332 1222222 3466777899888888765531 246899999975433211110
Q ss_pred -c-cccccc--cC-------CCcchhhHHhHHHHHHHHHHHHHHh
Q psy13409 168 -F-EDINLE--KG-------YSATGAYGRSKLANILFTTELAKRL 201 (330)
Q Consensus 168 -~-~~~~~~--~~-------~~~~~~Y~asK~a~~~~~~~la~~~ 201 (330)
+ .++++. .+ .+....|+.||.+.+.+++.+++++
T Consensus 150 ~~~~~~~E~~~~p~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~ 194 (353)
T PLN02896 150 RWRAVVDETCQTPIDHVWNTKASGWVYVLSKLLTEEAAFKYAKEN 194 (353)
T ss_pred CCCCccCcccCCcHHHhhccCCCCccHHHHHHHHHHHHHHHHHHc
Confidence 0 112221 11 1233479999999999998887653
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.7e-16 Score=147.63 Aligned_cols=226 Identities=13% Similarity=0.027 Sum_probs=146.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
+||++|||||+|+||++++++|+++|++|+++.|+........ .+.... ....++.++.+|+++.++++.+++
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~--- 75 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTE-HLLALD---GAKERLHLFKANLLEEGSFDSVVD--- 75 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHH-HHHhcc---CCCCceEEEeccccCcchHHHHHc---
Confidence 4789999999999999999999999999999998865433222 111110 013478899999999888877765
Q ss_pred hcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcc-cCCCCC-cccccc
Q psy13409 95 DNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHT-WGDGSM-HFEDIN 172 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~-~~~~~~-~~~~~~ 172 (330)
.+|++||+|+..... ..+.....+++|+.++.++++++... .+.+++|++||.++. ++.... ...+++
T Consensus 76 ----~~d~Vih~A~~~~~~---~~~~~~~~~~~nv~gt~~ll~a~~~~---~~~~~~v~~SS~~~~~y~~~~~~~~~~~~ 145 (322)
T PLN02662 76 ----GCEGVFHTASPFYHD---VTDPQAELIDPAVKGTLNVLRSCAKV---PSVKRVVVTSSMAAVAYNGKPLTPDVVVD 145 (322)
T ss_pred ----CCCEEEEeCCcccCC---CCChHHHHHHHHHHHHHHHHHHHHhC---CCCCEEEEccCHHHhcCCCcCCCCCCcCC
Confidence 369999999865321 11222467899999988888876542 134699999997642 331110 001222
Q ss_pred cccCCCc------chhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccc
Q psy13409 173 LEKGYSA------TGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKN 246 (330)
Q Consensus 173 ~~~~~~~------~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (330)
+..+..+ ...|+.+|.+.+.+++.++++
T Consensus 146 E~~~~~p~~~~~~~~~Y~~sK~~~E~~~~~~~~~---------------------------------------------- 179 (322)
T PLN02662 146 ETWFSDPAFCEESKLWYVLSKTLAEEAAWKFAKE---------------------------------------------- 179 (322)
T ss_pred cccCCChhHhhcccchHHHHHHHHHHHHHHHHHH----------------------------------------------
Confidence 2221111 247999999988888877654
Q ss_pred cccCCCCCCCCceeEEEeeCcccccCcccccCCC-chhhHHHHH-----HhhhhhccChHHHHHHHHHhhccc
Q psy13409 247 VLFHPPGANITNVNTYAVHPGVVDTELSRHFDSI-IPGTAWLYQ-----RVGGLFIKSPLQGAQTTLYCALDK 313 (330)
Q Consensus 247 ~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~e~a~~~~~l~~~~ 313 (330)
.++++..+.|+.|.+|........ ......... +.....+..++|+|++++.++..+
T Consensus 180 ----------~~~~~~~lRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~ 242 (322)
T PLN02662 180 ----------NGIDMVTINPAMVIGPLLQPTLNTSAEAILNLINGAQTFPNASYRWVDVRDVANAHIQAFEIP 242 (322)
T ss_pred ----------cCCcEEEEeCCcccCCCCCCCCCchHHHHHHHhcCCccCCCCCcCeEEHHHHHHHHHHHhcCc
Confidence 468888889998888754321111 000111100 011223688999999999998654
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-15 Score=144.64 Aligned_cols=172 Identities=22% Similarity=0.235 Sum_probs=124.0
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
.|++|+++||||+|+||.+++++|+++|++|++++|......+..+.+...... ...++.++.+|++++++++.+++.
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~l~~~~~~ 79 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGD--LGDNLVFHKVDLRDKEALEKVFAS 79 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcc--cCccceEEecCcCCHHHHHHHHHh
Confidence 578899999999999999999999999999999987543222222222211100 134678899999999998888765
Q ss_pred HHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccc
Q psy13409 93 ILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDIN 172 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~ 172 (330)
. .+|++||+|+..... .+.+.+...+++|+.++.++++++ .+.+.+++|++||. +.++.. ...+++
T Consensus 80 ~-----~~d~vih~a~~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~Ss~-~vyg~~--~~~~~~ 145 (352)
T PLN02240 80 T-----RFDAVIHFAGLKAVG--ESVAKPLLYYDNNLVGTINLLEVM----AKHGCKKLVFSSSA-TVYGQP--EEVPCT 145 (352)
T ss_pred C-----CCCEEEEccccCCcc--ccccCHHHHHHHHHHHHHHHHHHH----HHcCCCEEEEEccH-HHhCCC--CCCCCC
Confidence 2 689999999975322 233566788999999988887754 33445789999995 444421 122344
Q ss_pred cccCCCcchhhHHhHHHHHHHHHHHHHH
Q psy13409 173 LEKGYSATGAYGRSKLANILFTTELAKR 200 (330)
Q Consensus 173 ~~~~~~~~~~Y~asK~a~~~~~~~la~~ 200 (330)
+..+..+...|+.+|.+.+.+++.++.+
T Consensus 146 E~~~~~~~~~Y~~sK~~~e~~~~~~~~~ 173 (352)
T PLN02240 146 EEFPLSATNPYGRTKLFIEEICRDIHAS 173 (352)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4455566789999999999999988764
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-15 Score=151.95 Aligned_cols=179 Identities=15% Similarity=0.179 Sum_probs=123.9
Q ss_pred cCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhH-------HH---------HHHHHHHHhhcccCCCCe
Q psy13409 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEK-------AE---------TAADDIRTSLKDVKDAGE 72 (330)
Q Consensus 9 ~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~-------l~---------~~~~~l~~~~~~~~~~~~ 72 (330)
.....+++|++|||||+|+||++++++|+++|++|++++|.... .+ +..+.+... .+.+
T Consensus 40 ~~~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~ 114 (442)
T PLN02572 40 GSSSSSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEV-----SGKE 114 (442)
T ss_pred CCCccccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeccccccccccccccccccccchHHHHHHHHHh-----hCCc
Confidence 34456899999999999999999999999999999998753210 00 001111111 1346
Q ss_pred EEEEEccCCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCC-CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCC-Ce
Q psy13409 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCP-RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAP-AR 150 (330)
Q Consensus 73 v~~i~~Dls~~~si~~l~~~i~~~~g~iDvlInnAG~~~~~-~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~-g~ 150 (330)
+.++.+|++|.++++++++.. ++|++||+|+..... ...+.++++..+++|+.+++++++++... +. .+
T Consensus 115 v~~v~~Dl~d~~~v~~~l~~~-----~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~----gv~~~ 185 (442)
T PLN02572 115 IELYVGDICDFEFLSEAFKSF-----EPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEF----APDCH 185 (442)
T ss_pred ceEEECCCCCHHHHHHHHHhC-----CCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHh----CCCcc
Confidence 889999999999998888763 589999999764322 23344556777899999999998876542 32 48
Q ss_pred EEEEcCCCcccCCCCC-ccc-cccc------c---cCCCcchhhHHhHHHHHHHHHHHHHHhc
Q psy13409 151 IINLSSLAHTWGDGSM-HFE-DINL------E---KGYSATGAYGRSKLANILFTTELAKRLQ 202 (330)
Q Consensus 151 IV~iSS~~~~~~~~~~-~~~-~~~~------~---~~~~~~~~Y~asK~a~~~~~~~la~~~~ 202 (330)
+|++||.. .+|.... ..+ +++. + .+..+...|+.||.+.+.+++.++..++
T Consensus 186 ~V~~SS~~-vYG~~~~~~~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~g 247 (442)
T PLN02572 186 LVKLGTMG-EYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWG 247 (442)
T ss_pred EEEEecce-ecCCCCCCCcccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcC
Confidence 99999975 4553211 001 0110 1 1234456899999999999999988877
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.8e-15 Score=140.48 Aligned_cols=164 Identities=17% Similarity=0.138 Sum_probs=114.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHCC--CEEEEEecChh--HHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRG--ARVIMACRSLE--KAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G--~~Vil~~R~~~--~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
+++||||+|+||.+++++|++.| ++|++.+|... ..+. .+.+. ...++.++.+|+++++++.++++..
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~~~Dl~~~~~~~~~~~~~ 72 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLEN-LADLE-------DNPRYRFVKGDIGDRELVSRLFTEH 72 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhh-hhhhc-------cCCCcEEEEcCCcCHHHHHHHHhhc
Confidence 48999999999999999999987 68888876421 1111 11111 1346788999999999998887653
Q ss_pred HhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccccc
Q psy13409 94 LDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINL 173 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~ 173 (330)
.+|++||+|+.... ..+.+.++..+++|+.++..+++.+.+.+. +.++|++||.. .++..... .+.+.
T Consensus 73 -----~~d~vi~~a~~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~---~~~~i~~Ss~~-v~g~~~~~-~~~~e 140 (317)
T TIGR01181 73 -----QPDAVVHFAAESHV--DRSISGPAAFIETNVVGTYTLLEAVRKYWH---EFRFHHISTDE-VYGDLEKG-DAFTE 140 (317)
T ss_pred -----CCCEEEEcccccCc--hhhhhCHHHHHHHHHHHHHHHHHHHHhcCC---CceEEEeeccc-eeCCCCCC-CCcCC
Confidence 58999999997642 223345667899999998888877655322 35899999864 33321110 02233
Q ss_pred ccCCCcchhhHHhHHHHHHHHHHHHHHh
Q psy13409 174 EKGYSATGAYGRSKLANILFTTELAKRL 201 (330)
Q Consensus 174 ~~~~~~~~~Y~asK~a~~~~~~~la~~~ 201 (330)
..+..+...|+.+|.+.+.+++.++.+.
T Consensus 141 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~ 168 (317)
T TIGR01181 141 TTPLAPSSPYSASKAASDHLVRAYHRTY 168 (317)
T ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHh
Confidence 3344456789999999999999887753
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.9e-15 Score=142.25 Aligned_cols=231 Identities=13% Similarity=0.037 Sum_probs=146.1
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
...++|++|||||+|+||.++++.|+++|++|+++.|+.+..+.+ +.+...........++.++.+|++|.+++.++++
T Consensus 49 ~~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l-~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~ 127 (367)
T PLN02686 49 ADAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKL-REMEMFGEMGRSNDGIWTVMANLTEPESLHEAFD 127 (367)
T ss_pred cCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHHhhhccccccCCceEEEEcCCCCHHHHHHHHH
Confidence 357899999999999999999999999999999988887655443 2221100000002357889999999998888776
Q ss_pred HHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCC-cccCCCCCcc--
Q psy13409 92 EILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLA-HTWGDGSMHF-- 168 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~-~~~~~~~~~~-- 168 (330)
. +|.+||.++...+..... ......++|+.+..++++++... .+-.++|++||.+ ..++......
T Consensus 128 ~-------~d~V~hlA~~~~~~~~~~--~~~~~~~~nv~gt~~llea~~~~---~~v~r~V~~SS~~~~vyg~~~~~~~~ 195 (367)
T PLN02686 128 G-------CAGVFHTSAFVDPAGLSG--YTKSMAELEAKASENVIEACVRT---ESVRKCVFTSSLLACVWRQNYPHDLP 195 (367)
T ss_pred h-------ccEEEecCeeeccccccc--ccchhhhhhHHHHHHHHHHHHhc---CCccEEEEeccHHHhcccccCCCCCC
Confidence 4 588889888654321111 11244567888877776664321 1346899999974 2333110000
Q ss_pred cccccc------cCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcc
Q psy13409 169 EDINLE------KGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNH 242 (330)
Q Consensus 169 ~~~~~~------~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (330)
..++.. .+..+...|+.||++.+.+++.++++
T Consensus 196 ~~i~E~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~------------------------------------------ 233 (367)
T PLN02686 196 PVIDEESWSDESFCRDNKLWYALGKLKAEKAAWRAARG------------------------------------------ 233 (367)
T ss_pred cccCCCCCCChhhcccccchHHHHHHHHHHHHHHHHHh------------------------------------------
Confidence 011111 12224457999999999999887664
Q ss_pred cccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH---HH--hhhhhccChHHHHHHHHHhhcc
Q psy13409 243 YCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY---QR--VGGLFIKSPLQGAQTTLYCALD 312 (330)
Q Consensus 243 ~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~e~a~~~~~l~~~ 312 (330)
.|+++++|.|+.|.+|......... ...... .. -+...+..++|+|++++.++..
T Consensus 234 --------------~gl~~v~lRp~~vyGp~~~~~~~~~-~~~~~~g~~~~~g~g~~~~v~V~Dva~A~~~al~~ 293 (367)
T PLN02686 234 --------------KGLKLATICPALVTGPGFFRRNSTA-TIAYLKGAQEMLADGLLATADVERLAEAHVCVYEA 293 (367)
T ss_pred --------------cCceEEEEcCCceECCCCCCCCChh-HHHHhcCCCccCCCCCcCeEEHHHHHHHHHHHHhc
Confidence 4789999999999888532211100 011110 01 1222367899999999998853
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-14 Score=139.89 Aligned_cols=174 Identities=19% Similarity=0.164 Sum_probs=119.3
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
+.+++|+++||||+|.||.+++++|+++|++|++++|...........+...... ....++.++.+|+++.++++.+++
T Consensus 11 ~~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Di~d~~~l~~~~~ 89 (348)
T PRK15181 11 LVLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSE-EQWSRFIFIQGDIRKFTDCQKACK 89 (348)
T ss_pred ccccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhcccc-ccCCceEEEEccCCCHHHHHHHhh
Confidence 5678899999999999999999999999999999998654322222222111000 012468899999999887776664
Q ss_pred HHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccc
Q psy13409 92 EILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDI 171 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~ 171 (330)
.+|++||.|+...... ...+....+++|+.++.++++.+ .+.+..++|++||.. .++.... .++
T Consensus 90 -------~~d~ViHlAa~~~~~~--~~~~~~~~~~~Nv~gt~nll~~~----~~~~~~~~v~~SS~~-vyg~~~~--~~~ 153 (348)
T PRK15181 90 -------NVDYVLHQAALGSVPR--SLKDPIATNSANIDGFLNMLTAA----RDAHVSSFTYAASSS-TYGDHPD--LPK 153 (348)
T ss_pred -------CCCEEEECccccCchh--hhhCHHHHHHHHHHHHHHHHHHH----HHcCCCeEEEeechH-hhCCCCC--CCC
Confidence 3799999999754321 22334567889999988887765 334456999999864 3442111 112
Q ss_pred ccccCCCcchhhHHhHHHHHHHHHHHHHHhc
Q psy13409 172 NLEKGYSATGAYGRSKLANILFTTELAKRLQ 202 (330)
Q Consensus 172 ~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~ 202 (330)
....+..+...|+.+|.+.+.+++.++.+.+
T Consensus 154 ~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~~ 184 (348)
T PRK15181 154 IEERIGRPLSPYAVTKYVNELYADVFARSYE 184 (348)
T ss_pred CCCCCCCCCChhhHHHHHHHHHHHHHHHHhC
Confidence 2222334556899999999999888766543
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.1e-15 Score=135.78 Aligned_cols=207 Identities=19% Similarity=0.174 Sum_probs=131.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCH-HHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSL-KSVRKCAQ 91 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~-~si~~l~~ 91 (330)
..++++++||||+|+||++++++|+++|++|+++.|+.+++.... . ...++.++.+|+++. +++ .+
T Consensus 14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~---~-------~~~~~~~~~~Dl~d~~~~l---~~ 80 (251)
T PLN00141 14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSL---P-------QDPSLQIVRADVTEGSDKL---VE 80 (251)
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhc---c-------cCCceEEEEeeCCCCHHHH---HH
Confidence 356899999999999999999999999999999999976543221 0 123688899999983 332 22
Q ss_pred HHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccc
Q psy13409 92 EILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDI 171 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~ 171 (330)
.+. ..+|++|+++|....... ...+++|+.++.++++++ .+.+.++||++||... ++...
T Consensus 81 ~~~---~~~d~vi~~~g~~~~~~~------~~~~~~n~~~~~~ll~a~----~~~~~~~iV~iSS~~v-~g~~~------ 140 (251)
T PLN00141 81 AIG---DDSDAVICATGFRRSFDP------FAPWKVDNFGTVNLVEAC----RKAGVTRFILVSSILV-NGAAM------ 140 (251)
T ss_pred Hhh---cCCCEEEECCCCCcCCCC------CCceeeehHHHHHHHHHH----HHcCCCEEEEEccccc-cCCCc------
Confidence 221 258999999986432111 112467888877777775 3455689999999753 33100
Q ss_pred ccccCCCcchhhHHhHHHHHHHHHHHHHH--hcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 172 NLEKGYSATGAYGRSKLANILFTTELAKR--LQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 172 ~~~~~~~~~~~Y~asK~a~~~~~~~la~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
+.+....|...|.....+...+..| +.
T Consensus 141 ----~~~~~~~~~~~~~~~~~~~~k~~~e~~l~----------------------------------------------- 169 (251)
T PLN00141 141 ----GQILNPAYIFLNLFGLTLVAKLQAEKYIR----------------------------------------------- 169 (251)
T ss_pred ----ccccCcchhHHHHHHHHHHHHHHHHHHHH-----------------------------------------------
Confidence 0012234666565444333222222 23
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccc
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKC 315 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~ 315 (330)
. .|++++.|.||++.++............ .... ...+++|+|+.++.++.++..
T Consensus 170 ---~---~gi~~~iirpg~~~~~~~~~~~~~~~~~----~~~~--~~i~~~dvA~~~~~~~~~~~~ 223 (251)
T PLN00141 170 ---K---SGINYTIVRPGGLTNDPPTGNIVMEPED----TLYE--GSISRDQVAEVAVEALLCPES 223 (251)
T ss_pred ---h---cCCcEEEEECCCccCCCCCceEEECCCC----cccc--CcccHHHHHHHHHHHhcChhh
Confidence 3 6899999999999776432111000000 0011 147999999999999977654
|
|
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-14 Score=131.02 Aligned_cols=221 Identities=21% Similarity=0.165 Sum_probs=154.8
Q ss_pred EEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhcCC
Q psy13409 19 AIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNES 98 (330)
Q Consensus 19 aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~~g 98 (330)
||||||+|.||.+++++|+++|+.|+...|.......... ..++.++.+|+.+.++++++++..
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~-----------~~~~~~~~~dl~~~~~~~~~~~~~----- 64 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEEK-----------KLNVEFVIGDLTDKEQLEKLLEKA----- 64 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHHH-----------HTTEEEEESETTSHHHHHHHHHHH-----
T ss_pred EEEEccCCHHHHHHHHHHHHcCCccccccccccccccccc-----------cceEEEEEeecccccccccccccc-----
Confidence 7999999999999999999999998888887654322211 126889999999999999998876
Q ss_pred CeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccccCCC
Q psy13409 99 AIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYS 178 (330)
Q Consensus 99 ~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~~~ 178 (330)
.+|.+||+|+... ...+.......++.|+.+..++++.+ .+.+..++|++|| .+.++.. ...+++...+..
T Consensus 65 ~~d~vi~~a~~~~--~~~~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~~i~~sS-~~~y~~~--~~~~~~e~~~~~ 135 (236)
T PF01370_consen 65 NIDVVIHLAAFSS--NPESFEDPEEIIEANVQGTRNLLEAA----REAGVKRFIFLSS-ASVYGDP--DGEPIDEDSPIN 135 (236)
T ss_dssp TESEEEEEBSSSS--HHHHHHSHHHHHHHHHHHHHHHHHHH----HHHTTSEEEEEEE-GGGGTSS--SSSSBETTSGCC
T ss_pred CceEEEEeecccc--cccccccccccccccccccccccccc----ccccccccccccc-ccccccc--cccccccccccc
Confidence 7999999999753 11223556677888888865555554 4455579999999 5566643 233445555556
Q ss_pred cchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCCCCCCc
Q psy13409 179 ATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGANITN 258 (330)
Q Consensus 179 ~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (330)
+...|+.+|...+.+++.++++ .+
T Consensus 136 ~~~~Y~~~K~~~e~~~~~~~~~--------------------------------------------------------~~ 159 (236)
T PF01370_consen 136 PLSPYGASKRAAEELLRDYAKK--------------------------------------------------------YG 159 (236)
T ss_dssp HSSHHHHHHHHHHHHHHHHHHH--------------------------------------------------------HT
T ss_pred cccccccccccccccccccccc--------------------------------------------------------cc
Confidence 7778999999999999988775 36
Q ss_pred eeEEEeeCcccccCcccccCCCchhhHHHH-HHh-hh-----------hhccChHHHHHHHHHhhccccccccCceecc
Q psy13409 259 VNTYAVHPGVVDTELSRHFDSIIPGTAWLY-QRV-GG-----------LFIKSPLQGAQTTLYCALDKKCERETGLYYA 324 (330)
Q Consensus 259 i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~-~~~-~~-----------~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~ 324 (330)
+++..+.|+.|-.+. ............+. ... +. .-+...+|+|++++.++..+. ..|..|+
T Consensus 160 ~~~~~~R~~~vyG~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~yN 234 (236)
T PF01370_consen 160 LRVTILRPPNVYGPG-NPNNNSSSFLPSLIRQALKGKPIKIPGDGSQVRDFIHVDDLAEAIVAALENPK---AAGGIYN 234 (236)
T ss_dssp SEEEEEEESEEESTT-SSSSSTSSHHHHHHHHHHTTSSEEEESTSSCEEEEEEHHHHHHHHHHHHHHSC---TTTEEEE
T ss_pred ccccccccccccccc-ccccccccccchhhHHhhcCCcccccCCCCCccceEEHHHHHHHHHHHHhCCC---CCCCEEE
Confidence 888999999887776 11111111111121 111 11 115678999999999997654 3455554
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-14 Score=138.44 Aligned_cols=169 Identities=15% Similarity=0.164 Sum_probs=117.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHCCCE-EEEEecCh--hHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRGAR-VIMACRSL--EKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G~~-Vil~~R~~--~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
++|||||+|+||.+++++|+++|+. |+.+++.. ...+... .+. ...++.++.+|++|.+++.+++++.
T Consensus 2 kilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~Dl~d~~~~~~~~~~~- 72 (352)
T PRK10084 2 KILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLA-DVS-------DSERYVFEHADICDRAELDRIFAQH- 72 (352)
T ss_pred eEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccchHHHHH-hcc-------cCCceEEEEecCCCHHHHHHHHHhc-
Confidence 6999999999999999999999976 55555532 1122111 110 1346788999999999998888652
Q ss_pred hcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhh-----CCCeEEEEcCCCcccCCCC-Cc-
Q psy13409 95 DNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKS-----APARIINLSSLAHTWGDGS-MH- 167 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~-----~~g~IV~iSS~~~~~~~~~-~~- 167 (330)
.+|++||+||..... .+....+..+++|+.++.++++.+.+.|... +..++|++||.. .++... +.
T Consensus 73 ----~~d~vih~A~~~~~~--~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~-vyg~~~~~~~ 145 (352)
T PRK10084 73 ----QPDAVMHLAAESHVD--RSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDE-VYGDLPHPDE 145 (352)
T ss_pred ----CCCEEEECCcccCCc--chhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchh-hcCCCCcccc
Confidence 689999999975322 1223456789999999999999998765321 235899998865 344210 00
Q ss_pred ------ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhc
Q psy13409 168 ------FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQ 202 (330)
Q Consensus 168 ------~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~ 202 (330)
..++++..+..+...|+.||.+.+.+++.++.+++
T Consensus 146 ~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~g 186 (352)
T PRK10084 146 VENSEELPLFTETTAYAPSSPYSASKASSDHLVRAWLRTYG 186 (352)
T ss_pred ccccccCCCccccCCCCCCChhHHHHHHHHHHHHHHHHHhC
Confidence 00123333445667899999999999999988765
|
|
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.9e-14 Score=134.85 Aligned_cols=166 Identities=19% Similarity=0.160 Sum_probs=115.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
+++|||||+|+||.+++++|+++|++|++++|...........+.+. .+.++.++.+|++|.+++.++++.
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~d~~~~~~~~~~---- 71 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERL-----GGKHPTFVEGDIRNEALLTEILHD---- 71 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHh-----cCCCceEEEccCCCHHHHHHHHhc----
Confidence 36999999999999999999999999999876533222222222221 234567889999999988877653
Q ss_pred CCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccccC
Q psy13409 97 ESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKG 176 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~ 176 (330)
..+|++||+||...... ..+.....+.+|+.++.++++++ .+.+.+++|++||.. .++... ..+++...+
T Consensus 72 -~~~d~vvh~a~~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~Ss~~-~yg~~~--~~~~~E~~~ 141 (338)
T PRK10675 72 -HAIDTVIHFAGLKAVGE--SVQKPLEYYDNNVNGTLRLISAM----RAANVKNLIFSSSAT-VYGDQP--KIPYVESFP 141 (338)
T ss_pred -CCCCEEEECCccccccc--hhhCHHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccHH-hhCCCC--CCccccccC
Confidence 36899999998764221 22334567889999988877654 444557899999964 444211 112333333
Q ss_pred C-CcchhhHHhHHHHHHHHHHHHHHh
Q psy13409 177 Y-SATGAYGRSKLANILFTTELAKRL 201 (330)
Q Consensus 177 ~-~~~~~Y~asK~a~~~~~~~la~~~ 201 (330)
. .+...|+.+|++.+.++++++.+.
T Consensus 142 ~~~p~~~Y~~sK~~~E~~~~~~~~~~ 167 (338)
T PRK10675 142 TGTPQSPYGKSKLMVEQILTDLQKAQ 167 (338)
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHhc
Confidence 2 346789999999999999987653
|
|
| >COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2e-14 Score=132.30 Aligned_cols=184 Identities=18% Similarity=0.177 Sum_probs=140.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCC--EEEEEecCh--hHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGA--RVIMACRSL--EKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~--~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
+++|||||+|.||.++++.++++.. +|+.++.-. ..++.+ +.+. ...+..++++|+.|.+.+.+++++
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l-~~~~-------~~~~~~fv~~DI~D~~~v~~~~~~ 72 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENL-ADVE-------DSPRYRFVQGDICDRELVDRLFKE 72 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHH-Hhhh-------cCCCceEEeccccCHHHHHHHHHh
Confidence 5799999999999999999998864 577777632 122222 2221 357899999999999999888875
Q ss_pred HHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccc
Q psy13409 93 ILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDIN 172 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~ 172 (330)
- .+|+++|-|+=+.. +-+..+....+++|+.|++.++.++.....+ -+++.||+- ..+|.-...-..++
T Consensus 73 ~-----~~D~VvhfAAESHV--DRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~---frf~HISTD-EVYG~l~~~~~~Ft 141 (340)
T COG1088 73 Y-----QPDAVVHFAAESHV--DRSIDGPAPFIQTNVVGTYTLLEAARKYWGK---FRFHHISTD-EVYGDLGLDDDAFT 141 (340)
T ss_pred c-----CCCeEEEechhccc--cccccChhhhhhcchHHHHHHHHHHHHhccc---ceEEEeccc-cccccccCCCCCcc
Confidence 3 68999999986543 3355667888999999999999998776532 478999874 35554222222355
Q ss_pred cccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 173 LEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 173 ~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
+..++.+.++|++||||-..|++++.+-++ .++..++..|-||-.-.
T Consensus 142 E~tp~~PsSPYSASKAasD~lVray~~TYg-----------------------------lp~~ItrcSNNYGPyqf 188 (340)
T COG1088 142 ETTPYNPSSPYSASKAASDLLVRAYVRTYG-----------------------------LPATITRCSNNYGPYQF 188 (340)
T ss_pred cCCCCCCCCCcchhhhhHHHHHHHHHHHcC-----------------------------CceEEecCCCCcCCCcC
Confidence 677889999999999999999999999999 68888899999976543
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=99.61 E-value=6e-14 Score=132.37 Aligned_cols=155 Identities=23% Similarity=0.185 Sum_probs=111.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
++++||||+|+||.++++.|+++|++|++++|+.+..... ....+.++.+|+++.+++.++++
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~------------~~~~~~~~~~D~~~~~~l~~~~~----- 63 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNL------------EGLDVEIVEGDLRDPASLRKAVA----- 63 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCcccccc------------ccCCceEEEeeCCCHHHHHHHHh-----
Confidence 4799999999999999999999999999999986543211 12357889999999988877764
Q ss_pred CCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccccC
Q psy13409 97 ESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKG 176 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~ 176 (330)
.+|++||+|+.... ..++++..+++|+.++.++++.+.+ .+.+++|++||......... ..+.+...+
T Consensus 64 --~~d~vi~~a~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~--~~~~~e~~~ 131 (328)
T TIGR03466 64 --GCRALFHVAADYRL----WAPDPEEMYAANVEGTRNLLRAALE----AGVERVVYTSSVATLGVRGD--GTPADETTP 131 (328)
T ss_pred --CCCEEEEeceeccc----CCCCHHHHHHHHHHHHHHHHHHHHH----hCCCeEEEEechhhcCcCCC--CCCcCccCC
Confidence 46999999985421 2234567888999998888777643 44579999999765332111 112222222
Q ss_pred CC---cchhhHHhHHHHHHHHHHHHHH
Q psy13409 177 YS---ATGAYGRSKLANILFTTELAKR 200 (330)
Q Consensus 177 ~~---~~~~Y~asK~a~~~~~~~la~~ 200 (330)
.. ....|+.+|.+.+.+++.++.+
T Consensus 132 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~ 158 (328)
T TIGR03466 132 SSLDDMIGHYKRSKFLAEQAALEMAAE 158 (328)
T ss_pred CCcccccChHHHHHHHHHHHHHHHHHh
Confidence 21 2457999999999999988764
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-14 Score=133.66 Aligned_cols=161 Identities=19% Similarity=0.202 Sum_probs=128.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
+++|||||+|-||.+++.+|++.|++|+++++......+..... .+.+++.|+.|.+-+++++++.
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~~-----------~~~f~~gDi~D~~~L~~vf~~~--- 66 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKL-----------QFKFYEGDLLDRALLTAVFEEN--- 66 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhhc-----------cCceEEeccccHHHHHHHHHhc---
Confidence 57999999999999999999999999999998766544433221 1578999999999888888764
Q ss_pred CCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccccC
Q psy13409 97 ESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKG 176 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~ 176 (330)
+||.+||-||.....+ +.+.....++.|+.|++.|+++ |++.+-..| ++||.++.+|.+. ..|+++..+
T Consensus 67 --~idaViHFAa~~~VgE--Sv~~Pl~Yy~NNv~gTl~Ll~a----m~~~gv~~~-vFSStAavYG~p~--~~PI~E~~~ 135 (329)
T COG1087 67 --KIDAVVHFAASISVGE--SVQNPLKYYDNNVVGTLNLIEA----MLQTGVKKF-IFSSTAAVYGEPT--TSPISETSP 135 (329)
T ss_pred --CCCEEEECccccccch--hhhCHHHHHhhchHhHHHHHHH----HHHhCCCEE-EEecchhhcCCCC--CcccCCCCC
Confidence 7999999999765433 4466677889999997777665 454554454 4677788899644 377888888
Q ss_pred CCcchhhHHhHHHHHHHHHHHHHHhc
Q psy13409 177 YSATGAYGRSKLANILFTTELAKRLQ 202 (330)
Q Consensus 177 ~~~~~~Y~asK~a~~~~~~~la~~~~ 202 (330)
..+..+|+.||...+.+.+.+++...
T Consensus 136 ~~p~NPYG~sKlm~E~iL~d~~~a~~ 161 (329)
T COG1087 136 LAPINPYGRSKLMSEEILRDAAKANP 161 (329)
T ss_pred CCCCCcchhHHHHHHHHHHHHHHhCC
Confidence 88999999999999999999998866
|
|
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.3e-14 Score=133.10 Aligned_cols=234 Identities=18% Similarity=0.119 Sum_probs=151.3
Q ss_pred EEEcCCCchHHHHHHHHHHCC--CEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhcC
Q psy13409 20 IVTGSNTGIGKCTANELAKRG--ARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNE 97 (330)
Q Consensus 20 LITGas~gIG~aia~~L~~~G--~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~~ 97 (330)
|||||+|.||.+|+++|+++| ++|.++++...... ...+. ......++.+|++|.++++++++.
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~--~~~~~-------~~~~~~~~~~Di~d~~~l~~a~~g----- 66 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKF--LKDLQ-------KSGVKEYIQGDITDPESLEEALEG----- 66 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEccccccccc--chhhh-------cccceeEEEeccccHHHHHHHhcC-----
Confidence 699999999999999999999 78998888765321 11111 122333899999999999888763
Q ss_pred CCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCC-CCcccccccccC
Q psy13409 98 SAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDG-SMHFEDINLEKG 176 (330)
Q Consensus 98 g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~-~~~~~~~~~~~~ 176 (330)
.|++||+|+...... ....+..+++|+.|+-++++++. +.+-.++|++||.+...... +......+...+
T Consensus 67 --~d~V~H~Aa~~~~~~---~~~~~~~~~vNV~GT~nvl~aa~----~~~VkrlVytSS~~vv~~~~~~~~~~~~dE~~~ 137 (280)
T PF01073_consen 67 --VDVVFHTAAPVPPWG---DYPPEEYYKVNVDGTRNVLEAAR----KAGVKRLVYTSSISVVFDNYKGDPIINGDEDTP 137 (280)
T ss_pred --CceEEEeCccccccC---cccHHHHHHHHHHHHHHHHHHHH----HcCCCEEEEEcCcceeEeccCCCCcccCCcCCc
Confidence 599999999765432 34567788999999777776664 44568999999998766511 111111112222
Q ss_pred --CCcchhhHHhHHHHHHHHHHHHH-HhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCC
Q psy13409 177 --YSATGAYGRSKLANILFTTELAK-RLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPG 253 (330)
Q Consensus 177 --~~~~~~Y~asK~a~~~~~~~la~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (330)
......|+.||+..+.++..... ++.
T Consensus 138 ~~~~~~~~Y~~SK~~AE~~V~~a~~~~~~--------------------------------------------------- 166 (280)
T PF01073_consen 138 YPSSPLDPYAESKALAEKAVLEANGSELK--------------------------------------------------- 166 (280)
T ss_pred ccccccCchHHHHHHHHHHHHhhcccccc---------------------------------------------------
Confidence 22555899999998888876543 111
Q ss_pred CCCCceeEEEeeCcccccCcccccCCCchhhHHH---HHHhhh----hhccChHHHHHHHHHhhcc---c-cccccCcee
Q psy13409 254 ANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWL---YQRVGG----LFIKSPLQGAQTTLYCALD---K-KCERETGLY 322 (330)
Q Consensus 254 ~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~e~a~~~~~l~~~---~-~~~~~~G~~ 322 (330)
+...+++.+|.|..|-.|............... ....+. ..+..++++|.+.+..+.. + ......|+.
T Consensus 167 -~g~~l~t~~lRP~~IyGp~d~~~~~~~~~~~~~g~~~~~~g~~~~~~~~vyV~NvA~ahvlA~~~L~~~~~~~~~~G~~ 245 (280)
T PF01073_consen 167 -NGGRLRTCALRPAGIYGPGDQRLVPRLVKMVRSGLFLFQIGDGNNLFDFVYVENVAHAHVLAAQALLEPGKPERVAGQA 245 (280)
T ss_pred -cccceeEEEEeccEEeCcccccccchhhHHHHhcccceeecCCCceECcEeHHHHHHHHHHHHHHhccccccccCCCcE
Confidence 114699999999999887544332221100000 011121 1155699999999876532 1 123567877
Q ss_pred cccCCC
Q psy13409 323 YAKADL 328 (330)
Q Consensus 323 ~~~~~~ 328 (330)
|-..|.
T Consensus 246 y~itd~ 251 (280)
T PF01073_consen 246 YFITDG 251 (280)
T ss_pred EEEECC
Confidence 765543
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.3e-13 Score=128.68 Aligned_cols=235 Identities=17% Similarity=0.119 Sum_probs=142.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHCC--CEEEEEecChhHH---HHHHHHHHHhhcc-cCCC-CeEEEEEccCCCHH------
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRG--ARVIMACRSLEKA---ETAADDIRTSLKD-VKDA-GEVVIRQLDLSSLK------ 84 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G--~~Vil~~R~~~~l---~~~~~~l~~~~~~-~~~~-~~v~~i~~Dls~~~------ 84 (330)
+++||||+|+||.+++++|+++| ++|+++.|+.+.. +++.+.+...... .... .++.++.+|++++.
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~ 80 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA 80 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence 58999999999999999999999 6899999986532 2222222221100 0001 57999999998652
Q ss_pred HHHHHHHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCC
Q psy13409 85 SVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDG 164 (330)
Q Consensus 85 si~~l~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~ 164 (330)
....+. ..+|++||||+..... ..++...++|+.++..+++.+.. .+..++|++||........
T Consensus 81 ~~~~~~-------~~~d~vih~a~~~~~~-----~~~~~~~~~nv~g~~~ll~~a~~----~~~~~~v~iSS~~v~~~~~ 144 (367)
T TIGR01746 81 EWERLA-------ENVDTIVHNGALVNWV-----YPYSELRAANVLGTREVLRLAAS----GRAKPLHYVSTISVLAAID 144 (367)
T ss_pred HHHHHH-------hhCCEEEeCCcEeccC-----CcHHHHhhhhhHHHHHHHHHHhh----CCCceEEEEccccccCCcC
Confidence 222222 3589999999976421 23566778999998877776543 3445699999986543311
Q ss_pred CCc-ccccccc-cCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcc
Q psy13409 165 SMH-FEDINLE-KGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNH 242 (330)
Q Consensus 165 ~~~-~~~~~~~-~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (330)
... .++.+.. ........|+.+|.+.+.+++.++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~-------------------------------------------- 180 (367)
T TIGR01746 145 LSTVTEDDAIVTPPPGLAGGYAQSKWVAELLVREAS-------------------------------------------- 180 (367)
T ss_pred CCCccccccccccccccCCChHHHHHHHHHHHHHHH--------------------------------------------
Confidence 110 1111110 111234579999999988876543
Q ss_pred cccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHH---Hhh--------hhhccChHHHHHHHHHhhc
Q psy13409 243 YCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQ---RVG--------GLFIKSPLQGAQTTLYCAL 311 (330)
Q Consensus 243 ~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~---~~~--------~~~~~~~~e~a~~~~~l~~ 311 (330)
. .|++++.+.||.|.++..............+.. ..+ ..-+..++|+|++++.++.
T Consensus 181 ----------~---~g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~vddva~ai~~~~~ 247 (367)
T TIGR01746 181 ----------D---RGLPVTIVRPGRILGNSYTGAINSSDILWRMVKGCLALGAYPDSPELTEDLTPVDYVARAIVALSS 247 (367)
T ss_pred ----------h---cCCCEEEECCCceeecCCCCCCCchhHHHHHHHHHHHhCCCCCCCccccCcccHHHHHHHHHHHHh
Confidence 2 479999999999987622111111111111100 000 1115678999999999986
Q ss_pred cccccccCceecccC
Q psy13409 312 DKKCERETGLYYAKA 326 (330)
Q Consensus 312 ~~~~~~~~G~~~~~~ 326 (330)
.+. .+.+|..|+-.
T Consensus 248 ~~~-~~~~~~~~~v~ 261 (367)
T TIGR01746 248 QPA-ASAGGPVFHVV 261 (367)
T ss_pred CCC-cccCCceEEec
Confidence 543 22346655543
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.5e-14 Score=140.01 Aligned_cols=158 Identities=18% Similarity=0.206 Sum_probs=132.7
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
.++||++|||||+|.||.++++++++.+. ++++.+|++.++-....+++..+ +..++.++-+|++|.+.++.+++
T Consensus 247 ~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~----~~~~~~~~igdVrD~~~~~~~~~ 322 (588)
T COG1086 247 MLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKF----PELKLRFYIGDVRDRDRVERAME 322 (588)
T ss_pred HcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhC----CCcceEEEecccccHHHHHHHHh
Confidence 37899999999999999999999999987 69999999999999998988765 35789999999999999988887
Q ss_pred HHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccc
Q psy13409 92 EILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDI 171 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~ 171 (330)
.. ++|+++|.|+.-.-+ +=+....+.+.+|+.|+.++..++.. .+-.++|++|+--+.
T Consensus 323 ~~-----kvd~VfHAAA~KHVP--l~E~nP~Eai~tNV~GT~nv~~aa~~----~~V~~~V~iSTDKAV----------- 380 (588)
T COG1086 323 GH-----KVDIVFHAAALKHVP--LVEYNPEEAIKTNVLGTENVAEAAIK----NGVKKFVLISTDKAV----------- 380 (588)
T ss_pred cC-----CCceEEEhhhhccCc--chhcCHHHHHHHhhHhHHHHHHHHHH----hCCCEEEEEecCccc-----------
Confidence 53 789999999976533 12344567789999998888888755 455799999996654
Q ss_pred ccccCCCcchhhHHhHHHHHHHHHHHHHHhc
Q psy13409 172 NLEKGYSATGAYGRSKLANILFTTELAKRLQ 202 (330)
Q Consensus 172 ~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~ 202 (330)
.+.+.|+++|...+.++.+++.+..
T Consensus 381 ------~PtNvmGaTKr~aE~~~~a~~~~~~ 405 (588)
T COG1086 381 ------NPTNVMGATKRLAEKLFQAANRNVS 405 (588)
T ss_pred ------CCchHhhHHHHHHHHHHHHHhhccC
Confidence 4468899999999999999988665
|
|
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.6e-14 Score=130.83 Aligned_cols=162 Identities=21% Similarity=0.224 Sum_probs=115.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhcC
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNE 97 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~~ 97 (330)
++|||||+|+||.++++.|+++|++|++++|...........+.+ ..++..+.+|+++.++++++++.
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~----- 68 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSPEALKRGER-------ITRVTFVEGDLRDRELLDRLFEE----- 68 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccchhhhhhhcc-------ccceEEEECCCCCHHHHHHHHHh-----
Confidence 479999999999999999999999998887654322221111111 12577889999999998888763
Q ss_pred CCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccccCC
Q psy13409 98 SAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGY 177 (330)
Q Consensus 98 g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~~ 177 (330)
..+|++||+||...... ...+....+.+|+.++..+++.+. +.+.+++|++||.. .++... ..+++...+.
T Consensus 69 ~~~d~vv~~ag~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~ss~~-~~g~~~--~~~~~e~~~~ 139 (328)
T TIGR01179 69 HKIDAVIHFAGLIAVGE--SVQDPLKYYRNNVVNTLNLLEAMQ----QTGVKKFIFSSSAA-VYGEPS--SIPISEDSPL 139 (328)
T ss_pred CCCcEEEECccccCcch--hhcCchhhhhhhHHHHHHHHHHHH----hcCCCEEEEecchh-hcCCCC--CCCccccCCC
Confidence 36899999999764321 233455678899999888877643 33457899988864 344221 1233444445
Q ss_pred CcchhhHHhHHHHHHHHHHHHHH
Q psy13409 178 SATGAYGRSKLANILFTTELAKR 200 (330)
Q Consensus 178 ~~~~~Y~asK~a~~~~~~~la~~ 200 (330)
.+...|+.+|++.+.+++.++.+
T Consensus 140 ~~~~~y~~sK~~~e~~~~~~~~~ 162 (328)
T TIGR01179 140 GPINPYGRSKLMSERILRDLSKA 162 (328)
T ss_pred CCCCchHHHHHHHHHHHHHHHHh
Confidence 56678999999999999998765
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.3e-13 Score=131.41 Aligned_cols=168 Identities=13% Similarity=0.089 Sum_probs=109.9
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHC-CCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKR-GARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~-G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
+++.++||||||+|.||++++++|+++ |++|++++|+.+.......... .....++.++.+|++|.+++.++++
T Consensus 11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~-----~~~~~~~~~~~~Dl~d~~~l~~~~~ 85 (386)
T PLN02427 11 PIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDT-----VPWSGRIQFHRINIKHDSRLEGLIK 85 (386)
T ss_pred cccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhcccc-----ccCCCCeEEEEcCCCChHHHHHHhh
Confidence 456678999999999999999999998 5899999987654332211100 0012468999999999988777664
Q ss_pred HHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc--c
Q psy13409 92 EILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF--E 169 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~--~ 169 (330)
.+|++||+|+...+... ..+..+.+..|+.+..++++++.. .+ .++|++||.. .+|.....+ +
T Consensus 86 -------~~d~ViHlAa~~~~~~~--~~~~~~~~~~n~~gt~~ll~aa~~----~~-~r~v~~SS~~-vYg~~~~~~~~e 150 (386)
T PLN02427 86 -------MADLTINLAAICTPADY--NTRPLDTIYSNFIDALPVVKYCSE----NN-KRLIHFSTCE-VYGKTIGSFLPK 150 (386)
T ss_pred -------cCCEEEEcccccChhhh--hhChHHHHHHHHHHHHHHHHHHHh----cC-CEEEEEeeee-eeCCCcCCCCCc
Confidence 26999999997543211 112234466899998888776532 23 6899999965 444311111 0
Q ss_pred --cccc---------c-cC------CCcchhhHHhHHHHHHHHHHHHHH
Q psy13409 170 --DINL---------E-KG------YSATGAYGRSKLANILFTTELAKR 200 (330)
Q Consensus 170 --~~~~---------~-~~------~~~~~~Y~asK~a~~~~~~~la~~ 200 (330)
++.. . .+ ......|+.+|.+.+.+++.++..
T Consensus 151 ~~p~~~~~~~~~~~e~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~ 199 (386)
T PLN02427 151 DHPLRQDPAFYVLKEDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAE 199 (386)
T ss_pred ccccccccccccccccccccccCCCCccccchHHHHHHHHHHHHHHHhh
Confidence 1100 0 00 012346999999999988876543
|
|
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.8e-14 Score=131.47 Aligned_cols=156 Identities=19% Similarity=0.192 Sum_probs=111.4
Q ss_pred EEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhcC
Q psy13409 19 AIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNE 97 (330)
Q Consensus 19 aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~~ 97 (330)
||||||+|.||.+++++|++.+. .|++++|++..+-.+.+++.+..+.......+.++.+|++|.+.+++++++.
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~---- 76 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEY---- 76 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT------
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhc----
Confidence 79999999999999999999985 7999999999999888888655422111123456789999999888887643
Q ss_pred CCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccccCC
Q psy13409 98 SAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGY 177 (330)
Q Consensus 98 g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~~ 177 (330)
++|+++|.|+.-..+. -++...+.+++|+.|+.++++++.. .+-.++|++|+--+.
T Consensus 77 -~pdiVfHaAA~KhVpl--~E~~p~eav~tNv~GT~nv~~aa~~----~~v~~~v~ISTDKAv----------------- 132 (293)
T PF02719_consen 77 -KPDIVFHAAALKHVPL--MEDNPFEAVKTNVLGTQNVAEAAIE----HGVERFVFISTDKAV----------------- 132 (293)
T ss_dssp -T-SEEEE------HHH--HCCCHHHHHHHHCHHHHHHHHHHHH----TT-SEEEEEEECGCS-----------------
T ss_pred -CCCEEEEChhcCCCCh--HHhCHHHHHHHHHHHHHHHHHHHHH----cCCCEEEEccccccC-----------------
Confidence 7999999999765431 1235677899999998888887765 455799999996543
Q ss_pred CcchhhHHhHHHHHHHHHHHHHHhc
Q psy13409 178 SATGAYGRSKLANILFTTELAKRLQ 202 (330)
Q Consensus 178 ~~~~~Y~asK~a~~~~~~~la~~~~ 202 (330)
.+.+.|++||...+.++.+.+...+
T Consensus 133 ~PtnvmGatKrlaE~l~~~~~~~~~ 157 (293)
T PF02719_consen 133 NPTNVMGATKRLAEKLVQAANQYSG 157 (293)
T ss_dssp S--SHHHHHHHHHHHHHHHHCCTSS
T ss_pred CCCcHHHHHHHHHHHHHHHHhhhCC
Confidence 4568899999999999998887664
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.7e-13 Score=124.78 Aligned_cols=215 Identities=18% Similarity=0.055 Sum_probs=142.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhcC
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNE 97 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~~ 97 (330)
.+|||||+|.||.+++++|+++|++|+.++|......... ..+.++.+|+++.+.+...++..
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-------------~~~~~~~~d~~~~~~~~~~~~~~---- 64 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL-------------SGVEFVVLDLTDRDLVDELAKGV---- 64 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccccc-------------cccceeeecccchHHHHHHHhcC----
Confidence 3999999999999999999999999999999875432211 35678899999985555444322
Q ss_pred CCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccc-cC
Q psy13409 98 SAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLE-KG 176 (330)
Q Consensus 98 g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~-~~ 176 (330)
. |.+||+|+.......... .....+.+|+.+..++++++.. .+..++|+.||.+...+. ... .+.++. .+
T Consensus 65 ~--d~vih~aa~~~~~~~~~~-~~~~~~~~nv~gt~~ll~aa~~----~~~~~~v~~ss~~~~~~~-~~~-~~~~E~~~~ 135 (314)
T COG0451 65 P--DAVIHLAAQSSVPDSNAS-DPAEFLDVNVDGTLNLLEAARA----AGVKRFVFASSVSVVYGD-PPP-LPIDEDLGP 135 (314)
T ss_pred C--CEEEEccccCchhhhhhh-CHHHHHHHHHHHHHHHHHHHHH----cCCCeEEEeCCCceECCC-CCC-CCcccccCC
Confidence 1 999999998764422222 4556888999997777776644 456788985554433332 111 123332 33
Q ss_pred CCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCCCCC
Q psy13409 177 YSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGANI 256 (330)
Q Consensus 177 ~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (330)
..+...|+.+|.+.+.+++..+. .
T Consensus 136 ~~p~~~Yg~sK~~~E~~~~~~~~--~------------------------------------------------------ 159 (314)
T COG0451 136 PRPLNPYGVSKLAAEQLLRAYAR--L------------------------------------------------------ 159 (314)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHH--H------------------------------------------------------
Confidence 34444899999999999999887 3
Q ss_pred CceeEEEeeCcccccCcccccCCCchh---hHHHHHHhh---h-------hhccChHHHHHHHHHhhcccc
Q psy13409 257 TNVNTYAVHPGVVDTELSRHFDSIIPG---TAWLYQRVG---G-------LFIKSPLQGAQTTLYCALDKK 314 (330)
Q Consensus 257 ~~i~v~~v~pG~v~t~~~~~~~~~~~~---~~~~~~~~~---~-------~~~~~~~e~a~~~~~l~~~~~ 314 (330)
.++.+..+.|+.|-.+........... ..+.....+ . ..+...+|+|++++.++..+.
T Consensus 160 ~~~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~ 230 (314)
T COG0451 160 YGLPVVILRPFNVYGPGDKPDLSSGVVSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADALLLALENPD 230 (314)
T ss_pred hCCCeEEEeeeeeeCCCCCCCCCcCcHHHHHHHHHhCCCcceEeCCCceeEeeEeHHHHHHHHHHHHhCCC
Confidence 578888999988766654432111011 111111111 0 014568999999999987654
|
|
| >KOG1371|consensus | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-13 Score=128.14 Aligned_cols=170 Identities=21% Similarity=0.211 Sum_probs=131.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
+++||||||+|.||.+++.+|+++|+.|++++.-........+.+++... .+..+.+++.|+.|.+.++++++..
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~---~~~~v~f~~~Dl~D~~~L~kvF~~~-- 76 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLG---EGKSVFFVEGDLNDAEALEKLFSEV-- 76 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcC---CCCceEEEEeccCCHHHHHHHHhhc--
Confidence 68999999999999999999999999999999866555455555544432 2589999999999999999998876
Q ss_pred cCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccccccc
Q psy13409 96 NESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEK 175 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~ 175 (330)
.+|.++|-|+.....+ +.+......+.|+.|.++++.. |++.+...+|+.|| ++.+|.+.. .|++...
T Consensus 77 ---~fd~V~Hfa~~~~vge--S~~~p~~Y~~nNi~gtlnlLe~----~~~~~~~~~V~sss-atvYG~p~~--ip~te~~ 144 (343)
T KOG1371|consen 77 ---KFDAVMHFAALAAVGE--SMENPLSYYHNNIAGTLNLLEV----MKAHNVKALVFSSS-ATVYGLPTK--VPITEED 144 (343)
T ss_pred ---CCceEEeehhhhccch--hhhCchhheehhhhhHHHHHHH----HHHcCCceEEEecc-eeeecCcce--eeccCcC
Confidence 5899999998764332 3344477788999997777655 45555567777666 557775443 6677666
Q ss_pred CCC-cchhhHHhHHHHHHHHHHHHHHhc
Q psy13409 176 GYS-ATGAYGRSKLANILFTTELAKRLQ 202 (330)
Q Consensus 176 ~~~-~~~~Y~asK~a~~~~~~~la~~~~ 202 (330)
+.. +...|+.+|.+++-.++.+.+.+.
T Consensus 145 ~t~~p~~pyg~tK~~iE~i~~d~~~~~~ 172 (343)
T KOG1371|consen 145 PTDQPTNPYGKTKKAIEEIIHDYNKAYG 172 (343)
T ss_pred CCCCCCCcchhhhHHHHHHHHhhhcccc
Confidence 666 788999999999999998877654
|
|
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.5e-13 Score=125.04 Aligned_cols=154 Identities=17% Similarity=0.176 Sum_probs=102.2
Q ss_pred EEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh--c
Q psy13409 19 AIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD--N 96 (330)
Q Consensus 19 aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~--~ 96 (330)
+|||||+|.||++++++|+++|+.++++.|+........ ....+|+.|..+.+.+++.+.+ .
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~~~~~~~~----------------~~~~~~~~d~~~~~~~~~~~~~~~~ 65 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFV----------------NLVDLDIADYMDKEDFLAQIMAGDD 65 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEEecCCCcchHHH----------------hhhhhhhhhhhhHHHHHHHHhcccc
Confidence 799999999999999999999997666655543211100 1234567666666666665543 3
Q ss_pred CCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccccC
Q psy13409 97 ESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKG 176 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~ 176 (330)
++.+|++||+||..... .. +.+..++.|+.++.++++.+.. .+ .++|++||.. .++.... .+.+...+
T Consensus 66 ~~~~d~Vih~A~~~~~~-~~---~~~~~~~~n~~~t~~ll~~~~~----~~-~~~i~~SS~~-vyg~~~~--~~~~E~~~ 133 (308)
T PRK11150 66 FGDIEAIFHEGACSSTT-EW---DGKYMMDNNYQYSKELLHYCLE----RE-IPFLYASSAA-TYGGRTD--DFIEEREY 133 (308)
T ss_pred cCCccEEEECceecCCc-CC---ChHHHHHHHHHHHHHHHHHHHH----cC-CcEEEEcchH-HhCcCCC--CCCccCCC
Confidence 45799999999865322 11 2244688999998888777643 33 4799998875 4553221 12333333
Q ss_pred CCcchhhHHhHHHHHHHHHHHHHH
Q psy13409 177 YSATGAYGRSKLANILFTTELAKR 200 (330)
Q Consensus 177 ~~~~~~Y~asK~a~~~~~~~la~~ 200 (330)
..+...|+.+|.+.+.+++.++.+
T Consensus 134 ~~p~~~Y~~sK~~~E~~~~~~~~~ 157 (308)
T PRK11150 134 EKPLNVYGYSKFLFDEYVRQILPE 157 (308)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 445678999999999888877654
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.4e-13 Score=129.19 Aligned_cols=147 Identities=15% Similarity=0.119 Sum_probs=103.9
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHH--HHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAET--AADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~--~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
...++++++||||+|+||++++++|+++|++|+++.|+.+.... ..+.+.. ...++.++.+|++|.+++.++
T Consensus 56 ~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~ 129 (390)
T PLN02657 56 KEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKK------ELPGAEVVFGDVTDADSLRKV 129 (390)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhh------hcCCceEEEeeCCCHHHHHHH
Confidence 34678899999999999999999999999999999998765321 1111111 124678899999999999888
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 90 AQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
++.. ...+|++|||++..... ....+++|+.+..++++++ .+.+.+++|++||....
T Consensus 130 ~~~~---~~~~D~Vi~~aa~~~~~-------~~~~~~vn~~~~~~ll~aa----~~~gv~r~V~iSS~~v~--------- 186 (390)
T PLN02657 130 LFSE---GDPVDVVVSCLASRTGG-------VKDSWKIDYQATKNSLDAG----REVGAKHFVLLSAICVQ--------- 186 (390)
T ss_pred HHHh---CCCCcEEEECCccCCCC-------CccchhhHHHHHHHHHHHH----HHcCCCEEEEEeecccc---------
Confidence 7753 12689999999853211 1123457777866666654 34556799999997532
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHH
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTT 195 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~ 195 (330)
.+...|..+|...+...+
T Consensus 187 --------~p~~~~~~sK~~~E~~l~ 204 (390)
T PLN02657 187 --------KPLLEFQRAKLKFEAELQ 204 (390)
T ss_pred --------CcchHHHHHHHHHHHHHH
Confidence 123457788888776554
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.7e-12 Score=123.09 Aligned_cols=157 Identities=10% Similarity=0.015 Sum_probs=107.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHC-CCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCC-CHHHHHHHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKR-GARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLS-SLKSVRKCAQEIL 94 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~-G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls-~~~si~~l~~~i~ 94 (330)
|++|||||+|.||++++++|++. |++|++++|+....... . ....+.++.+|++ +.+.+..+++
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~----~-------~~~~~~~~~~Dl~~~~~~~~~~~~--- 67 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDL----V-------NHPRMHFFEGDITINKEWIEYHVK--- 67 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHh----c-------cCCCeEEEeCCCCCCHHHHHHHHc---
Confidence 47999999999999999999986 69999999876432211 1 1235888999998 5555544433
Q ss_pred hcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccc
Q psy13409 95 DNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLE 174 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~ 174 (330)
.+|++||+|+...+.. ..++.+..+++|+.+..+++.++. +.+ .++|++||.. .++..... +++.+
T Consensus 68 ----~~d~ViH~aa~~~~~~--~~~~p~~~~~~n~~~~~~ll~aa~----~~~-~~~v~~SS~~-vyg~~~~~--~~~ee 133 (347)
T PRK11908 68 ----KCDVILPLVAIATPAT--YVKQPLRVFELDFEANLPIVRSAV----KYG-KHLVFPSTSE-VYGMCPDE--EFDPE 133 (347)
T ss_pred ----CCCEEEECcccCChHH--hhcCcHHHHHHHHHHHHHHHHHHH----hcC-CeEEEEecce-eeccCCCc--CcCcc
Confidence 4799999999764321 123445677899999877776653 333 6999999974 45432111 12111
Q ss_pred c------C-CCcchhhHHhHHHHHHHHHHHHHHh
Q psy13409 175 K------G-YSATGAYGRSKLANILFTTELAKRL 201 (330)
Q Consensus 175 ~------~-~~~~~~Y~asK~a~~~~~~~la~~~ 201 (330)
. + ..+...|+.+|.+.+.+++.++.+.
T Consensus 134 ~~~~~~~~~~~p~~~Y~~sK~~~e~~~~~~~~~~ 167 (347)
T PRK11908 134 ASPLVYGPINKPRWIYACSKQLMDRVIWAYGMEE 167 (347)
T ss_pred ccccccCcCCCccchHHHHHHHHHHHHHHHHHHc
Confidence 1 1 1234579999999999988887653
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-12 Score=135.18 Aligned_cols=169 Identities=14% Similarity=0.111 Sum_probs=114.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHC--CCEEEEEecCh--hHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKR--GARVIMACRSL--EKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~--G~~Vil~~R~~--~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
.++|+||||||+|.||++++++|+++ |++|++++|.. +.+.... .. ....++.++.+|++|.+.+..+
T Consensus 4 ~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~----~~----~~~~~v~~~~~Dl~d~~~~~~~ 75 (668)
T PLN02260 4 YEPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLN----PS----KSSPNFKFVKGDIASADLVNYL 75 (668)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhh----hc----ccCCCeEEEECCCCChHHHHHH
Confidence 46789999999999999999999998 67899888753 2221111 10 0234688999999998876665
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCCcc
Q psy13409 90 AQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~~~ 168 (330)
+.. ..+|++||+|+...... ...+....+++|+.++.++++++. +.+ .+++|++||.. .++......
T Consensus 76 ~~~-----~~~D~ViHlAa~~~~~~--~~~~~~~~~~~Nv~gt~~ll~a~~----~~~~vkr~I~~SS~~-vyg~~~~~~ 143 (668)
T PLN02260 76 LIT-----EGIDTIMHFAAQTHVDN--SFGNSFEFTKNNIYGTHVLLEACK----VTGQIRRFIHVSTDE-VYGETDEDA 143 (668)
T ss_pred Hhh-----cCCCEEEECCCccCchh--hhhCHHHHHHHHHHHHHHHHHHHH----hcCCCcEEEEEcchH-HhCCCcccc
Confidence 432 36899999999764321 122335667899999777776653 333 46999999964 444322111
Q ss_pred -cccccccCCCcchhhHHhHHHHHHHHHHHHHHhc
Q psy13409 169 -EDINLEKGYSATGAYGRSKLANILFTTELAKRLQ 202 (330)
Q Consensus 169 -~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~ 202 (330)
.+.+...+..+...|+.+|.+.+.+++.++.+++
T Consensus 144 ~~~~~E~~~~~p~~~Y~~sK~~aE~~v~~~~~~~~ 178 (668)
T PLN02260 144 DVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYG 178 (668)
T ss_pred ccCccccCCCCCCCCcHHHHHHHHHHHHHHHHHcC
Confidence 1112222334566899999999999998876543
|
|
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.9e-12 Score=131.08 Aligned_cols=159 Identities=11% Similarity=-0.000 Sum_probs=110.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHC-CCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHH-HHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKR-GARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKS-VRKCAQE 92 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~-G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~s-i~~l~~~ 92 (330)
++++||||||+|.||.+++++|+++ |++|++++|........ . ...++.++.+|+++.++ ++++++
T Consensus 314 ~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~~----~-------~~~~~~~~~gDl~d~~~~l~~~l~- 381 (660)
T PRK08125 314 RRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISRF----L-------GHPRFHFVEGDISIHSEWIEYHIK- 381 (660)
T ss_pred cCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhhhh----c-------CCCceEEEeccccCcHHHHHHHhc-
Confidence 5789999999999999999999986 79999999976432211 0 23468889999998654 333332
Q ss_pred HHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccc
Q psy13409 93 ILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDIN 172 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~ 172 (330)
.+|++||+|+...+... ..+.+..+++|+.+..++++++.. .+ .++|++||.. .+|.... .+++
T Consensus 382 ------~~D~ViHlAa~~~~~~~--~~~~~~~~~~Nv~~t~~ll~a~~~----~~-~~~V~~SS~~-vyg~~~~--~~~~ 445 (660)
T PRK08125 382 ------KCDVVLPLVAIATPIEY--TRNPLRVFELDFEENLKIIRYCVK----YN-KRIIFPSTSE-VYGMCTD--KYFD 445 (660)
T ss_pred ------CCCEEEECccccCchhh--ccCHHHHHHhhHHHHHHHHHHHHh----cC-CeEEEEcchh-hcCCCCC--CCcC
Confidence 47999999997654311 223455788999998888777653 33 6899999964 4553111 1122
Q ss_pred ccc------CC-CcchhhHHhHHHHHHHHHHHHHHh
Q psy13409 173 LEK------GY-SATGAYGRSKLANILFTTELAKRL 201 (330)
Q Consensus 173 ~~~------~~-~~~~~Y~asK~a~~~~~~~la~~~ 201 (330)
+.. +. .+...|+.||.+.+.+++.+++++
T Consensus 446 E~~~~~~~~p~~~p~s~Yg~sK~~~E~~~~~~~~~~ 481 (660)
T PRK08125 446 EDTSNLIVGPINKQRWIYSVSKQLLDRVIWAYGEKE 481 (660)
T ss_pred ccccccccCCCCCCccchHHHHHHHHHHHHHHHHhc
Confidence 221 11 233579999999999999887653
|
|
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.7e-12 Score=118.37 Aligned_cols=152 Identities=18% Similarity=0.142 Sum_probs=103.3
Q ss_pred EEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhcC
Q psy13409 19 AIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNE 97 (330)
Q Consensus 19 aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~~ 97 (330)
+|||||+|.||.++++.|.++|+ .|++++|..... ... .+ . ...+..|+++.+.++.+.+. .+
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~~-~~~-~~---------~--~~~~~~d~~~~~~~~~~~~~---~~ 64 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGH-KFL-NL---------A--DLVIADYIDKEDFLDRLEKG---AF 64 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCch-hhh-hh---------h--heeeeccCcchhHHHHHHhh---cc
Confidence 68999999999999999999998 688887764321 111 11 1 12456788887766655442 34
Q ss_pred CCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccccC-
Q psy13409 98 SAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKG- 176 (330)
Q Consensus 98 g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~- 176 (330)
..+|++||+|+.... ...+....+++|+.+..++++.+.. .+ .++|++||.. .++... .+.+.+.+
T Consensus 65 ~~~D~vvh~A~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~-vy~~~~---~~~~e~~~~ 131 (314)
T TIGR02197 65 GKIEAIFHQGACSDT----TETDGEYMMENNYQYSKRLLDWCAE----KG-IPFIYASSAA-TYGDGE---AGFREGREL 131 (314)
T ss_pred CCCCEEEECccccCc----cccchHHHHHHHHHHHHHHHHHHHH----hC-CcEEEEccHH-hcCCCC---CCcccccCc
Confidence 579999999996432 2345567889999998888777643 33 4899999964 555321 12222222
Q ss_pred CCcchhhHHhHHHHHHHHHHHHH
Q psy13409 177 YSATGAYGRSKLANILFTTELAK 199 (330)
Q Consensus 177 ~~~~~~Y~asK~a~~~~~~~la~ 199 (330)
..+...|+.+|.+.+.+++....
T Consensus 132 ~~p~~~Y~~sK~~~e~~~~~~~~ 154 (314)
T TIGR02197 132 ERPLNVYGYSKFLFDQYVRRRVL 154 (314)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhH
Confidence 23566899999999998886543
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-11 Score=119.99 Aligned_cols=163 Identities=15% Similarity=0.102 Sum_probs=110.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
++|++|||||+|.||+++++.|.++|++|++++|..... +.. ....+.++.+|+++.+++..++.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~------~~~------~~~~~~~~~~Dl~d~~~~~~~~~--- 84 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEH------MSE------DMFCHEFHLVDLRVMENCLKVTK--- 84 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccc------ccc------ccccceEEECCCCCHHHHHHHHh---
Confidence 789999999999999999999999999999999864321 000 01124678899999877666543
Q ss_pred hcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc--ccc
Q psy13409 95 DNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE--DIN 172 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~--~~~ 172 (330)
.+|++||+|+....... ...+....+..|+.++.++++++. +.+.+++|++||.. .++....... ++.
T Consensus 85 ----~~D~Vih~Aa~~~~~~~-~~~~~~~~~~~N~~~t~nll~aa~----~~~vk~~V~~SS~~-vYg~~~~~~~~~~~~ 154 (370)
T PLN02695 85 ----GVDHVFNLAADMGGMGF-IQSNHSVIMYNNTMISFNMLEAAR----INGVKRFFYASSAC-IYPEFKQLETNVSLK 154 (370)
T ss_pred ----CCCEEEEcccccCCccc-cccCchhhHHHHHHHHHHHHHHHH----HhCCCEEEEeCchh-hcCCccccCcCCCcC
Confidence 36999999986532111 112233456789999887777653 34456999999964 4443211100 122
Q ss_pred ccc--CCCcchhhHHhHHHHHHHHHHHHHHhc
Q psy13409 173 LEK--GYSATGAYGRSKLANILFTTELAKRLQ 202 (330)
Q Consensus 173 ~~~--~~~~~~~Y~asK~a~~~~~~~la~~~~ 202 (330)
... +..+...|+.+|.+.+.++..++..++
T Consensus 155 E~~~~p~~p~s~Yg~sK~~~E~~~~~~~~~~g 186 (370)
T PLN02695 155 ESDAWPAEPQDAYGLEKLATEELCKHYTKDFG 186 (370)
T ss_pred cccCCCCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 211 345567899999999999988876543
|
|
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.3e-12 Score=126.11 Aligned_cols=170 Identities=16% Similarity=0.122 Sum_probs=114.5
Q ss_pred CcccCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHH
Q psy13409 6 GKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKS 85 (330)
Q Consensus 6 ~~~~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~s 85 (330)
++.+..++-++++||||||+|.||++++++|+++|++|++++|......+. +.... ...++.++..|+.+..
T Consensus 109 ~~~~~~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~~~---~~~~~----~~~~~~~i~~D~~~~~- 180 (442)
T PLN02206 109 GKIPLGLKRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKEN---VMHHF----SNPNFELIRHDVVEPI- 180 (442)
T ss_pred CcCccccccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCccchhh---hhhhc----cCCceEEEECCccChh-
Confidence 444555667889999999999999999999999999999998754321111 11111 2345778889987642
Q ss_pred HHHHHHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCC
Q psy13409 86 VRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGS 165 (330)
Q Consensus 86 i~~l~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~ 165 (330)
+ ..+|++||+|+...+... ..+....+++|+.++.++++++.. .+ .++|++||.. .++...
T Consensus 181 ----l-------~~~D~ViHlAa~~~~~~~--~~~p~~~~~~Nv~gt~nLleaa~~----~g-~r~V~~SS~~-VYg~~~ 241 (442)
T PLN02206 181 ----L-------LEVDQIYHLACPASPVHY--KFNPVKTIKTNVVGTLNMLGLAKR----VG-ARFLLTSTSE-VYGDPL 241 (442)
T ss_pred ----h-------cCCCEEEEeeeecchhhh--hcCHHHHHHHHHHHHHHHHHHHHH----hC-CEEEEECChH-HhCCCC
Confidence 1 147999999987643211 123467789999998888776643 33 4899999965 444322
Q ss_pred Ccccccc---cccCCCcchhhHHhHHHHHHHHHHHHHHhc
Q psy13409 166 MHFEDIN---LEKGYSATGAYGRSKLANILFTTELAKRLQ 202 (330)
Q Consensus 166 ~~~~~~~---~~~~~~~~~~Y~asK~a~~~~~~~la~~~~ 202 (330)
......+ ..++......|+.+|.+.+.++..+++.++
T Consensus 242 ~~p~~E~~~~~~~P~~~~s~Y~~SK~~aE~~~~~y~~~~g 281 (442)
T PLN02206 242 QHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAN 281 (442)
T ss_pred CCCCCccccccCCCCCccchHHHHHHHHHHHHHHHHHHhC
Confidence 1111111 112334467899999999999988877655
|
|
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.2e-11 Score=113.15 Aligned_cols=138 Identities=22% Similarity=0.268 Sum_probs=99.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhcC
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNE 97 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~~ 97 (330)
++|||||+|.||.+++++|+++|++|+++.|+ .+|+.+.+++.++++..
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~---------------------------~~d~~~~~~~~~~~~~~---- 49 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSS---------------------------QLDLTDPEALERLLRAI---- 49 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc---------------------------ccCCCCHHHHHHHHHhC----
Confidence 37999999999999999999999999998874 36889988888877652
Q ss_pred CCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccccCC
Q psy13409 98 SAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGY 177 (330)
Q Consensus 98 g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~~ 177 (330)
.+|++||+|+...... ........+++|+.+..++++.+.. .+ .++|++||.. .++.. ...++++..+.
T Consensus 50 -~~d~vi~~a~~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~v~~Ss~~-vy~~~--~~~~~~E~~~~ 118 (287)
T TIGR01214 50 -RPDAVVNTAAYTDVDG--AESDPEKAFAVNALAPQNLARAAAR----HG-ARLVHISTDY-VFDGE--GKRPYREDDAT 118 (287)
T ss_pred -CCCEEEECCccccccc--cccCHHHHHHHHHHHHHHHHHHHHH----cC-CeEEEEeeee-eecCC--CCCCCCCCCCC
Confidence 5899999999753221 1234566788999998888777533 33 5899999964 33321 11223333334
Q ss_pred CcchhhHHhHHHHHHHHHHH
Q psy13409 178 SATGAYGRSKLANILFTTEL 197 (330)
Q Consensus 178 ~~~~~Y~asK~a~~~~~~~l 197 (330)
.+...|+.+|.+.+.+++.+
T Consensus 119 ~~~~~Y~~~K~~~E~~~~~~ 138 (287)
T TIGR01214 119 NPLNVYGQSKLAGEQAIRAA 138 (287)
T ss_pred CCcchhhHHHHHHHHHHHHh
Confidence 45678999999988777643
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-11 Score=128.31 Aligned_cols=159 Identities=21% Similarity=0.160 Sum_probs=100.4
Q ss_pred CEEEEEcCCCchHHHHHHHHH--HCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHH--HHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELA--KRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSV--RKCAQE 92 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~--~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si--~~l~~~ 92 (330)
+++|||||+|.||.+++++|+ ..|++|++++|+... .+..+ +.... ...++.++.+|+++++.. ....+.
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~-~~~~~-~~~~~----~~~~v~~~~~Dl~~~~~~~~~~~~~~ 74 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSL-SRLEA-LAAYW----GADRVVPLVGDLTEPGLGLSEADIAE 74 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcchH-HHHHH-HHHhc----CCCcEEEEecccCCccCCcCHHHHHH
Confidence 379999999999999999999 579999999996532 22222 11111 125788999999985310 111222
Q ss_pred HHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccc
Q psy13409 93 ILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDIN 172 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~ 172 (330)
+ ..+|++||+||..... .......++|+.+..++++.+ .+.+..++|++||........+...+. +
T Consensus 75 l----~~~D~Vih~Aa~~~~~-----~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~v~~SS~~v~g~~~~~~~e~-~ 140 (657)
T PRK07201 75 L----GDIDHVVHLAAIYDLT-----ADEEAQRAANVDGTRNVVELA----ERLQAATFHHVSSIAVAGDYEGVFRED-D 140 (657)
T ss_pred h----cCCCEEEECceeecCC-----CCHHHHHHHHhHHHHHHHHHH----HhcCCCeEEEEeccccccCccCccccc-c
Confidence 2 3689999999975322 223456788999976666654 344467999999975432111111111 1
Q ss_pred cccCCCcchhhHHhHHHHHHHHH
Q psy13409 173 LEKGYSATGAYGRSKLANILFTT 195 (330)
Q Consensus 173 ~~~~~~~~~~Y~asK~a~~~~~~ 195 (330)
...+......|+.+|...+.+++
T Consensus 141 ~~~~~~~~~~Y~~sK~~~E~~~~ 163 (657)
T PRK07201 141 FDEGQGLPTPYHRTKFEAEKLVR 163 (657)
T ss_pred chhhcCCCCchHHHHHHHHHHHH
Confidence 11112234579999999888775
|
|
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.1e-12 Score=117.44 Aligned_cols=163 Identities=19% Similarity=0.164 Sum_probs=93.4
Q ss_pred EEcCCCchHHHHHHHHHHCCC--EEEEEecChhH---HHHHHHHHHHhhccc----CCCCeEEEEEccCCCHH------H
Q psy13409 21 VTGSNTGIGKCTANELAKRGA--RVIMACRSLEK---AETAADDIRTSLKDV----KDAGEVVIRQLDLSSLK------S 85 (330)
Q Consensus 21 ITGas~gIG~aia~~L~~~G~--~Vil~~R~~~~---l~~~~~~l~~~~~~~----~~~~~v~~i~~Dls~~~------s 85 (330)
||||||.||.++.++|++++. +|++..|..+. .+++.+.+.+..... ....++.++.+|++++. +
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~ 80 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED 80 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence 799999999999999999986 89999997643 222222221110000 02679999999999853 3
Q ss_pred HHHHHHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCC
Q psy13409 86 VRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGS 165 (330)
Q Consensus 86 i~~l~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~ 165 (330)
.+.+.+ .+|++||||+..... ..+.+..++|+.|+..+++.+. ..+..+++++|| +...+...
T Consensus 81 ~~~L~~-------~v~~IiH~Aa~v~~~-----~~~~~~~~~NV~gt~~ll~la~----~~~~~~~~~iST-a~v~~~~~ 143 (249)
T PF07993_consen 81 YQELAE-------EVDVIIHCAASVNFN-----APYSELRAVNVDGTRNLLRLAA----QGKRKRFHYIST-AYVAGSRP 143 (249)
T ss_dssp HHHHHH-------H--EEEE--SS-SBS------S--EEHHHHHHHHHHHHHHHT----SSS---EEEEEE-GGGTTS-T
T ss_pred hhcccc-------ccceeeecchhhhhc-----ccchhhhhhHHHHHHHHHHHHH----hccCcceEEecc-ccccCCCC
Confidence 444444 369999999977533 2445577899999666666553 333459999999 32322211
Q ss_pred Cc-------ccccccccCCCcchhhHHhHHHHHHHHHHHHHH
Q psy13409 166 MH-------FEDINLEKGYSATGAYGRSKLANILFTTELAKR 200 (330)
Q Consensus 166 ~~-------~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~ 200 (330)
.. .++.+..........|..||..-+.+++..+.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~gY~~SK~~aE~~l~~a~~~ 185 (249)
T PF07993_consen 144 GTIEEKVYPEEEDDLDPPQGFPNGYEQSKWVAERLLREAAQR 185 (249)
T ss_dssp TT--SSS-HHH--EEE--TTSEE-HHHHHHHHHHHHHHHHHH
T ss_pred CcccccccccccccchhhccCCccHHHHHHHHHHHHHHHHhc
Confidence 11 122333334455569999999999999988875
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-11 Score=123.14 Aligned_cols=169 Identities=14% Similarity=0.074 Sum_probs=112.4
Q ss_pred cccCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHH
Q psy13409 7 KCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSV 86 (330)
Q Consensus 7 ~~~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si 86 (330)
+.....+-+.++|+||||+|.||.+++++|+++|++|++++|...........+. ...++.++..|+.+..
T Consensus 111 ~~~~~~~~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~~~~~~~~~-------~~~~~~~~~~Di~~~~-- 181 (436)
T PLN02166 111 RVPVGIGRKRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENLVHLF-------GNPRFELIRHDVVEPI-- 181 (436)
T ss_pred CCCcccccCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCccHhHhhhhc-------cCCceEEEECcccccc--
Confidence 3333445567899999999999999999999999999999986432111111111 1235778888987642
Q ss_pred HHHHHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCC
Q psy13409 87 RKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSM 166 (330)
Q Consensus 87 ~~l~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~ 166 (330)
...+|+|||+|+...+... ..+....+++|+.+..+++.++.. .+ .++|++||.. .++....
T Consensus 182 ----------~~~~D~ViHlAa~~~~~~~--~~~p~~~~~~Nv~gT~nLleaa~~----~g-~r~V~~SS~~-VYg~~~~ 243 (436)
T PLN02166 182 ----------LLEVDQIYHLACPASPVHY--KYNPVKTIKTNVMGTLNMLGLAKR----VG-ARFLLTSTSE-VYGDPLE 243 (436)
T ss_pred ----------ccCCCEEEECceeccchhh--ccCHHHHHHHHHHHHHHHHHHHHH----hC-CEEEEECcHH-HhCCCCC
Confidence 1247999999987643321 123467788999998887766543 33 4899998864 4553221
Q ss_pred cccccc---cccCCCcchhhHHhHHHHHHHHHHHHHHhc
Q psy13409 167 HFEDIN---LEKGYSATGAYGRSKLANILFTTELAKRLQ 202 (330)
Q Consensus 167 ~~~~~~---~~~~~~~~~~Y~asK~a~~~~~~~la~~~~ 202 (330)
.....+ ..++..+...|+.+|.+.+.+++.+++..+
T Consensus 244 ~p~~E~~~~~~~p~~p~s~Yg~SK~~aE~~~~~y~~~~~ 282 (436)
T PLN02166 244 HPQKETYWGNVNPIGERSCYDEGKRTAETLAMDYHRGAG 282 (436)
T ss_pred CCCCccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhC
Confidence 111111 112344566899999999999998887655
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.9e-12 Score=117.97 Aligned_cols=132 Identities=14% Similarity=0.052 Sum_probs=92.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
++++||||+|.||++++++|+++|++|+++.|+.++... +. ...+.++.+|++|++++...++
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~----l~--------~~~v~~v~~Dl~d~~~l~~al~----- 63 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASF----LK--------EWGAELVYGDLSLPETLPPSFK----- 63 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhh----Hh--------hcCCEEEECCCCCHHHHHHHHC-----
Confidence 379999999999999999999999999999998754321 11 1247889999999988776654
Q ss_pred CCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccccC
Q psy13409 97 ESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKG 176 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~ 176 (330)
.+|++||+++... .+.....++|+.+..++++++ .+.+-.++|++||.....
T Consensus 64 --g~d~Vi~~~~~~~-------~~~~~~~~~~~~~~~~l~~aa----~~~gvkr~I~~Ss~~~~~--------------- 115 (317)
T CHL00194 64 --GVTAIIDASTSRP-------SDLYNAKQIDWDGKLALIEAA----KAAKIKRFIFFSILNAEQ--------------- 115 (317)
T ss_pred --CCCEEEECCCCCC-------CCccchhhhhHHHHHHHHHHH----HHcCCCEEEEeccccccc---------------
Confidence 3699999876431 122335567888866666554 344557999999854211
Q ss_pred CCcchhhHHhHHHHHHHH
Q psy13409 177 YSATGAYGRSKLANILFT 194 (330)
Q Consensus 177 ~~~~~~Y~asK~a~~~~~ 194 (330)
.+...|..+|...+.+.
T Consensus 116 -~~~~~~~~~K~~~e~~l 132 (317)
T CHL00194 116 -YPYIPLMKLKSDIEQKL 132 (317)
T ss_pred -cCCChHHHHHHHHHHHH
Confidence 11234777887765443
|
|
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.5e-11 Score=112.61 Aligned_cols=143 Identities=13% Similarity=0.043 Sum_probs=97.9
Q ss_pred EEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhcCCC
Q psy13409 20 IVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESA 99 (330)
Q Consensus 20 LITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~~g~ 99 (330)
|||||+|.||.++++.|++.|+.|+++.+. ..+|+++.++++.+++.. .
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~~v~~~~~~--------------------------~~~Dl~~~~~l~~~~~~~-----~ 49 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGFTNLVLRTH--------------------------KELDLTRQADVEAFFAKE-----K 49 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCCcEEEeecc--------------------------ccCCCCCHHHHHHHHhcc-----C
Confidence 699999999999999999999987765322 137999988888876652 5
Q ss_pred eeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccccccc----
Q psy13409 100 IHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEK---- 175 (330)
Q Consensus 100 iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~---- 175 (330)
+|++||+|+....... ........+++|+.++.++++.+. +.+.+++|++||.. .++... ..++++..
T Consensus 50 ~d~Vih~A~~~~~~~~-~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~~i~~SS~~-vyg~~~--~~~~~E~~~~~~ 121 (306)
T PLN02725 50 PTYVILAAAKVGGIHA-NMTYPADFIRENLQIQTNVIDAAY----RHGVKKLLFLGSSC-IYPKFA--PQPIPETALLTG 121 (306)
T ss_pred CCEEEEeeeeecccch-hhhCcHHHHHHHhHHHHHHHHHHH----HcCCCeEEEeCcee-ecCCCC--CCCCCHHHhccC
Confidence 7999999997532111 112334567789999777777664 34457899999964 444211 12233322
Q ss_pred CCCc-chhhHHhHHHHHHHHHHHHHHh
Q psy13409 176 GYSA-TGAYGRSKLANILFTTELAKRL 201 (330)
Q Consensus 176 ~~~~-~~~Y~asK~a~~~~~~~la~~~ 201 (330)
+..+ ...|+.+|.+.+.+++.+.++.
T Consensus 122 ~~~p~~~~Y~~sK~~~e~~~~~~~~~~ 148 (306)
T PLN02725 122 PPEPTNEWYAIAKIAGIKMCQAYRIQY 148 (306)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence 2222 2359999999998888876543
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.2e-11 Score=114.75 Aligned_cols=144 Identities=16% Similarity=0.087 Sum_probs=104.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
+++|||||+|.||++++++|+++| +|++++|... .+.+|++|.+++.++++..
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~~-----------------------~~~~Dl~d~~~~~~~~~~~--- 53 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG-NLIALDVHST-----------------------DYCGDFSNPEGVAETVRKI--- 53 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC-CEEEeccccc-----------------------cccCCCCCHHHHHHHHHhc---
Confidence 369999999999999999999999 7888877521 2357999999888877642
Q ss_pred CCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccccC
Q psy13409 97 ESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKG 176 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~ 176 (330)
++|++||+|+...... ..++.+..+.+|+.++.++++++.. .+ .++|++||.. .++... ..|.++..+
T Consensus 54 --~~D~Vih~Aa~~~~~~--~~~~~~~~~~~N~~~~~~l~~aa~~----~g-~~~v~~Ss~~-Vy~~~~--~~p~~E~~~ 121 (299)
T PRK09987 54 --RPDVIVNAAAHTAVDK--AESEPEFAQLLNATSVEAIAKAANE----VG-AWVVHYSTDY-VFPGTG--DIPWQETDA 121 (299)
T ss_pred --CCCEEEECCccCCcch--hhcCHHHHHHHHHHHHHHHHHHHHH----cC-CeEEEEccce-EECCCC--CCCcCCCCC
Confidence 5899999999764321 2233455678999998888776543 33 5788888855 444211 123444455
Q ss_pred CCcchhhHHhHHHHHHHHHHHHH
Q psy13409 177 YSATGAYGRSKLANILFTTELAK 199 (330)
Q Consensus 177 ~~~~~~Y~asK~a~~~~~~~la~ 199 (330)
..+...|+.+|.+.+.+++.++.
T Consensus 122 ~~P~~~Yg~sK~~~E~~~~~~~~ 144 (299)
T PRK09987 122 TAPLNVYGETKLAGEKALQEHCA 144 (299)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCC
Confidence 56677899999999988876543
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.4e-11 Score=103.34 Aligned_cols=103 Identities=27% Similarity=0.246 Sum_probs=83.3
Q ss_pred EEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhcCC
Q psy13409 19 AIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNES 98 (330)
Q Consensus 19 aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~~g 98 (330)
|+|+||+|.+|..++++|+++|++|+++.|++++.++ ..++.++.+|+.|++++.+.++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--------------~~~~~~~~~d~~d~~~~~~al~------- 59 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--------------SPGVEIIQGDLFDPDSVKAALK------- 59 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--------------CTTEEEEESCTTCHHHHHHHHT-------
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--------------ccccccceeeehhhhhhhhhhh-------
Confidence 6899999999999999999999999999999987554 3478899999999988877765
Q ss_pred CeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCccc
Q psy13409 99 AIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTW 161 (330)
Q Consensus 99 ~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~ 161 (330)
..|++|+++|.... + ...++.+++.+.+.+..++|++||.....
T Consensus 60 ~~d~vi~~~~~~~~-------~------------~~~~~~~~~a~~~~~~~~~v~~s~~~~~~ 103 (183)
T PF13460_consen 60 GADAVIHAAGPPPK-------D------------VDAAKNIIEAAKKAGVKRVVYLSSAGVYR 103 (183)
T ss_dssp TSSEEEECCHSTTT-------H------------HHHHHHHHHHHHHTTSSEEEEEEETTGTT
T ss_pred hcchhhhhhhhhcc-------c------------ccccccccccccccccccceeeeccccCC
Confidence 46999999975432 1 33466677777777778999999976433
|
... |
| >KOG1429|consensus | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.1e-12 Score=115.21 Aligned_cols=185 Identities=15% Similarity=0.115 Sum_probs=136.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
.+.+++++||||+|.||.+++..|..+|+.|++++.-.....+....+-. ..++..+.-|+.. .++..
T Consensus 24 p~~~lrI~itGgaGFIgSHLvdkLm~egh~VIa~Dn~ftg~k~n~~~~~~-------~~~fel~~hdv~~-----pl~~e 91 (350)
T KOG1429|consen 24 PSQNLRILITGGAGFIGSHLVDKLMTEGHEVIALDNYFTGRKENLEHWIG-------HPNFELIRHDVVE-----PLLKE 91 (350)
T ss_pred CCCCcEEEEecCcchHHHHHHHHHHhcCCeEEEEecccccchhhcchhcc-------CcceeEEEeechh-----HHHHH
Confidence 46789999999999999999999999999999999866554444333322 3455556666643 35444
Q ss_pred HHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccc
Q psy13409 93 ILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDIN 172 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~ 172 (330)
+|.++|.|....+.+.. ...-.++.+|+.+.++.+..+.. -++++++.|+ +..+|.+..++.+.+
T Consensus 92 -------vD~IyhLAapasp~~y~--~npvktIktN~igtln~lglakr-----v~aR~l~aST-seVYgdp~~hpq~e~ 156 (350)
T KOG1429|consen 92 -------VDQIYHLAAPASPPHYK--YNPVKTIKTNVIGTLNMLGLAKR-----VGARFLLAST-SEVYGDPLVHPQVET 156 (350)
T ss_pred -------hhhhhhhccCCCCcccc--cCccceeeecchhhHHHHHHHHH-----hCceEEEeec-ccccCCcccCCCccc
Confidence 49999999988766433 22245688899998887766533 2477777776 557887666664444
Q ss_pred c---ccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 173 L---EKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 173 ~---~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
+ .++....++|...|.+.+.|+..+.++.+.+ .-..+.+|+||-+|++
T Consensus 157 ywg~vnpigpr~cydegKr~aE~L~~~y~k~~giE-----------------------------~rIaRifNtyGPrm~~ 207 (350)
T KOG1429|consen 157 YWGNVNPIGPRSCYDEGKRVAETLCYAYHKQEGIE-----------------------------VRIARIFNTYGPRMHM 207 (350)
T ss_pred cccccCcCCchhhhhHHHHHHHHHHHHhhcccCcE-----------------------------EEEEeeecccCCcccc
Confidence 4 4466788899999999999999999988743 3456789999999999
Q ss_pred CCCC
Q psy13409 250 HPPG 253 (330)
Q Consensus 250 ~~~~ 253 (330)
-+++
T Consensus 208 ~dgr 211 (350)
T KOG1429|consen 208 DDGR 211 (350)
T ss_pred CCCh
Confidence 8864
|
|
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.8e-11 Score=112.03 Aligned_cols=138 Identities=25% Similarity=0.239 Sum_probs=94.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
+++|||||+|-||.++.+.|.++|+.|+.+.|+ .+|++|.+++.+++.+.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~---------------------------~~dl~d~~~~~~~~~~~--- 50 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRS---------------------------DLDLTDPEAVAKLLEAF--- 50 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTT---------------------------CS-TTSHHHHHHHHHHH---
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCch---------------------------hcCCCCHHHHHHHHHHh---
Confidence 479999999999999999999999999998666 47999999999998876
Q ss_pred CCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccccC
Q psy13409 97 ESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKG 176 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~ 176 (330)
++|++||+||...+ +.-+.+.+..+.+|+.++.++.+.+.. .+.++|++||..-.-|. ...+..+.+.
T Consensus 51 --~pd~Vin~aa~~~~--~~ce~~p~~a~~iN~~~~~~la~~~~~-----~~~~li~~STd~VFdG~---~~~~y~E~d~ 118 (286)
T PF04321_consen 51 --KPDVVINCAAYTNV--DACEKNPEEAYAINVDATKNLAEACKE-----RGARLIHISTDYVFDGD---KGGPYTEDDP 118 (286)
T ss_dssp ----SEEEE------H--HHHHHSHHHHHHHHTHHHHHHHHHHHH-----CT-EEEEEEEGGGS-SS---TSSSB-TTS-
T ss_pred --CCCeEeccceeecH--HhhhhChhhhHHHhhHHHHHHHHHHHH-----cCCcEEEeeccEEEcCC---cccccccCCC
Confidence 68999999997632 122334567788999998887776543 24799999996432232 2223444555
Q ss_pred CCcchhhHHhHHHHHHHHHH
Q psy13409 177 YSATGAYGRSKLANILFTTE 196 (330)
Q Consensus 177 ~~~~~~Y~asK~a~~~~~~~ 196 (330)
..+...|+.+|+..+..++.
T Consensus 119 ~~P~~~YG~~K~~~E~~v~~ 138 (286)
T PF04321_consen 119 PNPLNVYGRSKLEGEQAVRA 138 (286)
T ss_dssp ---SSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 67788999999998887776
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.8e-10 Score=113.68 Aligned_cols=131 Identities=16% Similarity=0.195 Sum_probs=87.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCC---CEEEEEecChh---HHHHHHHHHH---------Hhhcc-c--CCCCeEEE
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRG---ARVIMACRSLE---KAETAADDIR---------TSLKD-V--KDAGEVVI 75 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G---~~Vil~~R~~~---~l~~~~~~l~---------~~~~~-~--~~~~~v~~ 75 (330)
++||+++||||||.||.++++.|++.+ .+|++..|... ..++...++. +.... . ....++.+
T Consensus 9 ~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~ 88 (491)
T PLN02996 9 LENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTP 88 (491)
T ss_pred hCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEE
Confidence 789999999999999999999999864 26888888653 1222211111 11000 0 01268999
Q ss_pred EEccCCC-------HHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCC
Q psy13409 76 RQLDLSS-------LKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAP 148 (330)
Q Consensus 76 i~~Dls~-------~~si~~l~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~ 148 (330)
+.+|++. .+.++.+++ .+|++||+|+..... +..+..+.+|+.|+.++++.+... .+.
T Consensus 89 i~GDl~~~~LGLs~~~~~~~l~~-------~vD~ViH~AA~v~~~-----~~~~~~~~~Nv~gt~~ll~~a~~~---~~~ 153 (491)
T PLN02996 89 VPGDISYDDLGVKDSNLREEMWK-------EIDIVVNLAATTNFD-----ERYDVALGINTLGALNVLNFAKKC---VKV 153 (491)
T ss_pred EecccCCcCCCCChHHHHHHHHh-------CCCEEEECccccCCc-----CCHHHHHHHHHHHHHHHHHHHHhc---CCC
Confidence 9999984 333444433 479999999976421 356778899999988877765432 123
Q ss_pred CeEEEEcCCCc
Q psy13409 149 ARIINLSSLAH 159 (330)
Q Consensus 149 g~IV~iSS~~~ 159 (330)
.++|++||...
T Consensus 154 k~~V~vST~~v 164 (491)
T PLN02996 154 KMLLHVSTAYV 164 (491)
T ss_pred CeEEEEeeeEE
Confidence 58899888653
|
|
| >COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.3e-11 Score=108.70 Aligned_cols=174 Identities=14% Similarity=0.085 Sum_probs=128.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
++|++||||-+|--|..+++.|+++|+.|..+.|..+..+...-.+.. .....+.+++.+.+|++|..++.++++.+
T Consensus 1 ~~K~ALITGITGQDGsYLa~lLLekGY~VhGi~Rrss~~n~~ri~L~~--~~~~~~~~l~l~~gDLtD~~~l~r~l~~v- 77 (345)
T COG1089 1 MGKVALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYE--DPHLNDPRLHLHYGDLTDSSNLLRILEEV- 77 (345)
T ss_pred CCceEEEecccCCchHHHHHHHHhcCcEEEEEeeccccCCcccceecc--ccccCCceeEEEeccccchHHHHHHHHhc-
Confidence 479999999999999999999999999999998875432221101111 11123566999999999999999888877
Q ss_pred hcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccc
Q psy13409 95 DNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLE 174 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~ 174 (330)
.+|-+.|.|+.+.. ..+.+....+.+++..|+.+++.++--.- ++..-.+..|.+..+|. ....|..+.
T Consensus 78 ----~PdEIYNLaAQS~V--~vSFe~P~~T~~~~~iGtlrlLEaiR~~~---~~~~rfYQAStSE~fG~--v~~~pq~E~ 146 (345)
T COG1089 78 ----QPDEIYNLAAQSHV--GVSFEQPEYTADVDAIGTLRLLEAIRILG---EKKTRFYQASTSELYGL--VQEIPQKET 146 (345)
T ss_pred ----Cchhheeccccccc--cccccCcceeeeechhHHHHHHHHHHHhC---CcccEEEecccHHhhcC--cccCccccC
Confidence 78999999987643 34566677888999999888876653321 11233444555667773 334555666
Q ss_pred cCCCcchhhHHhHHHHHHHHHHHHHHhc
Q psy13409 175 KGYSATGAYGRSKLANILFTTELAKRLQ 202 (330)
Q Consensus 175 ~~~~~~~~Y~asK~a~~~~~~~la~~~~ 202 (330)
.|+.+.++|++||....-++..+...++
T Consensus 147 TPFyPrSPYAvAKlYa~W~tvNYResYg 174 (345)
T COG1089 147 TPFYPRSPYAVAKLYAYWITVNYRESYG 174 (345)
T ss_pred CCCCCCCHHHHHHHHHHheeeehHhhcC
Confidence 7889999999999999999998888887
|
|
| >KOG4022|consensus | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.7e-09 Score=88.29 Aligned_cols=216 Identities=13% Similarity=0.092 Sum_probs=143.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
+-.+++|-||-|.+|.+++..|-..++-|.-++-.+..- .+.-+.+..|-+=.++-+++..++-
T Consensus 2 sagrVivYGGkGALGSacv~~FkannywV~siDl~eNe~----------------Ad~sI~V~~~~swtEQe~~v~~~vg 65 (236)
T KOG4022|consen 2 SAGRVIVYGGKGALGSACVEFFKANNYWVLSIDLSENEQ----------------ADSSILVDGNKSWTEQEQSVLEQVG 65 (236)
T ss_pred CCceEEEEcCcchHhHHHHHHHHhcCeEEEEEeeccccc----------------ccceEEecCCcchhHHHHHHHHHHH
Confidence 456789999999999999999999999988887765321 1122344555544455566666665
Q ss_pred hc--CCCeeEEEEcCCCCCCCCCC---ChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 95 DN--ESAIHLLINNAGVMMCPRQL---TEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 95 ~~--~g~iDvlInnAG~~~~~~~~---~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
+. ..++|.++|.||...-.... -..+.+-++.-.++....-.+.+-.+++. +|-.-..+.-++.-|.
T Consensus 66 ~sL~gekvDav~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~--GGLL~LtGAkaAl~gT------ 137 (236)
T KOG4022|consen 66 SSLQGEKVDAVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKP--GGLLQLTGAKAALGGT------ 137 (236)
T ss_pred HhhcccccceEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCC--CceeeecccccccCCC------
Confidence 53 34799999999865422111 11223345555555555445555555533 4555555555554454
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
|++..|+++|+|++.|+++||.+-.
T Consensus 138 --------PgMIGYGMAKaAVHqLt~SLaak~S----------------------------------------------- 162 (236)
T KOG4022|consen 138 --------PGMIGYGMAKAAVHQLTSSLAAKDS----------------------------------------------- 162 (236)
T ss_pred --------CcccchhHHHHHHHHHHHHhccccc-----------------------------------------------
Confidence 7889999999999999999987643
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecc
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYA 324 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~ 324 (330)
..++|--+.+|.|=..||||.|.+.+..+...| ...+.+++..+....+ ..+--+|+.+.
T Consensus 163 ----GlP~gsaa~~ilPVTLDTPMNRKwMP~ADfssW----------TPL~fi~e~flkWtt~-~~RPssGsLlq 222 (236)
T KOG4022|consen 163 ----GLPDGSAALTILPVTLDTPMNRKWMPNADFSSW----------TPLSFISEHFLKWTTE-TSRPSSGSLLQ 222 (236)
T ss_pred ----CCCCCceeEEEeeeeccCccccccCCCCcccCc----------ccHHHHHHHHHHHhcc-CCCCCCCceEE
Confidence 122788899999999999999998876554433 2346777777777543 33455666654
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=99.15 E-value=1e-09 Score=101.79 Aligned_cols=116 Identities=16% Similarity=0.143 Sum_probs=71.5
Q ss_pred EEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhcCC
Q psy13409 19 AIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNES 98 (330)
Q Consensus 19 aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~~g 98 (330)
+|||||+|.||.++++.|+++|++|++++|+........ ... ..|+.. .. ..+...
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~------------~~~----~~~~~~-~~-------~~~~~~ 56 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTK------------WEG----YKPWAP-LA-------ESEALE 56 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCccc------------cee----eecccc-cc-------hhhhcC
Confidence 689999999999999999999999999999876432110 000 112221 11 112234
Q ss_pred CeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCC-CeEEEEcCCCcccC
Q psy13409 99 AIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAP-ARIINLSSLAHTWG 162 (330)
Q Consensus 99 ~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~-g~IV~iSS~~~~~~ 162 (330)
.+|++||+||..........+.....+++|+.+...+++++ .+.+. ..+++.+|..+.++
T Consensus 57 ~~D~Vvh~a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~----~~~~~~~~~~i~~S~~~~yg 117 (292)
T TIGR01777 57 GADAVINLAGEPIADKRWTEERKQEIRDSRIDTTRALVEAI----AAAEQKPKVFISASAVGYYG 117 (292)
T ss_pred CCCEEEECCCCCcccccCCHHHHHHHHhcccHHHHHHHHHH----HhcCCCceEEEEeeeEEEeC
Confidence 68999999997543222333455667788999866655554 44433 23333344434444
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.6e-10 Score=118.01 Aligned_cols=103 Identities=17% Similarity=0.124 Sum_probs=80.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
++++||||+|+||.+++++|+++|++|++++|+.... ...++.++.+|+++.+++.++++
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~---------------~~~~v~~v~gDL~D~~~l~~al~----- 60 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDS---------------WPSSADFIAADIRDATAVESAMT----- 60 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhh---------------cccCceEEEeeCCCHHHHHHHHh-----
Confidence 3699999999999999999999999999999975321 01247789999999998887765
Q ss_pred CCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcC
Q psy13409 97 ESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSS 156 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS 156 (330)
.+|++||+|+...+ .+++|+.++.+++++ +.+.+.+++|++||
T Consensus 61 --~vD~VVHlAa~~~~-----------~~~vNv~GT~nLLeA----a~~~gvkr~V~iSS 103 (854)
T PRK05865 61 --GADVVAHCAWVRGR-----------NDHINIDGTANVLKA----MAETGTGRIVFTSS 103 (854)
T ss_pred --CCCEEEECCCcccc-----------hHHHHHHHHHHHHHH----HHHcCCCeEEEECC
Confidence 37999999985421 357899987665544 45555679999998
|
|
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.2e-09 Score=100.00 Aligned_cols=166 Identities=22% Similarity=0.228 Sum_probs=106.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCC-CEEEEEecChh---HHHHHHHHHHHh-hcccCCCCeEEEEEccCCCH------HH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRG-ARVIMACRSLE---KAETAADDIRTS-LKDVKDAGEVVIRQLDLSSL------KS 85 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G-~~Vil~~R~~~---~l~~~~~~l~~~-~~~~~~~~~v~~i~~Dls~~------~s 85 (330)
+++++|||||.+|+.++.+|+.+- ++|++..|-.+ ..+++.+.+... .-++...++|..+..|++.+ ..
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~~ 80 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSERT 80 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHHH
Confidence 579999999999999999999775 58999888654 233333333200 00223678999999999843 33
Q ss_pred HHHHHHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCC
Q psy13409 86 VRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGS 165 (330)
Q Consensus 86 i~~l~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~ 165 (330)
.+.+.+ .+|.+|||++..... ..+.+....|+.|...+++.+ ...+.+.+.+|||++..-.. .
T Consensus 81 ~~~La~-------~vD~I~H~gA~Vn~v-----~pYs~L~~~NVlGT~evlrLa----~~gk~Kp~~yVSsisv~~~~-~ 143 (382)
T COG3320 81 WQELAE-------NVDLIIHNAALVNHV-----FPYSELRGANVLGTAEVLRLA----ATGKPKPLHYVSSISVGETE-Y 143 (382)
T ss_pred HHHHhh-------hcceEEecchhhccc-----CcHHHhcCcchHhHHHHHHHH----hcCCCceeEEEeeeeecccc-c
Confidence 444443 479999999976422 334556678999966665543 33334569999998643221 1
Q ss_pred Cccccccc-------ccCCCcchhhHHhHHHHHHHHHHHHH
Q psy13409 166 MHFEDINL-------EKGYSATGAYGRSKLANILFTTELAK 199 (330)
Q Consensus 166 ~~~~~~~~-------~~~~~~~~~Y~asK~a~~~~~~~la~ 199 (330)
......+. .......+.|+-||-+.+.+++....
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~GY~~SKwvaE~Lvr~A~~ 184 (382)
T COG3320 144 YSNFTVDFDEISPTRNVGQGLAGGYGRSKWVAEKLVREAGD 184 (382)
T ss_pred cCCCccccccccccccccCccCCCcchhHHHHHHHHHHHhh
Confidence 11111111 12233456899999999998887654
|
|
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.3e-09 Score=100.14 Aligned_cols=145 Identities=12% Similarity=0.036 Sum_probs=93.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
.+++|||||+|.||.++++.|+++|++|++.. .|+++.+.+...++.
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~------------------------------~~~~~~~~v~~~l~~--- 55 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGS------------------------------GRLENRASLEADIDA--- 55 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCEEEEec------------------------------CccCCHHHHHHHHHh---
Confidence 47899999999999999999999999886432 123344444444332
Q ss_pred cCCCeeEEEEcCCCCCCCC-CCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCC--Cc--ccc
Q psy13409 96 NESAIHLLINNAGVMMCPR-QLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGS--MH--FED 170 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~~~-~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~--~~--~~~ 170 (330)
.++|++||+||...... +...++....+++|+.++.++++++.. .+ -+.+++||.. .++... +. -.+
T Consensus 56 --~~~D~ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~----~g-v~~v~~sS~~-vy~~~~~~p~~~~~~ 127 (298)
T PLN02778 56 --VKPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRE----RG-LVLTNYATGC-IFEYDDAHPLGSGIG 127 (298)
T ss_pred --cCCCEEEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHH----hC-CCEEEEecce-EeCCCCCCCcccCCC
Confidence 15899999999764321 122345577899999998888887644 22 2455666543 232111 00 011
Q ss_pred ccccc-CCCcchhhHHhHHHHHHHHHHHHHHh
Q psy13409 171 INLEK-GYSATGAYGRSKLANILFTTELAKRL 201 (330)
Q Consensus 171 ~~~~~-~~~~~~~Y~asK~a~~~~~~~la~~~ 201 (330)
++.+. +.+....|+.||.+.+.+++.++..+
T Consensus 128 ~~Ee~~p~~~~s~Yg~sK~~~E~~~~~y~~~~ 159 (298)
T PLN02778 128 FKEEDTPNFTGSFYSKTKAMVEELLKNYENVC 159 (298)
T ss_pred CCcCCCCCCCCCchHHHHHHHHHHHHHhhccE
Confidence 22222 22334689999999999998876543
|
|
| >KOG1430|consensus | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.8e-09 Score=103.73 Aligned_cols=163 Identities=18% Similarity=0.202 Sum_probs=112.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCC--CEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRG--ARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G--~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
.++.+++||||+|.+|++++.+|.+.+ ..|.+++..+.... +.++.... ...++.++.+|+.+..++.+.+.
T Consensus 2 ~~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~-~~~e~~~~-----~~~~v~~~~~D~~~~~~i~~a~~ 75 (361)
T KOG1430|consen 2 EKKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSN-LPAELTGF-----RSGRVTVILGDLLDANSISNAFQ 75 (361)
T ss_pred CcCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccc-cchhhhcc-----cCCceeEEecchhhhhhhhhhcc
Confidence 467899999999999999999999998 68999998764211 11111110 26789999999999888777654
Q ss_pred HHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccc
Q psy13409 92 EILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDI 171 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~ 171 (330)
.. .++|+|+...+. ....+.+..+++|+.| ++.++....+.+..++|++||..-.++.......
T Consensus 76 -------~~-~Vvh~aa~~~~~--~~~~~~~~~~~vNV~g----T~nvi~~c~~~~v~~lIYtSs~~Vvf~g~~~~n~-- 139 (361)
T KOG1430|consen 76 -------GA-VVVHCAASPVPD--FVENDRDLAMRVNVNG----TLNVIEACKELGVKRLIYTSSAYVVFGGEPIING-- 139 (361)
T ss_pred -------Cc-eEEEeccccCcc--ccccchhhheeecchh----HHHHHHHHHHhCCCEEEEecCceEEeCCeecccC--
Confidence 34 666666655432 2233567788899999 4445555566777899999998766664221221
Q ss_pred ccccCCCc--chhhHHhHHHHHHHHHHHH
Q psy13409 172 NLEKGYSA--TGAYGRSKLANILFTTELA 198 (330)
Q Consensus 172 ~~~~~~~~--~~~Y~asK~a~~~~~~~la 198 (330)
++..+++. ...|+.||+-.+.++...+
T Consensus 140 ~E~~p~p~~~~d~Y~~sKa~aE~~Vl~an 168 (361)
T KOG1430|consen 140 DESLPYPLKHIDPYGESKALAEKLVLEAN 168 (361)
T ss_pred CCCCCCccccccccchHHHHHHHHHHHhc
Confidence 22223332 3589999999888887654
|
|
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.1e-09 Score=99.94 Aligned_cols=137 Identities=24% Similarity=0.229 Sum_probs=107.1
Q ss_pred EEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhcCC
Q psy13409 19 AIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNES 98 (330)
Q Consensus 19 aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~~g 98 (330)
+||||++|-+|.++++.|. .+..|+.++|.. +|++|.+.+.+++++.
T Consensus 3 iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~---------------------------~Ditd~~~v~~~i~~~----- 49 (281)
T COG1091 3 ILITGANGQLGTELRRALP-GEFEVIATDRAE---------------------------LDITDPDAVLEVIRET----- 49 (281)
T ss_pred EEEEcCCChHHHHHHHHhC-CCceEEeccCcc---------------------------ccccChHHHHHHHHhh-----
Confidence 9999999999999999999 678999887653 7999999999999886
Q ss_pred CeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccccCCC
Q psy13409 99 AIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYS 178 (330)
Q Consensus 99 ~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~~~ 178 (330)
++|++||+|++... +.-+.+.+..+.+|..++.++.+++-. -+..+|++|+-.-.-|.. ..|..+.+...
T Consensus 50 ~PDvVIn~AAyt~v--D~aE~~~e~A~~vNa~~~~~lA~aa~~-----~ga~lVhiSTDyVFDG~~---~~~Y~E~D~~~ 119 (281)
T COG1091 50 RPDVVINAAAYTAV--DKAESEPELAFAVNATGAENLARAAAE-----VGARLVHISTDYVFDGEK---GGPYKETDTPN 119 (281)
T ss_pred CCCEEEECcccccc--ccccCCHHHHHHhHHHHHHHHHHHHHH-----hCCeEEEeecceEecCCC---CCCCCCCCCCC
Confidence 89999999997643 223344677889999999999887633 257899999865332321 22334445567
Q ss_pred cchhhHHhHHHHHHHHHHHH
Q psy13409 179 ATGAYGRSKLANILFTTELA 198 (330)
Q Consensus 179 ~~~~Y~asK~a~~~~~~~la 198 (330)
+...|+.||.+-+..+++..
T Consensus 120 P~nvYG~sKl~GE~~v~~~~ 139 (281)
T COG1091 120 PLNVYGRSKLAGEEAVRAAG 139 (281)
T ss_pred ChhhhhHHHHHHHHHHHHhC
Confidence 78899999999998888775
|
|
| >PF08643 DUF1776: Fungal family of unknown function (DUF1776); InterPro: IPR013952 This is a fungal protein of unknown function | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.1e-09 Score=96.49 Aligned_cols=164 Identities=18% Similarity=0.186 Sum_probs=124.9
Q ss_pred CCEEEEEcC-CCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 16 GKTAIVTGS-NTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 16 gk~aLITGa-s~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
..+|+|.|. +.-|++.+|..|-++|+-|+++..+.++.....++ ....+.....|..+..++...+.+..
T Consensus 3 ~evVvI~Gs~~~PltR~la~DLeRRGFIV~v~~~~~ed~~~ve~e---------~~~dI~~L~ld~~~~~~~~~~l~~f~ 73 (299)
T PF08643_consen 3 KEVVVIAGSPHDPLTRSLALDLERRGFIVYVTVSSAEDEKYVESE---------DRPDIRPLWLDDSDPSSIHASLSRFA 73 (299)
T ss_pred eeEEEEECCCCCccHHHHHHHHhhCCeEEEEEeCCHHHHHHHHhc---------cCCCCCCcccCCCCCcchHHHHHHHH
Confidence 468899996 79999999999999999999999998765444322 24458888888877777666666655
Q ss_pred hcCC--------------CeeEEEEcCCCCCC---CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhh--CCCeEEEE-
Q psy13409 95 DNES--------------AIHLLINNAGVMMC---PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKS--APARIINL- 154 (330)
Q Consensus 95 ~~~g--------------~iDvlInnAG~~~~---~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~--~~g~IV~i- 154 (330)
+... .+..+|.......+ .+.++.+.|.+.++.|+..++.+++.++|++..+ .+.+||++
T Consensus 74 ~~L~~p~~p~~~~~~h~l~L~svi~~Psl~yp~gPie~i~~s~~~~~ln~~ll~~~~~~q~lLPlL~~~~~~~~~iil~~ 153 (299)
T PF08643_consen 74 SLLSRPHVPFPGAPPHHLQLKSVIFIPSLSYPTGPIETISPSSWADELNTRLLTPILTIQGLLPLLRSRSNQKSKIILFN 153 (299)
T ss_pred HHhcCCCCCCCCCCCceeEEEEEEEecCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEe
Confidence 4332 34556655554433 2688999999999999999999999999999882 34555555
Q ss_pred cCCCcccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhc
Q psy13409 155 SSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQ 202 (330)
Q Consensus 155 SS~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~ 202 (330)
.|+...+.. +..+.-++...++.+|+++|.+|++
T Consensus 154 Psi~ssl~~--------------PfhspE~~~~~al~~~~~~LrrEl~ 187 (299)
T PF08643_consen 154 PSISSSLNP--------------PFHSPESIVSSALSSFFTSLRRELR 187 (299)
T ss_pred CchhhccCC--------------CccCHHHHHHHHHHHHHHHHHHHhh
Confidence 465555553 6677788889999999999999998
|
One of the proteins P32792 from SWISSPROT has been localised to the mitochondria []. |
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.5e-10 Score=101.16 Aligned_cols=117 Identities=24% Similarity=0.254 Sum_probs=74.8
Q ss_pred EEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhcCC
Q psy13409 19 AIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNES 98 (330)
Q Consensus 19 aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~~g 98 (330)
++||||||-||++++.+|.+.|++|+++.|+..+.+... ...+. ..+.++ +..+ .
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~------------~~~v~-------~~~~~~----~~~~--~ 55 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQNL------------HPNVT-------LWEGLA----DALT--L 55 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCCeEEEEEcCCcchhhhc------------Ccccc-------ccchhh----hccc--C
Confidence 589999999999999999999999999999987543211 11111 111111 1111 1
Q ss_pred CeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCC-CeEEEEcCCCcccCCC
Q psy13409 99 AIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAP-ARIINLSSLAHTWGDG 164 (330)
Q Consensus 99 ~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~-g~IV~iSS~~~~~~~~ 164 (330)
.+|++||.||..-.....+.+.-+...+..+.. ++.++....+... .++..=+|..|.+|+.
T Consensus 56 ~~DavINLAG~~I~~rrWt~~~K~~i~~SRi~~----T~~L~e~I~~~~~~P~~~isaSAvGyYG~~ 118 (297)
T COG1090 56 GIDAVINLAGEPIAERRWTEKQKEEIRQSRINT----TEKLVELIAASETKPKVLISASAVGYYGHS 118 (297)
T ss_pred CCCEEEECCCCccccccCCHHHHHHHHHHHhHH----HHHHHHHHHhccCCCcEEEecceEEEecCC
Confidence 689999999976544445656556665555555 6666666554433 3333334666778863
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.7e-08 Score=110.43 Aligned_cols=230 Identities=16% Similarity=0.100 Sum_probs=135.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCC----CEEEEEecChhHHH---HHHHHHHHhhc-ccCCCCeEEEEEccCCCHHH-
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRG----ARVIMACRSLEKAE---TAADDIRTSLK-DVKDAGEVVIRQLDLSSLKS- 85 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G----~~Vil~~R~~~~l~---~~~~~l~~~~~-~~~~~~~v~~i~~Dls~~~s- 85 (330)
..++++||||+|.||.+++++|++++ ++|+...|+..... +..+.+..... ......++.++.+|++++.-
T Consensus 970 ~~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lg 1049 (1389)
T TIGR03443 970 TPITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFG 1049 (1389)
T ss_pred CCceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCccCC
Confidence 35899999999999999999999987 78999999754322 22111111000 00112478999999985420
Q ss_pred -HHHHHHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCC
Q psy13409 86 -VRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDG 164 (330)
Q Consensus 86 -i~~l~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~ 164 (330)
-...++++. ..+|++||+|+..... ..+......|+.|..++++.+. +.+..+++++||.+......
T Consensus 1050 l~~~~~~~l~---~~~d~iiH~Aa~~~~~-----~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~v~vSS~~v~~~~~ 1117 (1389)
T TIGR03443 1050 LSDEKWSDLT---NEVDVIIHNGALVHWV-----YPYSKLRDANVIGTINVLNLCA----EGKAKQFSFVSSTSALDTEY 1117 (1389)
T ss_pred cCHHHHHHHH---hcCCEEEECCcEecCc-----cCHHHHHHhHHHHHHHHHHHHH----hCCCceEEEEeCeeecCccc
Confidence 011122222 2579999999976421 2234445679999877777653 33446899999975432110
Q ss_pred CC---------ccccccccc-----CCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhh
Q psy13409 165 SM---------HFEDINLEK-----GYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTIL 230 (330)
Q Consensus 165 ~~---------~~~~~~~~~-----~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (330)
.. ...+++... .......|+.||.+.+.+++..+
T Consensus 1118 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~aE~l~~~~~-------------------------------- 1165 (1389)
T TIGR03443 1118 YVNLSDELVQAGGAGIPESDDLMGSSKGLGTGYGQSKWVAEYIIREAG-------------------------------- 1165 (1389)
T ss_pred ccchhhhhhhccCCCCCcccccccccccCCCChHHHHHHHHHHHHHHH--------------------------------
Confidence 00 000111111 11233569999999998887643
Q ss_pred hhcccCCCCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHH---Hhh-------hhhccChH
Q psy13409 231 LCDANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQ---RVG-------GLFIKSPL 300 (330)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~---~~~-------~~~~~~~~ 300 (330)
. .|+.+..+.||.|-.+..............+.. .++ ..-+..++
T Consensus 1166 ----------------------~---~g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~Vd 1220 (1389)
T TIGR03443 1166 ----------------------K---RGLRGCIVRPGYVTGDSKTGATNTDDFLLRMLKGCIQLGLIPNINNTVNMVPVD 1220 (1389)
T ss_pred ----------------------h---CCCCEEEECCCccccCCCcCCCCchhHHHHHHHHHHHhCCcCCCCCccccccHH
Confidence 2 478899999999976633222111111111111 111 12255689
Q ss_pred HHHHHHHHhhccc
Q psy13409 301 QGAQTTLYCALDK 313 (330)
Q Consensus 301 e~a~~~~~l~~~~ 313 (330)
++|++++.++..+
T Consensus 1221 dva~ai~~~~~~~ 1233 (1389)
T TIGR03443 1221 HVARVVVAAALNP 1233 (1389)
T ss_pred HHHHHHHHHHhCC
Confidence 9999999997554
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.3e-08 Score=86.50 Aligned_cols=85 Identities=16% Similarity=0.203 Sum_probs=71.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
++++||||+ |+|.++++.|+++|++|++++|+.++.+.+...+. ...++.++.+|++|++++.++++.+.+.
T Consensus 1 m~vlVtGGt-G~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~~l~-------~~~~i~~~~~Dv~d~~sv~~~i~~~l~~ 72 (177)
T PRK08309 1 MHALVIGGT-GMLKRVSLWLCEKGFHVSVIARREVKLENVKREST-------TPESITPLPLDYHDDDALKLAIKSTIEK 72 (177)
T ss_pred CEEEEECcC-HHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHhh-------cCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 479999998 77778999999999999999999877655544332 1357888999999999999999999998
Q ss_pred CCCeeEEEEcCCC
Q psy13409 97 ESAIHLLINNAGV 109 (330)
Q Consensus 97 ~g~iDvlInnAG~ 109 (330)
++.+|++|+.+-.
T Consensus 73 ~g~id~lv~~vh~ 85 (177)
T PRK08309 73 NGPFDLAVAWIHS 85 (177)
T ss_pred cCCCeEEEEeccc
Confidence 8999999987754
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.4e-08 Score=94.60 Aligned_cols=106 Identities=15% Similarity=0.047 Sum_probs=76.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhcC
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNE 97 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~~ 97 (330)
+++||||+|.||++++++|+++|++|.++.|+.++.. ...+..+.+|+.|++++...++.. +..
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~---------------~~~~~~~~~d~~d~~~l~~a~~~~-~~~ 64 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSA---------------GPNEKHVKFDWLDEDTWDNPFSSD-DGM 64 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCcccc---------------CCCCccccccCCCHHHHHHHHhcc-cCc
Confidence 4899999999999999999999999999999976421 123456788999999998887643 223
Q ss_pred CC-eeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCC
Q psy13409 98 SA-IHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLA 158 (330)
Q Consensus 98 g~-iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~ 158 (330)
.. +|.++++++... +..+ ..+.+++.+++.+-++||++||..
T Consensus 65 ~g~~d~v~~~~~~~~-------~~~~------------~~~~~i~aa~~~gv~~~V~~Ss~~ 107 (285)
T TIGR03649 65 EPEISAVYLVAPPIP-------DLAP------------PMIKFIDFARSKGVRRFVLLSASI 107 (285)
T ss_pred CCceeEEEEeCCCCC-------ChhH------------HHHHHHHHHHHcCCCEEEEeeccc
Confidence 34 899998876421 1111 123445555666668999999854
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.1e-08 Score=104.74 Aligned_cols=144 Identities=14% Similarity=0.065 Sum_probs=97.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
..+++|||||+|.||+++++.|.++|++|.. ...|++|.+++...+...
T Consensus 379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~~v~~------------------------------~~~~l~d~~~v~~~i~~~- 427 (668)
T PLN02260 379 PSLKFLIYGRTGWIGGLLGKLCEKQGIAYEY------------------------------GKGRLEDRSSLLADIRNV- 427 (668)
T ss_pred CCceEEEECCCchHHHHHHHHHHhCCCeEEe------------------------------eccccccHHHHHHHHHhh-
Confidence 4568999999999999999999999988631 113567777776666543
Q ss_pred hcCCCeeEEEEcCCCCCCC-CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCC----Cccc
Q psy13409 95 DNESAIHLLINNAGVMMCP-RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGS----MHFE 169 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~-~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~----~~~~ 169 (330)
.+|++||+|+....+ .+..+++....+++|+.++.++++++.. .+ .+.|++||.. .++... ....
T Consensus 428 ----~pd~Vih~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~----~g-~~~v~~Ss~~-v~~~~~~~~~~~~~ 497 (668)
T PLN02260 428 ----KPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRE----NG-LLMMNFATGC-IFEYDAKHPEGSGI 497 (668)
T ss_pred ----CCCEEEECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHH----cC-CeEEEEcccc-eecCCcccccccCC
Confidence 689999999976432 2233455678889999998888887654 22 3567776643 332110 0011
Q ss_pred ccccccCC-CcchhhHHhHHHHHHHHHHHHH
Q psy13409 170 DINLEKGY-SATGAYGRSKLANILFTTELAK 199 (330)
Q Consensus 170 ~~~~~~~~-~~~~~Y~asK~a~~~~~~~la~ 199 (330)
+++++.++ +....|+.||.+.+.+++.++.
T Consensus 498 p~~E~~~~~~~~~~Yg~sK~~~E~~~~~~~~ 528 (668)
T PLN02260 498 GFKEEDKPNFTGSFYSKTKAMVEELLREYDN 528 (668)
T ss_pred CCCcCCCCCCCCChhhHHHHHHHHHHHhhhh
Confidence 33333322 3347899999999999987753
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.5e-08 Score=100.67 Aligned_cols=156 Identities=15% Similarity=0.073 Sum_probs=109.3
Q ss_pred CCEEE----EEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 16 GKTAI----VTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 16 gk~aL----ITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
|..+| |+||++|+|.+++..|...|+.|+.+.+...+... ....++..+.+|.+..+..+.
T Consensus 34 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~~v~~~~~~~~~~~~------------~~~~~~~~~~~d~~~~~~~~~--- 98 (450)
T PRK08261 34 GQPLLDGPVLVGGAGRLAEALAALLAGLGYDVVANNDGGLTWAA------------GWGDRFGALVFDATGITDPAD--- 98 (450)
T ss_pred CCCCCCCceEEccCchhHHHHHHHHhhCCCeeeecCcccccccc------------CcCCcccEEEEECCCCCCHHH---
Confidence 44555 78888999999999999999999998765441100 012233333344443322221
Q ss_pred HHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccc
Q psy13409 92 EILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDI 171 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~ 171 (330)
+.+.+.+++.+++.|.. .|+||+++|..+..+
T Consensus 99 -------------------------------------l~~~~~~~~~~l~~l~~--~griv~i~s~~~~~~--------- 130 (450)
T PRK08261 99 -------------------------------------LKALYEFFHPVLRSLAP--CGRVVVLGRPPEAAA--------- 130 (450)
T ss_pred -------------------------------------HHHHHHHHHHHHHhccC--CCEEEEEccccccCC---------
Confidence 12334557777777753 589999999765322
Q ss_pred ccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCC
Q psy13409 172 NLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHP 251 (330)
Q Consensus 172 ~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (330)
...|+++|+++.+|+|++++|+.
T Consensus 131 --------~~~~~~akaal~gl~rsla~E~~------------------------------------------------- 153 (450)
T PRK08261 131 --------DPAAAAAQRALEGFTRSLGKELR------------------------------------------------- 153 (450)
T ss_pred --------chHHHHHHHHHHHHHHHHHHHhh-------------------------------------------------
Confidence 34699999999999999999995
Q ss_pred CCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceeccc
Q psy13409 252 PGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAK 325 (330)
Q Consensus 252 ~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~ 325 (330)
.+|+++.|.|++ ..++++++.+.|+++. .+.+++|+.+..
T Consensus 154 -----~gi~v~~i~~~~----------------------------~~~~~~~~~~~~l~s~-~~a~~~g~~i~~ 193 (450)
T PRK08261 154 -----RGATAQLVYVAP----------------------------GAEAGLESTLRFFLSP-RSAYVSGQVVRV 193 (450)
T ss_pred -----cCCEEEEEecCC----------------------------CCHHHHHHHHHHhcCC-ccCCccCcEEEe
Confidence 689999998874 2578888899999855 456888887754
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.6e-08 Score=94.10 Aligned_cols=117 Identities=16% Similarity=0.178 Sum_probs=73.9
Q ss_pred CCCCEEEEE----cCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 14 LDGKTAIVT----GSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 14 ~~gk~aLIT----Gas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
...++|||| ||+|.||.+++++|+++|++|+++.|+..........-...+..+ ....+.++.+|+++ ++.+
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l-~~~~v~~v~~D~~d---~~~~ 125 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSEL-SSAGVKTVWGDPAD---VKSK 125 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHh-hhcCceEEEecHHH---HHhh
Confidence 455889999 999999999999999999999999998754322110000000000 12247788899876 3333
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccC
Q psy13409 90 AQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWG 162 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~ 162 (330)
+. ...+|++||+++.. . .+ ++.+++.+.+.+-+++|++||.. .++
T Consensus 126 ~~-----~~~~d~Vi~~~~~~----------~--------~~----~~~ll~aa~~~gvkr~V~~SS~~-vyg 170 (378)
T PLN00016 126 VA-----GAGFDVVYDNNGKD----------L--------DE----VEPVADWAKSPGLKQFLFCSSAG-VYK 170 (378)
T ss_pred hc-----cCCccEEEeCCCCC----------H--------HH----HHHHHHHHHHcCCCEEEEEccHh-hcC
Confidence 21 13589999987621 1 11 23344444555567999999964 444
|
|
| >TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.1e-09 Score=93.90 Aligned_cols=100 Identities=11% Similarity=0.156 Sum_probs=74.8
Q ss_pred CEEEEEcC-CCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 17 KTAIVTGS-NTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 17 k~aLITGa-s~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
.+=.||.. +||||+++|+.|+++|++|+++++... +.. .. ...+|+++.++++.+++.+.+
T Consensus 15 ~VR~itN~SSGgIG~AIA~~la~~Ga~Vvlv~~~~~--------l~~------~~----~~~~Dv~d~~s~~~l~~~v~~ 76 (227)
T TIGR02114 15 SVRSITNHSTGHLGKIITETFLSAGHEVTLVTTKRA--------LKP------EP----HPNLSIREIETTKDLLITLKE 76 (227)
T ss_pred CceeecCCcccHHHHHHHHHHHHCCCEEEEEcChhh--------ccc------cc----CCcceeecHHHHHHHHHHHHH
Confidence 55566664 689999999999999999999876311 100 00 245899999999999999999
Q ss_pred cCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHH
Q psy13409 96 NESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTL 137 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~ 137 (330)
.++++|++|||||+... ..+.+.++|+++.. .+.|++.+
T Consensus 77 ~~g~iDiLVnnAgv~d~~~~~~~s~e~~~~~~~---~~~~~~~~ 117 (227)
T TIGR02114 77 LVQEHDILIHSMAVSDYTPVYMTDLEQVQASDN---LNEFLSKQ 117 (227)
T ss_pred HcCCCCEEEECCEeccccchhhCCHHHHhhhcc---hhhhhccc
Confidence 99999999999997643 35677788887643 45555543
|
In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity. |
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.9e-07 Score=95.88 Aligned_cols=130 Identities=13% Similarity=0.211 Sum_probs=87.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCC---EEEEEecChhH---HHHHHHHH---------HHhhccc---CCCCeEEE
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGA---RVIMACRSLEK---AETAADDI---------RTSLKDV---KDAGEVVI 75 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~---~Vil~~R~~~~---l~~~~~~l---------~~~~~~~---~~~~~v~~ 75 (330)
++||+++||||+|.||..+++.|++.+. +|++..|.... .++..+++ ++..... ....++.+
T Consensus 117 ~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~ 196 (605)
T PLN02503 117 LRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVP 196 (605)
T ss_pred hcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEE
Confidence 6899999999999999999999998653 68888885432 22222121 1111100 01358999
Q ss_pred EEccCCCHH------HHHHHHHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCC
Q psy13409 76 RQLDLSSLK------SVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPA 149 (330)
Q Consensus 76 i~~Dls~~~------si~~l~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g 149 (330)
+.+|++++. ..+.+.+ .+|++||+|+.... .+..+..+++|+.+..++++.+... ....
T Consensus 197 v~GDl~d~~LGLs~~~~~~L~~-------~vDiVIH~AA~v~f-----~~~~~~a~~vNV~GT~nLLelA~~~---~~lk 261 (605)
T PLN02503 197 VVGNVCESNLGLEPDLADEIAK-------EVDVIINSAANTTF-----DERYDVAIDINTRGPCHLMSFAKKC---KKLK 261 (605)
T ss_pred EEeeCCCcccCCCHHHHHHHHh-------cCCEEEECcccccc-----ccCHHHHHHHHHHHHHHHHHHHHHc---CCCC
Confidence 999999862 3333322 47999999997642 1456778899999988777765432 1235
Q ss_pred eEEEEcCCC
Q psy13409 150 RIINLSSLA 158 (330)
Q Consensus 150 ~IV~iSS~~ 158 (330)
++|++||..
T Consensus 262 ~fV~vSTay 270 (605)
T PLN02503 262 LFLQVSTAY 270 (605)
T ss_pred eEEEccCce
Confidence 788888854
|
|
| >KOG0747|consensus | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.5e-08 Score=88.62 Aligned_cols=168 Identities=14% Similarity=0.062 Sum_probs=115.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHC--CCEEEEEecChhHH-HHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKR--GARVIMACRSLEKA-ETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~--G~~Vil~~R~~~~l-~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
.+.++||||.|.||...+..+... .++.+.++.-.=-. .+..+++. ...+..++..|+.++..+.-++..
T Consensus 6 ~~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~~~~l~~~~-------n~p~ykfv~~di~~~~~~~~~~~~ 78 (331)
T KOG0747|consen 6 EKNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSNLKNLEPVR-------NSPNYKFVEGDIADADLVLYLFET 78 (331)
T ss_pred cceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccccchhhhhc-------cCCCceEeeccccchHHHHhhhcc
Confidence 489999999999999999999976 45665554421000 11222222 466889999999998876665532
Q ss_pred HHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccc
Q psy13409 93 ILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDIN 172 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~ 172 (330)
..+|.+||-|+..... .+.-+-......|+++...++....-.. +-.++|++|+-. .+|.....+.+-
T Consensus 79 -----~~id~vihfaa~t~vd--~s~~~~~~~~~nnil~t~~Lle~~~~sg---~i~~fvhvSTde-VYGds~~~~~~~- 146 (331)
T KOG0747|consen 79 -----EEIDTVIHFAAQTHVD--RSFGDSFEFTKNNILSTHVLLEAVRVSG---NIRRFVHVSTDE-VYGDSDEDAVVG- 146 (331)
T ss_pred -----CchhhhhhhHhhhhhh--hhcCchHHHhcCCchhhhhHHHHHHhcc---CeeEEEEecccc-eecCcccccccc-
Confidence 4799999999865422 2223334567789999888877765432 236889999864 555433222111
Q ss_pred cccCCCcchhhHHhHHHHHHHHHHHHHHhc
Q psy13409 173 LEKGYSATGAYGRSKLANILFTTELAKRLQ 202 (330)
Q Consensus 173 ~~~~~~~~~~Y~asK~a~~~~~~~la~~~~ 202 (330)
....+-+...|+++|+|.+++++++...++
T Consensus 147 E~s~~nPtnpyAasKaAaE~~v~Sy~~sy~ 176 (331)
T KOG0747|consen 147 EASLLNPTNPYAASKAAAEMLVRSYGRSYG 176 (331)
T ss_pred ccccCCCCCchHHHHHHHHHHHHHHhhccC
Confidence 333456778999999999999999999998
|
|
| >COG4982 3-oxoacyl-[acyl-carrier protein] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2e-06 Score=86.31 Aligned_cols=174 Identities=19% Similarity=0.177 Sum_probs=111.3
Q ss_pred CCCCCCCCEEEEEcCC-CchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhccc-CCCCeEEEEEccCCCHHHHH
Q psy13409 10 ADTRLDGKTAIVTGSN-TGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDV-KDAGEVVIRQLDLSSLKSVR 87 (330)
Q Consensus 10 ~~~~~~gk~aLITGas-~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~-~~~~~v~~i~~Dls~~~si~ 87 (330)
...+..++++|||||+ +.||.+++..|+..|++||++..+.+. +..+..+..|... -.+..+.++..+..+..+|+
T Consensus 390 ~~~~y~d~valVTGA~~gSIaa~Vv~~LL~gGAtVI~TTS~~s~--~r~efyr~LYa~~a~~ga~LwvVpaN~~SysDVd 467 (866)
T COG4982 390 NGGTYGDKVALVTGASKGSIAAAVVARLLAGGATVIATTSRLSE--ERTEFYRSLYARHARYGAALWVVPANMGSYSDVD 467 (866)
T ss_pred CCCCcccceEEEecCCCcchHHHHHHHHHhCCcEEEEEcccccH--HHHHHHHHHHHhhCCCCceEEEEeccccchhhHH
Confidence 4456789999999987 789999999999999999998776542 2223333333221 25788999999999999999
Q ss_pred HHHHHHHhcCC--------------CeeEEEEcCCCCCCCCCCChhhH--HHhHHHHHHHHHHHHHHHHHHHhhhC---C
Q psy13409 88 KCAQEILDNES--------------AIHLLINNAGVMMCPRQLTEDGY--ELQFATNHLGHYLFTLLLLPRIIKSA---P 148 (330)
Q Consensus 88 ~l~~~i~~~~g--------------~iDvlInnAG~~~~~~~~~~~~~--~~~l~vN~~g~~~l~~~~l~~l~~~~---~ 148 (330)
++++.+-+.-. .++.+|--|++.... ++...+- +..+++-+++...++-.+.++-..++ .
T Consensus 468 AlIewIg~eq~~t~g~~s~~~k~a~~ptll~PFAAp~v~G-~l~~agsraE~~~rilLw~V~Rliggl~~~~s~r~v~~R 546 (866)
T COG4982 468 ALIEWIGDEQTETVGPQSIHIKLAWTPTLLFPFAAPRVSG-ELADAGSRAEFAMRILLWNVLRLIGGLKKQGSSRGVDTR 546 (866)
T ss_pred HHHHHhccccccccCCcceecccccCcceeeecccCCccC-ccccCCchHHHHHHHHHHHHHHHHHHhhhhccccCcccc
Confidence 99999965321 256666666554322 2211111 22344555554444333333222221 1
Q ss_pred CeEEEEcCCC-cccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhc
Q psy13409 149 ARIINLSSLA-HTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQ 202 (330)
Q Consensus 149 g~IV~iSS~~-~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~ 202 (330)
-++|.-.|.. |+ +.+-++|+-+|++++.++.-+..|-.
T Consensus 547 ~hVVLPgSPNrG~----------------FGgDGaYgEsK~aldav~~RW~sEs~ 585 (866)
T COG4982 547 LHVVLPGSPNRGM----------------FGGDGAYGESKLALDAVVNRWHSESS 585 (866)
T ss_pred eEEEecCCCCCCc----------------cCCCcchhhHHHHHHHHHHHhhccch
Confidence 2355555543 22 34677899999999999887776643
|
|
| >KOG1431|consensus | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.4e-07 Score=80.63 Aligned_cols=213 Identities=14% Similarity=0.074 Sum_probs=128.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCC---EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGA---RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~---~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
++++|||++|-+|.+|.+.+..+|. +.++.+. -.+|+++..+.++++...
T Consensus 2 ~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~s---------------------------kd~DLt~~a~t~~lF~~e 54 (315)
T KOG1431|consen 2 KKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIGS---------------------------KDADLTNLADTRALFESE 54 (315)
T ss_pred ceEEEecCCchHHHHHHHHHHhcCCCCcceEEecc---------------------------ccccccchHHHHHHHhcc
Confidence 6899999999999999999998875 2333221 247999999999998865
Q ss_pred HhcCCCeeEEEEcCCCCCCC---CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 94 LDNESAIHLLINNAGVMMCP---RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~~---~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
++-.+|+.|+...-. ..-+.+-|. .|+.-.-++++.+.. .+..++|+..|.. +++...++ |
T Consensus 55 -----kPthVIhlAAmVGGlf~N~~ynldF~r----~Nl~indNVlhsa~e----~gv~K~vsclStC-IfPdkt~y--P 118 (315)
T KOG1431|consen 55 -----KPTHVIHLAAMVGGLFHNNTYNLDFIR----KNLQINDNVLHSAHE----HGVKKVVSCLSTC-IFPDKTSY--P 118 (315)
T ss_pred -----CCceeeehHhhhcchhhcCCCchHHHh----hcceechhHHHHHHH----hchhhhhhhccee-ecCCCCCC--C
Confidence 677888988765432 222333333 333332333343333 2223444444433 34432222 2
Q ss_pred ccc---c--cCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccc
Q psy13409 171 INL---E--KGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCK 245 (330)
Q Consensus 171 ~~~---~--~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (330)
+++ . .+.+..-.|+.+|-.+.-..+.+..+.+ |+.--+-|||-||-
T Consensus 119 IdEtmvh~gpphpsN~gYsyAKr~idv~n~aY~~qhg-----------------------------~~~tsviPtNvfGp 169 (315)
T KOG1431|consen 119 IDETMVHNGPPHPSNFGYSYAKRMIDVQNQAYRQQHG-----------------------------RDYTSVIPTNVFGP 169 (315)
T ss_pred CCHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHhC-----------------------------CceeeeccccccCC
Confidence 332 1 1234555899999888888899999988 78888899999999
Q ss_pred ccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhh
Q psy13409 246 NVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCA 310 (330)
Q Consensus 246 ~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~ 310 (330)
+-+|+|.. . -|.||.|.---...........-|- ...+.+++.-.+|.|++.+|++
T Consensus 170 hDNfnpe~---s-----HVlPali~r~h~ak~~gtd~~~VwG-sG~PlRqFiys~DLA~l~i~vl 225 (315)
T KOG1431|consen 170 HDNFNPEN---S-----HVLPALIHRFHEAKRNGTDELTVWG-SGSPLRQFIYSDDLADLFIWVL 225 (315)
T ss_pred CCCCCccc---c-----cchHHHHHHHHHHHhcCCceEEEec-CCChHHHHhhHhHHHHHHHHHH
Confidence 99999885 3 3788876211000000000000110 1122223566777777777776
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.2e-07 Score=94.61 Aligned_cols=103 Identities=17% Similarity=0.122 Sum_probs=75.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhcC
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNE 97 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~~ 97 (330)
++|||||+|.||.+++++|+++|++|++++|+.... ....+.++.+|+++.. +.+++
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~~---------------~~~~ve~v~~Dl~d~~-l~~al------- 58 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHDA---------------LDPRVDYVCASLRNPV-LQELA------- 58 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhhc---------------ccCCceEEEccCCCHH-HHHHh-------
Confidence 699999999999999999999999999999875321 1235778999999873 33332
Q ss_pred CCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCC
Q psy13409 98 SAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLA 158 (330)
Q Consensus 98 g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~ 158 (330)
..+|++||+|+.... . ...+|+.+..++++++ .+.+ .++|++||..
T Consensus 59 ~~~D~VIHLAa~~~~------~----~~~vNv~Gt~nLleAA----~~~G-vRiV~~SS~~ 104 (699)
T PRK12320 59 GEADAVIHLAPVDTS------A----PGGVGITGLAHVANAA----ARAG-ARLLFVSQAA 104 (699)
T ss_pred cCCCEEEEcCccCcc------c----hhhHHHHHHHHHHHHH----HHcC-CeEEEEECCC
Confidence 247999999986421 1 1247888877776665 3333 4899999863
|
|
| >PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.8e-07 Score=90.44 Aligned_cols=79 Identities=20% Similarity=0.327 Sum_probs=62.1
Q ss_pred CCCCCEEEEEcC----------------CCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEE
Q psy13409 13 RLDGKTAIVTGS----------------NTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76 (330)
Q Consensus 13 ~~~gk~aLITGa----------------s~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i 76 (330)
+++||++||||| +|++|+++|++|++.|++|++++++.+ +. .... ..
T Consensus 185 ~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~-~~--------------~~~~--~~ 247 (399)
T PRK05579 185 DLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVN-LP--------------TPAG--VK 247 (399)
T ss_pred ccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCcc-cc--------------CCCC--cE
Confidence 589999999999 555999999999999999999998752 11 0111 34
Q ss_pred EccCCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCC
Q psy13409 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMM 111 (330)
Q Consensus 77 ~~Dls~~~si~~l~~~i~~~~g~iDvlInnAG~~~ 111 (330)
.+|+++.+++.+.+. +.++.+|++|||||+..
T Consensus 248 ~~dv~~~~~~~~~v~---~~~~~~DilI~~Aav~d 279 (399)
T PRK05579 248 RIDVESAQEMLDAVL---AALPQADIFIMAAAVAD 279 (399)
T ss_pred EEccCCHHHHHHHHH---HhcCCCCEEEEcccccc
Confidence 679999888766655 45778999999999864
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.8e-07 Score=84.63 Aligned_cols=86 Identities=23% Similarity=0.324 Sum_probs=65.9
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCE-EEEEecCh---hHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGAR-VIMACRSL---EKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRK 88 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~-Vil~~R~~---~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~ 88 (330)
++++|+++|+|| ||+|++++..|++.|++ |++++|+. ++++++.+++.+. ...+.+..+|+++.++++.
T Consensus 123 ~~~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~------~~~~~~~~~d~~~~~~~~~ 195 (289)
T PRK12548 123 DVKGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQE------VPECIVNVYDLNDTEKLKA 195 (289)
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhc------CCCceeEEechhhhhHHHh
Confidence 578999999999 69999999999999995 99999997 6666666666442 2344556788887766655
Q ss_pred HHHHHHhcCCCeeEEEEcCCCCCC
Q psy13409 89 CAQEILDNESAIHLLINNAGVMMC 112 (330)
Q Consensus 89 l~~~i~~~~g~iDvlInnAG~~~~ 112 (330)
.++ ..|+||||......
T Consensus 196 ~~~-------~~DilINaTp~Gm~ 212 (289)
T PRK12548 196 EIA-------SSDILVNATLVGMK 212 (289)
T ss_pred hhc-------cCCEEEEeCCCCCC
Confidence 443 34999999876543
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.5e-06 Score=76.72 Aligned_cols=85 Identities=28% Similarity=0.411 Sum_probs=67.3
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
.++++++++|+||+|++|+.+++.|+++|++|++++|+.+++++..+.+.+.. ......+|+.+.+++...++
T Consensus 24 ~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~ 96 (194)
T cd01078 24 KDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARF-------GEGVGAVETSDDAARAAAIK 96 (194)
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhc-------CCcEEEeeCCCHHHHHHHHh
Confidence 46899999999999999999999999999999999999988888777665331 23345678888877766654
Q ss_pred HHHhcCCCeeEEEEcCCCC
Q psy13409 92 EILDNESAIHLLINNAGVM 110 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~ 110 (330)
..|++|++....
T Consensus 97 -------~~diVi~at~~g 108 (194)
T cd01078 97 -------GADVVFAAGAAG 108 (194)
T ss_pred -------cCCEEEECCCCC
Confidence 358888876544
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >KOG2865|consensus | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.3e-06 Score=79.06 Aligned_cols=166 Identities=23% Similarity=0.264 Sum_probs=114.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
+++|-++-|.||||.+|+.++.+|++.|.+|++-.|-.+..-.-.+-+ ..-+++.++..|+.|++||.++++.
T Consensus 58 S~sGiVaTVFGAtGFlGryvvnklak~GSQviiPyR~d~~~~r~lkvm-------GdLGQvl~~~fd~~DedSIr~vvk~ 130 (391)
T KOG2865|consen 58 SVSGIVATVFGATGFLGRYVVNKLAKMGSQVIIPYRGDEYDPRHLKVM-------GDLGQVLFMKFDLRDEDSIRAVVKH 130 (391)
T ss_pred cccceEEEEecccccccHHHHHHHhhcCCeEEEeccCCccchhheeec-------ccccceeeeccCCCCHHHHHHHHHh
Confidence 578899999999999999999999999999999999765322222111 1246899999999999999999886
Q ss_pred HHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccc
Q psy13409 93 ILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDIN 172 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~ 172 (330)
- +++||..|.-.+....+ .-++|+.++-.+.+.+ ++.+--++|.+|+..+-.
T Consensus 131 s-------NVVINLIGrd~eTknf~------f~Dvn~~~aerlAric----ke~GVerfIhvS~Lganv----------- 182 (391)
T KOG2865|consen 131 S-------NVVINLIGRDYETKNFS------FEDVNVHIAERLARIC----KEAGVERFIHVSCLGANV----------- 182 (391)
T ss_pred C-------cEEEEeeccccccCCcc------cccccchHHHHHHHHH----HhhChhheeehhhccccc-----------
Confidence 4 89999999654333332 2346667755544443 334446899999976432
Q ss_pred cccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccch
Q psy13409 173 LEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSN 226 (330)
Q Consensus 173 ~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (330)
...+-|--+|++-+--++..=-|.- ---|..+.|+-|||-+
T Consensus 183 -----~s~Sr~LrsK~~gE~aVrdafPeAt--------IirPa~iyG~eDrfln 223 (391)
T KOG2865|consen 183 -----KSPSRMLRSKAAGEEAVRDAFPEAT--------IIRPADIYGTEDRFLN 223 (391)
T ss_pred -----cChHHHHHhhhhhHHHHHhhCCcce--------eechhhhcccchhHHH
Confidence 3445677788887766665433222 1236667777777543
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=98.34 E-value=4e-06 Score=75.79 Aligned_cols=75 Identities=15% Similarity=0.200 Sum_probs=57.6
Q ss_pred EEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhcCC
Q psy13409 19 AIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNES 98 (330)
Q Consensus 19 aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~~g 98 (330)
|+|+||+|.+|+.+++.|++.+++|.++.|+.+. ...+.++.. .+.++.+|+.|.+++.+.++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~--~~~~~l~~~--------g~~vv~~d~~~~~~l~~al~------- 63 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSS--DRAQQLQAL--------GAEVVEADYDDPESLVAALK------- 63 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHH--HHHHHHHHT--------TTEEEES-TT-HHHHHHHHT-------
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccch--hhhhhhhcc--------cceEeecccCCHHHHHHHHc-------
Confidence 6899999999999999999999999999999742 223334331 23567999999998888776
Q ss_pred CeeEEEEcCCCC
Q psy13409 99 AIHLLINNAGVM 110 (330)
Q Consensus 99 ~iDvlInnAG~~ 110 (330)
.+|.+|++.+..
T Consensus 64 g~d~v~~~~~~~ 75 (233)
T PF05368_consen 64 GVDAVFSVTPPS 75 (233)
T ss_dssp TCSEEEEESSCS
T ss_pred CCceEEeecCcc
Confidence 469999888755
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >KOG1372|consensus | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.2e-06 Score=79.44 Aligned_cols=170 Identities=15% Similarity=0.095 Sum_probs=112.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhccc--CCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDV--KDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~--~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
..|++||||-+|-=|..++..|+.+|+.|..+-|..+..+.. .++-.+... ..++....+-.|++|..++.+++..
T Consensus 27 ~rkvALITGItGQDGSYLaEfLL~KgYeVHGiiRRsSsFNT~--RIeHlY~nP~~h~~~~mkLHYgDmTDss~L~k~I~~ 104 (376)
T KOG1372|consen 27 PRKVALITGITGQDGSYLAEFLLSKGYEVHGIIRRSSSFNTA--RIEHLYSNPHTHNGASMKLHYGDMTDSSCLIKLIST 104 (376)
T ss_pred cceEEEEecccCCCchHHHHHHHhCCceeeEEEeeccccchh--hhhhhhcCchhcccceeEEeeccccchHHHHHHHhc
Confidence 346999999999999999999999999999988866544332 122222221 2357778888999999998888876
Q ss_pred HHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccc
Q psy13409 93 ILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDIN 172 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~ 172 (330)
+ .++-+.|.|+.+... .+.+-.+.+-++...|.+.++.++-..-... +.=.+-.|.+..+|-. ..-|-+
T Consensus 105 i-----kPtEiYnLaAQSHVk--vSFdlpeYTAeVdavGtLRlLdAi~~c~l~~--~VrfYQAstSElyGkv--~e~PQs 173 (376)
T KOG1372|consen 105 I-----KPTEVYNLAAQSHVK--VSFDLPEYTAEVDAVGTLRLLDAIRACRLTE--KVRFYQASTSELYGKV--QEIPQS 173 (376)
T ss_pred c-----CchhhhhhhhhcceE--EEeecccceeeccchhhhhHHHHHHhcCccc--ceeEEecccHhhcccc--cCCCcc
Confidence 6 567777778765432 2233335556678889888877765543332 3334555666666621 112223
Q ss_pred cccCCCcchhhHHhHHHHHHHHHHH
Q psy13409 173 LEKGYSATGAYGRSKLANILFTTEL 197 (330)
Q Consensus 173 ~~~~~~~~~~Y~asK~a~~~~~~~l 197 (330)
...|+.+.++|+++|..-.-.+-.+
T Consensus 174 E~TPFyPRSPYa~aKmy~~WivvNy 198 (376)
T KOG1372|consen 174 ETTPFYPRSPYAAAKMYGYWIVVNY 198 (376)
T ss_pred cCCCCCCCChhHHhhhhheEEEEEh
Confidence 3446678899999998855433333
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.2e-05 Score=70.83 Aligned_cols=136 Identities=22% Similarity=0.135 Sum_probs=92.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
+++|||||||.+|.+++++|+++|+.|++..|+.+++.... ..+.+...|+.+..++...++.
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~-------------~~v~~~~~d~~~~~~l~~a~~G---- 63 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA-------------GGVEVVLGDLRDPKSLVAGAKG---- 63 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc-------------CCcEEEEeccCCHhHHHHHhcc----
Confidence 47999999999999999999999999999999998766542 4678899999999988777653
Q ss_pred CCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccccC
Q psy13409 97 ESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKG 176 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~ 176 (330)
.|.+++..+... ... . .............+... .+..+++.+|+..+..
T Consensus 64 ---~~~~~~i~~~~~-~~~-~------~~~~~~~~~~~~a~~a~-----~~~~~~~~~s~~~~~~--------------- 112 (275)
T COG0702 64 ---VDGVLLISGLLD-GSD-A------FRAVQVTAVVRAAEAAG-----AGVKHGVSLSVLGADA--------------- 112 (275)
T ss_pred ---ccEEEEEecccc-ccc-c------hhHHHHHHHHHHHHHhc-----CCceEEEEeccCCCCC---------------
Confidence 477777776543 211 1 11122222222222221 2235667676654321
Q ss_pred CCcchhhHHhHHHHHHHHHHHHHHh
Q psy13409 177 YSATGAYGRSKLANILFTTELAKRL 201 (330)
Q Consensus 177 ~~~~~~Y~asK~a~~~~~~~la~~~ 201 (330)
.....|..+|...+...++....+
T Consensus 113 -~~~~~~~~~~~~~e~~l~~sg~~~ 136 (275)
T COG0702 113 -ASPSALARAKAAVEAALRSSGIPY 136 (275)
T ss_pred -CCccHHHHHHHHHHHHHHhcCCCe
Confidence 245679999999888888776553
|
|
| >TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.9e-06 Score=82.15 Aligned_cols=79 Identities=22% Similarity=0.396 Sum_probs=61.4
Q ss_pred CCCCCEEEEEcC---------------CCc-hHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEE
Q psy13409 13 RLDGKTAIVTGS---------------NTG-IGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76 (330)
Q Consensus 13 ~~~gk~aLITGa---------------s~g-IG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i 76 (330)
+++||++||||| |+| +|.+++++|...|++|++++++.... .... ..
T Consensus 182 ~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~~---------------~~~~--~~ 244 (390)
T TIGR00521 182 DLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVSLL---------------TPPG--VK 244 (390)
T ss_pred ccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCccC---------------CCCC--cE
Confidence 589999999999 566 99999999999999999988765320 1112 25
Q ss_pred EccCCCHHHH-HHHHHHHHhcCCCeeEEEEcCCCCC
Q psy13409 77 QLDLSSLKSV-RKCAQEILDNESAIHLLINNAGVMM 111 (330)
Q Consensus 77 ~~Dls~~~si-~~l~~~i~~~~g~iDvlInnAG~~~ 111 (330)
.+|+++.+++ ++++++. .+.+|++|+|||+..
T Consensus 245 ~~~v~~~~~~~~~~~~~~---~~~~D~~i~~Aavsd 277 (390)
T TIGR00521 245 SIKVSTAEEMLEAALNEL---AKDFDIFISAAAVAD 277 (390)
T ss_pred EEEeccHHHHHHHHHHhh---cccCCEEEEcccccc
Confidence 6799998888 5555443 467899999999874
|
This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity. |
| >KOG1221|consensus | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.6e-05 Score=77.34 Aligned_cols=135 Identities=16% Similarity=0.216 Sum_probs=90.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCC--C-EEEEEecChh---HHHHHHHHH--------HHhhcccCCCCeEEEEEcc
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRG--A-RVIMACRSLE---KAETAADDI--------RTSLKDVKDAGEVVIRQLD 79 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G--~-~Vil~~R~~~---~l~~~~~~l--------~~~~~~~~~~~~v~~i~~D 79 (330)
++||+++||||+|++|.-+++.|++.- . +|++.-|... .-+++...+ .+... ..-.++..+.+|
T Consensus 10 ~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p--~~l~Kv~pi~GD 87 (467)
T KOG1221|consen 10 YKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKP--EALEKVVPIAGD 87 (467)
T ss_pred hCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCc--cceecceecccc
Confidence 689999999999999999999999763 2 6788777532 112222211 11111 134788999999
Q ss_pred CCCHHH-HHHHHHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCC
Q psy13409 80 LSSLKS-VRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLA 158 (330)
Q Consensus 80 ls~~~s-i~~l~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~ 158 (330)
+++++- +...-.+ .....+|++||+|+...- .+.++..+.+|..|+.++++.+..+..- ...|.+|+.-
T Consensus 88 i~~~~LGis~~D~~--~l~~eV~ivih~AAtvrF-----de~l~~al~iNt~Gt~~~l~lak~~~~l---~~~vhVSTAy 157 (467)
T KOG1221|consen 88 ISEPDLGISESDLR--TLADEVNIVIHSAATVRF-----DEPLDVALGINTRGTRNVLQLAKEMVKL---KALVHVSTAY 157 (467)
T ss_pred ccCcccCCChHHHH--HHHhcCCEEEEeeeeecc-----chhhhhhhhhhhHhHHHHHHHHHHhhhh---heEEEeehhh
Confidence 987642 1111111 112357999999997642 2455678899999999998888776543 5788888865
Q ss_pred cc
Q psy13409 159 HT 160 (330)
Q Consensus 159 ~~ 160 (330)
..
T Consensus 158 ~n 159 (467)
T KOG1221|consen 158 SN 159 (467)
T ss_pred ee
Confidence 44
|
|
| >KOG1203|consensus | Back alignment and domain information |
|---|
Probab=98.15 E-value=7.9e-05 Score=72.86 Aligned_cols=134 Identities=17% Similarity=0.121 Sum_probs=86.5
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHH-HH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVR-KC 89 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~-~l 89 (330)
....+-.+|+|+||+|++|+-+++.|.+.|+.|.++.|+.++..+..... . .......+..|...+.++. .+
T Consensus 74 ~~~~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~~~-~------~d~~~~~v~~~~~~~~d~~~~~ 146 (411)
T KOG1203|consen 74 NNSKKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLGVF-F------VDLGLQNVEADVVTAIDILKKL 146 (411)
T ss_pred CCCCCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhccc-c------cccccceeeeccccccchhhhh
Confidence 34567889999999999999999999999999999999988776665410 0 1233444555555544332 22
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCC
Q psy13409 90 AQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGD 163 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~ 163 (330)
+..+ --...+++.++|.....+ +......+.+.|..+++.++ ...+-.++|++||+.+....
T Consensus 147 ~~~~---~~~~~~v~~~~ggrp~~e-----d~~~p~~VD~~g~knlvdA~----~~aGvk~~vlv~si~~~~~~ 208 (411)
T KOG1203|consen 147 VEAV---PKGVVIVIKGAGGRPEEE-----DIVTPEKVDYEGTKNLVDAC----KKAGVKRVVLVGSIGGTKFN 208 (411)
T ss_pred hhhc---cccceeEEecccCCCCcc-----cCCCcceecHHHHHHHHHHH----HHhCCceEEEEEeecCcccC
Confidence 2221 112346666666553221 23333446777877777776 33455799999998765543
|
|
| >KOG1202|consensus | Back alignment and domain information |
|---|
Probab=98.13 E-value=9.5e-06 Score=86.27 Aligned_cols=161 Identities=17% Similarity=0.156 Sum_probs=127.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhH---HHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEK---AETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~---l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
..|..+|+||-||.|++++..|.++|+ .++++.|+--+ -....+.+++ .+.+|.+-..|++..+....++
T Consensus 1767 peksYii~GGLGGFGLELaqWLi~RGar~lVLtSRsGirtGYQa~~vrrWr~------~GVqV~vsT~nitt~~ga~~Li 1840 (2376)
T KOG1202|consen 1767 PEKSYIIVGGLGGFGLELAQWLIQRGARKLVLTSRSGIRTGYQALMVRRWRR------RGVQVQVSTSNITTAEGARGLI 1840 (2376)
T ss_pred ccceEEEeccccchhHHHHHHHHhcCceEEEEeccccchhhHHHHHHHHHHh------cCeEEEEecccchhhhhHHHHH
Confidence 578999999999999999999999999 58999997533 2334455555 3778888888999988888888
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 91 QEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
++.. ..+.+-.++|.|.+.... ++.+.++|++.-+..+.+++++-+.--+..-. -..+|.+||++--+|+
T Consensus 1841 ~~s~-kl~~vGGiFnLA~VLRD~LiEnQt~knFk~va~pK~~~Ti~LD~~sRe~C~~--LdyFv~FSSvscGRGN----- 1912 (2376)
T KOG1202|consen 1841 EESN-KLGPVGGIFNLAAVLRDGLIENQTPKNFKDVAKPKYSGTINLDRVSREICPE--LDYFVVFSSVSCGRGN----- 1912 (2376)
T ss_pred HHhh-hcccccchhhHHHHHHhhhhcccChhHHHhhhccceeeeeehhhhhhhhCcc--cceEEEEEeecccCCC-----
Confidence 7653 457888999999877643 78899999999999999999887665444322 2578889998877776
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHH
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELA 198 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la 198 (330)
.+...|+-+.++++.+|..-.
T Consensus 1913 ---------~GQtNYG~aNS~MERiceqRr 1933 (2376)
T KOG1202|consen 1913 ---------AGQTNYGLANSAMERICEQRR 1933 (2376)
T ss_pred ---------CcccccchhhHHHHHHHHHhh
Confidence 788899999999999997543
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00013 Score=63.65 Aligned_cols=121 Identities=20% Similarity=0.183 Sum_probs=86.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
+++.|.||||-+|..|+++...+|+.|+++.||++++... ..+..++.|+.|++++.+.+.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~--------------~~~~i~q~Difd~~~~a~~l~----- 61 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR--------------QGVTILQKDIFDLTSLASDLA----- 61 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc--------------ccceeecccccChhhhHhhhc-----
Confidence 4688999999999999999999999999999999875331 356788999999887654443
Q ss_pred CCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccc
Q psy13409 97 ESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDIN 172 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~ 172 (330)
..|++|..-|...+. .+ .... .. .+++...+...+..|++.++...+..-.++....+.+
T Consensus 62 --g~DaVIsA~~~~~~~----~~--~~~~----k~----~~~li~~l~~agv~RllVVGGAGSL~id~g~rLvD~p 121 (211)
T COG2910 62 --GHDAVISAFGAGASD----ND--ELHS----KS----IEALIEALKGAGVPRLLVVGGAGSLEIDEGTRLVDTP 121 (211)
T ss_pred --CCceEEEeccCCCCC----hh--HHHH----HH----HHHHHHHHhhcCCeeEEEEcCccceEEcCCceeecCC
Confidence 459999988876321 11 1110 11 4555555555577899999988877766554444443
|
|
| >PRK06732 phosphopantothenate--cysteine ligase; Validated | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.3e-05 Score=72.95 Aligned_cols=97 Identities=12% Similarity=0.078 Sum_probs=63.5
Q ss_pred CEEEEEcCC-CchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 17 KTAIVTGSN-TGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 17 k~aLITGas-~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
.+-.||+.| |+||+++|++|+++|++|++++|..... .. ...++.++.++ +.+.+.+.+.+
T Consensus 16 ~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~~~~~--------~~-----~~~~v~~i~v~-----s~~~m~~~l~~ 77 (229)
T PRK06732 16 SVRGITNHSTGQLGKIIAETFLAAGHEVTLVTTKTAVK--------PE-----PHPNLSIIEIE-----NVDDLLETLEP 77 (229)
T ss_pred CceeecCccchHHHHHHHHHHHhCCCEEEEEECccccc--------CC-----CCCCeEEEEEe-----cHHHHHHHHHH
Confidence 466778755 4599999999999999999998764210 00 12244555432 23333344444
Q ss_pred cCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHH
Q psy13409 96 NESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLG 131 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g 131 (330)
.++.+|++|||||.... ....+.+++..++++|.+.
T Consensus 78 ~~~~~DivIh~AAvsd~~~~~~~~~~~~~~~~~v~~~~ 115 (229)
T PRK06732 78 LVKDHDVLIHSMAVSDYTPVYMTDLEEVSASDNLNEFL 115 (229)
T ss_pred HhcCCCEEEeCCccCCceehhhhhhhhhhhhhhhhhhh
Confidence 45578999999998752 2455677788877776655
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.3e-05 Score=73.07 Aligned_cols=165 Identities=16% Similarity=0.102 Sum_probs=103.4
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCC--EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGA--RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
.--..++|+|+|++|.||..++..|+.++. .+++++++.. ....-++... .... ...++++.+++...
T Consensus 14 ~~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~--~g~a~Dl~~~------~~~~--~i~~~~~~~d~~~~ 83 (323)
T PLN00106 14 GGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANT--PGVAADVSHI------NTPA--QVRGFLGDDQLGDA 83 (323)
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCC--CeeEchhhhC------CcCc--eEEEEeCCCCHHHH
Confidence 334557999999999999999999998775 7999999872 1111122211 1111 22243333333333
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 90 AQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
+ ...|++|+.||....+ ...+++.+..|+.. ++.+.+.+.+.+...||+++|-...... ..-..
T Consensus 84 l-------~~aDiVVitAG~~~~~----g~~R~dll~~N~~i----~~~i~~~i~~~~p~aivivvSNPvD~~~-~i~t~ 147 (323)
T PLN00106 84 L-------KGADLVIIPAGVPRKP----GMTRDDLFNINAGI----VKTLCEAVAKHCPNALVNIISNPVNSTV-PIAAE 147 (323)
T ss_pred c-------CCCCEEEEeCCCCCCC----CCCHHHHHHHHHHH----HHHHHHHHHHHCCCeEEEEeCCCccccH-HHHHH
Confidence 2 3569999999986542 23456677777777 6666666777776777777774321000 00000
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQ 202 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~ 202 (330)
.+....+++....|+.++.-...|.+.+|.+++
T Consensus 148 ~~~~~s~~p~~~viG~~~LDs~Rl~~~lA~~lg 180 (323)
T PLN00106 148 VLKKAGVYDPKKLFGVTTLDVVRANTFVAEKKG 180 (323)
T ss_pred HHHHcCCCCcceEEEEecchHHHHHHHHHHHhC
Confidence 112334556777899998777889999999988
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.2e-05 Score=75.29 Aligned_cols=77 Identities=31% Similarity=0.452 Sum_probs=65.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCC-CEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRG-ARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G-~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
+.+||.|+ |+||+.+|..|+++| .+|++++|+.++..++.... ..++.++++|+.+.+++.+++++.
T Consensus 2 ~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~---------~~~v~~~~vD~~d~~al~~li~~~-- 69 (389)
T COG1748 2 MKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI---------GGKVEALQVDAADVDALVALIKDF-- 69 (389)
T ss_pred CcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc---------cccceeEEecccChHHHHHHHhcC--
Confidence 67899999 999999999999999 79999999998887776543 448899999999988887777642
Q ss_pred cCCCeeEEEEcCCCC
Q psy13409 96 NESAIHLLINNAGVM 110 (330)
Q Consensus 96 ~~g~iDvlInnAG~~ 110 (330)
|++||++...
T Consensus 70 -----d~VIn~~p~~ 79 (389)
T COG1748 70 -----DLVINAAPPF 79 (389)
T ss_pred -----CEEEEeCCch
Confidence 9999999754
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.4e-05 Score=64.43 Aligned_cols=79 Identities=27% Similarity=0.395 Sum_probs=59.7
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCE-EEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGAR-VIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~-Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
++++++++|.|+ ||.|++++..|...|++ |+++.|+.++++++.+.+. +..+.++.. .+ +.....
T Consensus 9 ~l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~--------~~~~~~~~~--~~---~~~~~~ 74 (135)
T PF01488_consen 9 DLKGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERAEALAEEFG--------GVNIEAIPL--ED---LEEALQ 74 (135)
T ss_dssp TGTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHT--------GCSEEEEEG--GG---HCHHHH
T ss_pred CcCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcC--------ccccceeeH--HH---HHHHHh
Confidence 689999999998 99999999999999985 9999999999888887772 233444433 22 222222
Q ss_pred HHHhcCCCeeEEEEcCCCCCC
Q psy13409 92 EILDNESAIHLLINNAGVMMC 112 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~ 112 (330)
..|++|++.+...+
T Consensus 75 -------~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 75 -------EADIVINATPSGMP 88 (135)
T ss_dssp -------TESEEEE-SSTTST
T ss_pred -------hCCeEEEecCCCCc
Confidence 46999999987653
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=4.2e-05 Score=73.10 Aligned_cols=163 Identities=19% Similarity=0.121 Sum_probs=100.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCC--CEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRG--ARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G--~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
++.++++|+|++|.||..++..|+..+ ..++++++.. +....-++... .. .....+.++..++.+.+
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~--~~g~a~Dl~~~------~~--~~~v~~~td~~~~~~~l- 74 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVG--APGVAADLSHI------DT--PAKVTGYADGELWEKAL- 74 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCC--Ccccccchhhc------Cc--CceEEEecCCCchHHHh-
Confidence 567799999999999999999999666 4799999932 21112222221 11 12334555543322222
Q ss_pred HHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccc
Q psy13409 92 EILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDI 171 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~ 171 (330)
...|++|+++|....+ ..++.+.+..|+.. ++.+.+.|.+.+..++|+++|.....-. +...+.+
T Consensus 75 ------~gaDvVVitaG~~~~~----~~tR~dll~~N~~i----~~~i~~~i~~~~~~~iviv~SNPvdv~~-~~~~~~~ 139 (321)
T PTZ00325 75 ------RGADLVLICAGVPRKP----GMTRDDLFNTNAPI----VRDLVAAVASSAPKAIVGIVSNPVNSTV-PIAAETL 139 (321)
T ss_pred ------CCCCEEEECCCCCCCC----CCCHHHHHHHHHHH----HHHHHHHHHHHCCCeEEEEecCcHHHHH-HHHHhhh
Confidence 2469999999985432 23456677788877 7777777777777888888884422111 0000111
Q ss_pred ccccCCCcchhhHHhHHHHHHHHHHHHHHhc
Q psy13409 172 NLEKGYSATGAYGRSKLANILFTTELAKRLQ 202 (330)
Q Consensus 172 ~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~ 202 (330)
....+++....|+.+-.=-..|.+.+|+.+.
T Consensus 140 ~~~sg~p~~~viG~g~LDs~R~r~~la~~l~ 170 (321)
T PTZ00325 140 KKAGVYDPRKLFGVTTLDVVRARKFVAEALG 170 (321)
T ss_pred hhccCCChhheeechhHHHHHHHHHHHHHhC
Confidence 2344556667788873233378888888887
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=97.89 E-value=3.7e-05 Score=75.10 Aligned_cols=76 Identities=32% Similarity=0.415 Sum_probs=59.9
Q ss_pred EEEEcCCCchHHHHHHHHHHCCC--EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 19 AIVTGSNTGIGKCTANELAKRGA--RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 19 aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
|+|.|| |.+|..+++.|++++- +|++.+|+.+++++..+.+ ...++.++.+|+.|.+++.+++++
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~--------~~~~~~~~~~d~~~~~~l~~~~~~---- 67 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL--------LGDRVEAVQVDVNDPESLAELLRG---- 67 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT----------TTTTEEEEE--TTTHHHHHHHHTT----
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc--------cccceeEEEEecCCHHHHHHHHhc----
Confidence 689999 9999999999999874 8999999999988877654 267899999999999988888654
Q ss_pred CCCeeEEEEcCCCC
Q psy13409 97 ESAIHLLINNAGVM 110 (330)
Q Consensus 97 ~g~iDvlInnAG~~ 110 (330)
.|++||++|..
T Consensus 68 ---~dvVin~~gp~ 78 (386)
T PF03435_consen 68 ---CDVVINCAGPF 78 (386)
T ss_dssp ---SSEEEE-SSGG
T ss_pred ---CCEEEECCccc
Confidence 39999999865
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >KOG2733|consensus | Back alignment and domain information |
|---|
Probab=97.85 E-value=7.6e-05 Score=71.01 Aligned_cols=85 Identities=18% Similarity=0.225 Sum_probs=72.1
Q ss_pred EEEEEcCCCchHHHHHHHHHH----CCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 18 TAIVTGSNTGIGKCTANELAK----RGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~----~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
-++|.||||.-|..+++++.+ .|..+-+.+||+.++++.++.+.+..... ....+ .+.||.+|++++.+++++.
T Consensus 7 DvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~~KL~~vL~~~~~k~~~~-ls~~~-i~i~D~~n~~Sl~emak~~ 84 (423)
T KOG2733|consen 7 DVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEKKLQEVLEKVGEKTGTD-LSSSV-ILIADSANEASLDEMAKQA 84 (423)
T ss_pred eEEEEccccccceeeHHHHhhhhcccCceEEEecCCHHHHHHHHHHHhhccCCC-cccce-EEEecCCCHHHHHHHHhhh
Confidence 478999999999999999999 78899999999999999999887654221 12344 8899999999999999876
Q ss_pred HhcCCCeeEEEEcCCCCC
Q psy13409 94 LDNESAIHLLINNAGVMM 111 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~ 111 (330)
.+++||+|...
T Consensus 85 -------~vivN~vGPyR 95 (423)
T KOG2733|consen 85 -------RVIVNCVGPYR 95 (423)
T ss_pred -------EEEEeccccce
Confidence 89999999654
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=7.9e-05 Score=74.14 Aligned_cols=78 Identities=22% Similarity=0.310 Sum_probs=58.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh-hHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL-EKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~-~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
++++|+++|+|+++ +|.++|+.|++.|++|++++++. +.+++..+++.+ ..+.++.+|..+.
T Consensus 2 ~~~~k~v~iiG~g~-~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~--------~~~~~~~~~~~~~-------- 64 (450)
T PRK14106 2 ELKGKKVLVVGAGV-SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGE--------LGIELVLGEYPEE-------- 64 (450)
T ss_pred CcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHh--------cCCEEEeCCcchh--------
Confidence 57899999999866 99999999999999999999985 334443444432 1345677787651
Q ss_pred HHHhcCCCeeEEEEcCCCCC
Q psy13409 92 EILDNESAIHLLINNAGVMM 111 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~ 111 (330)
..+.+|++|+++|...
T Consensus 65 ----~~~~~d~vv~~~g~~~ 80 (450)
T PRK14106 65 ----FLEGVDLVVVSPGVPL 80 (450)
T ss_pred ----HhhcCCEEEECCCCCC
Confidence 1246899999999753
|
|
| >PRK09620 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=2.8e-05 Score=70.85 Aligned_cols=36 Identities=33% Similarity=0.525 Sum_probs=33.0
Q ss_pred CCCCEEEEEcCC----------------CchHHHHHHHHHHCCCEEEEEecC
Q psy13409 14 LDGKTAIVTGSN----------------TGIGKCTANELAKRGARVIMACRS 49 (330)
Q Consensus 14 ~~gk~aLITGas----------------~gIG~aia~~L~~~G~~Vil~~R~ 49 (330)
|+||++|||+|. |.||.++|++|+++|+.|+++++.
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 579999999886 999999999999999999998764
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00023 Score=68.37 Aligned_cols=75 Identities=17% Similarity=0.268 Sum_probs=54.8
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHC-C-CEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKR-G-ARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~-G-~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
.++++|+++||||+|.||..++++|+++ | ..|+++.|+..++.++.+++.. .|+. +++..
T Consensus 151 ~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~---------------~~i~---~l~~~ 212 (340)
T PRK14982 151 IDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGG---------------GKIL---SLEEA 212 (340)
T ss_pred cCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhcc---------------ccHH---hHHHH
Confidence 3689999999999999999999999864 6 4899999998877766544311 1222 12222
Q ss_pred HHHHHhcCCCeeEEEEcCCCCC
Q psy13409 90 AQEILDNESAIHLLINNAGVMM 111 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~ 111 (330)
....|++|++++...
T Consensus 213 -------l~~aDiVv~~ts~~~ 227 (340)
T PRK14982 213 -------LPEADIVVWVASMPK 227 (340)
T ss_pred -------HccCCEEEECCcCCc
Confidence 235799999998754
|
|
| >KOG2774|consensus | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00011 Score=66.33 Aligned_cols=161 Identities=18% Similarity=0.134 Sum_probs=109.7
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHC-CC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKR-GA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~-G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
+-+-.++||||+-|-+|..+|+.|-.. |. +|++.+.-..... + -..--++-.|+.|.+++++.+
T Consensus 41 ~~~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KPp~~-----V---------~~~GPyIy~DILD~K~L~eIV 106 (366)
T KOG2774|consen 41 TQKAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKPPAN-----V---------TDVGPYIYLDILDQKSLEEIV 106 (366)
T ss_pred cCCCCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccCCchh-----h---------cccCCchhhhhhccccHHHhh
Confidence 446689999999999999999988754 65 6777654432111 0 111234567888877776664
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 91 QEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
- ..+||-+||-.+..... .+...--...+|+.|..++++.+.++ .--||+-|.-|.+|...+ ..|
T Consensus 107 V-----n~RIdWL~HfSALLSAv---GE~NVpLA~~VNI~GvHNil~vAa~~------kL~iFVPSTIGAFGPtSP-RNP 171 (366)
T KOG2774|consen 107 V-----NKRIDWLVHFSALLSAV---GETNVPLALQVNIRGVHNILQVAAKH------KLKVFVPSTIGAFGPTSP-RNP 171 (366)
T ss_pred c-----ccccceeeeHHHHHHHh---cccCCceeeeecchhhhHHHHHHHHc------CeeEeecccccccCCCCC-CCC
Confidence 3 24899999977644322 23333445679999977777665443 344788887777875333 355
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhc
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQ 202 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~ 202 (330)
++......+...|+.||.-.+.+.+.+..+++
T Consensus 172 TPdltIQRPRTIYGVSKVHAEL~GEy~~hrFg 203 (366)
T KOG2774|consen 172 TPDLTIQRPRTIYGVSKVHAELLGEYFNHRFG 203 (366)
T ss_pred CCCeeeecCceeechhHHHHHHHHHHHHhhcC
Confidence 66666667888999999999988888877766
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00087 Score=64.24 Aligned_cols=115 Identities=10% Similarity=-0.032 Sum_probs=66.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHCC-------CEEEEEecChhH--HHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHH
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRG-------ARVIMACRSLEK--AETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRK 88 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G-------~~Vil~~R~~~~--l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~ 88 (330)
+++||||+|.||.+++..|+..+ ..|++++++... ++...-++.. -......|++...+...
T Consensus 4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d---------~~~~~~~~~~~~~~~~~ 74 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQD---------CAFPLLKSVVATTDPEE 74 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhh---------ccccccCCceecCCHHH
Confidence 58999999999999999999855 489999996531 2111111110 00011113322222222
Q ss_pred HHHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC--CCeEEEEcC
Q psy13409 89 CAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA--PARIINLSS 156 (330)
Q Consensus 89 l~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~--~g~IV~iSS 156 (330)
. +...|++|++||..... ..+ -.+.++.|+.- ++.+.+.+.+.. .+.+|++|.
T Consensus 75 ~-------l~~aDiVI~tAG~~~~~-~~~---R~~l~~~N~~i----~~~i~~~i~~~~~~~~iiivvsN 129 (325)
T cd01336 75 A-------FKDVDVAILVGAMPRKE-GME---RKDLLKANVKI----FKEQGEALDKYAKKNVKVLVVGN 129 (325)
T ss_pred H-------hCCCCEEEEeCCcCCCC-CCC---HHHHHHHHHHH----HHHHHHHHHHhCCCCeEEEEecC
Confidence 2 23579999999986542 122 24455566554 677777776663 455566553
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >KOG4039|consensus | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00049 Score=59.76 Aligned_cols=142 Identities=18% Similarity=0.121 Sum_probs=90.6
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHHCCC--EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHH
Q psy13409 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGA--RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVR 87 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~ 87 (330)
.+.+++++.++|.||+|-.|..+.+++++.+. +|+++.|....... ....+.-...|++.+++..
T Consensus 12 EDf~mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d~a-------------t~k~v~q~~vDf~Kl~~~a 78 (238)
T KOG4039|consen 12 EDFRMQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPDPA-------------TDKVVAQVEVDFSKLSQLA 78 (238)
T ss_pred HHHhhhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCCcc-------------ccceeeeEEechHHHHHHH
Confidence 34678999999999999999999999999984 79999998521111 3566777778886655432
Q ss_pred HHHHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCc
Q psy13409 88 KCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 88 ~l~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~ 167 (330)
. .+-.+|+++++-|.-.-... .+.+ +.+.---.+ .+.+...+++...++.+||..+.
T Consensus 79 ~-------~~qg~dV~FcaLgTTRgkaG--adgf---ykvDhDyvl----~~A~~AKe~Gck~fvLvSS~GAd------- 135 (238)
T KOG4039|consen 79 T-------NEQGPDVLFCALGTTRGKAG--ADGF---YKVDHDYVL----QLAQAAKEKGCKTFVLVSSAGAD------- 135 (238)
T ss_pred h-------hhcCCceEEEeecccccccc--cCce---EeechHHHH----HHHHHHHhCCCeEEEEEeccCCC-------
Confidence 2 23468999999986542211 1222 112111111 12222344567899999997642
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHH
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTE 196 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~ 196 (330)
.+....|--.|--++.=+-.
T Consensus 136 ---------~sSrFlY~k~KGEvE~~v~e 155 (238)
T KOG4039|consen 136 ---------PSSRFLYMKMKGEVERDVIE 155 (238)
T ss_pred ---------cccceeeeeccchhhhhhhh
Confidence 24455677777776654443
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0018 Score=60.36 Aligned_cols=76 Identities=26% Similarity=0.382 Sum_probs=56.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
.++|+++|+|+ ||+|++++..|++.|++|++++|+.+++++..+.+... ..+.....| + .
T Consensus 115 ~~~k~vliiGa-Gg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~-------~~~~~~~~~-----~---~---- 174 (270)
T TIGR00507 115 RPNQRVLIIGA-GGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRY-------GEIQAFSMD-----E---L---- 174 (270)
T ss_pred ccCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhc-------CceEEechh-----h---h----
Confidence 56899999999 69999999999999999999999998887777666431 122222111 1 0
Q ss_pred HhcCCCeeEEEEcCCCCC
Q psy13409 94 LDNESAIHLLINNAGVMM 111 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~ 111 (330)
.....|++||+.+...
T Consensus 175 --~~~~~DivInatp~gm 190 (270)
T TIGR00507 175 --PLHRVDLIINATSAGM 190 (270)
T ss_pred --cccCccEEEECCCCCC
Confidence 1135799999998764
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.022 Score=47.79 Aligned_cols=115 Identities=22% Similarity=0.218 Sum_probs=74.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCC--EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGA--RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.++.|+|++|.+|.+++..|...+. ++++++++.+.++....+++..... ..........|. ++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~--~~~~~~i~~~~~---~~--------- 66 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAP--LPSPVRITSGDY---EA--------- 66 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHG--STEEEEEEESSG---GG---------
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhh--cccccccccccc---cc---------
Confidence 3689999999999999999999975 7999999988877777776654322 122333333222 21
Q ss_pred hcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCC-CeEEEEc
Q psy13409 95 DNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAP-ARIINLS 155 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~-g~IV~iS 155 (330)
...-|++|..+|....+ ..+ -.+.+..|..- ++.+.+.+.+... +.++.+|
T Consensus 67 --~~~aDivvitag~~~~~-g~s---R~~ll~~N~~i----~~~~~~~i~~~~p~~~vivvt 118 (141)
T PF00056_consen 67 --LKDADIVVITAGVPRKP-GMS---RLDLLEANAKI----VKEIAKKIAKYAPDAIVIVVT 118 (141)
T ss_dssp --GTTESEEEETTSTSSST-TSS---HHHHHHHHHHH----HHHHHHHHHHHSTTSEEEE-S
T ss_pred --cccccEEEEeccccccc-ccc---HHHHHHHhHhH----HHHHHHHHHHhCCccEEEEeC
Confidence 23569999999986432 222 33444555544 6666666666654 4444443
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0011 Score=58.53 Aligned_cols=78 Identities=23% Similarity=0.335 Sum_probs=48.8
Q ss_pred CCCCEEEEEcCC----------------CchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEE
Q psy13409 14 LDGKTAIVTGSN----------------TGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQ 77 (330)
Q Consensus 14 ~~gk~aLITGas----------------~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~ 77 (330)
|+||++|||+|. |..|.++|+++...|+.|+++..... +. .+..+..
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~-~~--------------~p~~~~~-- 63 (185)
T PF04127_consen 1 LKGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSS-LP--------------PPPGVKV-- 63 (185)
T ss_dssp -TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS-------------------TTEEE--
T ss_pred CCCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCcc-cc--------------ccccceE--
Confidence 589999999775 78999999999999999999887742 11 1223433
Q ss_pred ccCCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCC
Q psy13409 78 LDLSSLKSVRKCAQEILDNESAIHLLINNAGVMM 111 (330)
Q Consensus 78 ~Dls~~~si~~l~~~i~~~~g~iDvlInnAG~~~ 111 (330)
.++.+.+++...+.+. ...-|++|++|++.-
T Consensus 64 i~v~sa~em~~~~~~~---~~~~Di~I~aAAVsD 94 (185)
T PF04127_consen 64 IRVESAEEMLEAVKEL---LPSADIIIMAAAVSD 94 (185)
T ss_dssp EE-SSHHHHHHHHHHH---GGGGSEEEE-SB--S
T ss_pred EEecchhhhhhhhccc---cCcceeEEEecchhh
Confidence 3466655555554444 334599999999874
|
These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A. |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0022 Score=53.95 Aligned_cols=77 Identities=29% Similarity=0.436 Sum_probs=56.2
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCC-CEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRG-ARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G-~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
.+++++++|+|+ |++|.++++.|.+.| ..|++++|+.++.++..+.+... .+..+..+.++.
T Consensus 16 ~~~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~----- 78 (155)
T cd01065 16 ELKGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGEL-----------GIAIAYLDLEEL----- 78 (155)
T ss_pred CCCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhc-----------ccceeecchhhc-----
Confidence 477899999998 899999999999996 78999999988877766655321 022233333221
Q ss_pred HHHhcCCCeeEEEEcCCCCC
Q psy13409 92 EILDNESAIHLLINNAGVMM 111 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~ 111 (330)
....|++|++.....
T Consensus 79 -----~~~~Dvvi~~~~~~~ 93 (155)
T cd01065 79 -----LAEADLIINTTPVGM 93 (155)
T ss_pred -----cccCCEEEeCcCCCC
Confidence 245799999997654
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00089 Score=66.55 Aligned_cols=79 Identities=19% Similarity=0.222 Sum_probs=52.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
+++||+++|||+++ +|.++++.|++.|++|++.+++........+.+... + +.+...+. ...+ .
T Consensus 2 ~~~~k~v~v~G~g~-~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~------g--~~~~~~~~--~~~~---~-- 65 (447)
T PRK02472 2 EYQNKKVLVLGLAK-SGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEE------G--IKVICGSH--PLEL---L-- 65 (447)
T ss_pred CcCCCEEEEEeeCH-HHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhc------C--CEEEeCCC--CHHH---h--
Confidence 47899999999975 999999999999999999998764433334444331 2 22222211 1111 1
Q ss_pred HHhcCCCeeEEEEcCCCCC
Q psy13409 93 ILDNESAIHLLINNAGVMM 111 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~ 111 (330)
+ ..+|++|+++|+..
T Consensus 66 --~--~~~d~vV~s~gi~~ 80 (447)
T PRK02472 66 --D--EDFDLMVKNPGIPY 80 (447)
T ss_pred --c--CcCCEEEECCCCCC
Confidence 1 13799999999764
|
|
| >cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR) | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.01 Score=54.95 Aligned_cols=144 Identities=16% Similarity=0.176 Sum_probs=83.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
+|++++|+|+++++|.+++..+...|++|++++++.++.+.+. .+ +.+ ..+|..+.+..+.+.+..
T Consensus 144 ~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~---------g~~---~~~~~~~~~~~~~~~~~~- 209 (325)
T cd08253 144 AGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAELVR-QA---------GAD---AVFNYRAEDLADRILAAT- 209 (325)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-Hc---------CCC---EEEeCCCcCHHHHHHHHc-
Confidence 6899999999999999999999999999999999877654432 11 111 123444444444443322
Q ss_pred hcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc-ccc
Q psy13409 95 DNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED-INL 173 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~-~~~ 173 (330)
. ...+|++++++|.. ..+ .....+ ...|++|.+++...... ....+ +..
T Consensus 210 ~-~~~~d~vi~~~~~~---------~~~---------------~~~~~l--~~~g~~v~~~~~~~~~~---~~~~~~~~~ 259 (325)
T cd08253 210 A-GQGVDVIIEVLANV---------NLA---------------KDLDVL--APGGRIVVYGSGGLRGT---IPINPLMAK 259 (325)
T ss_pred C-CCceEEEEECCchH---------HHH---------------HHHHhh--CCCCEEEEEeecCCcCC---CChhHHHhc
Confidence 2 23699999998731 011 111222 23589999887431100 00000 000
Q ss_pred ccCCCcchhhHHhHHHHHHHHHHHHHHhc
Q psy13409 174 EKGYSATGAYGRSKLANILFTTELAKRLQ 202 (330)
Q Consensus 174 ~~~~~~~~~Y~asK~a~~~~~~~la~~~~ 202 (330)
.........|...|..+..+.+.+...+.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (325)
T cd08253 260 EASIRGVLLYTATPEERAAAAEAIAAGLA 288 (325)
T ss_pred CceEEeeehhhcCHHHHHHHHHHHHHHHH
Confidence 00112233577777777777777766554
|
Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts |
| >cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.012 Score=55.09 Aligned_cols=80 Identities=23% Similarity=0.365 Sum_probs=57.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
..+++++|+|+++++|.+++..+...|++|++++++.++.+.+. .+ +.. ...|..+.+..+.+.+..
T Consensus 165 ~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~-~~---------~~~---~~~~~~~~~~~~~~~~~~ 231 (342)
T cd08266 165 RPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAK-EL---------GAD---YVIDYRKEDFVREVRELT 231 (342)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-Hc---------CCC---eEEecCChHHHHHHHHHh
Confidence 36889999999999999999999999999999999887654431 11 111 123555655555554433
Q ss_pred HhcCCCeeEEEEcCC
Q psy13409 94 LDNESAIHLLINNAG 108 (330)
Q Consensus 94 ~~~~g~iDvlInnAG 108 (330)
. ...+|++++++|
T Consensus 232 ~--~~~~d~~i~~~g 244 (342)
T cd08266 232 G--KRGVDVVVEHVG 244 (342)
T ss_pred C--CCCCcEEEECCc
Confidence 2 236899999997
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone |
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.012 Score=55.84 Aligned_cols=114 Identities=20% Similarity=0.247 Sum_probs=72.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCC--CEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRG--ARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G--~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
+++.|.|+ |++|.+++..|+..| .+|++++++.++++....++....... ...+.... .+.+.+
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~--~~~~~i~~---~~~~~l-------- 66 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFL--PSPVKIKA---GDYSDC-------- 66 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhcc--CCCeEEEc---CCHHHh--------
Confidence 46889997 999999999999999 489999999988888877776543211 11222221 222211
Q ss_pred hcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEc
Q psy13409 95 DNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLS 155 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iS 155 (330)
..-|++|+++|....+ .++. .+.+..|..- ++.+.+.+.+.. .+.+|++|
T Consensus 67 ---~~aDIVIitag~~~~~-g~~R---~dll~~N~~i----~~~~~~~i~~~~~~~~vivvs 117 (306)
T cd05291 67 ---KDADIVVITAGAPQKP-GETR---LDLLEKNAKI----MKSIVPKIKASGFDGIFLVAS 117 (306)
T ss_pred ---CCCCEEEEccCCCCCC-CCCH---HHHHHHHHHH----HHHHHHHHHHhCCCeEEEEec
Confidence 3469999999986432 2222 3444455444 666666666655 45556555
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0021 Score=61.32 Aligned_cols=115 Identities=19% Similarity=0.165 Sum_probs=67.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHH-C--CCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAK-R--GARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~-~--G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
++++|+||+|+||.+++..|.. . +..+++.+|++.. ....-++.. .........++-.+ +.+.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~-~g~alDl~~------~~~~~~i~~~~~~d---~~~~---- 66 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVT-PGVAVDLSH------IPTAVKIKGFSGED---PTPA---- 66 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCC-cceehhhhc------CCCCceEEEeCCCC---HHHH----
Confidence 5789999999999999998865 3 3478888887532 111111211 01011111111112 1111
Q ss_pred HhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcC
Q psy13409 94 LDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSS 156 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS 156 (330)
....|++|.++|....+. .+-.+.+..|... ++.+.+.|.+.+..++|.+.|
T Consensus 67 ---l~~~DiVIitaG~~~~~~----~~R~dll~~N~~i----~~~ii~~i~~~~~~~ivivvs 118 (312)
T PRK05086 67 ---LEGADVVLISAGVARKPG----MDRSDLFNVNAGI----VKNLVEKVAKTCPKACIGIIT 118 (312)
T ss_pred ---cCCCCEEEEcCCCCCCCC----CCHHHHHHHHHHH----HHHHHHHHHHhCCCeEEEEcc
Confidence 134799999999864332 1234456666655 667777777777677777777
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.011 Score=70.04 Aligned_cols=174 Identities=15% Similarity=0.124 Sum_probs=106.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
.+.++.++|++.+++++.+++..|.++|+.|+++..... ....... .+..+..+.+.-.+..++..+++.
T Consensus 1752 ~~~~~~~~v~~d~~~~~~~L~~~L~~~G~~v~~~~~~~~-~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 1821 (2582)
T TIGR02813 1752 KQSGANALVIDDDGHNAGVLAEKLIAAGWQVAVVRSPWV-VSHSASP---------LASAIASVTLGTIDDTSIEAVIKD 1821 (2582)
T ss_pred cccCceeEEEcCCcchHHHHHHHHHhCCCeEEEeecccc-ccccccc---------cccccccccccccchHHHHHHHHh
Confidence 456888999988899999999999999999887642211 0000000 122333445555566778888888
Q ss_pred HHhcCCCeeEEEEcCCCCCCC-CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccc
Q psy13409 93 ILDNESAIHLLINNAGVMMCP-RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDI 171 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~-~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~ 171 (330)
+....+.++.+||..+..... ...+.......-...+...|.+.|.+-+.+...+.+.++.++...|.+|......
T Consensus 1822 ~~~~~~~~~g~i~l~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~ak~~~~~l~~~~~~~~~~vsr~~G~~g~~~~~~--- 1898 (2582)
T TIGR02813 1822 IEEKTAQIDGFIHLQPQHKSVADKVDAIELPEAAKQSLMLAFLFAKLLNVKLATNARASFVTVSRIDGGFGYSNGDA--- 1898 (2582)
T ss_pred hhccccccceEEEeccccccccccccccccchhhHHHHHHHHHHHHhhchhhccCCCeEEEEEEecCCccccCCccc---
Confidence 878788899999988755321 0001011112222344456667777666555555678899999887777411100
Q ss_pred ccccCCCcchhhHHhHHHHHHHHHHHHHHhc
Q psy13409 172 NLEKGYSATGAYGRSKLANILFTTELAKRLQ 202 (330)
Q Consensus 172 ~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~ 202 (330)
..+... .--....+++.+|+|+++.||-
T Consensus 1899 --~~~~~~-~~~~~~~a~l~Gl~Ktl~~E~P 1926 (2582)
T TIGR02813 1899 --DSGTQQ-VKAELNQAALAGLTKTLNHEWN 1926 (2582)
T ss_pred --cccccc-cccchhhhhHHHHHHhHHHHCC
Confidence 000000 0012356899999999999987
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.013 Score=59.47 Aligned_cols=121 Identities=18% Similarity=0.213 Sum_probs=75.3
Q ss_pred cCcccCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCH-
Q psy13409 5 SGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSL- 83 (330)
Q Consensus 5 ~~~~~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~- 83 (330)
.+..++.....+.+++|+|+ |.+|+..+..+...|+.|+++++++++++...+ + +.+. +..|..+.
T Consensus 154 ~g~~taaG~~pg~kVlViGa-G~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes-l---------GA~~--v~i~~~e~~ 220 (509)
T PRK09424 154 TGQITAAGKVPPAKVLVIGA-GVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES-M---------GAEF--LELDFEEEG 220 (509)
T ss_pred CCceeccCCcCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-c---------CCeE--EEecccccc
Confidence 34444455677999999999 999999999999999999999999987665432 2 3332 22232221
Q ss_pred ------------HHHHHHHHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeE
Q psy13409 84 ------------KSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARI 151 (330)
Q Consensus 84 ------------~si~~l~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~I 151 (330)
+..++..+.+.+..+..|++|.++|...... +..+++..+..|+ .+|.|
T Consensus 221 ~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~a-----------------P~lit~~~v~~mk--pGgvI 281 (509)
T PRK09424 221 GSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPA-----------------PKLITAEMVASMK--PGSVI 281 (509)
T ss_pred ccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccC-----------------cchHHHHHHHhcC--CCCEE
Confidence 1112222222333356899999999753211 1122344555554 36888
Q ss_pred EEEcCC
Q psy13409 152 INLSSL 157 (330)
Q Consensus 152 V~iSS~ 157 (330)
|.++..
T Consensus 282 Vdvg~~ 287 (509)
T PRK09424 282 VDLAAE 287 (509)
T ss_pred EEEccC
Confidence 888764
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0059 Score=58.51 Aligned_cols=110 Identities=11% Similarity=0.009 Sum_probs=67.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHCCC-------EEEEEecCh--hHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHH-
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRGA-------RVIMACRSL--EKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVR- 87 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G~-------~Vil~~R~~--~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~- 87 (330)
++.|+||+|.||..++..|+..|. .+++++++. +. ......|+.+.....
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~--------------------~~g~~~Dl~d~~~~~~ 61 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKA--------------------LEGVVMELQDCAFPLL 61 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCc--------------------cceeeeehhhhccccc
Confidence 589999999999999999998663 499999986 32 223344444431000
Q ss_pred ---HHHHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-C-CeEEEEc
Q psy13409 88 ---KCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-P-ARIINLS 155 (330)
Q Consensus 88 ---~l~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~-g~IV~iS 155 (330)
..-....+.....|++|+.||....+ .++ -.+.+..|.. +++.+.+.+.+.. + +.+|++|
T Consensus 62 ~~~~i~~~~~~~~~~aDiVVitAG~~~~~-g~t---R~dll~~N~~----i~~~i~~~i~~~~~~~~iiivvs 126 (323)
T cd00704 62 KGVVITTDPEEAFKDVDVAILVGAFPRKP-GME---RADLLRKNAK----IFKEQGEALNKVAKPTVKVLVVG 126 (323)
T ss_pred CCcEEecChHHHhCCCCEEEEeCCCCCCc-CCc---HHHHHHHhHH----HHHHHHHHHHHhCCCCeEEEEeC
Confidence 00011122334579999999986433 222 3344555554 4788888887773 3 5555554
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0044 Score=59.74 Aligned_cols=84 Identities=20% Similarity=0.391 Sum_probs=61.2
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecCh---------------------hHHHHHHHHHHHhhcccCC
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSL---------------------EKAETAADDIRTSLKDVKD 69 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~---------------------~~l~~~~~~l~~~~~~~~~ 69 (330)
.+|++++|+|.|+ ||+|.++++.|+..|. ++++++++. .+.+.+.+.+++. ++
T Consensus 20 ~~L~~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~i----np 94 (338)
T PRK12475 20 RKIREKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKI----NS 94 (338)
T ss_pred HhhcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHH----CC
Confidence 3689999999998 8899999999999998 899998863 2344444555543 35
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHHhcCCCeeEEEEcCC
Q psy13409 70 AGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAG 108 (330)
Q Consensus 70 ~~~v~~i~~Dls~~~si~~l~~~i~~~~g~iDvlInnAG 108 (330)
..++..+..|++. +.++.++ ...|++|.+..
T Consensus 95 ~v~i~~~~~~~~~-~~~~~~~-------~~~DlVid~~D 125 (338)
T PRK12475 95 EVEIVPVVTDVTV-EELEELV-------KEVDLIIDATD 125 (338)
T ss_pred CcEEEEEeccCCH-HHHHHHh-------cCCCEEEEcCC
Confidence 6778888888863 3344443 24699888874
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0031 Score=59.22 Aligned_cols=48 Identities=23% Similarity=0.285 Sum_probs=42.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIR 61 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~ 61 (330)
++++++++|.|+ ||.|++++..|++.|+ +|+++.|+.++.+++.+.+.
T Consensus 122 ~~~~k~vlvlGa-GGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~ 170 (282)
T TIGR01809 122 PLAGFRGLVIGA-GGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGV 170 (282)
T ss_pred ccCCceEEEEcC-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhh
Confidence 468999999988 9999999999999997 79999999998888777654
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.005 Score=54.90 Aligned_cols=84 Identities=19% Similarity=0.296 Sum_probs=58.4
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecC-------------------hhHHHHHHHHHHHhhcccCCCC
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRS-------------------LEKAETAADDIRTSLKDVKDAG 71 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~-------------------~~~l~~~~~~l~~~~~~~~~~~ 71 (330)
.+|++++++|.|+ ||+|.++++.|+..|. ++++++.+ ..+.+.+.+.+++. ++..
T Consensus 17 ~kl~~~~VlviG~-GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~----np~v 91 (202)
T TIGR02356 17 QRLLNSHVLIIGA-GGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLREL----NSDI 91 (202)
T ss_pred HHhcCCCEEEECC-CHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHh----CCCC
Confidence 4689999999997 8999999999999998 89999876 23444444555443 2455
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHhcCCCeeEEEEcCC
Q psy13409 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAG 108 (330)
Q Consensus 72 ~v~~i~~Dls~~~si~~l~~~i~~~~g~iDvlInnAG 108 (330)
++..+..++.. +.++.++ ...|++|.+..
T Consensus 92 ~i~~~~~~i~~-~~~~~~~-------~~~D~Vi~~~d 120 (202)
T TIGR02356 92 QVTALKERVTA-ENLELLI-------NNVDLVLDCTD 120 (202)
T ss_pred EEEEehhcCCH-HHHHHHH-------hCCCEEEECCC
Confidence 66666666643 3333332 24688888764
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0064 Score=58.30 Aligned_cols=112 Identities=10% Similarity=-0.075 Sum_probs=69.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHCCC-------EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHH--
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRGA-------RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRK-- 88 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G~-------~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~-- 88 (330)
++.|+|++|.+|.+++..|+..|. .++++++++.. ........|+.+......
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~------------------~~a~g~~~Dl~d~~~~~~~~ 62 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAM------------------KVLEGVVMELMDCAFPLLDG 62 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcc------------------cccceeEeehhcccchhcCc
Confidence 478999999999999999998654 59999987542 112344555555441100
Q ss_pred HH--HHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-C-CeEEEEc
Q psy13409 89 CA--QEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-P-ARIINLS 155 (330)
Q Consensus 89 l~--~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~-g~IV~iS 155 (330)
.. ....+.....|++|+.||..... .+++.+.+..|+.- ++.+.+.+.+.. + +.+|++|
T Consensus 63 ~~~~~~~~~~~~~aDiVVitAG~~~~~----~~tr~~ll~~N~~i----~k~i~~~i~~~~~~~~iiivvs 125 (324)
T TIGR01758 63 VVPTHDPAVAFTDVDVAILVGAFPRKE----GMERRDLLSKNVKI----FKEQGRALDKLAKKDCKVLVVG 125 (324)
T ss_pred eeccCChHHHhCCCCEEEEcCCCCCCC----CCcHHHHHHHHHHH----HHHHHHHHHhhCCCCeEEEEeC
Confidence 00 01122334579999999986432 23355666666655 777788777763 4 5555555
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0084 Score=56.39 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=44.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHh
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTS 63 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~ 63 (330)
.+++++++|.|+ ||.|++++..|+..|+ +|++++|+.++.+.+.+.+...
T Consensus 124 ~~~~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~ 174 (284)
T PRK12549 124 DASLERVVQLGA-GGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNAR 174 (284)
T ss_pred CccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhh
Confidence 478899999999 8899999999999998 7999999999988888877553
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0065 Score=57.06 Aligned_cols=81 Identities=31% Similarity=0.399 Sum_probs=59.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
+.+|++++|.|+ ||-+++++..|++.|+ +|+++.|+.++.+++++.+.+.. ..+. ..++.+.+..+
T Consensus 123 ~~~~~~vlilGA-GGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~------~~~~--~~~~~~~~~~~---- 189 (283)
T COG0169 123 DVTGKRVLILGA-GGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELG------AAVE--AAALADLEGLE---- 189 (283)
T ss_pred ccCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcc------cccc--ccccccccccc----
Confidence 457999999999 8999999999999996 79999999999999888876531 1111 11222211111
Q ss_pred HHHhcCCCeeEEEEcCCCCCCC
Q psy13409 92 EILDNESAIHLLINNAGVMMCP 113 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~ 113 (330)
..|++||+.......
T Consensus 190 -------~~dliINaTp~Gm~~ 204 (283)
T COG0169 190 -------EADLLINATPVGMAG 204 (283)
T ss_pred -------ccCEEEECCCCCCCC
Confidence 359999999877644
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0033 Score=58.84 Aligned_cols=48 Identities=27% Similarity=0.425 Sum_probs=42.9
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCC-CEEEEEecChhHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRG-ARVIMACRSLEKAETAADDIR 61 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G-~~Vil~~R~~~~l~~~~~~l~ 61 (330)
++++|+++|+|+ ||+|++++..|...| .+|++++|+.++++++.+.+.
T Consensus 120 ~~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~ 168 (278)
T PRK00258 120 DLKGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFG 168 (278)
T ss_pred CCCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhh
Confidence 588999999998 999999999999999 689999999988877776654
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0065 Score=58.18 Aligned_cols=156 Identities=12% Similarity=0.014 Sum_probs=93.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCC-------EEEEEecChhH--HHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGA-------RVIMACRSLEK--AETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVR 87 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~-------~Vil~~R~~~~--l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~ 87 (330)
+++.|+|++|.||..++..|+..|. .+++++.+... +...+-++....... ..++... . .+.
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~--~~~~~i~-~--~~~---- 73 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPL--LAEIVIT-D--DPN---- 73 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccc--cCceEEe-c--CcH----
Confidence 4789999999999999999998875 69999985432 333333333211000 0112111 0 111
Q ss_pred HHHHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC--CCeEEEEcCCCcccCCCC
Q psy13409 88 KCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA--PARIINLSSLAHTWGDGS 165 (330)
Q Consensus 88 ~l~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~--~g~IV~iSS~~~~~~~~~ 165 (330)
+....-|++|.+||....+ .++ -.+.+..|.. +++.+.+.+.+.. .+.+|++|-..-...
T Consensus 74 -------~~~~daDivvitaG~~~k~-g~t---R~dll~~N~~----i~~~i~~~i~~~~~~~~iiivvsNPvD~~t--- 135 (322)
T cd01338 74 -------VAFKDADWALLVGAKPRGP-GME---RADLLKANGK----IFTAQGKALNDVASRDVKVLVVGNPCNTNA--- 135 (322)
T ss_pred -------HHhCCCCEEEEeCCCCCCC-CCc---HHHHHHHHHH----HHHHHHHHHHhhCCCCeEEEEecCcHHHHH---
Confidence 1123469999999986433 223 2334555554 4778888877765 355565552111110
Q ss_pred Cccccccccc-CCCcchhhHHhHHHHHHHHHHHHHHhc
Q psy13409 166 MHFEDINLEK-GYSATGAYGRSKLANILFTTELAKRLQ 202 (330)
Q Consensus 166 ~~~~~~~~~~-~~~~~~~Y~asK~a~~~~~~~la~~~~ 202 (330)
+. .-... .++....|+.++.--..|...+|+.++
T Consensus 136 --~~-~~k~sg~~p~~~ViG~t~LDs~Rl~~~la~~lg 170 (322)
T cd01338 136 --LI-AMKNAPDIPPDNFTAMTRLDHNRAKSQLAKKAG 170 (322)
T ss_pred --HH-HHHHcCCCChHheEEehHHHHHHHHHHHHHHhC
Confidence 00 00122 256677899999999999999999988
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0033 Score=64.24 Aligned_cols=48 Identities=40% Similarity=0.614 Sum_probs=42.0
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDI 60 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l 60 (330)
.++++|+++|+|+ ||+|++++..|++.|++|++++|+.++++++.+.+
T Consensus 375 ~~~~~k~vlIlGa-GGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l 422 (529)
T PLN02520 375 SPLAGKLFVVIGA-GGAGKALAYGAKEKGARVVIANRTYERAKELADAV 422 (529)
T ss_pred cCCCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh
Confidence 4578999999999 69999999999999999999999988777665543
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0054 Score=60.75 Aligned_cols=77 Identities=16% Similarity=0.311 Sum_probs=55.7
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
+++|++++|.|+ ||+|+.+++.|...|+ +|+++.|+.++.+.+.+.+. ... .+ ..++....
T Consensus 178 ~l~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~--------~~~--~~-----~~~~l~~~-- 239 (414)
T PRK13940 178 NISSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFR--------NAS--AH-----YLSELPQL-- 239 (414)
T ss_pred CccCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhc--------CCe--Ee-----cHHHHHHH--
Confidence 588999999999 9999999999999996 79999999887766665431 111 11 12222222
Q ss_pred HHHhcCCCeeEEEEcCCCCCC
Q psy13409 92 EILDNESAIHLLINNAGVMMC 112 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~ 112 (330)
....|++|++.+...+
T Consensus 240 -----l~~aDiVI~aT~a~~~ 255 (414)
T PRK13940 240 -----IKKADIIIAAVNVLEY 255 (414)
T ss_pred -----hccCCEEEECcCCCCe
Confidence 2346999999987543
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0025 Score=56.82 Aligned_cols=47 Identities=34% Similarity=0.427 Sum_probs=40.9
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAAD 58 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~ 58 (330)
..+++||+++|+|. |.+|+.+++.|.+.|++|++++++.+++++..+
T Consensus 23 ~~~l~gk~v~I~G~-G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~ 69 (200)
T cd01075 23 TDSLEGKTVAVQGL-GKVGYKLAEHLLEEGAKLIVADINEEAVARAAE 69 (200)
T ss_pred CCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 45789999999999 589999999999999999999999876665544
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.016 Score=54.43 Aligned_cols=49 Identities=22% Similarity=0.351 Sum_probs=43.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRT 62 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~ 62 (330)
++++|+++|.|+ ||-|++++..|++.|+ +|+++.|+.++.+++.+.+..
T Consensus 124 ~~~~k~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~ 173 (283)
T PRK14027 124 NAKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINN 173 (283)
T ss_pred CcCCCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh
Confidence 467899999999 9999999999999997 799999999988888777654
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.035 Score=50.63 Aligned_cols=84 Identities=20% Similarity=0.298 Sum_probs=54.7
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecCh-------------------hHHHHHHHHHHHhhcccCCCCe
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSL-------------------EKAETAADDIRTSLKDVKDAGE 72 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~-------------------~~l~~~~~~l~~~~~~~~~~~~ 72 (330)
+|++.+++|.|. ||+|.++++.|++.|. ++++++.+. .+.+-+.+.+.+ +++..+
T Consensus 8 ~L~~~~VlVvG~-GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~----inP~~~ 82 (231)
T cd00755 8 KLRNAHVAVVGL-GGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRD----INPECE 82 (231)
T ss_pred HHhCCCEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHH----HCCCcE
Confidence 578999999998 8999999999999998 789888642 122223333333 234566
Q ss_pred EEEEEccCCCHHHHHHHHHHHHhcCCCeeEEEEcCC
Q psy13409 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAG 108 (330)
Q Consensus 73 v~~i~~Dls~~~si~~l~~~i~~~~g~iDvlInnAG 108 (330)
+..+...++. +....++ ...+|++|.+..
T Consensus 83 V~~~~~~i~~-~~~~~l~------~~~~D~VvdaiD 111 (231)
T cd00755 83 VDAVEEFLTP-DNSEDLL------GGDPDFVVDAID 111 (231)
T ss_pred EEEeeeecCH-hHHHHHh------cCCCCEEEEcCC
Confidence 6666655553 2233332 124688777763
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0068 Score=55.03 Aligned_cols=75 Identities=19% Similarity=0.291 Sum_probs=58.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
|.++|.|+ |-+|+.+|+.|.+.|++|++++++++..++.... ......+.+|-++++.++++ -
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~----------~~~~~~v~gd~t~~~~L~~a------g 63 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEGHNVVLIDRDEERVEEFLAD----------ELDTHVVIGDATDEDVLEEA------G 63 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh----------hcceEEEEecCCCHHHHHhc------C
Confidence 46788888 8899999999999999999999999887664321 23578899999998876555 1
Q ss_pred CCCeeEEEEcCC
Q psy13409 97 ESAIHLLINNAG 108 (330)
Q Consensus 97 ~g~iDvlInnAG 108 (330)
....|++|...|
T Consensus 64 i~~aD~vva~t~ 75 (225)
T COG0569 64 IDDADAVVAATG 75 (225)
T ss_pred CCcCCEEEEeeC
Confidence 234688887776
|
|
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.015 Score=56.81 Aligned_cols=82 Identities=18% Similarity=0.148 Sum_probs=54.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHH-HHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKS-VRKCAQEI 93 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~s-i~~l~~~i 93 (330)
+.|+|||||++..+|+.+++.|.+.|++|++++.+...+....+.+. ....+...-.+.+. ++.+.+ +
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~d----------~~~~~p~p~~d~~~~~~~L~~-i 71 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLSRFSRAVD----------GFYTIPSPRWDPDAYIQALLS-I 71 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhhh----------heEEeCCCCCCHHHHHHHHHH-H
Confidence 46999999999999999999999999999999998765443322221 12222112233333 344443 3
Q ss_pred HhcCCCeeEEEEcCC
Q psy13409 94 LDNESAIHLLINNAG 108 (330)
Q Consensus 94 ~~~~g~iDvlInnAG 108 (330)
.+.. .+|++|-...
T Consensus 72 ~~~~-~id~vIP~~e 85 (389)
T PRK06849 72 VQRE-NIDLLIPTCE 85 (389)
T ss_pred HHHc-CCCEEEECCh
Confidence 3333 4899988775
|
|
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0045 Score=58.73 Aligned_cols=78 Identities=21% Similarity=0.256 Sum_probs=62.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
-..++|-||+|..|.-++++|+++|.+-.+.+||..++..+...+ +.+...+++++ ++.+++++.
T Consensus 6 e~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~kl~~l~~~L---------G~~~~~~p~~~--p~~~~~~~~---- 70 (382)
T COG3268 6 EYDIIIYGATGYAGGLVAEYLAREGLTAALAGRSSAKLDALRASL---------GPEAAVFPLGV--PAALEAMAS---- 70 (382)
T ss_pred ceeEEEEccccchhHHHHHHHHHcCCchhhccCCHHHHHHHHHhc---------CccccccCCCC--HHHHHHHHh----
Confidence 356889999999999999999999999999999999998887776 34445555555 555555554
Q ss_pred cCCCeeEEEEcCCCCC
Q psy13409 96 NESAIHLLINNAGVMM 111 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~ 111 (330)
..++++||+|...
T Consensus 71 ---~~~VVlncvGPyt 83 (382)
T COG3268 71 ---RTQVVLNCVGPYT 83 (382)
T ss_pred ---cceEEEecccccc
Confidence 3599999999764
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.013 Score=53.12 Aligned_cols=84 Identities=21% Similarity=0.311 Sum_probs=57.8
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecC-------------------hhHHHHHHHHHHHhhcccCCCC
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRS-------------------LEKAETAADDIRTSLKDVKDAG 71 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~-------------------~~~l~~~~~~l~~~~~~~~~~~ 71 (330)
.+|++++|+|.|+ ||+|.++++.|+..|. +++++|.+ ..+.+.+.+.+++. ++..
T Consensus 17 ~~L~~~~VlivG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~----np~~ 91 (228)
T cd00757 17 EKLKNARVLVVGA-GGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAI----NPDV 91 (228)
T ss_pred HHHhCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHh----CCCC
Confidence 3688999999997 9999999999999998 78887543 23444444445443 2456
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHhcCCCeeEEEEcCC
Q psy13409 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAG 108 (330)
Q Consensus 72 ~v~~i~~Dls~~~si~~l~~~i~~~~g~iDvlInnAG 108 (330)
++..+..+++ .+.+..+++ ..|++|.+..
T Consensus 92 ~i~~~~~~i~-~~~~~~~~~-------~~DvVi~~~d 120 (228)
T cd00757 92 EIEAYNERLD-AENAEELIA-------GYDLVLDCTD 120 (228)
T ss_pred EEEEecceeC-HHHHHHHHh-------CCCEEEEcCC
Confidence 7777777764 333333332 3688888875
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.06 Score=50.22 Aligned_cols=37 Identities=22% Similarity=0.340 Sum_probs=32.9
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecC
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRS 49 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~ 49 (330)
.+|++.+|+|.|+ ||+|.++++.|++.|. ++++++.+
T Consensus 26 ~kL~~s~VlVvG~-GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 26 QLFADAHICVVGI-GGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred HHhcCCCEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3589999999998 8999999999999995 79888865
|
|
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0054 Score=56.83 Aligned_cols=74 Identities=12% Similarity=0.248 Sum_probs=54.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
++++|+|||+- |+.+++.|.+.|+.|+++.++....+... ......+..+..+.+++..++.+
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~------------~~g~~~v~~g~l~~~~l~~~l~~---- 63 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHLYP------------IHQALTVHTGALDPQELREFLKR---- 63 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCcccccc------------ccCCceEEECCCCHHHHHHHHHh----
Confidence 47999999998 99999999999999999999876433221 11122345666777777666654
Q ss_pred CCCeeEEEEcCC
Q psy13409 97 ESAIHLLINNAG 108 (330)
Q Consensus 97 ~g~iDvlInnAG 108 (330)
..+|++|+.+.
T Consensus 64 -~~i~~VIDAtH 74 (256)
T TIGR00715 64 -HSIDILVDATH 74 (256)
T ss_pred -cCCCEEEEcCC
Confidence 26899999886
|
This enzyme was found to be a monomer by gel filtration. |
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.018 Score=47.69 Aligned_cols=80 Identities=19% Similarity=0.317 Sum_probs=57.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecC-------------------hhHHHHHHHHHHHhhcccCCCCeEEE
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRS-------------------LEKAETAADDIRTSLKDVKDAGEVVI 75 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~-------------------~~~l~~~~~~l~~~~~~~~~~~~v~~ 75 (330)
+++++|.|+ |++|..+++.|+..|. ++++++.. ..+.+.+.+.+++.. +..++..
T Consensus 2 ~~~v~iiG~-G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~n----p~~~v~~ 76 (135)
T PF00899_consen 2 NKRVLIIGA-GGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEIN----PDVEVEA 76 (135)
T ss_dssp T-EEEEEST-SHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHS----TTSEEEE
T ss_pred CCEEEEECc-CHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhc----Cceeeee
Confidence 578999998 9999999999999998 79998863 134455555555543 5778888
Q ss_pred EEccCCCHHHHHHHHHHHHhcCCCeeEEEEcCC
Q psy13409 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAG 108 (330)
Q Consensus 76 i~~Dls~~~si~~l~~~i~~~~g~iDvlInnAG 108 (330)
+..++ +.+..+.+++ ..|++|.+..
T Consensus 77 ~~~~~-~~~~~~~~~~-------~~d~vi~~~d 101 (135)
T PF00899_consen 77 IPEKI-DEENIEELLK-------DYDIVIDCVD 101 (135)
T ss_dssp EESHC-SHHHHHHHHH-------TSSEEEEESS
T ss_pred eeccc-cccccccccc-------CCCEEEEecC
Confidence 88888 3344555542 3589888764
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.012 Score=57.41 Aligned_cols=76 Identities=14% Similarity=0.219 Sum_probs=54.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
+.+++++|.|+ |.+|+..++.+...|++|++++|+.+++++..+.+ +.. +..+..+.+.+.+.+.
T Consensus 165 l~~~~VlViGa-G~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~---------g~~---v~~~~~~~~~l~~~l~-- 229 (370)
T TIGR00518 165 VEPGDVTIIGG-GVVGTNAAKMANGLGATVTILDINIDRLRQLDAEF---------GGR---IHTRYSNAYEIEDAVK-- 229 (370)
T ss_pred CCCceEEEEcC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhc---------Cce---eEeccCCHHHHHHHHc--
Confidence 67788999988 89999999999999999999999987765543322 221 2234455554444332
Q ss_pred HhcCCCeeEEEEcCCC
Q psy13409 94 LDNESAIHLLINNAGV 109 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~ 109 (330)
..|++|++++.
T Consensus 230 -----~aDvVI~a~~~ 240 (370)
T TIGR00518 230 -----RADLLIGAVLI 240 (370)
T ss_pred -----cCCEEEEcccc
Confidence 45999999865
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.011 Score=56.77 Aligned_cols=101 Identities=17% Similarity=0.319 Sum_probs=65.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
|+++||+||+||+|...+......|+.++++..++++.+ ..+++ +... ..|..+++ +.+++++
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~-~~~~l---------GAd~---vi~y~~~~----~~~~v~~ 205 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLE-LLKEL---------GADH---VINYREED----FVEQVRE 205 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHH-HHHhc---------CCCE---EEcCCccc----HHHHHHH
Confidence 999999999999999988888888988777777776655 33332 2211 12344433 3444443
Q ss_pred cC-C-CeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCc
Q psy13409 96 NE-S-AIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAH 159 (330)
Q Consensus 96 ~~-g-~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~ 159 (330)
.. + .+|+++...|.. . ....+..+.. .|+++.+....+
T Consensus 206 ~t~g~gvDvv~D~vG~~---------~---------------~~~~l~~l~~--~G~lv~ig~~~g 245 (326)
T COG0604 206 LTGGKGVDVVLDTVGGD---------T---------------FAASLAALAP--GGRLVSIGALSG 245 (326)
T ss_pred HcCCCCceEEEECCCHH---------H---------------HHHHHHHhcc--CCEEEEEecCCC
Confidence 22 3 599999999842 1 1112233332 499999998775
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.015 Score=56.02 Aligned_cols=84 Identities=19% Similarity=0.350 Sum_probs=58.3
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecCh---------------------hHHHHHHHHHHHhhcccCC
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSL---------------------EKAETAADDIRTSLKDVKD 69 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~---------------------~~l~~~~~~l~~~~~~~~~ 69 (330)
.+|++++|+|.|+ ||+|..+++.|+..|. +|++++.+. .+.+.+.+.+++. ++
T Consensus 20 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~i----np 94 (339)
T PRK07688 20 QKLREKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEI----NS 94 (339)
T ss_pred HHhcCCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHH----CC
Confidence 3689999999999 9999999999999998 899999863 2333333344332 34
Q ss_pred CCeEEEEEccCCCHHHHHHHHHHHHhcCCCeeEEEEcCC
Q psy13409 70 AGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAG 108 (330)
Q Consensus 70 ~~~v~~i~~Dls~~~si~~l~~~i~~~~g~iDvlInnAG 108 (330)
..++..+..+++. +.+..++ ...|++|.+..
T Consensus 95 ~v~v~~~~~~~~~-~~~~~~~-------~~~DlVid~~D 125 (339)
T PRK07688 95 DVRVEAIVQDVTA-EELEELV-------TGVDLIIDATD 125 (339)
T ss_pred CcEEEEEeccCCH-HHHHHHH-------cCCCEEEEcCC
Confidence 5677777777754 3333332 23588888753
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.012 Score=55.87 Aligned_cols=80 Identities=15% Similarity=0.277 Sum_probs=53.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.|.+++|+|++|++|.+++..+...|++|+++.++.++.+.+.+.+ +.. .+ .|..+.++....+....
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~l---------Ga~-~v--i~~~~~~~~~~~i~~~~ 218 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKL---------GFD-DA--FNYKEEPDLDAALKRYF 218 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---------CCc-ee--EEcCCcccHHHHHHHhC
Confidence 6899999999999999999888888999999999887655543322 111 11 22222222333333322
Q ss_pred hcCCCeeEEEEcCC
Q psy13409 95 DNESAIHLLINNAG 108 (330)
Q Consensus 95 ~~~g~iDvlInnAG 108 (330)
. +.+|+++++.|
T Consensus 219 ~--~gvd~v~d~~g 230 (338)
T cd08295 219 P--NGIDIYFDNVG 230 (338)
T ss_pred C--CCcEEEEECCC
Confidence 2 46899999887
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.016 Score=54.55 Aligned_cols=49 Identities=22% Similarity=0.295 Sum_probs=40.0
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecCh---hHHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSL---EKAETAADDIR 61 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~---~~l~~~~~~l~ 61 (330)
.++++|+++|.|+ ||-+++++..|+..|+ +|+++.|+. ++.+++.+.+.
T Consensus 120 ~~~~~k~vlvlGa-GGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~ 172 (288)
T PRK12749 120 FDIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVN 172 (288)
T ss_pred CCcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhh
Confidence 4578999999998 7779999999999997 799999995 46666655553
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.073 Score=50.81 Aligned_cols=116 Identities=17% Similarity=0.155 Sum_probs=75.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCC--EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGA--RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
-.++++.|+|+ |.+|.+++..|+..|. .+++++++.+.+.....+++...... .++.... .+.++
T Consensus 4 ~~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~---~~~~i~~---~~~~~------ 70 (315)
T PRK00066 4 KQHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFT---SPTKIYA---GDYSD------ 70 (315)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcccc---CCeEEEe---CCHHH------
Confidence 46789999998 9999999999999987 79999999988877777776543211 1233322 12221
Q ss_pred HHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEc
Q psy13409 92 EILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLS 155 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iS 155 (330)
+..-|++|..||....+ .++. .+.+..|..- ++.+.+.+.+.. .+.+|++|
T Consensus 71 -----~~~adivIitag~~~k~-g~~R---~dll~~N~~i----~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 71 -----CKDADLVVITAGAPQKP-GETR---LDLVEKNLKI----FKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred -----hCCCCEEEEecCCCCCC-CCCH---HHHHHHHHHH----HHHHHHHHHHhCCCeEEEEcc
Confidence 12459999999986433 2232 3344455444 666666666655 45556555
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.037 Score=49.88 Aligned_cols=103 Identities=23% Similarity=0.262 Sum_probs=65.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
..|++++|+|+++ +|.+++..+...|.+|+++.++.++.+.+ +.+ +.. . ..|..+.+....+.
T Consensus 133 ~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~---------g~~-~--~~~~~~~~~~~~~~--- 195 (271)
T cd05188 133 KPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRSDEKLELA-KEL---------GAD-H--VIDYKEEDLEEELR--- 195 (271)
T ss_pred CCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCCHHHHHHH-HHh---------CCc-e--eccCCcCCHHHHHH---
Confidence 4689999999988 99999999989999999999987654433 211 111 1 12333333333333
Q ss_pred HhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCC
Q psy13409 94 LDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLA 158 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~ 158 (330)
....+.+|++|++++.. ...+..++.+. ..|+++.++...
T Consensus 196 ~~~~~~~d~vi~~~~~~-----------------------~~~~~~~~~l~--~~G~~v~~~~~~ 235 (271)
T cd05188 196 LTGGGGADVVIDAVGGP-----------------------ETLAQALRLLR--PGGRIVVVGGTS 235 (271)
T ss_pred HhcCCCCCEEEECCCCH-----------------------HHHHHHHHhcc--cCCEEEEEccCC
Confidence 22335799999998742 11233344443 358999888754
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.014 Score=56.99 Aligned_cols=83 Identities=22% Similarity=0.257 Sum_probs=57.9
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecC-------------------hhHHHHHHHHHHHhhcccCCCCe
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRS-------------------LEKAETAADDIRTSLKDVKDAGE 72 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~-------------------~~~l~~~~~~l~~~~~~~~~~~~ 72 (330)
++++++|+|.|+ ||+|.+++..|+..|. ++++++++ ..+.+.+.+.+.+.. +..+
T Consensus 132 ~l~~~~VlvvG~-GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n----p~v~ 206 (376)
T PRK08762 132 RLLEARVLLIGA-GGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALN----PDVQ 206 (376)
T ss_pred HHhcCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHC----CCCE
Confidence 588999999977 8999999999999998 79999987 345555555555542 3455
Q ss_pred EEEEEccCCCHHHHHHHHHHHHhcCCCeeEEEEcCC
Q psy13409 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAG 108 (330)
Q Consensus 73 v~~i~~Dls~~~si~~l~~~i~~~~g~iDvlInnAG 108 (330)
+..+...+++ +.++.+++ ..|++|++..
T Consensus 207 v~~~~~~~~~-~~~~~~~~-------~~D~Vv~~~d 234 (376)
T PRK08762 207 VEAVQERVTS-DNVEALLQ-------DVDVVVDGAD 234 (376)
T ss_pred EEEEeccCCh-HHHHHHHh-------CCCEEEECCC
Confidence 6666555543 23333332 3588888875
|
|
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.015 Score=56.00 Aligned_cols=80 Identities=13% Similarity=0.242 Sum_probs=53.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.|.+++|+|++|++|..++..+...|++|++++++.++.+.+.+.+ +... ++ |..+.+++...+....
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~l---------Ga~~-vi--~~~~~~~~~~~i~~~~ 225 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKL---------GFDE-AF--NYKEEPDLDAALKRYF 225 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhc---------CCCE-EE--ECCCcccHHHHHHHHC
Confidence 6899999999999999998888888999999998887655443222 2211 12 3322222333333322
Q ss_pred hcCCCeeEEEEcCC
Q psy13409 95 DNESAIHLLINNAG 108 (330)
Q Consensus 95 ~~~g~iDvlInnAG 108 (330)
.+.+|+++.+.|
T Consensus 226 --~~gvD~v~d~vG 237 (348)
T PLN03154 226 --PEGIDIYFDNVG 237 (348)
T ss_pred --CCCcEEEEECCC
Confidence 136899999987
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.021 Score=53.93 Aligned_cols=79 Identities=19% Similarity=0.305 Sum_probs=53.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.|.+++|+|++|++|.+++..+...|++|+++.++.++.+.+. ++ +... + .|..+.+...+.++...
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~-~l---------Ga~~-v--i~~~~~~~~~~~~~~~~ 204 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLK-KL---------GFDV-A--FNYKTVKSLEETLKKAS 204 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-Hc---------CCCE-E--EeccccccHHHHHHHhC
Confidence 6899999999999999998888888999999999887655442 22 2221 1 22233223334433332
Q ss_pred hcCCCeeEEEEcCC
Q psy13409 95 DNESAIHLLINNAG 108 (330)
Q Consensus 95 ~~~g~iDvlInnAG 108 (330)
.+.+|+++.+.|
T Consensus 205 --~~gvdvv~d~~G 216 (325)
T TIGR02825 205 --PDGYDCYFDNVG 216 (325)
T ss_pred --CCCeEEEEECCC
Confidence 136899999887
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.024 Score=52.29 Aligned_cols=81 Identities=19% Similarity=0.345 Sum_probs=54.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
.++++++|+|+++++|.+++..+...|++|++++++.+..+.+ +.+ +.. ...|..+.+..+.+.+..
T Consensus 138 ~~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~~~~~~~~~-~~~---------g~~---~~~~~~~~~~~~~~~~~~ 204 (323)
T cd05276 138 KAGETVLIHGGASGVGTAAIQLAKALGARVIATAGSEEKLEAC-RAL---------GAD---VAINYRTEDFAEEVKEAT 204 (323)
T ss_pred CCCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcCCHHHHHHH-HHc---------CCC---EEEeCCchhHHHHHHHHh
Confidence 3689999999999999999999999999999999987655443 221 111 123333333333333222
Q ss_pred HhcCCCeeEEEEcCCC
Q psy13409 94 LDNESAIHLLINNAGV 109 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~ 109 (330)
. ...+|++|+++|.
T Consensus 205 -~-~~~~d~vi~~~g~ 218 (323)
T cd05276 205 -G-GRGVDVILDMVGG 218 (323)
T ss_pred -C-CCCeEEEEECCch
Confidence 1 2469999999983
|
PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.021 Score=51.37 Aligned_cols=82 Identities=13% Similarity=0.217 Sum_probs=55.0
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecCh------------------hHHHHHHHHHHHhhcccCCCCeE
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSL------------------EKAETAADDIRTSLKDVKDAGEV 73 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~------------------~~l~~~~~~l~~~~~~~~~~~~v 73 (330)
+|++++++|.|+ ||+|..+++.|+..|. ++++++.+. .+.+.+.+.+++. ++..++
T Consensus 25 ~L~~~~V~ViG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~l----np~v~v 99 (212)
T PRK08644 25 KLKKAKVGIAGA-GGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEI----NPFVEI 99 (212)
T ss_pred HHhCCCEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHH----CCCCEE
Confidence 588999999998 9999999999999998 699988862 2333333344332 245566
Q ss_pred EEEEccCCCHHHHHHHHHHHHhcCCCeeEEEEcC
Q psy13409 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNA 107 (330)
Q Consensus 74 ~~i~~Dls~~~si~~l~~~i~~~~g~iDvlInnA 107 (330)
..+...++++ .++.++ ...|++|.+.
T Consensus 100 ~~~~~~i~~~-~~~~~~-------~~~DvVI~a~ 125 (212)
T PRK08644 100 EAHNEKIDED-NIEELF-------KDCDIVVEAF 125 (212)
T ss_pred EEEeeecCHH-HHHHHH-------cCCCEEEECC
Confidence 6666666542 232232 2468877774
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.035 Score=51.09 Aligned_cols=84 Identities=15% Similarity=0.217 Sum_probs=57.1
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecCh-------------------hHHHHHHHHHHHhhcccCCCC
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSL-------------------EKAETAADDIRTSLKDVKDAG 71 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~-------------------~~l~~~~~~l~~~~~~~~~~~ 71 (330)
.+|++++|+|.|+ ||+|..+++.|+..|. ++++++.+. .+.+.+.+.+++. ++..
T Consensus 28 ~~L~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~l----np~v 102 (245)
T PRK05690 28 EKLKAARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARI----NPHI 102 (245)
T ss_pred HHhcCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHH----CCCC
Confidence 3689999999999 9999999999999997 788887642 2333334444433 3456
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHhcCCCeeEEEEcCC
Q psy13409 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAG 108 (330)
Q Consensus 72 ~v~~i~~Dls~~~si~~l~~~i~~~~g~iDvlInnAG 108 (330)
++..+...++. +.++.++ ...|++|.+..
T Consensus 103 ~i~~~~~~i~~-~~~~~~~-------~~~DiVi~~~D 131 (245)
T PRK05690 103 AIETINARLDD-DELAALI-------AGHDLVLDCTD 131 (245)
T ss_pred EEEEEeccCCH-HHHHHHH-------hcCCEEEecCC
Confidence 77777766653 3333333 24688888764
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.091 Score=53.32 Aligned_cols=92 Identities=17% Similarity=0.188 Sum_probs=61.5
Q ss_pred cCcccCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCC---
Q psy13409 5 SGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLS--- 81 (330)
Q Consensus 5 ~~~~~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls--- 81 (330)
.+..++-..+.+.+++|.|+ |.+|...+..+...|+.|++++++..+++.... + +. .++..|..
T Consensus 153 ~g~~taag~vp~akVlViGa-G~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~-l---------Ga--~~v~v~~~e~g 219 (511)
T TIGR00561 153 TGQITAAGKVPPAKVLVIGA-GVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS-M---------GA--EFLELDFKEEG 219 (511)
T ss_pred CCceecCCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-c---------CC--eEEeccccccc
Confidence 34555555677899999998 999999999999999999999999887554322 2 12 23333431
Q ss_pred ----------CHHHHHHHHHHHHhcCCCeeEEEEcCCC
Q psy13409 82 ----------SLKSVRKCAQEILDNESAIHLLINNAGV 109 (330)
Q Consensus 82 ----------~~~si~~l~~~i~~~~g~iDvlInnAG~ 109 (330)
+.+..++..+...+.....|++|+++-+
T Consensus 220 ~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~Tali 257 (511)
T TIGR00561 220 GSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALI 257 (511)
T ss_pred cccccceeecCHHHHHHHHHHHHHHhCCCCEEEECccc
Confidence 1233333333344445678999999933
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.031 Score=53.03 Aligned_cols=78 Identities=19% Similarity=0.315 Sum_probs=51.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
|.+++|+||+|++|.+++......|+ +|+++.++.++.+.+.+++ +..- ++ |..+ +++.+.+.++.
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~l---------Ga~~-vi--~~~~-~~~~~~i~~~~ 221 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSEL---------GFDA-AI--NYKT-DNVAERLRELC 221 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhc---------CCcE-EE--ECCC-CCHHHHHHHHC
Confidence 38999999999999999887778898 7999999887665544332 2211 12 2222 22333333332
Q ss_pred hcCCCeeEEEEcCC
Q psy13409 95 DNESAIHLLINNAG 108 (330)
Q Consensus 95 ~~~g~iDvlInnAG 108 (330)
. +.+|+++++.|
T Consensus 222 ~--~gvd~vid~~g 233 (345)
T cd08293 222 P--EGVDVYFDNVG 233 (345)
T ss_pred C--CCceEEEECCC
Confidence 2 46999999887
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.03 Score=52.39 Aligned_cols=41 Identities=39% Similarity=0.514 Sum_probs=36.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAET 55 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~ 55 (330)
.+.+++|+|+++++|.+++..+...|++|+++.++.++.+.
T Consensus 162 ~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~ 202 (332)
T cd08259 162 KGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLKI 202 (332)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHH
Confidence 58899999999999999999999999999999988765443
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. |
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.037 Score=50.80 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=33.0
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecC
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRS 49 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~ 49 (330)
.+|++.+|+|.|+ ||+|..+++.|+..|. ++++++.+
T Consensus 20 ~~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 20 EALKASRVLIVGL-GGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred HHHhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3688999999998 8999999999999997 78888875
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.028 Score=55.39 Aligned_cols=47 Identities=34% Similarity=0.598 Sum_probs=43.0
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDI 60 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l 60 (330)
+|+++++||.|+ |-+|.-++++|.++|. .|+++.|+.++..++++++
T Consensus 175 ~L~~~~vlvIGA-Gem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~ 222 (414)
T COG0373 175 SLKDKKVLVIGA-GEMGELVAKHLAEKGVKKITIANRTLERAEELAKKL 222 (414)
T ss_pred ccccCeEEEEcc-cHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHh
Confidence 489999999999 8999999999999995 7999999999988888776
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.037 Score=53.72 Aligned_cols=84 Identities=17% Similarity=0.181 Sum_probs=59.1
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecCh-------------------hHHHHHHHHHHHhhcccCCCC
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSL-------------------EKAETAADDIRTSLKDVKDAG 71 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~-------------------~~l~~~~~~l~~~~~~~~~~~ 71 (330)
.+|++.+|+|.|+ ||+|..+++.|+..|. ++++++.+. .+.+.+.+.+++. ++..
T Consensus 24 ~~L~~~~VlivG~-GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~----np~v 98 (355)
T PRK05597 24 QSLFDAKVAVIGA-GGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLAL----NPDV 98 (355)
T ss_pred HHHhCCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHH----CCCc
Confidence 3589999999999 9999999999999998 788888753 3444455555543 3566
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHhcCCCeeEEEEcCC
Q psy13409 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAG 108 (330)
Q Consensus 72 ~v~~i~~Dls~~~si~~l~~~i~~~~g~iDvlInnAG 108 (330)
++..+...++.+ ....++ ...|++|.+..
T Consensus 99 ~v~~~~~~i~~~-~~~~~~-------~~~DvVvd~~d 127 (355)
T PRK05597 99 KVTVSVRRLTWS-NALDEL-------RDADVILDGSD 127 (355)
T ss_pred EEEEEEeecCHH-HHHHHH-------hCCCEEEECCC
Confidence 777777777543 222332 24588888874
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.02 Score=51.02 Aligned_cols=37 Identities=27% Similarity=0.455 Sum_probs=34.0
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecC
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRS 49 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~ 49 (330)
.+|+.++++|.|+ ||+|..++..|++.|. +|++++.+
T Consensus 17 ~~L~~~~V~IvG~-GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 17 QKLEQATVAICGL-GGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHHhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3588999999999 8999999999999998 79999987
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.21 Score=47.25 Aligned_cols=42 Identities=24% Similarity=0.315 Sum_probs=37.2
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAE 54 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~ 54 (330)
.++.+++++|.|. |++|+.++..|...|++|++++|+..+.+
T Consensus 148 ~~l~g~kvlViG~-G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~ 189 (296)
T PRK08306 148 ITIHGSNVLVLGF-GRTGMTLARTLKALGANVTVGARKSAHLA 189 (296)
T ss_pred CCCCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 4578999999998 78999999999999999999999976543
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.045 Score=49.88 Aligned_cols=37 Identities=27% Similarity=0.418 Sum_probs=32.9
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecC
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRS 49 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~ 49 (330)
.+|++.+|+|.|+ ||+|.++++.|+..|. ++++++.+
T Consensus 23 ~~L~~~~VlIiG~-GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 23 EKLKKAKVAVVGV-GGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred HHHhCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 3588999999999 8999999999999997 78888865
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.029 Score=48.85 Aligned_cols=45 Identities=36% Similarity=0.371 Sum_probs=37.9
Q ss_pred cCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHH
Q psy13409 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAE 54 (330)
Q Consensus 9 ~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~ 54 (330)
....++.|+++.|.|. |.||+++|+.|...|++|+..+|+.....
T Consensus 29 ~~~~~l~g~tvgIiG~-G~IG~~vA~~l~~fG~~V~~~d~~~~~~~ 73 (178)
T PF02826_consen 29 FPGRELRGKTVGIIGY-GRIGRAVARRLKAFGMRVIGYDRSPKPEE 73 (178)
T ss_dssp TTBS-STTSEEEEEST-SHHHHHHHHHHHHTT-EEEEEESSCHHHH
T ss_pred CCccccCCCEEEEEEE-cCCcCeEeeeeecCCceeEEecccCChhh
Confidence 3345799999999998 99999999999999999999999987543
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.17 Score=43.62 Aligned_cols=81 Identities=19% Similarity=0.160 Sum_probs=53.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
.+++++|-.|++.|. ++..|++.+.+|+.+++++..++...+.+..... .+..+.++.+|+.+..
T Consensus 22 ~~~~~vLd~G~G~G~---~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~---~~~~~~~~~~d~~~~~--------- 86 (188)
T PRK14968 22 KKGDRVLEVGTGSGI---VAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNI---RNNGVEVIRSDLFEPF--------- 86 (188)
T ss_pred cCCCEEEEEccccCH---HHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCC---CCcceEEEeccccccc---------
Confidence 367889999976665 4555555688999999998877776666544210 1112778888875421
Q ss_pred HhcCCCeeEEEEcCCCCC
Q psy13409 94 LDNESAIHLLINNAGVMM 111 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~ 111 (330)
.+ ..+|+++.|.....
T Consensus 87 ~~--~~~d~vi~n~p~~~ 102 (188)
T PRK14968 87 RG--DKFDVILFNPPYLP 102 (188)
T ss_pred cc--cCceEEEECCCcCC
Confidence 11 25899999887653
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.045 Score=53.43 Aligned_cols=84 Identities=19% Similarity=0.308 Sum_probs=57.7
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecCh-------------------hHHHHHHHHHHHhhcccCCCC
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSL-------------------EKAETAADDIRTSLKDVKDAG 71 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~-------------------~~l~~~~~~l~~~~~~~~~~~ 71 (330)
.+|++.+|+|.|+ ||+|..+++.|+..|. ++++++.+. .+.+.+.+.+.+. ++..
T Consensus 37 ~~l~~~~VliiG~-GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~----np~v 111 (370)
T PRK05600 37 ERLHNARVLVIGA-GGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEI----QPDI 111 (370)
T ss_pred HHhcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHH----CCCC
Confidence 4688999999999 8999999999999997 899988751 3344444444443 3455
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHhcCCCeeEEEEcCC
Q psy13409 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAG 108 (330)
Q Consensus 72 ~v~~i~~Dls~~~si~~l~~~i~~~~g~iDvlInnAG 108 (330)
++..+...++. +.+..+++ ..|++|.+..
T Consensus 112 ~i~~~~~~i~~-~~~~~~~~-------~~DlVid~~D 140 (370)
T PRK05600 112 RVNALRERLTA-ENAVELLN-------GVDLVLDGSD 140 (370)
T ss_pred eeEEeeeecCH-HHHHHHHh-------CCCEEEECCC
Confidence 67777666653 33333332 3588887774
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.033 Score=52.40 Aligned_cols=37 Identities=24% Similarity=0.348 Sum_probs=33.3
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecC
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRS 49 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~ 49 (330)
.+|++.+|+|.|+ ||+|..++..|+..|. ++.++|.+
T Consensus 23 ~kL~~s~VlIvG~-GGLGs~va~~LA~aGVG~i~lvD~D 60 (287)
T PRK08223 23 QRLRNSRVAIAGL-GGVGGIHLLTLARLGIGKFTIADFD 60 (287)
T ss_pred HHHhcCCEEEECC-CHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 3689999999999 8999999999999998 78888875
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.02 Score=49.64 Aligned_cols=40 Identities=30% Similarity=0.374 Sum_probs=35.6
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChh
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLE 51 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~ 51 (330)
.++.||+++|.|++.-+|..+++.|.++|++|+++.|+.+
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~ 79 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTK 79 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCch
Confidence 4689999999999656799999999999999999999854
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.038 Score=56.29 Aligned_cols=47 Identities=19% Similarity=0.401 Sum_probs=41.2
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDI 60 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l 60 (330)
++.+++++|.|+ |.+|..+++.|...|+ +|+++.|+.++.+...+.+
T Consensus 263 ~l~~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~ 310 (519)
T PLN00203 263 SHASARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEF 310 (519)
T ss_pred CCCCCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh
Confidence 488999999999 9999999999999997 7999999998877665543
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.032 Score=55.38 Aligned_cols=46 Identities=37% Similarity=0.663 Sum_probs=39.9
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADD 59 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~ 59 (330)
++.+++++|.|+ |.+|..+++.|...|+ +|++++|+.++.....+.
T Consensus 179 ~~~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~ 225 (423)
T PRK00045 179 DLSGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTLERAEELAEE 225 (423)
T ss_pred CccCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH
Confidence 478999999998 9999999999999997 799999998876655544
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.0047 Score=55.29 Aligned_cols=39 Identities=28% Similarity=0.462 Sum_probs=35.3
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChh
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLE 51 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~ 51 (330)
.+++||+++|.|| |.+|..-++.|++.|++|++++.+..
T Consensus 5 l~l~gk~vlVvGg-G~va~rk~~~Ll~~ga~VtVvsp~~~ 43 (205)
T TIGR01470 5 ANLEGRAVLVVGG-GDVALRKARLLLKAGAQLRVIAEELE 43 (205)
T ss_pred EEcCCCeEEEECc-CHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 4689999999999 89999999999999999999987654
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.038 Score=49.16 Aligned_cols=36 Identities=17% Similarity=0.351 Sum_probs=31.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecC
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRS 49 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~ 49 (330)
+|++.+++|.|+ ||+|.++++.|+..|. ++++++.+
T Consensus 16 ~L~~s~VlviG~-gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 16 KLRSAKVLIIGA-GALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred HHhhCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEECC
Confidence 578899999988 6699999999999998 58888765
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >KOG1198|consensus | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.039 Score=53.40 Aligned_cols=81 Identities=17% Similarity=0.257 Sum_probs=51.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
-+|+++||.||+||+|.+.+......|+.++++.++.+.. ++.+.+ +. -...|..+++-++...+..
T Consensus 156 ~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~-~l~k~l---------GA---d~vvdy~~~~~~e~~kk~~ 222 (347)
T KOG1198|consen 156 SKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKL-ELVKKL---------GA---DEVVDYKDENVVELIKKYT 222 (347)
T ss_pred CCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchH-HHHHHc---------CC---cEeecCCCHHHHHHHHhhc
Confidence 3789999999999999999888888895444444544432 223332 11 1234666644333332221
Q ss_pred HhcCCCeeEEEEcCCCC
Q psy13409 94 LDNESAIHLLINNAGVM 110 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~ 110 (330)
.+.+|+++.|.|..
T Consensus 223 ---~~~~DvVlD~vg~~ 236 (347)
T KOG1198|consen 223 ---GKGVDVVLDCVGGS 236 (347)
T ss_pred ---CCCccEEEECCCCC
Confidence 56799999999964
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.041 Score=54.53 Aligned_cols=46 Identities=33% Similarity=0.643 Sum_probs=39.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCC-CEEEEEecChhHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRG-ARVIMACRSLEKAETAADD 59 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G-~~Vil~~R~~~~l~~~~~~ 59 (330)
++.+++++|.|+ |.+|..+++.|...| .+|++++|+.++..+..+.
T Consensus 177 ~l~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~ 223 (417)
T TIGR01035 177 SLKGKKALLIGA-GEMGELVAKHLLRKGVGKILIANRTYERAEDLAKE 223 (417)
T ss_pred CccCCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH
Confidence 478999999998 999999999999999 6899999998776655543
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.035 Score=55.81 Aligned_cols=78 Identities=19% Similarity=0.213 Sum_probs=53.8
Q ss_pred CCCCCEEEEEcCC----------------CchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEE
Q psy13409 13 RLDGKTAIVTGSN----------------TGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76 (330)
Q Consensus 13 ~~~gk~aLITGas----------------~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i 76 (330)
+|+||++|||+|. |-.|.+||+.+...|++|+++.-... + . ....+..+
T Consensus 253 ~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~-~-------~-------~p~~v~~i 317 (475)
T PRK13982 253 PLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVD-L-------A-------DPQGVKVI 317 (475)
T ss_pred ccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcC-C-------C-------CCCCceEE
Confidence 5999999999875 78999999999999999999863321 0 0 12334443
Q ss_pred EccCCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCC
Q psy13409 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMM 111 (330)
Q Consensus 77 ~~Dls~~~si~~l~~~i~~~~g~iDvlInnAG~~~ 111 (330)
++....+ +.+.+.+.+. .|++|++|++.-
T Consensus 318 --~V~ta~e---M~~av~~~~~-~Di~I~aAAVaD 346 (475)
T PRK13982 318 --HVESARQ---MLAAVEAALP-ADIAIFAAAVAD 346 (475)
T ss_pred --EecCHHH---HHHHHHhhCC-CCEEEEeccccc
Confidence 3444444 4444444443 599999999764
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.037 Score=44.12 Aligned_cols=71 Identities=17% Similarity=0.255 Sum_probs=51.8
Q ss_pred EEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhcCC
Q psy13409 19 AIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNES 98 (330)
Q Consensus 19 aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~~g 98 (330)
++|.|. +.+|+.+++.|.+.+.+|++++++++..++..+. + +.++.+|.++++.++++- ..
T Consensus 1 vvI~G~-g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----------~--~~~i~gd~~~~~~l~~a~------i~ 61 (116)
T PF02254_consen 1 VVIIGY-GRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----------G--VEVIYGDATDPEVLERAG------IE 61 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----------T--SEEEES-TTSHHHHHHTT------GG
T ss_pred eEEEcC-CHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----------c--cccccccchhhhHHhhcC------cc
Confidence 578888 6899999999999777999999999875554321 2 668899999988766551 12
Q ss_pred CeeEEEEcCC
Q psy13409 99 AIHLLINNAG 108 (330)
Q Consensus 99 ~iDvlInnAG 108 (330)
..+.+|....
T Consensus 62 ~a~~vv~~~~ 71 (116)
T PF02254_consen 62 KADAVVILTD 71 (116)
T ss_dssp CESEEEEESS
T ss_pred ccCEEEEccC
Confidence 4677776664
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.061 Score=46.82 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=28.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHCCC-EEEEEecCh
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRGA-RVIMACRSL 50 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~ 50 (330)
+++|.|+ ||+|..+++.|++.|. ++++++.+.
T Consensus 1 ~VlViG~-GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 4788887 9999999999999998 699998864
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.19 Score=50.52 Aligned_cols=81 Identities=17% Similarity=0.174 Sum_probs=53.8
Q ss_pred cCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChh-HHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHH
Q psy13409 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLE-KAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVR 87 (330)
Q Consensus 9 ~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~-~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~ 87 (330)
.....+++++++|.|+ |++|.++|+.|.++|++|++++++.. ......+.+++. + +.++..+-..
T Consensus 9 ~~~~~~~~~~v~viG~-G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~------g--v~~~~~~~~~----- 74 (480)
T PRK01438 9 SWHSDWQGLRVVVAGL-GVSGFAAADALLELGARVTVVDDGDDERHRALAAILEAL------G--ATVRLGPGPT----- 74 (480)
T ss_pred hcccCcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHc------C--CEEEECCCcc-----
Confidence 3445678999999998 88999999999999999999986653 222333344331 2 3333222111
Q ss_pred HHHHHHHhcCCCeeEEEEcCCCCC
Q psy13409 88 KCAQEILDNESAIHLLINNAGVMM 111 (330)
Q Consensus 88 ~l~~~i~~~~g~iDvlInnAG~~~ 111 (330)
.....|.+|..+|+..
T Consensus 75 --------~~~~~D~Vv~s~Gi~~ 90 (480)
T PRK01438 75 --------LPEDTDLVVTSPGWRP 90 (480)
T ss_pred --------ccCCCCEEEECCCcCC
Confidence 0124799999999864
|
|
| >PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.014 Score=43.55 Aligned_cols=37 Identities=30% Similarity=0.464 Sum_probs=23.9
Q ss_pred CCCC-CEEEEEcCCCchHHH--HHHHHHHCCCEEEEEecCh
Q psy13409 13 RLDG-KTAIVTGSNTGIGKC--TANELAKRGARVIMACRSL 50 (330)
Q Consensus 13 ~~~g-k~aLITGas~gIG~a--ia~~L~~~G~~Vil~~R~~ 50 (330)
.++| |+|||+|+|+|.|++ |+..| ..|++.+-+....
T Consensus 35 ~~~GpK~VLViGaStGyGLAsRIa~aF-g~gA~TiGV~fEk 74 (78)
T PF12242_consen 35 KINGPKKVLVIGASTGYGLASRIAAAF-GAGADTIGVSFEK 74 (78)
T ss_dssp --TS-SEEEEES-SSHHHHHHHHHHHH-CC--EEEEEE---
T ss_pred CCCCCceEEEEecCCcccHHHHHHHHh-cCCCCEEEEeecc
Confidence 3466 999999999999999 66666 5677877776543
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.13 Score=48.88 Aligned_cols=118 Identities=19% Similarity=0.171 Sum_probs=67.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCC--EEEEEecCh--hHHHHHHHHHHHhhcccCCCCeEEEEEccCC-CHHHHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGA--RVIMACRSL--EKAETAADDIRTSLKDVKDAGEVVIRQLDLS-SLKSVRKCAQ 91 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~--~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls-~~~si~~l~~ 91 (330)
+++.|+|++|.+|..++..|+..|. .|++++|+. +.++....++...... .+.... +..+ +.+ .
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~--~~~~~~---i~~~~d~~---~--- 69 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAA--AGIDAE---IKISSDLS---D--- 69 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhc--cCCCcE---EEECCCHH---H---
Confidence 4789999999999999999999986 499999964 4443333333321100 011111 1111 211 1
Q ss_pred HHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCC
Q psy13409 92 EILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLA 158 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~ 158 (330)
...-|++|.++|....+ ..+. .+.+..|..- ++.+.+.+.+.. .+.+|++++..
T Consensus 70 -----l~~aDiViitag~p~~~-~~~r---~dl~~~n~~i----~~~~~~~i~~~~~~~~viv~~npv 124 (309)
T cd05294 70 -----VAGSDIVIITAGVPRKE-GMSR---LDLAKKNAKI----VKKYAKQIAEFAPDTKILVVTNPV 124 (309)
T ss_pred -----hCCCCEEEEecCCCCCC-CCCH---HHHHHHHHHH----HHHHHHHHHHHCCCeEEEEeCCch
Confidence 13459999999975422 2222 3334455554 555555554443 46777777643
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.03 Score=56.52 Aligned_cols=47 Identities=28% Similarity=0.434 Sum_probs=40.6
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADD 59 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~ 59 (330)
.++++++++|+|+ ||+|++++..|++.|++|++.+|+.++.++..+.
T Consensus 328 ~~~~~k~vlIiGa-GgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~ 374 (477)
T PRK09310 328 IPLNNQHVAIVGA-GGAAKAIATTLARAGAELLIFNRTKAHAEALASR 374 (477)
T ss_pred CCcCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 4578999999997 7999999999999999999999998776665543
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.38 Score=45.88 Aligned_cols=115 Identities=14% Similarity=0.145 Sum_probs=72.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCC--EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGA--RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
..++.|+|+ |.+|..++..|+..|. .+++++.+.+.+.....+++...... ...++.. .. +.+.
T Consensus 3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~-~~~~v~~-~~---dy~~-------- 68 (312)
T cd05293 3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFL-KNPKIEA-DK---DYSV-------- 68 (312)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccC-CCCEEEE-CC---CHHH--------
Confidence 357899996 9999999999998885 69999999887776666666543211 1112221 11 2221
Q ss_pred HhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEc
Q psy13409 94 LDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLS 155 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iS 155 (330)
...-|++|.+||....+ .++. .+.+..|.- +++.+.+.+.+.. .+.+|++|
T Consensus 69 ---~~~adivvitaG~~~k~-g~~R---~dll~~N~~----i~~~~~~~i~~~~p~~~vivvs 120 (312)
T cd05293 69 ---TANSKVVIVTAGARQNE-GESR---LDLVQRNVD----IFKGIIPKLVKYSPNAILLVVS 120 (312)
T ss_pred ---hCCCCEEEECCCCCCCC-CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEcc
Confidence 12459999999986542 2333 333444444 4677777776665 45566665
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.06 Score=51.78 Aligned_cols=73 Identities=27% Similarity=0.356 Sum_probs=52.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.|++++|+|.+ |+|...+......|++|++++|++++++...+. +.... .|-++++.++.+.+.
T Consensus 166 pG~~V~I~G~G-GlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~l----------GAd~~---i~~~~~~~~~~~~~~-- 229 (339)
T COG1064 166 PGKWVAVVGAG-GLGHMAVQYAKAMGAEVIAITRSEEKLELAKKL----------GADHV---INSSDSDALEAVKEI-- 229 (339)
T ss_pred CCCEEEEECCc-HHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHh----------CCcEE---EEcCCchhhHHhHhh--
Confidence 59999999997 999988887777999999999999987655432 22222 233344444444331
Q ss_pred hcCCCeeEEEEcCC
Q psy13409 95 DNESAIHLLINNAG 108 (330)
Q Consensus 95 ~~~g~iDvlInnAG 108 (330)
.|++|++++
T Consensus 230 -----~d~ii~tv~ 238 (339)
T COG1064 230 -----ADAIIDTVG 238 (339)
T ss_pred -----CcEEEECCC
Confidence 699999997
|
|
| >COG3007 Uncharacterized paraquat-inducible protein B [Function unknown] | Back alignment and domain information |
|---|
Probab=95.61 E-value=1.3 Score=41.73 Aligned_cols=222 Identities=15% Similarity=0.066 Sum_probs=122.8
Q ss_pred CEEEEEcCCCchHHHH--HHHHHHCCCEEEEEec-------ChhH---H-HHHHHHHHHhhcccCCCCeEEEEEccCCCH
Q psy13409 17 KTAIVTGSNTGIGKCT--ANELAKRGARVIMACR-------SLEK---A-ETAADDIRTSLKDVKDAGEVVIRQLDLSSL 83 (330)
Q Consensus 17 k~aLITGas~gIG~ai--a~~L~~~G~~Vil~~R-------~~~~---l-~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~ 83 (330)
|+|||.|+|+|.|++. +..|- .|+..+.+.- ++.. . +...++..++ .+--..-+..|.-+-
T Consensus 42 KkVLviGaSsGyGLa~RIsaaFG-~gAdTiGVffE~pgte~~~gtagwyn~~~f~~~A~~-----kGlyAksingDaFS~ 115 (398)
T COG3007 42 KKVLVIGASSGYGLAARISAAFG-PGADTIGVFFERPGTERKPGTAGWYNNAAFKKFAKQ-----KGLYAKSINGDAFSD 115 (398)
T ss_pred ceEEEEecCCcccHHHHHHHHhC-CCCceeeEEeecCCccCCCcchhhhHHHHHHHHHHh-----cCceeeecccchhhH
Confidence 8999999999999873 33333 3555444332 1110 0 0011111111 233445677888887
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEcCCCCCCCC------------------------------------CCChhhHHHhHHH
Q psy13409 84 KSVRKCAQEILDNESAIHLLINNAGVMMCPR------------------------------------QLTEDGYELQFAT 127 (330)
Q Consensus 84 ~si~~l~~~i~~~~g~iDvlInnAG~~~~~~------------------------------------~~~~~~~~~~l~v 127 (330)
+--+..++.+++.+|.+|.+|+.-+.....+ ..+.+++..+..
T Consensus 116 e~k~kvIe~Ik~~~g~vDlvvYSlAsp~Rk~pktgev~~SalKpIg~a~~~~~ldt~kd~i~e~~lepAseqEI~~Tv~- 194 (398)
T COG3007 116 EMKQKVIEAIKQDFGKVDLVVYSLASPRRKHPKTGEVFRSALKPIGEAVSGRTLDTEKDVIIEATLEPASEQEIADTVA- 194 (398)
T ss_pred HHHHHHHHHHHHhhccccEEEEeccCccccCCCcchhhHhhhcchhhhccccccccccceeeeeecccccHHHHHHHHH-
Confidence 7778888889999999999998876332110 112333333322
Q ss_pred HHHHH--HH-HHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhccc
Q psy13409 128 NHLGH--YL-FTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVN 204 (330)
Q Consensus 128 N~~g~--~~-l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~ 204 (330)
++|- |. .+.+++..=.-..+.+-|-+|-+...... +....+.-+.+|.-++.-++.+...++
T Consensus 195 -VMGGeDWq~WidaLl~advlaeg~kTiAfsYiG~~iT~------------~IYw~GtiG~AK~DLd~~~~~inekLa-- 259 (398)
T COG3007 195 -VMGGEDWQMWIDALLEADVLAEGAKTIAFSYIGEKITH------------PIYWDGTIGRAKKDLDQKSLAINEKLA-- 259 (398)
T ss_pred -hhCcchHHHHHHHHHhccccccCceEEEEEecCCcccc------------ceeeccccchhhhcHHHHHHHHHHHHH--
Confidence 2221 11 12222211111124566666665543332 113445678999999999888888887
Q ss_pred ccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhh
Q psy13409 205 FSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGT 284 (330)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~ 284 (330)
. .+=+.+..---.|-|..+...+..+...
T Consensus 260 ------------------------------------------------~---~gG~A~vsVlKavVTqASsaIP~~plYl 288 (398)
T COG3007 260 ------------------------------------------------A---LGGGARVSVLKAVVTQASSAIPMMPLYL 288 (398)
T ss_pred ------------------------------------------------h---cCCCeeeeehHHHHhhhhhccccccHHH
Confidence 2 2224333333345577776666555555
Q ss_pred HHHHHHhhhhhccChHHHHHHHHHhhccc
Q psy13409 285 AWLYQRVGGLFIKSPLQGAQTTLYCALDK 313 (330)
Q Consensus 285 ~~~~~~~~~~~~~~~~e~a~~~~~l~~~~ 313 (330)
..++.-++. -++-|-+-+-+-.|.++.
T Consensus 289 a~lfkvMKe--kg~HEgcIeQi~rlfse~ 315 (398)
T COG3007 289 AILFKVMKE--KGTHEGCIEQIDRLFSEK 315 (398)
T ss_pred HHHHHHHHH--cCcchhHHHHHHHHHHHH
Confidence 555555555 467777777777776554
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.099 Score=49.03 Aligned_cols=42 Identities=24% Similarity=0.342 Sum_probs=36.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETA 56 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~ 56 (330)
.|.+++|+||+|++|.+++..+...|++|+++.++.++.+.+
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l 184 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWL 184 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 689999999999999999888888999999999888765444
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.042 Score=54.53 Aligned_cols=60 Identities=20% Similarity=0.165 Sum_probs=45.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRK 88 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~ 88 (330)
++++|.|+ |.+|.++++.|.++|+.|++++++.+..+...+. ..+.++.+|.++.+.+++
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~-----------~~~~~~~gd~~~~~~l~~ 60 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR-----------LDVRTVVGNGSSPDVLRE 60 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh-----------cCEEEEEeCCCCHHHHHH
Confidence 36889998 9999999999999999999999998876554321 235566677776554433
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.059 Score=51.27 Aligned_cols=46 Identities=35% Similarity=0.623 Sum_probs=39.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDI 60 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l 60 (330)
+.+++++|.|+ |.+|..+++.|...|. .|++++|+.++..+.++.+
T Consensus 176 l~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~ 222 (311)
T cd05213 176 LKGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL 222 (311)
T ss_pred ccCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc
Confidence 78999999998 9999999999998774 7999999988776665543
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.28 Score=46.93 Aligned_cols=119 Identities=16% Similarity=0.124 Sum_probs=70.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCC-CEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRG-ARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G-~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
++.+++.|+|| |.+|..++..++..| ..|++++++.+.++...-++...... .+...... . -++ .+.+
T Consensus 3 ~~~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~--~~~~~~i~-~-~~d---~~~l--- 71 (319)
T PTZ00117 3 VKRKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTL--VGSNINIL-G-TNN---YEDI--- 71 (319)
T ss_pred CCCcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccc--cCCCeEEE-e-CCC---HHHh---
Confidence 56789999997 889999999999999 68999999886644322222211100 11111111 1 112 2211
Q ss_pred HHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCC-CeEEEEcC
Q psy13409 93 ILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAP-ARIINLSS 156 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~-g~IV~iSS 156 (330)
..-|++|.++|....+ ..+ ..+.+..|. .+.+.+.+.+.+... +.+|++|-
T Consensus 72 -----~~ADiVVitag~~~~~-g~~---r~dll~~n~----~i~~~i~~~i~~~~p~a~vivvsN 123 (319)
T PTZ00117 72 -----KDSDVVVITAGVQRKE-EMT---REDLLTING----KIMKSVAESVKKYCPNAFVICVTN 123 (319)
T ss_pred -----CCCCEEEECCCCCCCC-CCC---HHHHHHHHH----HHHHHHHHHHHHHCCCeEEEEecC
Confidence 2349999999975432 222 244555555 456677777766654 44666643
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.21 Score=49.90 Aligned_cols=115 Identities=15% Similarity=0.060 Sum_probs=74.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHC-------CC--EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKR-------GA--RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVR 87 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~-------G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~ 87 (330)
-+|.|+|++|.+|.+++..|+.. |. ++++++++.+.++...-+++....... .++.+. . .+.++
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~--~~v~i~-~--~~ye~-- 173 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLL--REVSIG-I--DPYEV-- 173 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhc--CceEEe-c--CCHHH--
Confidence 46889999999999999999988 65 799999999988887777765431111 123211 1 12221
Q ss_pred HHHHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhh-hC-CCeEEEEc
Q psy13409 88 KCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIK-SA-PARIINLS 155 (330)
Q Consensus 88 ~l~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~-~~-~g~IV~iS 155 (330)
+..-|++|..||....+ .++ -.+.++.|..= ++.+.+.+.+ .+ .+.||++|
T Consensus 174 ---------~kdaDiVVitAG~prkp-G~t---R~dLl~~N~~I----~k~i~~~I~~~a~p~~ivIVVs 226 (444)
T PLN00112 174 ---------FQDAEWALLIGAKPRGP-GME---RADLLDINGQI----FAEQGKALNEVASRNVKVIVVG 226 (444)
T ss_pred ---------hCcCCEEEECCCCCCCC-CCC---HHHHHHHHHHH----HHHHHHHHHHhcCCCeEEEEcC
Confidence 23469999999985432 222 34445555544 7777777776 34 45555555
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.092 Score=46.66 Aligned_cols=36 Identities=22% Similarity=0.356 Sum_probs=31.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecC
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRS 49 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~ 49 (330)
+|++++++|.|+ ||+|.++++.|+..|. ++.+++..
T Consensus 18 ~L~~s~VlIiG~-gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 18 RLRSARILLIGL-KGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HHHhCcEEEEcC-CHHHHHHHHHHHHcCCCEEEEEECC
Confidence 578999999987 6799999999999998 68888754
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.36 Score=46.17 Aligned_cols=121 Identities=17% Similarity=0.126 Sum_probs=69.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
++.+++.|.|+ |.+|..++..++..|. .|++++.+++.+....-++...... .+....+.. .+|.+ .+
T Consensus 4 ~~~~KI~IIGa-G~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~--~~~~~~I~~--~~d~~---~l--- 72 (321)
T PTZ00082 4 IKRRKISLIGS-GNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVI--AGSNSKVIG--TNNYE---DI--- 72 (321)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhc--cCCCeEEEE--CCCHH---Hh---
Confidence 45689999996 8899999999999995 8999999987543222111111111 111122221 02221 11
Q ss_pred HHhcCCCeeEEEEcCCCCCCCCC--CChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCC-CeEEEEc
Q psy13409 93 ILDNESAIHLLINNAGVMMCPRQ--LTEDGYELQFATNHLGHYLFTLLLLPRIIKSAP-ARIINLS 155 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~~~--~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~-g~IV~iS 155 (330)
..-|++|.++|....+.. .+++ ..+.+..|. .+.+.+.+.+.+... +.+|++|
T Consensus 73 -----~~aDiVI~tag~~~~~~~~~~~~~-r~~~l~~n~----~i~~~i~~~i~~~~p~a~~iv~s 128 (321)
T PTZ00082 73 -----AGSDVVIVTAGLTKRPGKSDKEWN-RDDLLPLNA----KIMDEVAEGIKKYCPNAFVIVIT 128 (321)
T ss_pred -----CCCCEEEECCCCCCCCCCCcCCCC-HHHHHHHHH----HHHHHHHHHHHHHCCCeEEEEec
Confidence 245999999998653321 1112 233444553 457777777776654 4556555
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.13 Score=42.77 Aligned_cols=78 Identities=22% Similarity=0.258 Sum_probs=50.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHCCC-EEEEEecCh-------------------hHHHHHHHHHHHhhcccCCCCeEEEEE
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRGA-RVIMACRSL-------------------EKAETAADDIRTSLKDVKDAGEVVIRQ 77 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~-------------------~~l~~~~~~l~~~~~~~~~~~~v~~i~ 77 (330)
+++|.|+ ||+|.++++.|+..|. ++.+++.+. .+.+.+.+.+++. ++..++..+.
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~----~p~v~i~~~~ 75 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNEL----NPGVNVTAVP 75 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHH----CCCcEEEEEe
Confidence 4788997 9999999999999998 788887541 2333334444443 2455666666
Q ss_pred ccCCCHHHHHHHHHHHHhcCCCeeEEEEcCC
Q psy13409 78 LDLSSLKSVRKCAQEILDNESAIHLLINNAG 108 (330)
Q Consensus 78 ~Dls~~~si~~l~~~i~~~~g~iDvlInnAG 108 (330)
.++..... . +.....|++|.+..
T Consensus 76 ~~~~~~~~-~-------~~~~~~diVi~~~d 98 (143)
T cd01483 76 EGISEDNL-D-------DFLDGVDLVIDAID 98 (143)
T ss_pred eecChhhH-H-------HHhcCCCEEEECCC
Confidence 66654321 1 12235688887775
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.082 Score=48.91 Aligned_cols=114 Identities=21% Similarity=0.163 Sum_probs=69.9
Q ss_pred EEEEcCCCchHHHHHHHHHHCC----CEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 19 AIVTGSNTGIGKCTANELAKRG----ARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 19 aLITGas~gIG~aia~~L~~~G----~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
+.|+|++|.+|..++..|+..| .+|++.+++.++++....+++...... ...++.. ++ +.+..+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-~~~~i~~-----~~--d~~~~~---- 68 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL-ADIKVSI-----TD--DPYEAF---- 68 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc-cCcEEEE-----CC--chHHHh----
Confidence 4689998899999999999999 689999999988888777776543221 1122221 11 111122
Q ss_pred hcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEc
Q psy13409 95 DNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLS 155 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iS 155 (330)
..-|++|..+|....+. .+ -...+..|. -+.+.+.+.+.+.. .+.+|++|
T Consensus 69 ---~~aDiVv~t~~~~~~~g-~~---r~~~~~~n~----~i~~~i~~~i~~~~p~a~~i~~t 119 (263)
T cd00650 69 ---KDADVVIITAGVGRKPG-MG---RLDLLKRNV----PIVKEIGDNIEKYSPDAWIIVVS 119 (263)
T ss_pred ---CCCCEEEECCCCCCCcC-CC---HHHHHHHHH----HHHHHHHHHHHHHCCCeEEEEec
Confidence 24599999999765431 11 122233333 34566666666554 35555554
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.099 Score=48.35 Aligned_cols=40 Identities=33% Similarity=0.470 Sum_probs=36.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAE 54 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~ 54 (330)
.|++++|+|+++++|.+++..+...|++|+++.++.+..+
T Consensus 139 ~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~ 178 (325)
T TIGR02824 139 AGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEKCA 178 (325)
T ss_pred CCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 6899999999999999999999999999999999876644
|
Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized. |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.044 Score=51.62 Aligned_cols=43 Identities=26% Similarity=0.355 Sum_probs=38.3
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAET 55 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~ 55 (330)
.++.|++++|+|. |++|+++++.|...|++|++.+|+.+++.+
T Consensus 147 ~~l~gk~v~IiG~-G~iG~avA~~L~~~G~~V~v~~R~~~~~~~ 189 (287)
T TIGR02853 147 FTIHGSNVMVLGF-GRTGMTIARTFSALGARVFVGARSSADLAR 189 (287)
T ss_pred CCCCCCEEEEEcC-hHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 4789999999999 779999999999999999999999876443
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.11 Score=49.51 Aligned_cols=77 Identities=17% Similarity=0.240 Sum_probs=51.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
..|++++|+|+ |++|...+..+...|+ +|+++++++++++.+. ++ +... + .|..+. ++..
T Consensus 168 ~~g~~VlV~G~-G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~-~l---------Ga~~-v--i~~~~~-~~~~---- 228 (343)
T PRK09880 168 LQGKRVFVSGV-GPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAR-EM---------GADK-L--VNPQND-DLDH---- 228 (343)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHH-Hc---------CCcE-E--ecCCcc-cHHH----
Confidence 46899999986 8999999988888898 6889999987765432 22 2221 1 233332 2222
Q ss_pred HHhcCCCeeEEEEcCCC
Q psy13409 93 ILDNESAIHLLINNAGV 109 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~ 109 (330)
+.+..+.+|++|.++|.
T Consensus 229 ~~~~~g~~D~vid~~G~ 245 (343)
T PRK09880 229 YKAEKGYFDVSFEVSGH 245 (343)
T ss_pred HhccCCCCCEEEECCCC
Confidence 22223468999999983
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.57 Score=45.43 Aligned_cols=114 Identities=14% Similarity=0.156 Sum_probs=71.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCC--EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGA--RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
+++.|+|+ |.||.+++..|+..+. .+++++.+.+.+.....+++...... + ...+.. + .+.++
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~--~-~~~i~~-~-~dy~~--------- 102 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFL--P-RTKILA-S-TDYAV--------- 102 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcC--C-CCEEEe-C-CCHHH---------
Confidence 69999997 9999999999998885 69999999887776666665532111 1 122211 0 12111
Q ss_pred hcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEc
Q psy13409 95 DNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLS 155 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iS 155 (330)
...-|++|..||....+ .++. .+.+..|.. +++.+.+.+.+.. .+.+|++|
T Consensus 103 --~~daDiVVitAG~~~k~-g~tR---~dll~~N~~----I~~~i~~~I~~~~p~~ivivvt 154 (350)
T PLN02602 103 --TAGSDLCIVTAGARQIP-GESR---LNLLQRNVA----LFRKIIPELAKYSPDTILLIVS 154 (350)
T ss_pred --hCCCCEEEECCCCCCCc-CCCH---HHHHHHHHH----HHHHHHHHHHHHCCCeEEEEec
Confidence 12459999999986433 2232 233444443 4666666666655 45566665
|
|
| >cd05288 PGDH Prostaglandin dehydrogenases | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.1 Score=48.99 Aligned_cols=42 Identities=26% Similarity=0.298 Sum_probs=37.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETA 56 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~ 56 (330)
.|.+++|.|+++++|.+++..+...|++|+++.++.++.+.+
T Consensus 145 ~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~ 186 (329)
T cd05288 145 PGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWL 186 (329)
T ss_pred CCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 689999999999999999999999999999999888765543
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.2 Score=47.99 Aligned_cols=114 Identities=12% Similarity=0.008 Sum_probs=67.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHCCC-------EEEEEecCh--hHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHH
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRGA-------RVIMACRSL--EKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRK 88 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G~-------~Vil~~R~~--~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~ 88 (330)
++.|+|++|.+|.+++..|+..|. .+++++.+. +++.....++....... ...+... . .+.+
T Consensus 5 KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~--~~~~~i~-~--~~~~---- 75 (323)
T TIGR01759 5 RVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPL--LAGVVAT-T--DPEE---- 75 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccc--cCCcEEe-c--ChHH----
Confidence 688999999999999999998884 799999965 33444444444321000 0111111 1 1111
Q ss_pred HHHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCC--CeEEEEc
Q psy13409 89 CAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAP--ARIINLS 155 (330)
Q Consensus 89 l~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~--g~IV~iS 155 (330)
....-|++|.+||....+ .++ -.+.+..|..- ++.+.+.+.+... +.+|++|
T Consensus 76 -------~~~daDvVVitAG~~~k~-g~t---R~dll~~Na~i----~~~i~~~i~~~~~~~~iiivvs 129 (323)
T TIGR01759 76 -------AFKDVDAALLVGAFPRKP-GME---RADLLSKNGKI----FKEQGKALNKVAKKDVKVLVVG 129 (323)
T ss_pred -------HhCCCCEEEEeCCCCCCC-CCc---HHHHHHHHHHH----HHHHHHHHHhhCCCCeEEEEeC
Confidence 123459999999986432 222 34445555554 7777777777653 4455554
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.047 Score=45.57 Aligned_cols=57 Identities=19% Similarity=0.040 Sum_probs=45.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLK 84 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~ 84 (330)
.+++++++.|.+ -|.++|..|.+.|+.|++++.++...+.+.+. .+.++..|+.+++
T Consensus 15 ~~~~kileIG~G--fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~------------~~~~v~dDlf~p~ 71 (134)
T PRK04148 15 GKNKKIVELGIG--FYFKVAKKLKESGFDVIVIDINEKAVEKAKKL------------GLNAFVDDLFNPN 71 (134)
T ss_pred ccCCEEEEEEec--CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh------------CCeEEECcCCCCC
Confidence 356889999986 67889999999999999999999865554321 3578888998755
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.089 Score=50.92 Aligned_cols=38 Identities=32% Similarity=0.386 Sum_probs=35.2
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL 50 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~ 50 (330)
..+.||++.|.|- |.||+++|+.|...|++|+..+|+.
T Consensus 155 ~~l~gktvGIiG~-G~IG~~vA~~l~afG~~V~~~dr~~ 192 (347)
T PLN02928 155 DTLFGKTVFILGY-GAIGIELAKRLRPFGVKLLATRRSW 192 (347)
T ss_pred cCCCCCEEEEECC-CHHHHHHHHHHhhCCCEEEEECCCC
Confidence 3699999999999 9999999999999999999999874
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.054 Score=45.56 Aligned_cols=42 Identities=29% Similarity=0.328 Sum_probs=37.9
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEK 52 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~ 52 (330)
..+++||.++|.|.+.-+|..++..|.++|++|++++++...
T Consensus 23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~ 64 (140)
T cd05212 23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQ 64 (140)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcC
Confidence 457999999999999999999999999999999999876543
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.11 Score=49.81 Aligned_cols=115 Identities=11% Similarity=0.002 Sum_probs=66.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCC-------EEEEEecChh--HHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGA-------RVIMACRSLE--KAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVR 87 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~-------~Vil~~R~~~--~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~ 87 (330)
+++.|+|++|.+|..++..|+..|. .+++++++.. ++....-++....... ..++.+. . .+
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~--~~~~~i~-~--~~----- 74 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPL--LAGVVIT-D--DP----- 74 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhh--cCCcEEe-c--Ch-----
Confidence 4789999999999999999998764 6999998543 2333333333221000 0112111 1 11
Q ss_pred HHHHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC--CCeEEEEc
Q psy13409 88 KCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA--PARIINLS 155 (330)
Q Consensus 88 ~l~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~--~g~IV~iS 155 (330)
.+....-|++|.+||....+ .+ +-.+.+..|.. +++.+.+.+.+.. .+.+|++|
T Consensus 75 ------y~~~~daDiVVitaG~~~k~-g~---tR~dll~~Na~----i~~~i~~~i~~~~~~~~iiivvs 130 (326)
T PRK05442 75 ------NVAFKDADVALLVGARPRGP-GM---ERKDLLEANGA----IFTAQGKALNEVAARDVKVLVVG 130 (326)
T ss_pred ------HHHhCCCCEEEEeCCCCCCC-CC---cHHHHHHHHHH----HHHHHHHHHHHhCCCCeEEEEeC
Confidence 11223469999999975432 22 23444455544 4778888777743 45556555
|
|
| >cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.12 Score=47.96 Aligned_cols=42 Identities=24% Similarity=0.415 Sum_probs=37.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETA 56 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~ 56 (330)
++++++|+|+++++|.+++..+...|++|++++++.++.+.+
T Consensus 144 ~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~~~~~ 185 (328)
T cd08268 144 PGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRDAL 185 (328)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence 678999999999999999999999999999999987665443
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.11 Score=51.54 Aligned_cols=78 Identities=21% Similarity=0.207 Sum_probs=58.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
...++++|.|+ |.+|+.+++.|.+.|++|++++++++..++..+. ...+.++.+|.++.+.++++
T Consensus 229 ~~~~~iiIiG~-G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~----------~~~~~~i~gd~~~~~~L~~~---- 293 (453)
T PRK09496 229 KPVKRVMIVGG-GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEE----------LPNTLVLHGDGTDQELLEEE---- 293 (453)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH----------CCCCeEEECCCCCHHHHHhc----
Confidence 56799999999 9999999999999999999999998876654432 22456788999987765443
Q ss_pred HhcCCCeeEEEEcCC
Q psy13409 94 LDNESAIHLLINNAG 108 (330)
Q Consensus 94 ~~~~g~iDvlInnAG 108 (330)
.....|.+|.+..
T Consensus 294 --~~~~a~~vi~~~~ 306 (453)
T PRK09496 294 --GIDEADAFIALTN 306 (453)
T ss_pred --CCccCCEEEECCC
Confidence 1234577765543
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.12 Score=50.96 Aligned_cols=84 Identities=20% Similarity=0.247 Sum_probs=57.3
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecCh-------------------hHHHHHHHHHHHhhcccCCCC
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSL-------------------EKAETAADDIRTSLKDVKDAG 71 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~-------------------~~l~~~~~~l~~~~~~~~~~~ 71 (330)
.+|++.+|+|.|+ ||+|..+++.|+..|. ++++++.+. .+.+.+.+.+++. ++..
T Consensus 34 ~~L~~~~VlivG~-GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~----np~v 108 (390)
T PRK07411 34 KRLKAASVLCIGT-GGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEI----NPYC 108 (390)
T ss_pred HHHhcCcEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHH----CCCC
Confidence 3688999999999 8999999999999998 788887642 2333444444443 3556
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHhcCCCeeEEEEcCC
Q psy13409 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAG 108 (330)
Q Consensus 72 ~v~~i~~Dls~~~si~~l~~~i~~~~g~iDvlInnAG 108 (330)
++..+...++.+ ....++ ...|++|.+..
T Consensus 109 ~v~~~~~~~~~~-~~~~~~-------~~~D~Vvd~~d 137 (390)
T PRK07411 109 QVDLYETRLSSE-NALDIL-------APYDVVVDGTD 137 (390)
T ss_pred eEEEEecccCHH-hHHHHH-------hCCCEEEECCC
Confidence 777777666653 223332 24588887764
|
|
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.17 Score=46.30 Aligned_cols=31 Identities=23% Similarity=0.299 Sum_probs=26.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHCCC-EEEEEecC
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRGA-RVIMACRS 49 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~ 49 (330)
+++|.|+ ||+|.++++.|+..|. ++.++|.+
T Consensus 1 kVlvvG~-GGlG~eilk~La~~Gvg~i~ivD~D 32 (234)
T cd01484 1 KVLLVGA-GGIGCELLKNLALMGFGQIHVIDMD 32 (234)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 3788886 8999999999999998 78888875
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.14 Score=50.49 Aligned_cols=36 Identities=28% Similarity=0.335 Sum_probs=32.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecC
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRS 49 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~ 49 (330)
+|++.+|+|.|+ ||+|..+++.|+..|. ++++++.+
T Consensus 39 ~L~~~~VlviG~-GGlGs~va~~La~~Gvg~i~lvD~D 75 (392)
T PRK07878 39 RLKNARVLVIGA-GGLGSPTLLYLAAAGVGTLGIVEFD 75 (392)
T ss_pred HHhcCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCC
Confidence 578999999999 8999999999999998 78888764
|
|
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.13 Score=54.15 Aligned_cols=84 Identities=12% Similarity=0.209 Sum_probs=56.9
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecCh-------------------hHHHHHHHHHHHhhcccCCCC
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSL-------------------EKAETAADDIRTSLKDVKDAG 71 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~-------------------~~l~~~~~~l~~~~~~~~~~~ 71 (330)
.+|++.+|+|.|+ ||+|..++..|+..|. ++++++.+. .+.+-+.+.+.+ +++..
T Consensus 39 ~kL~~~~VlIvG~-GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~----inP~~ 113 (679)
T PRK14851 39 ERLAEAKVAIPGM-GGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALS----INPFL 113 (679)
T ss_pred HHHhcCeEEEECc-CHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHH----hCCCC
Confidence 3588999999997 8999999999999998 788877531 233333333333 34567
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHhcCCCeeEEEEcCC
Q psy13409 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAG 108 (330)
Q Consensus 72 ~v~~i~~Dls~~~si~~l~~~i~~~~g~iDvlInnAG 108 (330)
++..+...++. +.++.+++ ..|++|.+.-
T Consensus 114 ~I~~~~~~i~~-~n~~~~l~-------~~DvVid~~D 142 (679)
T PRK14851 114 EITPFPAGINA-DNMDAFLD-------GVDVVLDGLD 142 (679)
T ss_pred eEEEEecCCCh-HHHHHHHh-------CCCEEEECCC
Confidence 78888777753 34444443 3577776553
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.14 Score=48.79 Aligned_cols=31 Identities=23% Similarity=0.300 Sum_probs=27.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHCCC-EEEEEecC
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRGA-RVIMACRS 49 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~ 49 (330)
+|+|.|+ ||+|.++++.|+..|. ++.++|.+
T Consensus 1 kVlIVGa-GGlG~EiaKnLal~Gvg~ItIvD~D 32 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVLTGFGEIHIIDLD 32 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHHhcCCeEEEEcCC
Confidence 4788887 9999999999999998 78888864
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.081 Score=47.58 Aligned_cols=43 Identities=42% Similarity=0.511 Sum_probs=37.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHH
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDI 60 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l 60 (330)
++.|+||+|.+|.++++.|++.|++|++.+|+.++.+...+..
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~ 44 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKA 44 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHH
Confidence 5899999999999999999999999999999988776665543
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.096 Score=54.28 Aligned_cols=36 Identities=17% Similarity=0.234 Sum_probs=32.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecC
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRS 49 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~ 49 (330)
+|++.+++|.|+ ||+|..+++.|+.-|. ++++++..
T Consensus 335 kL~~~kVLIvGa-GGLGs~VA~~La~~GVg~ItlVD~D 371 (664)
T TIGR01381 335 RYSQLKVLLLGA-GTLGCNVARCLIGWGVRHITFVDNG 371 (664)
T ss_pred HHhcCeEEEECC-cHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 578999999999 9999999999999998 78888853
|
This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. |
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.082 Score=49.73 Aligned_cols=40 Identities=25% Similarity=0.378 Sum_probs=36.4
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChh
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLE 51 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~ 51 (330)
.+++||+++|+|.+.-+|+.++..|.++|++|+++.+...
T Consensus 154 i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~ 193 (286)
T PRK14175 154 IDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSK 193 (286)
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCch
Confidence 4799999999999888999999999999999999987643
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=94.85 E-value=1 Score=42.90 Aligned_cols=117 Identities=19% Similarity=0.155 Sum_probs=73.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHCCC--EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRGA--RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
++.|.|+ |.||..+|..|+.++. .+++++.+.+.++....++....... ...++.....| .++ +
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~-~~~~~~i~~~~---y~~-------~-- 66 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALT-YSTNTKIRAGD---YDD-------C-- 66 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccC-CCCCEEEEECC---HHH-------h--
Confidence 3678898 9999999999999885 69999999887766666665432111 11233333323 221 1
Q ss_pred cCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcC
Q psy13409 96 NESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSS 156 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS 156 (330)
..-|++|..||....+ .++. +-.+.+..|. .+++.+.+.+.+.+...++.+.|
T Consensus 67 --~~aDivvitaG~~~kp-g~tr-~R~dll~~N~----~I~~~i~~~i~~~~p~~i~ivvs 119 (307)
T cd05290 67 --ADADIIVITAGPSIDP-GNTD-DRLDLAQTNA----KIIREIMGNITKVTKEAVIILIT 119 (307)
T ss_pred --CCCCEEEECCCCCCCC-CCCc-hHHHHHHHHH----HHHHHHHHHHHHhCCCeEEEEec
Confidence 2459999999986433 2221 1233444554 44788888888777555555555
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.3 Score=41.69 Aligned_cols=92 Identities=23% Similarity=0.184 Sum_probs=56.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhccc-CCCCeEEEEEccCCCHHHHHHHHHH--H
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDV-KDAGEVVIRQLDLSSLKSVRKCAQE--I 93 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~-~~~~~v~~i~~Dls~~~si~~l~~~--i 93 (330)
+++-+.|- |-+|..++++|++.|++|++.+|+.++.++..+.-....... ..-.+..++..-+.+.+++++++.. +
T Consensus 2 ~~Ig~IGl-G~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i 80 (163)
T PF03446_consen 2 MKIGFIGL-GNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENI 80 (163)
T ss_dssp BEEEEE---SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTH
T ss_pred CEEEEEch-HHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHH
Confidence 46778887 899999999999999999999999988777654210000000 0001223455567777888888777 6
Q ss_pred HhcCCCeeEEEEcCCC
Q psy13409 94 LDNESAIHLLINNAGV 109 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~ 109 (330)
.....+=.++|++...
T Consensus 81 ~~~l~~g~iiid~sT~ 96 (163)
T PF03446_consen 81 LAGLRPGKIIIDMSTI 96 (163)
T ss_dssp GGGS-TTEEEEE-SS-
T ss_pred hhccccceEEEecCCc
Confidence 6654444666666653
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.097 Score=45.77 Aligned_cols=45 Identities=29% Similarity=0.311 Sum_probs=38.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHh
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTS 63 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~ 63 (330)
+|.|.|+ |-+|..+|..++..|++|++.+++.+.+++..+.+++.
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~ 45 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERL 45 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHH
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHH
Confidence 4788998 99999999999999999999999999888887777653
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.06 Score=46.32 Aligned_cols=44 Identities=27% Similarity=0.396 Sum_probs=34.8
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAET 55 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~ 55 (330)
.+++||+++|.|.|.-+|+-++..|.++|+.|.++......+++
T Consensus 32 ~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~ 75 (160)
T PF02882_consen 32 IDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQE 75 (160)
T ss_dssp -STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHH
T ss_pred CCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccc
Confidence 57999999999999999999999999999999999887655443
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >cd08244 MDR_enoyl_red Possible enoyl reductase | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.2 Score=46.75 Aligned_cols=79 Identities=16% Similarity=0.305 Sum_probs=52.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.+.+++|+|+++++|.+++..+...|++|+.+.++.++.+.+ +.+ +.. .+ .|..+.+..+.+.+..
T Consensus 142 ~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~~~-~~~---------g~~-~~--~~~~~~~~~~~~~~~~- 207 (324)
T cd08244 142 PGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALV-RAL---------GAD-VA--VDYTRPDWPDQVREAL- 207 (324)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHc---------CCC-EE--EecCCccHHHHHHHHc-
Confidence 588999999999999999999999999999999988765443 221 211 11 2333333233332211
Q ss_pred hcCCCeeEEEEcCC
Q psy13409 95 DNESAIHLLINNAG 108 (330)
Q Consensus 95 ~~~g~iDvlInnAG 108 (330)
....+|+++++.|
T Consensus 208 -~~~~~d~vl~~~g 220 (324)
T cd08244 208 -GGGGVTVVLDGVG 220 (324)
T ss_pred -CCCCceEEEECCC
Confidence 1235899999987
|
Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr |
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.96 Score=42.68 Aligned_cols=115 Identities=19% Similarity=0.153 Sum_probs=65.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
+++.|.|+ |.+|..++..++..|. +|++++++++.+.....++...........++.. -++.+ . +
T Consensus 3 ~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~----~~d~~---~----~-- 68 (307)
T PRK06223 3 KKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITG----TNDYE---D----I-- 68 (307)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEe----CCCHH---H----H--
Confidence 57899999 9999999999999875 8999999887665443333322111001112211 01211 1 1
Q ss_pred cCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCC-CeEEEEc
Q psy13409 96 NESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAP-ARIINLS 155 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~-g~IV~iS 155 (330)
..-|++|.++|..... ..+ -.+.+..|. .+.+.+.+.+.+... +.+|+++
T Consensus 69 --~~aDiVii~~~~p~~~-~~~---r~~~~~~n~----~i~~~i~~~i~~~~~~~~viv~t 119 (307)
T PRK06223 69 --AGSDVVVITAGVPRKP-GMS---RDDLLGINA----KIMKDVAEGIKKYAPDAIVIVVT 119 (307)
T ss_pred --CCCCEEEECCCCCCCc-CCC---HHHHHHHHH----HHHHHHHHHHHHHCCCeEEEEec
Confidence 2459999999875422 222 233333344 446666666655543 4455554
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.22 Score=40.73 Aligned_cols=76 Identities=16% Similarity=0.310 Sum_probs=54.1
Q ss_pred EEEEEcCCCchHHHHHHHHHH-CCCEEEE-EecCh----------------------hHHHHHHHHHHHhhcccCCCCeE
Q psy13409 18 TAIVTGSNTGIGKCTANELAK-RGARVIM-ACRSL----------------------EKAETAADDIRTSLKDVKDAGEV 73 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~-~G~~Vil-~~R~~----------------------~~l~~~~~~l~~~~~~~~~~~~v 73 (330)
+++|.|++|-+|+.+++.+.+ .+.+++. ++|+. +.++++.+. ..
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~-----------~D- 69 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEE-----------AD- 69 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH------------S-
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhccc-----------CC-
Confidence 689999999999999999999 5777554 56665 223332221 11
Q ss_pred EEEEccCCCHHHHHHHHHHHHhcCCCeeEEEEcCCC
Q psy13409 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV 109 (330)
Q Consensus 74 ~~i~~Dls~~~si~~l~~~i~~~~g~iDvlInnAG~ 109 (330)
+..|+|.++.+...++.+.+. .+.+++-..|.
T Consensus 70 --VvIDfT~p~~~~~~~~~~~~~--g~~~ViGTTG~ 101 (124)
T PF01113_consen 70 --VVIDFTNPDAVYDNLEYALKH--GVPLVIGTTGF 101 (124)
T ss_dssp --EEEEES-HHHHHHHHHHHHHH--T-EEEEE-SSS
T ss_pred --EEEEcCChHHhHHHHHHHHhC--CCCEEEECCCC
Confidence 567999999999988888776 67889888886
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.43 Score=45.48 Aligned_cols=116 Identities=22% Similarity=0.199 Sum_probs=69.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCC--EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGA--RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
+++.|+|+ |+||.+++..|+.++. .+++++.+.+.++....++....... ...+ .+..| .+.++
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~--~~~~-~i~~~-~~y~~--------- 66 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPL--GSDV-KITGD-GDYED--------- 66 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhc--cCce-EEecC-CChhh---------
Confidence 46889999 9999999999988874 79999999666555555544322111 1111 11122 11111
Q ss_pred hcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcC
Q psy13409 95 DNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSS 156 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS 156 (330)
...-|++|-.||....+. ++. .+.+..|..= ++.+.+.+.+.....|+.+-|
T Consensus 67 --~~~aDiVvitAG~prKpG-mtR---~DLl~~Na~I----~~~i~~~i~~~~~d~ivlVvt 118 (313)
T COG0039 67 --LKGADIVVITAGVPRKPG-MTR---LDLLEKNAKI----VKDIAKAIAKYAPDAIVLVVT 118 (313)
T ss_pred --hcCCCEEEEeCCCCCCCC-CCH---HHHHHhhHHH----HHHHHHHHHhhCCCeEEEEec
Confidence 234599999999876442 333 3344555544 666666666665544554444
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.24 Score=46.87 Aligned_cols=79 Identities=19% Similarity=0.194 Sum_probs=52.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCE-EEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGAR-VIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~-Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
..|.+++|+|+ |++|..++..+...|++ |+++++++++.+.+ +++ +.. ...|..+.+ .+++.+
T Consensus 162 ~~g~~vlV~G~-G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~-~~~---------ga~---~~i~~~~~~-~~~~~~- 225 (339)
T cd08239 162 SGRDTVLVVGA-GPVGLGALMLARALGAEDVIGVDPSPERLELA-KAL---------GAD---FVINSGQDD-VQEIRE- 225 (339)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHh---------CCC---EEEcCCcch-HHHHHH-
Confidence 35899999986 89999999988889998 99999988775543 222 221 123444433 333322
Q ss_pred HHhcCCCeeEEEEcCCC
Q psy13409 93 ILDNESAIHLLINNAGV 109 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~ 109 (330)
... ...+|++|.+.|.
T Consensus 226 ~~~-~~~~d~vid~~g~ 241 (339)
T cd08239 226 LTS-GAGADVAIECSGN 241 (339)
T ss_pred HhC-CCCCCEEEECCCC
Confidence 211 1258999999884
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.25 Score=49.29 Aligned_cols=41 Identities=29% Similarity=0.416 Sum_probs=35.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAA 57 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~ 57 (330)
+++.|.||.|.+|.++++.|.+.|++|++.+|+.+...+..
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a 41 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVA 41 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHH
Confidence 36899999999999999999999999999999977654443
|
|
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.3 Score=47.17 Aligned_cols=79 Identities=23% Similarity=0.253 Sum_probs=52.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCC-HHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSS-LKSVRKCAQE 92 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~-~~si~~l~~~ 92 (330)
.|.+++|+|+ |+||...+..+...|+ +|++++++.++++.+ +++ +... ..|..+ .+++...+.+
T Consensus 185 ~g~~VlV~G~-G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a-~~~---------Ga~~---~i~~~~~~~~~~~~v~~ 250 (368)
T TIGR02818 185 EGDTVAVFGL-GGIGLSVIQGARMAKASRIIAIDINPAKFELA-KKL---------GATD---CVNPNDYDKPIQEVIVE 250 (368)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHh---------CCCe---EEcccccchhHHHHHHH
Confidence 5899999986 9999999888888898 799999998876544 222 2211 123332 1223333333
Q ss_pred HHhcCCCeeEEEEcCCC
Q psy13409 93 ILDNESAIHLLINNAGV 109 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~ 109 (330)
+.. +.+|++|.++|.
T Consensus 251 ~~~--~g~d~vid~~G~ 265 (368)
T TIGR02818 251 ITD--GGVDYSFECIGN 265 (368)
T ss_pred HhC--CCCCEEEECCCC
Confidence 332 368999999984
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.99 Score=41.29 Aligned_cols=107 Identities=16% Similarity=0.141 Sum_probs=68.1
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
++.|+++|=.|++|| -++.-|++.|++|+.++-++..++.....-.+ .+..+.+ ....+++
T Consensus 57 ~l~g~~vLDvGCGgG---~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e------~gv~i~y----------~~~~~ed 117 (243)
T COG2227 57 DLPGLRVLDVGCGGG---ILSEPLARLGASVTGIDASEKPIEVAKLHALE------SGVNIDY----------RQATVED 117 (243)
T ss_pred CCCCCeEEEecCCcc---HhhHHHHHCCCeeEEecCChHHHHHHHHhhhh------ccccccc----------hhhhHHH
Confidence 389999999999998 68999999999999999998876655433322 1222222 2233444
Q ss_pred HHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCC
Q psy13409 93 ILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLA 158 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~ 158 (330)
+.+..+..|++++.=-.-.. .+++. +++.+..+++ .+-++++|.+.
T Consensus 118 l~~~~~~FDvV~cmEVlEHv---~dp~~--------------~~~~c~~lvk---P~G~lf~STin 163 (243)
T COG2227 118 LASAGGQFDVVTCMEVLEHV---PDPES--------------FLRACAKLVK---PGGILFLSTIN 163 (243)
T ss_pred HHhcCCCccEEEEhhHHHcc---CCHHH--------------HHHHHHHHcC---CCcEEEEeccc
Confidence 44555788999876433211 12221 3444444332 46788899865
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.06 Score=48.03 Aligned_cols=38 Identities=24% Similarity=0.369 Sum_probs=34.9
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL 50 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~ 50 (330)
++++||.+||.|| |.+|...++.|++.|++|++++++.
T Consensus 6 l~l~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~VIs~~~ 43 (202)
T PRK06718 6 IDLSNKRVVIVGG-GKVAGRRAITLLKYGAHIVVISPEL 43 (202)
T ss_pred EEcCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 4699999999999 9999999999999999999998764
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.1 Score=49.02 Aligned_cols=40 Identities=30% Similarity=0.360 Sum_probs=35.8
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL 50 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~ 50 (330)
..+++||+++|.|+++-+|+.++..|+++|++|+++.|..
T Consensus 154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t 193 (283)
T PRK14192 154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT 193 (283)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc
Confidence 3578999999999977799999999999999999998854
|
|
| >cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3 | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.24 Score=46.75 Aligned_cols=77 Identities=18% Similarity=0.162 Sum_probs=50.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHCCC-EEEEEecC-------------------hhHHHHHHHHHHHhhcccCCCCeEEEEE
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRGA-RVIMACRS-------------------LEKAETAADDIRTSLKDVKDAGEVVIRQ 77 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~-------------------~~~l~~~~~~l~~~~~~~~~~~~v~~i~ 77 (330)
+|+|.|+ ||+|.++++.|+..|. ++.++|.+ ..+.+.+.+.+++. ++..++..+.
T Consensus 1 kVlVVGa-GGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~----np~v~I~~~~ 75 (291)
T cd01488 1 KILVIGA-GGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDR----VPGVNVTPHF 75 (291)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHH----CCCCEEEEEe
Confidence 4788887 8999999999999998 78887753 13344444444443 2456777777
Q ss_pred ccCCCHHHHHHHHHHHHhcCCCeeEEEEcCC
Q psy13409 78 LDLSSLKSVRKCAQEILDNESAIHLLINNAG 108 (330)
Q Consensus 78 ~Dls~~~si~~l~~~i~~~~g~iDvlInnAG 108 (330)
.++.+.+ ..+ +...|++|.+..
T Consensus 76 ~~i~~~~--~~f-------~~~fdvVi~alD 97 (291)
T cd01488 76 GKIQDKD--EEF-------YRQFNIIICGLD 97 (291)
T ss_pred cccCchh--HHH-------hcCCCEEEECCC
Confidence 7776532 122 234688877653
|
UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.18 Score=47.77 Aligned_cols=31 Identities=16% Similarity=0.286 Sum_probs=26.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHCCC-EEEEEecC
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRGA-RVIMACRS 49 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~ 49 (330)
+++|.|+ ||+|..+++.|+..|. ++++++.+
T Consensus 1 kVLIvGa-GGLGs~vA~~La~aGVg~ItlvD~D 32 (307)
T cd01486 1 KCLLLGA-GTLGCNVARNLLGWGVRHITFVDSG 32 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCCeEEEECCC
Confidence 4788888 8999999999999998 78888754
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.15 Score=55.95 Aligned_cols=77 Identities=22% Similarity=0.274 Sum_probs=59.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCC-CE-------------EEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccC
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRG-AR-------------VIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDL 80 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G-~~-------------Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dl 80 (330)
+.|.|+|.|+ |.||..+++.|++.. +. |.+++++.+.++++.+.+ .++..+.+|+
T Consensus 568 ~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~----------~~~~~v~lDv 636 (1042)
T PLN02819 568 KSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI----------ENAEAVQLDV 636 (1042)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc----------CCCceEEeec
Confidence 4789999998 999999999999763 33 888888887766655432 2456789999
Q ss_pred CCHHHHHHHHHHHHhcCCCeeEEEEcCCC
Q psy13409 81 SSLKSVRKCAQEILDNESAIHLLINNAGV 109 (330)
Q Consensus 81 s~~~si~~l~~~i~~~~g~iDvlInnAG~ 109 (330)
+|.+++.++++ .+|++|++...
T Consensus 637 ~D~e~L~~~v~-------~~DaVIsalP~ 658 (1042)
T PLN02819 637 SDSESLLKYVS-------QVDVVISLLPA 658 (1042)
T ss_pred CCHHHHHHhhc-------CCCEEEECCCc
Confidence 99888766654 36999999874
|
|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.12 Score=48.38 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=37.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHH
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADD 59 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~ 59 (330)
+++++|.|+ ||-+++++..|++.|+ +|+++.|+.++.+++.+.
T Consensus 122 ~~~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~ 165 (272)
T PRK12550 122 DLVVALRGS-GGMAKAVAAALRDAGFTDGTIVARNEKTGKALAEL 165 (272)
T ss_pred CCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH
Confidence 578999998 9999999999999998 699999999877766544
|
|
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.21 Score=54.22 Aligned_cols=84 Identities=15% Similarity=0.211 Sum_probs=56.9
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecCh-------------------hHHHHHHHHHHHhhcccCCCC
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSL-------------------EKAETAADDIRTSLKDVKDAG 71 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~-------------------~~l~~~~~~l~~~~~~~~~~~ 71 (330)
.+|++.+|+|.|+ ||+|..+++.|+..|. ++.+++.+. .+.+-..+.+++ +|+..
T Consensus 328 ~kL~~srVlVvGl-GGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~----INP~v 402 (989)
T PRK14852 328 RRLLRSRVAIAGL-GGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALS----VNPFL 402 (989)
T ss_pred HHHhcCcEEEECC-cHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHH----HCCCC
Confidence 3688999999997 8999999999999998 788877531 233333333333 34567
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHhcCCCeeEEEEcCC
Q psy13409 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAG 108 (330)
Q Consensus 72 ~v~~i~~Dls~~~si~~l~~~i~~~~g~iDvlInnAG 108 (330)
+|..+...++. +.++.+++ ..|++|.+..
T Consensus 403 ~I~~~~~~I~~-en~~~fl~-------~~DiVVDa~D 431 (989)
T PRK14852 403 DIRSFPEGVAA-ETIDAFLK-------DVDLLVDGID 431 (989)
T ss_pred eEEEEecCCCH-HHHHHHhh-------CCCEEEECCC
Confidence 77777777643 44454443 3577776553
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.4 Score=45.84 Aligned_cols=41 Identities=29% Similarity=0.366 Sum_probs=36.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETA 56 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~ 56 (330)
.|.+++|.|+ |+||...+..+...|++|+++++++++++.+
T Consensus 166 ~g~~VlV~G~-G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~ 206 (349)
T TIGR03201 166 KGDLVIVIGA-GGVGGYMVQTAKAMGAAVVAIDIDPEKLEMM 206 (349)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEcCCHHHHHHH
Confidence 5899999999 9999999988888999999999998876544
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.3 Score=47.44 Aligned_cols=80 Identities=20% Similarity=0.238 Sum_probs=52.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCH-HHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSL-KSVRKCAQ 91 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~-~si~~l~~ 91 (330)
-.|.+++|.|+ |+||...+..+...|+ +|+++++++++++.+. ++ +... ++ |..+. +++...+.
T Consensus 197 ~~g~~VlV~G~-G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~-~~---------Ga~~-~i--~~~~~~~~~~~~v~ 262 (381)
T PLN02740 197 QAGSSVAIFGL-GAVGLAVAEGARARGASKIIGVDINPEKFEKGK-EM---------GITD-FI--NPKDSDKPVHERIR 262 (381)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHH-Hc---------CCcE-EE--ecccccchHHHHHH
Confidence 36899999986 9999999988888898 6999999887765542 21 2221 22 33332 12333333
Q ss_pred HHHhcCCCeeEEEEcCCC
Q psy13409 92 EILDNESAIHLLINNAGV 109 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~ 109 (330)
++.. +.+|++|.++|.
T Consensus 263 ~~~~--~g~dvvid~~G~ 278 (381)
T PLN02740 263 EMTG--GGVDYSFECAGN 278 (381)
T ss_pred HHhC--CCCCEEEECCCC
Confidence 3322 258999999984
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.1 Score=49.38 Aligned_cols=42 Identities=29% Similarity=0.305 Sum_probs=37.9
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKA 53 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l 53 (330)
.++.||.+.|.|.++-+|+.++..|+++|++|++..|....+
T Consensus 155 i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l 196 (301)
T PRK14194 155 GDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDA 196 (301)
T ss_pred CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCH
Confidence 579999999999999999999999999999999998775533
|
|
| >KOG0023|consensus | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.51 Score=45.00 Aligned_cols=65 Identities=20% Similarity=0.272 Sum_probs=46.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCC-CHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLS-SLKSVRKCAQE 92 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls-~~~si~~l~~~ 92 (330)
.|+++.|+|++| +|.--++.--.-|++|+++++...+-++..+.+ +.... +|.+ +++.++++.+.
T Consensus 181 pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~~~kkeea~~~L---------GAd~f---v~~~~d~d~~~~~~~~ 246 (360)
T KOG0023|consen 181 PGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSL---------GADVF---VDSTEDPDIMKAIMKT 246 (360)
T ss_pred CCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCCchhHHHHHHhc---------Cccee---EEecCCHHHHHHHHHh
Confidence 899999999966 887655555566999999999987777776655 23332 3566 66666666553
|
|
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.27 Score=47.47 Aligned_cols=79 Identities=20% Similarity=0.246 Sum_probs=53.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCH-HHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSL-KSVRKCAQE 92 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~-~si~~l~~~ 92 (330)
.|.+++|.|+ |+||...+..+...|+ .|++++++.++++.+ +++ +... + .|..+. +++...+.+
T Consensus 186 ~g~~VlV~G~-G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~-~~l---------Ga~~-~--i~~~~~~~~~~~~v~~ 251 (368)
T cd08300 186 PGSTVAVFGL-GAVGLAVIQGAKAAGASRIIGIDINPDKFELA-KKF---------GATD-C--VNPKDHDKPIQQVLVE 251 (368)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH-HHc---------CCCE-E--EcccccchHHHHHHHH
Confidence 5899999975 8999999998888999 699999998876543 222 2221 1 233332 234444444
Q ss_pred HHhcCCCeeEEEEcCCC
Q psy13409 93 ILDNESAIHLLINNAGV 109 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~ 109 (330)
+.. +.+|++|.+.|.
T Consensus 252 ~~~--~g~d~vid~~g~ 266 (368)
T cd08300 252 MTD--GGVDYTFECIGN 266 (368)
T ss_pred HhC--CCCcEEEECCCC
Confidence 333 368999999883
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.041 Score=43.51 Aligned_cols=38 Identities=26% Similarity=0.396 Sum_probs=33.2
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL 50 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~ 50 (330)
.+++|+.+||+|| |.+|..=++.|++.|++|++++...
T Consensus 3 l~l~~~~vlVvGg-G~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 3 LDLKGKRVLVVGG-GPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp E--TT-EEEEEEE-SHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred EEcCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCch
Confidence 4689999999999 9999999999999999999999986
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.16 Score=47.66 Aligned_cols=42 Identities=21% Similarity=0.294 Sum_probs=37.2
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKA 53 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l 53 (330)
.++.||.++|.|.|.-+|+-++..|.++|++|.++......+
T Consensus 153 i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l 194 (285)
T PRK14191 153 IEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDL 194 (285)
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHH
Confidence 578999999999999999999999999999999987655443
|
|
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.36 Score=47.47 Aligned_cols=44 Identities=11% Similarity=0.115 Sum_probs=35.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCC---EEEEEecChhHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGA---RVIMACRSLEKAETAAD 58 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~---~Vil~~R~~~~l~~~~~ 58 (330)
.|.+++|.||+|+||...+..+...|+ +|+++++++++++.+.+
T Consensus 175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~ 221 (410)
T cd08238 175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQR 221 (410)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHH
Confidence 578999999999999998776666554 79999999988765543
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.14 Score=44.05 Aligned_cols=43 Identities=33% Similarity=0.352 Sum_probs=32.8
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAE 54 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~ 54 (330)
+..+.||+++|.|- |.+|+.+|+.|...|++|+++..++-++-
T Consensus 18 ~~~l~Gk~vvV~GY-G~vG~g~A~~lr~~Ga~V~V~e~DPi~al 60 (162)
T PF00670_consen 18 NLMLAGKRVVVIGY-GKVGKGIARALRGLGARVTVTEIDPIRAL 60 (162)
T ss_dssp -S--TTSEEEEE---SHHHHHHHHHHHHTT-EEEEE-SSHHHHH
T ss_pred ceeeCCCEEEEeCC-CcccHHHHHHHhhCCCEEEEEECChHHHH
Confidence 45689999999999 99999999999999999999999985543
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.4 Score=44.99 Aligned_cols=43 Identities=35% Similarity=0.438 Sum_probs=36.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETA 56 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~ 56 (330)
.+|.+++|.|+++++|.+++......|++|+++.++.++.+.+
T Consensus 138 ~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~~~~~~ 180 (329)
T cd08250 138 KSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAEFL 180 (329)
T ss_pred CCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcHHHHHHH
Confidence 3689999999999999999998888999999999887665433
|
Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.97 Score=42.62 Aligned_cols=113 Identities=19% Similarity=0.181 Sum_probs=63.1
Q ss_pred EEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhcC
Q psy13409 19 AIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNE 97 (330)
Q Consensus 19 aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~~ 97 (330)
+.|.|+ |.+|..++..|+.+|. +|++++++++.+....-++...........++.. . +|.+ .+
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~-t---~d~~---~l-------- 64 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTG-T---NDYE---DI-------- 64 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEE-c---CCHH---Hh--------
Confidence 468898 8899999999998876 9999999976543332223221111111112211 1 1211 11
Q ss_pred CCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCC-CeEEEEc
Q psy13409 98 SAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAP-ARIINLS 155 (330)
Q Consensus 98 g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~-g~IV~iS 155 (330)
..-|++|.++|...... .+. .+.+..| +.+.+.+.+.+.+... +.+|++|
T Consensus 65 ~dADiVIit~g~p~~~~-~~r---~e~~~~n----~~i~~~i~~~i~~~~p~~~iIv~s 115 (300)
T cd01339 65 AGSDVVVITAGIPRKPG-MSR---DDLLGTN----AKIVKEVAENIKKYAPNAIVIVVT 115 (300)
T ss_pred CCCCEEEEecCCCCCcC-CCH---HHHHHHH----HHHHHHHHHHHHHHCCCeEEEEec
Confidence 23599999999754321 221 1233333 4456777777766654 4445555
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >KOG2013|consensus | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.32 Score=48.46 Aligned_cols=83 Identities=17% Similarity=0.215 Sum_probs=59.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
+++-++||.|| ||||-++.+.|+..|. .|.+++-+.-++..+-+ +..+.+=|+....+ ..+.+
T Consensus 10 i~~~riLvVGa-GGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNR-------------QFLFrkkhVgqsKA--~vA~~ 73 (603)
T KOG2013|consen 10 IKSGRILVVGA-GGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNR-------------QFLFRKKHVGQSKA--TVAAK 73 (603)
T ss_pred hccCeEEEEec-CcccHHHHHHHHHhcCCeeEEEeccceeccchhh-------------hheeehhhcCchHH--HHHHH
Confidence 57889999999 9999999999999998 69999887655444332 23455566766553 23333
Q ss_pred HHhc-CCCeeEEEEcCCCCCC
Q psy13409 93 ILDN-ESAIHLLINNAGVMMC 112 (330)
Q Consensus 93 i~~~-~g~iDvlInnAG~~~~ 112 (330)
+..+ ..+++++-+++.+..+
T Consensus 74 ~v~~Fnpn~~l~~yhanI~e~ 94 (603)
T KOG2013|consen 74 AVKQFNPNIKLVPYHANIKEP 94 (603)
T ss_pred HHHHhCCCCceEeccccccCc
Confidence 3344 4689999888877643
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.083 Score=45.24 Aligned_cols=36 Identities=25% Similarity=0.305 Sum_probs=33.1
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEec
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACR 48 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R 48 (330)
.+|+||.++|.|| |.+|...++.|++.|++|++++.
T Consensus 9 l~l~~~~vlVvGG-G~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 9 FNLHNKVVVIIGG-GKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred EEcCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcC
Confidence 5799999999999 89999999999999999998853
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.69 Score=45.44 Aligned_cols=115 Identities=16% Similarity=0.022 Sum_probs=70.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCC-E----EEE----EecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGA-R----VIM----ACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVR 87 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~-~----Vil----~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~ 87 (330)
-++.|+|++|.+|.+++..|+..|. . |.+ ++++.+.++...-+++....... .++.+... +.++
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~--~~v~i~~~---~y~~-- 117 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLL--REVSIGID---PYEV-- 117 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhc--CceEEecC---CHHH--
Confidence 4789999999999999999998874 3 444 48888887777777665421111 12222211 2111
Q ss_pred HHHHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC--CCeEEEEc
Q psy13409 88 KCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA--PARIINLS 155 (330)
Q Consensus 88 ~l~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~--~g~IV~iS 155 (330)
+..-|++|..||....+ .. +-.+.+..|..= ++.+.+.+.+.. .+.||++|
T Consensus 118 ---------~kdaDIVVitAG~prkp-g~---tR~dll~~N~~I----~k~i~~~I~~~a~~~~iviVVs 170 (387)
T TIGR01757 118 ---------FEDADWALLIGAKPRGP-GM---ERADLLDINGQI----FADQGKALNAVASKNCKVLVVG 170 (387)
T ss_pred ---------hCCCCEEEECCCCCCCC-CC---CHHHHHHHHHHH----HHHHHHHHHHhCCCCeEEEEcC
Confidence 23469999999986432 22 234445555544 677777776633 35555555
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=93.97 E-value=1.1 Score=42.45 Aligned_cols=112 Identities=21% Similarity=0.184 Sum_probs=67.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHCC--CEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRG--ARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G--~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
++.|.|+ |.+|..++..|+.+| ..|++++++.+++......+...... . ........ +.++
T Consensus 2 kI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~-~--~~~~i~~~---d~~~---------- 64 (308)
T cd05292 2 KVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPF-V--KPVRIYAG---DYAD---------- 64 (308)
T ss_pred EEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccc-c--CCeEEeeC---CHHH----------
Confidence 5889998 899999999999999 47999999987766444444432111 0 11222211 2211
Q ss_pred cCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEc
Q psy13409 96 NESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLS 155 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iS 155 (330)
...-|++|.++|..... .. +..+.+..|.. +++.+.+.+.+.. .|.+++++
T Consensus 65 -l~~aDiViita~~~~~~-~~---~r~dl~~~n~~----i~~~~~~~l~~~~~~giiiv~t 116 (308)
T cd05292 65 -CKGADVVVITAGANQKP-GE---TRLDLLKRNVA----IFKEIIPQILKYAPDAILLVVT 116 (308)
T ss_pred -hCCCCEEEEccCCCCCC-CC---CHHHHHHHHHH----HHHHHHHHHHHHCCCeEEEEec
Confidence 13469999999976432 12 22333444444 3666666666554 45666554
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2 | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.23 Score=46.39 Aligned_cols=42 Identities=26% Similarity=0.238 Sum_probs=36.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETA 56 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~ 56 (330)
.|.+++|.|+++++|.+++......|++|+++.++.+..+.+
T Consensus 139 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~ 180 (324)
T cd08292 139 PGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAEL 180 (324)
T ss_pred CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHH
Confidence 689999999999999999999999999999998887765444
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina |
| >cd05286 QOR2 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.55 Score=43.05 Aligned_cols=41 Identities=34% Similarity=0.353 Sum_probs=36.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAET 55 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~ 55 (330)
+|.+++|.|+++++|.+++..+...|+.|+++.++.++.+.
T Consensus 136 ~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~ 176 (320)
T cd05286 136 PGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAEL 176 (320)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHH
Confidence 68999999999999999999999999999999888776543
|
Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone |
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.6 Score=44.88 Aligned_cols=40 Identities=25% Similarity=0.228 Sum_probs=36.3
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEK 52 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~ 52 (330)
..|.|+++.|.|. |.||.++|+.|...|++|++.+|+...
T Consensus 142 ~~l~g~~VgIIG~-G~IG~~vA~~L~~~G~~V~~~d~~~~~ 181 (330)
T PRK12480 142 KPVKNMTVAIIGT-GRIGAATAKIYAGFGATITAYDAYPNK 181 (330)
T ss_pred cccCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCChhH
Confidence 4689999999998 889999999999999999999998754
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=93.92 E-value=1.1 Score=42.28 Aligned_cols=113 Identities=18% Similarity=0.174 Sum_probs=70.2
Q ss_pred EEEEcCCCchHHHHHHHHHHCC--CEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 19 AIVTGSNTGIGKCTANELAKRG--ARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 19 aLITGas~gIG~aia~~L~~~G--~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
+.|.|+ |++|.+++..|+..| .++++++++.+.+.....++....... .......+ .+.++
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~---~~~~i~~~--~~~~~----------- 63 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFL---ATGTIVRG--GDYAD----------- 63 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhcccc---CCCeEEEC--CCHHH-----------
Confidence 357887 789999999999998 579999999988887777776543211 11222211 11111
Q ss_pred CCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcC
Q psy13409 97 ESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSS 156 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS 156 (330)
...-|++|.++|....+ .++. .+.+..|+. +++.+.+.+.+.. .+.+|++|-
T Consensus 64 l~~aDiVIitag~p~~~-~~~R---~~l~~~n~~----i~~~~~~~i~~~~p~~~viv~sN 116 (300)
T cd00300 64 AADADIVVITAGAPRKP-GETR---LDLINRNAP----ILRSVITNLKKYGPDAIILVVSN 116 (300)
T ss_pred hCCCCEEEEcCCCCCCC-CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCeEEEEccC
Confidence 12459999999975432 2222 333444444 4666777666665 456666663
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.66 Score=44.22 Aligned_cols=114 Identities=18% Similarity=0.079 Sum_probs=66.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHCCC--EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRGA--RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
++.|+|++|.+|.+++..|+.+|. .+++++.+ .++...-+++... ...++.....| +++ .+
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~----~~~~i~~~~~~----~~~-------y~ 64 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHIN----TPAKVTGYLGP----EEL-------KK 64 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCC----CcceEEEecCC----Cch-------HH
Confidence 689999999999999999998884 79999988 3333333333210 00112111010 111 11
Q ss_pred cCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcC
Q psy13409 96 NESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSS 156 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS 156 (330)
....-|++|.+||....+ . .+-.+.++.|..- ++.+.+.+.+.. .+.+|++|=
T Consensus 65 ~~~daDivvitaG~~~k~-g---~tR~dll~~N~~i----~~~i~~~i~~~~p~a~vivvtN 118 (310)
T cd01337 65 ALKGADVVVIPAGVPRKP-G---MTRDDLFNINAGI----VRDLATAVAKACPKALILIISN 118 (310)
T ss_pred hcCCCCEEEEeCCCCCCC-C---CCHHHHHHHHHHH----HHHHHHHHHHhCCCeEEEEccC
Confidence 223469999999986433 2 2234455666655 555566555554 355555554
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.49 Score=43.75 Aligned_cols=42 Identities=26% Similarity=0.362 Sum_probs=36.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAET 55 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~ 55 (330)
-.|.+++|.|+++++|.+++......|++|+++.+++++.+.
T Consensus 141 ~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~ 182 (320)
T cd08243 141 QPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAAL 182 (320)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 368999999999999999999999999999999888765433
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd08241 QOR1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.28 Score=45.18 Aligned_cols=41 Identities=37% Similarity=0.463 Sum_probs=36.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAET 55 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~ 55 (330)
+|.+++|+|+++++|.+++..+...|+.|+.+.++.++.+.
T Consensus 139 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~ 179 (323)
T cd08241 139 PGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLAL 179 (323)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHH
Confidence 68999999999999999999999999999999988765443
|
QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic |
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.4 Score=43.13 Aligned_cols=46 Identities=24% Similarity=0.304 Sum_probs=38.0
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh-hHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL-EKAETAA 57 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~-~~l~~~~ 57 (330)
..+++||.++|+|| |.+|.-=++.|++.|++|++++... +.+....
T Consensus 7 ~~~l~~k~VlvvGg-G~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~ 53 (210)
T COG1648 7 FLDLEGKKVLVVGG-GSVALRKARLLLKAGADVTVVSPEFEPELKALI 53 (210)
T ss_pred EEEcCCCEEEEECC-CHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHH
Confidence 35799999999999 8899999999999999999988776 4444433
|
|
| >PTZ00354 alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.63 Score=43.45 Aligned_cols=42 Identities=26% Similarity=0.461 Sum_probs=36.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETA 56 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~ 56 (330)
.|.+++|.|+++++|.+++..+...|+.++++.++.++.+.+
T Consensus 140 ~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~ 181 (334)
T PTZ00354 140 KGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFC 181 (334)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 578999999999999999999999999988888887665444
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.18 Score=50.03 Aligned_cols=44 Identities=36% Similarity=0.413 Sum_probs=38.8
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETA 56 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~ 56 (330)
..+.|++++|.|+ |.||+.++..+...|++|+++++++.+++..
T Consensus 198 ~~l~GktVvViG~-G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A 241 (413)
T cd00401 198 VMIAGKVAVVAGY-GDVGKGCAQSLRGQGARVIVTEVDPICALQA 241 (413)
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECChhhHHHH
Confidence 4579999999999 7999999999999999999999998775543
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.19 Score=51.75 Aligned_cols=72 Identities=10% Similarity=0.126 Sum_probs=53.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
.+++|.|+ |.+|+.++++|.++|++|+++++++++.++..+ .....+.+|.++++..+++-
T Consensus 418 ~hiiI~G~-G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~------------~g~~~i~GD~~~~~~L~~a~------ 478 (558)
T PRK10669 418 NHALLVGY-GRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE------------RGIRAVLGNAANEEIMQLAH------ 478 (558)
T ss_pred CCEEEECC-ChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH------------CCCeEEEcCCCCHHHHHhcC------
Confidence 56788888 899999999999999999999999887655531 23678899999977655431
Q ss_pred CCCeeEEEEcC
Q psy13409 97 ESAIHLLINNA 107 (330)
Q Consensus 97 ~g~iDvlInnA 107 (330)
..+.|.++...
T Consensus 479 i~~a~~viv~~ 489 (558)
T PRK10669 479 LDCARWLLLTI 489 (558)
T ss_pred ccccCEEEEEc
Confidence 12456555544
|
|
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=93.69 E-value=1.1 Score=45.04 Aligned_cols=116 Identities=14% Similarity=0.064 Sum_probs=71.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHC---C----CEEEEEec--ChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKR---G----ARVIMACR--SLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVR 87 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~---G----~~Vil~~R--~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~ 87 (330)
-+|+||||+|-||+++.-.+++- | ..+++++. +.+.++...-+++....... ..+.+. .| +.+
T Consensus 124 ~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll--~~v~i~-~~--~~e--- 195 (452)
T cd05295 124 LQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLL--RGISVT-TD--LDV--- 195 (452)
T ss_pred eEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhc--CCcEEE-EC--CHH---
Confidence 46999999999999999999973 4 24677777 56777766666665431111 122222 11 111
Q ss_pred HHHHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCC--CeEEEEcC
Q psy13409 88 KCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAP--ARIINLSS 156 (330)
Q Consensus 88 ~l~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~--g~IV~iSS 156 (330)
.+...|++|..+|....+ .+ +-.+.++.|..- ++...+.+.+... .+|+.+.|
T Consensus 196 --------a~~daDvvIitag~prk~-G~---~R~DLL~~N~~I----fk~~g~~I~~~a~~~~~VlVv~t 250 (452)
T cd05295 196 --------AFKDAHVIVLLDDFLIKE-GE---DLEGCIRSRVAI----CQLYGPLIEKNAKEDVKVIVAGR 250 (452)
T ss_pred --------HhCCCCEEEECCCCCCCc-CC---CHHHHHHHHHHH----HHHHHHHHHHhCCCCCeEEEEeC
Confidence 123569999999976432 22 234445555554 6666666666655 66777665
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.75 Score=43.21 Aligned_cols=46 Identities=24% Similarity=0.268 Sum_probs=39.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHh
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTS 63 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~ 63 (330)
++|.|.|+ |-+|..+|..|+..|+.|++.+++++.+++..+.+.+.
T Consensus 6 ~~V~ViGa-G~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~ 51 (286)
T PRK07819 6 QRVGVVGA-GQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKS 51 (286)
T ss_pred cEEEEEcc-cHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHH
Confidence 36888888 89999999999999999999999999888766665443
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.3 Score=51.68 Aligned_cols=82 Identities=22% Similarity=0.227 Sum_probs=58.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCC--EEEEEecCh------------------hHHHHHHHHHHHhhcccCCCCe
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGA--RVIMACRSL------------------EKAETAADDIRTSLKDVKDAGE 72 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~------------------~~l~~~~~~l~~~~~~~~~~~~ 72 (330)
+|++.+|+|.|. | +|..++..|+..|. ++++++.+. .|.+.+.+.+.+ +++..+
T Consensus 104 ~L~~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~----inp~i~ 177 (722)
T PRK07877 104 RLGRLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAE----LDPYLP 177 (722)
T ss_pred HHhcCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHH----HCCCCE
Confidence 588999999999 4 99999999999994 899988642 233333333433 346778
Q ss_pred EEEEEccCCCHHHHHHHHHHHHhcCCCeeEEEEcCC
Q psy13409 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAG 108 (330)
Q Consensus 73 v~~i~~Dls~~~si~~l~~~i~~~~g~iDvlInnAG 108 (330)
|..+...++ ++.++.+++ ..|++|.|.-
T Consensus 178 v~~~~~~i~-~~n~~~~l~-------~~DlVvD~~D 205 (722)
T PRK07877 178 VEVFTDGLT-EDNVDAFLD-------GLDVVVEECD 205 (722)
T ss_pred EEEEeccCC-HHHHHHHhc-------CCCEEEECCC
Confidence 888888887 455655543 3588888774
|
|
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.52 Score=45.36 Aligned_cols=80 Identities=21% Similarity=0.253 Sum_probs=52.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCH-HHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSL-KSVRKCAQ 91 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~-~si~~l~~ 91 (330)
-.|.+++|.|+ |+||...+..+...|+ +|++++++.++.+.+ +.+ +... + .|..+. +++.+.+.
T Consensus 186 ~~g~~VlV~G~-g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~-~~~---------Ga~~-~--i~~~~~~~~~~~~v~ 251 (369)
T cd08301 186 KKGSTVAIFGL-GAVGLAVAEGARIRGASRIIGVDLNPSKFEQA-KKF---------GVTE-F--VNPKDHDKPVQEVIA 251 (369)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHc---------CCce-E--EcccccchhHHHHHH
Confidence 36899999986 8999998888888898 799999998765543 222 2211 1 133221 23444444
Q ss_pred HHHhcCCCeeEEEEcCCC
Q psy13409 92 EILDNESAIHLLINNAGV 109 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~ 109 (330)
++.. +.+|++|.+.|.
T Consensus 252 ~~~~--~~~d~vid~~G~ 267 (369)
T cd08301 252 EMTG--GGVDYSFECTGN 267 (369)
T ss_pred HHhC--CCCCEEEECCCC
Confidence 4332 268999999873
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >COG5322 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.18 Score=46.77 Aligned_cols=46 Identities=20% Similarity=0.169 Sum_probs=40.8
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAA 57 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~ 57 (330)
.++++-++.|.|++|.||.++++.|+.++....++.|..+..++..
T Consensus 163 idlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~ 208 (351)
T COG5322 163 IDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQR 208 (351)
T ss_pred cCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhh
Confidence 4789999999999999999999999999999999999877655544
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.46 E-value=1.2 Score=42.10 Aligned_cols=110 Identities=20% Similarity=0.232 Sum_probs=68.2
Q ss_pred EEcCCCchHHHHHHHHHHCCC--EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhcCC
Q psy13409 21 VTGSNTGIGKCTANELAKRGA--RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNES 98 (330)
Q Consensus 21 ITGas~gIG~aia~~L~~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~~g 98 (330)
|.|+ |.||.+++..|+..+. .+++++++.+.+.....+++...... ..++.+.. .+.+. +.
T Consensus 1 iIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~--~~~~~i~~---~~~~~-----------~~ 63 (299)
T TIGR01771 1 IIGA-GNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFL--PTPKKIRS---GDYSD-----------CK 63 (299)
T ss_pred CCCc-CHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhccc--CCCeEEec---CCHHH-----------HC
Confidence 4565 9999999999998885 69999999887777777776542211 12222221 22221 13
Q ss_pred CeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEc
Q psy13409 99 AIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLS 155 (330)
Q Consensus 99 ~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iS 155 (330)
.-|++|..||....+ .++. .+.+..|..- ++.+.+.+.+.+ .+.+|++|
T Consensus 64 daDivVitag~~rk~-g~~R---~dll~~N~~i----~~~~~~~i~~~~p~~~vivvs 113 (299)
T TIGR01771 64 DADLVVITAGAPQKP-GETR---LELVGRNVRI----MKSIVPEVVKSGFDGIFLVAT 113 (299)
T ss_pred CCCEEEECCCCCCCC-CCCH---HHHHHHHHHH----HHHHHHHHHHhCCCeEEEEeC
Confidence 459999999986433 2332 3445555544 666666666655 45566655
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.19 Score=47.24 Aligned_cols=40 Identities=30% Similarity=0.354 Sum_probs=36.1
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChh
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLE 51 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~ 51 (330)
.++.||+++|.|.|.-+|+-++..|.++|++|+++.+...
T Consensus 154 i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~ 193 (285)
T PRK14189 154 IPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTR 193 (285)
T ss_pred CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCC
Confidence 5799999999999999999999999999999998876543
|
|
| >KOG0069|consensus | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.27 Score=47.27 Aligned_cols=71 Identities=23% Similarity=0.301 Sum_probs=47.1
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhc--ccCCCCeEEEEEccCCC
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLK--DVKDAGEVVIRQLDLSS 82 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~--~~~~~~~v~~i~~Dls~ 82 (330)
..++.||++.|.|. |.||.+++++|-..|..+....|++...+...+...+... ..-...++..+.|-++.
T Consensus 157 g~~~~gK~vgilG~-G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~ivv~~pLt~ 229 (336)
T KOG0069|consen 157 GYDLEGKTVGILGL-GRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIVVNCPLTK 229 (336)
T ss_pred cccccCCEEEEecC-cHHHHHHHHhhhhccceeeeecccCCchhhHHHhcccccCHHHHHhhCCEEEEecCCCH
Confidence 35789999999999 9999999999999997777778876544444332221000 00124556666666554
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.49 Score=45.16 Aligned_cols=114 Identities=18% Similarity=0.131 Sum_probs=64.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHCCC--EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRGA--RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
++.|+|++|.||.+++..|+..+. .+++++++. . ....-++.... ...++.....| +++ .+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~-a-~g~a~DL~~~~----~~~~i~~~~~~----~~~-------~~ 63 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG-A-AGVAADLSHIP----TAASVKGFSGE----EGL-------EN 63 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC-C-cEEEchhhcCC----cCceEEEecCC----Cch-------HH
Confidence 478999999999999999998885 699999876 1 11111222110 00111110000 011 11
Q ss_pred cCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCC-CeEEEEcC
Q psy13409 96 NESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAP-ARIINLSS 156 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~-g~IV~iSS 156 (330)
....-|++|..||....+ . .+-.+.+..|.. +++.+.+.+.+... +.+|++|=
T Consensus 64 ~~~daDivvitaG~~~~~-g---~~R~dll~~N~~----I~~~i~~~i~~~~p~~iiivvsN 117 (312)
T TIGR01772 64 ALKGADVVVIPAGVPRKP-G---MTRDDLFNVNAG----IVKDLVAAVAESCPKAMILVITN 117 (312)
T ss_pred HcCCCCEEEEeCCCCCCC-C---ccHHHHHHHhHH----HHHHHHHHHHHhCCCeEEEEecC
Confidence 223569999999976432 2 223444556665 56777777766654 44555543
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >cd05282 ETR_like 2-enoyl thioester reductase-like | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.48 Score=44.11 Aligned_cols=42 Identities=21% Similarity=0.245 Sum_probs=36.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAET 55 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~ 55 (330)
-.|.+++|.|+++++|.+++..+...|++|+++.++.++.+.
T Consensus 137 ~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~ 178 (323)
T cd05282 137 PPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEE 178 (323)
T ss_pred CCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHHHH
Confidence 368899999999999999999999999999999888766443
|
2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman |
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.31 Score=37.39 Aligned_cols=40 Identities=30% Similarity=0.364 Sum_probs=32.9
Q ss_pred EEEEcCCCchHHHHHHHHHHCC---CEEEEE-ecChhHHHHHHHH
Q psy13409 19 AIVTGSNTGIGKCTANELAKRG---ARVIMA-CRSLEKAETAADD 59 (330)
Q Consensus 19 aLITGas~gIG~aia~~L~~~G---~~Vil~-~R~~~~l~~~~~~ 59 (330)
+.|. |+|.+|.++++.|++.| .+|.++ .|++++.++..++
T Consensus 2 I~iI-G~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~ 45 (96)
T PF03807_consen 2 IGII-GAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKE 45 (96)
T ss_dssp EEEE-STSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHH
T ss_pred EEEE-CCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHh
Confidence 4555 45999999999999999 899865 9999887776655
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.2 Score=49.77 Aligned_cols=42 Identities=33% Similarity=0.403 Sum_probs=37.6
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKA 53 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l 53 (330)
+..+.|++++|+|. |.||+.++..|...|++|+++++++.+.
T Consensus 207 ~~~l~Gk~VlViG~-G~IG~~vA~~lr~~Ga~ViV~d~dp~ra 248 (425)
T PRK05476 207 NVLIAGKVVVVAGY-GDVGKGCAQRLRGLGARVIVTEVDPICA 248 (425)
T ss_pred cCCCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCchhh
Confidence 34579999999998 7999999999999999999999987664
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=93.28 E-value=2.6 Score=36.24 Aligned_cols=77 Identities=13% Similarity=0.151 Sum_probs=52.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
.++++++=.|++.|. ++..+++.+.+|+.++.++..++.+.+.+... +.++.++.+|+.+..
T Consensus 18 ~~~~~vLdlG~G~G~---~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~~d~~~~~--------- 79 (179)
T TIGR00537 18 LKPDDVLEIGAGTGL---VAIRLKGKGKCILTTDINPFAVKELRENAKLN------NVGLDVVMTDLFKGV--------- 79 (179)
T ss_pred cCCCeEEEeCCChhH---HHHHHHhcCCEEEEEECCHHHHHHHHHHHHHc------CCceEEEEccccccc---------
Confidence 566788888876553 44455566778999999998877766665432 346778888875421
Q ss_pred HhcCCCeeEEEEcCCCCC
Q psy13409 94 LDNESAIHLLINNAGVMM 111 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~ 111 (330)
.+..|+++.|.....
T Consensus 80 ---~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 80 ---RGKFDVILFNPPYLP 94 (179)
T ss_pred ---CCcccEEEECCCCCC
Confidence 136799999876543
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.27 Score=46.25 Aligned_cols=42 Identities=21% Similarity=0.302 Sum_probs=37.3
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKA 53 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l 53 (330)
.+++||+++|.|.|.-+|+-++..|.++|++|+++......+
T Consensus 154 i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t~~l 195 (284)
T PRK14190 154 IDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKTKNL 195 (284)
T ss_pred CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCchhH
Confidence 579999999999999999999999999999999987655433
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=93.21 E-value=1.3 Score=39.76 Aligned_cols=84 Identities=18% Similarity=0.132 Sum_probs=55.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhc-------ccCCCCeEEEEEccCCCHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLK-------DVKDAGEVVIRQLDLSSLKSVR 87 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~-------~~~~~~~v~~i~~Dls~~~si~ 87 (330)
.+.+||+.|++.| .-+..|+++|++|+.++.++..++...++-..... ......++.++.+|+.+.+.
T Consensus 34 ~~~rvLd~GCG~G---~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~-- 108 (213)
T TIGR03840 34 AGARVFVPLCGKS---LDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA-- 108 (213)
T ss_pred CCCeEEEeCCCch---hHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCc--
Confidence 6789999998766 45667889999999999999988765332110000 00024578889999987542
Q ss_pred HHHHHHHhcCCCeeEEEEcCCCC
Q psy13409 88 KCAQEILDNESAIHLLINNAGVM 110 (330)
Q Consensus 88 ~l~~~i~~~~g~iDvlInnAG~~ 110 (330)
+..+..|.++..+...
T Consensus 109 -------~~~~~fD~i~D~~~~~ 124 (213)
T TIGR03840 109 -------ADLGPVDAVYDRAALI 124 (213)
T ss_pred -------ccCCCcCEEEechhhc
Confidence 1123567777665443
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.37 Score=46.47 Aligned_cols=41 Identities=27% Similarity=0.313 Sum_probs=33.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETA 56 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~ 56 (330)
.|++++|.|+ |+||..++..+...|++|++++.+.++..+.
T Consensus 183 ~g~~VlV~G~-G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~ 223 (360)
T PLN02586 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISSSSNKEDEA 223 (360)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCcchhhhH
Confidence 6899999775 9999999988888899998888776654433
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.24 Score=46.62 Aligned_cols=41 Identities=24% Similarity=0.303 Sum_probs=37.2
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEK 52 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~ 52 (330)
.++.||.++|.|-|.-+|+-++..|.++|++|+++.+....
T Consensus 155 i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~ 195 (285)
T PRK10792 155 IDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKN 195 (285)
T ss_pred CCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCC
Confidence 57899999999999999999999999999999999876543
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.59 Score=45.15 Aligned_cols=78 Identities=18% Similarity=0.294 Sum_probs=50.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
.|.+++|.|+ |+||...+..+...|+ +|+++++++++++.+ +++ +.. ...|..+++-.+.+ .+.
T Consensus 191 ~g~~VlV~G~-G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a-~~~---------Ga~---~~i~~~~~~~~~~i-~~~ 255 (371)
T cd08281 191 PGQSVAVVGL-GGVGLSALLGAVAAGASQVVAVDLNEDKLALA-REL---------GAT---ATVNAGDPNAVEQV-REL 255 (371)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHH-HHc---------CCc---eEeCCCchhHHHHH-HHH
Confidence 5899999985 8999998888888899 699999988776543 222 221 11233333222222 222
Q ss_pred HhcCCCeeEEEEcCCC
Q psy13409 94 LDNESAIHLLINNAGV 109 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~ 109 (330)
. .+.+|++|.+.|.
T Consensus 256 ~--~~g~d~vid~~G~ 269 (371)
T cd08281 256 T--GGGVDYAFEMAGS 269 (371)
T ss_pred h--CCCCCEEEECCCC
Confidence 1 2368999999874
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.63 Score=43.04 Aligned_cols=41 Identities=32% Similarity=0.426 Sum_probs=33.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCE-EEEEecChhHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGAR-VIMACRSLEKAET 55 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~-Vil~~R~~~~l~~ 55 (330)
..|++++|.|+ |+||...+..+...|++ |+++++++++++.
T Consensus 119 ~~g~~VlV~G~-G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~ 160 (280)
T TIGR03366 119 LKGRRVLVVGA-GMLGLTAAAAAAAAGAARVVAADPSPDRREL 160 (280)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHH
Confidence 37899999987 89999998888888986 8888888776543
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=93.08 E-value=2.8 Score=39.72 Aligned_cols=116 Identities=17% Similarity=0.097 Sum_probs=63.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
+++.|.|+ |.+|..+|..|+.+|. +|++++.+.+.......++...........++.+ ..|+ + . +
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~-t~d~---~---~----~-- 67 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTG-TNNY---A---D----T-- 67 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEe-cCCH---H---H----h--
Confidence 46889997 8899999999999886 8999999766433222122211100001112211 1221 1 1 1
Q ss_pred cCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcC
Q psy13409 96 NESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSS 156 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS 156 (330)
..-|++|-++|....+ ..+ -.+.+..|..- ++.+.+.+.+.. .+.||++|-
T Consensus 68 --~~aDiVIitag~p~~~-~~s---R~~l~~~N~~i----v~~i~~~I~~~~p~~~iIv~tN 119 (305)
T TIGR01763 68 --ANSDIVVITAGLPRKP-GMS---REDLLSMNAGI----VREVTGRIMEHSPNPIIVVVSN 119 (305)
T ss_pred --CCCCEEEEcCCCCCCc-CCC---HHHHHHHHHHH----HHHHHHHHHHHCCCeEEEEecC
Confidence 2459999999976432 222 23345556555 444444444433 355666654
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.49 Score=45.30 Aligned_cols=35 Identities=31% Similarity=0.339 Sum_probs=30.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecC
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRS 49 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~ 49 (330)
..|++++|+|+ |+||...+..+...|++|++++|+
T Consensus 171 ~~g~~vlI~G~-G~vG~~a~q~ak~~G~~vi~~~~~ 205 (355)
T cd08230 171 WNPRRALVLGA-GPIGLLAALLLRLRGFEVYVLNRR 205 (355)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Confidence 36899999986 999999998777889999999984
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.4 Score=39.59 Aligned_cols=94 Identities=18% Similarity=0.275 Sum_probs=54.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEe-cChhHHHHHHHHHHHhh----cccCCCCeEEEEEccCCCHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMAC-RSLEKAETAADDIRTSL----KDVKDAGEVVIRQLDLSSLKSVRK 88 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~-R~~~~l~~~~~~l~~~~----~~~~~~~~v~~i~~Dls~~~si~~ 88 (330)
-...++-|.|+ |-+|.++++.|.+.|+.|..+. |+....++..+.+.... .+.....++. -+-+.| +.+..
T Consensus 8 ~~~l~I~iIGa-GrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv--~iavpD-daI~~ 83 (127)
T PF10727_consen 8 AARLKIGIIGA-GRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLV--FIAVPD-DAIAE 83 (127)
T ss_dssp ----EEEEECT-SCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEE--EE-S-C-CHHHH
T ss_pred CCccEEEEECC-CHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEE--EEEech-HHHHH
Confidence 34678899999 8999999999999999988874 55555555554432110 0111233443 344445 36888
Q ss_pred HHHHHHhc--CCCeeEEEEcCCCCC
Q psy13409 89 CAQEILDN--ESAIHLLINNAGVMM 111 (330)
Q Consensus 89 l~~~i~~~--~g~iDvlInnAG~~~ 111 (330)
+++++... +.+=.+++|+.|...
T Consensus 84 va~~La~~~~~~~g~iVvHtSGa~~ 108 (127)
T PF10727_consen 84 VAEQLAQYGAWRPGQIVVHTSGALG 108 (127)
T ss_dssp HHHHHHCC--S-TT-EEEES-SS--
T ss_pred HHHHHHHhccCCCCcEEEECCCCCh
Confidence 88888765 334469999999763
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >KOG0024|consensus | Back alignment and domain information |
|---|
Probab=93.03 E-value=1 Score=42.94 Aligned_cols=84 Identities=19% Similarity=0.208 Sum_probs=59.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
.|-++||.|| |-||.......-.-|+ +|++++-.+.+++.+.+ + +.++....-.-++.+.+.+.++..
T Consensus 169 ~Gs~vLV~GA-GPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---------Ga~~~~~~~~~~~~~~~~~~v~~~ 237 (354)
T KOG0024|consen 169 KGSKVLVLGA-GPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---------GATVTDPSSHKSSPQELAELVEKA 237 (354)
T ss_pred cCCeEEEECC-cHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---------CCeEEeeccccccHHHHHHHHHhh
Confidence 5899999999 8999998888888898 79999999998876544 3 444444333333444444554444
Q ss_pred HhcCCCeeEEEEcCCCC
Q psy13409 94 LDNESAIHLLINNAGVM 110 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~ 110 (330)
.... .+|+.|.|.|..
T Consensus 238 ~g~~-~~d~~~dCsG~~ 253 (354)
T KOG0024|consen 238 LGKK-QPDVTFDCSGAE 253 (354)
T ss_pred cccc-CCCeEEEccCch
Confidence 3322 489999999964
|
|
| >PRK13771 putative alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.72 Score=43.37 Aligned_cols=42 Identities=33% Similarity=0.458 Sum_probs=37.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETA 56 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~ 56 (330)
.+.+++|.|+++.+|.+++..+...|++|+++.++.++.+.+
T Consensus 162 ~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~~ 203 (334)
T PRK13771 162 KGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIV 203 (334)
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 588999999999999999999999999999999988776554
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.61 Score=44.84 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=35.9
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChh
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLE 51 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~ 51 (330)
.+|.||++.|.|- |.||+.+|+.|...|++|++.+|+..
T Consensus 146 ~~L~gktvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~ 184 (333)
T PRK13243 146 YDVYGKTIGIIGF-GRIGQAVARRAKGFGMRILYYSRTRK 184 (333)
T ss_pred cCCCCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 4699999999999 99999999999999999999998754
|
|
| >cd08246 crotonyl_coA_red crotonyl-CoA reductase | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.93 Score=44.02 Aligned_cols=43 Identities=26% Similarity=0.354 Sum_probs=36.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETA 56 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~ 56 (330)
-.|.+++|+|++++||.+++..+...|++++++.++.++.+.+
T Consensus 192 ~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~ 234 (393)
T cd08246 192 KPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYC 234 (393)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH
Confidence 3588999999999999999988888999998888887765544
|
Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma |
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.94 Score=45.84 Aligned_cols=36 Identities=31% Similarity=0.315 Sum_probs=32.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL 50 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~ 50 (330)
+++++++|.|. |+.|.++|+.|.++|+.|.+.+...
T Consensus 5 ~~~~~i~v~G~-G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 5 LQGPMVLVLGL-GESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred cCCCEEEEEee-cHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 67899999997 6889999999999999999998764
|
|
| >cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1 | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.6 Score=44.19 Aligned_cols=35 Identities=29% Similarity=0.581 Sum_probs=31.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecC
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRS 49 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~ 49 (330)
.|.+++|+|+++++|.+++......|++|+++.++
T Consensus 162 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~ 196 (350)
T cd08248 162 AGKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST 196 (350)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc
Confidence 49999999999999999999988999998888765
|
Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.25 Score=46.30 Aligned_cols=42 Identities=24% Similarity=0.252 Sum_probs=36.8
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEK 52 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~ 52 (330)
..+++||.++|.|.|.-+|+-++..|.++|++|.++.+....
T Consensus 152 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T~~ 193 (281)
T PRK14183 152 EIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFTKD 193 (281)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCcC
Confidence 357999999999999999999999999999999988655433
|
|
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.85 Score=43.62 Aligned_cols=40 Identities=33% Similarity=0.396 Sum_probs=34.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAET 55 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~ 55 (330)
.|+++||+| ++++|.+++..+...|+ +|++++++.++.+.
T Consensus 177 ~g~~vlI~g-~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~ 217 (361)
T cd08231 177 AGDTVVVQG-AGPLGLYAVAAAKLAGARRVIVIDGSPERLEL 217 (361)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHH
Confidence 789999997 59999999988888899 89999888776543
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.42 Score=45.87 Aligned_cols=41 Identities=32% Similarity=0.337 Sum_probs=36.8
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChh
Q psy13409 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLE 51 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~ 51 (330)
...++.||++.|.|- |.||.++|+.+...|.+|+..+|+..
T Consensus 140 ~~~~l~gktvGIiG~-GrIG~avA~r~~~Fgm~v~y~~~~~~ 180 (324)
T COG1052 140 LGFDLRGKTLGIIGL-GRIGQAVARRLKGFGMKVLYYDRSPN 180 (324)
T ss_pred cccCCCCCEEEEECC-CHHHHHHHHHHhcCCCEEEEECCCCC
Confidence 345799999999998 99999999999988999999999874
|
|
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.26 Score=46.39 Aligned_cols=42 Identities=29% Similarity=0.351 Sum_probs=37.5
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKA 53 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l 53 (330)
.+++||+++|.|.|.-+|+-++..|.++|++|+++.+....+
T Consensus 151 i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T~~l 192 (287)
T PRK14173 151 IPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKTQDL 192 (287)
T ss_pred CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCCCCH
Confidence 579999999999999999999999999999999887765443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 330 | ||||
| 3rd5_A | 291 | Crystal Structure Of A Putative Uncharacterized Pro | 1e-33 | ||
| 1k2w_A | 256 | Crystal Structure Of Sorbitol Dehydrogenase From R. | 4e-12 | ||
| 1yxm_A | 303 | Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa | 5e-12 | ||
| 2pnf_A | 248 | Structure Of Aquifex Aeolicus Fabg 3-oxoacyl-(acyl- | 2e-11 | ||
| 2hq1_A | 247 | Crystal Structure Of Orf 1438 A Putative GlucoseRIB | 2e-09 | ||
| 3ftp_A | 270 | Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote | 2e-09 | ||
| 2b4q_A | 276 | Pseudomonas Aeruginosa RhlgNADP ACTIVE-Site Complex | 3e-09 | ||
| 3tzc_A | 251 | Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote | 3e-09 | ||
| 3rsh_A | 251 | Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)reduc | 4e-09 | ||
| 3tzh_A | 251 | Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote | 5e-09 | ||
| 3rkr_A | 262 | Crystal Structure Of A Metagenomic Short-Chain Oxid | 8e-09 | ||
| 3tfo_A | 264 | Crystal Structure Of A Putative 3-Oxoacyl-(Acyl-Car | 1e-08 | ||
| 3qiv_A | 253 | Crystal Structure Of A Putative Short-Chain Dehydro | 2e-08 | ||
| 3tzk_A | 251 | Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote | 3e-08 | ||
| 3u09_A | 251 | Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote | 4e-08 | ||
| 2c07_A | 285 | Oxoacyl-Acp Reductase Of Plasmodium Falciparum Leng | 6e-08 | ||
| 3op4_A | 248 | Crystal Structure Of Putative 3-Ketoacyl-(Acyl-Carr | 6e-08 | ||
| 4e6p_A | 259 | Crystal Structure Of A Probable Sorbitol Dehydrogen | 8e-08 | ||
| 2et6_A | 604 | (3r)-Hydroxyacyl-Coa Dehydrogenase Domain Of Candid | 9e-08 | ||
| 3rku_A | 287 | Substrate Fingerprint And The Structure Of Nadp+ De | 1e-07 | ||
| 2uvd_A | 246 | The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier | 1e-07 | ||
| 3t4x_A | 267 | Short Chain DehydrogenaseREDUCTASE FAMILY OXIDOREDU | 2e-07 | ||
| 4afn_A | 269 | Crystal Structure Of 3-ketoacyl-(acyl-carrier-prote | 4e-07 | ||
| 4dbz_A | 281 | Crystal Structure Of V151l Actinorhodin Polyketide | 4e-07 | ||
| 4dc1_A | 281 | Crystal Structure Of Y202f Actinorhodin Polyketide | 5e-07 | ||
| 1w4z_A | 281 | Structure Of Actinorhodin Polyketide (Actiii) Reduc | 5e-07 | ||
| 4dc0_A | 281 | Crystal Structure Of F189w Actinorhodin Polyketide | 5e-07 | ||
| 2rh4_A | 277 | Actinorhodin Ketoreductase, Actkr, With Nadph And I | 5e-07 | ||
| 1x7g_A | 261 | Actinorhodin Polyketide Ketoreductase, Act Kr, With | 5e-07 | ||
| 3oec_A | 317 | Crystal Structure Of Carveol Dehydrogenase From Myc | 5e-07 | ||
| 3csd_B | 281 | Actinorhodin Polyketide Ketoreductase Mutant P94l B | 5e-07 | ||
| 2rhr_B | 277 | P94l Actinorhodin Ketordeuctase Mutant, With Nadph | 6e-07 | ||
| 3tn7_A | 257 | Crystal Structure Of Short-Chain Alcohol Dehydrogen | 6e-07 | ||
| 3v2h_A | 281 | The Crystal Structure Of D-Beta-Hydroxybutyrate Deh | 6e-07 | ||
| 1q7c_A | 244 | The Structure Of Betaketoacyl-[acp] Reductase Y151f | 8e-07 | ||
| 1i01_A | 244 | Crystal Structure Of Beta-Ketoacyl [acyl Carrier Pr | 8e-07 | ||
| 3tzq_B | 271 | Crystal Structure Of A Short-Chain Type Dehydrogena | 1e-06 | ||
| 3asu_A | 248 | Crystal Structure Of Serine Dehydrogenase From Esch | 1e-06 | ||
| 1ae1_A | 273 | Tropinone Reductase-I Complex With Nadp Length = 27 | 1e-06 | ||
| 3ai3_A | 263 | The Crystal Structure Of L-Sorbose Reductase From G | 1e-06 | ||
| 3ai1_A | 263 | The Crystal Structure Of L-Sorbose Reductase From G | 1e-06 | ||
| 4fn4_A | 254 | Short-chain Nad(h)-dependent Dehydrogenase/reductas | 1e-06 | ||
| 3l77_A | 235 | X-Ray Structure Alcohol Dehydrogenase From Archaeon | 1e-06 | ||
| 1wmb_A | 260 | Crystal Structure Of Nad Dependent D-3-Hydroxybutyl | 2e-06 | ||
| 1rwb_A | 261 | Cooperative Effect Of Two Surface Amino Acid Mutati | 2e-06 | ||
| 2ztm_A | 260 | T190s Mutant Of D-3-Hydroxybutyrate Dehydrogenase L | 2e-06 | ||
| 1g6k_A | 261 | Crystal Structure Of Glucose Dehydrogenase Mutant E | 2e-06 | ||
| 1gee_A | 261 | Crystal Structure Of Glucose Dehydrogenase Mutant Q | 2e-06 | ||
| 2ztu_A | 260 | T190a Mutant Of D-3-Hydroxybutyrate Dehydrogenase C | 2e-06 | ||
| 1gco_A | 261 | Crystal Structure Of Glucose Dehydrogenase Complexe | 2e-06 | ||
| 3uf0_A | 273 | Crystal Structure Of A Putative Nad(P) Dependent Gl | 2e-06 | ||
| 3sj7_A | 252 | Structure Of Beta-Ketoacetyl-Coa Reductase (Fabg) F | 2e-06 | ||
| 1zbq_A | 327 | Crystal Structure Of Human 17-beta-hydroxysteroid D | 2e-06 | ||
| 2ew8_A | 249 | Crystal Structure Of The (s)-specific 1-phenylethan | 2e-06 | ||
| 3awd_A | 260 | Crystal Structure Of Gox2181 Length = 260 | 3e-06 | ||
| 2yz7_A | 260 | X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase F | 4e-06 | ||
| 2gdz_A | 267 | Crystal Structure Of 15-Hydroxyprostaglandin Dehydr | 5e-06 | ||
| 3tjr_A | 301 | Crystal Structure Of A Rv0851c Ortholog Short Chain | 5e-06 | ||
| 3lyl_A | 247 | Structure Of 3-Oxoacyl-Acylcarrier Protein Reductas | 6e-06 | ||
| 1nxq_A | 251 | Crystal Structure Of R-Alcohol Dehydrogenase (Radh) | 7e-06 | ||
| 3rih_A | 293 | Crystal Structure Of A Putative Short Chain Dehydro | 7e-06 | ||
| 1xkq_A | 280 | Crystal Structure Of Short-Chain DehydrogenaseREDUC | 8e-06 | ||
| 3o26_A | 311 | The Structure Of Salutaridine Reductase From Papave | 9e-06 | ||
| 3itd_A | 270 | Crystal Structure Of An Inactive 17beta-Hydroxyster | 9e-06 | ||
| 3is3_A | 270 | Crystal Structure Of 17beta-Hydroxysteroid Dehydrog | 1e-05 | ||
| 3sx2_A | 278 | Crystal Structure Of A Putative 3-Ketoacyl-(Acyl-Ca | 1e-05 | ||
| 1zjy_A | 251 | Structure Of R-Specific Alcohol Dehydrogenase (Muta | 1e-05 | ||
| 1gz6_A | 319 | (3r)-Hydroxyacyl-Coa Dehydrogenase Fragment Of Rat | 1e-05 | ||
| 3pk0_A | 262 | Crystal Structure Of Short-Chain DehydrogenaseREDUC | 1e-05 | ||
| 1ahi_A | 255 | 7 Alpha-Hydroxysteroid Dehydrogenase Complexed With | 1e-05 | ||
| 3osu_A | 246 | Crystal Structure Of The 3-Oxoacyl-Acyl Carrier Pro | 1e-05 | ||
| 1vl8_A | 267 | Crystal Structure Of Gluconate 5-dehydrogenase (tm0 | 2e-05 | ||
| 1spx_A | 278 | Crystal Structure Of Glucose Dehydrogenase Of Caeno | 2e-05 | ||
| 2cf2_E | 226 | Architecture Of Mammalian Fatty Acid Synthase Lengt | 2e-05 | ||
| 3imf_A | 257 | 1.99 Angstrom Resolution Crystal Structure Of A Sho | 3e-05 | ||
| 2nwq_A | 272 | Short Chain Dehydrogenase From Pseudomonas Aerugino | 3e-05 | ||
| 1xhl_A | 297 | Crystal Structure Of Putative Tropinone Reductase-I | 4e-05 | ||
| 3n74_A | 261 | Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote | 4e-05 | ||
| 3ioy_A | 319 | Structure Of Putative Short-Chain Dehydrogenase (Sa | 4e-05 | ||
| 3afm_A | 258 | Crystal Structure Of Aldose Reductase A1-R Responsi | 5e-05 | ||
| 3kvo_A | 346 | Crystal Structure Of The Catalytic Domain Of Human | 5e-05 | ||
| 3r1i_A | 276 | Crystal Structure Of A Short-Chain Type Dehydrogena | 6e-05 | ||
| 4ibo_A | 271 | Crystal Structure Of A Putative Gluconate Dehydroge | 6e-05 | ||
| 3s55_A | 281 | Crystal Structure Of A Putative Short-Chain Dehydro | 6e-05 | ||
| 3u0b_A | 454 | Crystal Structure Of An Oxidoreductase From Mycobac | 7e-05 | ||
| 3ay6_A | 269 | Crystal Structure Of Bacillus Megaterium Glucose De | 7e-05 | ||
| 3i4f_A | 264 | Structure Of Putative 3-oxoacyl-reductase From Baci | 7e-05 | ||
| 3ay7_A | 269 | Crystal Structure Of Bacillus Megaterium Glucose De | 8e-05 | ||
| 2q2q_A | 255 | Structure Of D-3-Hydroxybutyrate Dehydrogenase From | 8e-05 | ||
| 3aus_A | 269 | Crystal Structure Of Bacillus Megaterium Glucose De | 8e-05 | ||
| 3nyw_A | 250 | Crystal Structure Of A Betaketoacyl-[acp] Reductase | 8e-05 | ||
| 4iin_A | 271 | Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Car | 9e-05 | ||
| 3icc_A | 255 | Crystal Structure Of A Putative 3-Oxoacyl-(Acyl Car | 1e-04 | ||
| 2z1n_A | 260 | Crystal Structure Of Ape0912 From Aeropyrum Pernix | 1e-04 | ||
| 3oml_A | 613 | Structure Of Full-Length Peroxisomal Multifunctiona | 1e-04 | ||
| 4g81_D | 255 | Crystal Structure Of A Hexonate Dehydrogenase Ortho | 1e-04 | ||
| 3ak4_A | 263 | Crystal Structure Of Nadh-Dependent Quinuclidinone | 1e-04 | ||
| 3ndr_A | 247 | Crystal Structure Of Tetrameric Pyridoxal 4-Dehydro | 2e-04 | ||
| 3nug_A | 247 | Crystal Structure Of Wild Type Tetrameric Pyridoxal | 2e-04 | ||
| 2ehd_A | 234 | Crystal Structure Analysis Of Oxidoreductase Length | 2e-04 | ||
| 4dqx_A | 277 | Crystal Structure Of A Short Chain Dehydrogenase Fr | 2e-04 | ||
| 3m1l_A | 432 | Crystal Strucutre Of A C-Terminal Trunacted Mutant | 2e-04 | ||
| 3q6i_A | 446 | Crystal Structure Of Fabg4 And Coenzyme Binary Comp | 2e-04 | ||
| 3f9i_A | 249 | Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote | 2e-04 | ||
| 3v1t_C | 462 | Crystal Structure Of A Putative Ketoacyl Reductase | 2e-04 | ||
| 4fw8_A | 454 | Crystal Structure Of Fabg4 Complexed With Coenzyme | 2e-04 | ||
| 3lls_A | 475 | Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote | 3e-04 | ||
| 3ezl_A | 256 | Crystal Structure Of Acetyacetyl-Coa Reductase From | 3e-04 | ||
| 1xse_A | 295 | Crystal Structure Of Guinea Pig 11beta-Hydroxystero | 3e-04 | ||
| 3lz6_A | 263 | Guinea Pig 11beta Hydroxysteroid Dehydrogenase With | 3e-04 | ||
| 3g49_A | 277 | N-(Pyridin-2-Yl) Arylsulfonamide Inhibitors Of 11b- | 3e-04 | ||
| 3dwf_A | 276 | Crystal Structure Of The Guinea Pig 11beta-Hydroxys | 3e-04 | ||
| 3v2g_A | 271 | Crystal Structure Of A DehydrogenaseREDUCTASE FROM | 3e-04 | ||
| 3tox_A | 280 | Crystal Structure Of A Short Chain Dehydrogenase In | 3e-04 | ||
| 3gvc_A | 277 | Crystal Structure Of Probable Short-Chain Dehydroge | 3e-04 | ||
| 2hrb_A | 274 | Crystal Structure Of Human Carbonyl Reductase 3, Co | 4e-04 | ||
| 3ijr_A | 291 | 2.05 Angstrom Resolution Crystal Structure Of A Sho | 4e-04 | ||
| 3grp_A | 266 | 2.1 Angstrom Crystal Structure Of 3-Ketoacyl-(Acyl- | 5e-04 | ||
| 3i3o_A | 291 | 2.06 Angstrom Resolution Crystal Structure Of A Sho | 5e-04 | ||
| 3u9l_A | 324 | The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Pr | 6e-04 | ||
| 3sju_A | 279 | Hedamycin Polyketide Ketoreductase Bound To Nadph L | 6e-04 | ||
| 1ipe_A | 259 | Tropinone Reductase-Ii Complexed With Nadph Length | 7e-04 | ||
| 2ae2_A | 260 | Tropinone Reductase-Ii Complexed With Nadp+ And Pse | 7e-04 | ||
| 1xg5_A | 279 | Structure Of Human Putative Dehydrogenase Mgc4172 I | 8e-04 | ||
| 4hp8_A | 247 | Crystal Structure Of A Putative 2-Deoxy-D-Gluconate | 8e-04 | ||
| 4bb6_A | 292 | Free-Wilson And Structural Approaches To Co-Optimis | 8e-04 |
| >pdb|3RD5|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein From Mycobacterium Paratuberculosis Length = 291 | Back alignment and structure |
|
| >pdb|1K2W|A Chain A, Crystal Structure Of Sorbitol Dehydrogenase From R. Sphaeroides Length = 256 | Back alignment and structure |
|
| >pdb|1YXM|A Chain A, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa Reductase Length = 303 | Back alignment and structure |
|
| >pdb|2PNF|A Chain A, Structure Of Aquifex Aeolicus Fabg 3-oxoacyl-(acyl-carrier Protein) Reductase Length = 248 | Back alignment and structure |
|
| >pdb|2HQ1|A Chain A, Crystal Structure Of Orf 1438 A Putative GlucoseRIBITOL Dehydrogenase From Clostridium Thermocellum Length = 247 | Back alignment and structure |
|
| >pdb|3FTP|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From Burkholderia Pseudomallei At 2.05 A Resolution Length = 270 | Back alignment and structure |
|
| >pdb|2B4Q|A Chain A, Pseudomonas Aeruginosa RhlgNADP ACTIVE-Site Complex Length = 276 | Back alignment and structure |
|
| >pdb|3TZC|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase (Fabg)(Y155f) From Vibrio Cholerae Length = 251 | Back alignment and structure |
|
| >pdb|3RSH|A Chain A, Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)reductase (Fabg) From Vibrio Cholerae O1 Complexed With Nadp+ (Space Group P62) Length = 251 | Back alignment and structure |
|
| >pdb|3TZH|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase (Fabg)(F187a) From Vibrio Cholerae Length = 251 | Back alignment and structure |
|
| >pdb|3RKR|A Chain A, Crystal Structure Of A Metagenomic Short-Chain Oxidoreductase (Sdr) In Complex With Nadp Length = 262 | Back alignment and structure |
|
| >pdb|3TFO|A Chain A, Crystal Structure Of A Putative 3-Oxoacyl-(Acyl-Carrier-Protein) Reductase From Sinorhizobium Meliloti Length = 264 | Back alignment and structure |
|
| >pdb|3QIV|A Chain A, Crystal Structure Of A Putative Short-Chain Dehydrogenase Or 3- Oxoacyl-[acyl-Carrier-Protein] Reductase From Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 253 | Back alignment and structure |
|
| >pdb|3TZK|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase (Fabg)(G92a) From Vibrio Cholerae Length = 251 | Back alignment and structure |
|
| >pdb|3U09|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase (Fabg)(G92d) From Vibrio Cholerae Length = 251 | Back alignment and structure |
|
| >pdb|2C07|A Chain A, Oxoacyl-Acp Reductase Of Plasmodium Falciparum Length = 285 | Back alignment and structure |
|
| >pdb|3OP4|A Chain A, Crystal Structure Of Putative 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From Vibrio Cholerae O1 Biovar Eltor Str. N16961 In Complex With Nadp+ Length = 248 | Back alignment and structure |
|
| >pdb|4E6P|A Chain A, Crystal Structure Of A Probable Sorbitol Dehydrogenase (Target Psi- 012078) From Sinorhizobium Meliloti 1021 Length = 259 | Back alignment and structure |
|
| >pdb|2ET6|A Chain A, (3r)-Hydroxyacyl-Coa Dehydrogenase Domain Of Candida Tropicalis Peroxisomal Multifunctional Enzyme Type 2 Length = 604 | Back alignment and structure |
|
| >pdb|3RKU|A Chain A, Substrate Fingerprint And The Structure Of Nadp+ Dependent Serine Dehydrogenase From Saccharomyces Cerevisiae Complexed With Nadp+ Length = 287 | Back alignment and structure |
|
| >pdb|2UVD|A Chain A, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier Protein) Reductase From Bacillus Anthracis (Ba3989) Length = 246 | Back alignment and structure |
|
| >pdb|3T4X|A Chain A, Short Chain DehydrogenaseREDUCTASE FAMILY OXIDOREDUCTASE FROM Bacillus Anthracis Str. Ames Ancestor Length = 267 | Back alignment and structure |
|
| >pdb|4AFN|A Chain A, Crystal Structure Of 3-ketoacyl-(acyl-carrier-protein) Reductase (fabg) From Pseudomonas Aeruginosa At 2.3a Resolution Length = 269 | Back alignment and structure |
|
| >pdb|4DBZ|A Chain A, Crystal Structure Of V151l Actinorhodin Polyketide Ketoreductase With Nadph Length = 281 | Back alignment and structure |
|
| >pdb|4DC1|A Chain A, Crystal Structure Of Y202f Actinorhodin Polyketide Ketoreductase With Nadph Length = 281 | Back alignment and structure |
|
| >pdb|1W4Z|A Chain A, Structure Of Actinorhodin Polyketide (Actiii) Reductase Length = 281 | Back alignment and structure |
|
| >pdb|4DC0|A Chain A, Crystal Structure Of F189w Actinorhodin Polyketide Ketoreductase With Nadph Length = 281 | Back alignment and structure |
|
| >pdb|2RH4|A Chain A, Actinorhodin Ketoreductase, Actkr, With Nadph And Inhibitor Emodin Length = 277 | Back alignment and structure |
|
| >pdb|1X7G|A Chain A, Actinorhodin Polyketide Ketoreductase, Act Kr, With Nadp Bound Length = 261 | Back alignment and structure |
|
| >pdb|3OEC|A Chain A, Crystal Structure Of Carveol Dehydrogenase From Mycobacterium Thermoresistibile Length = 317 | Back alignment and structure |
|
| >pdb|3CSD|B Chain B, Actinorhodin Polyketide Ketoreductase Mutant P94l Bound To Nadph And The Inhibitor Emodin Length = 281 | Back alignment and structure |
|
| >pdb|2RHR|B Chain B, P94l Actinorhodin Ketordeuctase Mutant, With Nadph And Inhibitor Emodin Length = 277 | Back alignment and structure |
|
| >pdb|3TN7|A Chain A, Crystal Structure Of Short-Chain Alcohol Dehydrogenase From Hyperthermophilic Archaeon Thermococcus Sibiricus Complexed With 5- Hydroxy-Nadp Length = 257 | Back alignment and structure |
|
| >pdb|3V2H|A Chain A, The Crystal Structure Of D-Beta-Hydroxybutyrate Dehydrogenase From Sinorhizobium Meliloti Length = 281 | Back alignment and structure |
|
| >pdb|1Q7C|A Chain A, The Structure Of Betaketoacyl-[acp] Reductase Y151f Mutant In Complex With Nadph Fragment Length = 244 | Back alignment and structure |
|
| >pdb|1I01|A Chain A, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein] Reductase From E. Coli. Length = 244 | Back alignment and structure |
|
| >pdb|3TZQ|B Chain B, Crystal Structure Of A Short-Chain Type DehydrogenaseREDUCTASE FROM Mycobacterium Marinum Length = 271 | Back alignment and structure |
|
| >pdb|3ASU|A Chain A, Crystal Structure Of Serine Dehydrogenase From Escherichia Coli Length = 248 | Back alignment and structure |
|
| >pdb|1AE1|A Chain A, Tropinone Reductase-I Complex With Nadp Length = 273 | Back alignment and structure |
|
| >pdb|3AI3|A Chain A, The Crystal Structure Of L-Sorbose Reductase From Gluconobacter Frateurii Complexed With Nadph And L-Sorbose Length = 263 | Back alignment and structure |
|
| >pdb|3AI1|A Chain A, The Crystal Structure Of L-Sorbose Reductase From Gluconobacter Frateurii Complexed With Nadph And L-Sorbose Reveals The Structure Bases Of Its Catalytic Mechanism And High Substrate Selectivity Length = 263 | Back alignment and structure |
|
| >pdb|4FN4|A Chain A, Short-chain Nad(h)-dependent Dehydrogenase/reductase From Sulfolobus Acidocaldarius Length = 254 | Back alignment and structure |
|
| >pdb|3L77|A Chain A, X-Ray Structure Alcohol Dehydrogenase From Archaeon Thermococcus Sibiricus Complexed With 5-Hydroxy-Nadp Length = 235 | Back alignment and structure |
|
| >pdb|1WMB|A Chain A, Crystal Structure Of Nad Dependent D-3-Hydroxybutylate Dehydrogenase Length = 260 | Back alignment and structure |
|
| >pdb|1RWB|A Chain A, Cooperative Effect Of Two Surface Amino Acid Mutations (Q252l And E170k) Of Glucose Dehydrogenase From Bacillus Megaterium Iwg3 For The Stabilization Of Oligomeric State Length = 261 | Back alignment and structure |
|
| >pdb|2ZTM|A Chain A, T190s Mutant Of D-3-Hydroxybutyrate Dehydrogenase Length = 260 | Back alignment and structure |
|
| >pdb|1G6K|A Chain A, Crystal Structure Of Glucose Dehydrogenase Mutant E96a Complexed With Nad+ Length = 261 | Back alignment and structure |
|
| >pdb|1GEE|A Chain A, Crystal Structure Of Glucose Dehydrogenase Mutant Q252l Complexed With Nad+ Length = 261 | Back alignment and structure |
|
| >pdb|2ZTU|A Chain A, T190a Mutant Of D-3-Hydroxybutyrate Dehydrogenase Complexed With Nad+ Length = 260 | Back alignment and structure |
|
| >pdb|1GCO|A Chain A, Crystal Structure Of Glucose Dehydrogenase Complexed With Nad+ Length = 261 | Back alignment and structure |
|
| >pdb|3UF0|A Chain A, Crystal Structure Of A Putative Nad(P) Dependent Gluconate 5- Dehydrogenase From Beutenbergia Cavernae(Efi Target Efi-502044) With Bound Nadp (Low Occupancy) Length = 273 | Back alignment and structure |
|
| >pdb|3SJ7|A Chain A, Structure Of Beta-Ketoacetyl-Coa Reductase (Fabg) From Staphylococcus Aureus Complex With Nadph Length = 252 | Back alignment and structure |
|
| >pdb|1ZBQ|A Chain A, Crystal Structure Of Human 17-beta-hydroxysteroid Dehydrogenase Type 4 In Complex With Nad Length = 327 | Back alignment and structure |
|
| >pdb|2EW8|A Chain A, Crystal Structure Of The (s)-specific 1-phenylethanol Dehydrogenase Of The Denitrifying Bacterium Strain Ebn1 Length = 249 | Back alignment and structure |
|
| >pdb|3AWD|A Chain A, Crystal Structure Of Gox2181 Length = 260 | Back alignment and structure |
|
| >pdb|2YZ7|A Chain A, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From Alcaligenes Faecalis Length = 260 | Back alignment and structure |
|
| >pdb|2GDZ|A Chain A, Crystal Structure Of 15-Hydroxyprostaglandin Dehydrogenase Type1, Complexed With Nad+ Length = 267 | Back alignment and structure |
|
| >pdb|3TJR|A Chain A, Crystal Structure Of A Rv0851c Ortholog Short Chain Dehydrogenase From Mycobacterium Paratuberculosis Length = 301 | Back alignment and structure |
|
| >pdb|3LYL|A Chain A, Structure Of 3-Oxoacyl-Acylcarrier Protein Reductase, Fabg From Francisella Tularensis Length = 247 | Back alignment and structure |
|
| >pdb|1NXQ|A Chain A, Crystal Structure Of R-Alcohol Dehydrogenase (Radh) (Apoenyzme) From Lactobacillus Brevis Length = 251 | Back alignment and structure |
|
| >pdb|3RIH|A Chain A, Crystal Structure Of A Putative Short Chain Dehydrogenase Or Reductase From Mycobacterium Abscessus Length = 293 | Back alignment and structure |
|
| >pdb|1XKQ|A Chain A, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE OF Unknown Function From Caenorhabditis Elegans With Cofactor Length = 280 | Back alignment and structure |
|
| >pdb|3O26|A Chain A, The Structure Of Salutaridine Reductase From Papaver Somniferum Length = 311 | Back alignment and structure |
|
| >pdb|3ITD|A Chain A, Crystal Structure Of An Inactive 17beta-Hydroxysteroid Dehydrogenase (Y167f Mutated Form) From Fungus Cochliobolus Lunatus Length = 270 | Back alignment and structure |
|
| >pdb|3IS3|A Chain A, Crystal Structure Of 17beta-Hydroxysteroid Dehydrogenase (Apo Form) From Fungus Cochliobolus Lunatus Length = 270 | Back alignment and structure |
|
| >pdb|3SX2|A Chain A, Crystal Structure Of A Putative 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From Mycobacterium Paratuberculosis In Complex With Nad Length = 278 | Back alignment and structure |
|
| >pdb|1ZJY|A Chain A, Structure Of R-Specific Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus Brevis In Complex With Phenylethanol And Nadh Length = 251 | Back alignment and structure |
|
| >pdb|1GZ6|A Chain A, (3r)-Hydroxyacyl-Coa Dehydrogenase Fragment Of Rat Peroxisomal Multifunctional Enzyme Type 2 Length = 319 | Back alignment and structure |
|
| >pdb|3PK0|A Chain A, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE SDR FROM Mycobacterium Smegmatis Length = 262 | Back alignment and structure |
|
| >pdb|1AHI|A Chain A, 7 Alpha-Hydroxysteroid Dehydrogenase Complexed With Nadh And 7-Oxo Glycochenodeoxycholic Acid Length = 255 | Back alignment and structure |
|
| >pdb|3OSU|A Chain A, Crystal Structure Of The 3-Oxoacyl-Acyl Carrier Protein Reductase, Fabg, From Staphylococcus Aureus Length = 246 | Back alignment and structure |
|
| >pdb|1VL8|A Chain A, Crystal Structure Of Gluconate 5-dehydrogenase (tm0441) From Thermotoga Maritima At 2.07 A Resolution Length = 267 | Back alignment and structure |
|
| >pdb|1SPX|A Chain A, Crystal Structure Of Glucose Dehydrogenase Of Caenorhabditis Elegans In The Apo-Form Length = 278 | Back alignment and structure |
|
| >pdb|2CF2|E Chain E, Architecture Of Mammalian Fatty Acid Synthase Length = 226 | Back alignment and structure |
|
| >pdb|3IMF|A Chain A, 1.99 Angstrom Resolution Crystal Structure Of A Short Chain Dehydrogenase From Bacillus Anthracis Str. 'ames Ancestor' Length = 257 | Back alignment and structure |
|
| >pdb|2NWQ|A Chain A, Short Chain Dehydrogenase From Pseudomonas Aeruginosa Length = 272 | Back alignment and structure |
|
| >pdb|1XHL|A Chain A, Crystal Structure Of Putative Tropinone Reductase-Ii From Caenorhabditis Elegans With Cofactor And Substrate Length = 297 | Back alignment and structure |
|
| >pdb|3N74|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reduc Brucella Melitensis Length = 261 | Back alignment and structure |
|
| >pdb|3IOY|A Chain A, Structure Of Putative Short-Chain Dehydrogenase (Saro_0793) From Novosphingobium Aromaticivorans Length = 319 | Back alignment and structure |
|
| >pdb|3AFM|A Chain A, Crystal Structure Of Aldose Reductase A1-R Responsible For Alginate Metabolism Length = 258 | Back alignment and structure |
|
| >pdb|3KVO|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Hydroxysteroid Dehydrogenase Like 2 (Hsdl2) Length = 346 | Back alignment and structure |
|
| >pdb|3R1I|A Chain A, Crystal Structure Of A Short-Chain Type DehydrogenaseREDUCTASE FROM Mycobacterium Marinum Length = 276 | Back alignment and structure |
|
| >pdb|4IBO|A Chain A, Crystal Structure Of A Putative Gluconate Dehydrogenase From Agrobacterium Tumefaciens (Target Efi-506446) Length = 271 | Back alignment and structure |
|
| >pdb|3S55|A Chain A, Crystal Structure Of A Putative Short-Chain DehydrogenaseREDUCTASE From Mycobacterium Abscessus Bound To Nad Length = 281 | Back alignment and structure |
|
| >pdb|3U0B|A Chain A, Crystal Structure Of An Oxidoreductase From Mycobacterium Smegmatis Length = 454 | Back alignment and structure |
|
| >pdb|3AY6|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose Dehydrogenase 4 A258f Mutant In Complex With Nadh And D-Glucose Length = 269 | Back alignment and structure |
|
| >pdb|3I4F|A Chain A, Structure Of Putative 3-oxoacyl-reductase From Bacillus Thuringiensis Length = 264 | Back alignment and structure |
|
| >pdb|3AY7|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose Dehydrogenase 4 G259a Mutant Length = 269 | Back alignment and structure |
|
| >pdb|2Q2Q|A Chain A, Structure Of D-3-Hydroxybutyrate Dehydrogenase From Pseudomonas Putida Length = 255 | Back alignment and structure |
|
| >pdb|3AUS|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose Dehydrogenase 4 In Ligand-Free Form Length = 269 | Back alignment and structure |
|
| >pdb|3NYW|A Chain A, Crystal Structure Of A Betaketoacyl-[acp] Reductase (Fabg) From Bacteroides Thetaiotaomicron Length = 250 | Back alignment and structure |
|
| >pdb|4IIN|A Chain A, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier Protein]reductase From Helicobacter Pylori 26695 Complexed With Nad+ Length = 271 | Back alignment and structure |
|
| >pdb|3ICC|A Chain A, Crystal Structure Of A Putative 3-Oxoacyl-(Acyl Carrier Protein) Reductase From Bacillus Anthracis At 1.87 A Resolution Length = 255 | Back alignment and structure |
|
| >pdb|2Z1N|A Chain A, Crystal Structure Of Ape0912 From Aeropyrum Pernix K1 Length = 260 | Back alignment and structure |
|
| >pdb|3OML|A Chain A, Structure Of Full-Length Peroxisomal Multifunctional Enzyme Type 2 From Drosophila Melanogaster Length = 613 | Back alignment and structure |
|
| >pdb|4G81|D Chain D, Crystal Structure Of A Hexonate Dehydrogenase Ortholog (Target Efi- 506402 From Salmonella Enterica, Unliganded Structure Length = 255 | Back alignment and structure |
|
| >pdb|3AK4|A Chain A, Crystal Structure Of Nadh-Dependent Quinuclidinone Reductase From Agrobacterium Tumefaciens Length = 263 | Back alignment and structure |
|
| >pdb|3NDR|A Chain A, Crystal Structure Of Tetrameric Pyridoxal 4-Dehydrogenase From Mesorhizobium Loti Length = 247 | Back alignment and structure |
|
| >pdb|3NUG|A Chain A, Crystal Structure Of Wild Type Tetrameric Pyridoxal 4-Dehydrogenase From Mesorhizobium Loti Length = 247 | Back alignment and structure |
|
| >pdb|2EHD|A Chain A, Crystal Structure Analysis Of Oxidoreductase Length = 234 | Back alignment and structure |
|
| >pdb|4DQX|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase From Rhizobium Etli Cfn 42 Length = 277 | Back alignment and structure |
|
| >pdb|3M1L|A Chain A, Crystal Strucutre Of A C-Terminal Trunacted Mutant Of A Putative Ketoacyl Reductase (Fabg4) From Mycobacterium Tuberculosis H37rv At 2.5 Angstrom Resolution Length = 432 | Back alignment and structure |
|
| >pdb|3Q6I|A Chain A, Crystal Structure Of Fabg4 And Coenzyme Binary Complex Length = 446 | Back alignment and structure |
|
| >pdb|3F9I|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase Rickettsia Prowazekii Length = 249 | Back alignment and structure |
|
| >pdb|3V1T|C Chain C, Crystal Structure Of A Putative Ketoacyl Reductase (Fabg4) From Mycobacterium Tuberculosis H37rv At 1.9 Angstrom Resolution Length = 462 | Back alignment and structure |
|
| >pdb|4FW8|A Chain A, Crystal Structure Of Fabg4 Complexed With Coenzyme Nadh Length = 454 | Back alignment and structure |
|
| >pdb|3LLS|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From Mycobacterium Tuberculosis Length = 475 | Back alignment and structure |
|
| >pdb|3EZL|A Chain A, Crystal Structure Of Acetyacetyl-Coa Reductase From Burkholderia Pseudomallei 1710b Length = 256 | Back alignment and structure |
|
| >pdb|1XSE|A Chain A, Crystal Structure Of Guinea Pig 11beta-Hydroxysteroid Dehydrogenase Type 1 Length = 295 | Back alignment and structure |
|
| >pdb|3LZ6|A Chain A, Guinea Pig 11beta Hydroxysteroid Dehydrogenase With Pf-877423 Length = 263 | Back alignment and structure |
|
| >pdb|3G49|A Chain A, N-(Pyridin-2-Yl) Arylsulfonamide Inhibitors Of 11b-Hydroxysteroid Dehydrogenase Type 1: Discovery Of Pf-915275 Length = 277 | Back alignment and structure |
|
| >pdb|3DWF|A Chain A, Crystal Structure Of The Guinea Pig 11beta-Hydroxysteroid Dehydrogenase Type 1 Mutant F278e Length = 276 | Back alignment and structure |
|
| >pdb|3V2G|A Chain A, Crystal Structure Of A DehydrogenaseREDUCTASE FROM SINORHIZOBIUM Meliloti 1021 Length = 271 | Back alignment and structure |
|
| >pdb|3TOX|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase In Complex With Nad(P) From Sinorhizobium Meliloti 1021 Length = 280 | Back alignment and structure |
|
| >pdb|3GVC|A Chain A, Crystal Structure Of Probable Short-Chain Dehydrogenase- Reductase From Mycobacterium Tuberculosis Length = 277 | Back alignment and structure |
|
| >pdb|2HRB|A Chain A, Crystal Structure Of Human Carbonyl Reductase 3, Complexed With Nadp+ Length = 274 | Back alignment and structure |
|
| >pdb|3IJR|A Chain A, 2.05 Angstrom Resolution Crystal Structure Of A Short Chain Dehydrogenase From Bacillus Anthracis Str. 'ames Ancestor' In Complex With Nad+ Length = 291 | Back alignment and structure |
|
| >pdb|3GRP|A Chain A, 2.1 Angstrom Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From Bartonella Henselae Length = 266 | Back alignment and structure |
|
| >pdb|3I3O|A Chain A, 2.06 Angstrom Resolution Crystal Structure Of A Short Chain Dehydrogenase From Bacillus Anthracis Str. 'ames Ancestor' In Complex With Nad-acetone Length = 291 | Back alignment and structure |
|
| >pdb|3U9L|A Chain A, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein] Reductase (Nadph) From Sinorhizobium Meliloti Length = 324 | Back alignment and structure |
|
| >pdb|3SJU|A Chain A, Hedamycin Polyketide Ketoreductase Bound To Nadph Length = 279 | Back alignment and structure |
|
| >pdb|1IPE|A Chain A, Tropinone Reductase-Ii Complexed With Nadph Length = 259 | Back alignment and structure |
|
| >pdb|2AE2|A Chain A, Tropinone Reductase-Ii Complexed With Nadp+ And Pseudotropine Length = 260 | Back alignment and structure |
|
| >pdb|1XG5|A Chain A, Structure Of Human Putative Dehydrogenase Mgc4172 In Complex With Nadp Length = 279 | Back alignment and structure |
|
| >pdb|4HP8|A Chain A, Crystal Structure Of A Putative 2-Deoxy-D-Gluconate 3-Dehydrogenase From Agrobacterium Tumefaciens (Target Efi-506435) With Bound Nadp Length = 247 | Back alignment and structure |
|
| >pdb|4BB6|A Chain A, Free-Wilson And Structural Approaches To Co-Optimising Human And Rodent Isoform Potency For 11b-Hydroxysteroid Dehydrogenase Type 1 11b-Hsd1 Inhibitors Length = 292 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} Length = 291 | Back alignment and structure |
|---|
Score = 332 bits (854), Expect = e-114
Identities = 100/301 (33%), Positives = 135/301 (44%), Gaps = 73/301 (24%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
+T ++TG+N+G+G TA ELA+RGA VIMA R K E AA + G+
Sbjct: 13 SFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTMA---------GQ 63
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGH 132
V +R+LDL L SVR+ A + S +LINNAG+M P LT DG+E Q TNHLGH
Sbjct: 64 VEVRELDLQDLSSVRRFADGV----SGADVLINNAGIMAVPYALTVDGFESQIGTNHLGH 119
Query: 133 YLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLE-KGYSATGAYGRSKLANI 191
+ T LLLPR+ R++ +SS+AH G ++ ED+N + YS AY +SKLAN+
Sbjct: 120 FALTNLLLPRL----TDRVVTVSSMAHWPGR--INLEDLNWRSRRYSPWLAYSQSKLANL 173
Query: 192 LFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHP 251
LFT+EL +RL
Sbjct: 174 LFTSELQRRLTAA----------------------------------------------- 186
Query: 252 PGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCAL 311
G+ + A HPG T L + L + GA+ TLY A
Sbjct: 187 -GSPLR---ALAAHPGYSHTNLQGASGRKL--GDALMSAATRVVATDADFGARQTLYAAS 240
Query: 312 D 312
Sbjct: 241 Q 241
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* Length = 276 | Back alignment and structure |
|---|
Score = 248 bits (636), Expect = 7e-82
Identities = 63/341 (18%), Positives = 105/341 (30%), Gaps = 105/341 (30%)
Query: 15 DGKTAIVTGSNTGIGKCTANELAKR-GARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
A+VTG N GIG +L + V++ R + + + A ++ +
Sbjct: 3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQ------AEGLSP 56
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLT--EDGYELQFATNHLG 131
QLD+ L+S+R + + +L+NNAG+ T E+ TN G
Sbjct: 57 RFHQLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFG 116
Query: 132 HYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSM------------------------- 166
LLP I R++N+SS+ S
Sbjct: 117 TRDVCTELLPLIKPQ--GRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKF 174
Query: 167 --HFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRF 224
+ +K + AYG +K+ + + A++L
Sbjct: 175 VEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLS---------------------- 212
Query: 225 SNLTILLCDANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGT 284
G I +N A PG V T+++
Sbjct: 213 ------------------------EQRKGDKIL-LN--ACCPGWVRTDMAGPK------- 238
Query: 285 AWLYQRVGGLFIKSPLQGAQTTLYCA-LDKKCERETGLYYA 324
KSP +GA+T +Y A L E G + +
Sbjct: 239 ----------ATKSPEEGAETPVYLALLPPDAEGPHGQFVS 269
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} Length = 311 | Back alignment and structure |
|---|
Score = 202 bits (515), Expect = 2e-63
Identities = 67/379 (17%), Positives = 112/379 (29%), Gaps = 140/379 (36%)
Query: 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVK 68
+T + A+VTG N GIG +L+ G V++ CR + K A + ++ S
Sbjct: 5 CPNTVTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNS----- 59
Query: 69 DAGEVVIRQLDLSS-LKSVRKCAQEILDNESAIHLLINNAGVM----------------- 110
+ VV QLD++ + ++ A I + + +L+NNAGV
Sbjct: 60 NHENVVFHQLDVTDPIATMSSLADFIKTHFGKLDILVNNAGVAGFSVDADRFKAMISDIG 119
Query: 111 ---------------MCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLS 155
T + E N+ G T +L+P + S RI+N+S
Sbjct: 120 EDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLLQLSDSPRIVNVS 179
Query: 156 SLAHTWGDGSMH--------FEDINLEKG---------------------YSATGAYGRS 186
S + S + + E+ S AY S
Sbjct: 180 SSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTS 239
Query: 187 KLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKN 246
K +T LA ++
Sbjct: 240 KACLNAYTRVLANKIP-------------------------------------------- 255
Query: 247 VLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTT 306
VN V PG+V TE++ + +GA+
Sbjct: 256 --------KFQ-VN--CVCPGLVKTEMNYGI-----------------GNYTAEEGAEHV 287
Query: 307 LYCALDKKCERETGLYYAK 325
+ AL + +G +Y
Sbjct: 288 VRIALFPD-DGPSGFFYDC 305
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} Length = 250 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 3e-31
Identities = 49/276 (17%), Positives = 87/276 (31%), Gaps = 71/276 (25%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
AI+TG++ GIG A LA G RV++ RS + E D+I + K E
Sbjct: 4 EKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIM---RSNKHVQE 60
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQL-TEDGYELQFATNHLG 131
++ LD++ ++I A+ +L+N A + M D + N +
Sbjct: 61 PIVLPLDITDCTKADTEIKDIHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIA 120
Query: 132 HYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANI 191
Y + + I N++S A G++ G YG +K A +
Sbjct: 121 QYGILKTVTEIMKVQKNGYIFNVASRA-----AKY---------GFADGGIYGSTKFALL 166
Query: 192 LFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHP 251
L +E+
Sbjct: 167 GLAESLY----------------RELAPL------------------------------- 179
Query: 252 PGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWL 287
I V + PG V+T++++ + +
Sbjct: 180 ---GIR-VT--TLCPGWVNTDMAKKAGTPFKDEEMI 209
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* Length = 277 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 3e-30
Identities = 39/192 (20%), Positives = 70/192 (36%), Gaps = 21/192 (10%)
Query: 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKD 69
L K A +TG +GIG A + G ++A RSL + TAA + +
Sbjct: 21 CPDLLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGAT----- 75
Query: 70 AGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-MMCP-RQLTEDGYELQFAT 127
+ +D+ + +V + L I +LIN A +CP L+ + ++
Sbjct: 76 GRRCLPLSMDVRAPPAVMAAVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDI 135
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
+ G + + +L + + I+N+++ G G +K
Sbjct: 136 DTSGTFNVSRVLYEKFFRDHGGVIVNITATLGNRGQALQ--------------VHAGSAK 181
Query: 188 LANILFTTELAK 199
A T LA
Sbjct: 182 AAVDAMTRHLAV 193
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 Length = 273 | Back alignment and structure |
|---|
Score = 114 bits (289), Expect = 3e-30
Identities = 54/202 (26%), Positives = 79/202 (39%), Gaps = 32/202 (15%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L G TA+VTG + GIG ELA GARV R+ ++ + + R +
Sbjct: 18 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWR------EKGLN 71
Query: 73 VVIRQLDLSSLKSVRKCAQEILDN-ESAIHLLINNAGVMMCPRQL----TEDGYELQFAT 127
V DL S K Q + + +++L+NNAG + + TE Y + T
Sbjct: 72 VEGSVCDLLSRTERDKLMQTVAHVFDGKLNILVNNAG--VVIHKEAKDFTEKDYNIIMGT 129
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
N Y + + P + S +I LSS+A G + Y SK
Sbjct: 130 NFEAAYHLSQIAYPLLKASQNGNVIFLSSIA-----GFSALPSV---------SLYSASK 175
Query: 188 LANILFT----TELAKR-LQVN 204
A T E AK ++VN
Sbjct: 176 GAINQMTKSLACEWAKDNIRVN 197
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* Length = 260 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 3e-30
Identities = 49/202 (24%), Positives = 82/202 (40%), Gaps = 32/202 (15%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L+G TA+VTG + GIG ELA GA V R+ ++ R +
Sbjct: 6 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWR------SKGFK 59
Query: 73 VVIRQLDLSSLKSVRKCAQEILDN-ESAIHLLINNAGVMMCPRQL----TEDGYELQFAT 127
V DLSS ++ + ++ +++L+NNAG + + T + Y L +
Sbjct: 60 VEASVCDLSSRSERQELMNTVANHFHGKLNILVNNAG--IVIYKEAKDYTVEDYSLIMSI 117
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
N Y ++L P + S ++ +SS++ G++ YG +K
Sbjct: 118 NFEAAYHLSVLAHPFLKASERGNVVFISSVS-----GALAVPYE---------AVYGATK 163
Query: 188 LANILFT----TELAKR-LQVN 204
A T E AK ++VN
Sbjct: 164 GAMDQLTRCLAFEWAKDNIRVN 185
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A Length = 252 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 4e-30
Identities = 50/202 (24%), Positives = 87/202 (43%), Gaps = 24/202 (11%)
Query: 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKD 69
L+ + +VTG++ GIG+ A A+ GA VI+ R+ EK A I ++
Sbjct: 6 KQDLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHIN---EETGR 62
Query: 70 AGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM--MCP-RQLTEDGYELQFA 126
+ I L + ++ ++ AQ I N + +++NAG++ +CP + ++
Sbjct: 63 QPQWFILDLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQ 122
Query: 127 TNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRS 186
N ++ T LLP ++KS ++ SS +G + GAY S
Sbjct: 123 VNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGR--------------QGRANWGAYAAS 168
Query: 187 KLANILFT----TELAKRLQVN 204
K A E +RL+VN
Sbjct: 169 KFATEGMMQVLADEYQQRLRVN 190
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 Length = 303 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 7e-30
Identities = 50/202 (24%), Positives = 85/202 (42%), Gaps = 23/202 (11%)
Query: 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKD 69
A L G+ AIVTG TGIGK EL + G+ V++A R LE+ ++AAD+++ +L K
Sbjct: 12 APGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTK- 70
Query: 70 AGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-MMCP-RQLTEDGYELQFAT 127
V+ Q ++ + + V + LD I+ L+NN G + P ++ G+ T
Sbjct: 71 QARVIPIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLET 130
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
N G + + +K I+N+ G+ G ++
Sbjct: 131 NLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKA---------------GFPLAVHSGAAR 175
Query: 188 LANILFT----TELAKR-LQVN 204
T E A +++N
Sbjct: 176 AGVYNLTKSLALEWACSGIRIN 197
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} Length = 346 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 1e-29
Identities = 41/192 (21%), Positives = 81/192 (42%), Gaps = 15/192 (7%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG- 71
RL G T +TG++ GIGK A + AK GA +++A ++ + I T+ ++++ G
Sbjct: 42 RLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGG 101
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMM--CPRQLTEDGYELQFATNH 129
+ + +D+ + + ++ + I +L+NNA + +L N
Sbjct: 102 KALPCIVDVRDEQQISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNT 161
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
G YL + +P + KS A I+N+S + + AY +K
Sbjct: 162 RGTYLASKACIPYLKKSKVAHILNISPPLNLNP------------VWFKQHCAYTIAKYG 209
Query: 190 NILFTTELAKRL 201
++ +A+
Sbjct: 210 MSMYVLGMAEEF 221
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* Length = 255 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 2e-29
Identities = 44/201 (21%), Positives = 82/201 (40%), Gaps = 32/201 (15%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RLDGK AI+TG+ GIGK A A GA V+++ + + A D+I+ + G+
Sbjct: 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQ------QLGGQ 61
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV----MMCPRQLTEDGYELQFATN 128
+ D++S + + A + + +L+NNAG + + + N
Sbjct: 62 AFACRCDITSEQELSALADFAISKLGKVDILVNNAGGGGPKPF---DMPMADFRRAYELN 118
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
+ + L+ P + K+ I+ ++S+A +Y SK
Sbjct: 119 VFSFFHLSQLVAPEMEKNGGGVILTITSMA-----AEN---------KNINMTSYASSKA 164
Query: 189 ANILFT----TELAKR-LQVN 204
A +L ++ ++VN
Sbjct: 165 AASHLVRNMAFDLGEKNIRVN 185
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 Length = 272 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 2e-29
Identities = 51/271 (18%), Positives = 91/271 (33%), Gaps = 78/271 (28%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
+ G+ ++TG+ GIG+ TA E AK +++++ + E A + +V
Sbjct: 29 VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCK------GLGAKV 82
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNHLG 131
+D S+ + + A+++ + +L+NNAGV+ + E F N L
Sbjct: 83 HTFVVDCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLA 142
Query: 132 HYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSAT---GAYGRSKL 188
H+ T LP + K+ I+ ++S A G+ + AY SK
Sbjct: 143 HFWTTKAFLPAMTKNNHGHIVTVASAA-----------------GHVSVPFLLAYCSSKF 185
Query: 189 ANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248
A + F L L
Sbjct: 186 AAVGFHKTLTDELA---------------------------------------------- 199
Query: 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDS 279
IT V T + P V+T ++ +
Sbjct: 200 ----ALQITGVKTTCLCPNFVNTGFIKNPST 226
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} Length = 276 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 3e-29
Identities = 59/206 (28%), Positives = 83/206 (40%), Gaps = 37/206 (17%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L G+ A+VTG + GIG+ A L + GARV + R E A + G+
Sbjct: 26 SLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLS-------AYGD 78
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFAT 127
DLSS R+ AQ + + + + +L+NNAG + G+E
Sbjct: 79 CQAIPADLSSEAGARRLAQALGELSARLDILVNNAGTSWGAALE---SYPVSGWEKVMQL 135
Query: 128 NHLGHYLFTLLLLPRIIKSA----PARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAY 183
N + LLP + +SA PAR+IN+ S+A G AY
Sbjct: 136 NVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISAMGEQ-------------AYAY 182
Query: 184 GRSKLANILFTTELAKRL-----QVN 204
G SK A + LAK L VN
Sbjct: 183 GPSKAALHQLSRMLAKELVGEHINVN 208
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* Length = 263 | Back alignment and structure |
|---|
Score = 111 bits (281), Expect = 3e-29
Identities = 37/196 (18%), Positives = 78/196 (39%), Gaps = 27/196 (13%)
Query: 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDA 70
D + GK A++TGS++GIG A AK GA +++ R +++ AA ++
Sbjct: 2 DMGISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFG----- 56
Query: 71 GEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR-----QLTEDGYELQF 125
V+ +D+++ + V + + + +L+NNAG + ++ ++ +
Sbjct: 57 VRVLEVAVDVATPEGVDAVVESVRSSFGGADILVNNAGT---GSNETIMEAADEKWQFYW 113
Query: 126 ATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGR 185
+ L+P + II+ +S+ Y
Sbjct: 114 ELLVMAAVRLARGLVPGMRARGGGAIIHNASICAVQPLWYE--------------PIYNV 159
Query: 186 SKLANILFTTELAKRL 201
+K A ++F+ LA +
Sbjct: 160 TKAALMMFSKTLATEV 175
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* Length = 260 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 4e-29
Identities = 40/195 (20%), Positives = 73/195 (37%), Gaps = 29/195 (14%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L+ K A+VT S GIG A LA+ GA V+++ R E + ++ +
Sbjct: 11 PLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQ------GEGLS 64
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV------MMCPRQLTEDGYELQFA 126
V + + + ++ + +L++NA V ++ TE+ ++
Sbjct: 65 VTGTVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNII---DATEEVWDKILH 121
Query: 127 TNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRS 186
N L T ++P + K ++ +SS+ + G Y S
Sbjct: 122 VNVKATVLMTKAVVPEMEKRGGGSVLIVSSVG-----AYH---------PFPNLGPYNVS 167
Query: 187 KLANILFTTELAKRL 201
K A + T LA L
Sbjct: 168 KTALLGLTKNLAVEL 182
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A Length = 266 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 5e-29
Identities = 45/202 (22%), Positives = 66/202 (32%), Gaps = 32/202 (15%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L KT +VTG GIG E A GA + R+ + + K +
Sbjct: 11 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQ------KKGFQ 64
Query: 73 VVIRQLDLSSLKSVRKCAQEILDN-ESAIHLLINNAGVMMCPRQL----TEDGYELQFAT 127
V D S K Q + + +LINN G + T + + +T
Sbjct: 65 VTGSVCDASLRPEREKLMQTVSSMFGGKLDILINNLG--AIRSKPTLDYTAEDFSFHIST 122
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
N Y + L P + S II +SS+A G + S Y +K
Sbjct: 123 NLESAYHLSQLAHPLLKASGCGNIIFMSSIA-----GVV---------SASVGSIYSATK 168
Query: 188 LANILFT----TELAKR-LQVN 204
A E A ++ N
Sbjct: 169 GALNQLARNLACEWASDGIRAN 190
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} Length = 247 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 7e-29
Identities = 49/205 (23%), Positives = 81/205 (39%), Gaps = 23/205 (11%)
Query: 1 MFLFSGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDI 60
MF +S L G+ +VTG+ GIG A A GA V++ R+ +D I
Sbjct: 2 MFDYS---AHPELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQI 58
Query: 61 RTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM--MCP-RQLT 117
+ + ++ L+ ++ + R+ A + + L++NA ++ P QL
Sbjct: 59 K---SAGQPQPLIIALNLENATAQQYRELAARVEHEFGRLDGLLHNASIIGPRTPLEQLP 115
Query: 118 EDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGY 177
++ + N ++ T LLP + +S A I SS G +
Sbjct: 116 DEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGRKGRANW----------- 164
Query: 178 SATGAYGRSKLANILFTTELAKRLQ 202
GAYG SK A LA L+
Sbjct: 165 ---GAYGVSKFATEGLMQTLADELE 186
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 278 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 1e-28
Identities = 44/199 (22%), Positives = 73/199 (36%), Gaps = 27/199 (13%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
TR K AI+TGS+ GIG+ TA A+ GA+V + R E+ E I
Sbjct: 2 TRFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQIL---AAGVSEQ 58
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQ------LTEDGYELQF 125
V D+++ + L + +L+NNAG + Q + + Y+
Sbjct: 59 NVNSVVADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATL 118
Query: 126 ATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGR 185
N T +P + + I+N+SS+A + Y
Sbjct: 119 NLNLRSVIALTKKAVPHLSSTK-GEIVNISSIA-------------SGLHATPDFPYYSI 164
Query: 186 SKLANILFT----TELAKR 200
+K A +T +L +
Sbjct: 165 AKAAIDQYTRNTAIDLIQH 183
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} Length = 281 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 1e-28
Identities = 39/200 (19%), Positives = 73/200 (36%), Gaps = 25/200 (12%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
+T +VTG +GIGK A L GA V++ R+ +K A ++ + G
Sbjct: 8 SFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELE---ALGANGGA 64
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM--MCP-RQLTEDGYELQFATNH 129
+ D+++ + + +H +++ AG + P Q+ + + N
Sbjct: 65 IRYEPTDITNEDETARAVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNV 124
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
G +++ + +SS+A S + GAYG +K A
Sbjct: 125 NGTMYVLKHAAREMVRGGGGSFVGISSIA-----ASN---------THRWFGAYGVTKSA 170
Query: 190 NILFT----TELAKR-LQVN 204
EL ++VN
Sbjct: 171 VDHLMQLAADELGASWVRVN 190
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* Length = 302 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 2e-28
Identities = 39/199 (19%), Positives = 80/199 (40%), Gaps = 27/199 (13%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
GK A +TG TG+GK L+ GA+ ++A R ++ + A+ I + + +V
Sbjct: 24 FQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISS-----QTGNKV 78
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-MMCP-RQLTEDGYELQFATNHLG 131
Q D+ V+ E++ +++INNA + P +L+ + ++ G
Sbjct: 79 HAIQCDVRDPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNG 138
Query: 132 HYLFTLLLLPRIIKS-APARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
TL + ++IK+ A ++++++ G G + +K
Sbjct: 139 TAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSGFV--------------VPSASAKAGV 184
Query: 191 ILFT----TELAKR-LQVN 204
+ E K ++ N
Sbjct: 185 EAMSKSLAAEWGKYGMRFN 203
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* Length = 254 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 2e-28
Identities = 54/300 (18%), Positives = 91/300 (30%), Gaps = 82/300 (27%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L K I + GIG T+ EL KR + + +E A+ LK +
Sbjct: 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAE-----LKAINPKVN 56
Query: 73 VVIRQLDLS-SLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLG 131
+ D++ + +K ++I D + +LIN AG++ + E A N G
Sbjct: 57 ITFHTYDVTVPVAESKKLLKKIFDQLKTVDILINGAGIL------DDHQIERTIAINFTG 110
Query: 132 HYLFTLLLLPRIIKSAPAR---IINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
T +L K I N+ S+ G Y SK
Sbjct: 111 LVNTTTAILDFWDKRKGGPGGIIANICSVT-----GFN---------AIHQVPVYSASKA 156
Query: 189 ANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248
A + FT LAK + T
Sbjct: 157 AVVSFTNSLAK-----------------LAPIT--------------------------- 172
Query: 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLY 308
+T +++PG+ T L F+S + + + + ++ Q Q +
Sbjct: 173 ------GVT-AY--SINPGITRTPLVHTFNSWLDVEPRVAELLLSHPTQTSEQCGQNFVK 223
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} Length = 273 | Back alignment and structure |
|---|
Score = 109 bits (276), Expect = 2e-28
Identities = 48/194 (24%), Positives = 76/194 (39%), Gaps = 31/194 (15%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RL+ K A++TG+ +GIG A GARV + R + + A +I G
Sbjct: 26 RLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI---------GGG 76
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-MMCP-RQLTEDGYELQFATNHL 130
V Q D ++L + + +++ I +L NAG M P ++TE+ Y+ F N
Sbjct: 77 AVGIQADSANLAELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVK 136
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
G LP + + + ++ S A + G A Y SK A
Sbjct: 137 GVLFTVQKALPLLARG--SSVVLTGSTAGS--------------TGTPAFSVYAASKAAL 180
Query: 191 ILFT----TELAKR 200
F +L R
Sbjct: 181 RSFARNWILDLKDR 194
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} Length = 253 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 4e-28
Identities = 51/197 (25%), Positives = 77/197 (39%), Gaps = 32/197 (16%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
R + K IVTGS GIG+ A LA+ GA V++A + E AE A I D G
Sbjct: 6 RFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIV------ADGGT 59
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR-----QLTEDGYELQFAT 127
+ +D+S +S + A L I L+NNA + + + + Y+ +
Sbjct: 60 AISVAVDVSDPESAKAMADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSV 119
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
N G T + ++ K I+N SS A + + YG +K
Sbjct: 120 NLDGALWCTRAVYKKMTKRGGGAIVNQSSTA-----------------AWLYSNYYGLAK 162
Query: 188 LANILFT----TELAKR 200
+ T EL R
Sbjct: 163 VGINGLTQQLSRELGGR 179
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} Length = 252 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 5e-28
Identities = 32/191 (16%), Positives = 58/191 (30%), Gaps = 23/191 (12%)
Query: 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDA 70
T V G+ IG A + A G V R+ EK +I
Sbjct: 2 SLTPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIE------AAG 55
Query: 71 GEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATN 128
G +V R LD + V D + + + I N G + + T+ + +
Sbjct: 56 GRIVARSLDARNEDEVTAFLNAA-DAHAPLEVTIFNVGANVNFPILETTDRVFRKVWEMA 114
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
++ ++ +I + A S+ +G S A+ +K
Sbjct: 115 CWAGFVSGRESARLMLAHGQGKIFFTGATA------SL--------RGGSGFAAFASAKF 160
Query: 189 ANILFTTELAK 199
+A+
Sbjct: 161 GLRAVAQSMAR 171
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} Length = 285 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 5e-28
Identities = 41/192 (21%), Positives = 75/192 (39%), Gaps = 16/192 (8%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG- 71
L GKT ++G + GIG A +A GA V + +S E I T+ K++++AG
Sbjct: 6 SLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGG 65
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM-MCP-RQLTEDGYELQFATNH 129
+ + D+ +V + ++ I + +NNA + + ++ ++L
Sbjct: 66 QALPIVGDIRDGDAVAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQV 125
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
G Y + +P + I+ LS I LE + Y +K
Sbjct: 126 RGTYAVSQSCIPHMKGRDNPHILTLSP-------------PIRLEPKWLRPTPYMMAKYG 172
Query: 190 NILFTTELAKRL 201
L +A+ L
Sbjct: 173 MTLCALGIAEEL 184
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} Length = 235 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 6e-28
Identities = 37/274 (13%), Positives = 75/274 (27%), Gaps = 79/274 (28%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
+ IVTG+ +G+G+ L +RG +V M R ++ + + V
Sbjct: 1 MSLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLL---------GNAV 51
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNHLG 131
+ DL+ + V ++ L+++ AG T + +N +
Sbjct: 52 IGIVADLAHHEDVDVAFAAAVEWGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVS 111
Query: 132 HYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANI 191
L + +I + N+ S A + G + Y SK
Sbjct: 112 TILVAQQTVR-LIGERGGVLANVLSSA-----AQV---------GKANESLYCASKWGMR 156
Query: 192 LFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHP 251
F L L+
Sbjct: 157 GFLESLRAELK------------------------------------------------- 167
Query: 252 PGANITNVNTYAVHPGVVDTELSRHFDSIIPGTA 285
+ + + ++P + +E + D + P
Sbjct: 168 -DSPLR-LV--NLYPSGIRSEFWDNTDHVDPSGF 197
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* Length = 259 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 7e-28
Identities = 40/201 (19%), Positives = 69/201 (34%), Gaps = 32/201 (15%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAK---RGARVIMACRSLEKAETAADDIRTSLKDVKD 69
L ++TG++ G G+ A +LA+ G+ ++++ RS +++ D+K
Sbjct: 3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLK- 61
Query: 70 AGEVVIRQLDLSSLKSVRKCAQEILD----NESAIHLLINNAGVMMCPR-----QLTEDG 120
VV+ DL + V++ + + LLINNA +
Sbjct: 62 ---VVLAAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAE 118
Query: 121 YELQFATNHLGHYLFTLLLLPRIIKS--APARIINLSSLAHTWGDGSMHFEDINLEKGYS 178
+A N T L S ++N+SSL + Y
Sbjct: 119 VNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCAL--------------QPYK 164
Query: 179 ATGAYGRSKLANILFTTELAK 199
G Y K A + LA
Sbjct: 165 GWGLYCAGKAARDMLYQVLAA 185
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} Length = 260 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 9e-28
Identities = 39/197 (19%), Positives = 69/197 (35%), Gaps = 30/197 (15%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L ++TG++ +G A L + G RVI++ R+ + ++R
Sbjct: 24 TLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRT---EHASVTELR--------QAG 72
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMM-CPRQLTEDGYELQFATNHLG 131
V D S + + S++ +++NA + D + F+ + L
Sbjct: 73 AVALYGDFSCETGIMAFIDLLKTQTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLA 132
Query: 132 HYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANI 191
YL L P + S A I+++S KG S AY +K
Sbjct: 133 PYLINLHCEPLLTASEVADIVHISD--------------DVTRKGSSKHIAYCATKAGLE 178
Query: 192 LFTT----ELAKRLQVN 204
T A ++VN
Sbjct: 179 SLTLSFAARFAPLVKVN 195
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 280 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 1e-27
Identities = 48/199 (24%), Positives = 71/199 (35%), Gaps = 27/199 (13%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
R KT I+TGS+ GIG+ TA A+ GA V + RS E+ E I K
Sbjct: 2 PRFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIIL---KSGVSEK 58
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV------MMCPRQLTEDGYELQF 125
+V D+++ + L I +L+NNAG D Y
Sbjct: 59 QVNSVVADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTL 118
Query: 126 ATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGR 185
N T + P ++ S I+N+SS+ + Y
Sbjct: 119 KLNLQAVIEMTKKVKPHLVASK-GEIVNVSSIVA-------------GPQAQPDFLYYAI 164
Query: 186 SKLANILFT----TELAKR 200
+K A +T +LAK
Sbjct: 165 AKAALDQYTRSTAIDLAKF 183
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} Length = 301 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 2e-27
Identities = 42/196 (21%), Positives = 76/196 (38%), Gaps = 27/196 (13%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
+ DG+ A+VTG +GIG TA E A+RGAR++++ E A + +R
Sbjct: 27 SGFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLR------GQGF 80
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNH 129
+ D+ L + + A E + ++ +NAG+++ Q+ D + +
Sbjct: 81 DAHGVVCDVRHLDEMVRLADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDL 140
Query: 130 LGHYLFTLLLLPRIIKS-APARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
G LPR+++ I +S A G + + G YG +K
Sbjct: 141 WGSIHAVEAFLPRLLEQGTGGHIAFTASFA-----GLV---------PNAGLGTYGVAKY 186
Query: 189 ANILFT----TELAKR 200
+ E+
Sbjct: 187 GVVGLAETLAREVKPN 202
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 297 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 2e-27
Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 25/197 (12%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
R GK+ I+TGS+ GIG+ A AK GA+V + R+ ++ E I K A
Sbjct: 22 ARFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQIL---KAGVPAE 78
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQL----TEDGYELQFAT 127
++ D++ L I +L+NNAG + + Y+ F
Sbjct: 79 KINAVVADVTEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKL 138
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
N T +IK+ I+N+SS+ + + +S Y +K
Sbjct: 139 NFQAVIEMTQKTKEHLIKTK-GEIVNVSSI-------------VAGPQAHSGYPYYACAK 184
Query: 188 LANILFT----TELAKR 200
A +T +L +
Sbjct: 185 AALDQYTRCTAIDLIQH 201
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} Length = 274 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 2e-27
Identities = 43/192 (22%), Positives = 73/192 (38%), Gaps = 15/192 (7%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG- 71
L GKT +TG++ GIG A A+ GA V +A +S I ++ V AG
Sbjct: 3 TLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGG 62
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM-MCP-RQLTEDGYELQFATNH 129
+ + + D+ VR +D I +L+NNA + + ++L N
Sbjct: 63 QGLALKCDIREEDQVRAAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNA 122
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
G ++ LP ++++ I+ L+ + A Y +K+
Sbjct: 123 RGSFVCAQACLPHLLQAPNPHILTLAPPPSLNP------------AWWGAHTGYTLAKMG 170
Query: 190 NILFTTELAKRL 201
L T LA
Sbjct: 171 MSLVTLGLAAEF 182
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} Length = 257 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 2e-27
Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 23/189 (12%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
+ K I+TG ++G+GK A AK GARV++ R+ EK E A +I + G++
Sbjct: 4 MKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIE------QFPGQI 57
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-MMCP-RQLTEDGYELQFATNHLG 131
+ Q+D+ + ++K ++I + I +LINNA +CP L+ +G+ G
Sbjct: 58 LTVQMDVRNTDDIQKMIEQIDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNG 117
Query: 132 HYLFTLLLLPRIIKS-APARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
+ + + I+ IIN+ + T+ +K
Sbjct: 118 TFYCSQAIGKYWIEKGIKGNIINMVA---TYA-----------WDAGPGVIHSAAAKAGV 163
Query: 191 ILFTTELAK 199
+ T LA
Sbjct: 164 LAMTKTLAV 172
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A Length = 255 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 3e-27
Identities = 50/194 (25%), Positives = 71/194 (36%), Gaps = 31/194 (15%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
GK AIV G G+G T L + GA V++ R+ ++
Sbjct: 5 NYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF---------GPR 55
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-MMCP-RQLTEDGYELQFATNHL 130
V + D++ L + AI LL NAGV + P Q++E Y+ QFA N
Sbjct: 56 VHALRSDIADLNEIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTK 115
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
G + L P I + I+ SS+A G+ Y SK A
Sbjct: 116 GAFFTVQRLTPLIREG--GSIVFTSSVADE--------------GGHPGMSVYSASKAAL 159
Query: 191 ILFT----TELAKR 200
+ F EL R
Sbjct: 160 VSFASVLAAELLPR 173
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} Length = 235 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 4e-27
Identities = 38/169 (22%), Positives = 79/169 (46%), Gaps = 18/169 (10%)
Query: 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVV 74
+ K A++TG++ GIG+ A LA+ G + + RS+++ E A ++ + EV
Sbjct: 1 EMKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQ-----EQGVEVF 55
Query: 75 IRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNHLGH 132
LD+S +SV + ++++L+ + +++ NAG+ R +L+E+ + N LG
Sbjct: 56 YHHLDVSKAESVEEFSKKVLERFGDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGV 115
Query: 133 YLFTLLLLPRIIKSAPARIINLSSLA-HTWGDGSMHFEDINLEKGYSAT 180
+ L + ++ ++ S ++ G GY +T
Sbjct: 116 WRTLKAFLDSLKRTGGLALVTTSDVSARLIPYGG----------GYVST 154
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} Length = 264 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 5e-27
Identities = 34/195 (17%), Positives = 71/195 (36%), Gaps = 28/195 (14%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L K +++G +G A A++GA +++A R++E+ E A +
Sbjct: 8 LLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVT------DTGRR 61
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQL---TEDGYELQFATNH 129
+ D++ V E + + ++INNA + + T +
Sbjct: 62 ALSVGTDITDDAQVAHLVDETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTV 121
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
G P + +S ++N++S + + + GAY +K A
Sbjct: 122 FGALRLIQGFTPALEESK-GAVVNVNS--------------MVVRHSQAKYGAYKMAKSA 166
Query: 190 NILFT----TELAKR 200
+ + TEL ++
Sbjct: 167 LLAMSQTLATELGEK 181
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} Length = 262 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 7e-27
Identities = 53/191 (27%), Positives = 75/191 (39%), Gaps = 23/191 (12%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
+ L G+ A+VTG++ GIG A +L GARV++ R +EK +I G
Sbjct: 25 SSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIV------AAGG 78
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQL---TEDGYELQFATN 128
E DLS ++ A +L +L+NNAGV L ++ A N
Sbjct: 79 EAESHACDLSHSDAIAAFATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVN 138
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
YL P +I + IIN+SSLA G + AY SK
Sbjct: 139 LKAPYLLLRAFAPAMIAAKRGHIINISSLA-----GKN---------PVADGAAYTASKW 184
Query: 189 ANILFTTELAK 199
T A+
Sbjct: 185 GLNGLMTSAAE 195
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} Length = 256 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 7e-27
Identities = 49/193 (25%), Positives = 77/193 (39%), Gaps = 27/193 (13%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L+ AIVTG+ GIG+ A AK GA V++ E AE A IR + G+
Sbjct: 9 HLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIR------QAGGK 62
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV----MMCPRQLTEDGYELQFATN 128
+ + +++ + + LD I +L+NNAG + +E F N
Sbjct: 63 AIGLECNVTDEQHREAVIKAALDQFGKITVLVNNAGGGGPKPF---DMPMSDFEWAFKLN 119
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
+ + L P + K+ I+N+SS+A G +YG SK
Sbjct: 120 LFSLFRLSQLAAPHMQKAGGGAILNISSMA-----GEN---------TNVRMASYGSSKA 165
Query: 189 ANILFTTELAKRL 201
A T +A +
Sbjct: 166 AVNHLTRNIAFDV 178
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} Length = 266 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 7e-27
Identities = 43/202 (21%), Positives = 76/202 (37%), Gaps = 31/202 (15%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RLDGK A++TG+ GIG A A GAR++++ R + + + A + +
Sbjct: 17 RLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQF-----GTD 71
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQL----TEDGYELQFATN 128
V +DL+ + + A+ + + +L+NNAG + Q ++ A N
Sbjct: 72 VHTVAIDLAEPDAPAELARRAAEAFGGLDVLVNNAG--ISHPQPVVDTDPQLFDATIAVN 129
Query: 129 HLGHYLFTLLLLPRIIK-SAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
L + ++ II ++S A AY SK
Sbjct: 130 LRAPALLASAVGKAMVAAGEGGAIITVASAA-----ALA---------PLPDHYAYCTSK 175
Query: 188 LANILFT----TELAKR-LQVN 204
++ T EL ++ N
Sbjct: 176 AGLVMATKVLARELGPHGIRAN 197
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} Length = 260 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 1e-26
Identities = 45/200 (22%), Positives = 85/200 (42%), Gaps = 26/200 (13%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RLD + AIVTG IG LA+ GARVI+A A A +D+R + +
Sbjct: 10 RLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLR------MEGHD 63
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCP---RQLTEDGYELQFATNH 129
V +D+++ +SV+ + + + E + +L+ AG+ + +T+ + Q N
Sbjct: 64 VSSVVMDVTNTESVQNAVRSVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINL 123
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
G + + +++ I+ + S++ G + +N + + AY SK
Sbjct: 124 NGMFRSCQAVGRIMLEQKQGVIVAIGSMS-----GLI----VNRPQQQA---AYNASKAG 171
Query: 190 NILFT----TELAKR-LQVN 204
+ E A ++ N
Sbjct: 172 VHQYIRSLAAEWAPHGIRAN 191
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* Length = 265 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 1e-26
Identities = 40/202 (19%), Positives = 66/202 (32%), Gaps = 31/202 (15%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L A+VTG ++GIG T L + GA V R E+ A +R
Sbjct: 5 DLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALR----QRFPGAR 60
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFAT 127
+ D+ VR A+ +L+NNAG + T++ + +
Sbjct: 61 LFASVCDVLDALQVRAFAEACERTLGCASILVNNAGQGRVSTFA---ETTDEAWSEELQL 117
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
LP++ A A I+ ++SL S A ++
Sbjct: 118 KFFSVIHPVRAFLPQLESRADAAIVCVNSLL-----ASQ---------PEPHMVATSAAR 163
Query: 188 LANILFT----TELAKR-LQVN 204
E A + ++VN
Sbjct: 164 AGVKNLVRSMAFEFAPKGVRVN 185
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... Length = 286 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 1e-26
Identities = 35/148 (23%), Positives = 54/148 (36%), Gaps = 8/148 (5%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L GK IVTG++ GIG+ A LAK GA V++ RS E + A
Sbjct: 25 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLE-----LGAAS 79
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNHL 130
+ + + + + +LI N N L
Sbjct: 80 AHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFL 139
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLA 158
+ + T+ LP + +S I+ +SSLA
Sbjct: 140 SYVVLTVAALPMLKQSN-GSIVVVSSLA 166
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* Length = 281 | Back alignment and structure |
|---|
Score = 104 bits (263), Expect = 1e-26
Identities = 45/203 (22%), Positives = 77/203 (37%), Gaps = 35/203 (17%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
+L G+ A++TG +G+G+ + GARV + +S E+ G
Sbjct: 2 KLTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAH---------GGN 52
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM-------MCPRQLTEDGYELQF 125
V D+ SL+ ++ A+ L I LI NAG+ P + ++ F
Sbjct: 53 AVGVVGDVRSLQDQKRAAERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIF 112
Query: 126 ATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGR 185
N G+ LP ++ S ++ S A + +G Y+A
Sbjct: 113 HVNVKGYIHAVKACLPALVSSR-GSVVFTISNAGFYPNGGGP--------LYTA------ 157
Query: 186 SKLANILFT----TELAKRLQVN 204
+K A + ELA ++VN
Sbjct: 158 TKHAVVGLVRQMAFELAPHVRVN 180
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* Length = 258 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 2e-26
Identities = 42/194 (21%), Positives = 75/194 (38%), Gaps = 29/194 (14%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMA-CRSLEKAETAADDIRTSLKDVKDAGE 72
K A+VTGS+ G+GK A LA+ G +++ RS + A A++I K +
Sbjct: 2 EQNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIE------KLGVK 55
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFAT 127
V++ + ++ +++ Q+I + + + +NNA +M +L E ++
Sbjct: 56 VLVVKANVGQPAKIKEMFQQIDETFGRLDVFVNNAASGVLRPVM---ELEETHWDWTMNI 112
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
N + K+ I+++SSL G SK
Sbjct: 113 NAKALLFCAQEAAKLMEKNGGGHIVSISSLG-----SIR---------YLENYTTVGVSK 158
Query: 188 LANILFTTELAKRL 201
A T LA L
Sbjct: 159 AALEALTRYLAVEL 172
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 2e-26
Identities = 49/201 (24%), Positives = 78/201 (38%), Gaps = 29/201 (14%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMA-CRSLEKAETAADDIRTSLKDVKDA 70
R +T +V G+ IG+ A A+ GA V++ + E A TA +I K
Sbjct: 4 QRFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIE------KLG 57
Query: 71 GEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQL---TEDGYELQFAT 127
+ + DL++ V D IH L++ AG ++ + + E +
Sbjct: 58 RSALAIKADLTNAAEVEAAISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDV 117
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
N +L LP++ K I+ SS A G G G AY SK
Sbjct: 118 NLTSLFLTAKTALPKMAKG--GAIVTFSSQAGRDGGGP----------GAL---AYATSK 162
Query: 188 LANILFTT----ELAKRLQVN 204
A + FT E+ +++VN
Sbjct: 163 GAVMTFTRGLAKEVGPKIRVN 183
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} Length = 254 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 2e-26
Identities = 43/195 (22%), Positives = 78/195 (40%), Gaps = 27/195 (13%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L K IVTG+ +GIG+ A + A + V+ ++ ++R E
Sbjct: 4 SLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELR------GMGKE 57
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR---QLTEDGYELQFATNH 129
V+ + D+S K V + + + S I +L NNAG+M +++++ +E A N
Sbjct: 58 VLGVKADVSKKKDVEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNL 117
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
+ + ++P ++K I+N +S+A G G A Y +K
Sbjct: 118 YSAFYSSRAVIPIMLKQGKGVIVNTASIA-----GIR---------GGFAGAPYTVAKHG 163
Query: 190 NILFT----TELAKR 200
I T +
Sbjct: 164 LIGLTRSIAAHYGDQ 178
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 Length = 267 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 2e-26
Identities = 48/197 (24%), Positives = 80/197 (40%), Gaps = 33/197 (16%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
++GK A+VTG+ GIG+ A L +GA+V + +LE + + + +
Sbjct: 4 MVNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAAL----HEQFEPQK 59
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGH 132
+ Q D++ + +R ++++D+ + +L+NNAGV E +E N +
Sbjct: 60 TLFIQCDVADQQQLRDTFRKVVDHFGRLDILVNNAGVN------NEKNWEKTLQINLVSV 113
Query: 133 YLFTLLLLPRIIKSAPAR---IINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
T L L + K IIN+SSLA G M + Y SK
Sbjct: 114 ISGTYLGLDYMSKQNGGEGGIIINMSSLA-----GLM---------PVAQQPVYCASKHG 159
Query: 190 NILFT------TELAKR 200
+ FT L
Sbjct: 160 IVGFTRSAALAANLMNS 176
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 250 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 2e-26
Identities = 54/204 (26%), Positives = 80/204 (39%), Gaps = 34/204 (16%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGA--RVIMACRSLEKAETAADDIRTSLKDVKDAGEVV 74
+ +VTG+N GIG +L K +I R +EKA LK +KD+ V
Sbjct: 4 GSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKAT--------ELKSIKDSR-VH 54
Query: 75 IRQLDLSSLKSVRKCAQEILD--NESAIHLLINNAGVMMC---PRQLTEDGYELQFATNH 129
+ L ++ KS+ ++ + + LLINNAGV++ + Q N
Sbjct: 55 VLPLTVTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNT 114
Query: 130 LGHYLFTLLLLPRIIKSA-----------PARIINLSSLAHTWGDGSMHFEDINLEKGYS 178
L T LLP + +A A +I +SS GS+ D
Sbjct: 115 TSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGL-----GSI--TDNTSGSAQF 167
Query: 179 ATGAYGRSKLANILFTTELAKRLQ 202
AY SK A +F LA L+
Sbjct: 168 PVLAYRMSKAAINMFGRTLAVDLK 191
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} Length = 261 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 2e-26
Identities = 46/196 (23%), Positives = 78/196 (39%), Gaps = 30/196 (15%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L+GK A++TG+ +G G+ A AK GA+V++ R AE A +I
Sbjct: 6 SLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI---------GDA 56
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR---QLTEDGYELQFATNH 129
+ D+S V + L + +L+NNAG+ P+ + + ++ N
Sbjct: 57 ALAVAADISKEADVDAAVEAALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNV 116
Query: 130 LGHYLFTLLLLPRIIK----SAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGR 185
G YL T L+P + I+N++S ++ Y+A
Sbjct: 117 RGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGRPRPNLA--------WYNA------ 162
Query: 186 SKLANILFTTELAKRL 201
+K + T LA L
Sbjct: 163 TKGWVVSVTKALAIEL 178
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 Length = 279 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 2e-26
Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 20/175 (11%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
R + A+VTG++ GIG A L ++G +V+ R++ E ++ K G
Sbjct: 29 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIE----ELAAECKSAGYPGT 84
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTE---DGYELQFATNH 129
++ + DLS+ + + I S + + INNAG+ P L G++ F N
Sbjct: 85 LIPYRCDLSNEEDILSMFSAIRSQHSGVDICINNAGLAR-PDTLLSGSTSGWKDMFNVNV 143
Query: 130 LGHYLFTLLLLPRIIKSAPAR--IINLSSLA--HTWGDGSMHFEDINLEKGYSAT 180
L + T + + IIN++S++ HF YSAT
Sbjct: 144 LALSICTREAYQSMKERNVDDGHIININSMSGHRVLPLSVTHF--------YSAT 190
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A Length = 251 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 3e-26
Identities = 60/287 (20%), Positives = 91/287 (31%), Gaps = 79/287 (27%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RLDGK AI+TG GIG A + + GA+V++ R + E AA + +
Sbjct: 3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSV-------GTPDQ 55
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHL 130
+ Q D S K + L+NNAG+ + + T + A N
Sbjct: 56 IQFFQHDSSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLD 115
Query: 131 GHYLFTLLLLPRIIKS-APARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
G + T L + R+ A IIN+SS+ G + G + GAY SK A
Sbjct: 116 GVFFGTRLGIQRMKNKGLGASIINMSSIE-----GFV---------GDPSLGAYNASKGA 161
Query: 190 NILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249
+ + A
Sbjct: 162 VRIMSKSAAL------------------------------------------DCALK--- 176
Query: 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQ----RVG 292
++ VN VHPG + T L + + +G
Sbjct: 177 ---DYDVR-VN--TVHPGYIKTPLVDDLPGAEEAMSQRTKTPMGHIG 217
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} Length = 262 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 3e-26
Identities = 33/198 (16%), Positives = 62/198 (31%), Gaps = 27/198 (13%)
Query: 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVI---MACRSLEKAETAADDIRTSLK 65
T L K ++ G +G TA A ++ + + A D++
Sbjct: 4 TKYHDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELE---- 59
Query: 66 DVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM-MCP-RQLTEDGYEL 123
+V + Q DLS+ + V K + + IN G + P + +E ++
Sbjct: 60 --DQGAKVALYQSDLSNEEEVAKLFDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDA 117
Query: 124 QFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAY 183
N+ Y F + + II +++ L Y
Sbjct: 118 MDTINNKVAYFFIKQAAKHMNPN--GHIITIAT--------------SLLAAYTGFYSTY 161
Query: 184 GRSKLANILFTTELAKRL 201
+K +T +K L
Sbjct: 162 AGNKAPVEHYTRAASKEL 179
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} Length = 260 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 5e-26
Identities = 33/153 (21%), Positives = 67/153 (43%), Gaps = 13/153 (8%)
Query: 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDA 70
D + GK A+VT ++G+G +A ELA+ GAR+++ R+ EK E AA I +
Sbjct: 2 DLGIQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIA----SLVSG 57
Query: 71 GEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR-----QLTEDGYELQF 125
+V I D+ + + ++ D +L+ + G PR +L + ++ +
Sbjct: 58 AQVDIVAGDIREPGDIDRLFEKARDLGG-ADILVYSTGG---PRPGRFMELGVEDWDESY 113
Query: 126 ATNHLGHYLFTLLLLPRIIKSAPARIINLSSLA 158
++++ R++ + S+
Sbjct: 114 RLLARSAVWVGRRAAEQMVEKGWGRMVYIGSVT 146
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 Length = 267 | Back alignment and structure |
|---|
Score = 102 bits (258), Expect = 7e-26
Identities = 49/201 (24%), Positives = 80/201 (39%), Gaps = 29/201 (14%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L G+ A+VTG + G+G A LA+ G V++A R+LE+A AA + E
Sbjct: 18 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY-----GVE 72
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQF----ATN 128
+ + D+S+ + V+K + + + + ++N AG + R E+ +F N
Sbjct: 73 TMAFRCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAG--INRRHPAEEFPLDEFRQVIEVN 130
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
G Y + +S IIN+ SL E AY SK
Sbjct: 131 LFGTYYVCREAFSLLRESDNPSIINIGSLT-------------VEEVTMPNISAYAASKG 177
Query: 189 ANILFT----TELAKR-LQVN 204
T E + ++VN
Sbjct: 178 GVASLTKALAKEWGRYGIRVN 198
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 Length = 274 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 9e-26
Identities = 49/200 (24%), Positives = 80/200 (40%), Gaps = 24/200 (12%)
Query: 5 SGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMA-CRSLEKAETAADDIRTS 63
SG A L GK A+ TG+ GIG+ A EL +RGA V++ S + AE +++
Sbjct: 10 SGPSDASKPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELK-- 67
Query: 64 LKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGY 121
K + V Q D+S V + + + + +++N+G+ + ++T++ +
Sbjct: 68 ----KLGAQGVAIQADISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELF 123
Query: 122 ELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATG 181
+ F N G + L + RII SS+A M G
Sbjct: 124 DKVFNLNTRGQFFVAQQGLKHCRRG--GRIILTSSIA-----AVM--------TGIPNHA 168
Query: 182 AYGRSKLANILFTTELAKRL 201
Y SK A F A
Sbjct: 169 LYAGSKAAVEGFCRAFAVDC 188
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} Length = 283 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 1e-25
Identities = 43/196 (21%), Positives = 77/196 (39%), Gaps = 25/196 (12%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
A++TG+ +GIG+ TA LA G V R+ + E AD+I G
Sbjct: 24 MNQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIV------GAGG 77
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR---QLTEDGYELQFATN 128
+ + + D+S +R ++++ + +++ NAG+ L ++ A N
Sbjct: 78 QAIALEADVSDELQMRNAVRDLVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVN 137
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
G +L L +P + + I+ +SS+ G+ F AY +K
Sbjct: 138 LRGTFLTLHLTVPYLKQRGGGAIVVVSSIN-----GTRTF-------TTPGATAYTATKA 185
Query: 189 ANILFT----TELAKR 200
A + EL K
Sbjct: 186 AQVAIVQQLALELGKH 201
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 Length = 262 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 1e-25
Identities = 49/200 (24%), Positives = 78/200 (39%), Gaps = 28/200 (14%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
+ +GK +VTG+ IG TA LA+ G + + + E E A +R + E
Sbjct: 4 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVR------EKGVE 57
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQL---TEDGYELQFATNH 129
D++S ++V ++ + I L NNAG + D + N
Sbjct: 58 ARSYVCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINV 117
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
G + + ++I RI+N +S+A G G AYG SK A
Sbjct: 118 TGAFHVLKAVSRQMITQNYGRIVNTASMA-----GVK---------GPPNMAAYGTSKGA 163
Query: 190 NILFT----TELAKR-LQVN 204
I T +LA ++VN
Sbjct: 164 IIALTETAALDLAPYNIRVN 183
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A Length = 259 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 1e-25
Identities = 52/201 (25%), Positives = 86/201 (42%), Gaps = 31/201 (15%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
RL+GK+A++TGS GIG+ A + GA V +A +E+A AA +I
Sbjct: 4 KRLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI---------GP 54
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV--MMCPRQLTEDGYELQFATNH 129
Q+D++ S+ +++ + +L+NNA + + ++T + YE FA N
Sbjct: 55 AAYAVQMDVTRQDSIDAAIAATVEHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINV 114
Query: 130 LGHYLFTLLLLPRIIKSAPA-RIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
G ++I +IIN++S A G G + Y +K
Sbjct: 115 AGTLFTLQAAARQMIAQGRGGKIINMASQA-----GRR---------GEALVAIYCATKA 160
Query: 189 ANILFT----TELAKR-LQVN 204
A I T +L K + VN
Sbjct: 161 AVISLTQSAGLDLIKHRINVN 181
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} Length = 260 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 2e-25
Identities = 40/199 (20%), Positives = 72/199 (36%), Gaps = 31/199 (15%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
++G+ +VTG++ GIG+ A +L K GA V + R L+ A + + G+
Sbjct: 2 PMNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQ------SLGGQ 55
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNES-AIHLLINNAGVMMCPRQLTEDG---------YE 122
V D S VR +++ + + +L+NNA + T + ++
Sbjct: 56 CVPVVCDSSQESEVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWD 115
Query: 123 LQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGA 182
GHY ++ ++ + I+ +SS Y
Sbjct: 116 DINNVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSL---------------QYMFNVP 160
Query: 183 YGRSKLANILFTTELAKRL 201
YG K A + A L
Sbjct: 161 YGVGKAACDKLAADCAHEL 179
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 Length = 244 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 2e-25
Identities = 42/202 (20%), Positives = 75/202 (37%), Gaps = 40/202 (19%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
G A+VTG+ GIG+ T L GA+V+ R+ + A +
Sbjct: 4 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC----------PG 53
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQ----LTEDGYELQFATN 128
+ +DL + K I + LL+NNA + Q +T++ ++ F+ N
Sbjct: 54 IEPVCVDLGDWDATEKALGGI----GPVDLLVNNAA--LVIMQPFLEVTKEAFDRSFSVN 107
Query: 129 HLGHYLFTLLLLPRIIK-SAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
+ + ++ +I P I+N+SS+ + Y +K
Sbjct: 108 LRSVFQVSQMVARDMINRGVPGSIVNVSSMVA--------------HVTFPNLITYSSTK 153
Query: 188 LANILFT----TELAKR-LQVN 204
A + T EL ++VN
Sbjct: 154 GAMTMLTKAMAMELGPHKIRVN 175
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* Length = 254 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 2e-25
Identities = 43/194 (22%), Positives = 76/194 (39%), Gaps = 29/194 (14%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L GKT I+TG G+G A + GARV++A E+ A ++
Sbjct: 2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL---------GDA 52
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV--MMCPRQLTEDGYELQFATNHL 130
+ LD++ + ++ + ++ L+NNAG+ M + + + N
Sbjct: 53 ARYQHLDVTIEEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLT 112
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
G ++ ++P + + I+N+SS A G M G + T +YG SK
Sbjct: 113 GVFIGMKTVIPAMKDAGGGSIVNISSAA-----GLM---------GLALTSSYGASKWGV 158
Query: 191 ILFT----TELAKR 200
+ EL
Sbjct: 159 RGLSKLAAVELGTD 172
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} Length = 262 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 2e-25
Identities = 50/197 (25%), Positives = 77/197 (39%), Gaps = 30/197 (15%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L G++ +VTG GIG+ A A+ GA V +A RS + D+ +G+
Sbjct: 7 DLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLG-----SGK 61
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFAT 127
V+ Q D+S A ++ I ++ NAGV + +T + FA
Sbjct: 62 VIGVQTDVSDRAQCDALAGRAVEEFGGIDVVCANAGVFPDAPLA---TMTPEQLNGIFAV 118
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
N G + L +I S R++ SS+ G + GY YG +K
Sbjct: 119 NVNGTFYAVQACLDALIASGSGRVVLTSSIT-----GPIT--------GYPGWSHYGATK 165
Query: 188 LANILFT----TELAKR 200
A + F ELA
Sbjct: 166 AAQLGFMRTAAIELAPH 182
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* Length = 276 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 2e-25
Identities = 39/216 (18%), Positives = 68/216 (31%), Gaps = 42/216 (19%)
Query: 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACR-SLEKAETAADDIRTSLKDV 67
T+ + A++TG IG A L ++G RV++ R S A+ ++ +
Sbjct: 4 TSHEASECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAA---- 59
Query: 68 KDAGEVVIRQLDLSSLKSVRKCAQEILDNESA----IHLLINNAGVM------------- 110
AG V+ + DLS S+ C ++I+D +L+NNA
Sbjct: 60 -RAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNG 118
Query: 111 MCPRQLTEDGYELQFATNHLGHYLFT-----LLLLPRIIKSAPARIINLSSLAHTWGDGS 165
+ + F +N + +S ++NL
Sbjct: 119 AADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCD--------- 169
Query: 166 MHFEDINLEKGYSATGAYGRSKLANILFTTELAKRL 201
+ Y +K A T A L
Sbjct: 170 -----AMTDLPLPGFCVYTMAKHALGGLTRAAALEL 200
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* Length = 261 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 2e-25
Identities = 46/200 (23%), Positives = 85/200 (42%), Gaps = 36/200 (18%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRS-LEKAETAADDIRTSLKDVKDAG 71
L+GK ++TGS+TG+GK A A A+V++ RS ++A + ++I+ K G
Sbjct: 4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIK------KVGG 57
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFA 126
E + + D++ V Q + + ++INNAG+ +++ +
Sbjct: 58 EAIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGLENPVSSH---EMSLSDWNKVID 114
Query: 127 TNHLGHYLFTLLLLPRIIKS-APARIINLSSLAHTWGD-GSMHFEDINLEKGYSATGAYG 184
TN G +L + + +++ +IN+SS+ +H Y+A
Sbjct: 115 TNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVH---------YAA----- 160
Query: 185 RSKLANILFT----TELAKR 200
SK L T E A +
Sbjct: 161 -SKGGMKLMTETLALEYAPK 179
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} Length = 254 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 3e-25
Identities = 39/190 (20%), Positives = 66/190 (34%), Gaps = 31/190 (16%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKRGARVIM--ACRSLEKAETAADDIRTSLKDVKDAGEV 73
GK +VTG + GIGK + L ++ RS + +
Sbjct: 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKY---------GDRF 52
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQL----TEDGYELQFATNH 129
D++ +++ + I L+ NAGV+ P Q + ++ + N
Sbjct: 53 FYVVGDITEDSVLKQLVNAAVKGHGKIDSLVANAGVLE-PVQNVNEIDVNAWKKLYDINF 111
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
+ LP + K+ ++ +SS A +S+ GAYG SK A
Sbjct: 112 FSIVSLVGIALPELKKTN-GNVVFVSSDACN--------------MYFSSWGAYGSSKAA 156
Query: 190 NILFTTELAK 199
F LA
Sbjct: 157 LNHFAMTLAN 166
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 Length = 246 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 3e-25
Identities = 48/189 (25%), Positives = 74/189 (39%), Gaps = 30/189 (15%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RLDGK I+T + GIG+ A A+ GA+VI + K +
Sbjct: 3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELE-----------KYPG 51
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMM--CPRQLTEDGYELQFATNHL 130
+ R LD++ K + + A E+ + +L N AG + E ++ N
Sbjct: 52 IQTRVLDVTKKKQIDQFANEV----ERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVR 107
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
YL LP+++ IIN+SS+A S+ KG Y +K A
Sbjct: 108 SMYLMIKAFLPKMLAQKSGNIINMSSVA-----SSV--------KGVVNRCVYSTTKAAV 154
Query: 191 ILFTTELAK 199
I T +A
Sbjct: 155 IGLTKSVAA 163
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} Length = 264 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 3e-25
Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 8/147 (5%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
+ K ++TG++ GIG+ A EL GA++++ R + E A +IR G
Sbjct: 2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIR------DAGGTA 55
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM-MCP-RQLTEDGYELQFATNHLG 131
+ + LD++ SV AQ +D I +L+NNAGVM + P + D +E N G
Sbjct: 56 LAQVLDVTDRHSVAAFAQAAVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKG 115
Query: 132 HYLFTLLLLPRIIKSAPARIINLSSLA 158
+LP + +IIN+ S+
Sbjct: 116 VLWGIGAVLPIMEAQRSGQIINIGSIG 142
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} Length = 280 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 4e-25
Identities = 44/196 (22%), Positives = 69/196 (35%), Gaps = 26/196 (13%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
+RL+GK AIVTG+++GIG+ A A+ GA+V++ R+ D+I G
Sbjct: 4 SRLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIA------GGGG 57
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR---QLTEDGYELQFATN 128
E D+ + + + NNAG + L+ +G+ TN
Sbjct: 58 EAAALAGDVGDEALHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTN 117
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
+L +P I + SS G++ Y SK
Sbjct: 118 LTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTA-------------GFAGVAPYAASKA 164
Query: 189 ANILFT----TELAKR 200
I EL R
Sbjct: 165 GLIGLVQALAVELGAR 180
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} Length = 263 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 4e-25
Identities = 50/198 (25%), Positives = 78/198 (39%), Gaps = 36/198 (18%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L G+ AIVTG + GIG A L K GA V +A + A+ + + G
Sbjct: 9 DLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLE-------NGGF 61
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFAT 127
V ++D++ SV Q+ +D LL NAGV + +T++ ++ F
Sbjct: 62 AV--EVDVTKRASVDAAMQKAIDALGGFDLLCANAGVSTMRPAV---DITDEEWDFNFDV 116
Query: 128 NHLGHYLFTLLLLPRIIKSAPA-RIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRS 186
N G +L + + S I+N +SLA + G Y S
Sbjct: 117 NARGVFLANQIACRHFLASNTKGVIVNTASLA-----AKV---------GAPLLAHYSAS 162
Query: 187 KLANILFT----TELAKR 200
K A +T E+A +
Sbjct: 163 KFAVFGWTQALAREMAPK 180
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} Length = 319 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 4e-25
Identities = 43/202 (21%), Positives = 76/202 (37%), Gaps = 32/202 (15%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
G+TA VTG G+G +L +G +V +A + + A +
Sbjct: 4 KDFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLE----AEGSGP 59
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNH 129
EV+ QLD++S + + A E+ + +L NNAGV + + + D ++ N
Sbjct: 60 EVMGVQLDVASREGFKMAADEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNL 119
Query: 130 LGHYLFTLLLLPRIIKSAPA------RIINLSSLAHTWGDGSMHFEDINLEKGYSAT--- 180
G +PR+++ A ++N +S+A + A
Sbjct: 120 HGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMA-----------------AFLAAGSP 162
Query: 181 GAYGRSKLANILFTTELAKRLQ 202
G Y +K A + L L
Sbjct: 163 GIYNTTKFAVRGLSESLHYSLL 184
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* Length = 244 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 4e-25
Identities = 41/202 (20%), Positives = 74/202 (36%), Gaps = 40/202 (19%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L G+ +VTG+ GIG+ T L GARV+ R+ ++ +
Sbjct: 4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC----------PG 53
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQ----LTEDGYELQFATN 128
+ +DL ++ + + + LL+NNA V Q +T++ ++ F N
Sbjct: 54 IEPVCVDLGDWEATERALGSV----GPVDLLVNNAAVA--LLQPFLEVTKEAFDRSFEVN 107
Query: 129 HLGHYLFTLLLLPRIIKS-APARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
+ ++ +I P I+N+SS + Y +K
Sbjct: 108 LRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNH--------------SVYCSTK 153
Query: 188 LANILFT----TELAKR-LQVN 204
A + T EL ++VN
Sbjct: 154 GALDMLTKVMALELGPHKIRVN 175
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} Length = 267 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 5e-25
Identities = 45/196 (22%), Positives = 75/196 (38%), Gaps = 30/196 (15%)
Query: 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDA 70
+L GKTA+VTGS GIGK A L GA V++ R E +IR D
Sbjct: 5 HMQLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPD---- 60
Query: 71 GEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR-----QLTEDGYELQF 125
+ DL + + Q++++ + +LINN G+ + ++ + F
Sbjct: 61 AILQPVVADLGTEQGC----QDVIEKYPKVDILINNLGI---FEPVEYFDIPDEDWFKLF 113
Query: 126 ATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGR 185
N + T L ++I+ R+I ++S A M Y
Sbjct: 114 EVNIMSGVRLTRSYLKKMIERKEGRVIFIASEAAIMPSQEM--------------AHYSA 159
Query: 186 SKLANILFTTELAKRL 201
+K + + LA+
Sbjct: 160 TKTMQLSLSRSLAELT 175
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} Length = 266 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 6e-25
Identities = 38/183 (20%), Positives = 68/183 (37%), Gaps = 24/183 (13%)
Query: 1 MFLFSGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDI 60
M +G K ++TG+++GIG+ A ++ G +++ R +E+
Sbjct: 1 MASMTGGQQMGRGSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVER-------- 52
Query: 61 RTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM---MCPRQLT 117
LK + + Q+D++ + ++NNAG+M Q
Sbjct: 53 ---LKALN-LPNTLCAQVDVTDKYTFDTAITRAEKIYGPADAIVNNAGMMLLGQIDTQEA 108
Query: 118 EDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGY 177
+ ++ F N LG +L + IIN+SS+A G F D Y
Sbjct: 109 NE-WQRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIA-----GKKTFPDHA---AY 159
Query: 178 SAT 180
T
Sbjct: 160 CGT 162
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} Length = 255 | Back alignment and structure |
|---|
Score = 99 bits (250), Expect = 7e-25
Identities = 53/201 (26%), Positives = 82/201 (40%), Gaps = 31/201 (15%)
Query: 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMA-CRSLEKAETAADDIRTSLKDVK 68
A++ L GK A+VTG++ GIG+ A LA GA V + E+AE +I+
Sbjct: 1 ANSMLKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQ------S 54
Query: 69 DAGEVVIRQLDLSSLKSVRKCAQEILD------NESAIHLLINNAGVMMC--PRQLTEDG 120
+ G +L SL V + + + +LINNAG+ + TE
Sbjct: 55 NGGSAFSIGANLESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQF 114
Query: 121 YELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSAT 180
++ + N + L R+ + +RIIN+SS A +
Sbjct: 115 FDRMVSVNAKAPFFIIQQALSRLRDN--SRIINISSAA-----TRI---------SLPDF 158
Query: 181 GAYGRSKLANILFTTELAKRL 201
AY +K A T LAK+L
Sbjct: 159 IAYSMTKGAINTMTFTLAKQL 179
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} Length = 277 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 7e-25
Identities = 44/191 (23%), Positives = 79/191 (41%), Gaps = 25/191 (13%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L+ + IVTG +GIG+ TA AK GA V++A + + A A++I +
Sbjct: 24 DLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEI---------GSK 74
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNHL 130
++D+SS K ++ + +L+NNAG + E+ ++ + N
Sbjct: 75 AFGVRVDVSSAKDAESMVEKTTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVK 134
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
G +L + ++P + ++ IIN +S + + AY SK A
Sbjct: 135 GIFLCSKYVIPVMRRNGGGSIINTTSYT-----ATS---------AIADRTAYVASKGAI 180
Query: 191 ILFTTELAKRL 201
T +A
Sbjct: 181 SSLTRAMAMDH 191
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* Length = 260 | Back alignment and structure |
|---|
Score = 99.9 bits (250), Expect = 8e-25
Identities = 40/194 (20%), Positives = 70/194 (36%), Gaps = 29/194 (14%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RL GK A+V+G G+G + GA+V+ E+ + A ++ A
Sbjct: 4 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL---------ADA 54
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNHL 130
LD++ + + +H+L+NNAG++ ++ N
Sbjct: 55 ARYVHLDVTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLT 114
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
G +L ++ + ++ IIN+SS+ G G A Y +K A
Sbjct: 115 GVFLGIRAVVKPMKEAGRGSIINISSIE-----GLA---------GTVACHGYTATKFAV 160
Query: 191 ILFT----TELAKR 200
T EL
Sbjct: 161 RGLTKSTALELGPS 174
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} Length = 255 | Back alignment and structure |
|---|
Score = 99.5 bits (249), Expect = 1e-24
Identities = 46/202 (22%), Positives = 78/202 (38%), Gaps = 32/202 (15%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L GKTA+VTGS G+G A LA GARVI+ + D + + +
Sbjct: 6 DLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLT------RKGYD 59
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQ----LTEDGYELQFATN 128
D++ ++ ++ + +LINNAG + R+ L + ++ TN
Sbjct: 60 AHGVAFDVTDELAIEAAFSKLDAEGIHVDILINNAG--IQYRKPMVELELENWQKVIDTN 117
Query: 129 HLGHYLFTLLLLPRIIK-SAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
+L + R+I ++ +IIN+ SL + Y +K
Sbjct: 118 LTSAFLVSRSAAKRMIARNSGGKIINIGSLTS--------------QAARPTVAPYTAAK 163
Query: 188 LANILFT----TELAKR-LQVN 204
+ T E A+ +Q N
Sbjct: 164 GGIKMLTCSMAAEWAQFNIQTN 185
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A Length = 270 | Back alignment and structure |
|---|
Score = 99.6 bits (249), Expect = 1e-24
Identities = 42/192 (21%), Positives = 76/192 (39%), Gaps = 24/192 (12%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMA-CRSLEKAETAADDIRTSLKDVKDAG 71
RLDGK A+VTGS GIG A L + GA+V++ S + AE +I+
Sbjct: 15 RLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIK------ALGS 68
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNH 129
+ + + D+ + + K + + + + + ++N+GV+ +TE+ ++ F+ N
Sbjct: 69 DAIAIKADIRQVPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNT 128
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
G + + + RI+ SS + Y SK A
Sbjct: 129 RGQFFVAREAYRHLTEG--GRIVLTSSNTSK-------------DFSVPKHSLYSGSKGA 173
Query: 190 NILFTTELAKRL 201
F +K
Sbjct: 174 VDSFVRIFSKDC 185
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 Length = 267 | Back alignment and structure |
|---|
Score = 99.5 bits (249), Expect = 1e-24
Identities = 38/196 (19%), Positives = 68/196 (34%), Gaps = 25/196 (12%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
TR + ++TG +G+G+ TA LA GA++ + S E E + + +
Sbjct: 9 TRFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVL----ETAPDA 64
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR---QLTEDGYELQFATN 128
EV+ D+S V + I NNAG+ T ++ + N
Sbjct: 65 EVLTTVADVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSIN 124
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
G +L +L + + ++N +S+ G G Y +K
Sbjct: 125 LRGVFLGLEKVLKIMREQGSGMVVNTASVG-----GIR---------GIGNQSGYAAAKH 170
Query: 189 ANILFT----TELAKR 200
+ T E +
Sbjct: 171 GVVGLTRNSAVEYGRY 186
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} Length = 272 | Back alignment and structure |
|---|
Score = 99.6 bits (249), Expect = 1e-24
Identities = 45/193 (23%), Positives = 72/193 (37%), Gaps = 28/193 (14%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
++ K AIVTG+ +G+G+ A LA G V +A R L+ + A +I
Sbjct: 24 SKTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEI---------GD 74
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCP---RQLTEDGYELQFATN 128
+ + D++ SVR ++ + +L NNAG LT ++ TN
Sbjct: 75 DALCVPTDVTDPDSVRALFTATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTN 134
Query: 129 HLGHYLFTLLLLPRIIKSAPA--RIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRS 186
G +L T + P RIIN S++ T + Y +
Sbjct: 135 LTGPFLCTQEAFRVMKAQEPRGGRIINNGSISAT--------------SPRPYSAPYTAT 180
Query: 187 KLANILFTTELAK 199
K A T +
Sbjct: 181 KHAITGLTKSTSL 193
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} Length = 267 | Back alignment and structure |
|---|
Score = 99.5 bits (249), Expect = 1e-24
Identities = 46/196 (23%), Positives = 73/196 (37%), Gaps = 25/196 (12%)
Query: 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMAC-RSLEKAETAADDIRTSLKDV 67
K AIVTG++ GIG A LA G V++ AE A I
Sbjct: 20 FQSMMETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIE------ 73
Query: 68 KDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQF 125
G+ + Q D+S +VR+ + + +L+NNAG+M + + ++
Sbjct: 74 AAGGKALTAQADVSDPAAVRRLFATAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVI 133
Query: 126 ATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGR 185
A N G + R+ RIIN+S+ + + + G Y
Sbjct: 134 AVNLKGTFNTLREAAQRLRVG--GRIINMST--------------SQVGLLHPSYGIYAA 177
Query: 186 SKLANILFTTELAKRL 201
+K T L+K L
Sbjct: 178 AKAGVEAMTHVLSKEL 193
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 Length = 270 | Back alignment and structure |
|---|
Score = 99.2 bits (248), Expect = 2e-24
Identities = 55/280 (19%), Positives = 88/280 (31%), Gaps = 81/280 (28%)
Query: 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVK 68
TR GK +VTG GIG GARV++ + ++
Sbjct: 2 ATGTRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL-------- 53
Query: 69 DAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR---QLTEDGYELQF 125
V D++ V+ E + + ++NNAG P+ + + G+
Sbjct: 54 --PGAVFILCDVTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLL 111
Query: 126 ATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGR 185
N LG Y T L LP + KS +IN+SSL G++ G + Y
Sbjct: 112 ELNLLGTYTLTKLALPYLRKSQ-GNVINISSLV-----GAI---------GQAQAVPYVA 156
Query: 186 SKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCK 245
+K A T LA ++ S +
Sbjct: 157 TKGAVTAMTKALA----LDESPY------------------------------------- 175
Query: 246 NVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTA 285
+ VN + PG + T L +++P
Sbjct: 176 ---------GVR-VN--CISPGNIWTPLWEELAALMPDPR 203
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} Length = 293 | Back alignment and structure |
|---|
Score = 99.2 bits (248), Expect = 2e-24
Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 13/149 (8%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L ++ +VTG GIG+ A A+ GA V +A RS + + ++ AG
Sbjct: 38 DLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELG-----AGN 92
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFAT 127
V+ +LD+S S A+ ++D A+ ++ NAG+ + +T +
Sbjct: 93 VIGVRLDVSDPGSCADAARTVVDAFGALDVVCANAGIFPEARLD---TMTPEQLSEVLDV 149
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSS 156
N G L + S R+I SS
Sbjct: 150 NVKGTVYTVQACLAPLTASGRGRVILTSS 178
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} Length = 272 | Back alignment and structure |
|---|
Score = 98.8 bits (247), Expect = 2e-24
Identities = 39/158 (24%), Positives = 66/158 (41%), Gaps = 11/158 (6%)
Query: 5 SGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSL 64
S T +TG+ +G G+ A A+ G +++ R E+ + A ++
Sbjct: 10 SSGLVPRGSHMSSTLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGEL---- 65
Query: 65 KDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTE---DGY 121
V+ LD+ ++ + + + + LINNAG+ + D +
Sbjct: 66 ---SAKTRVLPLTLDVRDRAAMSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDW 122
Query: 122 ELQFATNHLGHYLFTLLLLPRIIKS-APARIINLSSLA 158
+ TN G T LLLPR+I A A I+NL S+A
Sbjct: 123 DTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVA 160
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* Length = 249 | Back alignment and structure |
|---|
Score = 98.3 bits (246), Expect = 3e-24
Identities = 50/198 (25%), Positives = 80/198 (40%), Gaps = 36/198 (18%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RL K A++TG GIG+ A A GA + +A L A A IR
Sbjct: 4 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIA--DLVPAPEAEAAIR------NLGRR 55
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFAT 127
V+ + D+S V ++++ +L+NNAG+ +LT + ++ F
Sbjct: 56 VLTVKCDVSQPGDVEAFGKQVISTFGRCDILVNNAGIYPLIPFD---ELTFEQWKKTFEI 112
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGD-GSMHFEDINLEKGYSATGAYGRS 186
N +L +P + ++ RIINL+S + H Y + +
Sbjct: 113 NVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKIEAYTH---------YIS------T 157
Query: 187 KLANILFT----TELAKR 200
K ANI FT ++L K
Sbjct: 158 KAANIGFTRALASDLGKD 175
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* Length = 247 | Back alignment and structure |
|---|
Score = 98.0 bits (245), Expect = 3e-24
Identities = 46/172 (26%), Positives = 79/172 (45%), Gaps = 19/172 (11%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
+ L GK A++TG+++GIG+ TA LA GA V +A R +EK D++
Sbjct: 3 SALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELT------AAGA 56
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM-MCP-RQLTEDGYELQFATNH 129
+V + +LD++ + V ++ + +L+NNAG+M + P + TN
Sbjct: 57 KVHVLELDVADRQGVDAAVASTVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNL 116
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLA-HTWGDGSMHFEDINLEKGYSAT 180
LG T LP +++S ++ +SS+A + Y AT
Sbjct: 117 LGLMYMTRAALPHLLRSK-GTVVQMSSIAGRVNVRNA---------AVYQAT 158
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* Length = 283 | Back alignment and structure |
|---|
Score = 98.8 bits (247), Expect = 4e-24
Identities = 40/196 (20%), Positives = 76/196 (38%), Gaps = 24/196 (12%)
Query: 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMA-CRSLEKAETAADDIRTSLKDV 67
L+GK A+VTG+ GIG+ A EL +RG +VI+ S E AE I+
Sbjct: 22 PQSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIK------ 75
Query: 68 KDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQF 125
K+ + + ++ ++ + + +E + + ++ +N+GV+ +T + ++ F
Sbjct: 76 KNGSDAACVKANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVF 135
Query: 126 ATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGR 185
N G + + R+I + S+ Y
Sbjct: 136 TINTRGQFFVAREAYKHLEIG--GRLILMGSITGQAK-------------AVPKHAVYSG 180
Query: 186 SKLANILFTTELAKRL 201
SK A F +A +
Sbjct: 181 SKGAIETFARCMAIDM 196
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} Length = 234 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 4e-24
Identities = 39/167 (23%), Positives = 71/167 (42%), Gaps = 20/167 (11%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVI 75
++TG++ GIG+ TA L +G RV + R ++ + A ++ +
Sbjct: 5 KGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAEL----------EGALP 54
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM-MCP-RQLTEDGYELQFATNHLGHY 133
D+ + + + + L+NNAGV M P +LT + + L TN G +
Sbjct: 55 LPGDVREEGDWARAVAAMEEAFGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAF 114
Query: 134 LFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSAT 180
L +P +++ I+N+ SLA G F+ Y+A+
Sbjct: 115 LGIRHAVPALLRRGGGTIVNVGSLA-----GKNPFKGGA---AYNAS 153
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} Length = 281 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 4e-24
Identities = 43/196 (21%), Positives = 70/196 (35%), Gaps = 24/196 (12%)
Query: 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVK 68
+G+ A+VTG TG+G+ A L+ G V++ R + + AA +I
Sbjct: 26 QGKGSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGR----- 80
Query: 69 DAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR---QLTEDGYELQF 125
V D+ V + + + LL+NNAG + P ++T + +
Sbjct: 81 TGNIVRAVVCDVGDPDQVAALFAAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIV 140
Query: 126 ATNHLGHYLFTLLLLPRIIKSAPA--RIINLSSLAHTWGDGSMHFEDINLEKGYSATGAY 183
A N G +L T + P RIIN S++ + Y
Sbjct: 141 AANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSIS-----AQT---------PRPNSAPY 186
Query: 184 GRSKLANILFTTELAK 199
+K A T A
Sbjct: 187 TATKHAITGLTKSTAL 202
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} Length = 276 | Back alignment and structure |
|---|
Score = 98.0 bits (245), Expect = 6e-24
Identities = 50/203 (24%), Positives = 78/203 (38%), Gaps = 32/203 (15%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L GK A++TG++TGIGK A A+ GA+V +A R + + AD+I G+
Sbjct: 29 DLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIA------GVGGK 82
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQF----ATN 128
+ + D++ VR ++ I + + NAG+ Q D +F TN
Sbjct: 83 ALPIRCDVTQPDQVRGMLDQMTGELGGIDIAVCNAGI--VSVQAMLDMPLEEFQRIQDTN 140
Query: 129 HLGHYLFTLLLLPRIIKS-APARIINLSS-LAHTWGDGSMHFEDINLEKGYSATGAYGRS 186
G +L ++ II +S H Y S
Sbjct: 141 VTGVFLTAQAAARAMVDQGLGGTIITTASMSGHIINIPQQV-------------SHYCTS 187
Query: 187 KLANILFT----TELAKR-LQVN 204
K A + T ELA ++VN
Sbjct: 188 KAAVVHLTKAMAVELAPHQIRVN 210
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 Length = 256 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 6e-24
Identities = 46/194 (23%), Positives = 70/194 (36%), Gaps = 33/194 (17%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
K A+VTG+ GIGK A L K G V +A + A+ A +I + G V
Sbjct: 3 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEIN------QAGGHAVAV 56
Query: 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFATNHLG 131
++D+S V ++ +++NNAGV + +T + + + N G
Sbjct: 57 KVDVSDRDQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIE---SITPEIVDKVYNINVKG 113
Query: 132 HYLFTLLLLPRIIKSAPA-RIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
+ K +IIN S A G + G Y SK A
Sbjct: 114 VIWGIQAAVEAFKKEGHGGKIINACSQA-----GHV---------GNPELAVYSSSKFAV 159
Query: 191 ILFT----TELAKR 200
T +LA
Sbjct: 160 RGLTQTAARDLAPL 173
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} Length = 287 | Back alignment and structure |
|---|
Score = 98.1 bits (245), Expect = 6e-24
Identities = 43/156 (27%), Positives = 72/156 (46%), Gaps = 10/156 (6%)
Query: 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRG---ARVIMACRSLEKAETAADDIRTSLK 65
A RL KT ++TG++ GIGK TA E + ++I+A R LEK E I
Sbjct: 26 KAAERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFP 85
Query: 66 DVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTE---DGYE 122
+ +V + QLD++ + ++ + + I +L+NNAG + ++ + + +
Sbjct: 86 N----AKVHVAQLDITQAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQ 141
Query: 123 LQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLA 158
F TN T +LP I+NL S+A
Sbjct: 142 DVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIA 177
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} Length = 271 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 7e-24
Identities = 50/196 (25%), Positives = 77/196 (39%), Gaps = 31/196 (15%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L+ K AI+TG+ GIG T+ LA+ GARV++A AA +
Sbjct: 8 ELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASV---------GRG 58
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR----QLTEDGYELQFATN 128
V +DL++ SVR +D + ++ NNA Q+T D ++ F N
Sbjct: 59 AVHHVVDLTNEVSVRALIDFTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVN 118
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
G L +PR+I + I+N+SS Y + AY +K
Sbjct: 119 ARGTMLMCKYAIPRLISAGGGAIVNISSAT-----AHA---------AYDMSTAYACTKA 164
Query: 189 ANILFT----TELAKR 200
A T T+ +
Sbjct: 165 AIETLTRYVATQYGRH 180
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* Length = 258 | Back alignment and structure |
|---|
Score = 97.2 bits (243), Expect = 7e-24
Identities = 46/203 (22%), Positives = 77/203 (37%), Gaps = 34/203 (16%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARV-IMACRSLEKAETAADDIRTSLKDVKDA 70
L GK ++TGS+ GIG TA A+ GA+V + ++ + +R D
Sbjct: 3 PDLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMR------ADG 56
Query: 71 GEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQL----TEDGYELQFA 126
G+ DL++ ++ ++ E + I +LINNAG ++ R+ + Y+
Sbjct: 57 GDAAFFAADLATSEACQQLVDEFVAKFGGIDVLINNAGGLV-GRKPLPEIDDTFYDAVMD 115
Query: 127 TNHLGHYLFTLLLLPRIIKSAPA-----RIINLSSLAHTWGDGSMHFEDINLEKGYSATG 181
N + T LP + +A A +I+ S+A G G G
Sbjct: 116 ANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTG-------------GGPGAG 162
Query: 182 AYGRSKLANILFT----TELAKR 200
YG +K K
Sbjct: 163 LYGAAKAFLHNVHKNWVDFHTKD 185
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} Length = 279 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 8e-24
Identities = 41/201 (20%), Positives = 64/201 (31%), Gaps = 28/201 (13%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L GK A VTGS+ GIG A A+ GA V + S E A +
Sbjct: 31 SLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQK------TYGVH 84
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQF----ATN 128
+ ++S KSV + + + I + + NAGV + + + +
Sbjct: 85 SKAYKCNISDPKSVEETISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVD 144
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSS-LAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
G Y + + K+ +I SS + Y +K
Sbjct: 145 LNGVYYCSHNIGKIFKKNGKGSLIITSSISGKIVNIPQLQ-------------APYNTAK 191
Query: 188 LANILFT----TELAKRLQVN 204
A E A +VN
Sbjct: 192 AACTHLAKSLAIEWAPFARVN 212
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 Length = 244 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 9e-24
Identities = 45/273 (16%), Positives = 79/273 (28%), Gaps = 86/273 (31%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGAR-------VIMACRSLEKAETAADDIRTSLKDVKD 69
++TG+ GIG+ A E A+ ++++ R+ E + + R +
Sbjct: 3 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECR------AE 56
Query: 70 AGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCP----RQLTEDGYELQF 125
D+S + VR+ I++ I L+NNAGV LTE+ ++
Sbjct: 57 GALTDTITADISDMADVRRLTTHIVERYGHIDCLVNNAGVG--RFGALSDLTEEDFDYTM 114
Query: 126 ATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGR 185
TN G + T L + + I ++S+A K + + Y
Sbjct: 115 NTNLKGTFFLTQALFALMERQHSGHIFFITSVA---A-----------TKAFRHSSIYCM 160
Query: 186 SKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCK 245
SK +
Sbjct: 161 SKFGQRGLVETMR----------------LYARKC------------------------- 179
Query: 246 NVLFHPPGANITNVNTYAVHPGVVDTELSRHFD 278
N+ + V PG V T + D
Sbjct: 180 ---------NVR-IT--DVQPGAVYTPMWGKVD 200
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} Length = 269 | Back alignment and structure |
|---|
Score = 97.2 bits (243), Expect = 1e-23
Identities = 41/198 (20%), Positives = 71/198 (35%), Gaps = 36/198 (18%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
K AIVTG ++GIG + L + GA+V+ + +D + DV + E
Sbjct: 11 EFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDVNVSDHFKI---DVTNEEE 67
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNHL 130
V++ ++ I +L+NNAG+ + + N
Sbjct: 68 -------------VKEAVEKTTKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVN 114
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
G YL +P ++ IIN++S+ AY SK A
Sbjct: 115 GSYLMAKYTIPVMLAIGHGSIINIASVQ-----SYA---------ATKNAAAYVTSKHAL 160
Query: 191 ILFT----TELAKRLQVN 204
+ T + A +++ N
Sbjct: 161 LGLTRSVAIDYAPKIRCN 178
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} Length = 277 | Back alignment and structure |
|---|
Score = 97.2 bits (243), Expect = 1e-23
Identities = 55/195 (28%), Positives = 77/195 (39%), Gaps = 29/195 (14%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
L GK AIVTG+ GIG A LA G V+ A + A+ AA I
Sbjct: 25 PDLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI---------GC 75
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNH 129
++D+S + + + + L+ NAGV+ T + ++ A N
Sbjct: 76 GAAACRVDVSDEQQIIAMVDACVAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINL 135
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
G +L T PR+I+ I+NLSSLA G + TGAYG SK
Sbjct: 136 RGAWLCTKHAAPRMIERGGGAIVNLSSLA-----GQV---------AVGGTGAYGMSKAG 181
Query: 190 NILFT----TELAKR 200
I + EL
Sbjct: 182 IIQLSRITAAELRSS 196
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} Length = 270 | Back alignment and structure |
|---|
Score = 96.8 bits (242), Expect = 1e-23
Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 14/157 (8%)
Query: 5 SGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSL 64
G + D LD + AIVTG++ GIG+ A ELA+RGA VI + AE +
Sbjct: 17 QGPGSMDKTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFK--- 73
Query: 65 KDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTED 119
+ E L+++ +V + L A+++L+NNAG+ M ++ +D
Sbjct: 74 ---QAGLEGRGAVLNVNDATAVDALVESTLKEFGALNVLVNNAGITQDQLAM---RMKDD 127
Query: 120 GYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSS 156
++ TN + + +L ++K+ RI+N++S
Sbjct: 128 EWDAVIDTNLKAVFRLSRAVLRPMMKARGGRIVNITS 164
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} Length = 250 | Back alignment and structure |
|---|
Score = 96.4 bits (241), Expect = 1e-23
Identities = 44/194 (22%), Positives = 74/194 (38%), Gaps = 28/194 (14%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVI 75
+ AIVTG+++G G A RG RV S E E A + A +V+
Sbjct: 2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHA-----YADKVLR 56
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR-----QLTEDGYELQFATNHL 130
+ D++ V ++ AI +L+NNAG+ + ++ A N
Sbjct: 57 VRADVADEGDVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVR 116
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
G +L +LP ++ I+N++S+A + + AY SK A
Sbjct: 117 GIFLGCRAVLPHMLLQGAGVIVNIASVA-----SLV---------AFPGRSAYTTSKGAV 162
Query: 191 ILFT----TELAKR 200
+ T + A
Sbjct: 163 LQLTKSVAVDYAGS 176
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} Length = 264 | Back alignment and structure |
|---|
Score = 96.5 bits (241), Expect = 2e-23
Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 11/152 (7%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTS-LKDVKDAG 71
RL A+VTG+ +GIG+ + LA GA V A+ + K+ G
Sbjct: 4 RLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRG 63
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDN-ESAIHLLINNAGV-----MMCPRQLTEDGYELQF 125
Q D+S ++ R +++ ++++ AG+ ++ ++ED ++
Sbjct: 64 NHAAFQADVSEARAARCLLEQVQACFSRPPSVVVSCAGITQDEFLL---HMSEDDWDKVI 120
Query: 126 ATNHLGHYLFTLLLLPRIIKSAPA-RIINLSS 156
A N G +L T ++ + IIN+SS
Sbjct: 121 AVNLKGTFLVTQAAAQALVSNGCRGSIINISS 152
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} Length = 280 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 2e-23
Identities = 47/199 (23%), Positives = 73/199 (36%), Gaps = 30/199 (15%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIM-ACRSLEKAETAADDIRTSLKDVKDA 70
T+ AIVTG GIG A LA G + + E ++
Sbjct: 25 TQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELS------GLG 78
Query: 71 GEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR----QLTEDGYELQFA 126
V+ + DL+ L S + ++ I L+NNAG+ R L + ++
Sbjct: 79 ARVIFLRADLADLSSHQATVDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVG 138
Query: 127 TNHLGHYLFTLLLLPRIIKSAPA---RIINLSSLAHTWGDGSM-HFEDINLEKGYSATGA 182
N G FT +L ++ S IIN++S++ M E ++ Y
Sbjct: 139 VNLRGTVFFTQAVLKAMLASDARASRSIINITSVS-----AVMTSPERLD----YCM--- 186
Query: 183 YGRSKLANILFTTELAKRL 201
SK F+ LA RL
Sbjct: 187 ---SKAGLAAFSQGLALRL 202
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} Length = 271 | Back alignment and structure |
|---|
Score = 96.5 bits (241), Expect = 2e-23
Identities = 43/196 (21%), Positives = 72/196 (36%), Gaps = 24/196 (12%)
Query: 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMA-CRSLEKAETAADDIRTSLKDV 67
L GKTA VTG + GIG A LA GA V + + E+A+ +I
Sbjct: 24 MTSISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIE------ 77
Query: 68 KDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQF 125
+ G V + D +++ + +E ++ + +L+N+AG+ + T ++
Sbjct: 78 QAGGRAVAIRADNRDAEAIEQAIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVM 137
Query: 126 ATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGR 185
A N ++ + RII + S + Y
Sbjct: 138 AVNFRAPFVAIRSASRHLGDG--GRIITIGSNLAE-------------LVPWPGISLYSA 182
Query: 186 SKLANILFTTELAKRL 201
SK A T LA+ L
Sbjct: 183 SKAALAGLTKGLARDL 198
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* Length = 254 | Back alignment and structure |
|---|
Score = 96.0 bits (240), Expect = 2e-23
Identities = 45/201 (22%), Positives = 78/201 (38%), Gaps = 32/201 (15%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RLDG A VTG+ +GIG A GAR+I+ R + AA ++ A
Sbjct: 8 RLDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELG--------AAV 59
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQF----ATN 128
D++ +++ A E + + + +L+N+AG + + + + A N
Sbjct: 60 AARIVADVTDAEAMTAAAAEA-EAVAPVSILVNSAG--IARLHDALETDDATWRQVMAVN 116
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
G + + ++ I+NL S++ T + +Y SK
Sbjct: 117 VDGMFWASRAFGRAMVARGAGAIVNLGSMSGTIVNRPQF------------ASSYMASKG 164
Query: 189 ANILFT----TELAKR-LQVN 204
A T E A R ++VN
Sbjct: 165 AVHQLTRALAAEWAGRGVRVN 185
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* Length = 247 | Back alignment and structure |
|---|
Score = 95.6 bits (239), Expect = 3e-23
Identities = 44/150 (29%), Positives = 67/150 (44%), Gaps = 18/150 (12%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RL GKTA+VTG+ GIGK A LA GA VI++ + E A+ AA I +
Sbjct: 3 RLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI---------GKK 53
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFAT 127
D+S SV+ EI I +L+NNA + + D +
Sbjct: 54 ARAIAADISDPGSVKALFAEIQALTGGIDILVNNASIVPFVAWD---DVDLDHWRKIIDV 110
Query: 128 NHLGHYLFTLLLLPRIIKSAPA-RIINLSS 156
N G ++ T ++ + A R+I+++S
Sbjct: 111 NLTGTFIVTRAGTDQMRAAGKAGRVISIAS 140
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 Length = 267 | Back alignment and structure |
|---|
Score = 95.9 bits (239), Expect = 3e-23
Identities = 47/206 (22%), Positives = 78/206 (37%), Gaps = 39/206 (18%)
Query: 17 KTAIVTGSNTGIGKCTANELAK---RGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
+ ++TG N G+G L + CR+ E+A+ D L K+ +
Sbjct: 22 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELED-----LA--KNHSNI 74
Query: 74 VIRQLDLSSLKSVRKCAQEI--LDNESAIHLLINNAGVM---MCPRQLTEDGYELQFATN 128
I ++DL + + K +I + + +++L NNAG+ + TN
Sbjct: 75 HILEIDLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTN 134
Query: 129 HLGHYLFTLLLLPRIIKSA-----------PARIINLSSLAHTWGDGSMHFEDINLEKGY 177
+ + LP + K+A A IIN+SS+ GS+ + Y
Sbjct: 135 TVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSIL-----GSI--QGNTDGGMY 187
Query: 178 SATGAYGRSKLA-NILFTTELAKRLQ 202
AY SK A N T L+ L
Sbjct: 188 ----AYRTSKSALNAA-TKSLSVDLY 208
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 Length = 285 | Back alignment and structure |
|---|
Score = 96.1 bits (240), Expect = 3e-23
Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 14/148 (9%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
+ K A+VTG+ GIG+ A LAK + VI R+ + ++ D+I+ E
Sbjct: 42 GENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIK------SFGYES 95
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFATN 128
D+S + + + +IL + +L+NNAG+ + ++ D +E TN
Sbjct: 96 SGYAGDVSKKEEISEVINKILTEHKNVDILVNNAGITRDNLFL---RMKNDEWEDVLRTN 152
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSS 156
+ T + R+I + RIIN+SS
Sbjct: 153 LNSLFYITQPISKRMINNRYGRIINISS 180
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 Length = 256 | Back alignment and structure |
|---|
Score = 95.2 bits (238), Expect = 4e-23
Identities = 40/191 (20%), Positives = 61/191 (31%), Gaps = 28/191 (14%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
GK +VTG GIG+ A A+ GA V + E E A A
Sbjct: 3 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAE------------AIG 50
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMM--CPRQLTEDGYELQFATNHL 130
Q+DL + + +E + +L+NNA + + + N
Sbjct: 51 GAFFQVDLEDERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLT 110
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
+ L + K I+N++S+ G AY SK
Sbjct: 111 APMHLSALAAREMRKVGGGAIVNVASVQ-----GLF---------AEQENAAYNASKGGL 156
Query: 191 ILFTTELAKRL 201
+ T LA L
Sbjct: 157 VNLTRSLALDL 167
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 Length = 253 | Back alignment and structure |
|---|
Score = 94.9 bits (237), Expect = 5e-23
Identities = 43/267 (16%), Positives = 79/267 (29%), Gaps = 77/267 (28%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RL GK A+VTG +G+G L GA+V + + + A ++
Sbjct: 3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL---------GER 53
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHL 130
+ + D+SS + +++L+NNAG+++ + + N
Sbjct: 54 SMFVRHDVSSEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTE 113
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
++ + +K IIN++S++ + Y SK A
Sbjct: 114 SVFIGCQQGIA-AMKETGGSIINMASVS-----SWL---------PIEQYAGYSASKAAV 158
Query: 191 ILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250
T A K
Sbjct: 159 SALTRAAAL------------------------------------------SCRKQ---- 172
Query: 251 PPGANITNVNTYAVHPGVVDTELSRHF 277
G I VN ++HP + T + +
Sbjct: 173 --GYAI-RVN--SIHPDGIYTPMMQAS 194
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} Length = 250 | Back alignment and structure |
|---|
Score = 94.9 bits (237), Expect = 5e-23
Identities = 40/197 (20%), Positives = 66/197 (33%), Gaps = 42/197 (21%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
GK VTG+ GIG TA + GA+V ++ +
Sbjct: 4 DFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQE----------------QYP 47
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFAT 127
+D++ V + Q +L + L+N AG+ QL+++ ++ FA
Sbjct: 48 FATEVMDVADAAQVAQVCQRLLAETERLDALVNAAGILRMGATD---QLSKEDWQQTFAV 104
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
N G + + + + I+ ++S A M AYG SK
Sbjct: 105 NVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHTPRIGM--------------SAYGASK 150
Query: 188 LANILFT----TELAKR 200
A ELA
Sbjct: 151 AALKSLALSVGLELAGS 167
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} Length = 260 | Back alignment and structure |
|---|
Score = 94.9 bits (237), Expect = 5e-23
Identities = 35/202 (17%), Positives = 73/202 (36%), Gaps = 40/202 (19%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
R K ++TG++ GIG R RV+ RS++ + +
Sbjct: 25 RNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSA---------------DPD 69
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFAT 127
+ D+S ++ + +E ++ I L+NNAGV + ++T++ Y+
Sbjct: 70 IHTVAGDISKPETADRIVREGIERFGRIDSLVNNAGVFLAKPFV---EMTQEDYDHNLGV 126
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
N G + T ++K I+++++ M + +K
Sbjct: 127 NVAGFFHITQRAAAEMLKQGSGHIVSITTSLVDQPMVGM------------PSALASLTK 174
Query: 188 LANILFT----TELAKR-LQVN 204
T E ++ ++VN
Sbjct: 175 GGLNAVTRSLAMEFSRSGVRVN 196
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} Length = 258 | Back alignment and structure |
|---|
Score = 94.9 bits (237), Expect = 6e-23
Identities = 43/202 (21%), Positives = 76/202 (37%), Gaps = 36/202 (17%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMA--CRSLEKAETAADDIRTSLKDVKDAGEV 73
K A+VTG GIG+ + +LA G + +A + E+A I +
Sbjct: 2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIE------AADQKA 55
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFATN 128
V LD++ + E + +L+NNAG+ ++ ++TE+ + ++ N
Sbjct: 56 VFVGLDVTDKANFDSAIDEAAEKLGGFDVLVNNAGIAQIKPLL---EVTEEDLKQIYSVN 112
Query: 129 HLGHYLFTLLLLPRIIKSAPA-RIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
+ + + +IIN +S+A G+ AY +K
Sbjct: 113 VFSVFFGIQAASRKFDELGVKGKIINAASIA-----AIQ---------GFPILSAYSTTK 158
Query: 188 LANILFT----TELAKR-LQVN 204
A T ELA + VN
Sbjct: 159 FAVRGLTQAAAQELAPKGHTVN 180
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 Length = 263 | Back alignment and structure |
|---|
Score = 94.9 bits (237), Expect = 6e-23
Identities = 43/197 (21%), Positives = 71/197 (36%), Gaps = 38/197 (19%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RL GKT +VTG+ +GIG+ + A+ GA ++ R A + E
Sbjct: 3 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL---------EAE 53
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFAT 127
+ D+S K+V E L+ +H + + AGV L + +E
Sbjct: 54 AIAVVADVSDPKAVEAVFAEALEEFGRLHGVAHFAGVAHSALSW---NLPLEAWEKVLRV 110
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
N G +L + + ++ S+A G H Y+A K
Sbjct: 111 NLTGSFLVARKAGEVLEEG--GSLVLTGSVAGLGAFGLAH---------YAA------GK 153
Query: 188 LANILFT----TELAKR 200
L + ELA++
Sbjct: 154 LGVVGLARTLALELARK 170
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 Length = 265 | Back alignment and structure |
|---|
Score = 94.9 bits (237), Expect = 6e-23
Identities = 49/205 (23%), Positives = 72/205 (35%), Gaps = 30/205 (14%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
KT IVTG N GIG +A GA V + RS A + + +
Sbjct: 11 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFG-----VK 65
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFAT 127
Q D+S+ V K Q+I + I LI NAGV +LT + + +
Sbjct: 66 TKAYQCDVSNTDIVTKTIQQIDADLGPISGLIANAGVSVVKPAT---ELTHEDFAFVYDV 122
Query: 128 NHLGHYLFTLLLLPR-IIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATG--AYG 184
N G + + + K I+ SS++ + IN + Y
Sbjct: 123 NVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMS-----SQI----INQSSLNGSLTQVFYN 173
Query: 185 RSKLANILFT----TELAKR-LQVN 204
SK A E A ++VN
Sbjct: 174 SSKAACSNLVKGLAAEWASAGIRVN 198
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A Length = 264 | Back alignment and structure |
|---|
Score = 94.5 bits (236), Expect = 7e-23
Identities = 46/199 (23%), Positives = 76/199 (38%), Gaps = 37/199 (18%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
+ L K IVTG++ GIG+ A G++VI + E D I
Sbjct: 4 SDLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIH-DPGEAKYDHIEC--------- 53
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNH 129
D+++ V+ I +I +L+NNAG+ + ++ + N
Sbjct: 54 -------DVTNPDQVKASIDHIFKEYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNL 106
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
G+Y + +P +I+S I+N+SS+ S+ AY SK A
Sbjct: 107 FGYYYASKFAIPYMIRSRDPSIVNISSVQ-----ASI---------ITKNASAYVTSKHA 152
Query: 190 NILFT----TELAKRLQVN 204
I T + A L+ N
Sbjct: 153 VIGLTKSIALDYAPLLRCN 171
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} Length = 230 | Back alignment and structure |
|---|
Score = 93.8 bits (234), Expect = 9e-23
Identities = 27/169 (15%), Positives = 55/169 (32%), Gaps = 23/169 (13%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
++TG+++G+G A G + RS K T + + V R
Sbjct: 2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCLS---------NNVGYR 52
Query: 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNHLGHYL 134
DL+S + V + +++ +S ++++AG + + + N
Sbjct: 53 ARDLASHQEVEQLFEQL---DSIPSTVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAIN 109
Query: 135 FTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAY 183
L+ R P ++ + S A + Y A
Sbjct: 110 VLRELVKRYKDQ-PVNVVMIMSTA-----AQQPKAQES---TYCAVKWA 149
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} Length = 294 | Back alignment and structure |
|---|
Score = 94.9 bits (237), Expect = 9e-23
Identities = 51/193 (26%), Positives = 82/193 (42%), Gaps = 25/193 (12%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG- 71
RL + A+VTG ++GIG+ A A+ GA V + E E A ++ +++ G
Sbjct: 46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAE--EEDAQQVK---ALIEECGR 100
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-MMCPR--QLTEDGYELQFATN 128
+ V+ DLS R + + + +L AG P LT + ++ FA N
Sbjct: 101 KAVLLPGDLSDESFARSLVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVN 160
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
+ T +P + K A II SS+ S H D Y+AT K
Sbjct: 161 VFALFWITQEAIPLLPKG--ASIITTSSIQAY--QPSPHLLD------YAAT------KA 204
Query: 189 ANILFTTELAKRL 201
A + ++ LAK++
Sbjct: 205 AILNYSRGLAKQV 217
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* Length = 277 | Back alignment and structure |
|---|
Score = 93.8 bits (234), Expect = 2e-22
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 16/152 (10%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
D + A+VTG+ +GIG A L K G RV + R E T ++R +
Sbjct: 18 ATQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELR------EAGV 71
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFA 126
E R D+ S+ + +++ + +L+NNAG +L ++ +
Sbjct: 72 EADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATA---ELADELWLDVVE 128
Query: 127 TNHLGHYLFTLLLLPRI--IKSAPARIINLSS 156
TN G + T +L ++ RI+N++S
Sbjct: 129 TNLTGVFRVTKQVLKAGGMLERGTGRIVNIAS 160
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB: 3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E Length = 248 | Back alignment and structure |
|---|
Score = 92.9 bits (232), Expect = 2e-22
Identities = 42/148 (28%), Positives = 73/148 (49%), Gaps = 17/148 (11%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L+GK A+VTG++ GIGK A LA+RGA+VI S A+ +D +
Sbjct: 7 LEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYL---------GDNG 57
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFATN 128
L++++ +S+ + I D + +L+NNAG+ +M ++ E+ + TN
Sbjct: 58 KGMALNVTNPESIEAVLKAITDEFGGVDILVNNAGITRDNLLM---RMKEEEWSDIMETN 114
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSS 156
+ + +L ++K RIIN+ S
Sbjct: 115 LTSIFRLSKAVLRGMMKKRQGRIINVGS 142
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} Length = 272 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 2e-22
Identities = 45/197 (22%), Positives = 78/197 (39%), Gaps = 26/197 (13%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMA-CRSLEKAETAADDIRTSLKDVKDA 70
+ D +VTG + GIG A++G RV + + E A+ I S
Sbjct: 22 SMSDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITES------G 75
Query: 71 GEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR---QLTEDGYELQFAT 127
GE V D+ + + + + L+NNAG++ P+ +++ + E
Sbjct: 76 GEAVAIPGDVGNAADIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRV 135
Query: 128 NHLGHYLFTLLLLPRIIKSAPA---RIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYG 184
N G L + R+ + I+N+SS+A G + ++ Y+A
Sbjct: 136 NVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGSA---TQYVD----YAA----- 183
Query: 185 RSKLANILFTTELAKRL 201
SK A FT LA+ +
Sbjct: 184 -SKAAIDTFTIGLAREV 199
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} Length = 273 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 3e-22
Identities = 47/201 (23%), Positives = 83/201 (41%), Gaps = 33/201 (16%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L G+TA+VTG+ +GIG+ A+ A+ GA V+ R+ + + AD+I G
Sbjct: 28 SLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT-DGVKEVADEIA------DGGGS 80
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQ----LTEDGYELQFATN 128
DL+ L+ A+E+ + +L+NNAG + R ++ + N
Sbjct: 81 AEAVVADLADLEGAANVAEEL-AATRRVDVLVNNAG--IIARAPAEEVSLGRWREVLTVN 137
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
++ + ++ RI+ ++S+ +G AY SK
Sbjct: 138 LDAAWVLSRSFGTAMLAHGSGRIVTIASMLS--------------FQGGRNVAAYAASKH 183
Query: 189 ANILFT----TELAKR-LQVN 204
A + T +E A R + VN
Sbjct: 184 AVVGLTRALASEWAGRGVGVN 204
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} Length = 266 | Back alignment and structure |
|---|
Score = 93.0 bits (232), Expect = 3e-22
Identities = 37/200 (18%), Positives = 69/200 (34%), Gaps = 35/200 (17%)
Query: 13 RLDGKTAIVTG-SNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
L GK +VT + TGIG TA GA V+++ + D + G
Sbjct: 19 LLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLAD-----LGLG 73
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFA 126
V D++S ++V + ++ + +L+NNAG+ ++ +T++ ++
Sbjct: 74 RVEAVVCDVTSTEAVDALITQTVEKAGRLDVLVNNAGLGGQTPVV---DMTDEEWDRVLN 130
Query: 127 TNHLGHYLFTLLLLPRIIKSAPA-RIINLSSLAHTWGD-GSMHFEDINLEKGYSATGAYG 184
T L I+N +S+ H Y+A
Sbjct: 131 VTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWRAQHSQSH---------YAA----- 176
Query: 185 RSKLANILFT----TELAKR 200
+K + T E +
Sbjct: 177 -AKAGVMALTRCSAIEAVEF 195
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* Length = 278 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 3e-22
Identities = 36/190 (18%), Positives = 69/190 (36%), Gaps = 24/190 (12%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RL K AI+TG GIG+ TA + GA+V++A + + + ++I
Sbjct: 13 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNI-------GSPDV 65
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQ----LTEDGYELQFATN 128
+ D++ + VR + + ++ N GV+ + ++ N
Sbjct: 66 ISFVHCDVTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDIN 125
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
G +L +I + I+ +S++ G + Y +K
Sbjct: 126 VYGAFLVAKHAARVMIPAKKGSIVFTASISSFTA-------------GEGVSHVYTATKH 172
Query: 189 ANILFTTELA 198
A + TT L
Sbjct: 173 AVLGLTTSLC 182
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* Length = 248 | Back alignment and structure |
|---|
Score = 92.6 bits (231), Expect = 3e-22
Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 12/143 (8%)
Query: 19 AIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQL 78
+VTG+ G G+C ++G +VI R E+ + D++ + I QL
Sbjct: 3 VLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL---------GDNLYIAQL 53
Query: 79 DLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTE---DGYELQFATNHLGHYLF 135
D+ + ++ + + I +L+NNAG+ + + + +E TN+ G
Sbjct: 54 DVRNRAAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYM 113
Query: 136 TLLLLPRIIKSAPARIINLSSLA 158
T +LP +++ IIN+ S A
Sbjct: 114 TRAVLPGMVERNHGHIINIGSTA 136
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} Length = 287 | Back alignment and structure |
|---|
Score = 93.1 bits (232), Expect = 4e-22
Identities = 40/198 (20%), Positives = 75/198 (37%), Gaps = 15/198 (7%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMA--CRSLEKAETA---ADDIRTSLKDV 67
R+ K +VTG G G+ A +LA+ GA +I+ C +E E + D+ + +V
Sbjct: 7 RVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEV 66
Query: 68 KDAG-EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFA 126
+ G + ++D+ +V + + + +++ NAG+ L + F
Sbjct: 67 EKTGRKAYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFD 126
Query: 127 TNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRS 186
+ +G LP + A II S+A G + Y +
Sbjct: 127 VDFVGVINTVHAALPYLTSG--ASIITTGSVAGLIAAAQPPGAGGPQGPGGA---GYSYA 181
Query: 187 KLANILFT----TELAKR 200
K +T +LA +
Sbjct: 182 KQLVDSYTLQLAAQLAPQ 199
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} Length = 247 | Back alignment and structure |
|---|
Score = 92.2 bits (230), Expect = 5e-22
Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 14/148 (9%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L+ K A+VTG++ GIG A+ LA +GA V+ S AE + ++ + +
Sbjct: 3 LNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMK------EKGFKA 56
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFATN 128
L++S ++S++ EI AI +L+NNAG+ MM +++ED ++ TN
Sbjct: 57 RGLVLNISDIESIQNFFAEIKAENLAIDILVNNAGITRDNLMM---RMSEDEWQSVINTN 113
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSS 156
+ + + ++K RII++ S
Sbjct: 114 LSSIFRMSKECVRGMMKKRWGRIISIGS 141
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} Length = 247 | Back alignment and structure |
|---|
Score = 92.2 bits (230), Expect = 5e-22
Identities = 41/150 (27%), Positives = 75/150 (50%), Gaps = 15/150 (10%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIM-ACRSLEKAETAADDIRTSLKDVKDAG 71
+L GKTAIVTGS+ G+GK A +L GA +++ + + A++ +
Sbjct: 2 QLKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFK------AAGI 55
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFA 126
VV+ + D+ + + V + +D I +L+NNAG+ M+ +++E ++
Sbjct: 56 NVVVAKGDVKNPEDVENMVKTAMDAFGRIDILVNNAGITRDTLML---KMSEKDWDDVLN 112
Query: 127 TNHLGHYLFTLLLLPRIIKSAPARIINLSS 156
TN YL T + ++K +IIN++S
Sbjct: 113 TNLKSAYLCTKAVSKIMLKQKSGKIINITS 142
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} Length = 279 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 6e-22
Identities = 37/152 (24%), Positives = 59/152 (38%), Gaps = 16/152 (10%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
+TA VTG ++GIG A LA RG V R + A D +R +V
Sbjct: 22 SRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLR------AAGHDV 75
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFATN 128
D++S V ++ I +L+N+AG L + + TN
Sbjct: 76 DGSSCDVTSTDEVHAAVAAAVERFGPIGILVNSAGRNGGGETA---DLDDALWADVLDTN 132
Query: 129 HLGHYLFTLLLLPRI--IKSAPARIINLSSLA 158
G + T +L ++ RI+N++S
Sbjct: 133 LTGVFRVTREVLRAGGMREAGWGRIVNIASTG 164
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 Length = 245 | Back alignment and structure |
|---|
Score = 91.8 bits (229), Expect = 6e-22
Identities = 31/149 (20%), Positives = 58/149 (38%), Gaps = 19/149 (12%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RL K ++TG+ GIG+ T AK GAR++ AA+ +
Sbjct: 2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV-----------G 50
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFAT 127
+D++ SV + E L + + +++ AG+ ++ + +EL
Sbjct: 51 AHPVVMDVADPASVERGFAEALAHLGRLDGVVHYAGITRDNFHW---KMPLEDWELVLRV 107
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSS 156
N G +L + + P I+ +S
Sbjct: 108 NLTGSFLVAKAASEAMREKNPGSIVLTAS 136
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} Length = 281 | Back alignment and structure |
|---|
Score = 92.3 bits (230), Expect = 6e-22
Identities = 36/152 (23%), Positives = 64/152 (42%), Gaps = 14/152 (9%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL-EKAETAADDIRTSLKDVKDAG 71
+ KTA++TGS +GIG A LAK GA +++ ++ T D++ +G
Sbjct: 22 SMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAG-----LSSG 76
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFA 126
V+ D++ + + D +L+NNAGV + + ++ A
Sbjct: 77 TVLHHPADMTKPSEIADMMAMVADRFGGADILVNNAGVQFVEKIE---DFPVEQWDRIIA 133
Query: 127 TNHLGHYLFTLLLLPRIIKSAPARIINLSSLA 158
N + +P + K RIIN++S
Sbjct: 134 VNLSSSFHTIRGAIPPMKKKGWGRIINIASAH 165
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} PDB: 3gdf_A Length = 267 | Back alignment and structure |
|---|
Score = 91.8 bits (229), Expect = 1e-21
Identities = 33/207 (15%), Positives = 71/207 (34%), Gaps = 38/207 (18%)
Query: 13 RLDGKTAIVTGSNT--GIGKCTANELAKRGARVIMAC-RSLEKAETAADDIRTSLKDVKD 69
L GK +VTG++ G+G A A+ GA V + + AE ++ +
Sbjct: 17 SLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYG---- 72
Query: 70 AGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQ 124
+ + + S +S K ++++ + I I NAG ++ + + +
Sbjct: 73 -IKAKAYKCQVDSYESCEKLVKDVVADFGQIDAFIANAGATADSGIL---DGSVEAWNHV 128
Query: 125 FATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKG---YSATG 181
+ G + + + ++ +S++ G + N + Y+
Sbjct: 129 VQVDLNGTFHCAKAVGHHFKERGTGSLVITASMS-----GHI----ANFPQEQTSYNV-- 177
Query: 182 AYGRSKLANILFT----TELAKRLQVN 204
+K I E +VN
Sbjct: 178 ----AKAGCIHMARSLANEWRDFARVN 200
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* Length = 260 | Back alignment and structure |
|---|
Score = 91.5 bits (228), Expect = 1e-21
Identities = 40/151 (26%), Positives = 64/151 (42%), Gaps = 14/151 (9%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMA-CRSLEKAETAADDIRTSLKDVKDAGE 72
L GK A+VTGS +GIG A LA +GA +++ + E + +
Sbjct: 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQH-----GVK 56
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFAT 127
V+ DLS ++VR + I +L+NNAG+ + + ++ A
Sbjct: 57 VLYDGADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIE---DFPTEKWDAILAL 113
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSSLA 158
N + T LP + K RIIN++S
Sbjct: 114 NLSAVFHGTAAALPHMKKQGFGRIINIASAH 144
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* Length = 248 | Back alignment and structure |
|---|
Score = 90.6 bits (226), Expect = 2e-21
Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 13/148 (8%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L GK ++VTGS GIG+ A +LA G+ VI+ S E+A+ A++I +
Sbjct: 5 LQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKY-----GVKA 59
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFATN 128
+++L S +S+ K +EI + I +L+NNAG+ + +++ +E N
Sbjct: 60 HGVEMNLLSEESINKAFEEIYNLVDGIDILVNNAGITRDKLFL---RMSLLDWEEVLKVN 116
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSS 156
G +L T L ++IK RI+N+SS
Sbjct: 117 LTGTFLVTQNSLRKMIKQRWGRIVNISS 144
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* Length = 254 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 2e-21
Identities = 26/199 (13%), Positives = 55/199 (27%), Gaps = 40/199 (20%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
TAIVT G +A L++ G V S ++ + A
Sbjct: 2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELE------------AFAETYP 49
Query: 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAGV------MMCPRQLTEDGYELQFATNHL 130
QL S + + + + + +L++N + + + Y +
Sbjct: 50 QLKPMSEQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPID---KYAVEDYRGAVEALQI 106
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
+ + ++ K II ++S + Y ++
Sbjct: 107 RPFALVNAVASQMKKRKSGHIIFITSAT-----PFG---------PWKELSTYTSARAGA 152
Query: 191 ILFT----TELAKR-LQVN 204
EL + + V
Sbjct: 153 CTLANALSKELGEYNIPVF 171
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} Length = 246 | Back alignment and structure |
|---|
Score = 90.2 bits (225), Expect = 2e-21
Identities = 42/149 (28%), Positives = 81/149 (54%), Gaps = 15/149 (10%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMAC-RSLEKAETAADDIRTSLKDVKDAGE 72
L GK A+VTG++ GIG+ A +LAK+GA V++ + +KA D+I+ K +
Sbjct: 2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIK------KLGSD 55
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFAT 127
+ + D+++ + V ++ +D + +L+NNAGV +M ++ E+ ++ T
Sbjct: 56 AIAVRADVANAEDVTNMVKQTVDVFGQVDILVNNAGVTKDNLLM---RMKEEEWDTVINT 112
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSS 156
N G +L T + +++ RI+N++S
Sbjct: 113 NLKGVFLCTKAVSRFMMRQRHGRIVNIAS 141
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* Length = 269 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 3e-21
Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 15/149 (10%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARV-IMACRSLEKAETAADDIRTSLKDVKDAGE 72
L + A+VTG++ GIG+ A ELA GA+V + S A+ I + GE
Sbjct: 26 LTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAA------GGE 79
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFAT 127
+ D+S V +++ + +L+NNAG+ ++ ++ D ++
Sbjct: 80 AFAVKADVSQESEVEALFAAVIERWGRLDVLVNNAGITRDTLLL---RMKRDDWQSVLDL 136
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSS 156
N G +L + ++K RIIN++S
Sbjct: 137 NLGGVFLCSRAAAKIMLKQRSGRIINIAS 165
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} PDB: 3sj7_A* Length = 246 | Back alignment and structure |
|---|
Score = 89.8 bits (224), Expect = 4e-21
Identities = 39/149 (26%), Positives = 73/149 (48%), Gaps = 15/149 (10%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARV-IMACRSLEKAETAADDIRTSLKDVKDAGE 72
K+A+VTG++ GIG+ A +LA+ G V + S EKAE ++I+ +
Sbjct: 2 KMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIK------AKGVD 55
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFAT 127
Q +++ V+ +E++ ++ +L+NNAG+ +M ++ E ++ T
Sbjct: 56 SFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGITRDNLLM---RMKEQEWDDVIDT 112
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSS 156
N G + P++++ IINLSS
Sbjct: 113 NLKGVFNCIQKATPQMLRQRSGAIINLSS 141
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... Length = 288 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 4e-21
Identities = 42/213 (19%), Positives = 75/213 (35%), Gaps = 42/213 (19%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACR-SLEKAETAADDIRTSLKDVKDA 70
+ ++ A+VTG+ IG+ A +L + G RV++ S E A + AD++ +
Sbjct: 19 SHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKER-----S 73
Query: 71 GEVVIRQLDLSSLKSVRKCAQEILDNESA----IHLLINNAGVM------------MCPR 114
V+ Q DL++ + +EI+++ +L+NNA
Sbjct: 74 NTAVVCQADLTNSNVLPASCEEIINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNG 133
Query: 115 QLTEDGYELQFATNHLGHYLFT------LLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168
+ E TN + +L T S+ I+NL
Sbjct: 134 KTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNLCD------------ 181
Query: 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRL 201
+++ A Y K A + T A L
Sbjct: 182 --AMVDQPCMAFSLYNMGKHALVGLTQSAALEL 212
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} Length = 278 | Back alignment and structure |
|---|
Score = 90.3 bits (225), Expect = 4e-21
Identities = 50/199 (25%), Positives = 82/199 (41%), Gaps = 23/199 (11%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMA--CRSLEKAETA---ADDIRTSLKDV 67
L GK A +TG+ G G+ A LA GA +I C + +++ ++K V
Sbjct: 10 PLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLV 69
Query: 68 KDAG-EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFA 126
+D G +V RQ D+ +S+ Q LD + +++ NAG+ P +DG+
Sbjct: 70 EDIGSRIVARQADVRDRESLSAALQAGLDELGRLDIVVANAGI--APMSAGDDGWHDVID 127
Query: 127 TNHLGHYLFTLLLLPRIIKS-APARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGR 185
N G Y + +P ++K I+ +SS A G GS + Y A
Sbjct: 128 VNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGVGSADPGSVG----YVA------ 177
Query: 186 SKLANILFT----TELAKR 200
+K + LA +
Sbjct: 178 AKHGVVGLMRVYANLLAGQ 196
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A Length = 266 | Back alignment and structure |
|---|
Score = 89.5 bits (223), Expect = 5e-21
Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 17/148 (11%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L G+ A+VTG+ GIG+ A +GA V + +K + A D+ +V
Sbjct: 25 LTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADL---------GKDV 75
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFATN 128
+ +LS KS+++ A+ I +L+NNAG+ + ++ + ++ A N
Sbjct: 76 FVFSANLSDRKSIKQLAEVAEREMEGIDILVNNAGITRDGLFV---RMQDQDWDDVLAVN 132
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSS 156
T L+ +++ RIIN++S
Sbjct: 133 LTAASTLTRELIHSMMRRRYGRIINITS 160
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} Length = 264 | Back alignment and structure |
|---|
Score = 89.2 bits (222), Expect = 8e-21
Identities = 31/152 (20%), Positives = 55/152 (36%), Gaps = 17/152 (11%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIM-ACRSLEKAETAADDIRTSLKDVKDAG 71
+ A++T G+GK +L +G V + ET + +
Sbjct: 4 GRFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYK------DVEE 57
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-------MMCPRQLTEDGYELQ 124
+ Q D++ + + K +E + + I LINNAG ++ ED +
Sbjct: 58 RLQFVQADVTKKEDLHKIVEEAMSHFGKIDFLINNAGPYVFERKKLV---DYEEDEWNEM 114
Query: 125 FATNHLGHYLFTLLLLPRIIKSAPARIINLSS 156
N + L++P + K RIIN
Sbjct: 115 IQGNLTAVFHLLKLVVPVMRKQNFGRIINYGF 146
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} Length = 244 | Back alignment and structure |
|---|
Score = 88.3 bits (220), Expect = 1e-20
Identities = 27/191 (14%), Positives = 53/191 (27%), Gaps = 33/191 (17%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSL-EKAETAADDIRTSLKDVKDAGEVVI 75
A+VT + G L + G V+ S + AE + +
Sbjct: 2 VIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESENPGTIALAEQK--- 58
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFATNHL 130
+ L + AI +++N + + +E F +
Sbjct: 59 ----------PERLVDATLQHGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSI 108
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
L + + + A +I ++S G + YG ++ A
Sbjct: 109 FPILLLQSAIAPLRAAGGASVIFITSSV-----GKK---------PLAYNPLYGPARAAT 154
Query: 191 ILFTTELAKRL 201
+ AK L
Sbjct: 155 VALVESAAKTL 165
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 Length = 249 | Back alignment and structure |
|---|
Score = 88.0 bits (219), Expect = 2e-20
Identities = 26/153 (16%), Positives = 58/153 (37%), Gaps = 29/153 (18%)
Query: 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDA 70
+ + K +V ++ GIG+ A+ L++ GA V + R+ E + + D++
Sbjct: 14 ELGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYVVC--DLRKD 71
Query: 71 GEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR-----QLTEDGYELQF 125
+ + + +L+ NAG P+ +LT + ++
Sbjct: 72 -------------------LDLLFEKVKEVDILVLNAGG---PKAGFFDELTNEDFKEAI 109
Query: 126 ATNHLGHYLFTLLLLPRIIKSAPARIINLSSLA 158
+ L LP + + RI+ ++S +
Sbjct: 110 DSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFS 142
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} Length = 251 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 2e-20
Identities = 21/190 (11%), Positives = 46/190 (24%), Gaps = 37/190 (19%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
K +V G + +G + I D R ++
Sbjct: 19 SHMSKNILVLGGSGALGAEVVKFFKSKSWNTISI------------DFR------ENPNA 60
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTE---DGYELQFATNH 129
+ S + ++ ++I + + AG ++ + N
Sbjct: 61 DHSFTIKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNL 120
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
+ + + + + + A M AYG +K A
Sbjct: 121 YSAFASAHIGAKLLNQG--GLFVLTGASAALNRTSGM--------------IAYGATKAA 164
Query: 190 NILFTTELAK 199
+LA
Sbjct: 165 THHIIKDLAS 174
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} Length = 244 | Back alignment and structure |
|---|
Score = 87.6 bits (218), Expect = 2e-20
Identities = 30/191 (15%), Positives = 54/191 (28%), Gaps = 39/191 (20%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVI 75
+VTG + GIGK L + ++ + A +
Sbjct: 4 MANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFS---------------AENLKF 48
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNHLGHY 133
+ DL+ + + I + + NAG+++ + + + N
Sbjct: 49 IKADLTKQQDITNVLDII--KNVSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSI 106
Query: 134 LFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILF 193
F L + A I+ S + + AY SK A
Sbjct: 107 YFIKGLENNLKVG--ASIVFNGSDQ-----CFI---------AKPNSFAYTLSKGAIAQM 150
Query: 194 T----TELAKR 200
T +LAK
Sbjct: 151 TKSLALDLAKY 161
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} Length = 266 | Back alignment and structure |
|---|
Score = 88.0 bits (219), Expect = 2e-20
Identities = 34/193 (17%), Positives = 59/193 (30%), Gaps = 39/193 (20%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
+GK A+VTG+ GIG L GARV +A R++
Sbjct: 24 QGFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAAD--------------- 68
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFA 126
+ DL + + +++NNAGV + + T+ + L
Sbjct: 69 --LHLPGDLREAAYADGLPGAVAAGLGRLDIVVNNAGVISRGRIT---ETTDADWSLSLG 123
Query: 127 TNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRS 186
N + +P + + I+N++S Y +
Sbjct: 124 VNVEAPFRICRAAIPLMAAAGGGAIVNVASCWGLRPGPGH--------------ALYCLT 169
Query: 187 KLANILFTTELAK 199
K A T +
Sbjct: 170 KAALASLTQCMGM 182
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} Length = 256 | Back alignment and structure |
|---|
Score = 87.6 bits (218), Expect = 2e-20
Identities = 31/150 (20%), Positives = 61/150 (40%), Gaps = 15/150 (10%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMAC-RSLEKAETAADDIRTSLKDVKDAG 71
+ + A VTG GIG L K G RV+ C + + +D +
Sbjct: 10 VMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQK------ALGF 63
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFA 126
+ + ++ S ++ ++ I +L+NNAG+ ++T + ++
Sbjct: 64 DFYASEGNVGDWDSTKQAFDKVKAEVGEIDVLVNNAGITRDVVFR---KMTREDWQAVID 120
Query: 127 TNHLGHYLFTLLLLPRIIKSAPARIINLSS 156
TN + T ++ +++ RIIN+SS
Sbjct: 121 TNLTSLFNVTKQVIDGMVERGWGRIINISS 150
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} Length = 245 | Back alignment and structure |
|---|
Score = 87.6 bits (218), Expect = 2e-20
Identities = 29/170 (17%), Positives = 58/170 (34%), Gaps = 24/170 (14%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L K A+VTG+ G+G +L++ + R+ E A+
Sbjct: 2 SLKKKIAVVTGATGGMGIEIVKDLSRDHIVYALG-RNPEHLAALAEIEG----------- 49
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNHL 130
V + D+ ++ N + L++ A V + + N +
Sbjct: 50 VEPIESDIVKEVLEEGGVDKL-KNLDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVI 108
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSAT 180
+ LLP +++A +I ++S A G+ Y+A+
Sbjct: 109 VPAELSRQLLP-ALRAASGCVIYINSGA-----GNGPHPGNT---IYAAS 149
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A Length = 255 | Back alignment and structure |
|---|
Score = 87.3 bits (217), Expect = 3e-20
Identities = 40/150 (26%), Positives = 64/150 (42%), Gaps = 16/150 (10%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L GKTA+VTGS +GIG A LA+ GA +++ A +I + +
Sbjct: 2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFG--DPAPALAEIA------RHGVKA 53
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFATN 128
V DLS + + + +L+NNAG+ + Q + ++ A N
Sbjct: 54 VHHPADLSDVAQIEALFALAEREFGGVDILVNNAGIQHVAPVE---QFPLESWDKIIALN 110
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSLA 158
+ T L LP + RIIN++S+
Sbjct: 111 LSAVFHGTRLALPGMRARNWGRIINIASVH 140
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} Length = 324 | Back alignment and structure |
|---|
Score = 88.7 bits (220), Expect = 3e-20
Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 3/145 (2%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVI 75
K ++TG+++G G+ TA LA G RV + R + + + D +
Sbjct: 5 KKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVD-LRT 63
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMM--CPRQLTEDGYELQFATNHLGHY 133
+LD+ S SV + +I+ + I +LI+NAG M+ T + + + N L
Sbjct: 64 LELDVQSQVSVDRAIDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQ 123
Query: 134 LFTLLLLPRIIKSAPARIINLSSLA 158
LP + + +I +SS +
Sbjct: 124 RVNRAALPHMRRQKHGLLIWISSSS 148
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} Length = 269 | Back alignment and structure |
|---|
Score = 86.8 bits (216), Expect = 6e-20
Identities = 30/149 (20%), Positives = 63/149 (42%), Gaps = 15/149 (10%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMAC-RSLEKAETAADDIRTSLKDVKDAGE 72
+ A VTG G+G + L G V ++ + T R + +
Sbjct: 23 QAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDA------GRD 76
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFAT 127
+D++ +S +CA+++L + + +LINNAG+ M ++T+ ++ T
Sbjct: 77 FKAYAVDVADFESCERCAEKVLADFGKVDVLINNAGITRDATFM---KMTKGDWDAVMRT 133
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSS 156
+ + T + +++ RI+N+ S
Sbjct: 134 DLDAMFNVTKQFIAGMVERRFGRIVNIGS 162
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* Length = 291 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 9e-20
Identities = 32/225 (14%), Positives = 58/225 (25%), Gaps = 49/225 (21%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACR-SLEKAETAADDIRTSL------ 64
T A+VTG+ +G+ A L G V + S +A + +
Sbjct: 5 TAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAIT 64
Query: 65 --KDVKDAGEVVIR----QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM-------- 110
D+ + + ++ + + +L+NNA
Sbjct: 65 VQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRN 124
Query: 111 --------MCPRQLTEDGYELQFATNHLGHYLFT------LLLLPRIIKSAPARIINLSS 156
+ R+ E F +N + Y + P + IIN+
Sbjct: 125 DEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVD 184
Query: 157 LAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRL 201
+ Y +K A T A L
Sbjct: 185 --------------AMTNQPLLGYTIYTMAKGALEGLTRSAALEL 215
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G Length = 244 | Back alignment and structure |
|---|
Score = 85.2 bits (212), Expect = 1e-19
Identities = 37/146 (25%), Positives = 66/146 (45%), Gaps = 15/146 (10%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMA-CRSLEKAETAADDIRTSLKDVKDAGEVVI 75
+VTG++ GIGK A L K G +V++ RS + AE + I G+ +
Sbjct: 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAY------GGQAIT 55
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFATNHL 130
D+S V + +D I +++NNAG+ ++ ++ + ++ N
Sbjct: 56 FGGDVSKEADVEAMMKTAIDAWGTIDVVVNNAGITRDTLLI---RMKKSQWDEVIDLNLT 112
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSS 156
G +L T ++K RIIN++S
Sbjct: 113 GVFLCTQAATKIMMKKRKGRIINIAS 138
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* Length = 241 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 1e-19
Identities = 22/192 (11%), Positives = 50/192 (26%), Gaps = 33/192 (17%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
+ + +V G +G R V + +A+ ++ + + A +
Sbjct: 4 SGEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVIVKMTDSFTEQADQ 63
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR---QLTEDGYELQFATNH 129
V L + + ++ AG + +L + +
Sbjct: 64 VTA--------------EVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSI 109
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
+ + L + + + + A G M YG +K A
Sbjct: 110 WTSTISSHLATKHLKEG--GLLTLAGAKAALDGTPGM--------------IGYGMAKGA 153
Query: 190 NILFTTELAKRL 201
LA +
Sbjct: 154 VHQLCQSLAGKN 165
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} Length = 299 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 2e-19
Identities = 40/210 (19%), Positives = 82/210 (39%), Gaps = 28/210 (13%)
Query: 5 SGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMA--CRSLEKAETA---ADD 59
G + +++GK A +TG+ G G+ A LA+ GA +I C+ L+ + DD
Sbjct: 17 QGPGSMAGKVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDD 76
Query: 60 IRTSLKDVKDAG-EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM---MCPRQ 115
+ +++ V+ G ++ Q+D+ +++ + + + +++ NA + +
Sbjct: 77 LAETVRQVEALGRRIIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNR 136
Query: 116 LTEDGYELQFATNHLGHYLFTLLLLPRIIKSAP-ARIINLSSLAHTWGDGSMHFEDINLE 174
+ + N G ++ + +P I+ I+ SS+ G
Sbjct: 137 MDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIG---G-----------L 182
Query: 175 KGYSATGAYGRSKLANILFT----TELAKR 200
+G G Y SK EL R
Sbjct: 183 RGAENIGNYIASKHGLHGLMRTMALELGPR 212
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 Length = 328 | Back alignment and structure |
|---|
Score = 86.0 bits (213), Expect = 3e-19
Identities = 32/225 (14%), Positives = 58/225 (25%), Gaps = 49/225 (21%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACR-SLEKAETAADDIRTSL------ 64
T A+VTG+ +G+ A L G V + S +A + +
Sbjct: 42 TAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAIT 101
Query: 65 --KDVKDAGEVVIR----QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM-------- 110
D+ + + ++ + + +L+NNA
Sbjct: 102 VQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRN 161
Query: 111 --------MCPRQLTEDGYELQFATNHLGHYLFT------LLLLPRIIKSAPARIINLSS 156
+ R+ E F +N + Y + P + IIN+
Sbjct: 162 DEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVD 221
Query: 157 LAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRL 201
+ Y +K A T A L
Sbjct: 222 --------------AMTNQPLLGYTIYTMAKGALEGLTRSAALEL 252
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} Length = 249 | Back alignment and structure |
|---|
Score = 84.1 bits (209), Expect = 4e-19
Identities = 32/148 (21%), Positives = 71/148 (47%), Gaps = 21/148 (14%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L GKT+++TG+++GIG A L K G++VI++ + EK ++ + +
Sbjct: 12 LTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNAL---------KDNY 62
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFATN 128
I +L++ + ++ S + +L+ NAG+ + ++ + ++ N
Sbjct: 63 TIEVCNLANKEEC----SNLISKTSNLDILVCNAGITSDTLAI---RMKDQDFDKVIDIN 115
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSS 156
+++ + ++I+ RIIN+SS
Sbjct: 116 LKANFILNREAIKKMIQKRYGRIINISS 143
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} Length = 281 | Back alignment and structure |
|---|
Score = 84.1 bits (209), Expect = 6e-19
Identities = 44/202 (21%), Positives = 80/202 (39%), Gaps = 30/202 (14%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIM--ACRSLEKAETA---ADDIRTSLKDV 67
+GKTA++TG G+G+ A LA+ GA + + C + + ADD+ ++ V
Sbjct: 7 DFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALV 66
Query: 68 KDAG-EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQL----TEDGYE 122
+ G + ++D+ ++ E D I + I NAG+ L ++
Sbjct: 67 EKTGRRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGI--STIALLPEVESAQWD 124
Query: 123 LQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGD-GSMHFEDINLEKGYSAT- 180
TN G + + P +IK RI+ +SS+ + Y ++
Sbjct: 125 EVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHSANFAQAS---------YVSSK 175
Query: 181 -GAYGRSK-LANILFTTELAKR 200
G G +K A+ +L
Sbjct: 176 WGVIGLTKCAAH-----DLVGY 192
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A Length = 239 | Back alignment and structure |
|---|
Score = 83.3 bits (207), Expect = 6e-19
Identities = 40/202 (19%), Positives = 76/202 (37%), Gaps = 48/202 (23%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
+ A+VTG + GIG+ A L RG RV +A R+ E+A + V
Sbjct: 3 RKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEAAQSL--------------GAVPL 48
Query: 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQF----ATNHLGH 132
DL + + L+ +H+L++ A + R+ + ++ +
Sbjct: 49 PTDLEK-DDPKGLVKRALEALGGLHVLVHAAA--VNVRKPALELSYEEWRRVLYLHLDVA 105
Query: 133 YLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATG-----AYGRSK 187
+L P + ++ R++ + S+ ++A G AY +K
Sbjct: 106 FLLAQAAAPHMAEAGWGRVLFIGSVT-----------------TFTAGGPVPIPAYTTAK 148
Query: 188 LANILFT----TELAKR-LQVN 204
A + T E A+ ++VN
Sbjct: 149 TALLGLTRALAKEWARLGIRVN 170
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} Length = 317 | Back alignment and structure |
|---|
Score = 84.6 bits (210), Expect = 7e-19
Identities = 46/203 (22%), Positives = 83/203 (40%), Gaps = 31/203 (15%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMA--CRSLEKAETA---ADDIRTSLKDV 67
RL GK A +TG+ G G+ A LA+ GA ++ CR + A ++++ +++ V
Sbjct: 43 RLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLV 102
Query: 68 KDAG-EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQL----TEDGYE 122
++ G ++ RQ D+ L S++ E L I +L++N G+ + T+ +
Sbjct: 103 EEQGRRIIARQADVRDLASLQAVVDEALAEFGHIDILVSNVGI--SNQGEVVSLTDQQWS 160
Query: 123 LQFATNHLGHYLFTLLLLPRIIKSAP-ARIINLSSLAHTWGDGSMHFEDINLEKGYSATG 181
TN +G + +LP +I+ +I +SS G G
Sbjct: 161 DILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTV-----GLR---------GAPGQS 206
Query: 182 AYGRSKLANILFT----TELAKR 200
Y SK E+ +
Sbjct: 207 HYAASKHGVQGLMLSLANEVGRH 229
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... Length = 327 | Back alignment and structure |
|---|
Score = 84.4 bits (209), Expect = 8e-19
Identities = 33/147 (22%), Positives = 58/147 (39%), Gaps = 10/147 (6%)
Query: 17 KTAIVTGSNTGIGKCTANELAK---RGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
++TG ++GIG A LA + +V R L+ + R G +
Sbjct: 3 TVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALA---CPPGSL 59
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-MMCP-RQLTEDGYELQFATNHLG 131
QLD+ KSV + + + + +L+ NAG+ ++ P L ED N +G
Sbjct: 60 ETLQLDVRDSKSVAAARERVTEG--RVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVG 117
Query: 132 HYLFTLLLLPRIIKSAPARIINLSSLA 158
LP + + R++ S+
Sbjct: 118 TVRMLQAFLPDMKRRGSGRVLVTGSVG 144
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} Length = 280 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 9e-19
Identities = 46/202 (22%), Positives = 85/202 (42%), Gaps = 28/202 (13%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMA--CRSLEKAETA----ADDIRTSLKD 66
L G+ A +TG+ G G+ A LA GA +I C + + T +D+ + +
Sbjct: 12 SLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARL 71
Query: 67 VKDAG-EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYEL 123
V+D G + + R LD+ ++R+ + ++ + +++ NAGV+ R +LT++ ++
Sbjct: 72 VEDQGRKALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDT 131
Query: 124 QFATNHLGHYLFTLLLLPRIIKSAP-ARIINLSSLAHTWGDGSMHFEDINLEKGYSATGA 182
N G + +P +I++ I+ +SS A G G
Sbjct: 132 VIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSA-----GLK---------ATPGNGH 177
Query: 183 YGRSKLANILFT----TELAKR 200
Y SK T EL +
Sbjct: 178 YSASKHGLTALTNTLAIELGEY 199
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} Length = 277 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 9e-19
Identities = 45/202 (22%), Positives = 74/202 (36%), Gaps = 28/202 (13%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMA--CRSLEKAETA----ADDIRTSLKD 66
+L+G+ A +TG+ G G+ A +A GA +I L DD+ +++
Sbjct: 8 KLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRL 67
Query: 67 VKDAG-EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYEL 123
V+ A +V +D +RK + + + +++ NAGV +T + +
Sbjct: 68 VEAANRRIVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRD 127
Query: 124 QFATNHLGHYLFTLLLLPRIIKSAP-ARIINLSSLAHTWGDGSMHFEDINLEKGYSATGA 182
N G + + PRII+ II +SS A G
Sbjct: 128 VMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAA-----GMK---------MQPFMIH 173
Query: 183 YGRSKLANILFT----TELAKR 200
Y SK A EL K
Sbjct: 174 YTASKHAVTGLARAFAAELGKH 195
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A Length = 247 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 9e-19
Identities = 29/152 (19%), Positives = 62/152 (40%), Gaps = 25/152 (16%)
Query: 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKD 69
A ++ +VTG N GIG A LA G +V + R +
Sbjct: 9 AKPPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK--------------- 53
Query: 70 AGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQ 124
+ ++D++ +V + + +++ + +L++NAG+ +M ++TE+ +E
Sbjct: 54 --GLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLM---RMTEEKFEKV 108
Query: 125 FATNHLGHYLFTLLLLPRIIKSAPARIINLSS 156
N G + + ++ R+I + S
Sbjct: 109 INANLTGAFRVAQRASRSMQRNKFGRMIFIGS 140
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} Length = 245 | Back alignment and structure |
|---|
Score = 82.9 bits (206), Expect = 1e-18
Identities = 31/146 (21%), Positives = 70/146 (47%), Gaps = 14/146 (9%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMAC-RSLEKAETAADDIRTSLKDVKDAGEVVI 75
+ A++TG++ GIG+ A LA+ G + + ++ EKAE A++ R + + V +
Sbjct: 2 RKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARR-----RGSPLVAV 56
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFATNHL 130
+L ++ + + + L+NNAG+ ++ ++ ++ +E N
Sbjct: 57 LGANLLEAEAATALVHQAAEVLGGLDTLVNNAGITRDTLLV---RMKDEDWEAVLEANLS 113
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSS 156
+ T + ++K+ RI+N++S
Sbjct: 114 AVFRTTREAVKLMMKARFGRIVNITS 139
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} Length = 255 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 2e-18
Identities = 36/195 (18%), Positives = 52/195 (26%), Gaps = 33/195 (16%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAE---TAADDIRTSLKDVKDAGEV 73
+TGS +GIG LA+ G VI R E + T++ V D
Sbjct: 2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRETAVAAVLDRCGG 61
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQL----TEDGYELQFATNH 129
V+ L V + S + + +N GV L +
Sbjct: 62 VLDGL-------VCCAGVGVTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGS 114
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
+ LP + LA G + AY SK A
Sbjct: 115 IAATQPGAAELPMVEAMLAGDEARAIELAEQQGQTHL---------------AYAGSKYA 159
Query: 190 NILFT----TELAKR 200
+ A R
Sbjct: 160 VTCLARRNVVDWAGR 174
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} Length = 202 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 2e-18
Identities = 24/196 (12%), Positives = 63/196 (32%), Gaps = 50/196 (25%)
Query: 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVV 74
+ ++ G++ +G L + A VI A R +G+V
Sbjct: 2 NAMKILLIGASGTLGSAVKERLE-KKAEVITAGRH--------------------SGDV- 39
Query: 75 IRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM-MCP-RQLTEDGYELQFATNHLGH 132
+D++++ S++K +++ + +++ G P +LT + + ++ G
Sbjct: 40 --TVDITNIDSIKKMYEQV----GKVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQ 93
Query: 133 YLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANIL 192
LL + + + + + + A
Sbjct: 94 INLVLLGIDSLNDK--GSFTLTTGIMME--------------DPIVQGASAAMANGAVTA 137
Query: 193 FT----TELAKRLQVN 204
F E+ + +++N
Sbjct: 138 FAKSAAIEMPRGIRIN 153
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} PDB: 3uwr_A* Length = 286 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 2e-18
Identities = 42/206 (20%), Positives = 78/206 (37%), Gaps = 32/206 (15%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMA--CRSLEKAETA-------ADDIRTS 63
R++GK A VTG+ G G+ A LA+ GA +I C+ + +D+ +
Sbjct: 8 RVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAET 67
Query: 64 LKDVKDAG-EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR---QLTED 119
VK +V ++D+ +++ ++ + +++ NAG+ + +E+
Sbjct: 68 ADLVKGHNRRIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEE 127
Query: 120 GYELQFATNHLGHYLFTLLLLPRIIKSAP-ARIINLSSLAHTWGDGSMHFEDINLEKGYS 178
+ N G + +P +I II SS+ G K Y
Sbjct: 128 DWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSVG---G-----------LKAYP 173
Query: 179 ATGAYGRSKLANILFT----TELAKR 200
TG Y +K + EL +
Sbjct: 174 HTGHYVAAKHGVVGLMRAFGVELGQH 199
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} Length = 281 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 2e-18
Identities = 31/159 (19%), Positives = 59/159 (37%), Gaps = 22/159 (13%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
+ +G +AIV+G G+G+ T L G V++A + EK + AD++
Sbjct: 27 QFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADEL---------GNR 77
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYEL---QF---- 125
+++S SV + + ++ + G + R + DG F
Sbjct: 78 AEFVSTNVTSEDSVLAAIEAANQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTI 137
Query: 126 ATNHLGHYLFTLLLLPRIIKSAPA------RIINLSSLA 158
G Y L+ I + P ++ +S+A
Sbjct: 138 DLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIA 176
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} Length = 253 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 2e-18
Identities = 33/148 (22%), Positives = 62/148 (41%), Gaps = 25/148 (16%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
++ +VTG N GIG A A G +V + RS E E
Sbjct: 19 HMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPE-----------------GF 61
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFATN 128
+ + D++ + V + +EI + + +LI NAGV +M +++E+ + TN
Sbjct: 62 LAVKCDITDTEQVEQAYKEIEETHGPVEVLIANAGVTKDQLLM---RMSEEDFTSVVETN 118
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSS 156
G + ++++ R++ +SS
Sbjct: 119 LTGTFRVVKRANRAMLRAKKGRVVLISS 146
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* Length = 291 | Back alignment and structure |
|---|
Score = 82.6 bits (205), Expect = 2e-18
Identities = 48/193 (24%), Positives = 87/193 (45%), Gaps = 26/193 (13%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG- 71
+L GK ++TG ++GIG+ + AK GA + +A E A++ + + V+ G
Sbjct: 44 KLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEG---DANETK---QYVEKEGV 97
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-MMCPR--QLTEDGYELQFATN 128
+ V+ DLS + + QE + ++++L+NN +T + E F N
Sbjct: 98 KCVLLPGDLSDEQHCKDIVQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRIN 157
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
++ T L + + IIN +S+ G+ ++ I+ YSAT K
Sbjct: 158 IFSYFHVTKAALSHLKQG--DVIINTASIVAYEGNETL----ID----YSAT------KG 201
Query: 189 ANILFTTELAKRL 201
A + FT L++ L
Sbjct: 202 AIVAFTRSLSQSL 214
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* Length = 257 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 4e-18
Identities = 34/197 (17%), Positives = 63/197 (31%), Gaps = 43/197 (21%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
+++G TGIG T L G +++ D++DA +
Sbjct: 2 SIIVISGCATGIGAATRKVLEAAGHQIVGI-------------------DIRDAEVIA-- 40
Query: 77 QLDLSSLKSVRKCAQEILDNES-AIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLF 135
DLS+ + ++ ++L S + L+ AG+ + N+ G
Sbjct: 41 --DLSTAEGRKQAIADVLAKCSKGMDGLVLCAGLGP-----QTKVLGNVVSVNYFGATEL 93
Query: 136 TLLLLPRIIKSAPARIINLSSLA--------------HTWGDGSMHFEDINLEKGYSATG 181
LP + K + +SS+A G+ + +
Sbjct: 94 MDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGEQGGNL 153
Query: 182 AYGRSKLANILFTTELA 198
AY SK A + + A
Sbjct: 154 AYAGSKNALTVAVRKRA 170
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} Length = 207 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 4e-18
Identities = 23/143 (16%), Positives = 46/143 (32%), Gaps = 23/143 (16%)
Query: 18 TAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQ 77
++TG+ G+G A A +G ++++ R A ++ +
Sbjct: 2 RVLITGATGGLGGAFA--RALKGHDLLLSGRRAGALAELAREVG---------ARAL--P 48
Query: 78 LDLSSLKSVRKCAQEILDNESAIHLLINNAGVM--MCPRQLTEDGYELQFATNHLGHYLF 135
DL+ + +E + LL++ G R+ D E A + L
Sbjct: 49 ADLADELEAKALLEEA----GPLDLLVHAVGKAGRASVREAGRDLVEEMLAAHLLT---- 100
Query: 136 TLLLLPRIIKSAPARIINLSSLA 158
+L AR + +
Sbjct: 101 AAFVLKHARFQKGARAVFFGAYP 123
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} Length = 257 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 9e-18
Identities = 33/158 (20%), Positives = 57/158 (36%), Gaps = 21/158 (13%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
+L + IVTG+++G+G LA+ GA V+ E A ++
Sbjct: 4 QLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAEL---------GAA 54
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDG------YELQFA 126
V R D+++ +H L+N AG + L G + A
Sbjct: 55 VRFRNADVTNEADATAALAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVA 114
Query: 127 TNHLGHYLFTLLLLPRIIKSAPA------RIINLSSLA 158
N +G + L + + P I+N +S+A
Sbjct: 115 VNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIA 152
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 236 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 1e-17
Identities = 24/193 (12%), Positives = 49/193 (25%), Gaps = 37/193 (19%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
+ IV G +G K G V+ S A
Sbjct: 1 MSSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN----------------DQADSN 44
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESA--IHLLINNAGVMMCPRQLTEDGYE---LQFATN 128
++ + + + + ++ + + + AG ++D + L +
Sbjct: 45 ILVDGNKNWTEQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQS 104
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
+ L + + + A SM YG +K
Sbjct: 105 VWSSAIAAKLATTHLKPG--GLLQLTGAAAAMGPTPSM--------------IGYGMAKA 148
Query: 189 ANILFTTELAKRL 201
A T+ LA +
Sbjct: 149 AVHHLTSSLAAKD 161
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* Length = 265 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 6e-17
Identities = 31/160 (19%), Positives = 60/160 (37%), Gaps = 23/160 (14%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
+ G A++TG +G+G TA L +GA ++ E A +
Sbjct: 9 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL---------GNN 59
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--------QLTEDGYELQ 124
V D++S K V+ + + +N AG+ + + T + ++
Sbjct: 60 CVFAPADVTSEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRV 119
Query: 125 FATNHLGHYLFTLLLLPRIIKSAPA------RIINLSSLA 158
N +G + L+ + ++ P IIN +S+A
Sbjct: 120 LDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVA 159
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} Length = 281 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 8e-17
Identities = 41/187 (21%), Positives = 66/187 (35%), Gaps = 29/187 (15%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
K +VTG+++G G+ A G VI R E +
Sbjct: 6 KVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVA---------AYPDRAEAI 56
Query: 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNHLGHYL 134
LD++ + + A ++L + +L+NNAG + TE F + G
Sbjct: 57 SLDVTDGERIDVVAADVLARYGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPAR 116
Query: 135 FTLLLLP--RIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANIL 192
T LLP R S ++N+SS G + ++ AY +K A
Sbjct: 117 LTRALLPQMRERGS--GSVVNISSFG-----GQL---------SFAGFSAYSATKAALEQ 160
Query: 193 FTTELAK 199
+ LA
Sbjct: 161 LSEGLAD 167
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} Length = 322 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 1e-16
Identities = 49/211 (23%), Positives = 77/211 (36%), Gaps = 44/211 (20%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVI----------MACRSLEKAETAADDIRT 62
+DG+ IVTG+ GIG+ A A GARV+ A++ D+I
Sbjct: 24 VVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEIT- 82
Query: 63 SLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR-----QLT 117
GE V +++ Q ++ + +L+NNAG++ R +
Sbjct: 83 -----AAGGEAVADGSNVADWDQAAGLIQTAVETFGGLDVLVNNAGIV---RDRMIANTS 134
Query: 118 EDGYELQFATNHLGHYLFT------LLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDI 171
E+ ++ A + GH+ L + K+ RIIN SS A G
Sbjct: 135 EEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAGLQG----SVGQG 190
Query: 172 NLEKGYSATGAYGRSKLANILFTTELAKRLQ 202
N YSA +K T A +
Sbjct: 191 N----YSA------AKAGIATLTLVGAAEMG 211
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A Length = 454 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 1e-16
Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 18/149 (12%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
LDGK A+VTG+ GIG A A+ GA V+ AA+D++ V
Sbjct: 211 LDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVD-----GAAEDLKRVADKVGGTA-- 263
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESA-IHLLINNAGV-----MMCPRQLTEDGYELQFAT 127
LD+++ +V K + ++ + +L+NNAG+ + + E ++ A
Sbjct: 264 --LTLDVTADDAVDKITAHVTEHHGGKVDILVNNAGITRDKLLA---NMDEKRWDAVIAV 318
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSS 156
N L T L+ R+I LSS
Sbjct: 319 NLLAPQRLTEGLVGNGTIGEGGRVIGLSS 347
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* Length = 319 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 2e-16
Identities = 45/205 (21%), Positives = 86/205 (41%), Gaps = 40/205 (19%)
Query: 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVI---------MACRSLEKAETAADD 59
+ R DG+ +VTG+ G+G+ A A+RGA V+ + A+ ++
Sbjct: 2 ASPLRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEE 61
Query: 60 IRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR----- 114
IR + G+ V + S+++ K + LD I +++NNAG++ R
Sbjct: 62 IR------RRGGKAVA---NYDSVEAGEKLVKTALDTFGRIDVVVNNAGIL---RDRSFS 109
Query: 115 QLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLE 174
+++++ +++ + G + T + K RII +S + +G +F N
Sbjct: 110 RISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYG----NFGQAN-- 163
Query: 175 KGYSATGAYGRSKLANILFTTELAK 199
YSA +KL + L
Sbjct: 164 --YSA------AKLGLLGLANTLVI 180
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} Length = 604 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 7e-16
Identities = 53/204 (25%), Positives = 87/204 (42%), Gaps = 40/204 (19%)
Query: 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVI---------MACRSLEKAETAADDI 60
+ K I+TG+ G+GK + E AK GA+V+ + + A+ D+I
Sbjct: 2 SPVDFKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEI 61
Query: 61 RTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR-----Q 115
K+ G V D +++ K + + N +H++INNAG++ R +
Sbjct: 62 V------KNGGVAVA---DYNNVLDGDKIVETAVKNFGTVHVIINNAGIL---RDASMKK 109
Query: 116 LTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEK 175
+TE Y+L + G + T P K RI+N SS A +G +F N
Sbjct: 110 MTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAGLYG----NFGQAN--- 162
Query: 176 GYSATGAYGRSKLANILFTTELAK 199
Y++ +K A + F LAK
Sbjct: 163 -YAS------AKSALLGFAETLAK 179
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} Length = 604 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 8e-12
Identities = 37/164 (22%), Positives = 71/164 (43%), Gaps = 32/164 (19%)
Query: 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRT-------S 63
L K ++TG+ G+GK A AK GA+V++ + A D+I+
Sbjct: 317 TVSLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVN--DFKDATKTVDEIKAAGGEAWPD 374
Query: 64 LKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR-----QLTE 118
DV E +I + ++D I +L+NNAG++ R ++++
Sbjct: 375 QHDVAKDSEAII---------------KNVIDKYGTIDILVNNAGIL---RDRSFAKMSK 416
Query: 119 DGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWG 162
++ + +G + + L P ++ RIIN++S + +G
Sbjct: 417 QEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSGIYG 460
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} Length = 613 | Back alignment and structure |
|---|
Score = 76.4 bits (188), Expect = 1e-15
Identities = 48/207 (23%), Positives = 78/207 (37%), Gaps = 40/207 (19%)
Query: 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIM---------ACRSLEKAETAADDI 60
R DG+ A+VTG+ G+G+ A A+RGA+V++ S A+ D+I
Sbjct: 13 GKLRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEI 72
Query: 61 RTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR-----Q 115
R + GE V + V + A + + +L+NNAG++ R +
Sbjct: 73 RKA------GGEAVADYNSVIDGAKVIETA---IKAFGRVDILVNNAGIL---RDRSLVK 120
Query: 116 LTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEK 175
+E + L + G + T P + K RII SS S +
Sbjct: 121 TSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSS-------NSGIY------- 166
Query: 176 GYSATGAYGRSKLANILFTTELAKRLQ 202
G Y +K+ I +A
Sbjct: 167 GNFGQVNYTAAKMGLIGLANTVAIEGA 193
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* Length = 287 | Back alignment and structure |
|---|
Score = 71.5 bits (175), Expect = 2e-14
Identities = 24/122 (19%), Positives = 48/122 (39%), Gaps = 16/122 (13%)
Query: 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVK 68
A + GK A+V +G +A LA GA V++ R L+KA+ AAD +
Sbjct: 112 AAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVN------- 164
Query: 69 DAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINN--AGVMMCPRQLTEDGYELQFA 126
+V + + + S + + H + G+ + P+ ++ ++
Sbjct: 165 KRFKVNVTAAETADDASRAEAVKG-------AHFVFTAGAIGLELLPQAAWQNESSIEIV 217
Query: 127 TN 128
+
Sbjct: 218 AD 219
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} Length = 257 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 6e-14
Identities = 35/160 (21%), Positives = 61/160 (38%), Gaps = 27/160 (16%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
+ A+VTG +G+G T L GA+V++ + E D+
Sbjct: 6 EIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDI---RGEDVVADL---------GDR 53
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDG------YELQFA 126
D++ +V A ++ + + +++N AG R L+ DG +
Sbjct: 54 ARFAAADVTDEAAVAS-ALDLAETMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVD 112
Query: 127 TNHLGHYLFTLLLLPRIIKSAPA--------RIINLSSLA 158
N +G + L RI K+ P IIN +S+A
Sbjct: 113 INLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVA 152
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 Length = 242 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 7e-13
Identities = 31/154 (20%), Positives = 68/154 (44%), Gaps = 31/154 (20%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
++A+VTG +G+G+ A L RG RV++ D+R ++ +++
Sbjct: 3 RSALVTGGASGLGRAAALALKARGYRVVVL------------DLR------REGEDLIYV 44
Query: 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDG------YELQFATNHL 130
+ D++ + VR+ + + + +++ AGV + + L ++G + N L
Sbjct: 45 EGDVTREEDVRRAVARAQEE-APLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLL 103
Query: 131 GHYLFTLLLLPRIIKSAPA------RIINLSSLA 158
G + L + ++ P I+N +S+A
Sbjct: 104 GTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVA 137
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 3e-05
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 16 GKTAIVTGSNTGIGKCTANELAK-RGARVIMACRSLEKAETAAD 58
K ++T + + K LAK G R I+ R E+ D
Sbjct: 165 EKAFVMTAGASQLCK-LIIGLAKEEGFRPIVTVRRDEQIALLKD 207
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 1e-04
Identities = 27/135 (20%), Positives = 48/135 (35%), Gaps = 32/135 (23%)
Query: 61 RTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIH-LLIN--NAGVMMCPRQLT 117
+ SL + K E I + L+ K +NE A+H +++ N L
Sbjct: 413 KYSLVE-KQPKESTISIPSIY-LELKVKL-----ENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 118 ---EDGYELQFATNHLGHYL-----------FTLLLLP-RIIKSAPARIINLSSLAHTWG 162
D Y H+GH+L F ++ L R ++ +I + S+ + G
Sbjct: 466 PPYLDQYFYS----HIGHHLKNIEHPERMTLFRMVFLDFRFLE---QKIRHDSTAWNASG 518
Query: 163 DGSMHFEDINLEKGY 177
+ + K Y
Sbjct: 519 SILNTLQQLKFYKPY 533
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 16 GKTAIVTGSNTGIGKCTANELAK-RGARVIMACRSLEKAETAADDIR 61
G + I SN+G+G+ ++A G R I R + +D ++
Sbjct: 168 GDSVIQNASNSGVGQ-AVIQIAAALGLRTINVVRDRPDIQKLSDRLK 213
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 2e-04
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 7/61 (11%)
Query: 16 GKTAIVTGSNTGIGKCTANELAK-RGARVIMACRSLEKAETA----ADD-IRTSLKDVKD 69
+V + IG +L++ R+I R+ + E A I TS + +
Sbjct: 145 NDVLLVNACGSAIGH-LFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYE 203
Query: 70 A 70
Sbjct: 204 T 204
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 330 | |||
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 100.0 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 100.0 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 100.0 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 100.0 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 100.0 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 100.0 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 100.0 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 100.0 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 100.0 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 100.0 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 100.0 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 100.0 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 100.0 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 100.0 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 100.0 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 100.0 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 100.0 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 100.0 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 100.0 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 100.0 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 100.0 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 100.0 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 100.0 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 100.0 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 100.0 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 100.0 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 100.0 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 100.0 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 100.0 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 100.0 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 100.0 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 100.0 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 100.0 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 100.0 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 100.0 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 100.0 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 100.0 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 100.0 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 100.0 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 100.0 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 100.0 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 100.0 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 100.0 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 100.0 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 100.0 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 100.0 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 100.0 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 100.0 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 100.0 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 100.0 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 100.0 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 100.0 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 100.0 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 100.0 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 100.0 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 100.0 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 100.0 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 100.0 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 100.0 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 100.0 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 100.0 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 100.0 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 100.0 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 100.0 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 100.0 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 100.0 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 100.0 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 100.0 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 100.0 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 100.0 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 100.0 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 100.0 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 100.0 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 100.0 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 100.0 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 100.0 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 100.0 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 100.0 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 100.0 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 100.0 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 100.0 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 100.0 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 100.0 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 100.0 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 100.0 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 100.0 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 100.0 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 100.0 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 100.0 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 100.0 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 100.0 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 100.0 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 100.0 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 100.0 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 100.0 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 100.0 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 100.0 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 100.0 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 100.0 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 100.0 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 100.0 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 100.0 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 100.0 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 100.0 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 100.0 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 100.0 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 100.0 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 100.0 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 100.0 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 100.0 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 100.0 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 100.0 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 100.0 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 100.0 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 100.0 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 100.0 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 100.0 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 100.0 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 100.0 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 100.0 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 100.0 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 100.0 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 100.0 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 100.0 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 100.0 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 100.0 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 100.0 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 100.0 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 100.0 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 100.0 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 100.0 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 100.0 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 100.0 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 100.0 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 100.0 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 100.0 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 100.0 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 100.0 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 100.0 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 100.0 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 100.0 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 100.0 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 100.0 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 100.0 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 100.0 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 100.0 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 100.0 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 100.0 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 100.0 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 100.0 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 100.0 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 100.0 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 100.0 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 100.0 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 100.0 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 100.0 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 100.0 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 100.0 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 100.0 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 100.0 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 100.0 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 100.0 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 100.0 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 100.0 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 100.0 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 100.0 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 100.0 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 100.0 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 100.0 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 100.0 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 100.0 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 100.0 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 100.0 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 100.0 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 100.0 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 100.0 | |
| 3lt0_A | 329 | Enoyl-ACP reductase; triclosan, triclosan variant, | 100.0 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 100.0 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 100.0 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 100.0 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 100.0 | |
| 3zu3_A | 405 | Putative reductase YPO4104/Y4119/YP_4011; oxidored | 100.0 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 100.0 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 100.0 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 100.0 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 100.0 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 100.0 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 100.0 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 100.0 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 100.0 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 100.0 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 100.0 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 100.0 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 100.0 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 100.0 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 100.0 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 100.0 | |
| 2ptg_A | 319 | Enoyl-acyl carrier reductase; apicomplexa, enoyl ( | 100.0 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 100.0 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 100.0 | |
| 2o2s_A | 315 | Enoyl-acyl carrier reductase; enoyl reductase, tri | 100.0 | |
| 1d7o_A | 297 | Enoyl-[acyl-carrier protein] reductase (NADH) PRE; | 100.0 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 100.0 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 100.0 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 100.0 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 100.0 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 100.0 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 100.0 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 100.0 | |
| 4eue_A | 418 | Putative reductase CA_C0462; TER, biofuel, synthet | 100.0 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 100.0 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 100.0 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 99.97 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 99.97 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 99.97 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 99.97 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 99.96 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 99.96 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 99.96 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 99.95 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 99.94 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 99.93 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 99.92 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 99.92 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 99.91 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 99.91 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 99.91 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 99.89 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 99.89 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 99.88 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 99.88 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 99.88 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 99.87 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 99.87 | |
| 4ggo_A | 401 | Trans-2-enoyl-COA reductase; rossmann fold, oxidor | 99.87 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 99.86 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 99.86 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 99.86 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 99.86 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 99.86 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 99.85 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 99.85 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 99.85 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 99.85 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 99.85 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 99.84 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 99.84 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 99.84 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 99.84 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 99.84 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 99.84 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 99.84 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 99.84 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 99.84 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 99.83 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 99.83 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 99.83 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 99.83 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 99.82 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 99.82 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 99.82 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 99.82 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 99.82 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 99.81 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 99.81 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 99.81 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 99.81 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 99.81 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 99.81 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 99.81 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 99.8 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 99.8 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 99.8 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 99.8 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 99.79 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 99.79 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 99.79 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 99.79 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 99.78 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 99.78 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 99.77 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 99.77 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 99.77 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 99.76 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 99.76 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 99.76 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 99.75 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 99.75 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 99.74 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 99.74 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 99.73 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 99.73 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 99.72 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 99.72 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 99.71 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 99.69 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 99.68 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 99.66 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 99.66 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 99.65 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 99.63 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 99.62 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 99.61 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 99.6 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 99.59 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 99.59 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 99.56 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 99.51 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 99.5 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 99.49 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 99.48 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 99.48 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 99.47 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 99.46 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 99.23 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 99.18 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 98.96 | |
| 1u7z_A | 226 | Coenzyme A biosynthesis bifunctional protein coabc | 98.85 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.65 | |
| 2gk4_A | 232 | Conserved hypothetical protein; alpha-beta-alpha s | 98.59 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 98.56 | |
| 3gxh_A | 157 | Putative phosphatase (DUF442); YP_001181608.1, str | 98.45 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 98.38 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 98.38 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 98.31 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 98.3 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 98.25 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 98.24 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 98.2 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 98.19 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.18 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 98.17 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.12 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 98.1 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 98.08 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 98.08 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 98.07 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 98.02 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 98.01 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 98.0 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 97.98 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.94 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 97.93 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 97.92 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 97.91 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 97.87 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 97.84 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 97.82 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 97.78 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 97.75 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 97.75 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 97.73 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.72 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 97.64 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 97.63 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 97.63 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 97.62 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 97.62 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 97.6 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 97.57 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 97.52 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 97.49 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 97.46 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 97.45 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 97.45 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 97.43 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 97.41 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.41 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 97.4 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 97.39 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 97.36 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 97.31 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 97.31 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 97.28 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 97.25 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 97.2 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 97.2 | |
| 1p9o_A | 313 | Phosphopantothenoylcysteine synthetase; ligase; 2. | 97.16 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 97.14 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 97.14 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.11 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.0 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 96.99 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 96.95 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 96.92 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 96.86 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 96.84 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 96.84 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 96.83 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 96.8 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 96.76 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 96.74 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 96.73 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 96.73 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 96.71 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 96.68 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 96.64 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 96.64 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 96.63 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 96.6 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 96.58 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 96.58 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 96.58 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 96.57 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 96.55 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 96.54 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 96.53 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 96.53 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 96.46 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 96.44 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 96.44 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 96.44 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 96.43 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 96.4 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 96.38 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 96.37 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 96.34 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 96.33 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 96.31 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 96.3 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 96.29 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 96.27 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 96.26 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 96.26 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 96.23 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 96.21 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 96.2 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 96.19 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 96.17 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 96.1 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 96.08 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 96.07 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 96.05 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 96.04 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 96.04 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 96.03 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 95.98 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 95.97 | |
| 3iup_A | 379 | Putative NADPH:quinone oxidoreductase; YP_296108.1 | 95.94 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 95.91 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 95.89 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 95.86 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 95.84 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 95.81 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 95.79 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 95.79 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 95.76 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 95.75 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 95.72 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 95.72 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 95.69 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 95.67 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 95.67 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 95.63 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 95.58 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 95.47 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 95.45 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 95.44 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 95.4 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 95.35 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 95.34 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 95.31 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 95.25 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 95.22 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 95.21 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 95.09 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 95.08 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 95.07 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 95.07 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 95.07 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 95.06 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 95.04 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 95.03 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 94.97 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 94.91 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 94.83 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 94.82 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 94.81 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 94.79 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 94.77 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 94.76 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 94.76 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 94.71 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 94.67 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 94.62 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 94.57 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 94.55 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 94.54 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 94.54 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 94.53 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 94.48 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 94.43 | |
| 1tt5_B | 434 | Ubiquitin-activating enzyme E1C isoform 1; cell cy | 94.43 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 94.42 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 94.4 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 94.4 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 94.3 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 94.28 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 94.21 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 94.19 |
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-50 Score=371.53 Aligned_cols=239 Identities=23% Similarity=0.276 Sum_probs=213.5
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
++|+||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++++ .+.++.++.+|++++++++++++
T Consensus 3 ~sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~------~g~~~~~~~~Dvt~~~~v~~~~~ 76 (254)
T 4fn4_A 3 QSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRG------MGKEVLGVKADVSKKKDVEEFVR 76 (254)
T ss_dssp GGGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH------TTCCEEEEECCTTSHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh------cCCcEEEEEccCCCHHHHHHHHH
Confidence 369999999999999999999999999999999999999999999999976 37789999999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCC---CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 92 EILDNESAIHLLINNAGVMMC---PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~---~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
++.+.+|+||+||||||+... ..+++.++|++++++|+.++|+++|+++|+|+++++|+||++||.++..+.
T Consensus 77 ~~~~~~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~~g~~~~----- 151 (254)
T 4fn4_A 77 RTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGIRGG----- 151 (254)
T ss_dssp HHHHHHSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCSS-----
T ss_pred HHHHHcCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEechhhcCCC-----
Confidence 999999999999999997642 378899999999999999999999999999999999999999999998885
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
+...+|++||+|+.+|+|+||.|++
T Consensus 152 ---------~~~~~Y~asKaal~~ltr~lA~ela---------------------------------------------- 176 (254)
T 4fn4_A 152 ---------FAGAPYTVAKHGLIGLTRSIAAHYG---------------------------------------------- 176 (254)
T ss_dssp ---------SSCHHHHHHHHHHHHHHHHHHHHHG----------------------------------------------
T ss_pred ---------CCChHHHHHHHHHHHHHHHHHHHhh----------------------------------------------
Confidence 7788999999999999999999999
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCchhh-HHHH---HHhhhhhccChHHHHHHHHHhhccccccccCceecc
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGT-AWLY---QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYA 324 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~ 324 (330)
+ .|||||+|+||+|+|++........+.. +... .+++| +++|+|+|++++||+++ .++|+||+.|.
T Consensus 177 ----~---~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~R--~g~pediA~~v~fLaSd-~a~~iTG~~i~ 246 (254)
T 4fn4_A 177 ----D---QGIRAVAVLPGTVKTNIGLGSSKPSELGMRTLTKLMSLSSR--LAEPEDIANVIVFLASD-EASFVNGDAVV 246 (254)
T ss_dssp ----G---GTEEEEEEEECSBCSSCTTSCSSCCHHHHHHHHHHHTTCCC--CBCHHHHHHHHHHHHSG-GGTTCCSCEEE
T ss_pred ----h---hCeEEEEEEeCCCCCcccccccCCcHHHHHHHHhcCCCCCC--CcCHHHHHHHHHHHhCc-hhcCCcCCEEE
Confidence 6 8999999999999999976655433222 1121 23455 89999999999999966 68899999986
Q ss_pred cC
Q psy13409 325 KA 326 (330)
Q Consensus 325 ~~ 326 (330)
-.
T Consensus 247 VD 248 (254)
T 4fn4_A 247 VD 248 (254)
T ss_dssp ES
T ss_pred eC
Confidence 54
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-50 Score=372.45 Aligned_cols=242 Identities=22% Similarity=0.266 Sum_probs=217.4
Q ss_pred cCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHH
Q psy13409 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRK 88 (330)
Q Consensus 9 ~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~ 88 (330)
+.+++|+||++|||||++|||+++|+.|+++|++|++++|+.+.+++..+++.+. +.++.++.||+++++++++
T Consensus 2 s~~f~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~------g~~~~~~~~Dv~~~~~v~~ 75 (255)
T 4g81_D 2 TALFDLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRK------GYDAHGVAFDVTDELAIEA 75 (255)
T ss_dssp -CTTCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHT------TCCEEECCCCTTCHHHHHH
T ss_pred CCCcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEeeCCCHHHHHH
Confidence 4456899999999999999999999999999999999999999999999998773 6789999999999999999
Q ss_pred HHHHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhh-CCCeEEEEcCCCcccCCCC
Q psy13409 89 CAQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKS-APARIINLSSLAHTWGDGS 165 (330)
Q Consensus 89 l~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~-~~g~IV~iSS~~~~~~~~~ 165 (330)
+++++.+.+|++|+||||||+.... .+.+.++|++++++|+.|+|+++|+++|+|.++ ++|+||++||.++..+.
T Consensus 76 ~~~~~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~~~-- 153 (255)
T 4g81_D 76 AFSKLDAEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQAAR-- 153 (255)
T ss_dssp HHHHHHHTTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSBC--
T ss_pred HHHHHHHHCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcCCC--
Confidence 9999999999999999999987643 789999999999999999999999999999765 56999999999988775
Q ss_pred CcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccc
Q psy13409 166 MHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCK 245 (330)
Q Consensus 166 ~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (330)
+...+|++||+|+.+|+|+||.|++
T Consensus 154 ------------~~~~~Y~asKaal~~ltr~lA~ela------------------------------------------- 178 (255)
T 4g81_D 154 ------------PTVAPYTAAKGGIKMLTCSMAAEWA------------------------------------------- 178 (255)
T ss_dssp ------------TTCHHHHHHHHHHHHHHHHHHHHHG-------------------------------------------
T ss_pred ------------CCchhHHHHHHHHHHHHHHHHHHhc-------------------------------------------
Confidence 7889999999999999999999999
Q ss_pred ccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCceec
Q psy13409 246 NVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYY 323 (330)
Q Consensus 246 ~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~ 323 (330)
+ .|||||+|+||+|+|++.......+...++.. .|++| +++|+|+|++++||+++ .++|+||+.|
T Consensus 179 -------~---~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~Pl~R--~g~pediA~~v~fL~S~-~a~~iTG~~i 245 (255)
T 4g81_D 179 -------Q---FNIQTNAIGPGYILTDMNTALIEDKQFDSWVKSSTPSQR--WGRPEELIGTAIFLSSK-ASDYINGQII 245 (255)
T ss_dssp -------G---GTEEEEEEEECSBCCGGGHHHHTCHHHHHHHHHHSTTCS--CBCGGGGHHHHHHHHSG-GGTTCCSCEE
T ss_pred -------c---cCeEEEEEeeCCCCCchhhcccCCHHHHHHHHhCCCCCC--CcCHHHHHHHHHHHhCc-hhCCCcCCEE
Confidence 6 89999999999999999887666555555554 35565 99999999999999966 6789999998
Q ss_pred ccC
Q psy13409 324 AKA 326 (330)
Q Consensus 324 ~~~ 326 (330)
.-.
T Consensus 246 ~VD 248 (255)
T 4g81_D 246 YVD 248 (255)
T ss_dssp EES
T ss_pred EEC
Confidence 654
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-48 Score=359.26 Aligned_cols=235 Identities=24% Similarity=0.293 Sum_probs=201.1
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
.+|+||++|||||++|||+++|+.|+++|++|++++|+.+.+++..+++ +.++..+.+|++|+++++++++
T Consensus 25 ~rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~---------g~~~~~~~~Dv~~~~~v~~~~~ 95 (273)
T 4fgs_A 25 QRLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI---------GGGAVGIQADSANLAELDRLYE 95 (273)
T ss_dssp CTTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---------CTTCEEEECCTTCHHHHHHHHH
T ss_pred chhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc---------CCCeEEEEecCCCHHHHHHHHH
Confidence 4699999999999999999999999999999999999999888877665 4567889999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 92 EILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
++.+.+|+||+||||||.... ..+.+.++|++.+++|+.++|+++|+++|+|.+ +|+||++||.++..+.
T Consensus 96 ~~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~--~G~IInisS~~~~~~~------ 167 (273)
T 4fgs_A 96 KVKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLAR--GSSVVLTGSTAGSTGT------ 167 (273)
T ss_dssp HHHHHHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEE--EEEEEEECCGGGGSCC------
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhh--CCeEEEEeehhhccCC------
Confidence 999999999999999998653 378999999999999999999999999999965 5899999999998885
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
+...+|++||+|+.+|+|+||.|++
T Consensus 168 --------~~~~~Y~asKaav~~ltr~lA~Ela----------------------------------------------- 192 (273)
T 4fgs_A 168 --------PAFSVYAASKAALRSFARNWILDLK----------------------------------------------- 192 (273)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHTT-----------------------------------------------
T ss_pred --------CCchHHHHHHHHHHHHHHHHHHHhc-----------------------------------------------
Confidence 7889999999999999999999999
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCchh-----hHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCcee
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPG-----TAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLY 322 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~-----~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~ 322 (330)
+ .|||||+|+||+|+|++..+.....+. .+.+. .|++| +++|+|+|++++||+++ .++|+||+.
T Consensus 193 ---~---~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~PlgR--~g~peeiA~~v~FLaSd-~a~~iTG~~ 263 (273)
T 4fgs_A 193 ---D---RGIRINTLSPGPTETTGLVELAGKDPVQQQGLLNALAAQVPMGR--VGRAEEVAAAALFLASD-DSSFVTGAE 263 (273)
T ss_dssp ---T---SCEEEEEEEECSBCC---------CHHHHHHHHHHHHHHSTTSS--CBCHHHHHHHHHHHHSG-GGTTCCSCE
T ss_pred ---c---cCeEEEEEeeCCCCChhHHHhhccCchhhHHHHHHHHhcCCCCC--CcCHHHHHHHHHHHhCc-hhcCccCCe
Confidence 6 899999999999999988766543221 11222 35566 99999999999999966 678999999
Q ss_pred cccCC
Q psy13409 323 YAKAD 327 (330)
Q Consensus 323 ~~~~~ 327 (330)
|.-.+
T Consensus 264 i~VDG 268 (273)
T 4fgs_A 264 LFVDG 268 (273)
T ss_dssp EEEST
T ss_pred EeECc
Confidence 87543
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-48 Score=352.27 Aligned_cols=226 Identities=21% Similarity=0.286 Sum_probs=195.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
++||++|||||++|||+++++.|+++|++|++++|+.+.+++. ...++..+.+|++|+++++++++
T Consensus 9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~------------~~~~~~~~~~Dv~~~~~v~~~~~-- 74 (242)
T 4b79_A 9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAP------------RHPRIRREELDITDSQRLQRLFE-- 74 (242)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTSC------------CCTTEEEEECCTTCHHHHHHHHH--
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhhh------------hcCCeEEEEecCCCHHHHHHHHH--
Confidence 6999999999999999999999999999999999998754321 35688999999999999888765
Q ss_pred HhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccccc
Q psy13409 94 LDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINL 173 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~ 173 (330)
.+|++|+||||||+..+..+.+.++|++.+++|+.++|+++|.++|+|.++ +|+||++||..+..+.
T Consensus 75 --~~g~iDiLVNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~-~G~IVnisS~~~~~~~---------- 141 (242)
T 4b79_A 75 --ALPRLDVLVNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQR-GGSILNIASMYSTFGS---------- 141 (242)
T ss_dssp --HCSCCSEEEECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-CEEEEEECCGGGTSCC----------
T ss_pred --hcCCCCEEEECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCeEEEEeeccccCCC----------
Confidence 579999999999998777889999999999999999999999999999765 5999999999998885
Q ss_pred ccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCC
Q psy13409 174 EKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPG 253 (330)
Q Consensus 174 ~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (330)
+...+|++||+|+++|+|+||.|++ +
T Consensus 142 ----~~~~~Y~asKaav~~ltr~lA~Ela--------------------------------------------------~ 167 (242)
T 4b79_A 142 ----ADRPAYSASKGAIVQLTRSLACEYA--------------------------------------------------A 167 (242)
T ss_dssp ----SSCHHHHHHHHHHHHHHHHHHHHHG--------------------------------------------------G
T ss_pred ----CCCHHHHHHHHHHHHHHHHHHHHhh--------------------------------------------------h
Confidence 7889999999999999999999999 6
Q ss_pred CCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 254 ANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 254 ~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
.|||||+|+||+|+||+........+..+... .|++| +++|+|+|++++||+++ .++|+||+.|.-.
T Consensus 168 ---~gIrVNaV~PG~i~T~m~~~~~~~~~~~~~~~~~~PlgR--~g~peeiA~~v~fLaSd-~a~~iTG~~l~VD 236 (242)
T 4b79_A 168 ---ERIRVNAIAPGWIDTPLGAGLKADVEATRRIMQRTPLAR--WGEAPEVASAAAFLCGP-GASFVTGAVLAVD 236 (242)
T ss_dssp ---GTEEEEEEEECSBCCC-----CCCHHHHHHHHHTCTTCS--CBCHHHHHHHHHHHTSG-GGTTCCSCEEEES
T ss_pred ---cCeEEEEEEeCCCCChhhhcccCCHHHHHHHHhcCCCCC--CcCHHHHHHHHHHHhCc-hhcCccCceEEEC
Confidence 89999999999999999887766554444444 35565 99999999999999966 6889999998654
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-48 Score=354.46 Aligned_cols=240 Identities=23% Similarity=0.272 Sum_probs=202.8
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
|+++|+||++|||||++|||+++|+.|+++|++|++++|+.+..+. .+++.+. +.++.++.||++++++++++
T Consensus 1 M~~~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~-~~~~~~~------~~~~~~~~~Dv~~~~~v~~~ 73 (258)
T 4gkb_A 1 MDLNLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAF-LDALAQR------QPRATYLPVELQDDAQCRDA 73 (258)
T ss_dssp CCCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHH-HHHHHHH------CTTCEEEECCTTCHHHHHHH
T ss_pred CCCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHH-HHHHHhc------CCCEEEEEeecCCHHHHHHH
Confidence 4678999999999999999999999999999999999999876543 3444443 56789999999999999999
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCCC-CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 90 AQEILDNESAIHLLINNAGVMMCP-RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~~-~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
++++.+.+|++|+||||||+.... .+.+.++|++.+++|+.++|+++|+++|+|+++ +|+||++||.++..+.
T Consensus 74 v~~~~~~~G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~-~G~IVnisS~~~~~~~----- 147 (258)
T 4gkb_A 74 VAQTIATFGRLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKAT-RGAIVNISSKTAVTGQ----- 147 (258)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECCTHHHHCC-----
T ss_pred HHHHHHHhCCCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCeEEEEeehhhccCC-----
Confidence 999999999999999999986533 578899999999999999999999999999765 5999999999998885
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
+...+|++||+|+.+|+|++|.|++
T Consensus 148 ---------~~~~~Y~asKaav~~ltr~lA~ela---------------------------------------------- 172 (258)
T 4gkb_A 148 ---------GNTSGYCASKGAQLALTREWAVALR---------------------------------------------- 172 (258)
T ss_dssp ---------SSCHHHHHHHHHHHHHHHHHHHHHG----------------------------------------------
T ss_pred ---------CCchHHHHHHHHHHHHHHHHHHHhc----------------------------------------------
Confidence 7889999999999999999999999
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCc----hhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCcee
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSII----PGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLY 322 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~ 322 (330)
+ .|||||+|+||+|+|++.+...... ...+... .|+++ ++++|+|+|++++||+++ .++|+||+.
T Consensus 173 ----~---~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~plg~-R~g~peeiA~~v~fLaS~-~a~~iTG~~ 243 (258)
T 4gkb_A 173 ----E---HGVRVNAVIPAEVMTPLYRNWIATFEDPEAKLAEIAAKVPLGR-RFTTPDEIADTAVFLLSP-RASHTTGEW 243 (258)
T ss_dssp ----G---GTCEEEEEEECSBCCSCC-----------CHHHHHHTTCTTTT-SCBCHHHHHHHHHHHHSG-GGTTCCSCE
T ss_pred ----c---cCeEEEEEecCCCCChhHhhhhhcccChHHHHHHHHhcCCCCC-CCcCHHHHHHHHHHHhCc-hhcCccCCe
Confidence 6 8999999999999999987654321 1122222 24432 389999999999999966 678999999
Q ss_pred cccC
Q psy13409 323 YAKA 326 (330)
Q Consensus 323 ~~~~ 326 (330)
|.-.
T Consensus 244 i~VD 247 (258)
T 4gkb_A 244 LFVD 247 (258)
T ss_dssp EEES
T ss_pred EEEC
Confidence 8654
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-48 Score=354.07 Aligned_cols=233 Identities=21% Similarity=0.310 Sum_probs=202.6
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
..+|+||++|||||++|||+++|+.|+++|++|++++|+.. ++..+.+++ .+.++.++.||++|++++++++
T Consensus 4 ~f~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~--~~~~~~~~~------~g~~~~~~~~Dv~d~~~v~~~~ 75 (247)
T 4hp8_A 4 PFSLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAP--DETLDIIAK------DGGNASALLIDFADPLAAKDSF 75 (247)
T ss_dssp TTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCC--HHHHHHHHH------TTCCEEEEECCTTSTTTTTTSS
T ss_pred CcCCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHHHH------hCCcEEEEEccCCCHHHHHHHH
Confidence 45899999999999999999999999999999999999864 345556655 3778999999999999887765
Q ss_pred HHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCCc
Q psy13409 91 QEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~~ 167 (330)
+ ++++|+||||||+... ..+++.++|++.+++|+.|+|+++|+++|+|.+++ +|+||++||..+..+.
T Consensus 76 ~-----~g~iDiLVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~g~---- 146 (247)
T 4hp8_A 76 T-----DAGFDILVNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQGG---- 146 (247)
T ss_dssp T-----TTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC----
T ss_pred H-----hCCCCEEEECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCCCC----
Confidence 3 5899999999998754 37889999999999999999999999999998875 6999999999998885
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
+...+|++||+|+.+|+|+||.||+
T Consensus 147 ----------~~~~~Y~asKaav~~ltr~lA~Ela--------------------------------------------- 171 (247)
T 4hp8_A 147 ----------IRVPSYTAAKHGVAGLTKLLANEWA--------------------------------------------- 171 (247)
T ss_dssp ----------SSCHHHHHHHHHHHHHHHHHHHHHG---------------------------------------------
T ss_pred ----------CCChHHHHHHHHHHHHHHHHHHHHh---------------------------------------------
Confidence 7888999999999999999999999
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCceeccc
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAK 325 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~ 325 (330)
+ .|||||+|+||+|+|++.+.........+... .|++| +++|+|+|++++||+++ .++|+||+.|.-
T Consensus 172 -----~---~gIrVNaV~PG~i~T~~~~~~~~~~~~~~~~~~~~PlgR--~g~peeiA~~v~fLaSd-~a~~iTG~~i~V 240 (247)
T 4hp8_A 172 -----A---KGINVNAIAPGYIETNNTEALRADAARNKAILERIPAGR--WGHSEDIAGAAVFLSSA-AADYVHGAILNV 240 (247)
T ss_dssp -----G---GTEEEEEEEECSBCSGGGHHHHTSHHHHHHHHTTCTTSS--CBCTHHHHHHHHHHTSG-GGTTCCSCEEEE
T ss_pred -----h---cCeEEEEEeeCCCCCcchhhcccCHHHHHHHHhCCCCCC--CcCHHHHHHHHHHHhCc-hhcCCcCCeEEE
Confidence 6 89999999999999999887655544444443 35565 99999999999999966 688999999865
Q ss_pred C
Q psy13409 326 A 326 (330)
Q Consensus 326 ~ 326 (330)
.
T Consensus 241 D 241 (247)
T 4hp8_A 241 D 241 (247)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-46 Score=342.47 Aligned_cols=239 Identities=15% Similarity=0.106 Sum_probs=209.2
Q ss_pred CCCCCCCEEEEEcCCC--chHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNT--GIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRK 88 (330)
Q Consensus 11 ~~~~~gk~aLITGas~--gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~ 88 (330)
|++|+||++|||||+| |||+++|+.|+++|++|++++|+.+.++++.+.+++. .+.++.++.||+++++++++
T Consensus 1 M~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~~~~~v~~ 75 (256)
T 4fs3_A 1 MLNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQL-----NQPEAHLYQIDVQSDEEVIN 75 (256)
T ss_dssp CCCCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGG-----TCSSCEEEECCTTCHHHHHH
T ss_pred CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-----CCCcEEEEEccCCCHHHHHH
Confidence 5689999999999765 9999999999999999999999999888888877664 35688999999999999999
Q ss_pred HHHHHHhcCCCeeEEEEcCCCCCC------CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccC
Q psy13409 89 CAQEILDNESAIHLLINNAGVMMC------PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWG 162 (330)
Q Consensus 89 l~~~i~~~~g~iDvlInnAG~~~~------~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~ 162 (330)
+++++.+.+|++|+||||||+... ..+.+.++|+..+++|+++++.+++.+.+++.+ +|+||++||.++..+
T Consensus 76 ~~~~~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~--~G~IVnisS~~~~~~ 153 (256)
T 4fs3_A 76 GFEQIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPE--GGSIVATTYLGGEFA 153 (256)
T ss_dssp HHHHHHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTT--CEEEEEEECGGGTSC
T ss_pred HHHHHHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCEEEEEeccccccC
Confidence 999999999999999999997642 256788999999999999999999999887643 699999999999888
Q ss_pred CCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcc
Q psy13409 163 DGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNH 242 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (330)
. +....|++||+|+++|+|+||.|++
T Consensus 154 ~--------------~~~~~Y~asKaal~~ltr~lA~Ela---------------------------------------- 179 (256)
T 4fs3_A 154 V--------------QNYNVMGVAKASLEANVKYLALDLG---------------------------------------- 179 (256)
T ss_dssp C--------------TTTHHHHHHHHHHHHHHHHHHHHHG----------------------------------------
T ss_pred c--------------ccchhhHHHHHHHHHHHHHHHHHhC----------------------------------------
Confidence 5 7889999999999999999999999
Q ss_pred cccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCc
Q psy13409 243 YCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETG 320 (330)
Q Consensus 243 ~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G 320 (330)
+ .|||||+|+||+|+|++.+.....+...+... .|++| +.+|+|+|++++||+++ .++|+||
T Consensus 180 ----------~---~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~Pl~R--~g~peevA~~v~fL~Sd-~a~~iTG 243 (256)
T 4fs3_A 180 ----------P---DNIRVNAISAGPIRTLSAKGVGGFNTILKEIKERAPLKR--NVDQVEVGKTAAYLLSD-LSSGVTG 243 (256)
T ss_dssp ----------G---GTEEEEEEEECCCCSGGGTTCTTHHHHHHHHHHHSTTSS--CCCHHHHHHHHHHHHSG-GGTTCCS
T ss_pred ----------c---cCeEEEEEecCCCCChhhhhccCCHHHHHHHHhcCCCCC--CcCHHHHHHHHHHHhCc-hhcCccC
Confidence 6 89999999999999999887765444444443 35565 99999999999999966 6789999
Q ss_pred eecccC
Q psy13409 321 LYYAKA 326 (330)
Q Consensus 321 ~~~~~~ 326 (330)
+.|.-.
T Consensus 244 ~~i~VD 249 (256)
T 4fs3_A 244 ENIHVD 249 (256)
T ss_dssp CEEEES
T ss_pred CEEEEC
Confidence 998643
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=338.03 Aligned_cols=223 Identities=20% Similarity=0.251 Sum_probs=194.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
+|+||||||++|||+++|+.|+++|++|++++|+.+.++++.+ ...++.++.||++|+++++++++++.+
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~----------~~~~~~~~~~Dv~~~~~v~~~v~~~~~ 71 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAK----------ERPNLFYFHGDVADPLTLKKFVEYAME 71 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHT----------TCTTEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----------hcCCEEEEEecCCCHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999877655432 245788999999999999999999999
Q ss_pred cCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccccc
Q psy13409 96 NESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINL 173 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~ 173 (330)
.+|++|+||||||+.... .+++.++|++++++|+.++|+++|.++|+|.++ +|+||++||..+..+.
T Consensus 72 ~~g~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~-~G~IInisS~~~~~~~---------- 140 (247)
T 3ged_A 72 KLQRIDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKN-KGRIINIASTRAFQSE---------- 140 (247)
T ss_dssp HHSCCCEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEECCGGGTSCC----------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhc-CCcEEEEeecccccCC----------
Confidence 999999999999987543 788999999999999999999999999999875 5999999999998885
Q ss_pred ccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCC
Q psy13409 174 EKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPG 253 (330)
Q Consensus 174 ~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (330)
+...+|++||+|+.+|+|+||.|++
T Consensus 141 ----~~~~~Y~asKaal~~ltk~lA~ela--------------------------------------------------- 165 (247)
T 3ged_A 141 ----PDSEAYASAKGGIVALTHALAMSLG--------------------------------------------------- 165 (247)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHHT---------------------------------------------------
T ss_pred ----CCCHHHHHHHHHHHHHHHHHHHHHC---------------------------------------------------
Confidence 7889999999999999999999998
Q ss_pred CCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 254 ANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 254 ~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+|||||+|+||+|+|++..+.... .....|++| +++|+|+|++++||+++ +|+||+.|.-.
T Consensus 166 ---~~IrVN~I~PG~i~t~~~~~~~~~----~~~~~Pl~R--~g~pediA~~v~fL~s~---~~iTG~~i~VD 226 (247)
T 3ged_A 166 ---PDVLVNCIAPGWINVTEQQEFTQE----DCAAIPAGK--VGTPKDISNMVLFLCQQ---DFITGETIIVD 226 (247)
T ss_dssp ---TTSEEEEEEECSBCCCC---CCHH----HHHTSTTSS--CBCHHHHHHHHHHHHHC---SSCCSCEEEES
T ss_pred ---CCCEEEEEecCcCCCCCcHHHHHH----HHhcCCCCC--CcCHHHHHHHHHHHHhC---CCCCCCeEEEC
Confidence 689999999999999987654321 111246666 99999999999999963 59999998654
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-46 Score=344.80 Aligned_cols=235 Identities=19% Similarity=0.286 Sum_probs=198.4
Q ss_pred ccCC-CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHH
Q psy13409 8 CTAD-TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSV 86 (330)
Q Consensus 8 ~~~~-~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si 86 (330)
|+++ ++|+||++|||||++|||+++|+.|+++|++|++++|+... ...+..++++|+++++++
T Consensus 2 Mm~dl~~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~----------------~~~~~~~~~~Dv~~~~~v 65 (261)
T 4h15_A 2 MMIEFLNLRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPE----------------GLPEELFVEADLTTKEGC 65 (261)
T ss_dssp CCCCCCCCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCT----------------TSCTTTEEECCTTSHHHH
T ss_pred cchhccCCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchh----------------CCCcEEEEEcCCCCHHHH
Confidence 4445 48999999999999999999999999999999999998542 112334789999999999
Q ss_pred HHHHHHHHhcCCCeeEEEEcCCCCCC----CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccC
Q psy13409 87 RKCAQEILDNESAIHLLINNAGVMMC----PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWG 162 (330)
Q Consensus 87 ~~l~~~i~~~~g~iDvlInnAG~~~~----~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~ 162 (330)
+++++++.+.+|++|+||||||+... ..+.+.++|++.+++|+.++++++|.++|+|++++.|+||++||..+..+
T Consensus 66 ~~~~~~~~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Iv~isS~~~~~~ 145 (261)
T 4h15_A 66 AIVAEATRQRLGGVDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGSGVVVHVTSIQRVLP 145 (261)
T ss_dssp HHHHHHHHHHTSSCSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCCceEEEEEehhhccC
Confidence 99999999999999999999997542 36889999999999999999999999999999999999999999998877
Q ss_pred CCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcc
Q psy13409 163 DGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNH 242 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (330)
. +.....|++||+|+++|+++||.|++
T Consensus 146 ~-------------~~~~~~Y~asKaal~~lt~~lA~Ela---------------------------------------- 172 (261)
T 4h15_A 146 L-------------PESTTAYAAAKAALSTYSKAMSKEVS---------------------------------------- 172 (261)
T ss_dssp C-------------TTTCHHHHHHHHHHHHHHHHHHHHHG----------------------------------------
T ss_pred C-------------CCccHHHHHHHHHHHHHHHHHHHHhh----------------------------------------
Confidence 4 13578999999999999999999999
Q ss_pred cccccccCCCCCCCCceeEEEeeCcccccCcccccCC--------Cchh-hHHHH-----HHhhhhhccChHHHHHHHHH
Q psy13409 243 YCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDS--------IIPG-TAWLY-----QRVGGLFIKSPLQGAQTTLY 308 (330)
Q Consensus 243 ~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~--------~~~~-~~~~~-----~~~~~~~~~~~~e~a~~~~~ 308 (330)
+ .|||||+|+||+|+|++...... .... .+... .|++| +++|||+|++++|
T Consensus 173 ----------~---~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlgR--~g~peevA~~v~f 237 (261)
T 4h15_A 173 ----------P---KGVRVVRVSPGWIETEASVRLAERLAKQAGTDLEGGKKIIMDGLGGIPLGR--PAKPEEVANLIAF 237 (261)
T ss_dssp ----------G---GTEEEEEEEECCBCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCTTSS--CBCHHHHHHHHHH
T ss_pred ----------h---hCeEEEEEeCCCcCCcchhhhhHHHHHhhccchhhHHHHHHHHhcCCCCCC--CcCHHHHHHHHHH
Confidence 6 89999999999999998654321 1111 11111 35566 8999999999999
Q ss_pred hhccccccccCceecccCC
Q psy13409 309 CALDKKCERETGLYYAKAD 327 (330)
Q Consensus 309 l~~~~~~~~~~G~~~~~~~ 327 (330)
|+++ .++|+||+.|.-.+
T Consensus 238 LaS~-~a~~itG~~i~VDG 255 (261)
T 4h15_A 238 LASD-RAASITGAEYTIDG 255 (261)
T ss_dssp HHSG-GGTTCCSCEEEEST
T ss_pred HhCc-hhcCccCcEEEECC
Confidence 9965 67899999986543
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-43 Score=323.38 Aligned_cols=244 Identities=20% Similarity=0.220 Sum_probs=210.3
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
..++++||++|||||++|||++++++|+++|++|++++|+.+++++..+++.... .+.++.++.+|++|+++++++
T Consensus 2 ~~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~~Dv~~~~~v~~~ 77 (265)
T 3lf2_A 2 KPYDLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRF----PGARLFASVCDVLDALQVRAF 77 (265)
T ss_dssp -CCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHS----TTCCEEEEECCTTCHHHHHHH
T ss_pred CccCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc----CCceEEEEeCCCCCHHHHHHH
Confidence 3467999999999999999999999999999999999999999998888887642 344699999999999999999
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCc
Q psy13409 90 AQEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~ 167 (330)
++++.+.++++|+||||||.... ..+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||..+..+.
T Consensus 78 ~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---- 153 (265)
T 3lf2_A 78 AEACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQPE---- 153 (265)
T ss_dssp HHHHHHHHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEGGGTSCC----
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECCcccCCCC----
Confidence 99999999999999999998653 367899999999999999999999999999998888999999999988775
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
+....|++||+|+++|++++|.|++
T Consensus 154 ----------~~~~~Y~asKaa~~~l~~~la~e~~--------------------------------------------- 178 (265)
T 3lf2_A 154 ----------PHMVATSAARAGVKNLVRSMAFEFA--------------------------------------------- 178 (265)
T ss_dssp ----------TTBHHHHHHHHHHHHHHHHHHHHHG---------------------------------------------
T ss_pred ----------CCchhhHHHHHHHHHHHHHHHHHhc---------------------------------------------
Confidence 7789999999999999999999999
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCCCc--------hhhHHHH----HHhhhhhccChHHHHHHHHHhhccccc
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSII--------PGTAWLY----QRVGGLFIKSPLQGAQTTLYCALDKKC 315 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~--------~~~~~~~----~~~~~~~~~~~~e~a~~~~~l~~~~~~ 315 (330)
+ .||+||+|+||+|+|++.+...... ...+... .++++ +.+|+|+|++++||+++ .+
T Consensus 179 -----~---~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r--~~~pedvA~~v~fL~s~-~~ 247 (265)
T 3lf2_A 179 -----P---KGVRVNGILIGLVESGQWRRRFEAREERELDWAQWTAQLARNKQIPLGR--LGKPIEAARAILFLASP-LS 247 (265)
T ss_dssp -----G---GTEEEEEEEECSBCCHHHHHHHTC------CHHHHHHHHHHHTTCTTCS--CBCHHHHHHHHHHHHSG-GG
T ss_pred -----c---cCeEEEEEEeCcCcCchhhhhhhhhhhhccCHHHHHHHHhhccCCCcCC--CcCHHHHHHHHHHHhCc-hh
Confidence 5 7999999999999999876543211 1111111 23444 88999999999999965 67
Q ss_pred cccCceecccCC
Q psy13409 316 ERETGLYYAKAD 327 (330)
Q Consensus 316 ~~~~G~~~~~~~ 327 (330)
+++||+.|...+
T Consensus 248 ~~itG~~i~vdG 259 (265)
T 3lf2_A 248 AYTTGSHIDVSG 259 (265)
T ss_dssp TTCCSEEEEESS
T ss_pred cCcCCCEEEECC
Confidence 899999987654
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-43 Score=322.65 Aligned_cols=239 Identities=25% Similarity=0.353 Sum_probs=207.0
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
.+++++||++|||||++|||++++++|+++|++|++++|+.+.+++..+++. .++.++.+|++|+++++++
T Consensus 3 ~~~~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~Dv~d~~~v~~~ 73 (248)
T 3op4_A 3 QFMNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLG---------DNGKGMALNVTNPESIEAV 73 (248)
T ss_dssp CTTCCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG---------GGEEEEECCTTCHHHHHHH
T ss_pred cccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc---------ccceEEEEeCCCHHHHHHH
Confidence 4567999999999999999999999999999999999999988887776653 3467899999999999999
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCc
Q psy13409 90 AQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~ 167 (330)
++++.+.++++|++|||||+.... .+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||..+..+.
T Consensus 74 ~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~---- 149 (248)
T 3op4_A 74 LKAITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGN---- 149 (248)
T ss_dssp HHHHHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC----
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcCCC----
Confidence 999999999999999999987543 67899999999999999999999999999998888999999999888775
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
++...|++||+|+++|++++|.|++
T Consensus 150 ----------~~~~~Y~asK~a~~~l~~~la~e~~--------------------------------------------- 174 (248)
T 3op4_A 150 ----------AGQANYAAAKAGVIGFTKSMAREVA--------------------------------------------- 174 (248)
T ss_dssp ----------TTCHHHHHHHHHHHHHHHHHHHHHG---------------------------------------------
T ss_pred ----------CCChHHHHHHHHHHHHHHHHHHHHH---------------------------------------------
Confidence 7889999999999999999999998
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
+ .||+||+|+||+|+|++.+.... .............++.+|+|+|++++||+++ .++++||+.|...+
T Consensus 175 -----~---~gi~vn~v~PG~v~T~~~~~~~~--~~~~~~~~~~p~~r~~~p~dva~~v~~L~s~-~~~~itG~~i~vdg 243 (248)
T 3op4_A 175 -----S---RGVTVNTVAPGFIETDMTKALND--EQRTATLAQVPAGRLGDPREIASAVAFLASP-EAAYITGETLHVNG 243 (248)
T ss_dssp -----G---GTEEEEEEEECSBSSTTTTTSCH--HHHHHHHHTCTTCSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEEST
T ss_pred -----H---hCeEEEEEeeCCCCCchhhhcCH--HHHHHHHhcCCCCCCcCHHHHHHHHHHHcCC-ccCCccCcEEEECC
Confidence 5 79999999999999999876532 1122222222233389999999999999965 56899999987654
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-43 Score=325.11 Aligned_cols=247 Identities=22% Similarity=0.252 Sum_probs=213.1
Q ss_pred ccCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHH
Q psy13409 8 CTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVR 87 (330)
Q Consensus 8 ~~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~ 87 (330)
...+++++||++|||||++|||++++++|+++|++|++++|+.+++++..+++.+.. +.++.++.+|++|+++++
T Consensus 12 ~~~~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~Dv~~~~~v~ 86 (266)
T 4egf_A 12 YAGVLRLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQF-----GTDVHTVAIDLAEPDAPA 86 (266)
T ss_dssp BCGGGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-----CCCEEEEECCTTSTTHHH
T ss_pred cccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-----CCcEEEEEecCCCHHHHH
Confidence 344567999999999999999999999999999999999999999998888887642 568999999999999999
Q ss_pred HHHHHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCC
Q psy13409 88 KCAQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDG 164 (330)
Q Consensus 88 ~l~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~ 164 (330)
++++++.+.++++|+||||||..... .+.+.++|++.+++|+.+++++++.++|.|.+++ .|+||++||..+..+.
T Consensus 87 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~- 165 (266)
T 4egf_A 87 ELARRAAEAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALAPL- 165 (266)
T ss_dssp HHHHHHHHHHTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC-
T ss_pred HHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhccCC-
Confidence 99999999999999999999987543 6788999999999999999999999999998876 6899999999887774
Q ss_pred CCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccc
Q psy13409 165 SMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYC 244 (330)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
+....|++||+|+++|++++|.|++
T Consensus 166 -------------~~~~~Y~asK~a~~~l~~~la~e~~------------------------------------------ 190 (266)
T 4egf_A 166 -------------PDHYAYCTSKAGLVMATKVLARELG------------------------------------------ 190 (266)
T ss_dssp -------------TTCHHHHHHHHHHHHHHHHHHHHHG------------------------------------------
T ss_pred -------------CCChHHHHHHHHHHHHHHHHHHHHh------------------------------------------
Confidence 7788999999999999999999998
Q ss_pred cccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecc
Q psy13409 245 KNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYA 324 (330)
Q Consensus 245 ~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~ 324 (330)
+ .||+||+|+||+|+|++.+...................++.+|+|+|++++||+++ .++++||+.|.
T Consensus 191 --------~---~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dva~~v~~L~s~-~~~~itG~~i~ 258 (266)
T 4egf_A 191 --------P---HGIRANSVCPTVVLTEMGQRVWGDEAKSAPMIARIPLGRFAVPHEVSDAVVWLASD-AASMINGVDIP 258 (266)
T ss_dssp --------G---GTEEEEEEEESCBCSHHHHHHTCSHHHHHHHHTTCTTSSCBCHHHHHHHHHHHHSG-GGTTCCSCEEE
T ss_pred --------h---hCeEEEEEEeCCCcCchhhhhccChHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCc-hhcCccCcEEE
Confidence 5 79999999999999998776543333333333222233389999999999999966 56899999987
Q ss_pred cCC
Q psy13409 325 KAD 327 (330)
Q Consensus 325 ~~~ 327 (330)
..+
T Consensus 259 vdG 261 (266)
T 4egf_A 259 VDG 261 (266)
T ss_dssp EST
T ss_pred ECC
Confidence 543
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-43 Score=322.37 Aligned_cols=243 Identities=24% Similarity=0.265 Sum_probs=210.2
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
.|++++||++|||||++|||++++++|+++|++|++++|+.+++++..+++++. ...++.++.+|++++++++++
T Consensus 4 ~m~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~~Dv~~~~~v~~~ 78 (262)
T 3pk0_A 4 SMFDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQL-----GSGKVIGVQTDVSDRAQCDAL 78 (262)
T ss_dssp CTTCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT-----SSSCEEEEECCTTSHHHHHHH
T ss_pred CccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhh-----CCCcEEEEEcCCCCHHHHHHH
Confidence 456799999999999999999999999999999999999999998888888653 236899999999999999999
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcc-cCCCCC
Q psy13409 90 AQEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHT-WGDGSM 166 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~-~~~~~~ 166 (330)
++++.+.++++|+||||||.... ..+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||..+. .+.
T Consensus 79 ~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~--- 155 (262)
T 3pk0_A 79 AGRAVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSITGPITGY--- 155 (262)
T ss_dssp HHHHHHHHSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCEEEEECCSBTTTBCC---
T ss_pred HHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhccCCC---
Confidence 99999999999999999998753 367899999999999999999999999999999888999999998875 443
Q ss_pred cccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccc
Q psy13409 167 HFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKN 246 (330)
Q Consensus 167 ~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (330)
++...|++||+|+++|++++|.|++
T Consensus 156 -----------~~~~~Y~asK~a~~~l~~~la~e~~-------------------------------------------- 180 (262)
T 3pk0_A 156 -----------PGWSHYGATKAAQLGFMRTAAIELA-------------------------------------------- 180 (262)
T ss_dssp -----------TTCHHHHHHHHHHHHHHHHHHHHHG--------------------------------------------
T ss_pred -----------CCChhhHHHHHHHHHHHHHHHHHHH--------------------------------------------
Confidence 6788999999999999999999999
Q ss_pred cccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 247 VLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 247 ~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+ .||+||+|+||+|+|++..... ....+.........++.+|+|+|++++||+++ .++++||+.|...
T Consensus 181 ------~---~gi~vn~v~PG~v~t~~~~~~~--~~~~~~~~~~~p~~r~~~p~dva~~v~~L~s~-~~~~itG~~i~vd 248 (262)
T 3pk0_A 181 ------P---HKITVNAIMPGNIMTEGLLENG--EEYIASMARSIPAGALGTPEDIGHLAAFLATK-EAGYITGQAIAVD 248 (262)
T ss_dssp ------G---GTCEEEEEEECSBCCHHHHTTC--HHHHHHHHTTSTTSSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEES
T ss_pred ------h---hCcEEEEEEeCcCcCccccccC--HHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCc-cccCCcCCEEEEC
Confidence 5 7999999999999999876532 12222233222333389999999999999966 5689999998754
Q ss_pred C
Q psy13409 327 D 327 (330)
Q Consensus 327 ~ 327 (330)
+
T Consensus 249 G 249 (262)
T 3pk0_A 249 G 249 (262)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-43 Score=326.52 Aligned_cols=249 Identities=24% Similarity=0.316 Sum_probs=210.3
Q ss_pred cccCcccCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCC
Q psy13409 3 LFSGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSS 82 (330)
Q Consensus 3 ~~~~~~~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~ 82 (330)
.-+++..++.+++||++|||||++|||++++++|+++|++|++++|+.+.++++.+++... +.++.++.+|++|
T Consensus 15 ~~~gp~~m~~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dv~d 88 (270)
T 3ftp_A 15 QTQGPGSMDKTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQA------GLEGRGAVLNVND 88 (270)
T ss_dssp --------CCTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH------TCCCEEEECCTTC
T ss_pred CCCCCcccccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEEeCCC
Confidence 3456666677899999999999999999999999999999999999999998888888763 5678899999999
Q ss_pred HHHHHHHHHHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcc
Q psy13409 83 LKSVRKCAQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHT 160 (330)
Q Consensus 83 ~~si~~l~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~ 160 (330)
+++++++++++.+.++++|+||||||+.... .+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||..+.
T Consensus 89 ~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~ 168 (270)
T 3ftp_A 89 ATAVDALVESTLKEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGRIVNITSVVGS 168 (270)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhC
Confidence 9999999999999999999999999987543 67889999999999999999999999999998888999999999887
Q ss_pred cCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCC
Q psy13409 161 WGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPT 240 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (330)
.+. ++...|++||+|+++|+++++.|++
T Consensus 169 ~~~--------------~~~~~Y~asKaa~~~l~~~la~e~~-------------------------------------- 196 (270)
T 3ftp_A 169 AGN--------------PGQVNYAAAKAGVAGMTRALAREIG-------------------------------------- 196 (270)
T ss_dssp HCC--------------TTBHHHHHHHHHHHHHHHHHHHHHG--------------------------------------
T ss_pred CCC--------------CCchhHHHHHHHHHHHHHHHHHHHh--------------------------------------
Confidence 774 7789999999999999999999998
Q ss_pred cccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCc
Q psy13409 241 NHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETG 320 (330)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G 320 (330)
+ .||+||+|+||+|+|++.+..... ............++.+|+|+|++++||+++ .++++||
T Consensus 197 ------------~---~gI~vn~v~PG~v~T~~~~~~~~~--~~~~~~~~~p~~r~~~pedvA~~v~~L~s~-~~~~itG 258 (270)
T 3ftp_A 197 ------------S---RGITVNCVAPGFIDTDMTKGLPQE--QQTALKTQIPLGRLGSPEDIAHAVAFLASP-QAGYITG 258 (270)
T ss_dssp ------------G---GTEEEEEEEECSBCSHHHHHSCHH--HHHHHHTTCTTCSCBCHHHHHHHHHHHHSG-GGTTCCS
T ss_pred ------------h---hCeEEEEEEeCCCcCcchhhcCHH--HHHHHHhcCCCCCCCCHHHHHHHHHHHhCC-CcCCccC
Confidence 5 799999999999999988764321 122222222223388999999999999965 5679999
Q ss_pred eecccCC
Q psy13409 321 LYYAKAD 327 (330)
Q Consensus 321 ~~~~~~~ 327 (330)
+.|...+
T Consensus 259 ~~i~vdG 265 (270)
T 3ftp_A 259 TTLHVNG 265 (270)
T ss_dssp CEEEEST
T ss_pred cEEEECC
Confidence 9987654
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-43 Score=324.30 Aligned_cols=242 Identities=19% Similarity=0.294 Sum_probs=212.8
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
++|+||++|||||++|||++++++|+++|++|++++|+.+++++..+++.. .+.++.++.+|++|+++++++++
T Consensus 22 ~~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~------~~~~~~~~~~Dv~d~~~v~~~~~ 95 (271)
T 4ibo_A 22 FDLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRN------VGHDAEAVAFDVTSESEIIEAFA 95 (271)
T ss_dssp GCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHH------TTCCEEECCCCTTCHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh------cCCceEEEEcCCCCHHHHHHHHH
Confidence 578999999999999999999999999999999999999999998888876 36789999999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 92 EILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
++.+.++++|+||||||+.... .+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||..+..+.
T Consensus 96 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iV~isS~~~~~~~------ 169 (271)
T 4ibo_A 96 RLDEQGIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYGKIVNIGSLTSELAR------ 169 (271)
T ss_dssp HHHHHTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSBC------
T ss_pred HHHHHCCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCCCC------
Confidence 9999999999999999987533 67899999999999999999999999999999888999999999887774
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
++...|++||+|+++|++++|.|++
T Consensus 170 --------~~~~~Y~asKaa~~~l~~~la~e~~----------------------------------------------- 194 (271)
T 4ibo_A 170 --------ATVAPYTVAKGGIKMLTRAMAAEWA----------------------------------------------- 194 (271)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHHG-----------------------------------------------
T ss_pred --------CCchhHHHHHHHHHHHHHHHHHHHh-----------------------------------------------
Confidence 6788999999999999999999999
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
+ .||+||+|+||+|+|++.+.........++........++.+|+|+|++++||+++ .++++||+.|...+
T Consensus 195 ---~---~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedva~~v~~L~s~-~~~~itG~~i~vdG 265 (271)
T 4ibo_A 195 ---Q---YGIQANAIGPGYMLTDMNQALIDNPEFDAWVKARTPAKRWGKPQELVGTAVFLSAS-ASDYVNGQIIYVDG 265 (271)
T ss_dssp ---G---GTEEEEEEEECSBCSGGGHHHHHCHHHHHHHHHHSTTCSCBCGGGGHHHHHHHHSG-GGTTCCSCEEEEST
T ss_pred ---h---hCeEEEEEEeccEeCcchhhcccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCc-cccCCCCcEEEECC
Confidence 5 79999999999999999876543333334443333333489999999999999966 56799999987544
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-43 Score=319.09 Aligned_cols=241 Identities=23% Similarity=0.294 Sum_probs=211.1
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
++++++||++|||||++|||++++++|+++|++|++++|+.+.+++..+++.. .+.++.++.+|++|+++++++
T Consensus 6 ~~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~------~~~~~~~~~~Dv~d~~~v~~~ 79 (256)
T 3gaf_A 6 SPFHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQ------AGGKAIGLECNVTDEQHREAV 79 (256)
T ss_dssp CTTCCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHH------TTCCEEEEECCTTCHHHHHHH
T ss_pred CCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh------cCCcEEEEECCCCCHHHHHHH
Confidence 45679999999999999999999999999999999999999999988888876 367899999999999999999
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCCC-CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 90 AQEILDNESAIHLLINNAGVMMCP-RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~~-~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
++++.+.++++|+||||||..... .+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||..+..+.
T Consensus 80 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~----- 154 (256)
T 3gaf_A 80 IKAALDQFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGENTN----- 154 (256)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTCCC-----
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHHcCCC-----
Confidence 999999999999999999987543 37789999999999999999999999999998888999999999987774
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
++...|++||+|+++|+++++.|++
T Consensus 155 ---------~~~~~Y~asKaa~~~~~~~la~e~~---------------------------------------------- 179 (256)
T 3gaf_A 155 ---------VRMASYGSSKAAVNHLTRNIAFDVG---------------------------------------------- 179 (256)
T ss_dssp ---------TTCHHHHHHHHHHHHHHHHHHHHHG----------------------------------------------
T ss_pred ---------CCchHHHHHHHHHHHHHHHHHHHHh----------------------------------------------
Confidence 6788999999999999999999998
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+ .||+||+|+||+|+|++....... ....... .++++ +.+|+|+|++++||+++ .++++||+.|...
T Consensus 180 ----~---~gi~vn~v~PG~v~T~~~~~~~~~-~~~~~~~~~~p~~r--~~~~~dva~~~~~L~s~-~~~~itG~~i~vd 248 (256)
T 3gaf_A 180 ----P---MGIRVNAIAPGAIKTDALATVLTP-EIERAMLKHTPLGR--LGEAQDIANAALFLCSP-AAAWISGQVLTVS 248 (256)
T ss_dssp ----G---GTEEEEEEEECCBCCHHHHHHCCH-HHHHHHHTTCTTSS--CBCHHHHHHHHHHHHSG-GGTTCCSCEEEES
T ss_pred ----h---hCcEEEEEEEccccCchhhhccCH-HHHHHHHhcCCCCC--CCCHHHHHHHHHHHcCC-cccCccCCEEEEC
Confidence 5 799999999999999987654322 1222222 23444 89999999999999965 5689999998765
Q ss_pred C
Q psy13409 327 D 327 (330)
Q Consensus 327 ~ 327 (330)
+
T Consensus 249 g 249 (256)
T 3gaf_A 249 G 249 (256)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=322.06 Aligned_cols=248 Identities=18% Similarity=0.194 Sum_probs=210.0
Q ss_pred cCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHH
Q psy13409 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRK 88 (330)
Q Consensus 9 ~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~ 88 (330)
.++++++||++|||||++|||++++++|+++|++|++++|+.+.+++..+++.+... ...++.++.+|++|++++++
T Consensus 4 ~m~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~---~~~~~~~~~~Dv~~~~~v~~ 80 (281)
T 3svt_A 4 SMQLSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGA---NGGAIRYEPTDITNEDETAR 80 (281)
T ss_dssp ----CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCC---SSCEEEEEECCTTSHHHHHH
T ss_pred CCccCcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC---CCceEEEEeCCCCCHHHHHH
Confidence 456679999999999999999999999999999999999999999888888865311 12389999999999999999
Q ss_pred HHHHHHhcCCCeeEEEEcCCCCC---CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCC
Q psy13409 89 CAQEILDNESAIHLLINNAGVMM---CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGS 165 (330)
Q Consensus 89 l~~~i~~~~g~iDvlInnAG~~~---~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~ 165 (330)
+++++.+.++++|+||||||... +..+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||..+..+.
T Consensus 81 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-- 158 (281)
T 3svt_A 81 AVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAASNTH-- 158 (281)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSCC--
T ss_pred HHHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHHcCCC--
Confidence 99999999999999999999743 2367899999999999999999999999999998888999999999887774
Q ss_pred CcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccc
Q psy13409 166 MHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCK 245 (330)
Q Consensus 166 ~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (330)
+...+|++||+|+++|++++|.|++
T Consensus 159 ------------~~~~~Y~asK~a~~~l~~~la~e~~------------------------------------------- 183 (281)
T 3svt_A 159 ------------RWFGAYGVTKSAVDHLMQLAADELG------------------------------------------- 183 (281)
T ss_dssp ------------TTCTHHHHHHHHHHHHHHHHHHHHG-------------------------------------------
T ss_pred ------------CCChhHHHHHHHHHHHHHHHHHHhh-------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred ccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceeccc
Q psy13409 246 NVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAK 325 (330)
Q Consensus 246 ~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~ 325 (330)
+ +||+||+|+||+|+|++.+...................++.+|+|+|++++||+++ .++++||+.|..
T Consensus 184 -------~---~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~~~~l~s~-~~~~itG~~~~v 252 (281)
T 3svt_A 184 -------A---SWVRVNSIRPGLIRTDLVAAITESAELSSDYAMCTPLPRQGEVEDVANMAMFLLSD-AASFVTGQVINV 252 (281)
T ss_dssp -------G---GTEEEEEEEECSBCSGGGHHHHTCHHHHHHHHHHCSSSSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEE
T ss_pred -------h---cCeEEEEEEeCcCcCcchhhcccCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCc-ccCCCCCCEEEe
Confidence 5 79999999999999999876543333333333322223389999999999999976 567999999876
Q ss_pred CC
Q psy13409 326 AD 327 (330)
Q Consensus 326 ~~ 327 (330)
.+
T Consensus 253 dg 254 (281)
T 3svt_A 253 DG 254 (281)
T ss_dssp ST
T ss_pred CC
Confidence 43
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=323.22 Aligned_cols=246 Identities=21% Similarity=0.253 Sum_probs=206.0
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
.++++++|++|||||++|||++++++|+++|++|++++|+.+.+++..+++.. .+.++.++.+|++|+++++++
T Consensus 22 ~m~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~------~~~~~~~~~~Dv~d~~~v~~~ 95 (283)
T 3v8b_A 22 SMMNQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVG------AGGQAIALEADVSDELQMRNA 95 (283)
T ss_dssp -----CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTT------TTCCEEEEECCTTCHHHHHHH
T ss_pred hhcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh------cCCcEEEEEccCCCHHHHHHH
Confidence 34578999999999999999999999999999999999999998888887754 367899999999999999999
Q ss_pred HHHHHhcCCCeeEEEEcCCCCC---CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCC
Q psy13409 90 AQEILDNESAIHLLINNAGVMM---CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSM 166 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~---~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~ 166 (330)
++++.+.++++|+||||||+.. +..+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||.++....
T Consensus 96 ~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~--- 172 (283)
T 3v8b_A 96 VRDLVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRGGGAIVVVSSINGTRTF--- 172 (283)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBC---
T ss_pred HHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCceEEEEcChhhccCC---
Confidence 9999999999999999999853 3468899999999999999999999999999999888999999999886621
Q ss_pred cccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccc
Q psy13409 167 HFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKN 246 (330)
Q Consensus 167 ~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (330)
+.++...|++||+|+++|++++|.|++
T Consensus 173 ---------~~~~~~~Y~asKaa~~~l~~~la~e~~-------------------------------------------- 199 (283)
T 3v8b_A 173 ---------TTPGATAYTATKAAQVAIVQQLALELG-------------------------------------------- 199 (283)
T ss_dssp ---------CSTTCHHHHHHHHHHHHHHHHHHHHTT--------------------------------------------
T ss_pred ---------CCCCchHHHHHHHHHHHHHHHHHHHhC--------------------------------------------
Confidence 126788999999999999999999998
Q ss_pred cccCCCCCCCCceeEEEeeCcccccCcccccCCCchh-----hHHH--HHHhhhhhccChHHHHHHHHHhhccccccccC
Q psy13409 247 VLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPG-----TAWL--YQRVGGLFIKSPLQGAQTTLYCALDKKCERET 319 (330)
Q Consensus 247 ~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~ 319 (330)
+ .||+||+|+||+|+|++.......... .++. ..++...++.+|+|+|++++||+++ .++++|
T Consensus 200 ------~---~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~r~~~pedvA~~v~fL~s~-~a~~it 269 (283)
T 3v8b_A 200 ------K---HHIRVNAVCPGAIETNISDNTKLRHEEETAIPVEWPKGQVPITDGQPGRSEDVAELIRFLVSE-RARHVT 269 (283)
T ss_dssp ------T---TTEEEEEEEECSBSSCTTCCTTBCCHHHHSCCCBCTTCSCGGGTTCCBCHHHHHHHHHHHTSG-GGTTCC
T ss_pred ------c---cCcEEEEEEeCCCcCCcccccccccchhhhhhhhhhhhcCccccCCCCCHHHHHHHHHHHcCc-cccCCc
Confidence 6 799999999999999998754322111 0111 1233113389999999999999966 578999
Q ss_pred ceecccCC
Q psy13409 320 GLYYAKAD 327 (330)
Q Consensus 320 G~~~~~~~ 327 (330)
|+.|...+
T Consensus 270 G~~i~vdG 277 (283)
T 3v8b_A 270 GSPVWIDG 277 (283)
T ss_dssp SCEEEEST
T ss_pred CCEEEECc
Confidence 99987543
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=321.00 Aligned_cols=242 Identities=24% Similarity=0.313 Sum_probs=208.2
Q ss_pred ccCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEec-ChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHH
Q psy13409 8 CTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACR-SLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSV 86 (330)
Q Consensus 8 ~~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R-~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si 86 (330)
.|..++++||++|||||++|||++++++|+++|++|++++| +.+.++++.+++.. .+.++.++.+|++|++++
T Consensus 20 ~m~~~~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~D~~d~~~v 93 (269)
T 4dmm_A 20 HMTALPLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAA------AGGEAFAVKADVSQESEV 93 (269)
T ss_dssp ----CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH------TTCCEEEEECCTTSHHHH
T ss_pred cccccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHh------cCCcEEEEECCCCCHHHH
Confidence 34456799999999999999999999999999999999988 66677777777765 367899999999999999
Q ss_pred HHHHHHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCC
Q psy13409 87 RKCAQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDG 164 (330)
Q Consensus 87 ~~l~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~ 164 (330)
+++++++.+.++++|+||||||..... .+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||.++..+.
T Consensus 94 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~- 172 (269)
T 4dmm_A 94 EALFAAVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIASVVGEMGN- 172 (269)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCHHHHHCC-
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCCC-
Confidence 999999999999999999999987543 57889999999999999999999999999998888999999999888774
Q ss_pred CCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccc
Q psy13409 165 SMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYC 244 (330)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
++...|++||+|+++|++++|.|++
T Consensus 173 -------------~~~~~Y~asK~a~~~l~~~la~e~~------------------------------------------ 197 (269)
T 4dmm_A 173 -------------PGQANYSAAKAGVIGLTKTVAKELA------------------------------------------ 197 (269)
T ss_dssp -------------TTCHHHHHHHHHHHHHHHHHHHHHG------------------------------------------
T ss_pred -------------CCchhHHHHHHHHHHHHHHHHHHHh------------------------------------------
Confidence 6788999999999999999999998
Q ss_pred cccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecc
Q psy13409 245 KNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYA 324 (330)
Q Consensus 245 ~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~ 324 (330)
+ .||+||+|+||+|+|++...... +.........++.+|+|+|++++||++++.++++||+.|.
T Consensus 198 --------~---~gi~vn~v~PG~v~T~~~~~~~~-----~~~~~~~p~~r~~~~~dvA~~v~~l~s~~~~~~itG~~i~ 261 (269)
T 4dmm_A 198 --------S---RGITVNAVAPGFIATDMTSELAA-----EKLLEVIPLGRYGEAAEVAGVVRFLAADPAAAYITGQVIN 261 (269)
T ss_dssp --------G---GTCEEEEEEECCBTTSCSCHHHH-----HHHGGGCTTSSCBCHHHHHHHHHHHHHCGGGGGCCSCEEE
T ss_pred --------h---hCcEEEEEEECCCcCcccccccH-----HHHHhcCCCCCCCCHHHHHHHHHHHhCCcccCCCcCCEEE
Confidence 5 79999999999999998765321 2222222223389999999999999988778899999987
Q ss_pred cCC
Q psy13409 325 KAD 327 (330)
Q Consensus 325 ~~~ 327 (330)
..+
T Consensus 262 vdG 264 (269)
T 4dmm_A 262 IDG 264 (269)
T ss_dssp EST
T ss_pred ECC
Confidence 543
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-42 Score=317.16 Aligned_cols=243 Identities=18% Similarity=0.180 Sum_probs=207.5
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
++..|+||++|||||++|||++++++|+++|++|++++|+.++++++.+++... +.++.++.+|++|+++++++
T Consensus 5 m~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~ 78 (264)
T 3ucx_A 5 MGGLLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDT------GRRALSVGTDITDDAQVAHL 78 (264)
T ss_dssp --CTTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHH
T ss_pred cCCCcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEcCCCCHHHHHHH
Confidence 445689999999999999999999999999999999999999999988888763 67899999999999999999
Q ss_pred HHHHHhcCCCeeEEEEcCCCCC---CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCC
Q psy13409 90 AQEILDNESAIHLLINNAGVMM---CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSM 166 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~---~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~ 166 (330)
++++.+.++++|+||||||... +..+.+.++|++.+++|+.+++++++.++|.|.+++ |+||++||..+..+.
T Consensus 79 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~--- 154 (264)
T 3ucx_A 79 VDETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESK-GAVVNVNSMVVRHSQ--- 154 (264)
T ss_dssp HHHHHHHTSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHT-CEEEEECCGGGGCCC---
T ss_pred HHHHHHHcCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEEEEECcchhccCC---
Confidence 9999999999999999998853 236789999999999999999999999999998775 999999999887774
Q ss_pred cccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccc
Q psy13409 167 HFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKN 246 (330)
Q Consensus 167 ~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (330)
+....|++||+|+++|++++|.|++
T Consensus 155 -----------~~~~~Y~asKaa~~~~~~~la~e~~-------------------------------------------- 179 (264)
T 3ucx_A 155 -----------AKYGAYKMAKSALLAMSQTLATELG-------------------------------------------- 179 (264)
T ss_dssp -----------TTCHHHHHHHHHHHHHHHHHHHHHH--------------------------------------------
T ss_pred -----------CccHHHHHHHHHHHHHHHHHHHHhC--------------------------------------------
Confidence 7788999999999999999999999
Q ss_pred cccCCCCCCCCceeEEEeeCcccccCcccccCCC---------chhhHHHHHHhhhhhccChHHHHHHHHHhhccccccc
Q psy13409 247 VLFHPPGANITNVNTYAVHPGVVDTELSRHFDSI---------IPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCER 317 (330)
Q Consensus 247 ~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~ 317 (330)
+ .||+||+|+||+|+|++.+..... ....+.........++.+|+|+|++++||+++ .+++
T Consensus 180 ------~---~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~L~s~-~~~~ 249 (264)
T 3ucx_A 180 ------E---KGIRVNSVLPGYIWGGTLKSYFEHQAGKYGTSVEDIYNAAAAGSDLKRLPTEDEVASAILFMASD-LASG 249 (264)
T ss_dssp ------T---TTCEEEEEEESSCBSHHHHHHHHHHHHHTTCCHHHHHHHHHTTSSSSSCCBHHHHHHHHHHHHSG-GGTT
T ss_pred ------c---cCeEEEEEecCccccccHHHHHHhhhhhcCCCHHHHHHHHhccCCcccCCCHHHHHHHHHHHcCc-cccC
Confidence 6 899999999999999987654211 11111122222223388999999999999966 5689
Q ss_pred cCceecccCC
Q psy13409 318 ETGLYYAKAD 327 (330)
Q Consensus 318 ~~G~~~~~~~ 327 (330)
+||+.|...+
T Consensus 250 itG~~i~vdG 259 (264)
T 3ucx_A 250 ITGQALDVNC 259 (264)
T ss_dssp CCSCEEEEST
T ss_pred CCCCEEEECC
Confidence 9999987654
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-42 Score=316.23 Aligned_cols=240 Identities=21% Similarity=0.201 Sum_probs=208.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEE-ecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMA-CRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~-~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
.+||++|||||++|||++++++|+++|++|+++ +|+.+.+++..+++.. .+.++.++.+|++|++++++++++
T Consensus 2 ~~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~------~~~~~~~~~~Dv~~~~~v~~~~~~ 75 (258)
T 3oid_A 2 EQNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEK------LGVKVLVVKANVGQPAKIKEMFQQ 75 (258)
T ss_dssp -CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHT------TTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh------cCCcEEEEEcCCCCHHHHHHHHHH
Confidence 368999999999999999999999999999987 8999888888888765 367899999999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 93 ILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
+.+.++++|+||||||.... ..+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||..+..+.
T Consensus 76 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~------- 148 (258)
T 3oid_A 76 IDETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIRYL------- 148 (258)
T ss_dssp HHHHHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEEEGGGTSBC-------
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhCCCC-------
Confidence 99999999999999997643 367899999999999999999999999999999888999999999887664
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
++...|++||+|+++|++++|.|++
T Consensus 149 -------~~~~~Y~asKaa~~~l~~~la~e~~------------------------------------------------ 173 (258)
T 3oid_A 149 -------ENYTTVGVSKAALEALTRYLAVELS------------------------------------------------ 173 (258)
T ss_dssp -------TTCHHHHHHHHHHHHHHHHHHHHTG------------------------------------------------
T ss_pred -------CCcHHHHHHHHHHHHHHHHHHHHHh------------------------------------------------
Confidence 7789999999999999999999998
Q ss_pred CCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 251 PPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 251 ~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
+ .||+||+|+||+|+|++.+.........+.........++.+|+|+|++++||+++ .++++||+.|...+
T Consensus 174 --~---~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~v~~L~s~-~~~~itG~~i~vdG 244 (258)
T 3oid_A 174 --P---KQIIVNAVSGGAIDTDALKHFPNREDLLEDARQNTPAGRMVEIKDMVDTVEFLVSS-KADMIRGQTIIVDG 244 (258)
T ss_dssp --G---GTEEEEEEEECCBCSGGGGGCTTHHHHHHHHHHHCTTSSCBCHHHHHHHHHHHTSS-TTTTCCSCEEEEST
T ss_pred --h---cCcEEEEEeeCCCcChhhhhcccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCc-ccCCccCCEEEECC
Confidence 5 79999999999999999887654333333333333333489999999999999976 56799999987644
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=315.87 Aligned_cols=236 Identities=28% Similarity=0.321 Sum_probs=205.4
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
.+++||++|||||++|||++++++|+++|++|++++|+.+++++..+++ +.++.++.+|++|+++++++++
T Consensus 2 ~~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~Dv~~~~~v~~~~~ 72 (247)
T 3rwb_A 2 ERLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI---------GKKARAIAADISDPGSVKALFA 72 (247)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH---------CTTEEECCCCTTCHHHHHHHHH
T ss_pred CCcCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---------CCceEEEEcCCCCHHHHHHHHH
Confidence 4689999999999999999999999999999999999998887776654 4578899999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCCcc
Q psy13409 92 EILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~~~ 168 (330)
++.+.++++|+||||||..... .+.+.++|++.+++|+.+++++++.++|+|.+++ .|+||++||..+..+.
T Consensus 73 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----- 147 (247)
T 3rwb_A 73 EIQALTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFAGT----- 147 (247)
T ss_dssp HHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHTC-----
T ss_pred HHHHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhccCC-----
Confidence 9999999999999999987543 5789999999999999999999999999998876 6999999999887774
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
++...|++||+|+++|++++|.|++
T Consensus 148 ---------~~~~~Y~asKaa~~~~~~~la~e~~---------------------------------------------- 172 (247)
T 3rwb_A 148 ---------PNMAAYVAAKGGVIGFTRALATELG---------------------------------------------- 172 (247)
T ss_dssp ---------TTCHHHHHHHHHHHHHHHHHHHHHG----------------------------------------------
T ss_pred ---------CCchhhHHHHHHHHHHHHHHHHHhh----------------------------------------------
Confidence 7789999999999999999999999
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+ .||+||+|+||+|+|++......... ..... .++++ +.+|+|+|++++||+++ .++++||+.|...
T Consensus 173 ----~---~gi~vn~v~PG~v~t~~~~~~~~~~~-~~~~~~~~~~~r--~~~pedva~~v~~L~s~-~~~~itG~~i~vd 241 (247)
T 3rwb_A 173 ----K---YNITANAVTPGLIESDGVKASPHNEA-FGFVEMLQAMKG--KGQPEHIADVVSFLASD-DARWITGQTLNVD 241 (247)
T ss_dssp ----G---GTEEEEEEEECSBCCHHHHTSGGGGG-HHHHHHHSSSCS--CBCHHHHHHHHHHHHSG-GGTTCCSCEEEES
T ss_pred ----h---cCeEEEEEeeCcCcCccccccChhHH-HHHHhcccccCC--CcCHHHHHHHHHHHhCc-cccCCCCCEEEEC
Confidence 5 79999999999999998776433221 11111 34444 88999999999999966 5689999998754
Q ss_pred C
Q psy13409 327 D 327 (330)
Q Consensus 327 ~ 327 (330)
+
T Consensus 242 G 242 (247)
T 3rwb_A 242 A 242 (247)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-42 Score=319.18 Aligned_cols=243 Identities=24% Similarity=0.251 Sum_probs=207.7
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
|.+++||++|||||++|||++++++|+++|++|++++|+.++++++.+++.. .+.++.++.+|+++++++++++
T Consensus 3 m~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~------~~~~~~~~~~Dv~~~~~v~~~~ 76 (280)
T 3tox_A 3 MSRLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAG------GGGEAAALAGDVGDEALHEALV 76 (280)
T ss_dssp -CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTT------TTCCEEECCCCTTCHHHHHHHH
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh------cCCcEEEEECCCCCHHHHHHHH
Confidence 4568999999999999999999999999999999999999998888877754 3678999999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCC---CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcc-cCCCCC
Q psy13409 91 QEILDNESAIHLLINNAGVMM---CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHT-WGDGSM 166 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~---~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~-~~~~~~ 166 (330)
+++.+.++++|+||||||+.. +..+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||..+. .+.
T Consensus 77 ~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~--- 153 (280)
T 3tox_A 77 ELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTAGF--- 153 (280)
T ss_dssp HHHHHHHSCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCSBTTTBCC---
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhCcCCC---
Confidence 999999999999999999763 2367899999999999999999999999999999888999999998876 443
Q ss_pred cccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccc
Q psy13409 167 HFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKN 246 (330)
Q Consensus 167 ~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (330)
++...|++||+|+++|++++|.|++
T Consensus 154 -----------~~~~~Y~asKaa~~~l~~~la~e~~-------------------------------------------- 178 (280)
T 3tox_A 154 -----------AGVAPYAASKAGLIGLVQALAVELG-------------------------------------------- 178 (280)
T ss_dssp -----------TTCHHHHHHHHHHHHHHHHHHHHHH--------------------------------------------
T ss_pred -----------CCchhHHHHHHHHHHHHHHHHHHhh--------------------------------------------
Confidence 6788999999999999999999999
Q ss_pred cccCCCCCCCCceeEEEeeCcccccCcccccC-C-CchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecc
Q psy13409 247 VLFHPPGANITNVNTYAVHPGVVDTELSRHFD-S-IIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYA 324 (330)
Q Consensus 247 ~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~ 324 (330)
+ .||+||+|+||+|+|++..... . ...............++.+|+|+|++++||+++ .++++||+.|.
T Consensus 179 ------~---~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~-~a~~itG~~i~ 248 (280)
T 3tox_A 179 ------A---RGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGLHALKRIARPEEIAEAALYLASD-GASFVTGAALL 248 (280)
T ss_dssp ------T---TTEEEEEEEECSBSSTTSGGGSTTCCTHHHHHHHTTSTTSSCBCHHHHHHHHHHHHSG-GGTTCCSCEEE
T ss_pred ------h---cCeEEEEEEECCCCCchhhhhccccCHHHHHHHhccCccCCCcCHHHHHHHHHHHhCc-cccCCcCcEEE
Confidence 6 7999999999999999876522 1 122222222222223389999999999999966 56799999987
Q ss_pred cCC
Q psy13409 325 KAD 327 (330)
Q Consensus 325 ~~~ 327 (330)
..+
T Consensus 249 vdG 251 (280)
T 3tox_A 249 ADG 251 (280)
T ss_dssp EST
T ss_pred ECC
Confidence 543
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-42 Score=318.69 Aligned_cols=244 Identities=21% Similarity=0.252 Sum_probs=204.3
Q ss_pred cCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEec-------------ChhHHHHHHHHHHHhhcccCCCCeEEE
Q psy13409 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACR-------------SLEKAETAADDIRTSLKDVKDAGEVVI 75 (330)
Q Consensus 9 ~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R-------------~~~~l~~~~~~l~~~~~~~~~~~~v~~ 75 (330)
.++.+++||++|||||++|||++++++|+++|++|++++| +.+.+++..+.+.. .+.++.+
T Consensus 4 ~m~~~l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 77 (277)
T 3tsc_A 4 SMAGKLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEA------ANRRIVA 77 (277)
T ss_dssp ---CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHH------TTCCEEE
T ss_pred ccccccCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHh------cCCeEEE
Confidence 4456799999999999999999999999999999999998 66777777777665 3678999
Q ss_pred EEccCCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEE
Q psy13409 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARII 152 (330)
Q Consensus 76 i~~Dls~~~si~~l~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV 152 (330)
+.+|++|+++++++++++.+.++++|+||||||+.... .+.+.++|++.+++|+.+++++++.++|.|.+++ .|+||
T Consensus 78 ~~~D~~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv 157 (277)
T 3tsc_A 78 AVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSII 157 (277)
T ss_dssp EECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred EECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 99999999999999999999999999999999987643 5789999999999999999999999999998876 68999
Q ss_pred EEcCCCcccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhh
Q psy13409 153 NLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLC 232 (330)
Q Consensus 153 ~iSS~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (330)
++||..+..+. +....|++||+|+++|+++|+.|++
T Consensus 158 ~isS~~~~~~~--------------~~~~~Y~asKaa~~~~~~~la~e~~------------------------------ 193 (277)
T 3tsc_A 158 LISSAAGMKMQ--------------PFMIHYTASKHAVTGLARAFAAELG------------------------------ 193 (277)
T ss_dssp EECCGGGTSCC--------------SSCHHHHHHHHHHHHHHHHHHHHHG------------------------------
T ss_pred EEccHhhCCCC--------------CCchhhHHHHHHHHHHHHHHHHHhC------------------------------
Confidence 99999987774 6788999999999999999999998
Q ss_pred cccCCCCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCC---------CchhhHHHHHHhhhhhccChHHHH
Q psy13409 233 DANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDS---------IIPGTAWLYQRVGGLFIKSPLQGA 303 (330)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~e~a 303 (330)
+ .||+||+|+||+|+|++.+.... .............. ++.+|+|+|
T Consensus 194 --------------------~---~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-r~~~pedvA 249 (277)
T 3tsc_A 194 --------------------K---HSIRVNSVHPGPVNTPMGSGDMVTAVGQAMETNPQLSHVLTPFLPD-WVAEPEDIA 249 (277)
T ss_dssp --------------------G---GTEEEEEEEESSBSSGGGSHHHHHHHHHHHHTCGGGTTTTCCSSSC-SCBCHHHHH
T ss_pred --------------------c---cCeEEEEEEeCCCcCCcccchhhhhhhhcccccHHHHHHhhhccCC-CCCCHHHHH
Confidence 5 79999999999999998754110 00000001111111 378999999
Q ss_pred HHHHHhhccccccccCceecccCC
Q psy13409 304 QTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 304 ~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
++++||+++ .++++||+.|...+
T Consensus 250 ~~v~~L~s~-~~~~itG~~i~vdG 272 (277)
T 3tsc_A 250 DTVCWLASD-ESRKVTAAQIPVDQ 272 (277)
T ss_dssp HHHHHHHSG-GGTTCCSCEEEEST
T ss_pred HHHHHHhCc-cccCCcCCEEeeCC
Confidence 999999976 56799999987544
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-42 Score=319.50 Aligned_cols=239 Identities=23% Similarity=0.310 Sum_probs=200.3
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
.+++++||++|||||++|||++++++|+++|++|++++|+.+++++..+++ +.++.++.+|++|+++++++
T Consensus 21 ~m~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~Dv~d~~~v~~~ 91 (266)
T 3grp_A 21 SMFKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADL---------GKDVFVFSANLSDRKSIKQL 91 (266)
T ss_dssp CTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---------CSSEEEEECCTTSHHHHHHH
T ss_pred chhccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---------CCceEEEEeecCCHHHHHHH
Confidence 456799999999999999999999999999999999999998877765543 56789999999999999999
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCc
Q psy13409 90 AQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~ 167 (330)
++++.+.++++|+||||||..... .+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||..+..+.
T Consensus 92 ~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~Iv~isS~~~~~~~---- 167 (266)
T 3grp_A 92 AEVAEREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIINITSIVGVVGN---- 167 (266)
T ss_dssp HHHHHHHHTSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCC----------
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEECCHHHcCCC----
Confidence 999999999999999999987543 57788999999999999999999999999998888999999999988774
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
++...|++||+|+++|++++|.|++
T Consensus 168 ----------~~~~~Y~asKaa~~~~~~~la~e~~--------------------------------------------- 192 (266)
T 3grp_A 168 ----------PGQTNYCAAKAGLIGFSKALAQEIA--------------------------------------------- 192 (266)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHG---------------------------------------------
T ss_pred ----------CCchhHHHHHHHHHHHHHHHHHHhh---------------------------------------------
Confidence 6788999999999999999999998
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
+ .||+||+|+||+|+|++.+.... ...+.........++.+|+|+|++++||+++ .++++||+.|...+
T Consensus 193 -----~---~gI~vn~v~PG~v~t~~~~~~~~--~~~~~~~~~~p~~r~~~~edvA~~v~~L~s~-~~~~itG~~i~vdG 261 (266)
T 3grp_A 193 -----S---RNITVNCIAPGFIKSAMTDKLNE--KQKEAIMAMIPMKRMGIGEEIAFATVYLASD-EAAYLTGQTLHING 261 (266)
T ss_dssp -----G---GTEEEEEEEECSBCSHHHHTCCH--HHHHHHHTTCTTCSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEEST
T ss_pred -----h---hCcEEEEEeeCcCCCchhhccCH--HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCc-cccCccCCEEEECC
Confidence 5 79999999999999998876532 1222222222333389999999999999966 56799999987643
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-42 Score=318.50 Aligned_cols=244 Identities=19% Similarity=0.226 Sum_probs=209.6
Q ss_pred cCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHH
Q psy13409 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRK 88 (330)
Q Consensus 9 ~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~ 88 (330)
+.+.+|+||++|||||++|||++++++|+++|++|++++|+.+++++..+++... .+.++.++.+|+++++++++
T Consensus 20 ~~~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~~~~~v~~ 94 (277)
T 4fc7_A 20 FCPDLLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGA-----TGRRCLPLSMDVRAPPAVMA 94 (277)
T ss_dssp BCTTTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHH-----HSSCEEEEECCTTCHHHHHH
T ss_pred CCccccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh-----cCCcEEEEEcCCCCHHHHHH
Confidence 4445689999999999999999999999999999999999999988888887654 26789999999999999999
Q ss_pred HHHHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCC
Q psy13409 89 CAQEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSM 166 (330)
Q Consensus 89 l~~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~ 166 (330)
+++++.+.++++|+||||||.... ..+.+.++|++++++|+.+++++++.++|.|.+++.|+||++||..+..+.
T Consensus 95 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~--- 171 (277)
T 4fc7_A 95 AVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITATLGNRGQ--- 171 (277)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCSHHHHTC---
T ss_pred HHHHHHHHcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCCCC---
Confidence 999999999999999999997653 367899999999999999999999999999988878999999999888775
Q ss_pred cccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccc
Q psy13409 167 HFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKN 246 (330)
Q Consensus 167 ~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (330)
+....|++||+|+++|++++|.|++
T Consensus 172 -----------~~~~~Y~asKaa~~~l~~~la~e~~-------------------------------------------- 196 (277)
T 4fc7_A 172 -----------ALQVHAGSAKAAVDAMTRHLAVEWG-------------------------------------------- 196 (277)
T ss_dssp -----------TTCHHHHHHHHHHHHHHHHHHHHHG--------------------------------------------
T ss_pred -----------CCcHHHHHHHHHHHHHHHHHHHHhh--------------------------------------------
Confidence 6788999999999999999999999
Q ss_pred cccCCCCCCCCceeEEEeeCcccccCccccc-CCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCceec
Q psy13409 247 VLFHPPGANITNVNTYAVHPGVVDTELSRHF-DSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYY 323 (330)
Q Consensus 247 ~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~ 323 (330)
+ .||+||+|+||+|+|++.... ........... .++++ +.+|+|+|++++||+++ .++++||+.|
T Consensus 197 ------~---~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~p~~r--~~~p~dvA~~v~fL~s~-~~~~itG~~i 264 (277)
T 4fc7_A 197 ------P---QNIRVNSLAPGPISGTEGLRRLGGPQASLSTKVTASPLQR--LGNKTEIAHSVLYLASP-LASYVTGAVL 264 (277)
T ss_dssp ------G---GTEEEEEEEECCBSSSHHHHHHSCCHHHHHHHHHTSTTSS--CBCHHHHHHHHHHHHSG-GGTTCCSCEE
T ss_pred ------h---cCeEEEEEEECCEecchhhhhccCCHHHHHHHhccCCCCC--CcCHHHHHHHHHHHcCC-ccCCcCCCEE
Confidence 5 799999999999999864322 22222222222 34444 89999999999999965 6789999998
Q ss_pred ccCC
Q psy13409 324 AKAD 327 (330)
Q Consensus 324 ~~~~ 327 (330)
...+
T Consensus 265 ~vdG 268 (277)
T 4fc7_A 265 VADG 268 (277)
T ss_dssp EEST
T ss_pred EECC
Confidence 7543
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-41 Score=315.54 Aligned_cols=244 Identities=21% Similarity=0.289 Sum_probs=204.3
Q ss_pred cCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecC----------------hhHHHHHHHHHHHhhcccCCCCe
Q psy13409 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRS----------------LEKAETAADDIRTSLKDVKDAGE 72 (330)
Q Consensus 9 ~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~----------------~~~l~~~~~~l~~~~~~~~~~~~ 72 (330)
.++.+++||++|||||++|||++++++|+++|++|++++|+ .+.+++..+++.. .+.+
T Consensus 4 ~m~~~l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 77 (286)
T 3uve_A 4 SMTGRVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKG------HNRR 77 (286)
T ss_dssp --CCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHT------TTCC
T ss_pred CCCcccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhh------cCCc
Confidence 34567999999999999999999999999999999999987 6667776666654 3678
Q ss_pred EEEEEccCCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCC---CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-C
Q psy13409 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMC---PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-P 148 (330)
Q Consensus 73 v~~i~~Dls~~~si~~l~~~i~~~~g~iDvlInnAG~~~~---~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~ 148 (330)
+.++.+|++++++++++++++.+.++++|+||||||+... ..+.+.++|++++++|+.+++++++.++|.|.+++ .
T Consensus 78 ~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~ 157 (286)
T 3uve_A 78 IVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRG 157 (286)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSC
T ss_pred eEEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999998653 35778999999999999999999999999998876 6
Q ss_pred CeEEEEcCCCcccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhh
Q psy13409 149 ARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLT 228 (330)
Q Consensus 149 g~IV~iSS~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (330)
|+||++||..+..+. +....|++||+|+++|+++||.|++
T Consensus 158 g~iv~isS~~~~~~~--------------~~~~~Y~asKaa~~~~~~~la~e~~-------------------------- 197 (286)
T 3uve_A 158 GSIILTSSVGGLKAY--------------PHTGHYVAAKHGVVGLMRAFGVELG-------------------------- 197 (286)
T ss_dssp EEEEEECCGGGTSCC--------------TTCHHHHHHHHHHHHHHHHHHHHHG--------------------------
T ss_pred cEEEEECchhhccCC--------------CCccHHHHHHHHHHHHHHHHHHHhc--------------------------
Confidence 899999999988774 7788999999999999999999999
Q ss_pred hhhhcccCCCCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccC------C--Cchhh---HHH---HHHhhhh
Q psy13409 229 ILLCDANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFD------S--IIPGT---AWL---YQRVGGL 294 (330)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~------~--~~~~~---~~~---~~~~~~~ 294 (330)
+ .||+||+|+||+|+|++.+... . ..... ... ..... .
T Consensus 198 ------------------------~---~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ 249 (286)
T 3uve_A 198 ------------------------Q---HMIRVNSVHPTHVKTPMLHNEGTFKMFRPDLENPGPDDMAPICQMFHTLP-I 249 (286)
T ss_dssp ------------------------G---GTEEEEEEEESSBSSTTTSSHHHHHHHCTTSSSCCHHHHHHHHHTTCSSS-C
T ss_pred ------------------------c---cCeEEEEEecCcccCCcccccchhhhccccccccchhhHHHHHHhhhccC-C
Confidence 5 7999999999999999875321 0 00001 110 11122 3
Q ss_pred hccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 295 FIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 295 ~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
++.+|+|+|++++||+++ .++++||+.|...+
T Consensus 250 r~~~p~dvA~~v~fL~s~-~a~~itG~~i~vdG 281 (286)
T 3uve_A 250 PWVEPIDISNAVLFFASD-EARYITGVTLPIDA 281 (286)
T ss_dssp SCBCHHHHHHHHHHHHSG-GGTTCCSCEEEEST
T ss_pred CcCCHHHHHHHHHHHcCc-cccCCcCCEEeECC
Confidence 478999999999999966 57899999987543
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-42 Score=322.52 Aligned_cols=244 Identities=24% Similarity=0.271 Sum_probs=210.1
Q ss_pred cCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHH
Q psy13409 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRK 88 (330)
Q Consensus 9 ~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~ 88 (330)
..+++++||++|||||++|||++++++|+++|++|++++|+.+++++..+++.+. ...++.++.+|++|++++++
T Consensus 34 ~~m~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~~Dv~d~~~v~~ 108 (293)
T 3rih_A 34 KVMFDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGEL-----GAGNVIGVRLDVSDPGSCAD 108 (293)
T ss_dssp CCTTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTS-----SSSCEEEEECCTTCHHHHHH
T ss_pred ccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhh-----CCCcEEEEEEeCCCHHHHHH
Confidence 4456799999999999999999999999999999999999999988888877653 23689999999999999999
Q ss_pred HHHHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcc-cCCCC
Q psy13409 89 CAQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHT-WGDGS 165 (330)
Q Consensus 89 l~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~-~~~~~ 165 (330)
+++++.+.++++|+||||||+.... .+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||..+. .+.
T Consensus 109 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iV~isS~~~~~~~~-- 186 (293)
T 3rih_A 109 AARTVVDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGRGRVILTSSITGPVTGY-- 186 (293)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSSCEEEEECCSBTTTBBC--
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEeChhhccCCC--
Confidence 9999999999999999999987543 67899999999999999999999999999999888999999998875 443
Q ss_pred CcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccc
Q psy13409 166 MHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCK 245 (330)
Q Consensus 166 ~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (330)
++...|++||+|+++|++++|.|++
T Consensus 187 ------------~~~~~Y~asKaa~~~l~~~la~e~~------------------------------------------- 211 (293)
T 3rih_A 187 ------------PGWSHYGASKAAQLGFMRTAAIELA------------------------------------------- 211 (293)
T ss_dssp ------------TTCHHHHHHHHHHHHHHHHHHHHHG-------------------------------------------
T ss_pred ------------CCCHHHHHHHHHHHHHHHHHHHHHh-------------------------------------------
Confidence 6788999999999999999999999
Q ss_pred ccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceeccc
Q psy13409 246 NVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAK 325 (330)
Q Consensus 246 ~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~ 325 (330)
+ .||+||+|+||+|+|++...... ...+.........++.+|+|+|++++||+++ .++++||+.|..
T Consensus 212 -------~---~gI~vn~v~PG~v~t~~~~~~~~--~~~~~~~~~~p~~r~~~p~dvA~~v~fL~s~-~a~~itG~~i~v 278 (293)
T 3rih_A 212 -------P---RGVTVNAILPGNILTEGLVDMGE--EYISGMARSIPMGMLGSPVDIGHLAAFLATD-EAGYITGQAIVV 278 (293)
T ss_dssp -------G---GTCEEEEEEECSBCCHHHHHTCH--HHHHHHHTTSTTSSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEE
T ss_pred -------h---hCeEEEEEecCCCcCcchhhccH--HHHHHHHhcCCCCCCCCHHHHHHHHHHHhCc-cccCCCCCEEEE
Confidence 5 79999999999999998765432 1222222222223388999999999999966 568999999875
Q ss_pred CC
Q psy13409 326 AD 327 (330)
Q Consensus 326 ~~ 327 (330)
.+
T Consensus 279 dG 280 (293)
T 3rih_A 279 DG 280 (293)
T ss_dssp ST
T ss_pred CC
Confidence 44
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-42 Score=319.88 Aligned_cols=244 Identities=23% Similarity=0.262 Sum_probs=209.5
Q ss_pred CcccCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHH
Q psy13409 6 GKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKS 85 (330)
Q Consensus 6 ~~~~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~s 85 (330)
....++++++||++|||||++|||++++++|+++|++|++++|+.+.+++..+++.. .+.++.++.+|++++++
T Consensus 23 ~~~~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~------~~~~~~~~~~Dv~~~~~ 96 (275)
T 4imr_A 23 MRLETIFGLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIA------SGGTAQELAGDLSEAGA 96 (275)
T ss_dssp TSHHHHHCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHH------TTCCEEEEECCTTSTTH
T ss_pred ccccccCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh------cCCeEEEEEecCCCHHH
Confidence 333445679999999999999999999999999999999999999988888888766 36789999999999999
Q ss_pred HHHHHHHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCC
Q psy13409 86 VRKCAQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGD 163 (330)
Q Consensus 86 i~~l~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~ 163 (330)
++++++.+.+. +++|+||||||..... .+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||..+..+.
T Consensus 97 ~~~~~~~~~~~-g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~ 175 (275)
T 4imr_A 97 GTDLIERAEAI-APVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKWGRVVSIGSINQLRPK 175 (275)
T ss_dssp HHHHHHHHHHH-SCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC
T ss_pred HHHHHHHHHHh-CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCCCC
Confidence 99999999887 8999999999986543 67899999999999999999999999999998888999999999887653
Q ss_pred CCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccc
Q psy13409 164 GSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHY 243 (330)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (330)
+....|++||+|+++|++++|.|++
T Consensus 176 --------------~~~~~Y~asKaa~~~l~~~la~e~~----------------------------------------- 200 (275)
T 4imr_A 176 --------------SVVTAYAATKAAQHNLIQSQARDFA----------------------------------------- 200 (275)
T ss_dssp --------------TTBHHHHHHHHHHHHHHHHHHHHHG-----------------------------------------
T ss_pred --------------CCchhhHHHHHHHHHHHHHHHHHhc-----------------------------------------
Confidence 6778899999999999999999998
Q ss_pred ccccccCCCCCCCCceeEEEeeCcccccCcccccCCC-chhhHHHHH---HhhhhhccChHHHHHHHHHhhccccccccC
Q psy13409 244 CKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSI-IPGTAWLYQ---RVGGLFIKSPLQGAQTTLYCALDKKCERET 319 (330)
Q Consensus 244 ~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~ 319 (330)
+ .||+||+|+||+|+|++....... ......... ++++ +.+|+|+|++++||+++ .++++|
T Consensus 201 ---------~---~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~p~~r--~~~pedvA~~v~fL~s~-~a~~it 265 (275)
T 4imr_A 201 ---------G---DNVLLNTLAPGLVDTDRNADRRAQDPEGWDEYVRTLNWMGR--AGRPEEMVGAALFLASE-ACSFMT 265 (275)
T ss_dssp ---------G---GTEEEEEEEESSBCSHHHHHHHHHCHHHHHHHHHHHSTTCS--CBCGGGGHHHHHHHHSG-GGTTCC
T ss_pred ---------c---cCcEEEEEEeccccCcccccccccChHHHHHHHhhcCccCC--CcCHHHHHHHHHHHcCc-ccCCCC
Confidence 5 799999999999999987654321 111122222 4555 89999999999999966 568999
Q ss_pred ceecccC
Q psy13409 320 GLYYAKA 326 (330)
Q Consensus 320 G~~~~~~ 326 (330)
|+.|...
T Consensus 266 G~~i~vd 272 (275)
T 4imr_A 266 GETIFLT 272 (275)
T ss_dssp SCEEEES
T ss_pred CCEEEeC
Confidence 9998754
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=315.43 Aligned_cols=245 Identities=24% Similarity=0.326 Sum_probs=205.5
Q ss_pred cccCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHH
Q psy13409 7 KCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSV 86 (330)
Q Consensus 7 ~~~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si 86 (330)
++...++++||++|||||++|||++++++|+++|++|++++|+ +.+++..+++.. .+.++.++.+|++|++++
T Consensus 22 ~m~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~-~~~~~~~~~~~~------~~~~~~~~~~Dv~d~~~v 94 (273)
T 3uf0_A 22 SMTGPFSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT-DGVKEVADEIAD------GGGSAEAVVADLADLEGA 94 (273)
T ss_dssp ---CTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS-THHHHHHHHHHT------TTCEEEEEECCTTCHHHH
T ss_pred hcccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCH-HHHHHHHHHHHh------cCCcEEEEEecCCCHHHH
Confidence 3555678999999999999999999999999999999999976 455666666654 367899999999999999
Q ss_pred HHHHHHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCC
Q psy13409 87 RKCAQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDG 164 (330)
Q Consensus 87 ~~l~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~ 164 (330)
+++.+. .+.++++|+||||||+.... .+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||..+..+.
T Consensus 95 ~~~~~~-~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~- 172 (273)
T 3uf0_A 95 ANVAEE-LAATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSGRIVTIASMLSFQGG- 172 (273)
T ss_dssp HHHHHH-HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC-
T ss_pred HHHHHH-HHhcCCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchHhcCCC-
Confidence 999554 45568999999999987543 67899999999999999999999999999999888999999999988774
Q ss_pred CCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccc
Q psy13409 165 SMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYC 244 (330)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
++...|++||+|+++|++++|.|++
T Consensus 173 -------------~~~~~Y~asKaa~~~l~~~la~e~~------------------------------------------ 197 (273)
T 3uf0_A 173 -------------RNVAAYAASKHAVVGLTRALASEWA------------------------------------------ 197 (273)
T ss_dssp -------------SSCHHHHHHHHHHHHHHHHHHHHHG------------------------------------------
T ss_pred -------------CCChhHHHHHHHHHHHHHHHHHHHh------------------------------------------
Confidence 6788999999999999999999999
Q ss_pred cccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecc
Q psy13409 245 KNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYA 324 (330)
Q Consensus 245 ~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~ 324 (330)
+ .||+||+|+||+|+|++...........+.........++.+|+|+|++++||+++ .++++||+.|.
T Consensus 198 --------~---~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedva~~v~~L~s~-~a~~itG~~i~ 265 (273)
T 3uf0_A 198 --------G---RGVGVNALAPGYVVTANTAALRADDERAAEITARIPAGRWATPEDMVGPAVFLASD-AASYVHGQVLA 265 (273)
T ss_dssp --------G---GTEEEEEEEECSBCSGGGHHHHTSHHHHHHHHHHSTTSSCBCGGGGHHHHHHHHSG-GGTTCCSCEEE
T ss_pred --------h---cCcEEEEEEeCCCcCCchhhcccCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCc-hhcCCcCCEEE
Confidence 5 79999999999999998876544333333333333333489999999999999966 56799999987
Q ss_pred cCC
Q psy13409 325 KAD 327 (330)
Q Consensus 325 ~~~ 327 (330)
..+
T Consensus 266 vdG 268 (273)
T 3uf0_A 266 VDG 268 (273)
T ss_dssp EST
T ss_pred ECc
Confidence 654
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=312.08 Aligned_cols=240 Identities=25% Similarity=0.317 Sum_probs=204.5
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
|.+++||++|||||++|||++++++|+++|++|++++|+.+++++..+++ +.++.++.+|+++++++++++
T Consensus 3 m~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~D~~~~~~v~~~~ 73 (259)
T 4e6p_A 3 MKRLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI---------GPAAYAVQMDVTRQDSIDAAI 73 (259)
T ss_dssp -CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---------CTTEEEEECCTTCHHHHHHHH
T ss_pred cccCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---------CCCceEEEeeCCCHHHHHHHH
Confidence 45789999999999999999999999999999999999998887776655 346789999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCCc
Q psy13409 91 QEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~~ 167 (330)
+++.+.++++|+||||||.... ..+.+.++|++.+++|+.+++++++.++|.|.+++ .|+||++||..+..+.
T Consensus 74 ~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---- 149 (259)
T 4e6p_A 74 AATVEHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRRGE---- 149 (259)
T ss_dssp HHHHHHSSSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC----
T ss_pred HHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhccCC----
Confidence 9999999999999999998653 36788999999999999999999999999998876 6899999999988774
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
+....|++||+|+++|+++++.|++
T Consensus 150 ----------~~~~~Y~asK~a~~~~~~~la~e~~--------------------------------------------- 174 (259)
T 4e6p_A 150 ----------ALVAIYCATKAAVISLTQSAGLDLI--------------------------------------------- 174 (259)
T ss_dssp ----------TTBHHHHHHHHHHHHHHHHHHHHHG---------------------------------------------
T ss_pred ----------CCChHHHHHHHHHHHHHHHHHHHhh---------------------------------------------
Confidence 6788999999999999999999998
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccC---------CCchhhHHHHHHhhhhhccChHHHHHHHHHhhcccccccc
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFD---------SIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERE 318 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~ 318 (330)
+ .||+||+|+||+|+|++..... ................++.+|+|+|++++||+++ .++++
T Consensus 175 -----~---~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~v~~L~s~-~~~~i 245 (259)
T 4e6p_A 175 -----K---HRINVNAIAPGVVDGEHWDGVDALFARYENRPRGEKKRLVGEAVPFGRMGTAEDLTGMAIFLASA-ESDYI 245 (259)
T ss_dssp -----G---GTEEEEEEEECCBCSTTHHHHHHHHHHHHTCCTTHHHHHHHHHSTTSSCBCTHHHHHHHHHTTSG-GGTTC
T ss_pred -----h---cCCEEEEEEECCCccchhhhhhhhhhhhccCChHHHHHHHhccCCCCCCcCHHHHHHHHHHHhCC-ccCCC
Confidence 5 7999999999999999876431 0111122222222233389999999999999965 56799
Q ss_pred CceecccCC
Q psy13409 319 TGLYYAKAD 327 (330)
Q Consensus 319 ~G~~~~~~~ 327 (330)
||+.|....
T Consensus 246 tG~~i~vdg 254 (259)
T 4e6p_A 246 VSQTYNVDG 254 (259)
T ss_dssp CSCEEEEST
T ss_pred CCCEEEECc
Confidence 999987544
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=316.46 Aligned_cols=241 Identities=22% Similarity=0.262 Sum_probs=191.9
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEec-ChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACR-SLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R-~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
+.++++|++|||||++|||++++++|+++|++|++++| +.+.+++..+++.. .+.++.++.+|++|+++++++
T Consensus 24 m~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Dv~d~~~v~~~ 97 (280)
T 4da9_A 24 MTQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSG------LGARVIFLRADLADLSSHQAT 97 (280)
T ss_dssp CSCCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHH------TTCCEEEEECCTTSGGGHHHH
T ss_pred hhccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHh------cCCcEEEEEecCCCHHHHHHH
Confidence 44689999999999999999999999999999999995 77778888777765 367899999999999999999
Q ss_pred HHHHHhcCCCeeEEEEcCCCCC----CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC---CCeEEEEcCCCcccC
Q psy13409 90 AQEILDNESAIHLLINNAGVMM----CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA---PARIINLSSLAHTWG 162 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~----~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~---~g~IV~iSS~~~~~~ 162 (330)
++++.+.++++|+||||||+.. +..+.+.++|++.+++|+.+++++++.++|.|.+++ .|+||++||..+..+
T Consensus 98 ~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~ 177 (280)
T 4da9_A 98 VDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVMT 177 (280)
T ss_dssp HHHHHHHHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC-----
T ss_pred HHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhccC
Confidence 9999999999999999999842 236789999999999999999999999999998876 689999999998877
Q ss_pred CCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcc
Q psy13409 163 DGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNH 242 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (330)
. +....|++||+|+++|++++|.|++
T Consensus 178 ~--------------~~~~~Y~asKaa~~~l~~~la~e~~---------------------------------------- 203 (280)
T 4da9_A 178 S--------------PERLDYCMSKAGLAAFSQGLALRLA---------------------------------------- 203 (280)
T ss_dssp ----------------CCHHHHHHHHHHHHHHHHHHHHHT----------------------------------------
T ss_pred C--------------CCccHHHHHHHHHHHHHHHHHHHHH----------------------------------------
Confidence 4 6788999999999999999999998
Q ss_pred cccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHH-HHHhhhhhccChHHHHHHHHHhhccccccccCce
Q psy13409 243 YCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWL-YQRVGGLFIKSPLQGAQTTLYCALDKKCERETGL 321 (330)
Q Consensus 243 ~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~ 321 (330)
+ .||+||+|+||+|+|++.............. ..++++ +.+|+|+|++++||+++ .++++||+
T Consensus 204 ----------~---~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~p~~r--~~~pedvA~~v~~L~s~-~~~~itG~ 267 (280)
T 4da9_A 204 ----------E---TGIAVFEVRPGIIRSDMTAAVSGKYDGLIESGLVPMRR--WGEPEDIGNIVAGLAGG-QFGFATGS 267 (280)
T ss_dssp ----------T---TTEEEEEEEECCBCC----------------------C--CBCHHHHHHHHHHHHTS-TTGGGTTC
T ss_pred ----------H---hCcEEEEEeecCCcCCchhhcchhHHHHHhhcCCCcCC--cCCHHHHHHHHHHHhCc-cccCCCCC
Confidence 6 7999999999999999987654322111111 245555 89999999999999966 56799999
Q ss_pred ecccCC
Q psy13409 322 YYAKAD 327 (330)
Q Consensus 322 ~~~~~~ 327 (330)
.|...+
T Consensus 268 ~i~vdG 273 (280)
T 4da9_A 268 VIQADG 273 (280)
T ss_dssp EEEEST
T ss_pred EEEECC
Confidence 987654
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=314.21 Aligned_cols=241 Identities=27% Similarity=0.259 Sum_probs=203.8
Q ss_pred cCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHH
Q psy13409 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRK 88 (330)
Q Consensus 9 ~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~ 88 (330)
.++.+++||++|||||++|||++++++|+++|++|++++|+.+++++..+++ +.++.++.+|+++++++++
T Consensus 4 ~m~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~Dv~~~~~v~~ 74 (271)
T 3tzq_B 4 SMTAELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASV---------GRGAVHHVVDLTNEVSVRA 74 (271)
T ss_dssp ---CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHH---------CTTCEEEECCTTCHHHHHH
T ss_pred CCCcCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh---------CCCeEEEECCCCCHHHHHH
Confidence 3456799999999999999999999999999999999999998887776654 4567889999999999999
Q ss_pred HHHHHHhcCCCeeEEEEcCCCCCC----CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCC
Q psy13409 89 CAQEILDNESAIHLLINNAGVMMC----PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDG 164 (330)
Q Consensus 89 l~~~i~~~~g~iDvlInnAG~~~~----~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~ 164 (330)
+++++.+.++++|++|||||...+ ..+.+.++|++.+++|+.+++++++.++|+|.+++.|+||++||..+..+.
T Consensus 75 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~- 153 (271)
T 3tzq_B 75 LIDFTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAGGGAIVNISSATAHAAY- 153 (271)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSBC-
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCHHHcCCC-
Confidence 999999999999999999998733 257899999999999999999999999999998888999999999887764
Q ss_pred CCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccc
Q psy13409 165 SMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYC 244 (330)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
+....|++||+|+++|+++++.|++
T Consensus 154 -------------~~~~~Y~asKaa~~~l~~~la~e~~------------------------------------------ 178 (271)
T 3tzq_B 154 -------------DMSTAYACTKAAIETLTRYVATQYG------------------------------------------ 178 (271)
T ss_dssp -------------SSCHHHHHHHHHHHHHHHHHHHHHG------------------------------------------
T ss_pred -------------CCChHHHHHHHHHHHHHHHHHHHHh------------------------------------------
Confidence 6788999999999999999999999
Q ss_pred cccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecc
Q psy13409 245 KNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYA 324 (330)
Q Consensus 245 ~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~ 324 (330)
+ .||+||+|+||+|+|++.+.... ..............++.+|+|+|++++||+++ .++++||+.|.
T Consensus 179 --------~---~gi~vn~v~PG~v~t~~~~~~~~-~~~~~~~~~~~~~~r~~~p~dvA~~v~~L~s~-~~~~itG~~i~ 245 (271)
T 3tzq_B 179 --------R---HGVRCNAIAPGLVRTPRLEVGLP-QPIVDIFATHHLAGRIGEPHEIAELVCFLASD-RAAFITGQVIA 245 (271)
T ss_dssp --------G---GTEEEEEEEECCBCCTTTC---C-HHHHHHHHTTSTTSSCBCHHHHHHHHHHHHSG-GGTTCCSCEEE
T ss_pred --------h---cCEEEEEEEeCCCcCccccccCC-HHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCc-ccCCcCCCEEE
Confidence 5 79999999999999998763322 12222222222223388999999999999966 56899999987
Q ss_pred cCC
Q psy13409 325 KAD 327 (330)
Q Consensus 325 ~~~ 327 (330)
..+
T Consensus 246 vdG 248 (271)
T 3tzq_B 246 ADS 248 (271)
T ss_dssp EST
T ss_pred ECC
Confidence 543
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-41 Score=318.14 Aligned_cols=248 Identities=17% Similarity=0.238 Sum_probs=205.8
Q ss_pred cCcccCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecC------------hhHHHHHHHHHHHhhcccCCCCe
Q psy13409 5 SGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRS------------LEKAETAADDIRTSLKDVKDAGE 72 (330)
Q Consensus 5 ~~~~~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~------------~~~l~~~~~~l~~~~~~~~~~~~ 72 (330)
.++..++.+++||++|||||++|||+++++.|+++|++|++++|+ .+.+++..+++.. .+.+
T Consensus 17 ~~p~~m~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 90 (299)
T 3t7c_A 17 QGPGSMAGKVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEA------LGRR 90 (299)
T ss_dssp -----CCCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHH------TTCC
T ss_pred CCCcccccccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHh------cCCc
Confidence 344455667999999999999999999999999999999999987 6777777777765 3678
Q ss_pred EEEEEccCCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCC---CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-C
Q psy13409 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMC---PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-P 148 (330)
Q Consensus 73 v~~i~~Dls~~~si~~l~~~i~~~~g~iDvlInnAG~~~~---~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~ 148 (330)
+.++.+|++|+++++++++++.+.++++|+||||||+... ..+.+.++|++.+++|+.+++++++.++|.|.+++ .
T Consensus 91 ~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~ 170 (299)
T 3t7c_A 91 IIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRG 170 (299)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSC
T ss_pred eEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999998753 35789999999999999999999999999987765 6
Q ss_pred CeEEEEcCCCcccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhh
Q psy13409 149 ARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLT 228 (330)
Q Consensus 149 g~IV~iSS~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (330)
|+||++||.++..+. +....|++||+|+++|++++|.|++
T Consensus 171 g~Iv~isS~~~~~~~--------------~~~~~Y~asKaa~~~l~~~la~e~~-------------------------- 210 (299)
T 3t7c_A 171 GSIVFTSSIGGLRGA--------------ENIGNYIASKHGLHGLMRTMALELG-------------------------- 210 (299)
T ss_dssp EEEEEECCGGGTSCC--------------TTCHHHHHHHHHHHHHHHHHHHHHG--------------------------
T ss_pred cEEEEECChhhccCC--------------CCcchHHHHHHHHHHHHHHHHHHhc--------------------------
Confidence 899999999988774 7788999999999999999999999
Q ss_pred hhhhcccCCCCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccC------C--CchhhHH------HHHHhhhh
Q psy13409 229 ILLCDANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFD------S--IIPGTAW------LYQRVGGL 294 (330)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~------~--~~~~~~~------~~~~~~~~ 294 (330)
+ .||+||+|+||+|+|++..... . .....+. ...... .
T Consensus 211 ------------------------~---~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ 262 (299)
T 3t7c_A 211 ------------------------P---RNIRVNIVCPSSVATPMLLNEPTYRMFRPDLENPTVEDFQVASRQMHVLP-I 262 (299)
T ss_dssp ------------------------G---GTEEEEEEEESCBSSTTTSSHHHHHHHCTTSSSCCHHHHHHHHHHHSSSS-C
T ss_pred ------------------------c---cCcEEEEEecCCccCccccccchhhhhhhhhccchhhHHHHHhhhhcccC-c
Confidence 5 7999999999999999875321 0 0011111 111121 2
Q ss_pred hccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 295 FIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 295 ~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
++.+|+|+|++++||+++ .++++||+.|...+
T Consensus 263 r~~~pedvA~~v~fL~s~-~a~~itG~~i~vdG 294 (299)
T 3t7c_A 263 PYVEPADISNAILFLVSD-DARYITGVSLPVDG 294 (299)
T ss_dssp SCBCHHHHHHHHHHHHSG-GGTTCCSCEEEEST
T ss_pred CCCCHHHHHHHHHHHhCc-ccccCcCCEEeeCC
Confidence 378999999999999966 56899999987654
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=315.85 Aligned_cols=243 Identities=23% Similarity=0.269 Sum_probs=204.5
Q ss_pred ccCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHH
Q psy13409 8 CTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVR 87 (330)
Q Consensus 8 ~~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~ 87 (330)
++..++++||++|||||++|||++++++|+++|++|++++|+.+.+++..+++ +.++.++.+|++++++++
T Consensus 19 ~~~~~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~Dv~d~~~v~ 89 (277)
T 4dqx_A 19 YFQSMDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEI---------GSKAFGVRVDVSSAKDAE 89 (277)
T ss_dssp ---CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH---------CTTEEEEECCTTCHHHHH
T ss_pred ccccCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---------CCceEEEEecCCCHHHHH
Confidence 34556799999999999999999999999999999999999998877766553 457889999999999999
Q ss_pred HHHHHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCC
Q psy13409 88 KCAQEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGS 165 (330)
Q Consensus 88 ~l~~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~ 165 (330)
++++++.+.++++|+||||||.... ..+.+.++|++.+++|+.++++++++++|.|.+++.|+||++||..+..+.
T Consensus 90 ~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-- 167 (277)
T 4dqx_A 90 SMVEKTTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTATSAI-- 167 (277)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECCGGGTSCC--
T ss_pred HHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECchhhCcCC--
Confidence 9999999999999999999998654 367889999999999999999999999999998888999999999887774
Q ss_pred CcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccc
Q psy13409 166 MHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCK 245 (330)
Q Consensus 166 ~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (330)
++...|++||+|+++|+++++.|++
T Consensus 168 ------------~~~~~Y~asKaa~~~l~~~la~e~~------------------------------------------- 192 (277)
T 4dqx_A 168 ------------ADRTAYVASKGAISSLTRAMAMDHA------------------------------------------- 192 (277)
T ss_dssp ------------TTBHHHHHHHHHHHHHHHHHHHHHG-------------------------------------------
T ss_pred ------------CCChhHHHHHHHHHHHHHHHHHHhh-------------------------------------------
Confidence 7788999999999999999999998
Q ss_pred ccccCCCCCCCCceeEEEeeCcccccCcccccC-CCchhhHH---HHHHhhhhhccChHHHHHHHHHhhccccccccCce
Q psy13409 246 NVLFHPPGANITNVNTYAVHPGVVDTELSRHFD-SIIPGTAW---LYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGL 321 (330)
Q Consensus 246 ~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~ 321 (330)
+ .||+||+|+||+|+|++..... ........ ........++.+|+|+|++++||+++ .++++||+
T Consensus 193 -------~---~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~pedvA~~v~~L~s~-~~~~itG~ 261 (277)
T 4dqx_A 193 -------K---EGIRVNAVAPGTIDSPYFTKIFAEAKDPAKLRSDFNARAVMDRMGTAEEIAEAMLFLASD-RSRFATGS 261 (277)
T ss_dssp -------G---GTEEEEEEEECSBCCHHHHHHHHTCSCHHHHHHHHHTTSTTCSCBCHHHHHHHHHHHHSG-GGTTCCSC
T ss_pred -------h---cCeEEEEEeeCcCcCchhhhhcccccchhHHHHHHHhcCcccCCcCHHHHHHHHHHHhCC-ccCCCcCC
Confidence 5 7999999999999999843321 11111111 22222223388999999999999966 56799999
Q ss_pred ecccCC
Q psy13409 322 YYAKAD 327 (330)
Q Consensus 322 ~~~~~~ 327 (330)
.|...+
T Consensus 262 ~i~vdG 267 (277)
T 4dqx_A 262 ILTVDG 267 (277)
T ss_dssp EEEESS
T ss_pred EEEECC
Confidence 987654
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-41 Score=313.64 Aligned_cols=244 Identities=21% Similarity=0.276 Sum_probs=203.8
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecC------------hhHHHHHHHHHHHhhcccCCCCeEEEEE
Q psy13409 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRS------------LEKAETAADDIRTSLKDVKDAGEVVIRQ 77 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~------------~~~l~~~~~~l~~~~~~~~~~~~v~~i~ 77 (330)
.|.+++||++|||||++|||++++++|+++|++|++++|+ .+.+++..+.+.. .+.++.++.
T Consensus 4 ~m~~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 77 (281)
T 3s55_A 4 SMADFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEK------TGRRCISAK 77 (281)
T ss_dssp --CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHH------TTCCEEEEE
T ss_pred cccccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHh------cCCeEEEEe
Confidence 4567999999999999999999999999999999999997 5566666666655 367899999
Q ss_pred ccCCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEc
Q psy13409 78 LDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLS 155 (330)
Q Consensus 78 ~Dls~~~si~~l~~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iS 155 (330)
+|++|+++++++++++.+.++++|+||||||+... ..+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++|
T Consensus 78 ~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~is 157 (281)
T 3s55_A 78 VDVKDRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVS 157 (281)
T ss_dssp CCTTCHHHHHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999999999999999999998753 3678999999999999999999999999999988889999999
Q ss_pred CCCcccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhccc
Q psy13409 156 SLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDAN 235 (330)
Q Consensus 156 S~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (330)
|..+..+. ++...|++||+|+++|++++|.|++
T Consensus 158 S~~~~~~~--------------~~~~~Y~asK~a~~~~~~~la~e~~--------------------------------- 190 (281)
T 3s55_A 158 SMLGHSAN--------------FAQASYVSSKWGVIGLTKCAAHDLV--------------------------------- 190 (281)
T ss_dssp CGGGGSCC--------------TTCHHHHHHHHHHHHHHHHHHHHTG---------------------------------
T ss_pred ChhhcCCC--------------CCCchhHHHHHHHHHHHHHHHHHHh---------------------------------
Confidence 99987774 6788999999999999999999998
Q ss_pred CCCCCcccccccccCCCCCCCCceeEEEeeCcccccCccccc------CCC--chhh---HHH--HHHhhhhhccChHHH
Q psy13409 236 LQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHF------DSI--IPGT---AWL--YQRVGGLFIKSPLQG 302 (330)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~------~~~--~~~~---~~~--~~~~~~~~~~~~~e~ 302 (330)
+ .||+||+|+||+|+|++.+.. ... .... ... .......++.+|+|+
T Consensus 191 -----------------~---~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~dv 250 (281)
T 3s55_A 191 -----------------G---YGITVNAVAPGNIETPMTHNDFVFGTMRPDLEKPTLKDVESVFASLHLQYAPFLKPEEV 250 (281)
T ss_dssp -----------------G---GTEEEEEEEECSBCSTTTSSHHHHHC-------CCHHHHHHHHHHHCSSSCSCBCHHHH
T ss_pred -----------------h---cCcEEEEEecCcccCccccchhhhccccccccccchhHHHHHHHhhhccCcCCCCHHHH
Confidence 5 799999999999999987531 100 0001 110 001111337899999
Q ss_pred HHHHHHhhccccccccCceecccCC
Q psy13409 303 AQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 303 a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
|++++||+++ .++++||+.|....
T Consensus 251 A~~v~~L~s~-~~~~itG~~i~vdg 274 (281)
T 3s55_A 251 TRAVLFLVDE-ASSHITGTVLPIDA 274 (281)
T ss_dssp HHHHHHHHSG-GGTTCCSCEEEEST
T ss_pred HHHHHHHcCC-cccCCCCCEEEECC
Confidence 9999999966 56799999987654
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=315.14 Aligned_cols=244 Identities=27% Similarity=0.342 Sum_probs=204.2
Q ss_pred cCccc-CCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCH
Q psy13409 5 SGKCT-ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSL 83 (330)
Q Consensus 5 ~~~~~-~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~ 83 (330)
.|+.. .+.+++||++|||||++|||++++++|+++|++|++++|+.+.+++..+++ +.++.++.+|++|+
T Consensus 17 ~g~~sm~~~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~Dv~d~ 87 (277)
T 3gvc_A 17 QGPGSMNHPDLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI---------GCGAAACRVDVSDE 87 (277)
T ss_dssp ----------CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH---------CSSCEEEECCTTCH
T ss_pred CCCCCCCccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---------CCcceEEEecCCCH
Confidence 34443 334799999999999999999999999999999999999998877776654 45688999999999
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCccc
Q psy13409 84 KSVRKCAQEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTW 161 (330)
Q Consensus 84 ~si~~l~~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~ 161 (330)
++++++++++.+.++++|+||||||.... ..+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||..+..
T Consensus 88 ~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~ 167 (277)
T 3gvc_A 88 QQIIAMVDACVAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQV 167 (277)
T ss_dssp HHHHHHHHHHHHHHSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcc
Confidence 99999999999999999999999998753 3578999999999999999999999999999988889999999999877
Q ss_pred CCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCc
Q psy13409 162 GDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTN 241 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (330)
+. ++...|++||+|+++|++++|.|++
T Consensus 168 ~~--------------~~~~~Y~asKaa~~~l~~~la~e~~--------------------------------------- 194 (277)
T 3gvc_A 168 AV--------------GGTGAYGMSKAGIIQLSRITAAELR--------------------------------------- 194 (277)
T ss_dssp CC--------------TTBHHHHHHHHHHHHHHHHHHHHHG---------------------------------------
T ss_pred CC--------------CCchhHHHHHHHHHHHHHHHHHHhc---------------------------------------
Confidence 74 7788999999999999999999999
Q ss_pred ccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCc-------hhhHHHHHHhhhhhccChHHHHHHHHHhhcccc
Q psy13409 242 HYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSII-------PGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKK 314 (330)
Q Consensus 242 ~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~ 314 (330)
+ .||+||+|+||+|+|++.+...... ........+.++ +.+|+|+|++++||+++ .
T Consensus 195 -----------~---~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~r--~~~pedvA~~v~~L~s~-~ 257 (277)
T 3gvc_A 195 -----------S---SGIRSNTLLPAFVDTPMQQTAMAMFDGALGAGGARSMIARLQGR--MAAPEEMAGIVVFLLSD-D 257 (277)
T ss_dssp -----------G---GTEEEEEEEECSBCCHHHHHHHTCC------CCHHHHHHHHHSS--CBCHHHHHHHHHHHHSG-G
T ss_pred -----------c---cCeEEEEEeeCCccCchHHHhhhcchhhHHHHhhhhhhhccccC--CCCHHHHHHHHHHHcCC-c
Confidence 5 7999999999999999865432210 011111344555 89999999999999966 5
Q ss_pred ccccCceecccCC
Q psy13409 315 CERETGLYYAKAD 327 (330)
Q Consensus 315 ~~~~~G~~~~~~~ 327 (330)
++++||+.|...+
T Consensus 258 a~~itG~~i~vdG 270 (277)
T 3gvc_A 258 ASMITGTTQIADG 270 (277)
T ss_dssp GTTCCSCEEEEST
T ss_pred cCCccCcEEEECC
Confidence 6799999987544
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-42 Score=310.42 Aligned_cols=238 Identities=24% Similarity=0.318 Sum_probs=205.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEec-ChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACR-SLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R-~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
+++|++|||||++|||++++++|+++|++|+++++ +.+.++++.+++.. .+.++.++.+|++|++++++++++
T Consensus 2 l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Dv~d~~~v~~~~~~ 75 (246)
T 3osu_A 2 KMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKA------KGVDSFAIQANVADADEVKAMIKE 75 (246)
T ss_dssp CCSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH------TTSCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh------cCCcEEEEEccCCCHHHHHHHHHH
Confidence 57899999999999999999999999999999887 55777777777765 367889999999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 93 ILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
+.+.++++|++|||||.... ..+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||..+..+.
T Consensus 76 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------- 148 (246)
T 3osu_A 76 VVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGN------- 148 (246)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC-------
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcCCC-------
Confidence 99999999999999998754 367899999999999999999999999999998888999999999888775
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
++...|++||+|+++|++++|.|++
T Consensus 149 -------~~~~~Y~~sK~a~~~~~~~la~e~~------------------------------------------------ 173 (246)
T 3osu_A 149 -------PGQANYVATKAGVIGLTKSAARELA------------------------------------------------ 173 (246)
T ss_dssp -------TTCHHHHHHHHHHHHHHHHHHHHHG------------------------------------------------
T ss_pred -------CCChHHHHHHHHHHHHHHHHHHHhc------------------------------------------------
Confidence 6788999999999999999999998
Q ss_pred CCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 251 PPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 251 ~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
+ .||+||+|+||+|+|++.+.... ...+.........++.+|+|+|++++||+++ .++++||+.|...+
T Consensus 174 --~---~gi~vn~v~PG~v~t~~~~~~~~--~~~~~~~~~~p~~r~~~~~dva~~v~~l~s~-~~~~itG~~i~vdg 242 (246)
T 3osu_A 174 --S---RGITVNAVAPGFIVSDMTDALSD--ELKEQMLTQIPLARFGQDTDIANTVAFLASD-KAKYITGQTIHVNG 242 (246)
T ss_dssp --G---GTEEEEEEEECSBGGGCCSCSCH--HHHHHHHTTCTTCSCBCHHHHHHHHHHHTSG-GGTTCCSCEEEEST
T ss_pred --c---cCeEEEEEEECCCcCCcccccCH--HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCc-cccCCCCCEEEeCC
Confidence 5 79999999999999999865432 2222232222233389999999999999966 56799999987543
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-41 Score=313.89 Aligned_cols=240 Identities=24% Similarity=0.283 Sum_probs=208.2
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
+++++||++|||||++|||++++++|+++|++|++++|+.+.++++.+++... +.++.++.+|++|++++++++
T Consensus 27 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~d~~~v~~~~ 100 (276)
T 3r1i_A 27 LFDLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGV------GGKALPIRCDVTQPDQVRGML 100 (276)
T ss_dssp GGCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT------TCCCEEEECCTTCHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEEcCCCCHHHHHHHH
Confidence 35799999999999999999999999999999999999999998888888663 568899999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCCc
Q psy13409 91 QEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~~ 167 (330)
+++.+.++++|+||||||..... .+.+.++|++.+++|+.+++++++.++|.|.+++ +|+||++||..+..+.
T Consensus 101 ~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~~~~~~---- 176 (276)
T 3r1i_A 101 DQMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHIIN---- 176 (276)
T ss_dssp HHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC----
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchHhcccC----
Confidence 99999999999999999987543 5788999999999999999999999999998876 4899999998877653
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
..+....|++||+|+++|++++|.|++
T Consensus 177 --------~~~~~~~Y~asKaa~~~l~~~la~e~~--------------------------------------------- 203 (276)
T 3r1i_A 177 --------IPQQVSHYCTSKAAVVHLTKAMAVELA--------------------------------------------- 203 (276)
T ss_dssp --------CSSCCHHHHHHHHHHHHHHHHHHHHHG---------------------------------------------
T ss_pred --------CCCCcchHHHHHHHHHHHHHHHHHHHh---------------------------------------------
Confidence 113568899999999999999999999
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCceeccc
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAK 325 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~ 325 (330)
+ .||+||+|+||+|+|++.+.... ..+... .++++ +.+|+|+|++++||+++ .++++||+.|..
T Consensus 204 -----~---~gIrvn~v~PG~v~T~~~~~~~~---~~~~~~~~~p~~r--~~~pedvA~~v~fL~s~-~~~~itG~~i~v 269 (276)
T 3r1i_A 204 -----P---HQIRVNSVSPGYIRTELVEPLAD---YHALWEPKIPLGR--MGRPEELTGLYLYLASA-ASSYMTGSDIVI 269 (276)
T ss_dssp -----G---GTEEEEEEEECCBCSTTTGGGGG---GHHHHGGGSTTSS--CBCGGGSHHHHHHHHSG-GGTTCCSCEEEE
T ss_pred -----h---cCcEEEEEeeCCCcCCccccchH---HHHHHHhcCCCCC--CcCHHHHHHHHHHHcCc-cccCccCcEEEE
Confidence 5 79999999999999999876532 122222 23444 89999999999999966 578999999876
Q ss_pred CC
Q psy13409 326 AD 327 (330)
Q Consensus 326 ~~ 327 (330)
.+
T Consensus 270 dG 271 (276)
T 3r1i_A 270 DG 271 (276)
T ss_dssp ST
T ss_pred Cc
Confidence 54
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-41 Score=313.92 Aligned_cols=242 Identities=23% Similarity=0.262 Sum_probs=200.5
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEec-ChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACR-SLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R-~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
+.++++|++|||||++|||++++++|+++|++|++++| +.+.+++..+++... .+.++.++.+|++|+++++++
T Consensus 20 ~~~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~d~~~v~~~ 94 (281)
T 3v2h_A 20 FQSMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGL-----SSGTVLHHPADMTKPSEIADM 94 (281)
T ss_dssp --CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTT-----CSSCEEEECCCTTCHHHHHHH
T ss_pred hhccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhc-----cCCcEEEEeCCCCCHHHHHHH
Confidence 45789999999999999999999999999999999999 666777777777653 357899999999999999999
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCc
Q psy13409 90 AQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~ 167 (330)
++++.+.++++|+||||||..... .+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||..+..+.
T Consensus 95 ~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~---- 170 (281)
T 3v2h_A 95 MAMVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLVAS---- 170 (281)
T ss_dssp HHHHHHHTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC----
T ss_pred HHHHHHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCcccccCC----
Confidence 999999999999999999987543 57789999999999999999999999999999888999999999988775
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
+....|++||+|+++|+++++.|++
T Consensus 171 ----------~~~~~Y~asKaa~~~l~~~la~e~~--------------------------------------------- 195 (281)
T 3v2h_A 171 ----------PFKSAYVAAKHGIMGLTKTVALEVA--------------------------------------------- 195 (281)
T ss_dssp ----------TTCHHHHHHHHHHHHHHHHHHHHHG---------------------------------------------
T ss_pred ----------CCchHHHHHHHHHHHHHHHHHHHhh---------------------------------------------
Confidence 6788999999999999999999998
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCCCchh----------hHHHH--HHhhhhhccChHHHHHHHHHhhccccc
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPG----------TAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKC 315 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~----------~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~ 315 (330)
+ .||+||+|+||+|+|++.......... .+... .++++ +.+|+|+|++++||+++ .+
T Consensus 196 -----~---~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r--~~~~edvA~~v~~L~s~-~a 264 (281)
T 3v2h_A 196 -----E---SGVTVNSICPGYVLTPLVEKQIPDQARTRGITEEQVINEVMLKGQPTKK--FITVEQVASLALYLAGD-DA 264 (281)
T ss_dssp -----G---GTEEEEEEEECSBCC----------------------------CCTTCS--CBCHHHHHHHHHHHHSS-GG
T ss_pred -----h---cCcEEEEEECCCCcCcchhhhcchhhhhcCCCHHHHHHHHHHhcCCCCC--ccCHHHHHHHHHHHcCC-Cc
Confidence 5 799999999999999987654321100 01111 23344 89999999999999966 56
Q ss_pred cccCceecccCC
Q psy13409 316 ERETGLYYAKAD 327 (330)
Q Consensus 316 ~~~~G~~~~~~~ 327 (330)
+++||+.|...+
T Consensus 265 ~~itG~~i~vdG 276 (281)
T 3v2h_A 265 AQITGTHVSMDG 276 (281)
T ss_dssp GGCCSCEEEEST
T ss_pred CCCCCcEEEECC
Confidence 799999987654
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-41 Score=311.20 Aligned_cols=235 Identities=26% Similarity=0.301 Sum_probs=201.5
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
|.+++||++|||||++|||++++++|+++|++|++++|+.+.++++.+++ +.++.++.+|++|++++++++
T Consensus 3 m~~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~Dv~~~~~v~~~~ 73 (255)
T 4eso_A 3 MGNYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF---------GPRVHALRSDIADLNEIAVLG 73 (255)
T ss_dssp -CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---------GGGEEEEECCTTCHHHHHHHH
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---------CCcceEEEccCCCHHHHHHHH
Confidence 45799999999999999999999999999999999999998887776654 357899999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 91 QEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
+++.+.++++|++|||||..... .+.+.++|++.+++|+.+++++++.++|.|.+ .|+||++||.++..+.
T Consensus 74 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~--~g~iv~isS~~~~~~~----- 146 (255)
T 4eso_A 74 AAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIRE--GGSIVFTSSVADEGGH----- 146 (255)
T ss_dssp HHHHHHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE--EEEEEEECCGGGSSBC-----
T ss_pred HHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhc--CCEEEEECChhhcCCC-----
Confidence 99999999999999999987533 67899999999999999999999999998865 4899999999887764
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
++...|++||+|+++|+++++.|++
T Consensus 147 ---------~~~~~Y~asKaa~~~~~~~la~e~~---------------------------------------------- 171 (255)
T 4eso_A 147 ---------PGMSVYSASKAALVSFASVLAAELL---------------------------------------------- 171 (255)
T ss_dssp ---------TTBHHHHHHHHHHHHHHHHHHHHTG----------------------------------------------
T ss_pred ---------CCchHHHHHHHHHHHHHHHHHHHHh----------------------------------------------
Confidence 7889999999999999999999998
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCchhhH----HHH--HHhhhhhccChHHHHHHHHHhhccccccccCcee
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTA----WLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLY 322 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~ 322 (330)
+ .||+||+|+||+|+|++...........+ ... .++++ +.+|+|+|++++||+++ ++++||+.
T Consensus 172 ----~---~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~p~~r--~~~pedvA~~v~~L~s~--~~~itG~~ 240 (255)
T 4eso_A 172 ----P---RGIRVNSVSPGFIDTPTKGVAGITEAERAEFKTLGDNITPMKR--NGTADEVARAVLFLAFE--ATFTTGAK 240 (255)
T ss_dssp ----G---GTCEEEEEEECSBCCSSTTCTTSCHHHHHHHHHHHHHHSTTSS--CBCHHHHHHHHHHHHHT--CTTCCSCE
T ss_pred ----h---hCcEEEEEecCcccCcccccccCChhhHHHHHHHHhccCCCCC--CcCHHHHHHHHHHHcCc--CcCccCCE
Confidence 5 79999999999999998765322221111 111 24444 88999999999999975 67999999
Q ss_pred cccCC
Q psy13409 323 YAKAD 327 (330)
Q Consensus 323 ~~~~~ 327 (330)
|...+
T Consensus 241 i~vdG 245 (255)
T 4eso_A 241 LAVDG 245 (255)
T ss_dssp EEEST
T ss_pred EEECC
Confidence 87544
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-41 Score=306.79 Aligned_cols=233 Identities=24% Similarity=0.283 Sum_probs=205.2
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccC--CCHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDL--SSLKSVRKC 89 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dl--s~~~si~~l 89 (330)
..++||++|||||++|||++++++|+++|++|++++|+.+++++..+++.... ..++.++.+|+ +++++++++
T Consensus 8 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~ 82 (252)
T 3f1l_A 8 DLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEET-----GRQPQWFILDLLTCTSENCQQL 82 (252)
T ss_dssp TTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-----SCCCEEEECCTTTCCHHHHHHH
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-----CCCceEEEEecccCCHHHHHHH
Confidence 46899999999999999999999999999999999999999998888887652 44788999999 999999999
Q ss_pred HHHHHhcCCCeeEEEEcCCCCC---CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCC
Q psy13409 90 AQEILDNESAIHLLINNAGVMM---CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSM 166 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~---~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~ 166 (330)
++++.+.++++|+||||||... +..+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||..+..+.
T Consensus 83 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~--- 159 (252)
T 3f1l_A 83 AQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGR--- 159 (252)
T ss_dssp HHHHHHHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGTSCC---
T ss_pred HHHHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCEEEEECChhhccCC---
Confidence 9999999999999999999853 3467899999999999999999999999999998888999999999988774
Q ss_pred cccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccc
Q psy13409 167 HFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKN 246 (330)
Q Consensus 167 ~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (330)
++...|++||+|+++|++++|.|++
T Consensus 160 -----------~~~~~Y~asK~a~~~l~~~la~e~~-------------------------------------------- 184 (252)
T 3f1l_A 160 -----------ANWGAYAASKFATEGMMQVLADEYQ-------------------------------------------- 184 (252)
T ss_dssp -----------TTCHHHHHHHHHHHHHHHHHHHHTT--------------------------------------------
T ss_pred -----------CCCchhHHHHHHHHHHHHHHHHHhc--------------------------------------------
Confidence 6788999999999999999999998
Q ss_pred cccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 247 VLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 247 ~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+ . ||||+|+||+|+|++......... .. ++.+|+|+|+.++||+++ .++++||+.|...
T Consensus 185 ------~---~-irvn~v~PG~v~t~~~~~~~~~~~--------~~--~~~~p~dva~~~~~L~s~-~~~~itG~~i~vd 243 (252)
T 3f1l_A 185 ------Q---R-LRVNCINPGGTRTAMRASAFPTED--------PQ--KLKTPADIMPLYLWLMGD-DSRRKTGMTFDAQ 243 (252)
T ss_dssp ------T---T-CEEEEEECCSBSSHHHHHHCTTCC--------GG--GSBCTGGGHHHHHHHHSG-GGTTCCSCEEESS
T ss_pred ------C---C-cEEEEEecCcccCchhhhhCCccc--------hh--ccCCHHHHHHHHHHHcCc-cccCCCCCEEEeC
Confidence 4 4 999999999999998754332211 11 278999999999999966 5689999999876
Q ss_pred CC
Q psy13409 327 DL 328 (330)
Q Consensus 327 ~~ 328 (330)
+.
T Consensus 244 gG 245 (252)
T 3f1l_A 244 PG 245 (252)
T ss_dssp CC
T ss_pred CC
Confidence 53
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=315.75 Aligned_cols=241 Identities=23% Similarity=0.237 Sum_probs=204.0
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
.+++|++|||||++|||++++++|+++|++|++++|+.+++++..+++.. .+.++.++.+|++|++++++++++
T Consensus 21 m~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~------~~~~~~~~~~Dv~d~~~v~~~~~~ 94 (279)
T 3sju_A 21 MSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRA------AGHDVDGSSCDVTSTDEVHAAVAA 94 (279)
T ss_dssp ----CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHT------TTCCEEEEECCTTCHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh------cCCcEEEEECCCCCHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999888888865 367899999999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHH--HHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 93 ILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLP--RIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~--~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
+.+.++++|+||||||..... .+.+.++|++.+++|+.+++++++.++| .|.+++.|+||++||.++..+.
T Consensus 95 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS~~~~~~~----- 169 (279)
T 3sju_A 95 AVERFGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIASTGGKQGV----- 169 (279)
T ss_dssp HHHHHCSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECCGGGTSCC-----
T ss_pred HHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECChhhccCC-----
Confidence 999999999999999987543 6788999999999999999999999999 5777778999999999987774
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
+....|++||+|+++|++++|.|++
T Consensus 170 ---------~~~~~Y~asKaa~~~l~~~la~e~~---------------------------------------------- 194 (279)
T 3sju_A 170 ---------MYAAPYTASKHGVVGFTKSVGFELA---------------------------------------------- 194 (279)
T ss_dssp ---------TTCHHHHHHHHHHHHHHHHHHHHTG----------------------------------------------
T ss_pred ---------CCChhHHHHHHHHHHHHHHHHHHHH----------------------------------------------
Confidence 6788999999999999999999998
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCC---------CchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccC
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDS---------IIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERET 319 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~ 319 (330)
+ .||+||+|+||+|+|++.+.... .....+.........++.+|+|+|++++||+++ .++++|
T Consensus 195 ----~---~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~-~a~~it 266 (279)
T 3sju_A 195 ----K---TGITVNAVCPGYVETPMAERVREGYARHWGVTEQEVHERFNAKIPLGRYSTPEEVAGLVGYLVTD-AAASIT 266 (279)
T ss_dssp ----G---GTEEEEEEEESSBCSHHHHHHHHSCCSSSCCCHHHHHHHHHTTCTTSSCBCHHHHHHHHHHHTSS-GGGGCC
T ss_pred ----h---hCcEEEEEeeCcccchHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCc-cccCcC
Confidence 5 79999999999999998754321 111122222222223389999999999999966 568999
Q ss_pred ceecccCC
Q psy13409 320 GLYYAKAD 327 (330)
Q Consensus 320 G~~~~~~~ 327 (330)
|+.|...+
T Consensus 267 G~~i~vdG 274 (279)
T 3sju_A 267 AQALNVCG 274 (279)
T ss_dssp SCEEEEST
T ss_pred CcEEEECC
Confidence 99987654
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-41 Score=307.78 Aligned_cols=236 Identities=17% Similarity=0.124 Sum_probs=189.4
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
+++++||++|||||++|||++++++|+++|++|++++|+.++++++.+++++. +.++.++.+|++|++++++++
T Consensus 2 ~~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~~ 75 (252)
T 3h7a_A 2 SLTPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAA------GGRIVARSLDARNEDEVTAFL 75 (252)
T ss_dssp ---CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT------TCEEEEEECCTTCHHHHHHHH
T ss_pred CcCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEECcCCCHHHHHHHH
Confidence 45689999999999999999999999999999999999999999998888763 678999999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 91 QEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
+++.+. +++|+||||||+.... .+.+.++|++.+++|+.+++.+++.++|.|.+++.|+||++||.++..+.
T Consensus 76 ~~~~~~-g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----- 149 (252)
T 3h7a_A 76 NAADAH-APLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQGKIFFTGATASLRGG----- 149 (252)
T ss_dssp HHHHHH-SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTCCC-----
T ss_pred HHHHhh-CCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHHcCCC-----
Confidence 999998 9999999999987543 57899999999999999999999999999999888999999999988775
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
++...|++||+|+++|+++|+.|++
T Consensus 150 ---------~~~~~Y~asKaa~~~l~~~la~e~~---------------------------------------------- 174 (252)
T 3h7a_A 150 ---------SGFAAFASAKFGLRAVAQSMARELM---------------------------------------------- 174 (252)
T ss_dssp ---------TTCHHHHHHHHHHHHHHHHHHHHHG----------------------------------------------
T ss_pred ---------CCCccHHHHHHHHHHHHHHHHHHhh----------------------------------------------
Confidence 7788999999999999999999998
Q ss_pred cCCCCCCCCceeE-EEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecc
Q psy13409 249 FHPPGANITNVNT-YAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYA 324 (330)
Q Consensus 249 ~~~~~~~~~~i~v-~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~ 324 (330)
+ .||+| |+|+||+|+|++.+....... +......... +.+|+|+|++++||++++. +.++|+...
T Consensus 175 ----~---~gi~v~n~v~PG~v~T~~~~~~~~~~~--~~~~~~~~~~-~~~pedvA~~~~~l~s~~~-~~~~~~i~~ 240 (252)
T 3h7a_A 175 ----P---KNIHVAHLIIDSGVDTAWVRERREQMF--GKDALANPDL-LMPPAAVAGAYWQLYQQPK-SAWTFEMEI 240 (252)
T ss_dssp ----G---GTEEEEEEEEC------------------------------CCHHHHHHHHHHHHHCCG-GGBCSEEEE
T ss_pred ----h---cCCEEEEEecCCccCChhhhccchhhh--hhhhhcCCcc-CCCHHHHHHHHHHHHhCch-hcceeeEEe
Confidence 5 79999 999999999999876543221 1111111222 7899999999999998765 466776543
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-41 Score=314.04 Aligned_cols=245 Identities=21% Similarity=0.234 Sum_probs=203.9
Q ss_pred cCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEec-------------ChhHHHHHHHHHHHhhcccCCCCeEEE
Q psy13409 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACR-------------SLEKAETAADDIRTSLKDVKDAGEVVI 75 (330)
Q Consensus 9 ~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R-------------~~~~l~~~~~~l~~~~~~~~~~~~v~~ 75 (330)
.++.+++||++|||||++|||++++++|+++|++|++++| +.+++++..+.+.. .+.++.+
T Consensus 8 ~~~~~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 81 (280)
T 3pgx_A 8 GQAGSLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVED------QGRKALT 81 (280)
T ss_dssp ---CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHT------TTCCEEE
T ss_pred ccccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHh------cCCeEEE
Confidence 3456799999999999999999999999999999999998 67777777777665 3678999
Q ss_pred EEccCCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEE
Q psy13409 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARII 152 (330)
Q Consensus 76 i~~Dls~~~si~~l~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV 152 (330)
+.+|++|+++++++++++.+.++++|+||||||..... .+.+.++|++++++|+.+++++++.++|.|.+++ .|+||
T Consensus 82 ~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv 161 (280)
T 3pgx_A 82 RVLDVRDDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIV 161 (280)
T ss_dssp EECCTTCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEE
T ss_pred EEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 99999999999999999999999999999999987543 5789999999999999999999999999998876 79999
Q ss_pred EEcCCCcccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhh
Q psy13409 153 NLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLC 232 (330)
Q Consensus 153 ~iSS~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (330)
++||..+..+. +....|++||+|+++|+++++.|++
T Consensus 162 ~isS~~~~~~~--------------~~~~~Y~asKaa~~~~~~~la~e~~------------------------------ 197 (280)
T 3pgx_A 162 VVSSSAGLKAT--------------PGNGHYSASKHGLTALTNTLAIELG------------------------------ 197 (280)
T ss_dssp EECCGGGTSCC--------------TTBHHHHHHHHHHHHHHHHHHHHHG------------------------------
T ss_pred EEcchhhccCC--------------CCchhHHHHHHHHHHHHHHHHHHhh------------------------------
Confidence 99999988775 7788999999999999999999999
Q ss_pred cccCCCCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCC------CchhhHHH-HHHhhhhhccChHHHHHH
Q psy13409 233 DANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDS------IIPGTAWL-YQRVGGLFIKSPLQGAQT 305 (330)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~~e~a~~ 305 (330)
+ .||+||+|+||+|+|++.+.... .....+.. .......++.+|+|+|++
T Consensus 198 --------------------~---~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~p~dvA~~ 254 (280)
T 3pgx_A 198 --------------------E---YGIRVNSIHPYSVETPMIEPEAMMEIFARHPSFVHSFPPMPVQPNGFMTADEVADV 254 (280)
T ss_dssp --------------------G---GTEEEEEEEECSBCSTTCCHHHHHHHHHHCGGGGGGSCCBTTBCSSCBCHHHHHHH
T ss_pred --------------------h---cCeEEEEEeeCcccCcccchhhhhhhhhcCchhhhhhhhcccCCCCCCCHHHHHHH
Confidence 5 79999999999999998754110 00000000 000001137899999999
Q ss_pred HHHhhccccccccCceecccCC
Q psy13409 306 TLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 306 ~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
++||+++ .++++||+.|...+
T Consensus 255 v~~L~s~-~~~~itG~~i~vdG 275 (280)
T 3pgx_A 255 VAWLAGD-GSGTLTGTQIPVDK 275 (280)
T ss_dssp HHHHHSG-GGTTCSSCEEEEST
T ss_pred HHHHhCc-cccCCCCCEEEECC
Confidence 9999976 56799999987543
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-41 Score=309.43 Aligned_cols=242 Identities=22% Similarity=0.237 Sum_probs=203.7
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
+|+||++|||||++|||++++++|+++|++|++++|+.+++++..+++.. .+.++.++.+|+++++++++++++
T Consensus 3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~------~~~~~~~~~~Dv~~~~~v~~~~~~ 76 (257)
T 3imf_A 3 AMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQ------FPGQILTVQMDVRNTDDIQKMIEQ 76 (257)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC------STTCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh------cCCcEEEEEccCCCHHHHHHHHHH
Confidence 58999999999999999999999999999999999999998888777754 356899999999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhh-CCCeEEEEcCCCcccCCCCCccc
Q psy13409 93 ILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKS-APARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~-~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
+.+.++++|+||||||.... ..+.+.++|++.+++|+.++++++++++|.|.++ +.|+||++||..+..+.
T Consensus 77 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------ 150 (257)
T 3imf_A 77 IDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVATYAWDAG------ 150 (257)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGGSCC------
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECchhhccCC------
Confidence 99999999999999997653 3678999999999999999999999999999554 47999999999887774
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
++...|++||+|+++|++++|.|++.
T Consensus 151 --------~~~~~Y~asKaa~~~l~~~la~e~~~---------------------------------------------- 176 (257)
T 3imf_A 151 --------PGVIHSAAAKAGVLAMTKTLAVEWGR---------------------------------------------- 176 (257)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHHHH----------------------------------------------
T ss_pred --------CCcHHHHHHHHHHHHHHHHHHHHhcc----------------------------------------------
Confidence 67889999999999999999999962
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCC-chhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSI-IPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
+ .||+||+|+||+|+|++....... ....+.........++.+|+|+|++++||+++ .++++||+.|...+
T Consensus 177 ---~---~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~-~~~~itG~~i~vdG 248 (257)
T 3imf_A 177 ---K---YGIRVNAIAPGPIERTGGADKLWISEEMAKRTIQSVPLGRLGTPEEIAGLAYYLCSD-EAAYINGTCMTMDG 248 (257)
T ss_dssp ---H---HCCEEEEEEECCBSSCCCC-------CCSHHHHTTSTTCSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEEST
T ss_pred ---c---cCeEEEEEEECCCcCCcchhhcccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCc-hhcCccCCEEEECC
Confidence 2 599999999999999976543211 11222232222233389999999999999966 56799999987654
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-41 Score=305.59 Aligned_cols=240 Identities=24% Similarity=0.327 Sum_probs=209.6
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
+++++|++|||||++|||++++++|+++|++|++++|+.+.+++..+++++. +.++.++.+|++++++++++++
T Consensus 1 m~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~ 74 (247)
T 3lyl_A 1 MSLNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEK------GFKARGLVLNISDIESIQNFFA 74 (247)
T ss_dssp CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCceEEEEecCCCHHHHHHHHH
Confidence 3578999999999999999999999999999999999999988888888763 6789999999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 92 EILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
++.+.++++|++|||||..... .+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||..+..+.
T Consensus 75 ~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~------ 148 (247)
T 3lyl_A 75 EIKAENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWGRIISIGSVVGSAGN------ 148 (247)
T ss_dssp HHHHTTCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC------
T ss_pred HHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhccCC------
Confidence 9999999999999999987543 57789999999999999999999999999998888999999999887774
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
++...|++||+|++.|+++++.|++
T Consensus 149 --------~~~~~Y~~sK~a~~~~~~~la~e~~----------------------------------------------- 173 (247)
T 3lyl_A 149 --------PGQTNYCAAKAGVIGFSKSLAYEVA----------------------------------------------- 173 (247)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHHG-----------------------------------------------
T ss_pred --------CCcHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------------
Confidence 6788999999999999999999998
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
. .||+||+|+||+|+|++.+..... ............++.+|+|+|++++||+++ .++++||+.|...+
T Consensus 174 ---~---~gi~v~~v~PG~v~t~~~~~~~~~--~~~~~~~~~~~~~~~~~~dva~~i~~l~s~-~~~~~tG~~i~vdg 242 (247)
T 3lyl_A 174 ---S---RNITVNVVAPGFIATDMTDKLTDE--QKSFIATKIPSGQIGEPKDIAAAVAFLASE-EAKYITGQTLHVNG 242 (247)
T ss_dssp ---G---GTEEEEEEEECSBCCTTTTTSCHH--HHHHHHTTSTTCCCBCHHHHHHHHHHHHSG-GGTTCCSCEEEEST
T ss_pred ---H---cCeEEEEEeeCcEecccchhccHH--HHHHHhhcCCCCCCcCHHHHHHHHHHHhCC-CcCCccCCEEEECC
Confidence 5 799999999999999998765321 222222222333488999999999999966 56799999987643
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-41 Score=309.26 Aligned_cols=241 Identities=21% Similarity=0.276 Sum_probs=202.6
Q ss_pred cCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEec-ChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHH
Q psy13409 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACR-SLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVR 87 (330)
Q Consensus 9 ~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R-~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~ 87 (330)
..+.+++||++|||||++|||++++++|+++|++|+++++ +.+.++++.+++.. .+.++.++.+|++|+++++
T Consensus 11 ~~~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Dv~~~~~v~ 84 (270)
T 3is3_A 11 YIPGRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKA------LGSDAIAIKADIRQVPEIV 84 (270)
T ss_dssp CCTTCCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH------TTCCEEEEECCTTSHHHHH
T ss_pred cCCCCcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh------cCCcEEEEEcCCCCHHHHH
Confidence 4455799999999999999999999999999999999876 45667777777765 3678999999999999999
Q ss_pred HHHHHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCC-cccCCC
Q psy13409 88 KCAQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLA-HTWGDG 164 (330)
Q Consensus 88 ~l~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~-~~~~~~ 164 (330)
++++++.+.++++|+||||||..... .+.+.++|++.+++|+.+++++++.++|.|.+ +|+||++||.. +..+.
T Consensus 85 ~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~--~g~iv~isS~~~~~~~~- 161 (270)
T 3is3_A 85 KLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTE--GGRIVLTSSNTSKDFSV- 161 (270)
T ss_dssp HHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCT--TCEEEEECCTTTTTCCC-
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhc--CCeEEEEeCchhccCCC-
Confidence 99999999999999999999987543 67899999999999999999999999999966 58999999987 33443
Q ss_pred CCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccc
Q psy13409 165 SMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYC 244 (330)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
++...|++||+|+++|+++++.|++
T Consensus 162 -------------~~~~~Y~asKaa~~~~~~~la~e~~------------------------------------------ 186 (270)
T 3is3_A 162 -------------PKHSLYSGSKGAVDSFVRIFSKDCG------------------------------------------ 186 (270)
T ss_dssp -------------TTCHHHHHHHHHHHHHHHHHHHHHG------------------------------------------
T ss_pred -------------CCCchhHHHHHHHHHHHHHHHHHhc------------------------------------------
Confidence 6788999999999999999999998
Q ss_pred cccccCCCCCCCCceeEEEeeCcccccCcccccCC----------CchhhHHHH--HHhhhhhccChHHHHHHHHHhhcc
Q psy13409 245 KNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDS----------IIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALD 312 (330)
Q Consensus 245 ~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~----------~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~ 312 (330)
+ .||+||+|+||+|+|++.+.... ......... .++++ +.+|+|+|++++||+++
T Consensus 187 --------~---~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r--~~~p~dvA~~v~~L~s~ 253 (270)
T 3is3_A 187 --------D---KKITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMAAHASPLHR--NGWPQDVANVVGFLVSK 253 (270)
T ss_dssp --------G---GTCEEEEEEECSBCSTTHHHHGGGGSTTGGGSCHHHHHHHHHHHSTTCS--CBCHHHHHHHHHHHTSG
T ss_pred --------c---cCeEEEEEEeCCccChhhhhhhhhccccccccchHHHHHHHHhcCCCCC--CCCHHHHHHHHHHHcCC
Confidence 5 79999999999999998763211 111111122 24454 89999999999999965
Q ss_pred ccccccCceecccCC
Q psy13409 313 KKCERETGLYYAKAD 327 (330)
Q Consensus 313 ~~~~~~~G~~~~~~~ 327 (330)
.++++||+.|...+
T Consensus 254 -~~~~itG~~i~vdG 267 (270)
T 3is3_A 254 -EGEWVNGKVLTLDG 267 (270)
T ss_dssp -GGTTCCSCEEEEST
T ss_pred -ccCCccCcEEEeCC
Confidence 57899999987654
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-41 Score=315.61 Aligned_cols=245 Identities=14% Similarity=0.073 Sum_probs=204.1
Q ss_pred CcccCCCCCCCCEEEEEcCCC--chHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCH
Q psy13409 6 GKCTADTRLDGKTAIVTGSNT--GIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSL 83 (330)
Q Consensus 6 ~~~~~~~~~~gk~aLITGas~--gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~ 83 (330)
+.+..+++++||++|||||+| |||++++++|+++|++|++++|+.+..+...+..... ..+.++.||++|+
T Consensus 20 ~sm~~~~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~Dv~d~ 92 (296)
T 3k31_A 20 GSMRTGMLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESL-------GVKLTVPCDVSDA 92 (296)
T ss_dssp -CCCCCCTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHH-------TCCEEEECCTTCH
T ss_pred ccccchhccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc-------CCeEEEEcCCCCH
Confidence 345556779999999999986 9999999999999999999999976555544443332 3468899999999
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEcCCCCC------CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCC
Q psy13409 84 KSVRKCAQEILDNESAIHLLINNAGVMM------CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSL 157 (330)
Q Consensus 84 ~si~~l~~~i~~~~g~iDvlInnAG~~~------~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~ 157 (330)
++++++++++.+.++++|+||||||+.. +..+.+.++|++.+++|+.+++++++.++|.|.+ .|+||++||.
T Consensus 93 ~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~--~g~IV~isS~ 170 (296)
T 3k31_A 93 ESVDNMFKVLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTN--GGSILTLSYY 170 (296)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTT--CEEEEEEECG
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCEEEEEEeh
Confidence 9999999999999999999999999874 3367899999999999999999999999998865 6899999999
Q ss_pred CcccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCC
Q psy13409 158 AHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQ 237 (330)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (330)
.+..+. +....|++||+|+++|++++|.|++
T Consensus 171 ~~~~~~--------------~~~~~Y~asKaal~~l~~~la~e~~----------------------------------- 201 (296)
T 3k31_A 171 GAEKVV--------------PHYNVMGVCKAALEASVKYLAVDLG----------------------------------- 201 (296)
T ss_dssp GGTSCC--------------TTTTHHHHHHHHHHHHHHHHHHHHH-----------------------------------
T ss_pred hhccCC--------------CCchhhHHHHHHHHHHHHHHHHHHh-----------------------------------
Confidence 887774 6788999999999999999999999
Q ss_pred CCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccc
Q psy13409 238 TPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCER 317 (330)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~ 317 (330)
+ .||+||+|+||+|+|++...........++........++.+|+|+|++++||+++ .+++
T Consensus 202 ---------------~---~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~fL~s~-~a~~ 262 (296)
T 3k31_A 202 ---------------K---QQIRVNAISAGPVRTLASSGISDFHYILTWNKYNSPLRRNTTLDDVGGAALYLLSD-LGRG 262 (296)
T ss_dssp ---------------T---TTEEEEEEEECCCCCSSCCSCHHHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSG-GGTT
T ss_pred ---------------h---cCcEEEEEEECCCcCchhhcccchHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCC-ccCC
Confidence 6 79999999999999998766543222223333222223389999999999999965 5689
Q ss_pred cCceecccCC
Q psy13409 318 ETGLYYAKAD 327 (330)
Q Consensus 318 ~~G~~~~~~~ 327 (330)
+||+.|...+
T Consensus 263 itG~~i~vdG 272 (296)
T 3k31_A 263 TTGETVHVDC 272 (296)
T ss_dssp CCSCEEEEST
T ss_pred ccCCEEEECC
Confidence 9999987543
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-41 Score=312.50 Aligned_cols=241 Identities=24% Similarity=0.260 Sum_probs=193.9
Q ss_pred ccCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEE-ecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHH
Q psy13409 8 CTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMA-CRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSV 86 (330)
Q Consensus 8 ~~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~-~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si 86 (330)
.+..+.++||++|||||++|||++++++|+++|++|+++ .|+.+.++++.+++.. .+.++.++.+|+++++++
T Consensus 19 ~~~~m~~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Dl~~~~~v 92 (267)
T 3u5t_A 19 YFQSMMETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEA------AGGKALTAQADVSDPAAV 92 (267)
T ss_dssp --------CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHH------TTCCEEEEECCTTCHHHH
T ss_pred cccccccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh------cCCeEEEEEcCCCCHHHH
Confidence 344456789999999999999999999999999999987 5566677777777765 367899999999999999
Q ss_pred HHHHHHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCC
Q psy13409 87 RKCAQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDG 164 (330)
Q Consensus 87 ~~l~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~ 164 (330)
+++++++.+.++++|+||||||+.... .+.+.++|++.+++|+.+++++++.++|.|.+ +|+||++||..+..+.
T Consensus 93 ~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~--~g~iv~isS~~~~~~~- 169 (267)
T 3u5t_A 93 RRLFATAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRV--GGRIINMSTSQVGLLH- 169 (267)
T ss_dssp HHHHHHHHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEE--EEEEEEECCTHHHHCC-
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh--CCeEEEEeChhhccCC-
Confidence 999999999999999999999987533 67889999999999999999999999999865 4899999998887764
Q ss_pred CCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccc
Q psy13409 165 SMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYC 244 (330)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
+...+|++||+|+++|+++++.|++
T Consensus 170 -------------~~~~~Y~asKaa~~~l~~~la~e~~------------------------------------------ 194 (267)
T 3u5t_A 170 -------------PSYGIYAAAKAGVEAMTHVLSKELR------------------------------------------ 194 (267)
T ss_dssp -------------TTCHHHHHHHHHHHHHHHHHHHHTT------------------------------------------
T ss_pred -------------CCchHHHHHHHHHHHHHHHHHHHhh------------------------------------------
Confidence 6788999999999999999999998
Q ss_pred cccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCcee
Q psy13409 245 KNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLY 322 (330)
Q Consensus 245 ~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~ 322 (330)
+ .||+||+|+||+|+|++........ ..+... .++++ +.+|+|+|++++||+++ .++++||+.
T Consensus 195 --------~---~gI~vn~v~PG~v~T~~~~~~~~~~-~~~~~~~~~p~~r--~~~pedvA~~v~~L~s~-~~~~itG~~ 259 (267)
T 3u5t_A 195 --------G---RDITVNAVAPGPTATDLFLEGKSDE-VRDRFAKLAPLER--LGTPQDIAGAVAFLAGP-DGAWVNGQV 259 (267)
T ss_dssp --------T---SCCEEEEEEECCBC------------CHHHHHTSSTTCS--CBCHHHHHHHHHHHHST-TTTTCCSEE
T ss_pred --------h---hCCEEEEEEECCCcCccccccCCHH-HHHHHHhcCCCCC--CcCHHHHHHHHHHHhCc-cccCccCCE
Confidence 6 8999999999999999876533222 122222 24444 89999999999999965 567999999
Q ss_pred cccCC
Q psy13409 323 YAKAD 327 (330)
Q Consensus 323 ~~~~~ 327 (330)
|...+
T Consensus 260 i~vdG 264 (267)
T 3u5t_A 260 LRANG 264 (267)
T ss_dssp EEESS
T ss_pred EEeCC
Confidence 87543
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-41 Score=311.86 Aligned_cols=234 Identities=20% Similarity=0.199 Sum_probs=187.4
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
+++++||++|||||++|||++++++|+++|++|++++|+.+.+++..+++ +.++.++.+|+++++++++++
T Consensus 2 ~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~Dv~~~~~v~~~~ 72 (257)
T 3tpc_A 2 VMQLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAEL---------GAAVRFRNADVTNEADATAAL 72 (257)
T ss_dssp --CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC---------------------CEEEECCTTCHHHHHHHH
T ss_pred ccccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---------CCceEEEEccCCCHHHHHHHH
Confidence 45789999999999999999999999999999999999998877665554 356889999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCC------CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhh------CCCeEEEEcCCC
Q psy13409 91 QEILDNESAIHLLINNAGVMMCP------RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKS------APARIINLSSLA 158 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~------~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~------~~g~IV~iSS~~ 158 (330)
+++.+.++++|+||||||..... .+.+.++|++.+++|+.+++++++.++|.|.++ +.|+||++||..
T Consensus 73 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~ 152 (257)
T 3tpc_A 73 AFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIA 152 (257)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTH
T ss_pred HHHHHHcCCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechh
Confidence 99999999999999999987542 257789999999999999999999999999874 568999999999
Q ss_pred cccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCC
Q psy13409 159 HTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQT 238 (330)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (330)
+..+. ++...|++||+|+++|++++|.|++
T Consensus 153 ~~~~~--------------~~~~~Y~asKaa~~~~~~~la~e~~------------------------------------ 182 (257)
T 3tpc_A 153 AFDGQ--------------IGQAAYAASKGGVAALTLPAARELA------------------------------------ 182 (257)
T ss_dssp HHHCC--------------TTCHHHHHHHHHHHHHHHHHHHHHG------------------------------------
T ss_pred hccCC--------------CCCcchHHHHHHHHHHHHHHHHHHH------------------------------------
Confidence 88774 6788999999999999999999999
Q ss_pred CCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHh-hhhhccChHHHHHHHHHhhccccc
Q psy13409 239 PTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRV-GGLFIKSPLQGAQTTLYCALDKKC 315 (330)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~e~a~~~~~l~~~~~~ 315 (330)
+ .||+||+|+||+|+|++........ .+... .++ ++ +.+|+|+|++++||+++
T Consensus 183 --------------~---~gi~vn~v~PG~v~t~~~~~~~~~~--~~~~~~~~p~~~r--~~~~~dva~~v~~l~s~--- 238 (257)
T 3tpc_A 183 --------------R---FGIRVVTIAPGIFDTPMMAGMPQDV--QDALAASVPFPPR--LGRAEEYAALVKHICEN--- 238 (257)
T ss_dssp --------------G---GTEEEEEEEECCBSCC----------------CCSSSSCS--CBCHHHHHHHHHHHHHC---
T ss_pred --------------H---cCeEEEEEEeCCCCChhhccCCHHH--HHHHHhcCCCCCC--CCCHHHHHHHHHHHccc---
Confidence 5 7999999999999999987654321 11111 223 34 89999999999999964
Q ss_pred cccCceecccCC
Q psy13409 316 ERETGLYYAKAD 327 (330)
Q Consensus 316 ~~~~G~~~~~~~ 327 (330)
+++||+.|...+
T Consensus 239 ~~itG~~i~vdG 250 (257)
T 3tpc_A 239 TMLNGEVIRLDG 250 (257)
T ss_dssp TTCCSCEEEEST
T ss_pred CCcCCcEEEECC
Confidence 589999987654
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=304.62 Aligned_cols=244 Identities=24% Similarity=0.273 Sum_probs=206.5
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
..++++||++|||||++|||++++++|+++|++|++++|+.+++++..+++... +.++.++.+|++++++++++
T Consensus 3 ~~~~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~ 76 (260)
T 2ae2_A 3 GRWNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSK------GFKVEASVCDLSSRSERQEL 76 (260)
T ss_dssp CTTCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCEEEEEECCTTCHHHHHHH
T ss_pred CccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEcCCCCHHHHHHH
Confidence 345689999999999999999999999999999999999998888887777652 56889999999999999999
Q ss_pred HHHHHhcC-CCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCC
Q psy13409 90 AQEILDNE-SAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSM 166 (330)
Q Consensus 90 ~~~i~~~~-g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~ 166 (330)
++++.+.+ +++|++|||||.... ..+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||..+..+.
T Consensus 77 ~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--- 153 (260)
T 2ae2_A 77 MNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAV--- 153 (260)
T ss_dssp HHHHHHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTSCC---
T ss_pred HHHHHHHcCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCC---
Confidence 99999999 899999999998653 257788999999999999999999999999988878999999998877664
Q ss_pred cccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccc
Q psy13409 167 HFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKN 246 (330)
Q Consensus 167 ~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (330)
+....|++||++++.|+++++.|++
T Consensus 154 -----------~~~~~Y~~sK~a~~~~~~~la~e~~-------------------------------------------- 178 (260)
T 2ae2_A 154 -----------PYEAVYGATKGAMDQLTRCLAFEWA-------------------------------------------- 178 (260)
T ss_dssp -----------TTCHHHHHHHHHHHHHHHHHHHHTG--------------------------------------------
T ss_pred -----------CCcchHHHHHHHHHHHHHHHHHHHh--------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred cccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhH---HHHHHhhhhhccChHHHHHHHHHhhccccccccCceec
Q psy13409 247 VLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTA---WLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYY 323 (330)
Q Consensus 247 ~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~ 323 (330)
+ .||+||+|+||+|+|++...........+ .........++.+|+|+|++++||+++ .++++||+.|
T Consensus 179 ------~---~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~v~~l~s~-~~~~~tG~~~ 248 (260)
T 2ae2_A 179 ------K---DNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCALRRMGEPKELAAMVAFLCFP-AASYVTGQII 248 (260)
T ss_dssp ------G---GTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHTSTTCSCBCHHHHHHHHHHHHSG-GGTTCCSCEE
T ss_pred ------h---cCcEEEEEecCCCCCcchhhhccChhhHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCc-cccCCCCCEE
Confidence 5 79999999999999998765432221112 122212222388999999999999965 5679999988
Q ss_pred ccCC
Q psy13409 324 AKAD 327 (330)
Q Consensus 324 ~~~~ 327 (330)
...+
T Consensus 249 ~vdg 252 (260)
T 2ae2_A 249 YVDG 252 (260)
T ss_dssp EEST
T ss_pred EECC
Confidence 6543
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-41 Score=308.84 Aligned_cols=242 Identities=23% Similarity=0.276 Sum_probs=204.8
Q ss_pred ccCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecC-hhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHH
Q psy13409 8 CTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRS-LEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSV 86 (330)
Q Consensus 8 ~~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~-~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si 86 (330)
++..++++||++|||||++|||++++++|+++|++|++++++ .+.++++.++++. .+.++.++.+|++|++++
T Consensus 23 mm~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~Dv~d~~~v 96 (271)
T 3v2g_A 23 MMTSISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQ------AGGRAVAIRADNRDAEAI 96 (271)
T ss_dssp HHTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH------TTCCEEEEECCTTCHHHH
T ss_pred hccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh------cCCcEEEEECCCCCHHHH
Confidence 455568999999999999999999999999999999998665 5667777777765 367899999999999999
Q ss_pred HHHHHHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCC
Q psy13409 87 RKCAQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDG 164 (330)
Q Consensus 87 ~~l~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~ 164 (330)
+++++++.+.++++|+||||||..... .+.+.++|++.+++|+.+++++++.++|.|.+ .|+||++||..+..+.
T Consensus 97 ~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~--~g~iv~isS~~~~~~~- 173 (271)
T 3v2g_A 97 EQAIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGD--GGRIITIGSNLAELVP- 173 (271)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCT--TCEEEEECCGGGTCCC-
T ss_pred HHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhc--CCEEEEEeChhhccCC-
Confidence 999999999999999999999987533 67899999999999999999999999999864 6899999997765542
Q ss_pred CCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccc
Q psy13409 165 SMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYC 244 (330)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
.++...|++||+|+++|++++|.|++
T Consensus 174 ------------~~~~~~Y~asKaa~~~l~~~la~e~~------------------------------------------ 199 (271)
T 3v2g_A 174 ------------WPGISLYSASKAALAGLTKGLARDLG------------------------------------------ 199 (271)
T ss_dssp ------------STTCHHHHHHHHHHHHHHHHHHHHHG------------------------------------------
T ss_pred ------------CCCchHHHHHHHHHHHHHHHHHHHhh------------------------------------------
Confidence 36788999999999999999999999
Q ss_pred cccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecc
Q psy13409 245 KNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYA 324 (330)
Q Consensus 245 ~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~ 324 (330)
+ .||+||+|+||+|+|++...... ..+.........++.+|+|+|++++||+++ .++++||+.|.
T Consensus 200 --------~---~gIrvn~v~PG~v~T~~~~~~~~---~~~~~~~~~~~~r~~~pedvA~~v~fL~s~-~~~~itG~~i~ 264 (271)
T 3v2g_A 200 --------P---RGITVNIVHPGSTDTDMNPADGD---HAEAQRERIATGSYGEPQDIAGLVAWLAGP-QGKFVTGASLT 264 (271)
T ss_dssp --------G---GTCEEEEEEECSBCSSSSCSSCS---SHHHHHHTCTTSSCBCHHHHHHHHHHHHSG-GGTTCCSCEEE
T ss_pred --------h---hCeEEEEEecCCCcCCcccccch---hHHHHHhcCCCCCCCCHHHHHHHHHHHhCc-ccCCccCCEEE
Confidence 5 79999999999999998765332 222233333333389999999999999965 56899999987
Q ss_pred cCC
Q psy13409 325 KAD 327 (330)
Q Consensus 325 ~~~ 327 (330)
..+
T Consensus 265 vdG 267 (271)
T 3v2g_A 265 IDG 267 (271)
T ss_dssp EST
T ss_pred eCc
Confidence 644
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-40 Score=305.77 Aligned_cols=240 Identities=26% Similarity=0.275 Sum_probs=200.3
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
++++||++|||||++|||++++++|+++|++|++++|+.+++++..+++... +.++.++.+|++++++++++++
T Consensus 17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~ 90 (273)
T 1ae1_A 17 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREK------GLNVEGSVCDLLSRTERDKLMQ 90 (273)
T ss_dssp CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCceEEEECCCCCHHHHHHHHH
Confidence 4689999999999999999999999999999999999998888887777652 5678999999999999999999
Q ss_pred HHHhcC-CCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 92 EILDNE-SAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 92 ~i~~~~-g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
++.+.+ +++|+||||||.... ..+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||..+..+.
T Consensus 91 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~----- 165 (273)
T 1ae1_A 91 TVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSAL----- 165 (273)
T ss_dssp HHHHHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSCC-----
T ss_pred HHHHHcCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHhhcCCC-----
Confidence 999998 999999999998643 367789999999999999999999999999988878999999999887664
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
+....|++||+|++.|+++++.|++
T Consensus 166 ---------~~~~~Y~asK~a~~~~~~~la~e~~---------------------------------------------- 190 (273)
T 1ae1_A 166 ---------PSVSLYSASKGAINQMTKSLACEWA---------------------------------------------- 190 (273)
T ss_dssp ---------TTCHHHHHHHHHHHHHHHHHHHHHG----------------------------------------------
T ss_pred ---------CCcchhHHHHHHHHHHHHHHHHHHh----------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCC----CchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCcee
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDS----IIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLY 322 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~ 322 (330)
+ .||+||+|+||+|+|++...... .....+... .++++ +.+|+|+|++++||+++ .++++||+.
T Consensus 191 ----~---~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~p~~r--~~~p~dvA~~v~~l~s~-~~~~~tG~~ 260 (273)
T 1ae1_A 191 ----K---DNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTPMGR--AGKPQEVSALIAFLCFP-AASYITGQI 260 (273)
T ss_dssp ----G---GTEEEEEEEECSBC-------------CHHHHHHHHHHSTTCS--CBCHHHHHHHHHHHHSG-GGTTCCSCE
T ss_pred ----h---cCcEEEEEEeCCCcCchhhhhhhcccCcHHHHHHHHhcCCCCC--CcCHHHHHHHHHHHhCc-cccCcCCCE
Confidence 5 79999999999999998765322 111112222 23344 88999999999999965 567999999
Q ss_pred cccCC
Q psy13409 323 YAKAD 327 (330)
Q Consensus 323 ~~~~~ 327 (330)
|...+
T Consensus 261 i~vdG 265 (273)
T 1ae1_A 261 IWADG 265 (273)
T ss_dssp EEEST
T ss_pred EEECC
Confidence 86543
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-41 Score=305.57 Aligned_cols=234 Identities=21% Similarity=0.277 Sum_probs=197.5
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
++++++|++|||||++|||++++++|+++|++|++++|+.+++++..+++.+... ...++.++.+|+++++++++++
T Consensus 2 ~~~~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~ 78 (250)
T 3nyw_A 2 SLEKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNK---HVQEPIVLPLDITDCTKADTEI 78 (250)
T ss_dssp ---CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCT---TSCCCEEEECCTTCHHHHHHHH
T ss_pred cccCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcc---ccCcceEEeccCCCHHHHHHHH
Confidence 3568999999999999999999999999999999999999999998888876431 1267899999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCC-CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 91 QEILDNESAIHLLINNAGVMMCP-RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~-~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
+++.+.++++|+||||||..... .+.+.++|++.+++|+.+++.+++.++|.|.+++.|+||++||.++..+.
T Consensus 79 ~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~------ 152 (250)
T 3nyw_A 79 KDIHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKYGF------ 152 (250)
T ss_dssp HHHHHHHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC-------------
T ss_pred HHHHHhcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEccHHhcCCC------
Confidence 99999999999999999986532 36678999999999999999999999999998888999999999988753
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
++...|++||+|+++|+++++.|++
T Consensus 153 --------~~~~~Y~asKaa~~~l~~~la~e~~----------------------------------------------- 177 (250)
T 3nyw_A 153 --------ADGGIYGSTKFALLGLAESLYRELA----------------------------------------------- 177 (250)
T ss_dssp --------CCTTHHHHHHHHHHHHHHHHHHHHG-----------------------------------------------
T ss_pred --------CCCcchHHHHHHHHHHHHHHHHHhh-----------------------------------------------
Confidence 4578999999999999999999998
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecc
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYA 324 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~ 324 (330)
+ .||+||+|+||+|+|++.+...... +.++ +.+|+|+|++++||++++...+++|..|.
T Consensus 178 ---~---~gi~vn~v~PG~v~T~~~~~~~~~~--------~~~~--~~~p~dva~~v~~l~s~~~~~~~~~~~i~ 236 (250)
T 3nyw_A 178 ---P---LGIRVTTLCPGWVNTDMAKKAGTPF--------KDEE--MIQPDDLLNTIRCLLNLSENVCIKDIVFE 236 (250)
T ss_dssp ---G---GTEEEEEEEESSBCSHHHHHTTCCS--------CGGG--SBCHHHHHHHHHHHHTSCTTEECCEEEEE
T ss_pred ---h---cCcEEEEEecCcccCchhhhcCCCc--------cccc--CCCHHHHHHHHHHHHcCCCceEeeEEEEE
Confidence 5 7999999999999999887554321 1233 78999999999999988777677776653
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-41 Score=307.36 Aligned_cols=239 Identities=23% Similarity=0.238 Sum_probs=204.8
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
.+++||++|||||++|||++++++|+++|++|++++|+.+.++++.+++.. .+.++.++.+|++++++++++++
T Consensus 3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~------~~~~~~~~~~D~~~~~~~~~~~~ 76 (262)
T 1zem_A 3 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVRE------KGVEARSYVCDVTSEEAVIGTVD 76 (262)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHT------TTSCEEEEECCTTCHHHHHHHHH
T ss_pred cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh------cCCcEEEEEecCCCHHHHHHHHH
Confidence 468999999999999999999999999999999999999888887777754 25678999999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCC-C--CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 92 EILDNESAIHLLINNAGVM-M--CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~-~--~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
++.+.++++|+||||||.. . +..+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||..+..+.
T Consensus 77 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----- 151 (262)
T 1zem_A 77 SVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGP----- 151 (262)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSCC-----
T ss_pred HHHHHhCCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCC-----
Confidence 9999999999999999976 3 2367789999999999999999999999999988878999999998887764
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
+....|++||++++.|+++++.|++
T Consensus 152 ---------~~~~~Y~asK~a~~~~~~~la~e~~---------------------------------------------- 176 (262)
T 1zem_A 152 ---------PNMAAYGTSKGAIIALTETAALDLA---------------------------------------------- 176 (262)
T ss_dssp ---------TTBHHHHHHHHHHHHHHHHHHHHHG----------------------------------------------
T ss_pred ---------CCCchHHHHHHHHHHHHHHHHHHHH----------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred cCCCCCCCCceeEEEeeCcccccCccccc------------CC-Cch-hhHHHH--HHhhhhhccChHHHHHHHHHhhcc
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHF------------DS-IIP-GTAWLY--QRVGGLFIKSPLQGAQTTLYCALD 312 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~------------~~-~~~-~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~ 312 (330)
+ .||+||+|+||+|+|++.... .. ... ..+... .++++ +.+|+|+|++++||+++
T Consensus 177 ----~---~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r--~~~p~dvA~~v~~l~s~ 247 (262)
T 1zem_A 177 ----P---YNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVPMRR--YGDINEIPGVVAFLLGD 247 (262)
T ss_dssp ----G---GTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHHHHHTSTTSS--CBCGGGSHHHHHHHHSG
T ss_pred ----h---hCeEEEEEecCCcCcchhhhhccchhhhccccccccCHHHHHHHHHhcCCCCC--CcCHHHHHHHHHHHcCc
Confidence 5 799999999999999986542 11 111 112122 23444 89999999999999976
Q ss_pred ccccccCceecccC
Q psy13409 313 KKCERETGLYYAKA 326 (330)
Q Consensus 313 ~~~~~~~G~~~~~~ 326 (330)
.++++||+.|...
T Consensus 248 -~~~~itG~~i~vd 260 (262)
T 1zem_A 248 -DSSFMTGVNLPIA 260 (262)
T ss_dssp -GGTTCCSCEEEES
T ss_pred -hhcCcCCcEEecC
Confidence 5679999998643
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=305.11 Aligned_cols=245 Identities=20% Similarity=0.169 Sum_probs=202.5
Q ss_pred cCCCCCCCCEEEEEcCC-CchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHH
Q psy13409 9 TADTRLDGKTAIVTGSN-TGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVR 87 (330)
Q Consensus 9 ~~~~~~~gk~aLITGas-~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~ 87 (330)
..+.+++||++|||||+ +|||++++++|+++|++|++++|+.+++++..+++.+. .+.++.++.+|++++++++
T Consensus 15 ~~~~~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~~Dl~~~~~v~ 89 (266)
T 3o38_A 15 DGHGLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADL-----GLGRVEAVVCDVTSTEAVD 89 (266)
T ss_dssp CCCSTTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT-----CSSCEEEEECCTTCHHHHH
T ss_pred ccccCCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhc-----CCCceEEEEeCCCCHHHHH
Confidence 34456899999999997 59999999999999999999999999998888888654 3578999999999999999
Q ss_pred HHHHHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhh-CCCeEEEEcCCCcccCCC
Q psy13409 88 KCAQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKS-APARIINLSSLAHTWGDG 164 (330)
Q Consensus 88 ~l~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~-~~g~IV~iSS~~~~~~~~ 164 (330)
++++++.+.++++|+||||||+.... .+.+.++|++.+++|+.+++++++.++|.|.++ +.++||++||..+..+.
T Consensus 90 ~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~- 168 (266)
T 3o38_A 90 ALITQTVEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWRAQ- 168 (266)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGTCCC-
T ss_pred HHHHHHHHHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHcCCC-
Confidence 99999999999999999999987543 578899999999999999999999999999886 56899999999887774
Q ss_pred CCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccc
Q psy13409 165 SMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYC 244 (330)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
++...|++||+|+++|+++++.|++
T Consensus 169 -------------~~~~~Y~~sKaa~~~~~~~la~e~~------------------------------------------ 193 (266)
T 3o38_A 169 -------------HSQSHYAAAKAGVMALTRCSAIEAV------------------------------------------ 193 (266)
T ss_dssp -------------TTCHHHHHHHHHHHHHHHHHHHHHG------------------------------------------
T ss_pred -------------CCCchHHHHHHHHHHHHHHHHHHHH------------------------------------------
Confidence 6788999999999999999999998
Q ss_pred cccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecc
Q psy13409 245 KNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYA 324 (330)
Q Consensus 245 ~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~ 324 (330)
. .||+||+|+||+|+|++.+....... .+.........++.+|+|+|++++||+++ .++++||++|.
T Consensus 194 --------~---~gi~v~~v~PG~v~t~~~~~~~~~~~-~~~~~~~~~~~r~~~~~dva~~i~~l~s~-~~~~~tG~~i~ 260 (266)
T 3o38_A 194 --------E---FGVRINAVSPSIARHKFLEKTSSSEL-LDRLASDEAFGRAAEPWEVAATIAFLASD-YSSYMTGEVVS 260 (266)
T ss_dssp --------G---GTEEEEEEEECCCCC------------------CCTTSSCCCHHHHHHHHHHHHSG-GGTTCCSCEEE
T ss_pred --------H---cCcEEEEEeCCcccchhhhccCcHHH-HHHHHhcCCcCCCCCHHHHHHHHHHHcCc-cccCccCCEEE
Confidence 5 79999999999999999876543221 22222222223388999999999999966 56799999987
Q ss_pred cCC
Q psy13409 325 KAD 327 (330)
Q Consensus 325 ~~~ 327 (330)
..+
T Consensus 261 vdg 263 (266)
T 3o38_A 261 VSS 263 (266)
T ss_dssp ESS
T ss_pred EcC
Confidence 654
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-40 Score=305.19 Aligned_cols=240 Identities=22% Similarity=0.286 Sum_probs=202.7
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
++++++||++|||||++|||++++++|+++|++|++++|+.+.+++..+++.... .+..+.++.+|++++++++++
T Consensus 4 m~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~~D~~~~~~~~~~ 79 (267)
T 3t4x_A 4 MHMQLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQY----PDAILQPVVADLGTEQGCQDV 79 (267)
T ss_dssp CCCCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHC----TTCEEEEEECCTTSHHHHHHH
T ss_pred cccccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhC----CCceEEEEecCCCCHHHHHHH
Confidence 3467999999999999999999999999999999999999999999888887653 356788999999999988776
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCc
Q psy13409 90 AQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~ 167 (330)
++ .++++|++|||||...+. .+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||..+..+.
T Consensus 80 ~~----~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---- 151 (267)
T 3t4x_A 80 IE----KYPKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKEGRVIFIASEAAIMPS---- 151 (267)
T ss_dssp HH----HCCCCSEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTEEEEEEECCGGGTSCC----
T ss_pred HH----hcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEEcchhhccCC----
Confidence 54 478999999999987543 57889999999999999999999999999998888999999999987774
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
+....|++||+|+++|++++|.|++
T Consensus 152 ----------~~~~~Y~asKaa~~~l~~~la~e~~--------------------------------------------- 176 (267)
T 3t4x_A 152 ----------QEMAHYSATKTMQLSLSRSLAELTT--------------------------------------------- 176 (267)
T ss_dssp ----------TTCHHHHHHHHHHHHHHHHHHHHTT---------------------------------------------
T ss_pred ----------CcchHHHHHHHHHHHHHHHHHHHhC---------------------------------------------
Confidence 7788999999999999999999998
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCC----C-----chhhH-HHHH-----HhhhhhccChHHHHHHHHHhhcc
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDS----I-----IPGTA-WLYQ-----RVGGLFIKSPLQGAQTTLYCALD 312 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~----~-----~~~~~-~~~~-----~~~~~~~~~~~e~a~~~~~l~~~ 312 (330)
+ .||+||+|+||+|+|++...... . ..... .... ++++ +.+|+|+|++++||+++
T Consensus 177 -----~---~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r--~~~pedvA~~v~fL~s~ 246 (267)
T 3t4x_A 177 -----G---TNVTVNTIMPGSTLTEGVETMLNSLYPNEQLTIEEAEKRFMKENRPTSIIQR--LIRPEEIAHLVTFLSSP 246 (267)
T ss_dssp -----T---SEEEEEEEEECCBCCHHHHHHHHHSSTTSCCCHHHHHHHHHHHHCTTCSSCS--CBCTHHHHHHHHHHHSG
T ss_pred -----C---CCeEEEEEeCCeecCccHHHHHhhcCcccCCCHHHHHHHHhhccCCcccccC--ccCHHHHHHHHHHHcCc
Confidence 6 89999999999999997643211 0 01111 1111 1234 89999999999999966
Q ss_pred ccccccCceecccCC
Q psy13409 313 KKCERETGLYYAKAD 327 (330)
Q Consensus 313 ~~~~~~~G~~~~~~~ 327 (330)
.++++||+.|...+
T Consensus 247 -~~~~itG~~i~vdG 260 (267)
T 3t4x_A 247 -LSSAINGSALRIDG 260 (267)
T ss_dssp -GGTTCCSCEEEEST
T ss_pred -cccCccCCeEEECC
Confidence 67899999987654
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-41 Score=302.47 Aligned_cols=228 Identities=18% Similarity=0.178 Sum_probs=194.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
|++|++|||||++|||++++++|+++|++|++++|+.+++++..+++. .++.++.+|++++++++++++++
T Consensus 1 Ms~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~D~~~~~~v~~~~~~~ 71 (235)
T 3l6e_A 1 MSLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLG---------NAVIGIVADLAHHEDVDVAFAAA 71 (235)
T ss_dssp --CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG---------GGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc---------CCceEEECCCCCHHHHHHHHHHH
Confidence 468999999999999999999999999999999999988887776652 25899999999999999999999
Q ss_pred HhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccc
Q psy13409 94 LDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDI 171 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~ 171 (330)
.+.++++|+||||||.... ..+.+.++|++.+++|+.+++++++.++|.|.+++ ++||++||..+..+.
T Consensus 72 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~iv~isS~~~~~~~-------- 142 (235)
T 3l6e_A 72 VEWGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERG-GVLANVLSSAAQVGK-------- 142 (235)
T ss_dssp HHHHCSCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-EEEEEECCEECCSSC--------
T ss_pred HHhcCCCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEEEEEeCHHhcCCC--------
Confidence 9999999999999998653 25789999999999999999999999999998765 599999999888775
Q ss_pred ccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCC
Q psy13409 172 NLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHP 251 (330)
Q Consensus 172 ~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (330)
+....|++||+|+++|+++++.|++
T Consensus 143 ------~~~~~Y~asKaa~~~~~~~la~e~~------------------------------------------------- 167 (235)
T 3l6e_A 143 ------ANESLYCASKWGMRGFLESLRAELK------------------------------------------------- 167 (235)
T ss_dssp ------SSHHHHHHHHHHHHHHHHHHHHHTT-------------------------------------------------
T ss_pred ------CCCcHHHHHHHHHHHHHHHHHHHhh-------------------------------------------------
Confidence 6788999999999999999999998
Q ss_pred CCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCCCC
Q psy13409 252 PGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKADLP 329 (330)
Q Consensus 252 ~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~~~ 329 (330)
+ .||+||+|+||+|+|++....... +.+ ++.+|+|+|+.++|+++++...+++|-.+.....+
T Consensus 168 -~---~gi~v~~v~PG~v~T~~~~~~~~~---------~~~--~~~~pedvA~~v~~l~~~~~~~~i~~i~~~~~~~~ 230 (235)
T 3l6e_A 168 -D---SPLRLVNLYPSGIRSEFWDNTDHV---------DPS--GFMTPEDAAAYMLDALEARSSCHVTDLFIGRNEGH 230 (235)
T ss_dssp -T---SSEEEEEEEEEEECCCC----------------------CBCHHHHHHHHHHHTCCCSSEEEEEEEEEECCC-
T ss_pred -c---cCCEEEEEeCCCccCcchhccCCC---------CCc--CCCCHHHHHHHHHHHHhCCCCcceeeEEEecCCCC
Confidence 6 899999999999999987654321 122 37899999999999998788889999988776654
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-41 Score=308.62 Aligned_cols=237 Identities=25% Similarity=0.294 Sum_probs=192.7
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEE-ecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMA-CRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~-~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
+++++||++|||||++|||++++++|+++|++|+++ .|+.+.+++..+++.+ .+.++.++.+|++|+++++++
T Consensus 3 ~~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Dv~~~~~v~~~ 76 (259)
T 3edm_A 3 LQRFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEK------LGRSALAIKADLTNAAEVEAA 76 (259)
T ss_dssp -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHT------TTSCCEEEECCTTCHHHHHHH
T ss_pred ccCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh------cCCceEEEEcCCCCHHHHHHH
Confidence 457899999999999999999999999999999998 6667777777777765 366789999999999999999
Q ss_pred HHHHHhcCCCeeEEEEcCCCCC---CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcc-cCCCC
Q psy13409 90 AQEILDNESAIHLLINNAGVMM---CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHT-WGDGS 165 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~---~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~-~~~~~ 165 (330)
++++.+.++++|+||||||... +..+.+.++|++.+++|+.+++++++.++|.|.+ .|+||++||..+. .+.
T Consensus 77 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~--~g~iv~isS~~~~~~~~-- 152 (259)
T 3edm_A 77 ISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAK--GGAIVTFSSQAGRDGGG-- 152 (259)
T ss_dssp HHHHHHHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE--EEEEEEECCHHHHHCCS--
T ss_pred HHHHHHHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCEEEEEcCHHhccCCC--
Confidence 9999999999999999999763 2368899999999999999999999999999866 5899999998876 443
Q ss_pred CcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccc
Q psy13409 166 MHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCK 245 (330)
Q Consensus 166 ~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (330)
++...|++||+|+++|++++|.|++
T Consensus 153 ------------~~~~~Y~asKaa~~~l~~~la~e~~------------------------------------------- 177 (259)
T 3edm_A 153 ------------PGALAYATSKGAVMTFTRGLAKEVG------------------------------------------- 177 (259)
T ss_dssp ------------TTCHHHHHHHHHHHHHHHHHHHHHT-------------------------------------------
T ss_pred ------------CCcHHHHHHHHHHHHHHHHHHHHHC-------------------------------------------
Confidence 6788999999999999999999998
Q ss_pred ccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCceec
Q psy13409 246 NVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYY 323 (330)
Q Consensus 246 ~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~ 323 (330)
+ +|+||+|+||+|+|++.+...... ..+... .++++ +.+|+|+|++++||+++ .++++||++|
T Consensus 178 -------~----~I~vn~v~PG~v~T~~~~~~~~~~-~~~~~~~~~p~~r--~~~pedva~~v~~L~s~-~~~~itG~~i 242 (259)
T 3edm_A 178 -------P----KIRVNAVCPGMISTTFHDTFTKPE-VRERVAGATSLKR--EGSSEDVAGLVAFLASD-DAAYVTGACY 242 (259)
T ss_dssp -------T----TCEEEEEEECCBCC-----------------------C--CBCHHHHHHHHHHHHSG-GGTTCCSCEE
T ss_pred -------C----CCEEEEEEECCCcCcccccccChH-HHHHHHhcCCCCC--CcCHHHHHHHHHHHcCc-cccCccCCEE
Confidence 4 499999999999999987654321 122222 34555 89999999999999966 5679999999
Q ss_pred ccCC
Q psy13409 324 AKAD 327 (330)
Q Consensus 324 ~~~~ 327 (330)
...+
T Consensus 243 ~vdG 246 (259)
T 3edm_A 243 DING 246 (259)
T ss_dssp EESB
T ss_pred EECC
Confidence 7654
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=302.25 Aligned_cols=239 Identities=25% Similarity=0.370 Sum_probs=204.1
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEec-ChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACR-SLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R-~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
+|+||++|||||++|||++++++|+++|++|++++| +.+++++..++++.. +.++.++.+|++|+++++++++
T Consensus 1 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~ 74 (246)
T 2uvd_A 1 MLKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKL------GSDAIAVRADVANAEDVTNMVK 74 (246)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc------CCcEEEEEcCCCCHHHHHHHHH
Confidence 368999999999999999999999999999999999 888888777777652 5678999999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 92 EILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
++.+.++++|+||||||.... ..+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||..+..+.
T Consensus 75 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------ 148 (246)
T 2uvd_A 75 QTVDVFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIVNIASVVGVTGN------ 148 (246)
T ss_dssp HHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC------
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCHHhcCCC------
Confidence 999999999999999998653 257789999999999999999999999999988878999999999887764
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
+....|++||+++++|+++++.|++
T Consensus 149 --------~~~~~Y~asK~a~~~~~~~la~e~~----------------------------------------------- 173 (246)
T 2uvd_A 149 --------PGQANYVAAKAGVIGLTKTSAKELA----------------------------------------------- 173 (246)
T ss_dssp --------TTBHHHHHHHHHHHHHHHHHHHHHG-----------------------------------------------
T ss_pred --------CCCchHHHHHHHHHHHHHHHHHHhh-----------------------------------------------
Confidence 6788999999999999999999998
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
+ .||+||+|+||+|+|++...... .............++.+|+|+|+.++||+++ .++++||+.|...+
T Consensus 174 ---~---~gi~v~~v~Pg~v~t~~~~~~~~--~~~~~~~~~~p~~~~~~~~dvA~~~~~l~s~-~~~~~tG~~~~vdg 242 (246)
T 2uvd_A 174 ---S---RNITVNAIAPGFIATDMTDVLDE--NIKAEMLKLIPAAQFGEAQDIANAVTFFASD-QSKYITGQTLNVDG 242 (246)
T ss_dssp ---G---GTEEEEEEEECSBGGGCSSCCCT--THHHHHHHTCTTCSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEEST
T ss_pred ---h---cCeEEEEEEeccccCcchhhcCH--HHHHHHHhcCCCCCCcCHHHHHHHHHHHcCc-hhcCCCCCEEEECc
Confidence 5 79999999999999998765432 1122222222223388999999999999965 56799999987543
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=307.95 Aligned_cols=231 Identities=22% Similarity=0.297 Sum_probs=195.3
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhH-------HHHHHHHHHHhhcccCCCCeEEEEEccCCCHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEK-------AETAADDIRTSLKDVKDAGEVVIRQLDLSSLK 84 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~-------l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~ 84 (330)
++++||++|||||++|||++++++|+++|++|++++|+.++ +++..+++... +.++.++.+|+++++
T Consensus 2 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~ 75 (274)
T 3e03_A 2 LTLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAA------GGQGLALKCDIREED 75 (274)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHH------TSEEEEEECCTTCHH
T ss_pred CCCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhc------CCeEEEEeCCCCCHH
Confidence 57899999999999999999999999999999999998753 55666666553 678999999999999
Q ss_pred HHHHHHHHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccC
Q psy13409 85 SVRKCAQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWG 162 (330)
Q Consensus 85 si~~l~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~ 162 (330)
+++++++++.+.++++|+||||||+.... .+.+.++|++++++|+.+++++++.++|.|++++.|+||++||..+..+
T Consensus 76 ~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~ 155 (274)
T 3e03_A 76 QVRAAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNP 155 (274)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCCCCH
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHhcCC
Confidence 99999999999999999999999987543 6788999999999999999999999999999888899999999887655
Q ss_pred CCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcc
Q psy13409 163 DGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNH 242 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (330)
. ..+....|++||+|+++|++++|.|++
T Consensus 156 ~------------~~~~~~~Y~asKaal~~l~~~la~e~~---------------------------------------- 183 (274)
T 3e03_A 156 A------------WWGAHTGYTLAKMGMSLVTLGLAAEFG---------------------------------------- 183 (274)
T ss_dssp H------------HHHHCHHHHHHHHHHHHHHHHHHHHHG----------------------------------------
T ss_pred C------------CCCCCchHHHHHHHHHHHHHHHHHHhh----------------------------------------
Confidence 1 015677899999999999999999999
Q ss_pred cccccccCCCCCCCCceeEEEeeCc-ccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCce
Q psy13409 243 YCKNVLFHPPGANITNVNTYAVHPG-VVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGL 321 (330)
Q Consensus 243 ~~~~~~~~~~~~~~~~i~v~~v~pG-~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~ 321 (330)
+ .||+||+|+|| +++|++.+...... ..+ +.+|+|+|++++||+++ .++++||+
T Consensus 184 ----------~---~gI~vn~v~PG~~v~T~~~~~~~~~~---------~~~--~~~pedvA~~v~~l~s~-~~~~itG~ 238 (274)
T 3e03_A 184 ----------P---QGVAINALWPRTVIATDAINMLPGVD---------AAA--CRRPEIMADAAHAVLTR-EAAGFHGQ 238 (274)
T ss_dssp ----------G---GTCEEEEEECSBCBCC-------CCC---------GGG--SBCTHHHHHHHHHHHTS-CCTTCCSC
T ss_pred ----------h---cCEEEEEEECCcccccchhhhccccc---------ccc--cCCHHHHHHHHHHHhCc-cccccCCe
Confidence 5 79999999999 69999884433211 222 78999999999999966 56899999
Q ss_pred eccc
Q psy13409 322 YYAK 325 (330)
Q Consensus 322 ~~~~ 325 (330)
+|.+
T Consensus 239 ~i~~ 242 (274)
T 3e03_A 239 FLID 242 (274)
T ss_dssp EEEH
T ss_pred EEEc
Confidence 9843
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-41 Score=312.94 Aligned_cols=243 Identities=19% Similarity=0.172 Sum_probs=199.5
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
+.+++||++|||||++|||++++++|+++|++|++++|+.+.+++..+++.... +..+.++.+|++|++++++++
T Consensus 28 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~ 102 (281)
T 4dry_A 28 KGSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRT-----GNIVRAVVCDVGDPDQVAALF 102 (281)
T ss_dssp ------CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-----SSCEEEEECCTTCHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-----CCeEEEEEcCCCCHHHHHHHH
Confidence 346899999999999999999999999999999999999999988888887642 345689999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCC---CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC--CCeEEEEcCCCcccCCCC
Q psy13409 91 QEILDNESAIHLLINNAGVMMC---PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA--PARIINLSSLAHTWGDGS 165 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~---~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~--~g~IV~iSS~~~~~~~~~ 165 (330)
+++.+.++++|+||||||.... ..+.+.++|++.+++|+.+++++++.++|.|.+++ .|+||++||..+..+.
T Consensus 103 ~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~-- 180 (281)
T 4dry_A 103 AAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQTPR-- 180 (281)
T ss_dssp HHHHHHHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGTCCC--
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhCCCC--
Confidence 9999999999999999998643 36789999999999999999999999999998875 6899999999987774
Q ss_pred CcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccc
Q psy13409 166 MHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCK 245 (330)
Q Consensus 166 ~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (330)
++...|++||+|+++|++++|.|++
T Consensus 181 ------------~~~~~Y~asKaa~~~l~~~la~e~~------------------------------------------- 205 (281)
T 4dry_A 181 ------------PNSAPYTATKHAITGLTKSTALDGR------------------------------------------- 205 (281)
T ss_dssp ------------TTCHHHHHHHHHHHHHHHHHHHHHG-------------------------------------------
T ss_pred ------------CCChhHHHHHHHHHHHHHHHHHHhc-------------------------------------------
Confidence 7789999999999999999999998
Q ss_pred ccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceeccc
Q psy13409 246 NVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAK 325 (330)
Q Consensus 246 ~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~ 325 (330)
. .||+||+|+||+|+|++.+......... ....+.++ +.+|+|+|++++||++.+....+++..+..
T Consensus 206 -------~---~gI~vn~v~PG~v~T~~~~~~~~~~~~~-~~~~~~~~--~~~pedvA~~v~fL~s~~~~~~i~~~~i~p 272 (281)
T 4dry_A 206 -------M---HDIACGQIDIGNAATDMTARMSTGVLQA-NGEVAAEP--TIPIEHIAEAVVYMASLPLSANVLTMTVMA 272 (281)
T ss_dssp -------G---GTEEEEEEEEECBCC-------CEEECT-TSCEEECC--CBCHHHHHHHHHHHHHSCTTEEEEEEEEEE
T ss_pred -------c---cCeEEEEEEECcCcChhhhhhcchhhhh-hhcccccC--CCCHHHHHHHHHHHhCCCccCccccEEEEe
Confidence 5 7999999999999999987654321110 00122333 789999999999999988887888887765
Q ss_pred CCC
Q psy13409 326 ADL 328 (330)
Q Consensus 326 ~~~ 328 (330)
...
T Consensus 273 ~~~ 275 (281)
T 4dry_A 273 TRM 275 (281)
T ss_dssp TTS
T ss_pred ccc
Confidence 544
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-40 Score=305.13 Aligned_cols=245 Identities=22% Similarity=0.269 Sum_probs=204.5
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
...++++|++|||||++|||+++++.|+++|++|++++|+.+++++..+++.+. .+.++.++.+|++++++++++
T Consensus 15 ~~~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~~Dl~~~~~v~~~ 89 (267)
T 1vl8_A 15 EVFDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEK-----YGVETMAFRCDVSNYEEVKKL 89 (267)
T ss_dssp --CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH-----HCCCEEEEECCTTCHHHHHHH
T ss_pred CCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh-----cCCeEEEEEcCCCCHHHHHHH
Confidence 345689999999999999999999999999999999999998888877777332 256788999999999999999
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCC-cccCCCCC
Q psy13409 90 AQEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLA-HTWGDGSM 166 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~-~~~~~~~~ 166 (330)
++++.+.++++|+||||||.... ..+.+.++|++++++|+.+++++++.++|.|.+++.|+||++||.. +..+.
T Consensus 90 ~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~--- 166 (267)
T 1vl8_A 90 LEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVTM--- 166 (267)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCCCS---
T ss_pred HHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCcchhccCC---
Confidence 99999999999999999998653 2577889999999999999999999999999887789999999987 66553
Q ss_pred cccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccc
Q psy13409 167 HFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKN 246 (330)
Q Consensus 167 ~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (330)
+....|++||+++++|+++++.|++
T Consensus 167 -----------~~~~~Y~asK~a~~~~~~~la~e~~-------------------------------------------- 191 (267)
T 1vl8_A 167 -----------PNISAYAASKGGVASLTKALAKEWG-------------------------------------------- 191 (267)
T ss_dssp -----------SSCHHHHHHHHHHHHHHHHHHHHHG--------------------------------------------
T ss_pred -----------CCChhHHHHHHHHHHHHHHHHHHhc--------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred cccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 247 VLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 247 ~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+ .||+||+|+||+|+|++.....................++.+|+|+|++++||+++ .++++||+.|...
T Consensus 192 ------~---~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~~~~~p~dvA~~v~~l~s~-~~~~itG~~i~vd 261 (267)
T 1vl8_A 192 ------R---YGIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLKRIPLGRTGVPEDLKGVAVFLASE-EAKYVTGQIIFVD 261 (267)
T ss_dssp ------G---GTCEEEEEEECCBCSTTTHHHHTCHHHHHHHHHTCTTSSCBCGGGGHHHHHHHHSG-GGTTCCSCEEEES
T ss_pred ------c---cCeEEEEEEeccCccccccccccChHHHHHHHhhCCCCCCcCHHHHHHHHHHHcCc-cccCCcCCeEEEC
Confidence 5 79999999999999998764322111112221212222388999999999999966 5679999998654
Q ss_pred C
Q psy13409 327 D 327 (330)
Q Consensus 327 ~ 327 (330)
+
T Consensus 262 G 262 (267)
T 1vl8_A 262 G 262 (267)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-41 Score=312.39 Aligned_cols=239 Identities=17% Similarity=0.176 Sum_probs=194.9
Q ss_pred cCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecC---hhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHH
Q psy13409 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRS---LEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKS 85 (330)
Q Consensus 9 ~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~---~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~s 85 (330)
+.+++++||++|||||++|||++++++|+++|++|++++|+ .+.++++.+++.. .+.++.++.+|++|+++
T Consensus 4 ~~~~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~------~~~~~~~~~~Dv~d~~~ 77 (262)
T 3ksu_A 4 TKYHDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELED------QGAKVALYQSDLSNEEE 77 (262)
T ss_dssp CCCSCCTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHT------TTCEEEEEECCCCSHHH
T ss_pred ccccCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHh------cCCcEEEEECCCCCHHH
Confidence 44567999999999999999999999999999999998775 3456666666654 36789999999999999
Q ss_pred HHHHHHHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCC
Q psy13409 86 VRKCAQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGD 163 (330)
Q Consensus 86 i~~l~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~ 163 (330)
++++++++.+.++++|+||||||+.... .+.+.++|++.+++|+.+++++++.++|.|. +.|+||++||.++..+.
T Consensus 78 v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~--~~g~iv~isS~~~~~~~ 155 (262)
T 3ksu_A 78 VAKLFDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMN--PNGHIITIATSLLAAYT 155 (262)
T ss_dssp HHHHHHHHHHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEE--EEEEEEEECCCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhc--CCCEEEEEechhhccCC
Confidence 9999999999999999999999987543 5789999999999999999999999999983 35899999998877664
Q ss_pred CCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccc
Q psy13409 164 GSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHY 243 (330)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (330)
+....|++||+|+++|++++|.|++
T Consensus 156 --------------~~~~~Y~asKaa~~~l~~~la~e~~----------------------------------------- 180 (262)
T 3ksu_A 156 --------------GFYSTYAGNKAPVEHYTRAASKELM----------------------------------------- 180 (262)
T ss_dssp --------------CCCCC-----CHHHHHHHHHHHHTT-----------------------------------------
T ss_pred --------------CCCchhHHHHHHHHHHHHHHHHHHH-----------------------------------------
Confidence 5678899999999999999999998
Q ss_pred ccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCce
Q psy13409 244 CKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGL 321 (330)
Q Consensus 244 ~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~ 321 (330)
+ .||+||+|+||+|+|++......... .+... .+.++ +.+|+|+|++++||+++ ++++||+
T Consensus 181 ---------~---~gi~vn~v~PG~v~T~~~~~~~~~~~-~~~~~~~~~~~r--~~~pedvA~~v~~L~s~--~~~itG~ 243 (262)
T 3ksu_A 181 ---------K---QQISVNAIAPGPMDTSFFYGQETKES-TAFHKSQAMGNQ--LTKIEDIAPIIKFLTTD--GWWINGQ 243 (262)
T ss_dssp ---------T---TTCEEEEEEECCCCTHHHHTCC-------------CCCC--SCCGGGTHHHHHHHHTT--TTTCCSC
T ss_pred ---------H---cCcEEEEEeeCCCcCccccccCchHH-HHHHHhcCcccC--CCCHHHHHHHHHHHcCC--CCCccCC
Confidence 6 79999999999999998765432221 12222 23444 89999999999999966 6799999
Q ss_pred ecccCC
Q psy13409 322 YYAKAD 327 (330)
Q Consensus 322 ~~~~~~ 327 (330)
.|...+
T Consensus 244 ~i~vdG 249 (262)
T 3ksu_A 244 TIFANG 249 (262)
T ss_dssp EEEEST
T ss_pred EEEECC
Confidence 987654
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-40 Score=307.67 Aligned_cols=239 Identities=23% Similarity=0.232 Sum_probs=189.9
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
|.++++|++|||||++|||++++++|+++|++|++++|+.+++++..+++ +.++.++.+|++|++++++++
T Consensus 23 m~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~Dv~d~~~v~~~~ 93 (272)
T 4dyv_A 23 MSKTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEI---------GDDALCVPTDVTDPDSVRALF 93 (272)
T ss_dssp -----CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---------TSCCEEEECCTTSHHHHHHHH
T ss_pred hcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---------CCCeEEEEecCCCHHHHHHHH
Confidence 44689999999999999999999999999999999999998887776665 356889999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCC---CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC--CCeEEEEcCCCcccCCCC
Q psy13409 91 QEILDNESAIHLLINNAGVMMC---PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA--PARIINLSSLAHTWGDGS 165 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~---~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~--~g~IV~iSS~~~~~~~~~ 165 (330)
+++.+.++++|+||||||...+ ..+.+.++|++.+++|+.+++++++.++|.|.+++ .|+||++||..+..+.
T Consensus 94 ~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~-- 171 (272)
T 4dyv_A 94 TATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATSPR-- 171 (272)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTSCC--
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcCCC--
Confidence 9999999999999999998643 36789999999999999999999999999998875 6899999999988774
Q ss_pred CcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccc
Q psy13409 166 MHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCK 245 (330)
Q Consensus 166 ~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (330)
++...|++||+|+++|+++++.|++
T Consensus 172 ------------~~~~~Y~asKaa~~~l~~~la~e~~------------------------------------------- 196 (272)
T 4dyv_A 172 ------------PYSAPYTATKHAITGLTKSTSLDGR------------------------------------------- 196 (272)
T ss_dssp ------------TTCHHHHHHHHHHHHHHHHHHHHHG-------------------------------------------
T ss_pred ------------CCchHHHHHHHHHHHHHHHHHHHhC-------------------------------------------
Confidence 6788999999999999999999998
Q ss_pred ccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceeccc
Q psy13409 246 NVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAK 325 (330)
Q Consensus 246 ~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~ 325 (330)
. .||+||+|+||+|+|++.+........ .....+.++ +.+|+|+|++++||++.+....+++..+..
T Consensus 197 -------~---~gI~vn~v~PG~v~T~~~~~~~~~~~~-~~~~~~~~~--~~~pedvA~~v~fL~s~~~~~~~~~i~i~~ 263 (272)
T 4dyv_A 197 -------V---HDIACGQIDIGNADTPMAQKMKAGVPQ-ADLSIKVEP--VMDVAHVASAVVYMASLPLDANVQFMTIMA 263 (272)
T ss_dssp -------G---GTEEEEEEEEEECC---------------------------CHHHHHHHHHHHHHSCTTSCCCEEEEEE
T ss_pred -------c---cCEEEEEEEECcccChhhhhhcccchh-hhhcccccC--CCCHHHHHHHHHHHhCCCCcCccceEEEec
Confidence 5 799999999999999998765432211 111233444 789999999999999988777777777665
Q ss_pred CCC
Q psy13409 326 ADL 328 (330)
Q Consensus 326 ~~~ 328 (330)
...
T Consensus 264 ~~~ 266 (272)
T 4dyv_A 264 TKM 266 (272)
T ss_dssp C--
T ss_pred cCc
Confidence 443
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-40 Score=311.32 Aligned_cols=240 Identities=26% Similarity=0.278 Sum_probs=205.8
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCC---EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGA---RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRK 88 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~---~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~ 88 (330)
.+++||++|||||++|||++++++|+++|+ +|++++|+.+.++++.+++.... .+.++.++.||++|++++++
T Consensus 29 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~~Dv~d~~~v~~ 104 (287)
T 3rku_A 29 ERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEF----PNAKVHVAQLDITQAEKIKP 104 (287)
T ss_dssp HHHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHC----TTCEEEEEECCTTCGGGHHH
T ss_pred hhcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhC----CCCeEEEEECCCCCHHHHHH
Confidence 358999999999999999999999999998 99999999999999888887653 35789999999999999999
Q ss_pred HHHHHHhcCCCeeEEEEcCCCCC---CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCC
Q psy13409 89 CAQEILDNESAIHLLINNAGVMM---CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGS 165 (330)
Q Consensus 89 l~~~i~~~~g~iDvlInnAG~~~---~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~ 165 (330)
+++++.+.++++|+||||||... +..+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||.++..+.
T Consensus 105 ~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~-- 182 (287)
T 3rku_A 105 FIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGRDAY-- 182 (287)
T ss_dssp HHHTSCGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCC--
T ss_pred HHHHHHHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECChhhcCCC--
Confidence 99999999999999999999764 2367899999999999999999999999999998888999999999988774
Q ss_pred CcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccc
Q psy13409 166 MHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCK 245 (330)
Q Consensus 166 ~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (330)
+....|++||+|+++|+++++.|++
T Consensus 183 ------------~~~~~Y~asKaa~~~l~~~la~e~~------------------------------------------- 207 (287)
T 3rku_A 183 ------------PTGSIYCASKFAVGAFTDSLRKELI------------------------------------------- 207 (287)
T ss_dssp ------------TTCHHHHHHHHHHHHHHHHHHHHTT-------------------------------------------
T ss_pred ------------CCCchHHHHHHHHHHHHHHHHHHhh-------------------------------------------
Confidence 7788999999999999999999998
Q ss_pred ccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceeccc
Q psy13409 246 NVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAK 325 (330)
Q Consensus 246 ~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~ 325 (330)
+ .||+||+|+||+|+|++......... +............+|+|+|++++||+++ .+++++|+.+-.
T Consensus 208 -------~---~gIrvn~v~PG~v~T~~~~~~~~~~~--~~~~~~~~~~~p~~pedvA~~v~~l~s~-~~~~i~g~~i~v 274 (287)
T 3rku_A 208 -------N---TKIRVILIAPGLVETEFSLVRYRGNE--EQAKNVYKDTTPLMADDVADLIVYATSR-KQNTVIADTLIF 274 (287)
T ss_dssp -------T---SSCEEEEEEESCEESSHHHHHTTTCH--HHHHHHHTTSCCEEHHHHHHHHHHHHTS-CTTEEEEEEEEE
T ss_pred -------h---cCCEEEEEeCCcCcCccccccccCcH--HHHHHhhcccCCCCHHHHHHHHHHHhCC-CCCeEecceEEe
Confidence 6 89999999999999998643322211 1111222222245899999999999976 457999988754
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-40 Score=307.53 Aligned_cols=238 Identities=21% Similarity=0.238 Sum_probs=197.1
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
|+++||++|||||++|||++++++|+++|++|++++|+.+++++..+. .+.++.++.+|++++++++++++
T Consensus 1 M~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~---------~~~~~~~~~~Dv~~~~~v~~~~~ 71 (281)
T 3zv4_A 1 MKLTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVA---------HGGNAVGVVGDVRSLQDQKRAAE 71 (281)
T ss_dssp CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---------TBTTEEEEECCTTCHHHHHHHHH
T ss_pred CCcCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHH---------cCCcEEEEEcCCCCHHHHHHHHH
Confidence 358999999999999999999999999999999999998877665543 25678999999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCCC-------CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCC
Q psy13409 92 EILDNESAIHLLINNAGVMMCP-------RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDG 164 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~-------~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~ 164 (330)
++.+.++++|+||||||+.... .+.+.++|++.+++|+.++++++++++|.|.+++ |+||++||..+..+.
T Consensus 72 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~- 149 (281)
T 3zv4_A 72 RCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSR-GSVVFTISNAGFYPN- 149 (281)
T ss_dssp HHHHHHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGTSSS-
T ss_pred HHHHhcCCCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CeEEEEecchhccCC-
Confidence 9999999999999999986432 2344567999999999999999999999998764 999999999987774
Q ss_pred CCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccc
Q psy13409 165 SMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYC 244 (330)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
+....|++||+|+++|++++|.|++
T Consensus 150 -------------~~~~~Y~asKaa~~~l~~~la~e~~------------------------------------------ 174 (281)
T 3zv4_A 150 -------------GGGPLYTATKHAVVGLVRQMAFELA------------------------------------------ 174 (281)
T ss_dssp -------------SSCHHHHHHHHHHHHHHHHHHHHHT------------------------------------------
T ss_pred -------------CCCchhHHHHHHHHHHHHHHHHHhc------------------------------------------
Confidence 6788999999999999999999998
Q ss_pred cccccCCCCCCCCceeEEEeeCcccccCcccccCCC--------chhhHHHHHHhhhhhccChHHHHHHHHHhhcccccc
Q psy13409 245 KNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSI--------IPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCE 316 (330)
Q Consensus 245 ~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~ 316 (330)
+ . ||||+|+||+|+|++....... .+..+.........++.+|+|+|++++||++++.++
T Consensus 175 --------~---~-Irvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~fL~s~~~~~ 242 (281)
T 3zv4_A 175 --------P---H-VRVNGVAPGGMNTDLRGPSSLGLSEQSISSVPLADMLKSVLPIGRMPALEEYTGAYVFFATRGDSL 242 (281)
T ss_dssp --------T---T-SEEEEEEECSSCC--CCCTTCC--------CCHHHHHHHTCTTSSCCCGGGGSHHHHHHHSTTTST
T ss_pred --------C---C-CEEEEEECCcCcCCcccccccccccccccchhHHHHHHhcCCCCCCCCHHHHHHHHHHhhcccccc
Confidence 4 4 9999999999999987543211 112222222222333899999999999999856788
Q ss_pred ccCceecccCC
Q psy13409 317 RETGLYYAKAD 327 (330)
Q Consensus 317 ~~~G~~~~~~~ 327 (330)
++||+.|...+
T Consensus 243 ~itG~~i~vdG 253 (281)
T 3zv4_A 243 PATGALLNYDG 253 (281)
T ss_dssp TCSSCEEEESS
T ss_pred cccCcEEEECC
Confidence 99999987543
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-40 Score=302.33 Aligned_cols=240 Identities=22% Similarity=0.271 Sum_probs=192.5
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
++++++|++|||||++|||++++++|+++|++|++++|+.+++++..+++ +.++.++.+|+++++++++++
T Consensus 4 ~m~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~D~~~~~~~~~~~ 74 (261)
T 3n74_A 4 SMSLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI---------GDAALAVAADISKEADVDAAV 74 (261)
T ss_dssp -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---------CTTEEEEECCTTSHHHHHHHH
T ss_pred cccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh---------CCceEEEEecCCCHHHHHHHH
Confidence 35789999999999999999999999999999999999998888776654 457899999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCC---CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC----CCeEEEEcCCCcccCC
Q psy13409 91 QEILDNESAIHLLINNAGVMMC---PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA----PARIINLSSLAHTWGD 163 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~---~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~----~g~IV~iSS~~~~~~~ 163 (330)
+++.+.++++|++|||||.... ..+.+.++|++.+++|+.+++++++.++|.|.+++ .++||++||..+..+.
T Consensus 75 ~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~ 154 (261)
T 3n74_A 75 EAALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGRPR 154 (261)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTSCC
T ss_pred HHHHHhcCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcCCC
Confidence 9999999999999999998652 25678899999999999999999999999998764 5789999999887764
Q ss_pred CCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccc
Q psy13409 164 GSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHY 243 (330)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (330)
+....|++||+|+++|+++++.|++
T Consensus 155 --------------~~~~~Y~asKaa~~~~~~~la~e~~----------------------------------------- 179 (261)
T 3n74_A 155 --------------PNLAWYNATKGWVVSVTKALAIELA----------------------------------------- 179 (261)
T ss_dssp --------------TTCHHHHHHHHHHHHHHHHHHHHHG-----------------------------------------
T ss_pred --------------CCccHHHHHHHHHHHHHHHHHHHhh-----------------------------------------
Confidence 6788999999999999999999998
Q ss_pred ccccccCCCCCCCCceeEEEeeCcccccCcccccCCC--chhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCce
Q psy13409 244 CKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSI--IPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGL 321 (330)
Q Consensus 244 ~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~ 321 (330)
+ .||+||+|+||+|+|++....... ....+.........++.+|+|+|++++||+++ .++++||+
T Consensus 180 ---------~---~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~-~~~~itG~ 246 (261)
T 3n74_A 180 ---------P---AKIRVVALNPVAGETPLLTTFMGEDSEEIRKKFRDSIPMGRLLKPDDLAEAAAFLCSP-QASMITGV 246 (261)
T ss_dssp ---------G---GTEEEEEEEEC-------------------------CTTSSCCCHHHHHHHHHHHTSG-GGTTCCSC
T ss_pred ---------h---cCcEEEEEecCcccChhhhhhcccCcHHHHHHHhhcCCcCCCcCHHHHHHHHHHHcCC-cccCcCCc
Confidence 5 799999999999999998765321 11112222222223389999999999999965 56899999
Q ss_pred ecccCC
Q psy13409 322 YYAKAD 327 (330)
Q Consensus 322 ~~~~~~ 327 (330)
.|...+
T Consensus 247 ~i~vdg 252 (261)
T 3n74_A 247 ALDVDG 252 (261)
T ss_dssp EEEEST
T ss_pred EEEecC
Confidence 987654
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-40 Score=304.28 Aligned_cols=232 Identities=19% Similarity=0.248 Sum_probs=194.3
Q ss_pred cCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHH
Q psy13409 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRK 88 (330)
Q Consensus 9 ~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~ 88 (330)
.+..++++|++|||||++|||++++++|+++|++|++++|+.+++++. ...++.++.+|++|++++++
T Consensus 9 ~m~~~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~------------~~~~~~~~~~Dv~d~~~v~~ 76 (266)
T 3p19_A 9 QMGRGSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKAL------------NLPNTLCAQVDVTDKYTFDT 76 (266)
T ss_dssp ------CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHTT------------CCTTEEEEECCTTCHHHHHH
T ss_pred cCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHh------------hcCCceEEEecCCCHHHHHH
Confidence 344568999999999999999999999999999999999998765432 23478899999999999999
Q ss_pred HHHHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCC
Q psy13409 89 CAQEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSM 166 (330)
Q Consensus 89 l~~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~ 166 (330)
+++++.+.++++|+||||||.... ..+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||.++..+.
T Consensus 77 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~--- 153 (266)
T 3p19_A 77 AITRAEKIYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGKKTF--- 153 (266)
T ss_dssp HHHHHHHHHCSEEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCC---
T ss_pred HHHHHHHHCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhCCCC---
Confidence 999999999999999999998753 367889999999999999999999999999999888999999999987774
Q ss_pred cccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccc
Q psy13409 167 HFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKN 246 (330)
Q Consensus 167 ~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (330)
++...|++||+|+++|+++++.|++
T Consensus 154 -----------~~~~~Y~asK~a~~~~~~~la~e~~-------------------------------------------- 178 (266)
T 3p19_A 154 -----------PDHAAYCGTKFAVHAISENVREEVA-------------------------------------------- 178 (266)
T ss_dssp -----------TTCHHHHHHHHHHHHHHHHHHHHHG--------------------------------------------
T ss_pred -----------CCCchHHHHHHHHHHHHHHHHHHhc--------------------------------------------
Confidence 6788999999999999999999998
Q ss_pred cccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHH--HHHhhhhhccChHHHHHHHHHhhccccccccCcee
Q psy13409 247 VLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWL--YQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLY 322 (330)
Q Consensus 247 ~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~ 322 (330)
+ .||+||+|+||+|+|++.............. ..++++ +.+|+|+|++++||++.+.. .++++.
T Consensus 179 ------~---~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~r--~~~pedvA~av~~l~~~~~~-~~~~~i 244 (266)
T 3p19_A 179 ------A---SNVRVMTIAPSAVKTELLSHTTSQQIKDGYDAWRVDMGG--VLAADDVARAVLFAYQQPQN-VCIREI 244 (266)
T ss_dssp ------G---GTCEEEEEEECSBSSSGGGGCSCHHHHHHHHHHHHHTTC--CBCHHHHHHHHHHHHHSCTT-EEEEEE
T ss_pred ------c---cCcEEEEEeeCccccchhhcccchhhhHHHHhhcccccC--CCCHHHHHHHHHHHHcCCCC-ccceee
Confidence 5 7999999999999999987665322111111 124555 89999999999999988654 444443
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-40 Score=304.63 Aligned_cols=242 Identities=18% Similarity=0.189 Sum_probs=205.0
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
.+++||++|||||++|||++++++|+++|++|++++|+.+++++..+++.+.. .+.++.++.+|++++++++++++
T Consensus 9 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~v~~~~~ 84 (267)
T 1iy8_A 9 TRFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETA----PDAEVLTTVADVSDEAQVEAYVT 84 (267)
T ss_dssp -CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHC----TTCCEEEEECCTTSHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc----CCceEEEEEccCCCHHHHHHHHH
Confidence 45899999999999999999999999999999999999988888877776532 25678999999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCC---CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 92 EILDNESAIHLLINNAGVMMC---PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~---~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
++.+.++++|+||||||.... ..+.+.++|++.+++|+.+++.+++.++|.|.+++.|+||++||..+..+.
T Consensus 85 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----- 159 (267)
T 1iy8_A 85 ATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGI----- 159 (267)
T ss_dssp HHHHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSBC-----
T ss_pred HHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhccCC-----
Confidence 999999999999999998643 357788999999999999999999999999998888999999999887664
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
++...|++||+++++|+++++.|++
T Consensus 160 ---------~~~~~Y~asK~a~~~~~~~la~e~~---------------------------------------------- 184 (267)
T 1iy8_A 160 ---------GNQSGYAAAKHGVVGLTRNSAVEYG---------------------------------------------- 184 (267)
T ss_dssp ---------SSBHHHHHHHHHHHHHHHHHHHHHG----------------------------------------------
T ss_pred ---------CCCccHHHHHHHHHHHHHHHHHHHH----------------------------------------------
Confidence 6788999999999999999999998
Q ss_pred cCCCCCCCCceeEEEeeCcccccCccccc--CCCchhhH----HHH--HHhhhhhccChHHHHHHHHHhhccccccccCc
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHF--DSIIPGTA----WLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETG 320 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~--~~~~~~~~----~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G 320 (330)
+ .||+||+|+||+|+|++.... .......+ ... .++++ +.+|+|+|++++||+++ .++++||
T Consensus 185 ----~---~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r--~~~~~dvA~~v~~l~s~-~~~~~tG 254 (267)
T 1iy8_A 185 ----R---YGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVNPSKR--YGEAPEIAAVVAFLLSD-DASYVNA 254 (267)
T ss_dssp ----G---GTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTTCTTCS--CBCHHHHHHHHHHHTSG-GGTTCCS
T ss_pred ----h---cCeEEEEEEeCCCcCcchhccccccChhhhhhHHHHHhccCCCCC--CcCHHHHHHHHHHHcCc-cccCCCC
Confidence 5 799999999999999986542 10011111 121 13344 88999999999999865 5679999
Q ss_pred eecccCC
Q psy13409 321 LYYAKAD 327 (330)
Q Consensus 321 ~~~~~~~ 327 (330)
+.|...+
T Consensus 255 ~~i~vdG 261 (267)
T 1iy8_A 255 TVVPIDG 261 (267)
T ss_dssp CEEEEST
T ss_pred CEEEECC
Confidence 9987544
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-40 Score=308.11 Aligned_cols=239 Identities=14% Similarity=0.083 Sum_probs=196.4
Q ss_pred CCCCCCEEEEEcCC--CchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSN--TGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 12 ~~~~gk~aLITGas--~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
.+++||++|||||+ +|||+++++.|+++|++|++++|+....+. .+++.+. ..++.++.||++|+++++++
T Consensus 27 ~~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~-~~~~~~~------~~~~~~~~~Dv~d~~~v~~~ 99 (293)
T 3grk_A 27 GLLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKR-VEPLAEE------LGAFVAGHCDVADAASIDAV 99 (293)
T ss_dssp CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHH-HHHHHHH------HTCEEEEECCTTCHHHHHHH
T ss_pred ccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHH-HHHHHHh------cCCceEEECCCCCHHHHHHH
Confidence 46899999999999 559999999999999999999999654333 3333332 23688999999999999999
Q ss_pred HHHHHhcCCCeeEEEEcCCCCC------CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCC
Q psy13409 90 AQEILDNESAIHLLINNAGVMM------CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGD 163 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~------~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~ 163 (330)
++++.+.++++|+||||||+.. +..+.+.++|+..+++|+.+++++++.++|.|.+ .|+||++||..+..+.
T Consensus 100 ~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~--~g~Iv~isS~~~~~~~ 177 (293)
T 3grk_A 100 FETLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMAD--GGSILTLTYYGAEKVM 177 (293)
T ss_dssp HHHHHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTT--CEEEEEEECGGGTSBC
T ss_pred HHHHHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccC--CCEEEEEeehhhccCC
Confidence 9999999999999999999874 3367889999999999999999999999999975 6899999999887764
Q ss_pred CCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccc
Q psy13409 164 GSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHY 243 (330)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (330)
+....|++||+|+++|++++|.|++
T Consensus 178 --------------~~~~~Y~asKaa~~~l~~~la~e~~----------------------------------------- 202 (293)
T 3grk_A 178 --------------PNYNVMGVAKAALEASVKYLAVDLG----------------------------------------- 202 (293)
T ss_dssp --------------TTTTHHHHHHHHHHHHHHHHHHHHG-----------------------------------------
T ss_pred --------------CchHHHHHHHHHHHHHHHHHHHHHh-----------------------------------------
Confidence 6788999999999999999999999
Q ss_pred ccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceec
Q psy13409 244 CKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYY 323 (330)
Q Consensus 244 ~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~ 323 (330)
+ .||+||+|+||+|+|++...........++........++.+|+|+|++++||+++ .++++||++|
T Consensus 203 ---------~---~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~-~~~~itG~~i 269 (293)
T 3grk_A 203 ---------P---QNIRVNAISAGPIKTLAASGIGDFRYILKWNEYNAPLRRTVTIDEVGDVGLYFLSD-LSRSVTGEVH 269 (293)
T ss_dssp ---------G---GTEEEEEEEECCCCC------CCHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSG-GGTTCCSCEE
T ss_pred ---------H---hCCEEEEEecCCCcchhhhcccchHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCc-cccCCcceEE
Confidence 5 79999999999999998876554333333333333333389999999999999966 5689999998
Q ss_pred ccCC
Q psy13409 324 AKAD 327 (330)
Q Consensus 324 ~~~~ 327 (330)
...+
T Consensus 270 ~vdG 273 (293)
T 3grk_A 270 HADS 273 (293)
T ss_dssp EEST
T ss_pred EECC
Confidence 7643
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-40 Score=305.74 Aligned_cols=245 Identities=22% Similarity=0.263 Sum_probs=201.1
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecC------------hhHHHHHHHHHHHhhcccCCCCeEEEEE
Q psy13409 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRS------------LEKAETAADDIRTSLKDVKDAGEVVIRQ 77 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~------------~~~l~~~~~~l~~~~~~~~~~~~v~~i~ 77 (330)
.+.+++||++|||||++|||++++++|+++|++|++++|+ .+.+++..+.+... +.++.++.
T Consensus 7 ~~~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 80 (278)
T 3sx2_A 7 SEGPLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDI------GSRIVARQ 80 (278)
T ss_dssp --CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHH------TCCEEEEE
T ss_pred CCCCCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhc------CCeEEEEe
Confidence 3457899999999999999999999999999999999987 66777777666553 57899999
Q ss_pred ccCCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcC
Q psy13409 78 LDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSS 156 (330)
Q Consensus 78 ~Dls~~~si~~l~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS 156 (330)
+|++|+++++++++++.+.++++|+||||||+..... +.++|++.+++|+.+++++++.++|.|.+++ .|+||++||
T Consensus 81 ~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~--~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS 158 (278)
T 3sx2_A 81 ADVRDRESLSAALQAGLDELGRLDIVVANAGIAPMSA--GDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISS 158 (278)
T ss_dssp CCTTCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCSS--THHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECC
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCC--CHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEcc
Confidence 9999999999999999999999999999999875433 5789999999999999999999999998875 689999999
Q ss_pred CCcccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccC
Q psy13409 157 LAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANL 236 (330)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (330)
.++..+.. .+.++...|++||+|+++|+++++.|++
T Consensus 159 ~~~~~~~~----------~~~~~~~~Y~asKaa~~~~~~~la~e~~---------------------------------- 194 (278)
T 3sx2_A 159 SAGLAGVG----------SADPGSVGYVAAKHGVVGLMRVYANLLA---------------------------------- 194 (278)
T ss_dssp GGGTSCCC----------CSSHHHHHHHHHHHHHHHHHHHHHHHHG----------------------------------
T ss_pred HHhcCCCc----------cCCCCchHhHHHHHHHHHHHHHHHHHHh----------------------------------
Confidence 98876631 1125677899999999999999999998
Q ss_pred CCCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH---------HHhhhhhccChHHHHHHHH
Q psy13409 237 QTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY---------QRVGGLFIKSPLQGAQTTL 307 (330)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~e~a~~~~ 307 (330)
+ .||+||+|+||+|+|++............... .... .++.+|+|+|++++
T Consensus 195 ----------------~---~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~p~dvA~~v~ 254 (278)
T 3sx2_A 195 ----------------G---QMIRVNSIHPSGVETPMINNEFTREWLAKMAAATDTPGAMGNAMP-VEVLAPEDVANAVA 254 (278)
T ss_dssp ----------------G---GTEEEEEEEESCBSSTTTSSHHHHHHHHHHHHHCC--CTTSCSSS-CSSBCHHHHHHHHH
T ss_pred ----------------c---cCcEEEEEecCCccCccchhhhHHHHHhhccchhhhhhhhhhhcC-cCcCCHHHHHHHHH
Confidence 5 79999999999999998764221110000000 0011 23779999999999
Q ss_pred HhhccccccccCceecccCC
Q psy13409 308 YCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 308 ~l~~~~~~~~~~G~~~~~~~ 327 (330)
||+++ .++++||+.|...+
T Consensus 255 ~l~s~-~~~~itG~~i~vdG 273 (278)
T 3sx2_A 255 WLVSD-QARYITGVTLPVDA 273 (278)
T ss_dssp HHTSG-GGTTCCSCEEEEST
T ss_pred HHhCc-ccccccCCEEeECC
Confidence 99966 56899999987543
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-40 Score=300.84 Aligned_cols=246 Identities=20% Similarity=0.235 Sum_probs=205.0
Q ss_pred ccCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHH
Q psy13409 8 CTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVR 87 (330)
Q Consensus 8 ~~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~ 87 (330)
+....+++||++|||||++|||++++++|+++|++|++++|+.+++++..+++... +.++.++.+|++++++++
T Consensus 6 ~~~~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~~~~~ 79 (260)
T 2zat_A 6 VERRKPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGE------GLSVTGTVCHVGKAEDRE 79 (260)
T ss_dssp ----CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHH
T ss_pred cccccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCceEEEEccCCCHHHHH
Confidence 34445689999999999999999999999999999999999998888877777652 567889999999999999
Q ss_pred HHHHHHHhcCCCeeEEEEcCCCCC---CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCC
Q psy13409 88 KCAQEILDNESAIHLLINNAGVMM---CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDG 164 (330)
Q Consensus 88 ~l~~~i~~~~g~iDvlInnAG~~~---~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~ 164 (330)
++++++.+.++++|+||||||... +..+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||..+..+.
T Consensus 80 ~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~- 158 (260)
T 2zat_A 80 RLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPF- 158 (260)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCC-
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEechhhcCCC-
Confidence 999999999999999999999753 2357788999999999999999999999999988878999999998877664
Q ss_pred CCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccc
Q psy13409 165 SMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYC 244 (330)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
++...|++||++++.|+++++.|++
T Consensus 159 -------------~~~~~Y~~sK~a~~~~~~~la~e~~------------------------------------------ 183 (260)
T 2zat_A 159 -------------PNLGPYNVSKTALLGLTKNLAVELA------------------------------------------ 183 (260)
T ss_dssp -------------TTBHHHHHHHHHHHHHHHHHHHHHG------------------------------------------
T ss_pred -------------CCchhHHHHHHHHHHHHHHHHHHhc------------------------------------------
Confidence 6788999999999999999999998
Q ss_pred cccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecc
Q psy13409 245 KNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYA 324 (330)
Q Consensus 245 ~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~ 324 (330)
+ .||+||+|+||+|+|++.....................++.+|+|+|++++||+++ .++++||+.|.
T Consensus 184 --------~---~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~v~~l~s~-~~~~~tG~~~~ 251 (260)
T 2zat_A 184 --------P---RNIRVNCLAPGLIKTNFSQVLWMDKARKEYMKESLRIRRLGNPEDCAGIVSFLCSE-DASYITGETVV 251 (260)
T ss_dssp --------G---GTEEEEEEEECSBCSSTTHHHHSSHHHHHHHHHHHTCSSCBCGGGGHHHHHHHTSG-GGTTCCSCEEE
T ss_pred --------c---cCeEEEEEEECcccCccchhcccChHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCc-ccCCccCCEEE
Confidence 5 79999999999999998654221111112222222223389999999999999865 56799999887
Q ss_pred cCC
Q psy13409 325 KAD 327 (330)
Q Consensus 325 ~~~ 327 (330)
-..
T Consensus 252 vdg 254 (260)
T 2zat_A 252 VGG 254 (260)
T ss_dssp EST
T ss_pred ECC
Confidence 543
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-40 Score=301.96 Aligned_cols=242 Identities=20% Similarity=0.273 Sum_probs=204.6
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEe-cChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHH
Q psy13409 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMAC-RSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRK 88 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~-R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~ 88 (330)
....+++|++|||||++|||++++++|+++|++|++++ |+.+..++..+.+.. .+.++.++.+|+++++++++
T Consensus 7 ~~~~~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Dv~~~~~v~~ 80 (256)
T 3ezl_A 7 HHMVMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKA------LGFDFYASEGNVGDWDSTKQ 80 (256)
T ss_dssp ------CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHH------TTCCCEEEECCTTCHHHHHH
T ss_pred CCCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh------cCCeeEEEecCCCCHHHHHH
Confidence 34468999999999999999999999999999999988 667777777777665 35688999999999999999
Q ss_pred HHHHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCC
Q psy13409 89 CAQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSM 166 (330)
Q Consensus 89 l~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~ 166 (330)
+++++.+.++++|+||||||..... .+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||..+..+.
T Consensus 81 ~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~--- 157 (256)
T 3ezl_A 81 AFDKVKAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQKGQ--- 157 (256)
T ss_dssp HHHHHHHHTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCGGGSC---
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhccCC---
Confidence 9999999999999999999987543 67889999999999999999999999999999888999999999988775
Q ss_pred cccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccc
Q psy13409 167 HFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKN 246 (330)
Q Consensus 167 ~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (330)
++...|++||+|+++|+++++.|++
T Consensus 158 -----------~~~~~Y~asK~a~~~~~~~la~e~~-------------------------------------------- 182 (256)
T 3ezl_A 158 -----------FGQTNYSTAKAGIHGFTMSLAQEVA-------------------------------------------- 182 (256)
T ss_dssp -----------SCCHHHHHHHHHHHHHHHHHHHHHG--------------------------------------------
T ss_pred -----------CCCcccHHHHHHHHHHHHHHHHHHH--------------------------------------------
Confidence 7788999999999999999999998
Q ss_pred cccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 247 VLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 247 ~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
. .||+||+|+||+|+|++.+.... ...+.........++.+|+|+|++++||+++ .++++||+.|...
T Consensus 183 ------~---~gi~v~~v~PG~v~t~~~~~~~~--~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~-~~~~~tG~~i~vd 250 (256)
T 3ezl_A 183 ------T---KGVTVNTVSPGYIGTDMVKAIRP--DVLEKIVATIPVRRLGSPDEIGSIVAWLASE-ESGFSTGADFSLN 250 (256)
T ss_dssp ------G---GTEEEEEEEECSBCCHHHHTSCH--HHHHHHHHHSTTSSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEES
T ss_pred ------H---hCCEEEEEEECcccCccccccCH--HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCC-cccCCcCcEEEEC
Confidence 5 79999999999999999876532 2223333333333488999999999999965 5679999998764
Q ss_pred C
Q psy13409 327 D 327 (330)
Q Consensus 327 ~ 327 (330)
+
T Consensus 251 g 251 (256)
T 3ezl_A 251 G 251 (256)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-40 Score=297.71 Aligned_cols=233 Identities=24% Similarity=0.289 Sum_probs=201.8
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccC--CCHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDL--SSLKSVRK 88 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dl--s~~~si~~ 88 (330)
+.+++||++|||||++|||++++++|+++|++|++++|+.+++++..+++... ...++.++.+|+ ++.+++++
T Consensus 9 ~~~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~d~d~~~~~~~~~ 83 (247)
T 3i1j_A 9 PELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSA-----GQPQPLIIALNLENATAQQYRE 83 (247)
T ss_dssp TTTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-----TSCCCEEEECCTTTCCHHHHHH
T ss_pred CccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhc-----CCCCceEEEeccccCCHHHHHH
Confidence 34689999999999999999999999999999999999999999988888764 234566666766 99999999
Q ss_pred HHHHHHhcCCCeeEEEEcCCCCCC---CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCC
Q psy13409 89 CAQEILDNESAIHLLINNAGVMMC---PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGS 165 (330)
Q Consensus 89 l~~~i~~~~g~iDvlInnAG~~~~---~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~ 165 (330)
+++++.+.++++|+||||||...+ ..+.+.++|++.+++|+.+++.+++.++|.|.+++.++||++||..+..+.
T Consensus 84 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~-- 161 (247)
T 3i1j_A 84 LAARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGRKGR-- 161 (247)
T ss_dssp HHHHHHHHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECCGGGTSCC--
T ss_pred HHHHHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcchhhcCCC--
Confidence 999999999999999999998533 367899999999999999999999999999988888999999999887774
Q ss_pred CcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccc
Q psy13409 166 MHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCK 245 (330)
Q Consensus 166 ~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (330)
++...|++||+|+++|+++++.|++.
T Consensus 162 ------------~~~~~Y~~sK~a~~~~~~~la~e~~~------------------------------------------ 187 (247)
T 3i1j_A 162 ------------ANWGAYGVSKFATEGLMQTLADELEG------------------------------------------ 187 (247)
T ss_dssp ------------TTCHHHHHHHHHHHHHHHHHHHHHTT------------------------------------------
T ss_pred ------------CCcchhHHHHHHHHHHHHHHHHHhcC------------------------------------------
Confidence 67889999999999999999999962
Q ss_pred ccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceeccc
Q psy13409 246 NVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAK 325 (330)
Q Consensus 246 ~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~ 325 (330)
. ++|+||+|+||+|+|++......... ..+..+|+|+|+.++||+++ .++++||+.|..
T Consensus 188 -------~---~~i~v~~v~PG~v~t~~~~~~~~~~~----------~~~~~~p~dva~~~~~l~s~-~~~~itG~~i~~ 246 (247)
T 3i1j_A 188 -------V---TAVRANSINPGATRTGMRAQAYPDEN----------PLNNPAPEDIMPVYLYLMGP-DSTGINGQALNA 246 (247)
T ss_dssp -------T---SSEEEEEEECCCCSSHHHHHHSTTSC----------GGGSCCGGGGTHHHHHHHSG-GGTTCCSCEEEC
T ss_pred -------C---CCeEEEEEecCcccCccchhcccccC----------ccCCCCHHHHHHHHHHHhCc-hhccccCeeecC
Confidence 2 58999999999999998765433221 11267899999999999965 678999999864
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-40 Score=305.38 Aligned_cols=241 Identities=20% Similarity=0.277 Sum_probs=200.3
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecC-hhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRS-LEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~-~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
.++++||++|||||++|||++++++|+++|++|++++|+ .+..+.+.+.+++ .+.++.++.+|++++++++++
T Consensus 24 ~m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~~D~~~~~~v~~~ 97 (271)
T 4iin_A 24 AMQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEE------KGYKAAVIKFDAASESDFIEA 97 (271)
T ss_dssp CCCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH------TTCCEEEEECCTTCHHHHHHH
T ss_pred hcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh------cCCceEEEECCCCCHHHHHHH
Confidence 357899999999999999999999999999999999994 5555556566654 367899999999999999999
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCc
Q psy13409 90 AQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~ 167 (330)
++++.+.++++|++|||||..... .+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||..+..+.
T Consensus 98 ~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~---- 173 (271)
T 4iin_A 98 IQTIVQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRFGSVVNVASIIGERGN---- 173 (271)
T ss_dssp HHHHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC----
T ss_pred HHHHHHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEechhhcCCC----
Confidence 999999999999999999987643 57788999999999999999999999999999888999999999887774
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
++...|++||+|+++|+++++.|++
T Consensus 174 ----------~~~~~Y~asK~a~~~~~~~la~e~~--------------------------------------------- 198 (271)
T 4iin_A 174 ----------MGQTNYSASKGGMIAMSKSFAYEGA--------------------------------------------- 198 (271)
T ss_dssp ----------TTCHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------
T ss_pred ----------CCchHhHHHHHHHHHHHHHHHHHHH---------------------------------------------
Confidence 7788999999999999999999998
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
. +||+||+|+||+|+|++.+...... ...........++.+|+|+|++++||+++ .++++||+.|...+
T Consensus 199 -----~---~gi~v~~v~PG~v~T~~~~~~~~~~--~~~~~~~~~~~~~~~p~dvA~~i~~l~s~-~~~~itG~~i~vdG 267 (271)
T 4iin_A 199 -----L---RNIRFNSVTPGFIETDMNANLKDEL--KADYVKNIPLNRLGSAKEVAEAVAFLLSD-HSSYITGETLKVNG 267 (271)
T ss_dssp -----T---TTEEEEEEEECSBCCC--------------CGGGCTTCSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEEST
T ss_pred -----H---hCcEEEEEEeCcccCCchhhhcHHH--HHHHHhcCCcCCCcCHHHHHHHHHHHhCC-CcCCCcCCEEEeCC
Confidence 6 7999999999999999987654321 11111222223388999999999999966 56799999987644
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-40 Score=306.11 Aligned_cols=239 Identities=18% Similarity=0.123 Sum_probs=200.0
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEe-cChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHH-----
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMAC-RSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLK----- 84 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~-R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~----- 84 (330)
|.++++|++|||||++|||+++++.|+++|++|++++ |+.+.++++.+++... .+.++.++.+|+++++
T Consensus 4 m~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~~Dl~~~~~~~~~ 78 (291)
T 1e7w_A 4 MTAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNAR-----RPNSAITVQADLSNVATAPVS 78 (291)
T ss_dssp ----CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH-----STTCEEEEECCCSSSCBCCCC
T ss_pred ccCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhh-----cCCeeEEEEeecCCccccccc
Confidence 3468999999999999999999999999999999999 9998888888877632 2568999999999999
Q ss_pred ------------HHHHHHHHHHhcCCCeeEEEEcCCCCCC--CCCCC--------------hhhHHHhHHHHHHHHHHHH
Q psy13409 85 ------------SVRKCAQEILDNESAIHLLINNAGVMMC--PRQLT--------------EDGYELQFATNHLGHYLFT 136 (330)
Q Consensus 85 ------------si~~l~~~i~~~~g~iDvlInnAG~~~~--~~~~~--------------~~~~~~~l~vN~~g~~~l~ 136 (330)
+++++++++.+.++++|+||||||+... ..+.+ .++|+.++++|+.++++++
T Consensus 79 ~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~ 158 (291)
T 1e7w_A 79 GADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLI 158 (291)
T ss_dssp ----CCCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHH
Confidence 9999999999999999999999998643 24566 8899999999999999999
Q ss_pred HHHHHHHhhhC------CCeEEEEcCCCcccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhccccccccc
Q psy13409 137 LLLLPRIIKSA------PARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYS 210 (330)
Q Consensus 137 ~~~l~~l~~~~------~g~IV~iSS~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~ 210 (330)
+.++|.|.+++ .|+||++||..+..+. ++...|++||+|+++|+++++.|++
T Consensus 159 ~~~~~~m~~~~~~~~~~~g~Iv~isS~~~~~~~--------------~~~~~Y~asKaa~~~l~~~la~e~~-------- 216 (291)
T 1e7w_A 159 KAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPL--------------LGYTIYTMAKGALEGLTRSAALELA-------- 216 (291)
T ss_dssp HHHHHHHHTSCGGGSCSCEEEEEECCTTTTSCC--------------TTCHHHHHHHHHHHHHHHHHHHHHG--------
T ss_pred HHHHHHHHhcCCCCCCCCcEEEEEechhhcCCC--------------CCCchhHHHHHHHHHHHHHHHHHHH--------
Confidence 99999998876 6999999999887764 6788999999999999999999998
Q ss_pred ccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHH-
Q psy13409 211 CRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQ- 289 (330)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~- 289 (330)
+ .||+||+|+||+|+|++ + .. ....+....
T Consensus 217 ------------------------------------------~---~gI~vn~v~PG~v~T~~-~-~~--~~~~~~~~~~ 247 (291)
T 1e7w_A 217 ------------------------------------------P---LQIRVNGVGPGLSVLVD-D-MP--PAVWEGHRSK 247 (291)
T ss_dssp ------------------------------------------G---GTEEEEEEEESSBCCGG-G-SC--HHHHHHHHTT
T ss_pred ------------------------------------------h---cCeEEEEEeeCCccCCc-c-CC--HHHHHHHHhh
Confidence 5 79999999999999999 4 21 111122222
Q ss_pred -HhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 290 -RVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 290 -~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
+++ .++.+|+|+|++++||+++ .++++||++|...+
T Consensus 248 ~p~~-~r~~~pedvA~~v~~l~s~-~~~~itG~~i~vdG 284 (291)
T 1e7w_A 248 VPLY-QRDSSAAEVSDVVIFLCSS-KAKYITGTCVKVDG 284 (291)
T ss_dssp CTTT-TSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEEST
T ss_pred CCCC-CCCCCHHHHHHHHHHHhCC-cccCccCcEEEECC
Confidence 333 0388999999999999965 56799999986543
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-40 Score=301.18 Aligned_cols=244 Identities=19% Similarity=0.250 Sum_probs=204.6
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
+++++||++|||||++|||++++++|+++|++|++++|+.++++++.+++.... +.++.++.+|+++++++++++
T Consensus 2 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~D~~~~~~~~~~~ 76 (263)
T 3ai3_A 2 DMGISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKF-----GVRVLEVAVDVATPEGVDAVV 76 (263)
T ss_dssp CCCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-----CCCEEEEECCTTSHHHHHHHH
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhc-----CCceEEEEcCCCCHHHHHHHH
Confidence 356899999999999999999999999999999999999988888777775531 457889999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 91 QEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
+++.+.++++|+||||||.... ..+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||..+..+.
T Consensus 77 ~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----- 151 (263)
T 3ai3_A 77 ESVRSSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGGGAIIHNASICAVQPL----- 151 (263)
T ss_dssp HHHHHHHSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC-----
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCCC-----
Confidence 9999999999999999998643 357789999999999999999999999999988878999999999887664
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
+....|++||++++.|+++++.|++
T Consensus 152 ---------~~~~~Y~~sK~a~~~~~~~la~e~~---------------------------------------------- 176 (263)
T 3ai3_A 152 ---------WYEPIYNVTKAALMMFSKTLATEVI---------------------------------------------- 176 (263)
T ss_dssp ---------TTCHHHHHHHHHHHHHHHHHHHHHG----------------------------------------------
T ss_pred ---------CCcchHHHHHHHHHHHHHHHHHHhh----------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCC---------CchhhHHHHHH-hhhhhccChHHHHHHHHHhhcccccccc
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDS---------IIPGTAWLYQR-VGGLFIKSPLQGAQTTLYCALDKKCERE 318 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~---------~~~~~~~~~~~-~~~~~~~~~~e~a~~~~~l~~~~~~~~~ 318 (330)
+ .||+||+|+||+|+|++...... .....+..... ....++.+|+|+|++++||+++ .++++
T Consensus 177 ----~---~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~~~~l~s~-~~~~~ 248 (263)
T 3ai3_A 177 ----K---DNIRVNCINPGLILTPDWIKTAKELTKDNGGDWKGYLQSVADEHAPIKRFASPEELANFFVFLCSE-RATYS 248 (263)
T ss_dssp ----G---GTEEEEEEEECCBCCHHHHHHHHHHTTTTTCCHHHHHHHHHHHHCTTCSCBCHHHHHHHHHHHTST-TCTTC
T ss_pred ----h---cCcEEEEEecCcccCcchhhhhHhhhcccCCcHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHcCc-cccCC
Confidence 5 79999999999999998654211 01111111111 2222388999999999999965 46799
Q ss_pred CceecccCC
Q psy13409 319 TGLYYAKAD 327 (330)
Q Consensus 319 ~G~~~~~~~ 327 (330)
||+.|...+
T Consensus 249 ~G~~~~vdg 257 (263)
T 3ai3_A 249 VGSAYFVDG 257 (263)
T ss_dssp CSCEEEEST
T ss_pred CCcEEEECC
Confidence 999887544
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=296.67 Aligned_cols=234 Identities=25% Similarity=0.394 Sum_probs=198.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
+++||++|||||++|||++++++|+++|++|++++|+.++++++.+++... +.++.++.+|+++++++++++++
T Consensus 4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dv~~~~~~~~~~~~ 77 (247)
T 2jah_A 4 ALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAA------GAKVHVLELDVADRQGVDAAVAS 77 (247)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEECCCCCHHHHHHHHHH
Confidence 578999999999999999999999999999999999999888888777652 56789999999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 93 ILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
+.+.++++|+||||||.... ..+.+.++|++.+++|+.+++++++.++|.|.+++ |+||++||..+..+.
T Consensus 78 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~------- 149 (247)
T 2jah_A 78 TVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK-GTVVQMSSIAGRVNV------- 149 (247)
T ss_dssp HHHHHSCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGTCCC-------
T ss_pred HHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC-CEEEEEccHHhcCCC-------
Confidence 99999999999999998643 35788999999999999999999999999998877 999999999887764
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
+....|++||+|+++|+++++.|++
T Consensus 150 -------~~~~~Y~asK~a~~~~~~~la~e~~------------------------------------------------ 174 (247)
T 2jah_A 150 -------RNAAVYQATKFGVNAFSETLRQEVT------------------------------------------------ 174 (247)
T ss_dssp -------TTCHHHHHHHHHHHHHHHHHHHHHG------------------------------------------------
T ss_pred -------CCCcHHHHHHHHHHHHHHHHHHHhc------------------------------------------------
Confidence 6788999999999999999999998
Q ss_pred CCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCcee
Q psy13409 251 PPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLY 322 (330)
Q Consensus 251 ~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~ 322 (330)
+ .||+||+|+||+|+|++....... ..........++....+|+|+|+.++||++++ ++++++..
T Consensus 175 --~---~gi~v~~v~PG~v~T~~~~~~~~~-~~~~~~~~~~~~~~~~~pedvA~~v~~l~s~~-~~~~~~~i 239 (247)
T 2jah_A 175 --E---RGVRVVVIEPGTTDTELRGHITHT-ATKEMYEQRISQIRKLQAQDIAEAVRYAVTAP-HHATVHEI 239 (247)
T ss_dssp --G---GTCEEEEEEECSBSSSGGGGCCCH-HHHHHHHHHTTTSCCBCHHHHHHHHHHHHHSC-TTEEEEEE
T ss_pred --c---cCcEEEEEECCCCCCcchhcccch-hhHHHHHhcccccCCCCHHHHHHHHHHHhCCC-ccCccceE
Confidence 5 799999999999999987654321 11111111113311289999999999999764 45776654
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-40 Score=309.81 Aligned_cols=243 Identities=23% Similarity=0.299 Sum_probs=202.7
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecC------------hhHHHHHHHHHHHhhcccCCCCeEEEEE
Q psy13409 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRS------------LEKAETAADDIRTSLKDVKDAGEVVIRQ 77 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~------------~~~l~~~~~~l~~~~~~~~~~~~v~~i~ 77 (330)
.+.+++||++|||||++|||+++++.|+++|++|++++|+ .+.+++..+.+.. .+.++.++.
T Consensus 40 ~m~~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 113 (317)
T 3oec_A 40 RMNRLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEE------QGRRIIARQ 113 (317)
T ss_dssp --CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHH------TTCCEEEEE
T ss_pred hhhccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHh------cCCeEEEEE
Confidence 3456899999999999999999999999999999999886 6667776666655 367899999
Q ss_pred ccCCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEE
Q psy13409 78 LDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINL 154 (330)
Q Consensus 78 ~Dls~~~si~~l~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~i 154 (330)
+|++|+++++++++++.+.++++|+||||||+.... .+.+.++|++.+++|+.+++++++.++|.|.+++ +|+||++
T Consensus 114 ~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~i 193 (317)
T 3oec_A 114 ADVRDLASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFV 193 (317)
T ss_dssp CCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 999999999999999999999999999999987543 6789999999999999999999999999998875 6899999
Q ss_pred cCCCcccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcc
Q psy13409 155 SSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDA 234 (330)
Q Consensus 155 SS~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (330)
||..+..+. ++...|++||+|+++|+++||.|++
T Consensus 194 sS~~~~~~~--------------~~~~~Y~asKaa~~~l~~~la~e~~-------------------------------- 227 (317)
T 3oec_A 194 SSTVGLRGA--------------PGQSHYAASKHGVQGLMLSLANEVG-------------------------------- 227 (317)
T ss_dssp CCGGGSSCC--------------TTBHHHHHHHHHHHHHHHHHHHHHG--------------------------------
T ss_pred CcHHhcCCC--------------CCCcchHHHHHHHHHHHHHHHHHHh--------------------------------
Confidence 999988774 7788999999999999999999998
Q ss_pred cCCCCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccC---------CCchhh--HHHH---HHhhhhhccChH
Q psy13409 235 NLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFD---------SIIPGT--AWLY---QRVGGLFIKSPL 300 (330)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~---------~~~~~~--~~~~---~~~~~~~~~~~~ 300 (330)
+ .||+||+|+||+|+|++..... ...... .... .... .++.+|+
T Consensus 228 ------------------~---~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~pe 285 (317)
T 3oec_A 228 ------------------R---HNIRVNSVNPGAVNTEMALNEKLLKMFLPHLENPTREDAAELFSQLTLLP-IPWVEPE 285 (317)
T ss_dssp ------------------G---GTEEEEEEEECSBSSHHHHCHHHHHHHCTTCSSCCHHHHHHHHTTTCSSS-SSSBCHH
T ss_pred ------------------h---cCeEEEEEecCcccCccccchhhhhhhhhhccccchhHHHHHHhhhccCC-CCCCCHH
Confidence 5 7999999999999999864210 001100 1111 1111 2367999
Q ss_pred HHHHHHHHhhccccccccCceecccCC
Q psy13409 301 QGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 301 e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
|+|++++||+++ .++++||+.|...+
T Consensus 286 dvA~av~fL~s~-~a~~itG~~i~vdG 311 (317)
T 3oec_A 286 DVSNAVAWLASD-EARYIHGAAIPVDG 311 (317)
T ss_dssp HHHHHHHHHTSG-GGTTCCSCEEEEST
T ss_pred HHHHHHHHHcCC-cccCCCCCEEEECc
Confidence 999999999966 57899999987544
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-40 Score=299.50 Aligned_cols=234 Identities=22% Similarity=0.236 Sum_probs=195.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCC--CEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRG--ARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G--~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
||++|||||++|||++++++|+++| +.|++++|+.+.++++.+++ +.++.++.+|++|+++++++++++
T Consensus 2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~---------~~~~~~~~~Dv~~~~~v~~~~~~~ 72 (254)
T 3kzv_A 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKY---------GDRFFYVVGDITEDSVLKQLVNAA 72 (254)
T ss_dssp CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHH---------GGGEEEEESCTTSHHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHh---------CCceEEEECCCCCHHHHHHHHHHH
Confidence 7999999999999999999999985 78999999998877766554 457899999999999999999999
Q ss_pred HhcCCCeeEEEEcCCCCCC---CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 94 LDNESAIHLLINNAGVMMC---PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~---~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
.+.++++|+||||||...+ ..+.+.++|++.+++|+.+++++++.++|.|.+++ |+||++||..+..+.
T Consensus 73 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-g~iv~isS~~~~~~~------- 144 (254)
T 3kzv_A 73 VKGHGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN-GNVVFVSSDACNMYF------- 144 (254)
T ss_dssp HHHHSCCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCSCCCCSS-------
T ss_pred HHhcCCccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CeEEEEcCchhccCC-------
Confidence 9999999999999998533 36789999999999999999999999999998876 999999999887774
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
++...|++||+|+++|++++|.|+
T Consensus 145 -------~~~~~Y~asK~a~~~~~~~la~e~------------------------------------------------- 168 (254)
T 3kzv_A 145 -------SSWGAYGSSKAALNHFAMTLANEE------------------------------------------------- 168 (254)
T ss_dssp -------CCSHHHHHHHHHHHHHHHHHHHHC-------------------------------------------------
T ss_pred -------CCcchHHHHHHHHHHHHHHHHhhc-------------------------------------------------
Confidence 778899999999999999999986
Q ss_pred CCCCCCCceeEEEeeCcccccCcccccCCC-------chhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceec
Q psy13409 251 PPGANITNVNTYAVHPGVVDTELSRHFDSI-------IPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYY 323 (330)
Q Consensus 251 ~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~ 323 (330)
+||+||+|+||+|+|++.+..... ....+.........++.+|+|+|++++||+++..++++||++|
T Consensus 169 ------~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~p~dva~~v~~L~s~~~~~~itG~~i 242 (254)
T 3kzv_A 169 ------RQVKAIAVAPGIVDTDMQVNIRENVGPSSMSAEQLKMFRGLKENNQLLDSSVPATVYAKLALHGIPDGVNGQYL 242 (254)
T ss_dssp ------TTSEEEEEECSSCCCCCSCCCCCCCCTTTSCHHHHHHHHHHHTTC----CHHHHHHHHHHHHHCCCGGGTTCEE
T ss_pred ------cCcEEEEEeCCcccchhHHHhhcccCccccCHHHHHHHHHHHhcCCcCCcccHHHHHHHHHhhcccCCCCccEE
Confidence 479999999999999998765432 1111222222223338999999999999997743479999999
Q ss_pred ccCCC
Q psy13409 324 AKADL 328 (330)
Q Consensus 324 ~~~~~ 328 (330)
...+.
T Consensus 243 ~vdg~ 247 (254)
T 3kzv_A 243 SYNDP 247 (254)
T ss_dssp ETTCG
T ss_pred EecCc
Confidence 87654
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=308.61 Aligned_cols=232 Identities=19% Similarity=0.241 Sum_probs=200.0
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChh-------HHHHHHHHHHHhhcccCCCCeEEEEEccCCCH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLE-------KAETAADDIRTSLKDVKDAGEVVIRQLDLSSL 83 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~-------~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~ 83 (330)
.++++||++|||||++|||++++++|+++|++|++++|+.+ .+++..+++... +.++.++.||++++
T Consensus 4 ~m~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~ 77 (285)
T 3sc4_A 4 SMSLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEA------GGQALPIVGDIRDG 77 (285)
T ss_dssp --CCTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHH------TSEEEEEECCTTSH
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhc------CCcEEEEECCCCCH
Confidence 35689999999999999999999999999999999999976 466666666653 67899999999999
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCccc
Q psy13409 84 KSVRKCAQEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTW 161 (330)
Q Consensus 84 ~si~~l~~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~ 161 (330)
++++++++++.+.++++|+||||||+... ..+.+.++|++++++|+.+++++++.++|.|++++.|+||++||..+..
T Consensus 78 ~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~ 157 (285)
T 3sc4_A 78 DAVAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLE 157 (285)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCCCS
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhcc
Confidence 99999999999999999999999998754 3678999999999999999999999999999988889999999988765
Q ss_pred CCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCc
Q psy13409 162 GDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTN 241 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (330)
+. ++....|++||+|+++|+++||.|++
T Consensus 158 ~~-------------~~~~~~Y~asKaal~~~~~~la~e~~--------------------------------------- 185 (285)
T 3sc4_A 158 PK-------------WLRPTPYMMAKYGMTLCALGIAEELR--------------------------------------- 185 (285)
T ss_dssp GG-------------GSCSHHHHHHHHHHHHHHHHHHHHTG---------------------------------------
T ss_pred CC-------------CCCCchHHHHHHHHHHHHHHHHHHhc---------------------------------------
Confidence 52 24568999999999999999999998
Q ss_pred ccccccccCCCCCCCCceeEEEeeCc-ccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCc
Q psy13409 242 HYCKNVLFHPPGANITNVNTYAVHPG-VVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETG 320 (330)
Q Consensus 242 ~~~~~~~~~~~~~~~~~i~v~~v~pG-~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G 320 (330)
+ .||+||+|+|| +++|++.+...... .++++ +.+|+|+|++++||++++ + ++||
T Consensus 186 -----------~---~gI~vn~v~PG~~v~t~~~~~~~~~~-------~~~~r--~~~pedvA~~~~~l~s~~-~-~~tG 240 (285)
T 3sc4_A 186 -----------D---AGIASNTLWPRTTVATAAVQNLLGGD-------EAMAR--SRKPEVYADAAYVVLNKP-S-SYTG 240 (285)
T ss_dssp -----------G---GTCEEEEEECSSCBCCHHHHHHHTSC-------CCCTT--CBCTHHHHHHHHHHHTSC-T-TCCS
T ss_pred -----------c---cCcEEEEEeCCCccccHHHHhhcccc-------ccccC--CCCHHHHHHHHHHHhCCc-c-cccc
Confidence 5 79999999999 69999876543211 12344 889999999999999764 4 9999
Q ss_pred eeccc
Q psy13409 321 LYYAK 325 (330)
Q Consensus 321 ~~~~~ 325 (330)
+++..
T Consensus 241 ~~i~~ 245 (285)
T 3sc4_A 241 NTLLC 245 (285)
T ss_dssp CEEEH
T ss_pred eEEEE
Confidence 98753
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-40 Score=300.09 Aligned_cols=237 Identities=27% Similarity=0.314 Sum_probs=192.4
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh-hHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL-EKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~-~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.++++|++|||||++|||++++++|+++|++|++++|+. +++++ .+++ .+.++.++.+|+++++++++++
T Consensus 3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~---~~~~------~~~~~~~~~~Dv~~~~~v~~~~ 73 (249)
T 2ew8_A 3 QRLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEA---AIRN------LGRRVLTVKCDVSQPGDVEAFG 73 (249)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHH---HHHH------TTCCEEEEECCTTCHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHH---HHHh------cCCcEEEEEeecCCHHHHHHHH
Confidence 458999999999999999999999999999999999998 66554 3332 2567899999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 91 QEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
+++.+.++++|+||||||.... ..+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||..+..+.
T Consensus 74 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----- 148 (249)
T 2ew8_A 74 KQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKI----- 148 (249)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCC-----
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhccCC-----
Confidence 9999999999999999998653 257789999999999999999999999999988878999999999887764
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
+....|++||++++.|+++++.|++
T Consensus 149 ---------~~~~~Y~asK~a~~~~~~~la~e~~---------------------------------------------- 173 (249)
T 2ew8_A 149 ---------EAYTHYISTKAANIGFTRALASDLG---------------------------------------------- 173 (249)
T ss_dssp ---------SSCHHHHHHHHHHHHHHHHHHHHHG----------------------------------------------
T ss_pred ---------CCchhHHHHHHHHHHHHHHHHHHHH----------------------------------------------
Confidence 6788999999999999999999998
Q ss_pred cCCCCCCCCceeEEEeeCcccccCccc-ccCCC-chhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSR-HFDSI-IPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+ .||+||+|+||+|+|++.. ..... ....+....++++ +.+|+|+|++++||+++ .++++||++|...
T Consensus 174 ----~---~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~dva~~~~~l~s~-~~~~~tG~~~~vd 243 (249)
T 2ew8_A 174 ----K---DGITVNAIAPSLVRTATTEASALSAMFDVLPNMLQAIPR--LQVPLDLTGAAAFLASD-DASFITGQTLAVD 243 (249)
T ss_dssp ----G---GTEEEEEEEECCC------------------CTTSSSCS--CCCTHHHHHHHHHHTSG-GGTTCCSCEEEES
T ss_pred ----h---cCcEEEEEecCcCcCccchhccccchhhHHHHhhCccCC--CCCHHHHHHHHHHHcCc-ccCCCCCcEEEEC
Confidence 5 7999999999999999876 32211 0000000023344 78999999999999965 5679999998654
Q ss_pred C
Q psy13409 327 D 327 (330)
Q Consensus 327 ~ 327 (330)
+
T Consensus 244 G 244 (249)
T 2ew8_A 244 G 244 (249)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-40 Score=309.61 Aligned_cols=239 Identities=23% Similarity=0.243 Sum_probs=200.8
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh--hHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL--EKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRK 88 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~--~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~ 88 (330)
+.+++||++|||||++|||++++++|+++|++|++++|+. ..++++.+.++. .+.++.++.+|++|++++++
T Consensus 44 ~~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Dv~d~~~v~~ 117 (294)
T 3r3s_A 44 SGRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEE------CGRKAVLLPGDLSDESFARS 117 (294)
T ss_dssp CSTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHH------TTCCEEECCCCTTSHHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHH------cCCcEEEEEecCCCHHHHHH
Confidence 4578999999999999999999999999999999999873 345555555544 36789999999999999999
Q ss_pred HHHHHHhcCCCeeEEEEcCCCCCC---CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCC
Q psy13409 89 CAQEILDNESAIHLLINNAGVMMC---PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGS 165 (330)
Q Consensus 89 l~~~i~~~~g~iDvlInnAG~~~~---~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~ 165 (330)
+++++.+.++++|+||||||.... ..+.+.++|++.+++|+.+++++++.++|.|.+ +|+||++||..+..+.
T Consensus 118 ~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~--~g~Iv~isS~~~~~~~-- 193 (294)
T 3r3s_A 118 LVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPK--GASIITTSSIQAYQPS-- 193 (294)
T ss_dssp HHHHHHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCT--TCEEEEECCGGGTSCC--
T ss_pred HHHHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhc--CCEEEEECChhhccCC--
Confidence 999999999999999999998542 367899999999999999999999999998854 4899999999887774
Q ss_pred CcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccc
Q psy13409 166 MHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCK 245 (330)
Q Consensus 166 ~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (330)
+....|++||+|+++|+++++.|++
T Consensus 194 ------------~~~~~Y~asKaa~~~l~~~la~e~~------------------------------------------- 218 (294)
T 3r3s_A 194 ------------PHLLDYAATKAAILNYSRGLAKQVA------------------------------------------- 218 (294)
T ss_dssp ------------TTCHHHHHHHHHHHHHHHHHHHHHG-------------------------------------------
T ss_pred ------------CCchHHHHHHHHHHHHHHHHHHHHh-------------------------------------------
Confidence 7788999999999999999999998
Q ss_pred ccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCceec
Q psy13409 246 NVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYY 323 (330)
Q Consensus 246 ~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~ 323 (330)
+ .||+||+|+||+|+|++............... .++++ +.+|+|+|++++||+++ .++++||+.|
T Consensus 219 -------~---~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~~r--~~~p~dvA~~v~~L~s~-~~~~itG~~i 285 (294)
T 3r3s_A 219 -------E---KGIRVNIVAPGPIWTALQISGGQTQDKIPQFGQQTPMKR--AGQPAELAPVYVYLASQ-ESSYVTAEVH 285 (294)
T ss_dssp -------G---GTCEEEEEEECSBCSHHHHTTTSCGGGSTTTTTTSTTSS--CBCGGGGHHHHHHHHSG-GGTTCCSCEE
T ss_pred -------h---cCeEEEEEecCcCccccccccCCCHHHHHHHHhcCCCCC--CcCHHHHHHHHHHHhCc-cccCCCCCEE
Confidence 5 79999999999999998433222211111121 34444 89999999999999966 5789999998
Q ss_pred ccCC
Q psy13409 324 AKAD 327 (330)
Q Consensus 324 ~~~~ 327 (330)
...+
T Consensus 286 ~vdG 289 (294)
T 3r3s_A 286 GVCG 289 (294)
T ss_dssp EEST
T ss_pred EECC
Confidence 7654
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-40 Score=300.44 Aligned_cols=239 Identities=26% Similarity=0.288 Sum_probs=197.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhH-HHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEK-AETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~-l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
|+||++|||||++|||++++++|+++|++|++++|+.+. ++++.+++.... +.++.++.+|++|++++++++++
T Consensus 2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~ 76 (260)
T 1x1t_A 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQH-----GVKVLYDGADLSKGEAVRGLVDN 76 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHH-----TSCEEEECCCTTSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhcc-----CCcEEEEECCCCCHHHHHHHHHH
Confidence 689999999999999999999999999999999999887 777777765431 45788999999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 93 ILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
+.+.++++|+||||||.... ..+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||..+..+.
T Consensus 77 ~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------- 149 (260)
T 1x1t_A 77 AVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVAS------- 149 (260)
T ss_dssp HHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC-------
T ss_pred HHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECcHHhCcCC-------
Confidence 99999999999999997653 256789999999999999999999999999988878999999999887764
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
++...|++||++++.|+++++.|++
T Consensus 150 -------~~~~~Y~~sK~a~~~~~~~la~e~~------------------------------------------------ 174 (260)
T 1x1t_A 150 -------ANKSAYVAAKHGVVGFTKVTALETA------------------------------------------------ 174 (260)
T ss_dssp -------TTCHHHHHHHHHHHHHHHHHHHHHT------------------------------------------------
T ss_pred -------CCCchHHHHHHHHHHHHHHHHHHhc------------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred CCCCCCCceeEEEeeCcccccCcccccCCC---------chhhHHH-H--HHhhhhhccChHHHHHHHHHhhcccccccc
Q psy13409 251 PPGANITNVNTYAVHPGVVDTELSRHFDSI---------IPGTAWL-Y--QRVGGLFIKSPLQGAQTTLYCALDKKCERE 318 (330)
Q Consensus 251 ~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~---------~~~~~~~-~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~ 318 (330)
+ .||+||+|+||+|+|++....... ....... . .+.++ +.+|+|+|++++||+++ .++++
T Consensus 175 --~---~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~p~dva~~~~~l~s~-~~~~~ 246 (260)
T 1x1t_A 175 --G---QGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSEKQPSLQ--FVTPEQLGGTAVFLASD-AAAQI 246 (260)
T ss_dssp --T---TTEEEEEEEECCBCC------------------------CHHHHCTTCC--CBCHHHHHHHHHHHHSG-GGTTC
T ss_pred --c---CCEEEEEEeecCccCchHHHhhhhhccccCCchHHHHHHHhhccCCCCC--CcCHHHHHHHHHHHhCh-hhcCC
Confidence 6 799999999999999987653211 0111111 1 23333 88999999999999965 56799
Q ss_pred CceecccCC
Q psy13409 319 TGLYYAKAD 327 (330)
Q Consensus 319 ~G~~~~~~~ 327 (330)
||+.|...+
T Consensus 247 tG~~~~vdg 255 (260)
T 1x1t_A 247 TGTTVSVDG 255 (260)
T ss_dssp CSCEEEEST
T ss_pred CCCEEEECC
Confidence 999986543
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-39 Score=299.03 Aligned_cols=240 Identities=20% Similarity=0.204 Sum_probs=201.1
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
+++++|++|||||++|||++++++|+++|++|++++|+.+++++..+++.... .+.++.++.+|++|+++++++++
T Consensus 3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~v~~~~~ 78 (260)
T 2z1n_A 3 LGIQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLV----SGAQVDIVAGDIREPGDIDRLFE 78 (260)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHS----TTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC----CCCeEEEEEccCCCHHHHHHHHH
Confidence 46899999999999999999999999999999999999988888777775421 12378899999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 92 EILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
++.+.++ +|+||||||.... ..+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||..+..+.
T Consensus 79 ~~~~~~g-id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------ 151 (260)
T 2z1n_A 79 KARDLGG-ADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGWGRMVYIGSVTLLRPW------ 151 (260)
T ss_dssp HHHHTTC-CSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC------
T ss_pred HHHHhcC-CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhcCCC------
Confidence 9999999 9999999997643 257788999999999999999999999999988888999999999887664
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
+....|++||++++.|+++++.|++
T Consensus 152 --------~~~~~Y~~sK~a~~~~~~~la~e~~----------------------------------------------- 176 (260)
T 2z1n_A 152 --------QDLALSNIMRLPVIGVVRTLALELA----------------------------------------------- 176 (260)
T ss_dssp --------TTBHHHHHHTHHHHHHHHHHHHHHG-----------------------------------------------
T ss_pred --------CCCchhHHHHHHHHHHHHHHHHHHh-----------------------------------------------
Confidence 6788999999999999999999998
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccc----------cCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccc
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRH----------FDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCER 317 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~----------~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~ 317 (330)
+ .||+||+|+||+|+|++... .... ....... .++++ +.+|+|+|++++||+++ .+++
T Consensus 177 ---~---~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~r--~~~~~dva~~v~~l~s~-~~~~ 246 (260)
T 2z1n_A 177 ---P---HGVTVNAVLPSLILTDRVRSLAEERARRSGITVE-EALKSMASRIPMGR--VGKPEELASVVAFLASE-KASF 246 (260)
T ss_dssp ---G---GTEEEEEEEECHHHHCCCC------------------------CCTTSS--CCCHHHHHHHHHHHTSG-GGTT
T ss_pred ---h---hCeEEEEEEECCcccchhhhhhhhhhcccCCcHH-HHHHHHHhcCCCCC--ccCHHHHHHHHHHHhCc-cccC
Confidence 5 79999999999999998762 1110 0011111 23344 78999999999999966 4679
Q ss_pred cCceecccCC
Q psy13409 318 ETGLYYAKAD 327 (330)
Q Consensus 318 ~~G~~~~~~~ 327 (330)
+||+.|...+
T Consensus 247 ~tG~~i~vdG 256 (260)
T 2z1n_A 247 ITGAVIPVDG 256 (260)
T ss_dssp CCSCEEEEST
T ss_pred CCCCEEEeCC
Confidence 9999987543
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-40 Score=299.63 Aligned_cols=238 Identities=21% Similarity=0.243 Sum_probs=195.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
+|+||++|||||++|||++++++|+++|++|++++|+.+++++..+++... +.++.++.+|++|+++++++++.
T Consensus 2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~~~~ 75 (260)
T 2qq5_A 2 PMNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSL------GGQCVPVVCDSSQESEVRSLFEQ 75 (260)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH------SSEEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHc------CCceEEEECCCCCHHHHHHHHHH
Confidence 478999999999999999999999999999999999998888888777653 56889999999999999999999
Q ss_pred HHhc-CCCeeEEEEcCC--CC-------CCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccC
Q psy13409 93 ILDN-ESAIHLLINNAG--VM-------MCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWG 162 (330)
Q Consensus 93 i~~~-~g~iDvlInnAG--~~-------~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~ 162 (330)
+.+. ++++|+|||||| .. .+..+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||..+..+
T Consensus 76 ~~~~~~g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~ 155 (260)
T 2qq5_A 76 VDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSLQY 155 (260)
T ss_dssp HHHHHTTCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGTCCEEEEECCGGGTSC
T ss_pred HHHhcCCCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcCCcEEEEEcChhhcCC
Confidence 8876 899999999995 32 2335778899999999999999999999999998887899999999887654
Q ss_pred CCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcc
Q psy13409 163 DGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNH 242 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (330)
.+...|++||+|+++|+++++.|++
T Consensus 156 ---------------~~~~~Y~asK~a~~~~~~~la~e~~---------------------------------------- 180 (260)
T 2qq5_A 156 ---------------MFNVPYGVGKAACDKLAADCAHELR---------------------------------------- 180 (260)
T ss_dssp ---------------CSSHHHHHHHHHHHHHHHHHHHHHG----------------------------------------
T ss_pred ---------------CCCCchHHHHHHHHHHHHHHHHHhc----------------------------------------
Confidence 3457899999999999999999998
Q ss_pred cccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchh--hH---HHHHHhhhhhccChHHHHHHHHHhhccccccc
Q psy13409 243 YCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPG--TA---WLYQRVGGLFIKSPLQGAQTTLYCALDKKCER 317 (330)
Q Consensus 243 ~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~ 317 (330)
+ .||+||+|+||+|+|++.......... .. ....++++ ..+|+|+|++++||++++...+
T Consensus 181 ----------~---~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~pe~va~~v~~l~s~~~~~~ 245 (260)
T 2qq5_A 181 ----------R---HGVSCVSLWPGIVQTELLKEHMAKEEVLQDPVLKQFKSAFSS--AETTELSGKCVVALATDPNILS 245 (260)
T ss_dssp ----------G---GTCEEEEEECCCSCTTTC----------------------CH--HHHHHHHHHHHHHHHTCTTGGG
T ss_pred ----------c---CCeEEEEEecCccccHHHHHhhccccccchhHHHHHHhhhcc--CCCHHHHHHHHHHHhcCccccc
Confidence 5 799999999999999987653221110 00 01123444 5799999999999998754458
Q ss_pred cCceecccC
Q psy13409 318 ETGLYYAKA 326 (330)
Q Consensus 318 ~~G~~~~~~ 326 (330)
+||++|...
T Consensus 246 itG~~i~~~ 254 (260)
T 2qq5_A 246 LSGKVLPSC 254 (260)
T ss_dssp GTTCEEEHH
T ss_pred ccceeechh
Confidence 999998643
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=308.90 Aligned_cols=252 Identities=19% Similarity=0.215 Sum_probs=202.2
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecC------------hhHHHHHHHHHHHhhcccCCCCeEEEEE
Q psy13409 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRS------------LEKAETAADDIRTSLKDVKDAGEVVIRQ 77 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~------------~~~l~~~~~~l~~~~~~~~~~~~v~~i~ 77 (330)
.|.+++||++|||||++|||++++++|+++|++|++++|+ ...+++...++.. .+.++.++.
T Consensus 4 ~m~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 77 (287)
T 3pxx_A 4 SMGRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEK------TGRKAYTAE 77 (287)
T ss_dssp SCCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHH------TTSCEEEEE
T ss_pred cccccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHh------cCCceEEEE
Confidence 4557999999999999999999999999999999999998 6667777666655 367899999
Q ss_pred ccCCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCC
Q psy13409 78 LDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSL 157 (330)
Q Consensus 78 ~Dls~~~si~~l~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~ 157 (330)
+|++++++++++++++.+.++++|+||||||+.....+.+.++|++.+++|+.+++++++.++|.| .+.|+||++||.
T Consensus 78 ~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~--~~~g~iv~isS~ 155 (287)
T 3pxx_A 78 VDVRDRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYL--TSGASIITTGSV 155 (287)
T ss_dssp CCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGC--CTTCEEEEECCH
T ss_pred ccCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHh--hcCcEEEEeccc
Confidence 999999999999999999999999999999987655557889999999999999999999999998 346899999998
Q ss_pred CcccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCC
Q psy13409 158 AHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQ 237 (330)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (330)
.+..+... .+.....+.++...|++||+|+++|++++|.|++
T Consensus 156 ~~~~~~~~---~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~----------------------------------- 197 (287)
T 3pxx_A 156 AGLIAAAQ---PPGAGGPQGPGGAGYSYAKQLVDSYTLQLAAQLA----------------------------------- 197 (287)
T ss_dssp HHHHHHHC---CC-----CHHHHHHHHHHHHHHHHHHHHHHHHHG-----------------------------------
T ss_pred hhcccccc---cccccccCCCccchHHHHHHHHHHHHHHHHHHHh-----------------------------------
Confidence 87654210 0111112225677899999999999999999998
Q ss_pred CCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccC------C---CchhhHHHH-----HHhhhhhccChHHHH
Q psy13409 238 TPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFD------S---IIPGTAWLY-----QRVGGLFIKSPLQGA 303 (330)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~------~---~~~~~~~~~-----~~~~~~~~~~~~e~a 303 (330)
+ .||+||+|+||+|+|++.+... . .....+... ...+ .++.+|+|+|
T Consensus 198 ---------------~---~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~dva 258 (287)
T 3pxx_A 198 ---------------P---QSIRANVIHPTNVNTDMLNSAPMYRQFRPDLEAPSRADALLAFPAMQAMP-TPYVEASDIS 258 (287)
T ss_dssp ---------------G---GTCEEEEEEESSBSSTTTSSHHHHHHHCTTSSSCCHHHHHHHGGGGCSSS-CSCBCHHHHH
T ss_pred ---------------h---cCcEEEEEecCccccccccccchhhhhccccccchhHHHHhhhhhhcccC-CCCCCHHHHH
Confidence 5 7999999999999999876421 0 011111110 1111 3478999999
Q ss_pred HHHHHhhccccccccCceecccCC
Q psy13409 304 QTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 304 ~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
++++||+++ .++++||+.|...+
T Consensus 259 ~~v~fL~s~-~a~~itG~~i~vdG 281 (287)
T 3pxx_A 259 NAVCFLASD-ESRYVTGLQFKVDA 281 (287)
T ss_dssp HHHHHHHSG-GGTTCCSCEEEEST
T ss_pred hhHheecch-hhcCCCCceEeECc
Confidence 999999966 57899999987543
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-40 Score=298.91 Aligned_cols=237 Identities=22% Similarity=0.232 Sum_probs=200.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhH--HHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEK--AETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~--l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
++|++|||||++|||++++++|+++|++|++++|+.+. +++..++++. .+.++.++.+|+++++++++++++
T Consensus 1 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~~Dv~~~~~v~~~~~~ 74 (258)
T 3a28_C 1 MSKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEA------ADQKAVFVGLDVTDKANFDSAIDE 74 (258)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHT------TTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHh------cCCcEEEEEccCCCHHHHHHHHHH
Confidence 37999999999999999999999999999999999887 7777766654 256789999999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCC-CeEEEEcCCCcccCCCCCccc
Q psy13409 93 ILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAP-ARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~-g~IV~iSS~~~~~~~~~~~~~ 169 (330)
+.+.++++|+||||||.... ..+.+.++|++.+++|+.+++++++.++|.|.+++. |+||++||..+..+.
T Consensus 75 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------ 148 (258)
T 3a28_C 75 AAEKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQGF------ 148 (258)
T ss_dssp HHHHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGTSCC------
T ss_pred HHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcchhccCC------
Confidence 99999999999999998653 257789999999999999999999999999988776 999999999887764
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
+....|++||+++++|+++++.|++
T Consensus 149 --------~~~~~Y~~sK~a~~~~~~~la~e~~----------------------------------------------- 173 (258)
T 3a28_C 149 --------PILSAYSTTKFAVRGLTQAAAQELA----------------------------------------------- 173 (258)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHHG-----------------------------------------------
T ss_pred --------CCchhHHHHHHHHHHHHHHHHHHHH-----------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccC--------CC-chhhHHHH--HHhhhhhccChHHHHHHHHHhhcccccccc
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFD--------SI-IPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERE 318 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~--------~~-~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~ 318 (330)
+ .||+||+|+||+|+|++..... .. ....+... .++++ +.+|+|+|++++||+++ .++++
T Consensus 174 ---~---~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r--~~~p~dvA~~v~~l~s~-~~~~~ 244 (258)
T 3a28_C 174 ---P---KGHTVNAYAPGIVGTGMWEQIDAELSKINGKPIGENFKEYSSSIALGR--PSVPEDVAGLVSFLASE-NSNYV 244 (258)
T ss_dssp ---G---GTCEEEEEEECCBCSHHHHHHHHHHHHHHCCCTTHHHHHHHTTCTTSS--CBCHHHHHHHHHHHHSG-GGTTC
T ss_pred ---h---hCeEEEEEECCccCChhhhhhhhhhccccCCchHHHHHHHHhcCCCCC--ccCHHHHHHHHHHHhCc-ccCCC
Confidence 5 7999999999999999865421 10 11111121 23344 88999999999999965 56799
Q ss_pred CceecccCC
Q psy13409 319 TGLYYAKAD 327 (330)
Q Consensus 319 ~G~~~~~~~ 327 (330)
||+.|...+
T Consensus 245 tG~~i~vdG 253 (258)
T 3a28_C 245 TGQVMLVDG 253 (258)
T ss_dssp CSCEEEESS
T ss_pred CCCEEEECC
Confidence 999987543
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=302.09 Aligned_cols=240 Identities=28% Similarity=0.340 Sum_probs=202.9
Q ss_pred cCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHH
Q psy13409 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRK 88 (330)
Q Consensus 9 ~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~ 88 (330)
..++++++|++|||||++|||++++++|+++|++|++++|+.+++++..+++.. .+++.++.+|++|++++++
T Consensus 22 ~~~~~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~-------~~~~~~~~~Dv~d~~~v~~ 94 (276)
T 2b4q_A 22 HPYFSLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSA-------YGDCQAIPADLSSEAGARR 94 (276)
T ss_dssp CTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTT-------SSCEEECCCCTTSHHHHHH
T ss_pred ccccCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-------cCceEEEEeeCCCHHHHHH
Confidence 344568999999999999999999999999999999999999888777766643 1278899999999999999
Q ss_pred HHHHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCC----CeEEEEcCCCcccC
Q psy13409 89 CAQEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAP----ARIINLSSLAHTWG 162 (330)
Q Consensus 89 l~~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~----g~IV~iSS~~~~~~ 162 (330)
+++++.+.++++|+||||||.... ..+.+.++|++.+++|+.+++++++.++|.|.+++. |+||++||..+..+
T Consensus 95 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~~ 174 (276)
T 2b4q_A 95 LAQALGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISA 174 (276)
T ss_dssp HHHHHHHHCSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTCC
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcCC
Confidence 999999999999999999998653 357788999999999999999999999999988765 89999999988766
Q ss_pred CCCCcccccccccCCCcch-hhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCc
Q psy13409 163 DGSMHFEDINLEKGYSATG-AYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTN 241 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~-~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (330)
. +... .|++||+|++.|+++++.|++
T Consensus 175 ~--------------~~~~~~Y~asK~a~~~~~~~la~e~~--------------------------------------- 201 (276)
T 2b4q_A 175 M--------------GEQAYAYGPSKAALHQLSRMLAKELV--------------------------------------- 201 (276)
T ss_dssp C--------------CCSCTTHHHHHHHHHHHHHHHHHHHG---------------------------------------
T ss_pred C--------------CCCccccHHHHHHHHHHHHHHHHHhc---------------------------------------
Confidence 4 4556 899999999999999999998
Q ss_pred ccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH----HHhhhhhccChHHHHHHHHHhhccccccc
Q psy13409 242 HYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY----QRVGGLFIKSPLQGAQTTLYCALDKKCER 317 (330)
Q Consensus 242 ~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~e~a~~~~~l~~~~~~~~ 317 (330)
+ .||+||+|+||+|+|++....... ..+... .++++ +.+|+|+|++++||+++ .+++
T Consensus 202 -----------~---~gI~vn~v~PG~v~T~~~~~~~~~--~~~~~~~~~~~p~~r--~~~p~dvA~~v~~l~s~-~~~~ 262 (276)
T 2b4q_A 202 -----------G---EHINVNVIAPGRFPSRMTRHIAND--PQALEADSASIPMGR--WGRPEEMAALAISLAGT-AGAY 262 (276)
T ss_dssp -----------G---GTEEEEEEEECCCCSTTTHHHHHC--HHHHHHHHHTSTTSS--CCCHHHHHHHHHHHHSG-GGTT
T ss_pred -----------c---cCeEEEEEEeccCcCcchhhcchh--HHHHHHhhcCCCCCC--cCCHHHHHHHHHHHhCc-cccC
Confidence 5 799999999999999987543211 111111 13333 88999999999999966 4679
Q ss_pred cCceecccCC
Q psy13409 318 ETGLYYAKAD 327 (330)
Q Consensus 318 ~~G~~~~~~~ 327 (330)
+||++|...+
T Consensus 263 ~tG~~i~vdG 272 (276)
T 2b4q_A 263 MTGNVIPIDG 272 (276)
T ss_dssp CCSCEEEEST
T ss_pred CCCCEEEeCC
Confidence 9999987543
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-39 Score=297.26 Aligned_cols=239 Identities=27% Similarity=0.319 Sum_probs=180.1
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.+++++|++|||||++|||++++++|+++|++|++++|+.+.+++..+++.. .+.++.++.+|++|++++++++
T Consensus 4 ~~~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~------~~~~~~~~~~D~~~~~~~~~~~ 77 (253)
T 3qiv_A 4 SMRFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVA------DGGTAISVAVDVSDPESAKAMA 77 (253)
T ss_dssp -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH------TTCEEEEEECCTTSHHHHHHHH
T ss_pred ccccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh------cCCcEEEEEccCCCHHHHHHHH
Confidence 4578999999999999999999999999999999999999999988888876 3678999999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCC-----CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCC
Q psy13409 91 QEILDNESAIHLLINNAGVMM-----CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGS 165 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~-----~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~ 165 (330)
+++.+.++++|++|||||... +..+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||..+.
T Consensus 78 ~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~----- 152 (253)
T 3qiv_A 78 DRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRGGGAIVNQSSTAAW----- 152 (253)
T ss_dssp HHHHHHHSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC---------
T ss_pred HHHHHHcCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEECCcccc-----
Confidence 999999999999999999842 1257789999999999999999999999999999888999999998764
Q ss_pred CcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccc
Q psy13409 166 MHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCK 245 (330)
Q Consensus 166 ~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (330)
.....|++||+|+++|+++++.|++
T Consensus 153 ------------~~~~~Y~asK~a~~~~~~~la~e~~------------------------------------------- 177 (253)
T 3qiv_A 153 ------------LYSNYYGLAKVGINGLTQQLSRELG------------------------------------------- 177 (253)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTT-------------------------------------------
T ss_pred ------------CCCchhHHHHHHHHHHHHHHHHHHh-------------------------------------------
Confidence 2346799999999999999999998
Q ss_pred ccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceeccc
Q psy13409 246 NVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAK 325 (330)
Q Consensus 246 ~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~ 325 (330)
. +||+||+|+||+|+|++.+...... ..+.........++.+|+|+|++++||+++ .++++||+.|..
T Consensus 178 -------~---~gi~v~~v~PG~v~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~~dva~~~~~l~s~-~~~~~tG~~~~v 245 (253)
T 3qiv_A 178 -------G---RNIRINAIAPGPIDTEANRTTTPKE-MVDDIVKGLPLSRMGTPDDLVGMCLFLLSD-EASWITGQIFNV 245 (253)
T ss_dssp -------T---TTEEEEEEEC--------------------------------CCHHHHHHHHHHSG-GGTTCCSCEEEC
T ss_pred -------h---cCeEEEEEEecCCcccchhhcCcHH-HHHHHhccCCCCCCCCHHHHHHHHHHHcCc-cccCCCCCEEEE
Confidence 6 8999999999999999876543321 122222222223388999999999999966 567999999976
Q ss_pred CC
Q psy13409 326 AD 327 (330)
Q Consensus 326 ~~ 327 (330)
..
T Consensus 246 dg 247 (253)
T 3qiv_A 246 DG 247 (253)
T ss_dssp --
T ss_pred CC
Confidence 54
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=296.80 Aligned_cols=233 Identities=21% Similarity=0.246 Sum_probs=196.2
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
++++|++|||||++|||++++++|+++|++|++++|+.+++++..+++ + +.++.+|++|++++++++++
T Consensus 2 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~--~~~~~~D~~~~~~~~~~~~~ 70 (245)
T 1uls_A 2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV---------G--AHPVVMDVADPASVERGFAE 70 (245)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT---------T--CEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---------C--CEEEEecCCCHHHHHHHHHH
Confidence 578999999999999999999999999999999999987766544321 2 67899999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 93 ILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
+.+.++++|+||||||..... .+.+.++|++++++|+.+++++++.++|.|.+++.|+||++||.. ..+.
T Consensus 71 ~~~~~g~id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~-~~~~------- 142 (245)
T 1uls_A 71 ALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRV-YLGN------- 142 (245)
T ss_dssp HHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGG-GGCC-------
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEccch-hcCC-------
Confidence 999999999999999986532 577889999999999999999999999999888789999999987 6664
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
++...|++||+++++|+++++.|++
T Consensus 143 -------~~~~~Y~asK~a~~~~~~~la~e~~------------------------------------------------ 167 (245)
T 1uls_A 143 -------LGQANYAASMAGVVGLTRTLALELG------------------------------------------------ 167 (245)
T ss_dssp -------TTCHHHHHHHHHHHHHHHHHHHHHG------------------------------------------------
T ss_pred -------CCchhHHHHHHHHHHHHHHHHHHHh------------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred CCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 251 PPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 251 ~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
+ .||+||+|+||+|+|++...... ...+.........++.+|+|+|+.++||+++ .++++||+.|...+
T Consensus 168 --~---~gi~v~~v~PG~v~t~~~~~~~~--~~~~~~~~~~p~~~~~~~~dvA~~v~~l~s~-~~~~~tG~~~~vdg 236 (245)
T 1uls_A 168 --R---WGIRVNTLAPGFIETRMTAKVPE--KVREKAIAATPLGRAGKPLEVAYAALFLLSD-ESSFITGQVLFVDG 236 (245)
T ss_dssp --G---GTEEEEEEEECSBCCTTTSSSCH--HHHHHHHHTCTTCSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEEST
T ss_pred --H---hCeEEEEEEeCcCcCcchhhcCH--HHHHHHHhhCCCCCCcCHHHHHHHHHHHhCc-hhcCCcCCEEEECC
Confidence 5 79999999999999998764321 1112222212222388999999999999965 56799999986543
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=300.36 Aligned_cols=231 Identities=26% Similarity=0.317 Sum_probs=189.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
+++|++|||||++|||++++++|+++|++|++++|+.++++++.+++... +.++.++.+|++++++++++++++
T Consensus 2 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dv~d~~~v~~~~~~~ 75 (264)
T 3tfo_A 2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDA------GGTALAQVLDVTDRHSVAAFAQAA 75 (264)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT------TCEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEcCCCCHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999988888763 678999999999999999999999
Q ss_pred HhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccc
Q psy13409 94 LDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDI 171 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~ 171 (330)
.+.++++|+||||||+.... .+.+.++|++++++|+.+++++++.++|.|.+++.|+||++||.++..+.
T Consensus 76 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~-------- 147 (264)
T 3tfo_A 76 VDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSGQIINIGSIGALSVV-------- 147 (264)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCC--------
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEEcCHHHcccC--------
Confidence 99999999999999987533 67899999999999999999999999999998888999999999988774
Q ss_pred ccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCC
Q psy13409 172 NLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHP 251 (330)
Q Consensus 172 ~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (330)
+....|++||+|+++|+++++.|+
T Consensus 148 ------~~~~~Y~asKaal~~l~~~la~e~-------------------------------------------------- 171 (264)
T 3tfo_A 148 ------PTAAVYCATKFAVRAISDGLRQES-------------------------------------------------- 171 (264)
T ss_dssp ------TTCHHHHHHHHHHHHHHHHHHHHC--------------------------------------------------
T ss_pred ------CCChhHHHHHHHHHHHHHHHHHhC--------------------------------------------------
Confidence 778899999999999999999984
Q ss_pred CCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceec
Q psy13409 252 PGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYY 323 (330)
Q Consensus 252 ~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~ 323 (330)
+|||||+|+||+|+|++.......... ... .... ....+|+|+|++++||++++. ++++|+.+
T Consensus 172 -----~gIrvn~v~PG~v~T~~~~~~~~~~~~-~~~-~~~~-~~~~~pedvA~~v~~l~s~~~-~~~~~~i~ 234 (264)
T 3tfo_A 172 -----TNIRVTCVNPGVVESELAGTITHEETM-AAM-DTYR-AIALQPADIARAVRQVIEAPQ-SVDTTEIT 234 (264)
T ss_dssp -----SSEEEEEEEECCC--------------------------CCCHHHHHHHHHHHHHSCT-TEEEEEEE
T ss_pred -----CCCEEEEEecCCCcCcccccccchhHH-HHH-Hhhh-ccCCCHHHHHHHHHHHhcCCc-cCccceEE
Confidence 489999999999999998765332111 111 1111 125799999999999998754 56677654
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-39 Score=296.90 Aligned_cols=233 Identities=27% Similarity=0.325 Sum_probs=195.5
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
.|.+++||++|||||++|||++++++|+++|++|++++|+.+++++..+++.. .+.++.++.+|++++++++++
T Consensus 23 ~m~~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~------~~~~~~~~~~D~~~~~~v~~~ 96 (262)
T 3rkr_A 23 HMSSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVA------AGGEAESHACDLSHSDAIAAF 96 (262)
T ss_dssp --CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH------TTCEEEEEECCTTCHHHHHHH
T ss_pred hhhccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH------hCCceeEEEecCCCHHHHHHH
Confidence 34568999999999999999999999999999999999999999888888876 367899999999999999999
Q ss_pred HHHHHhcCCCeeEEEEcCCCCC---CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCC
Q psy13409 90 AQEILDNESAIHLLINNAGVMM---CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSM 166 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~---~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~ 166 (330)
++++.+.++++|+||||||... +..+.+.++|++.+++|+.+++.+++.++|.|.+++.|+||++||..+..+.
T Consensus 97 ~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~--- 173 (262)
T 3rkr_A 97 ATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSLAGKNPV--- 173 (262)
T ss_dssp HHHHHHHHSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEEECSSCSSCCC---
T ss_pred HHHHHHhcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCC---
Confidence 9999999999999999999843 2367889999999999999999999999999998888999999999987774
Q ss_pred cccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccc
Q psy13409 167 HFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKN 246 (330)
Q Consensus 167 ~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (330)
++...|++||+|+++|+++++.|++
T Consensus 174 -----------~~~~~Y~asKaa~~~l~~~la~e~~-------------------------------------------- 198 (262)
T 3rkr_A 174 -----------ADGAAYTASKWGLNGLMTSAAEELR-------------------------------------------- 198 (262)
T ss_dssp -----------TTCHHHHHHHHHHHHHHHHHHHHHG--------------------------------------------
T ss_pred -----------CCCchHHHHHHHHHHHHHHHHHHhh--------------------------------------------
Confidence 6788999999999999999999998
Q ss_pred cccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 247 VLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 247 ~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
. .||+||+|+||+|+|++....... .+..+ +.+|+|+|++++||+++. ..+++|+.+-..
T Consensus 199 ------~---~gi~v~~v~PG~v~t~~~~~~~~~--------~~~~~--~~~p~dvA~~v~~l~s~~-~~~~~g~~~i~p 258 (262)
T 3rkr_A 199 ------Q---HQVRVSLVAPGSVRTEFGVGLSAK--------KSALG--AIEPDDIADVVALLATQA-DQSFISEVLVRP 258 (262)
T ss_dssp ------G---GTCEEEEEEECCC--------------------------CCCHHHHHHHHHHHHTCC-TTCCEEEEEEEC
T ss_pred ------h---cCcEEEEEecCCCcCCcccccccc--------ccccc--CCCHHHHHHHHHHHhcCc-cccccCcEEecc
Confidence 5 799999999999999987654321 12223 689999999999999775 457888776443
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=297.16 Aligned_cols=238 Identities=25% Similarity=0.266 Sum_probs=201.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
+|++|||||++|||++++++|+++|++|++++|+.++++++.+++... +.++.++.+|++|+++++++++++.+
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~v~~~~~~~~~ 75 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQA------GGHAVAVKVDVSDRDQVFAAVEQARK 75 (256)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999998888887777652 56789999999999999999999999
Q ss_pred cCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCCcccccc
Q psy13409 96 NESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSMHFEDIN 172 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~~~~~~~ 172 (330)
.++++|+||||||.... ..+.+.++|++.+++|+.+++++++.++|.|.+++ .|+||++||..+..+.
T Consensus 76 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------- 146 (256)
T 1geg_A 76 TLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGN--------- 146 (256)
T ss_dssp HTTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC---------
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC---------
Confidence 99999999999997643 35778999999999999999999999999998877 7899999999887774
Q ss_pred cccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCC
Q psy13409 173 LEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPP 252 (330)
Q Consensus 173 ~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (330)
+....|++||+|+++|+++++.|++
T Consensus 147 -----~~~~~Y~asK~a~~~~~~~la~e~~-------------------------------------------------- 171 (256)
T 1geg_A 147 -----PELAVYSSSKFAVRGLTQTAARDLA-------------------------------------------------- 171 (256)
T ss_dssp -----TTBHHHHHHHHHHHHHHHHHHHHHG--------------------------------------------------
T ss_pred -----CCchhHHHHHHHHHHHHHHHHHHHH--------------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred CCCCCceeEEEeeCcccccCcccccCC---------CchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceec
Q psy13409 253 GANITNVNTYAVHPGVVDTELSRHFDS---------IIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYY 323 (330)
Q Consensus 253 ~~~~~~i~v~~v~pG~v~t~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~ 323 (330)
+ .||+||+|+||+|+|++...... .....+.........++.+|+|+|++++||+++ .++++||+.|
T Consensus 172 ~---~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l~s~-~~~~~tG~~i 247 (256)
T 1geg_A 172 P---LGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRITLGRLSEPEDVAACVSYLASP-DSDYMTGQSL 247 (256)
T ss_dssp G---GTEEEEEEEECSBSSHHHHHHHHHHHHHHTCCTTHHHHHHHTTCTTCSCBCHHHHHHHHHHHHSG-GGTTCCSCEE
T ss_pred H---cCeEEEEEEECCCccchhhhhhhhccccccCChHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCc-cccCCCCCEE
Confidence 5 79999999999999998654310 111111121111222388999999999999965 5679999998
Q ss_pred ccCC
Q psy13409 324 AKAD 327 (330)
Q Consensus 324 ~~~~ 327 (330)
...+
T Consensus 248 ~vdG 251 (256)
T 1geg_A 248 LIDG 251 (256)
T ss_dssp EESS
T ss_pred EeCC
Confidence 6543
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=298.72 Aligned_cols=242 Identities=17% Similarity=0.151 Sum_probs=203.0
Q ss_pred CCCCCCCEEEEEcCC--CchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSN--TGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRK 88 (330)
Q Consensus 11 ~~~~~gk~aLITGas--~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~ 88 (330)
+++++||++|||||+ +|||++++++|+++|++|++++|+....+...+...+. ...++.++.+|+++++++++
T Consensus 2 ~~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~v~~ 76 (266)
T 3oig_A 2 NFSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTL-----DRNDSIILPCDVTNDAEIET 76 (266)
T ss_dssp CSCCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTS-----SSCCCEEEECCCSSSHHHHH
T ss_pred ccccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhc-----CCCCceEEeCCCCCHHHHHH
Confidence 457899999999999 66999999999999999999999976555444433332 23479999999999999999
Q ss_pred HHHHHHhcCCCeeEEEEcCCCCC------CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccC
Q psy13409 89 CAQEILDNESAIHLLINNAGVMM------CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWG 162 (330)
Q Consensus 89 l~~~i~~~~g~iDvlInnAG~~~------~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~ 162 (330)
+++++.+.++++|++|||||... +..+.+.++++..+++|+.+++.+++.++|.|.+ +|+||++||.++..+
T Consensus 77 ~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~g~iv~isS~~~~~~ 154 (266)
T 3oig_A 77 CFASIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTE--GGSIVTLTYLGGELV 154 (266)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTT--CEEEEEEECGGGTSC
T ss_pred HHHHHHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCC--CceEEEEeccccccc
Confidence 99999999999999999999864 2257889999999999999999999999998864 589999999998777
Q ss_pred CCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcc
Q psy13409 163 DGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNH 242 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (330)
. +....|++||+|+++|+++++.|++
T Consensus 155 ~--------------~~~~~Y~asKaa~~~~~~~la~e~~---------------------------------------- 180 (266)
T 3oig_A 155 M--------------PNYNVMGVAKASLDASVKYLAADLG---------------------------------------- 180 (266)
T ss_dssp C--------------TTTHHHHHHHHHHHHHHHHHHHHHG----------------------------------------
T ss_pred C--------------CCcchhHHHHHHHHHHHHHHHHHHh----------------------------------------
Confidence 4 6788999999999999999999998
Q ss_pred cccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCcee
Q psy13409 243 YCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLY 322 (330)
Q Consensus 243 ~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~ 322 (330)
+ .||+||+|+||+|+|++.+...................++.+|+|+|++++||+++ .++++||+.
T Consensus 181 ----------~---~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~p~dva~~v~~l~s~-~~~~~tG~~ 246 (266)
T 3oig_A 181 ----------K---ENIRVNSISAGPIRTLSAKGISDFNSILKDIEERAPLRRTTTPEEVGDTAAFLFSD-MSRGITGEN 246 (266)
T ss_dssp ----------G---GTEEEEEEEECCCCSGGGTTCTTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSG-GGTTCCSCE
T ss_pred ----------h---cCcEEEEEecCcccccccccccchHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCC-chhcCcCCE
Confidence 5 79999999999999999877654333333333333333488999999999999966 567999999
Q ss_pred cccCC
Q psy13409 323 YAKAD 327 (330)
Q Consensus 323 ~~~~~ 327 (330)
|...+
T Consensus 247 i~vdG 251 (266)
T 3oig_A 247 LHVDS 251 (266)
T ss_dssp EEEST
T ss_pred EEECC
Confidence 87543
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=301.10 Aligned_cols=240 Identities=24% Similarity=0.298 Sum_probs=204.1
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
.++++|++|||||++|||++++++|+++|++|++++|+.+++++..+++++. +.++.++.+|++++++++++++
T Consensus 18 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dv~~~~~v~~~~~ 91 (277)
T 2rhc_B 18 ATQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA------GVEADGRTCDVRSVPEIEALVA 91 (277)
T ss_dssp CCTTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCceEEEECCCCCHHHHHHHHH
Confidence 3689999999999999999999999999999999999998888877777652 5678999999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHH--HhhhCCCeEEEEcCCCcccCCCCCc
Q psy13409 92 EILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPR--IIKSAPARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~--l~~~~~g~IV~iSS~~~~~~~~~~~ 167 (330)
++.+.++++|+||||||..... .+.+.++|++.+++|+.+++++++.++|. |.+++.|+||++||..+..+.
T Consensus 92 ~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS~~~~~~~---- 167 (277)
T 2rhc_B 92 AVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGV---- 167 (277)
T ss_dssp HHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECCGGGTSCC----
T ss_pred HHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECccccccCC----
Confidence 9999999999999999986532 57788999999999999999999999998 887777999999999887764
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
+....|++||+|++.|+++++.|++
T Consensus 168 ----------~~~~~Y~asK~a~~~~~~~la~e~~--------------------------------------------- 192 (277)
T 2rhc_B 168 ----------VHAAPYSASKHGVVGFTKALGLELA--------------------------------------------- 192 (277)
T ss_dssp ----------TTCHHHHHHHHHHHHHHHHHHHHHT---------------------------------------------
T ss_pred ----------CCCccHHHHHHHHHHHHHHHHHHHH---------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCC---C------chhhHHHH--HHhhhhhccChHHHHHHHHHhhcccccc
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDS---I------IPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCE 316 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~---~------~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~ 316 (330)
+ .||+||+|+||+|+|++...... . ....+... .++++ +.+|+|+|++++||+++ .++
T Consensus 193 -----~---~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r--~~~~~dvA~~v~~l~s~-~~~ 261 (277)
T 2rhc_B 193 -----R---TGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARVPIGR--YVQPSEVAEMVAYLIGP-GAA 261 (277)
T ss_dssp -----T---TEEEEEEEEECSBCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHSTTSS--CBCHHHHHHHHHHHHSG-GGT
T ss_pred -----H---hCcEEEEEecCcCcCchhhhhhhhcccccccchHHHHHHHHhcCCCCC--CcCHHHHHHHHHHHhCc-hhc
Confidence 6 79999999999999998654311 0 01111111 23333 88999999999999965 567
Q ss_pred ccCceecccCC
Q psy13409 317 RETGLYYAKAD 327 (330)
Q Consensus 317 ~~~G~~~~~~~ 327 (330)
++||+.|....
T Consensus 262 ~~tG~~~~vdG 272 (277)
T 2rhc_B 262 AVTAQALNVCG 272 (277)
T ss_dssp TCCSCEEEEST
T ss_pred CCCCcEEEECC
Confidence 99999987543
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-40 Score=301.10 Aligned_cols=232 Identities=20% Similarity=0.197 Sum_probs=186.8
Q ss_pred ccCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHH
Q psy13409 8 CTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVR 87 (330)
Q Consensus 8 ~~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~ 87 (330)
...+++++||++|||||++|||++++++|+++|++|++++|+.+++.+.. ... .+.++.+|++++++++
T Consensus 19 ~~~~m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~---~~~--------~~~~~~~Dv~~~~~v~ 87 (260)
T 3gem_A 19 FQGHMTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTEL---RQA--------GAVALYGDFSCETGIM 87 (260)
T ss_dssp --------CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHHH---HHH--------TCEEEECCTTSHHHHH
T ss_pred cccCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHH---Hhc--------CCeEEECCCCCHHHHH
Confidence 35567899999999999999999999999999999999999987654333 221 2678999999999999
Q ss_pred HHHHHHHhcCCCeeEEEEcCCCCCCC-CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCC
Q psy13409 88 KCAQEILDNESAIHLLINNAGVMMCP-RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSM 166 (330)
Q Consensus 88 ~l~~~i~~~~g~iDvlInnAG~~~~~-~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~ 166 (330)
++++++.+.++++|+||||||..... .+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||..+..+.
T Consensus 88 ~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~--- 164 (260)
T 3gem_A 88 AFIDLLKTQTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISDDVTRKGS--- 164 (260)
T ss_dssp HHHHHHHHHCSCCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGTCC---
T ss_pred HHHHHHHHhcCCCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCCC---
Confidence 99999999999999999999987543 56677899999999999999999999999998888999999999887774
Q ss_pred cccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccc
Q psy13409 167 HFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKN 246 (330)
Q Consensus 167 ~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (330)
++...|++||+|+++|++++|.|++
T Consensus 165 -----------~~~~~Y~asKaa~~~l~~~la~e~~-------------------------------------------- 189 (260)
T 3gem_A 165 -----------SKHIAYCATKAGLESLTLSFAARFA-------------------------------------------- 189 (260)
T ss_dssp -----------SSCHHHHHHHHHHHHHHHHHHHHHT--------------------------------------------
T ss_pred -----------CCcHhHHHHHHHHHHHHHHHHHHHC--------------------------------------------
Confidence 6788999999999999999999998
Q ss_pred cccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCceecc
Q psy13409 247 VLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYA 324 (330)
Q Consensus 247 ~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~ 324 (330)
++|+||+|+||+|+|++..... ..+... .++++ +.+|+|+|++++||+ .++++||+.|.
T Consensus 190 ----------~~Irvn~v~PG~v~t~~~~~~~----~~~~~~~~~p~~r--~~~~edva~~v~~L~---~~~~itG~~i~ 250 (260)
T 3gem_A 190 ----------PLVKVNGIAPALLMFQPKDDAA----YRANALAKSALGI--EPGAEVIYQSLRYLL---DSTYVTGTTLT 250 (260)
T ss_dssp ----------TTCEEEEEEECTTCC-------------------CCSCC--CCCTHHHHHHHHHHH---HCSSCCSCEEE
T ss_pred ----------CCCEEEEEeecccccCCCCCHH----HHHHHHhcCCCCC--CCCHHHHHHHHHHHh---hCCCCCCCEEE
Confidence 4699999999999999754221 111122 23444 889999999999998 35699999987
Q ss_pred cCC
Q psy13409 325 KAD 327 (330)
Q Consensus 325 ~~~ 327 (330)
..+
T Consensus 251 vdG 253 (260)
T 3gem_A 251 VNG 253 (260)
T ss_dssp EST
T ss_pred ECC
Confidence 544
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-40 Score=302.75 Aligned_cols=233 Identities=21% Similarity=0.233 Sum_probs=194.7
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
...+++||++|||||++|||++++++|+++|++|++++|+.+.. ...+..+.+|++++++++++
T Consensus 8 ~~~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~~~Dv~~~~~v~~~ 71 (269)
T 3vtz_A 8 HMEEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSD----------------VNVSDHFKIDVTNEEEVKEA 71 (269)
T ss_dssp --CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--C----------------TTSSEEEECCTTCHHHHHHH
T ss_pred cccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhc----------------cCceeEEEecCCCHHHHHHH
Confidence 44578999999999999999999999999999999999987542 22467889999999999999
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCc
Q psy13409 90 AQEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~ 167 (330)
++++.+.++++|+||||||+... ..+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||..+..+.
T Consensus 72 ~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~---- 147 (269)
T 3vtz_A 72 VEKTTKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHGSIINIASVQSYAAT---- 147 (269)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSBC----
T ss_pred HHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhccCC----
Confidence 99999999999999999998653 367889999999999999999999999999998888999999999887764
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
+....|++||+|+++|+++++.|++
T Consensus 148 ----------~~~~~Y~asKaa~~~l~~~la~e~~--------------------------------------------- 172 (269)
T 3vtz_A 148 ----------KNAAAYVTSKHALLGLTRSVAIDYA--------------------------------------------- 172 (269)
T ss_dssp ----------TTCHHHHHHHHHHHHHHHHHHHHHT---------------------------------------------
T ss_pred ----------CCChhHHHHHHHHHHHHHHHHHHhc---------------------------------------------
Confidence 6788999999999999999999997
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCC-----C----chhhHHHHHHhhhhhccChHHHHHHHHHhhcccccccc
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDS-----I----IPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERE 318 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~ 318 (330)
++|+||+|+||+|+|++...... . ....+.........++.+|+|+|++++||+++ .++++
T Consensus 173 ---------~~i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~-~~~~i 242 (269)
T 3vtz_A 173 ---------PKIRCNAVCPGTIMTPMVIKAAKMEVGEDENAVERKIEEWGRQHPMGRIGRPEEVAEVVAFLASD-RSSFI 242 (269)
T ss_dssp ---------TTEEEEEEEECSBCCHHHHHHHHHHHCCSTTHHHHHHHHHHHHSTTSSCBCHHHHHHHHHHHHSG-GGTTC
T ss_pred ---------CCCEEEEEEECCCcCcchhhhhhccccccchhhHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCC-ccCCC
Confidence 58999999999999998654311 0 11111122222223388999999999999976 56799
Q ss_pred CceecccCC
Q psy13409 319 TGLYYAKAD 327 (330)
Q Consensus 319 ~G~~~~~~~ 327 (330)
||+.|...+
T Consensus 243 tG~~i~vdG 251 (269)
T 3vtz_A 243 TGACLTVDG 251 (269)
T ss_dssp CSCEEEEST
T ss_pred cCcEEEECC
Confidence 999987644
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-40 Score=306.48 Aligned_cols=237 Identities=22% Similarity=0.260 Sum_probs=199.7
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHH-HHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAE-TAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~-~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.+++||++|||||++|||++++++|+++|++|++++|+.+... ...+.+.. .+.++.++.+|++|++++++++
T Consensus 43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~~Dv~d~~~v~~~~ 116 (291)
T 3ijr_A 43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEK------EGVKCVLLPGDLSDEQHCKDIV 116 (291)
T ss_dssp STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHT------TTCCEEEEESCTTSHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHh------cCCcEEEEECCCCCHHHHHHHH
Confidence 4689999999999999999999999999999999999876533 33333433 3678999999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCC---CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCc
Q psy13409 91 QEILDNESAIHLLINNAGVMMC---PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~---~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~ 167 (330)
+++.+.++++|+||||||.... ..+.+.++|++.+++|+.+++++++.++|.|.+ .|+||++||..+..+.
T Consensus 117 ~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~--~g~iv~isS~~~~~~~---- 190 (291)
T 3ijr_A 117 QETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQ--GDVIINTASIVAYEGN---- 190 (291)
T ss_dssp HHHHHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCT--TCEEEEECCTHHHHCC----
T ss_pred HHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhh--CCEEEEEechHhcCCC----
Confidence 9999999999999999998643 356789999999999999999999999998854 5899999999987774
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
+....|++||+|+++|++++|.|++
T Consensus 191 ----------~~~~~Y~asKaa~~~l~~~la~e~~--------------------------------------------- 215 (291)
T 3ijr_A 191 ----------ETLIDYSATKGAIVAFTRSLSQSLV--------------------------------------------- 215 (291)
T ss_dssp ----------TTCHHHHHHHHHHHHHHHHHHHHHG---------------------------------------------
T ss_pred ----------CCChhHHHHHHHHHHHHHHHHHHHh---------------------------------------------
Confidence 6788999999999999999999998
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCceeccc
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAK 325 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~ 325 (330)
+ .||+||+|+||+|+|++......... ..... .++++ +.+|+|+|++++||+++ .++++||+.|..
T Consensus 216 -----~---~gi~vn~v~PG~v~T~~~~~~~~~~~-~~~~~~~~p~~r--~~~p~dvA~~v~~L~s~-~~~~itG~~i~v 283 (291)
T 3ijr_A 216 -----Q---KGIRVNGVAPGPIWTPLIPSSFDEKK-VSQFGSNVPMQR--PGQPYELAPAYVYLASS-DSSYVTGQMIHV 283 (291)
T ss_dssp -----G---GTCEEEEEEECSBCSTHHHHHSCHHH-HHHTTTTSTTSS--CBCGGGTHHHHHHHHSG-GGTTCCSCEEEE
T ss_pred -----h---cCEEEEEEeeCCCcCCcccccCCHHH-HHHHHccCCCCC--CcCHHHHHHHHHHHhCC-ccCCCcCCEEEE
Confidence 5 79999999999999998754332111 11111 23444 88999999999999966 567999999876
Q ss_pred CC
Q psy13409 326 AD 327 (330)
Q Consensus 326 ~~ 327 (330)
.+
T Consensus 284 dG 285 (291)
T 3ijr_A 284 NG 285 (291)
T ss_dssp SS
T ss_pred CC
Confidence 54
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-40 Score=302.27 Aligned_cols=232 Identities=20% Similarity=0.211 Sum_probs=187.0
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.+++++|++|||||++|||++++++|+++|++|++++|+.+... ++ .+.++.++.+|+++++++++++
T Consensus 4 ~m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~---~~---------~~~~~~~~~~D~~~~~~v~~~~ 71 (257)
T 3tl3_A 4 SMEIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGEDVV---AD---------LGDRARFAAADVTDEAAVASAL 71 (257)
T ss_dssp ------CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCHHHH---HH---------TCTTEEEEECCTTCHHHHHHHH
T ss_pred cceecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchHHHH---Hh---------cCCceEEEECCCCCHHHHHHHH
Confidence 35689999999999999999999999999999999999754322 11 2567899999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCC------CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhh--------hCCCeEEEEcC
Q psy13409 91 QEILDNESAIHLLINNAGVMMCP------RQLTEDGYELQFATNHLGHYLFTLLLLPRIIK--------SAPARIINLSS 156 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~------~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~--------~~~g~IV~iSS 156 (330)
+.+.+ ++++|+||||||..... .+.+.++|++.+++|+.+++++++.++|.|.+ ++.|+||++||
T Consensus 72 ~~~~~-~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS 150 (257)
T 3tl3_A 72 DLAET-MGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTAS 150 (257)
T ss_dssp HHHHH-HSCEEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECC
T ss_pred HHHHH-hCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcc
Confidence 98877 89999999999986432 24789999999999999999999999999988 55789999999
Q ss_pred CCcccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccC
Q psy13409 157 LAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANL 236 (330)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (330)
..+..+. ++...|++||+|+++|++++|.|++
T Consensus 151 ~~~~~~~--------------~~~~~Y~asKaa~~~~~~~la~e~~---------------------------------- 182 (257)
T 3tl3_A 151 VAAFDGQ--------------IGQAAYSASKGGVVGMTLPIARDLA---------------------------------- 182 (257)
T ss_dssp CC--CCH--------------HHHHHHHHHHHHHHHHHHHHHHHHG----------------------------------
T ss_pred hhhcCCC--------------CCCccHHHHHHHHHHHHHHHHHHhc----------------------------------
Confidence 9987774 6788999999999999999999998
Q ss_pred CCCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhh-hhccChHHHHHHHHHhhccccc
Q psy13409 237 QTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGG-LFIKSPLQGAQTTLYCALDKKC 315 (330)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~a~~~~~l~~~~~~ 315 (330)
+ .||+||+|+||+|+|++.+..... ........... .++.+|+|+|++++||+++
T Consensus 183 ----------------~---~gI~vn~v~PG~v~T~~~~~~~~~--~~~~~~~~~~~~~r~~~p~dva~~v~~l~s~--- 238 (257)
T 3tl3_A 183 ----------------S---HRIRVMTIAPGLFDTPLLASLPEE--ARASLGKQVPHPSRLGNPDEYGALAVHIIEN--- 238 (257)
T ss_dssp ----------------G---GTEEEEEEEECSBCCTTC---CHH--HHHHHHHTSSSSCSCBCHHHHHHHHHHHHHC---
T ss_pred ----------------c---cCcEEEEEEecCccChhhhhccHH--HHHHHHhcCCCCCCccCHHHHHHHHHHHhcC---
Confidence 5 799999999999999998764321 12222222222 3389999999999999965
Q ss_pred cccCceecccCC
Q psy13409 316 ERETGLYYAKAD 327 (330)
Q Consensus 316 ~~~~G~~~~~~~ 327 (330)
+++||+.|...+
T Consensus 239 ~~itG~~i~vdG 250 (257)
T 3tl3_A 239 PMLNGEVIRLDG 250 (257)
T ss_dssp TTCCSCEEEEST
T ss_pred CCCCCCEEEECC
Confidence 599999987654
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=298.57 Aligned_cols=242 Identities=19% Similarity=0.186 Sum_probs=193.6
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
+++.+|++|||||++|||++++++|+++|++|++++|+.....+...+.... .+.++.++.+|++++++++++++
T Consensus 3 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~v~~~~~ 77 (264)
T 3i4f_A 3 LGRFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKD-----VEERLQFVQADVTKKEDLHKIVE 77 (264)
T ss_dssp ---CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTGG-----GGGGEEEEECCTTSHHHHHHHHH
T ss_pred cccccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHh-----cCCceEEEEecCCCHHHHHHHHH
Confidence 4567899999999999999999999999999999988765443333332222 25689999999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCC--C--CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcc-cCCCCC
Q psy13409 92 EILDNESAIHLLINNAGVM--M--CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHT-WGDGSM 166 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~--~--~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~-~~~~~~ 166 (330)
++.+.++++|++|||||.. . +..+.+.++|++.+++|+.+++.+++.++|.|.+++.++||++||.... ..
T Consensus 78 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~---- 153 (264)
T 3i4f_A 78 EAMSHFGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQNFGRIINYGFQGADSAP---- 153 (264)
T ss_dssp HHHHHHSCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTTGGGCC----
T ss_pred HHHHHhCCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEeechhcccC----
Confidence 9999999999999999943 2 2357788999999999999999999999999999888999999997432 21
Q ss_pred cccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccc
Q psy13409 167 HFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKN 246 (330)
Q Consensus 167 ~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (330)
+++....|++||+|+++|+++++.|++
T Consensus 154 ---------~~~~~~~Y~asKaa~~~~~~~la~e~~-------------------------------------------- 180 (264)
T 3i4f_A 154 ---------GWIYRSAFAAAKVGLVSLTKTVAYEEA-------------------------------------------- 180 (264)
T ss_dssp ---------CCTTCHHHHHHHHHHHHHHHHHHHHHG--------------------------------------------
T ss_pred ---------CCCCCchhHHHHHHHHHHHHHHHHHhh--------------------------------------------
Confidence 136778999999999999999999998
Q ss_pred cccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 247 VLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 247 ~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+ .||+||+|+||+|+|++.+..............++++ +.+|+|+|++++||+++ .++++||+.|...
T Consensus 181 ------~---~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~p~~r--~~~~~dva~~v~~l~s~-~~~~itG~~i~vd 248 (264)
T 3i4f_A 181 ------E---YGITANMVCPGDIIGEMKEATIQEARQLKEHNTPIGR--SGTGEDIARTISFLCED-DSDMITGTIIEVT 248 (264)
T ss_dssp ------G---GTEEEEEEEECCCCGGGGSCCHHHHHHC--------C--CCCHHHHHHHHHHHHSG-GGTTCCSCEEEES
T ss_pred ------h---cCcEEEEEccCCccCccchhccHHHHHHHhhcCCCCC--CcCHHHHHHHHHHHcCc-ccCCCCCcEEEEc
Confidence 5 7999999999999999877653221111111234555 88999999999999966 5679999998765
Q ss_pred C
Q psy13409 327 D 327 (330)
Q Consensus 327 ~ 327 (330)
+
T Consensus 249 G 249 (264)
T 3i4f_A 249 G 249 (264)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-39 Score=296.79 Aligned_cols=240 Identities=20% Similarity=0.166 Sum_probs=200.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHH---CCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAK---RGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~---~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
+|++|++|||||++|||++++++|++ +|++|++++|+.++++++.+++.... .+.++.++.+|++++++++++
T Consensus 3 ~l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~~Dv~~~~~v~~~ 78 (259)
T 1oaa_A 3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQ----PDLKVVLAAADLGTEAGVQRL 78 (259)
T ss_dssp CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHC----TTSEEEEEECCTTSHHHHHHH
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhC----CCCeEEEEecCCCCHHHHHHH
Confidence 58899999999999999999999999 89999999999998888888876542 256899999999999999999
Q ss_pred HHHHHh--cCCCee--EEEEcCCCCCC----CCC-CChhhHHHhHHHHHHHHHHHHHHHHHHHhhh--CCCeEEEEcCCC
Q psy13409 90 AQEILD--NESAIH--LLINNAGVMMC----PRQ-LTEDGYELQFATNHLGHYLFTLLLLPRIIKS--APARIINLSSLA 158 (330)
Q Consensus 90 ~~~i~~--~~g~iD--vlInnAG~~~~----~~~-~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~--~~g~IV~iSS~~ 158 (330)
++.+.+ .++++| +||||||.... ..+ .+.++|++++++|+.+++++++.++|.|.++ +.|+||++||.+
T Consensus 79 ~~~~~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~ 158 (259)
T 1oaa_A 79 LSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLC 158 (259)
T ss_dssp HHHHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGG
T ss_pred HHHHHhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCch
Confidence 999988 678888 99999998642 234 6889999999999999999999999999876 568999999998
Q ss_pred cccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCC
Q psy13409 159 HTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQT 238 (330)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (330)
+..+. ++...|++||+|+++|+++++.|++
T Consensus 159 ~~~~~--------------~~~~~Y~asKaa~~~~~~~la~e~~------------------------------------ 188 (259)
T 1oaa_A 159 ALQPY--------------KGWGLYCAGKAARDMLYQVLAAEEP------------------------------------ 188 (259)
T ss_dssp GTSCC--------------TTCHHHHHHHHHHHHHHHHHHHHCT------------------------------------
T ss_pred hcCCC--------------CCccHHHHHHHHHHHHHHHHHhhCC------------------------------------
Confidence 87764 6788999999999999999999985
Q ss_pred CCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCC---CchhhHHHHHHhhhhhccChHHHHHHHHHhhccccc
Q psy13409 239 PTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDS---IIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKC 315 (330)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~ 315 (330)
+ |+||+|+||+|+|++...... .....+.........++.+|+|+|+.++||+++ .
T Consensus 189 ------------------~-i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~dvA~~v~~l~~~--~ 247 (259)
T 1oaa_A 189 ------------------S-VRVLSYAPGPLDNDMQQLARETSKDPELRSKLQKLKSDGALVDCGTSAQKLLGLLQK--D 247 (259)
T ss_dssp ------------------T-EEEEEEECCSBSSHHHHHHHHHCSCHHHHHHHHHHHHTTCSBCHHHHHHHHHHHHHH--C
T ss_pred ------------------C-ceEEEecCCCcCcchHHHHhhccCChhHHHHHHHhhhcCCcCCHHHHHHHHHHHHhh--c
Confidence 4 999999999999998754321 111112222222223389999999999999964 4
Q ss_pred cccCceecccCC
Q psy13409 316 ERETGLYYAKAD 327 (330)
Q Consensus 316 ~~~~G~~~~~~~ 327 (330)
+++||++|...+
T Consensus 248 ~~itG~~i~vdg 259 (259)
T 1oaa_A 248 TFQSGAHVDFYD 259 (259)
T ss_dssp CSCTTEEEETTC
T ss_pred cccCCcEEeccC
Confidence 799999987653
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-40 Score=301.13 Aligned_cols=239 Identities=20% Similarity=0.270 Sum_probs=200.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEe-cChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMAC-RSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~-R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
.+++|++|||||++|||++++++|+++|++|++++ |+.+.+++..+.+.. .+.++.++.+|++|.++++++++
T Consensus 22 ~~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Dl~~~~~v~~~~~ 95 (269)
T 3gk3_A 22 MQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERD------AGRDFKAYAVDVADFESCERCAE 95 (269)
T ss_dssp --CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHT------TTCCCEEEECCTTCHHHHHHHHH
T ss_pred hhcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHh------cCCceEEEEecCCCHHHHHHHHH
Confidence 37899999999999999999999999999999998 566666666555543 36789999999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 92 EILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
++.+.++++|+||||||..... .+.+.++|+..+++|+.+++.+++.++|.|.+++.|+||++||..+..+.
T Consensus 96 ~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~------ 169 (269)
T 3gk3_A 96 KVLADFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFGRIVNIGSVNGSRGA------ 169 (269)
T ss_dssp HHHHHHSCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC------
T ss_pred HHHHHcCCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEeCChhhccCC------
Confidence 9999999999999999987543 57789999999999999999999999999998888999999999887774
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
++...|++||+|+++|+++++.|++
T Consensus 170 --------~~~~~Y~asKaa~~~~~~~la~e~~----------------------------------------------- 194 (269)
T 3gk3_A 170 --------FGQANYASAKAGIHGFTKTLALETA----------------------------------------------- 194 (269)
T ss_dssp --------TTBHHHHHHHHHHHHHHHHHHHHHG-----------------------------------------------
T ss_pred --------CCcchHHHHHHHHHHHHHHHHHHhh-----------------------------------------------
Confidence 7789999999999999999999998
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCchhhH-HHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTA-WLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
. .||+||+|+||+|+|++.+.......... ....+.++ +.+|+|+|++++||+++ .++++||+.|...+
T Consensus 195 ---~---~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~--~~~p~dvA~~v~~L~s~-~~~~itG~~i~vdg 264 (269)
T 3gk3_A 195 ---K---RGITVNTVSPGYLATAMVEAVPQDVLEAKILPQIPVGR--LGRPDEVAALIAFLCSD-DAGFVTGADLAING 264 (269)
T ss_dssp ---G---GTEEEEEEEECSBCCTTTTC-------CCSGGGCTTSS--CBCHHHHHHHHHHHTST-TCTTCCSCEEEEST
T ss_pred ---h---cCCEEEEEecCcccchhhhhhchhHHHHHhhhcCCcCC--ccCHHHHHHHHHHHhCC-CcCCeeCcEEEECC
Confidence 5 79999999999999999876543211100 01123344 78999999999999966 56799999987654
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-39 Score=298.58 Aligned_cols=235 Identities=23% Similarity=0.272 Sum_probs=199.0
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
+|+||++|||||++|||++++++|+++|++|++++|+.+++++..+++ +.++.++.+|+++++++++++++
T Consensus 2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~D~~~~~~~~~~~~~ 72 (254)
T 1hdc_A 2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL---------GDAARYQHLDVTIEEDWQRVVAY 72 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT---------GGGEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---------CCceeEEEecCCCHHHHHHHHHH
Confidence 478999999999999999999999999999999999988776654433 34688999999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 93 ILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
+.+.++++|+||||||.... ..+.+.++|++.+++|+.+++.+++.++|.|.+++.|+||++||..+..+.
T Consensus 73 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------- 145 (254)
T 1hdc_A 73 AREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGL------- 145 (254)
T ss_dssp HHHHHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC-------
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhccCC-------
Confidence 99999999999999998653 257788999999999999999999999999998878999999999887664
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
+....|++||++++.|+++++.|++
T Consensus 146 -------~~~~~Y~asK~a~~~~~~~la~e~~------------------------------------------------ 170 (254)
T 1hdc_A 146 -------ALTSSYGASKWGVRGLSKLAAVELG------------------------------------------------ 170 (254)
T ss_dssp -------TTCHHHHHHHHHHHHHHHHHHHHHG------------------------------------------------
T ss_pred -------CCchhHHHHHHHHHHHHHHHHHHhh------------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred CCCCCCCceeEEEeeCcccccCcccccCCCchhhHH-HHHHhhhhhcc-ChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 251 PPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAW-LYQRVGGLFIK-SPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 251 ~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
+ +||+||+|+||+|+|++.+...... .... ...++++ +. +|+|+|+.++||+++ .++++||++|...+
T Consensus 171 --~---~gi~v~~v~Pg~v~t~~~~~~~~~~-~~~~~~~~p~~~--~~~~~~dvA~~v~~l~s~-~~~~~tG~~~~vdg 240 (254)
T 1hdc_A 171 --T---DRIRVNSVHPGMTYTPMTAETGIRQ-GEGNYPNTPMGR--VGNEPGEIAGAVVKLLSD-TSSYVTGAELAVDG 240 (254)
T ss_dssp --G---GTEEEEEEEECSBCCHHHHHHTCCC-STTSCTTSTTSS--CB-CHHHHHHHHHHHHSG-GGTTCCSCEEEEST
T ss_pred --h---cCeEEEEEecccCcCccccccchhH-HHHHHhcCCCCC--CCCCHHHHHHHHHHHhCc-hhcCCCCCEEEECC
Confidence 5 7999999999999999865432110 0000 0123344 77 999999999999965 56799999987543
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-39 Score=299.11 Aligned_cols=243 Identities=12% Similarity=0.063 Sum_probs=202.3
Q ss_pred ccCCCCCCCCEEEEEcCC--CchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHH
Q psy13409 8 CTADTRLDGKTAIVTGSN--TGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKS 85 (330)
Q Consensus 8 ~~~~~~~~gk~aLITGas--~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~s 85 (330)
...|.+++||++|||||+ +|||++++++|+++|++|++++|+. .++..+++.+. ..++.++.||++++++
T Consensus 18 ~~~M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~l~~~------~~~~~~~~~Dl~~~~~ 89 (280)
T 3nrc_A 18 GSHMGFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ--FKDRVEKLCAE------FNPAAVLPCDVISDQE 89 (280)
T ss_dssp ----CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT--CHHHHHHHHGG------GCCSEEEECCTTCHHH
T ss_pred CCcccccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch--HHHHHHHHHHh------cCCceEEEeecCCHHH
Confidence 344557899999999988 7899999999999999999999997 33444555443 2358899999999999
Q ss_pred HHHHHHHHHhcCCCeeEEEEcCCCCCCC------CC-CChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCC
Q psy13409 86 VRKCAQEILDNESAIHLLINNAGVMMCP------RQ-LTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLA 158 (330)
Q Consensus 86 i~~l~~~i~~~~g~iDvlInnAG~~~~~------~~-~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~ 158 (330)
++++++++.+.++++|+||||||+.... .+ .+.++|++.+++|+.+++.+++.+++.|.++ .|+||++||.+
T Consensus 90 v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~g~iv~isS~~ 168 (280)
T 3nrc_A 90 IKDLFVELGKVWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNR-NASMVALTYIG 168 (280)
T ss_dssp HHHHHHHHHHHCSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT-TCEEEEEECGG
T ss_pred HHHHHHHHHHHcCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCeEEEEeccc
Confidence 9999999999999999999999987531 23 7899999999999999999999999999866 69999999998
Q ss_pred cccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCC
Q psy13409 159 HTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQT 238 (330)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (330)
+..+. +....|++||+|+++|+++++.|++
T Consensus 169 ~~~~~--------------~~~~~Y~asKaal~~~~~~la~e~~------------------------------------ 198 (280)
T 3nrc_A 169 AEKAM--------------PSYNTMGVAKASLEATVRYTALALG------------------------------------ 198 (280)
T ss_dssp GTSCC--------------TTTHHHHHHHHHHHHHHHHHHHHHG------------------------------------
T ss_pred cccCC--------------CCchhhHHHHHHHHHHHHHHHHHHH------------------------------------
Confidence 87774 7788999999999999999999998
Q ss_pred CCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhcccccccc
Q psy13409 239 PTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERE 318 (330)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~ 318 (330)
+ .||+||+|+||+|+|++.+.........+.........++.+|+|+|++++||+++ .++++
T Consensus 199 --------------~---~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~~~~~pedvA~~v~~l~s~-~~~~~ 260 (280)
T 3nrc_A 199 --------------E---DGIKVNAVSAGPIKTLAASGISNFKKMLDYNAMVSPLKKNVDIMEVGNTVAFLCSD-MATGI 260 (280)
T ss_dssp --------------G---GTCEEEEEEECCCCCSGGGGCTTHHHHHHHHHHHSTTCSCCCHHHHHHHHHHTTSG-GGTTC
T ss_pred --------------H---cCcEEEEEeeccccchhhhcCcchHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCc-ccCCc
Confidence 5 79999999999999999887654333333333333333389999999999999865 56799
Q ss_pred CceecccCC
Q psy13409 319 TGLYYAKAD 327 (330)
Q Consensus 319 ~G~~~~~~~ 327 (330)
||+.|...+
T Consensus 261 tG~~i~vdg 269 (280)
T 3nrc_A 261 TGEVVHVDA 269 (280)
T ss_dssp CSCEEEEST
T ss_pred CCcEEEECC
Confidence 999987654
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-40 Score=300.52 Aligned_cols=244 Identities=17% Similarity=0.179 Sum_probs=205.3
Q ss_pred CCCCCCCCEEEEEcCC--CchHHHHHHHHHHCCCEEEEEecChhHH-HHHHHHHHHhhcccCCCCeEEEEEccCCCHHHH
Q psy13409 10 ADTRLDGKTAIVTGSN--TGIGKCTANELAKRGARVIMACRSLEKA-ETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSV 86 (330)
Q Consensus 10 ~~~~~~gk~aLITGas--~gIG~aia~~L~~~G~~Vil~~R~~~~l-~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si 86 (330)
.+++++||++|||||+ +|||++++++|+++|++|++++|+.... ++..+++.+.. +.++.++.+|+++++++
T Consensus 14 ~~~~l~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~Dl~~~~~v 88 (267)
T 3gdg_A 14 DQLSLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTY-----GIKAKAYKCQVDSYESC 88 (267)
T ss_dssp HHHCCTTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHHHHHHHH-----CCCEECCBCCTTCHHHH
T ss_pred cccCcCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHHHHHHhc-----CCceeEEecCCCCHHHH
Confidence 3457999999999999 9999999999999999999999886554 66666666542 67899999999999999
Q ss_pred HHHHHHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCC
Q psy13409 87 RKCAQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDG 164 (330)
Q Consensus 87 ~~l~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~ 164 (330)
+++++++.+.++++|+||||||+.... .+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||..+..+.
T Consensus 89 ~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~- 167 (267)
T 3gdg_A 89 EKLVKDVVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTGSLVITASMSGHIAN- 167 (267)
T ss_dssp HHHHHHHHHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCC-
T ss_pred HHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcCCceEEEEccccccccC-
Confidence 999999999999999999999987543 67789999999999999999999999999999888999999999887663
Q ss_pred CCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccc
Q psy13409 165 SMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYC 244 (330)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
..++...|++||+|+++|+++++.|++
T Consensus 168 -----------~~~~~~~Y~~sK~a~~~~~~~la~e~~------------------------------------------ 194 (267)
T 3gdg_A 168 -----------FPQEQTSYNVAKAGCIHMARSLANEWR------------------------------------------ 194 (267)
T ss_dssp -----------SSSCCHHHHHHHHHHHHHHHHHHHHTT------------------------------------------
T ss_pred -----------CCCCCCcchHHHHHHHHHHHHHHHHhc------------------------------------------
Confidence 114678999999999999999999998
Q ss_pred cccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecc
Q psy13409 245 KNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYA 324 (330)
Q Consensus 245 ~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~ 324 (330)
+ . |+||+|+||+|+|++.+..... ..+.........++.+|+|+|++++||+++ .++++||+.|.
T Consensus 195 --------~---~-i~v~~v~PG~v~t~~~~~~~~~--~~~~~~~~~~~~r~~~~~dva~~~~~l~s~-~~~~itG~~i~ 259 (267)
T 3gdg_A 195 --------D---F-ARVNSISPGYIDTGLSDFVPKE--TQQLWHSMIPMGRDGLAKELKGAYVYFASD-ASTYTTGADLL 259 (267)
T ss_dssp --------T---T-CEEEEEEECCEECSCGGGSCHH--HHHHHHTTSTTSSCEETHHHHHHHHHHHST-TCTTCCSCEEE
T ss_pred --------c---C-cEEEEEECCccccchhhhCCHH--HHHHHHhcCCCCCCcCHHHHHhHhheeecC-ccccccCCEEE
Confidence 4 4 9999999999999998765321 122222222223388999999999999965 56899999987
Q ss_pred cCC
Q psy13409 325 KAD 327 (330)
Q Consensus 325 ~~~ 327 (330)
..+
T Consensus 260 vdg 262 (267)
T 3gdg_A 260 IDG 262 (267)
T ss_dssp EST
T ss_pred ECC
Confidence 543
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-40 Score=303.02 Aligned_cols=232 Identities=22% Similarity=0.201 Sum_probs=194.2
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
+.+++||++|||||++|||++++++|+++|++|++++|+.+.+. ....+.+|+++.+++++++
T Consensus 23 m~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~-----------------~~~~~~~Dv~~~~~~~~~~ 85 (266)
T 3uxy_A 23 MQGFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIA-----------------ADLHLPGDLREAAYADGLP 85 (266)
T ss_dssp ---CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSC-----------------CSEECCCCTTSHHHHHHHH
T ss_pred hhCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-----------------hhhccCcCCCCHHHHHHHH
Confidence 45789999999999999999999999999999999999865321 1244689999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 91 QEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
+++.+.++++|+||||||..... .+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||..+..+.
T Consensus 86 ~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~----- 160 (266)
T 3uxy_A 86 GAVAAGLGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAGGGAIVNVASCWGLRPG----- 160 (266)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTBCC-----
T ss_pred HHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCCCC-----
Confidence 99999999999999999987643 57889999999999999999999999999999888999999999987774
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
++..+|++||+|+++|+++++.|++
T Consensus 161 ---------~~~~~Y~asKaa~~~l~~~la~e~~---------------------------------------------- 185 (266)
T 3uxy_A 161 ---------PGHALYCLTKAALASLTQCMGMDHA---------------------------------------------- 185 (266)
T ss_dssp ---------TTBHHHHHHHHHHHHHHHHHHHHHG----------------------------------------------
T ss_pred ---------CCChHHHHHHHHHHHHHHHHHHHhh----------------------------------------------
Confidence 7888999999999999999999998
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCc-----hhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceec
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSII-----PGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYY 323 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~ 323 (330)
+ .||+||+|+||+|+|++.+...... ...+.........++.+|+|+|++++||+++ .++++||+.|
T Consensus 186 ----~---~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~-~~~~itG~~i 257 (266)
T 3uxy_A 186 ----P---QGIRINAVCPNEVNTPMLRTGFAKRGFDPDRAVAELGRTVPLGRIAEPEDIADVVLFLASD-AARYLCGSLV 257 (266)
T ss_dssp ----G---GTEEEEEEEESSBCCHHHHHHHHHTTCCHHHHHHHHHTTSTTSSCBCHHHHHHHHHHHHSG-GGTTCCSCEE
T ss_pred ----h---cCcEEEEEeeCCCcchHhhhhhhcccccchHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCc-hhcCCcCCEE
Confidence 5 7999999999999999865432111 1112222222223388999999999999966 5679999998
Q ss_pred ccCC
Q psy13409 324 AKAD 327 (330)
Q Consensus 324 ~~~~ 327 (330)
...+
T Consensus 258 ~vdG 261 (266)
T 3uxy_A 258 EVNG 261 (266)
T ss_dssp EEST
T ss_pred EECc
Confidence 7654
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-39 Score=298.92 Aligned_cols=240 Identities=21% Similarity=0.225 Sum_probs=195.8
Q ss_pred cCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh-hHHHHHHHHHHHhhcccCCCCeEEEEEccCCC----H
Q psy13409 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL-EKAETAADDIRTSLKDVKDAGEVVIRQLDLSS----L 83 (330)
Q Consensus 9 ~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~-~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~----~ 83 (330)
....+++||++|||||++|||++++++|+++|++|++++|+. ++++++.+++... .+.++.++.+|+++ +
T Consensus 16 ~~~~~l~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~-----~~~~~~~~~~Dv~~~~~~~ 90 (288)
T 2x9g_A 16 PRGSHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKE-----RSNTAVVCQADLTNSNVLP 90 (288)
T ss_dssp ------CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHH-----STTCEEEEECCCSCSTTHH
T ss_pred CCCcCCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhh-----cCCceEEEEeecCCccCCH
Confidence 344568999999999999999999999999999999999998 7888877777532 35678999999999 9
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEcCCCCCCC-------CC-----CChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC----
Q psy13409 84 KSVRKCAQEILDNESAIHLLINNAGVMMCP-------RQ-----LTEDGYELQFATNHLGHYLFTLLLLPRIIKSA---- 147 (330)
Q Consensus 84 ~si~~l~~~i~~~~g~iDvlInnAG~~~~~-------~~-----~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~---- 147 (330)
++++++++++.+.++++|+||||||+.... .+ .+.++|++.+++|+.+++.+++.++|.|.+++
T Consensus 91 ~~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~ 170 (288)
T 2x9g_A 91 ASCEEIINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCT 170 (288)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCC
Confidence 999999999999999999999999986432 34 67788999999999999999999999998766
Q ss_pred --CCeEEEEcCCCcccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccc
Q psy13409 148 --PARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFS 225 (330)
Q Consensus 148 --~g~IV~iSS~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (330)
.|+||++||..+..+. +....|++||+|+++|+++++.|++
T Consensus 171 ~~~g~iv~isS~~~~~~~--------------~~~~~Y~asKaa~~~l~~~la~e~~----------------------- 213 (288)
T 2x9g_A 171 SSNLSIVNLCDAMVDQPC--------------MAFSLYNMGKHALVGLTQSAALELA----------------------- 213 (288)
T ss_dssp CCCEEEEEECCTTTTSCC--------------TTCHHHHHHHHHHHHHHHHHHHHHG-----------------------
T ss_pred CCCeEEEEEecccccCCC--------------CCCchHHHHHHHHHHHHHHHHHHhh-----------------------
Confidence 6899999999887664 6788999999999999999999998
Q ss_pred hhhhhhhcccCCCCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhc-cChHHH
Q psy13409 226 NLTILLCDANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFI-KSPLQG 302 (330)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~e~ 302 (330)
+ .||+||+|+||+|+|++ + .. ........ .++++ + .+|+|+
T Consensus 214 ---------------------------~---~gI~vn~v~PG~v~t~~-~-~~--~~~~~~~~~~~p~~r--~~~~pedv 257 (288)
T 2x9g_A 214 ---------------------------P---YGIRVNGVAPGVSLLPV-A-MG--EEEKDKWRRKVPLGR--REASAEQI 257 (288)
T ss_dssp ---------------------------G---GTEEEEEEEESSCSCCT-T-SC--HHHHHHHHHTCTTTS--SCCCHHHH
T ss_pred ---------------------------c---cCeEEEEEEeccccCcc-c-cC--hHHHHHHHhhCCCCC--CCCCHHHH
Confidence 5 79999999999999998 4 21 11112221 23333 6 899999
Q ss_pred HHHHHHhhccccccccCceecccCC
Q psy13409 303 AQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 303 a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
|++++||+++ .++++||++|...+
T Consensus 258 A~~v~~l~s~-~~~~itG~~i~vdG 281 (288)
T 2x9g_A 258 ADAVIFLVSG-SAQYITGSIIKVDG 281 (288)
T ss_dssp HHHHHHHHSG-GGTTCCSCEEEEST
T ss_pred HHHHHHHhCc-cccCccCCEEEECc
Confidence 9999999965 56899999987543
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-39 Score=307.81 Aligned_cols=230 Identities=21% Similarity=0.272 Sum_probs=199.7
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhH-------HHHHHHHHHHhhcccCCCCeEEEEEccCCC
Q psy13409 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEK-------AETAADDIRTSLKDVKDAGEVVIRQLDLSS 82 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~-------l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~ 82 (330)
.+.+|+||++|||||++|||++++++|+++|++|++++|+.++ +.+..+++.. .+.++.++.+|++|
T Consensus 39 ~~~~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~------~g~~~~~~~~Dv~d 112 (346)
T 3kvo_A 39 NTGRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEA------VGGKALPCIVDVRD 112 (346)
T ss_dssp CCSTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHH------TTCEEEEEECCTTC
T ss_pred cCCCCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHh------cCCeEEEEEccCCC
Confidence 3457999999999999999999999999999999999999764 5566666655 36789999999999
Q ss_pred HHHHHHHHHHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcc
Q psy13409 83 LKSVRKCAQEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHT 160 (330)
Q Consensus 83 ~~si~~l~~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~ 160 (330)
+++++++++++.+.++++|+||||||+... ..+.+.++|++++++|+.+++++++.++|.|++++.|+||++||..+.
T Consensus 113 ~~~v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~~ 192 (346)
T 3kvo_A 113 EQQISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNL 192 (346)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCCC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHHc
Confidence 999999999999999999999999998753 367889999999999999999999999999998888999999998876
Q ss_pred cCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCC
Q psy13409 161 WGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPT 240 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (330)
.+. ..++...|++||+|+++|++++|.|++
T Consensus 193 ~~~------------~~~~~~~Y~aSKaal~~l~~~la~e~~-------------------------------------- 222 (346)
T 3kvo_A 193 NPV------------WFKQHCAYTIAKYGMSMYVLGMAEEFK-------------------------------------- 222 (346)
T ss_dssp CGG------------GTSSSHHHHHHHHHHHHHHHHHHHHTT--------------------------------------
T ss_pred CCC------------CCCCchHHHHHHHHHHHHHHHHHHHhc--------------------------------------
Confidence 551 126788999999999999999999997
Q ss_pred cccccccccCCCCCCCCceeEEEeeCcc-cccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccC
Q psy13409 241 NHYCKNVLFHPPGANITNVNTYAVHPGV-VDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERET 319 (330)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~i~v~~v~pG~-v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~ 319 (330)
.||+||+|+||+ |+|++.+...... +.++ +.+|+|+|++++||+++ ++++|
T Consensus 223 ----------------~gIrvn~v~PG~~i~T~~~~~~~~~~--------~~~r--~~~pedvA~~v~~L~s~--~~~it 274 (346)
T 3kvo_A 223 ----------------GEIAVNALWPKTAIHTAAMDMLGGPG--------IESQ--CRKVDIIADAAYSIFQK--PKSFT 274 (346)
T ss_dssp ----------------TTCEEEEEECSBCBCCHHHHHHCC----------CGGG--CBCTHHHHHHHHHHHTS--CTTCC
T ss_pred ----------------CCcEEEEEeCCCccccHHHHhhcccc--------cccc--CCCHHHHHHHHHHHHhc--CCCCC
Confidence 689999999995 9999876443221 2344 78999999999999966 67999
Q ss_pred ceec
Q psy13409 320 GLYY 323 (330)
Q Consensus 320 G~~~ 323 (330)
|+++
T Consensus 275 G~~i 278 (346)
T 3kvo_A 275 GNFV 278 (346)
T ss_dssp SCEE
T ss_pred ceEE
Confidence 9988
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=299.91 Aligned_cols=240 Identities=24% Similarity=0.231 Sum_probs=201.1
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCC---eEEEEEccCCCHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG---EVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~---~v~~i~~Dls~~~si~~l 89 (330)
+++||++|||||++|||++++++|+++|++|++++|+.+++++..+++... +. ++.++.+|++++++++++
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~~~~Dv~~~~~v~~~ 76 (280)
T 1xkq_A 3 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKS------GVSEKQVNSVVADVTTEDGQDQI 76 (280)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT------TCCGGGEEEEECCTTSHHHHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHc------CCCCcceEEEEecCCCHHHHHHH
Confidence 589999999999999999999999999999999999998888877777542 33 789999999999999999
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCC------CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCC
Q psy13409 90 AQEILDNESAIHLLINNAGVMMC------PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGD 163 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~------~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~ 163 (330)
++++.+.++++|+||||||.... ..+.+.++|++.+++|+.+++++++.++|.|.+++ |+||++||..+..+.
T Consensus 77 ~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~ 155 (280)
T 1xkq_A 77 INSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK-GEIVNVSSIVAGPQA 155 (280)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGSSSC
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC-CcEEEecCccccCCC
Confidence 99999999999999999998643 34678899999999999999999999999998776 999999998876552
Q ss_pred CCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccc
Q psy13409 164 GSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHY 243 (330)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (330)
.+....|++||+|++.|+++++.|++
T Consensus 156 -------------~~~~~~Y~asK~a~~~~~~~la~e~~----------------------------------------- 181 (280)
T 1xkq_A 156 -------------QPDFLYYAIAKAALDQYTRSTAIDLA----------------------------------------- 181 (280)
T ss_dssp -------------CCSSHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------
T ss_pred -------------CCcccHHHHHHHHHHHHHHHHHHHhc-----------------------------------------
Confidence 15678999999999999999999998
Q ss_pred ccccccCCCCCCCCceeEEEeeCcccccCcccccCCCch----hhHHHH-----HHhhhhhccChHHHHHHHHHhhcccc
Q psy13409 244 CKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIP----GTAWLY-----QRVGGLFIKSPLQGAQTTLYCALDKK 314 (330)
Q Consensus 244 ~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~----~~~~~~-----~~~~~~~~~~~~e~a~~~~~l~~~~~ 314 (330)
+ .||+||+|+||+|+|++......... ..+... .+++ ++.+|+|+|++++||++++.
T Consensus 182 ---------~---~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~pedvA~~v~~l~s~~~ 247 (280)
T 1xkq_A 182 ---------K---FGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKECIPIG--AAGKPEHIANIILFLADRNL 247 (280)
T ss_dssp ---------T---TTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTCTTS--SCBCHHHHHHHHHHHHCHHH
T ss_pred ---------c---CCeEEEEEeeCcCcCCcccccccccccccchHHHHHHHHcCCCCC--CCCCHHHHHHHHHHhcCccc
Confidence 6 79999999999999998765421100 001111 1233 38899999999999996642
Q ss_pred ccccCceecccCC
Q psy13409 315 CERETGLYYAKAD 327 (330)
Q Consensus 315 ~~~~~G~~~~~~~ 327 (330)
++++||+.|...+
T Consensus 248 ~~~~tG~~i~vdg 260 (280)
T 1xkq_A 248 SFYILGQSIVADG 260 (280)
T ss_dssp HTTCCSCEEEEST
T ss_pred ccCccCCeEEECC
Confidence 6799999986543
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-39 Score=293.62 Aligned_cols=239 Identities=26% Similarity=0.277 Sum_probs=203.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEE-ecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMA-CRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~-~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
.++||++|||||++|||++++++|+++|++|+++ .|+.+.+++..+++.. .+.++.++.+|+++.++++++++
T Consensus 4 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~D~~~~~~~~~~~~ 77 (255)
T 3icc_A 4 MLKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQS------NGGSAFSIGANLESLHGVEALYS 77 (255)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHHH------TTCEEEEEECCTTSHHHHHHHHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHh------cCCceEEEecCcCCHHHHHHHHH
Confidence 4789999999999999999999999999999885 6777788888877766 36789999999999999999999
Q ss_pred HHHhcC------CCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCC
Q psy13409 92 EILDNE------SAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGD 163 (330)
Q Consensus 92 ~i~~~~------g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~ 163 (330)
++.+.+ +++|++|||||..... .+.+.++|++++++|+.+++.+++.++|.|.+ .++||++||.++..+.
T Consensus 78 ~~~~~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~~~iv~isS~~~~~~~ 155 (255)
T 3icc_A 78 SLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRD--NSRIINISSAATRISL 155 (255)
T ss_dssp HHHHHHHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEE--EEEEEEECCGGGTSCC
T ss_pred HHHHHhcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCC--CCEEEEeCChhhccCC
Confidence 987765 3599999999986543 57789999999999999999999999998843 5899999999887774
Q ss_pred CCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccc
Q psy13409 164 GSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHY 243 (330)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (330)
+....|++||+|+++|+++++.|++
T Consensus 156 --------------~~~~~Y~asKaa~~~~~~~la~e~~----------------------------------------- 180 (255)
T 3icc_A 156 --------------PDFIAYSMTKGAINTMTFTLAKQLG----------------------------------------- 180 (255)
T ss_dssp --------------TTBHHHHHHHHHHHHHHHHHHHHHG-----------------------------------------
T ss_pred --------------CCcchhHHhHHHHHHHHHHHHHHHH-----------------------------------------
Confidence 7789999999999999999999998
Q ss_pred ccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceec
Q psy13409 244 CKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYY 323 (330)
Q Consensus 244 ~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~ 323 (330)
+ .||+||+|+||+|+|++.+...................++.+|+|+|++++||+++ .++++||++|
T Consensus 181 ---------~---~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~-~~~~~tG~~i 247 (255)
T 3icc_A 181 ---------A---RGITVNAILPGFVKTDMNAELLSDPMMKQYATTISAFNRLGEVEDIADTAAFLASP-DSRWVTGQLI 247 (255)
T ss_dssp ---------G---GTCEEEEEEECCBCCSSSTTTTTSHHHHHHHHHTSTTSSCBCHHHHHHHHHHHHSG-GGTTCCSCEE
T ss_pred ---------h---cCeEEEEEEEeeecccchhhhcccHHHHHhhhccCCcCCCCCHHHHHHHHHHHhCc-ccCCccCCEE
Confidence 5 79999999999999999887665443333333323333488999999999999965 5689999998
Q ss_pred ccCC
Q psy13409 324 AKAD 327 (330)
Q Consensus 324 ~~~~ 327 (330)
...+
T Consensus 248 ~vdg 251 (255)
T 3icc_A 248 DVSG 251 (255)
T ss_dssp EESS
T ss_pred EecC
Confidence 7643
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=307.34 Aligned_cols=238 Identities=21% Similarity=0.261 Sum_probs=202.1
Q ss_pred cCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecC----------hhHHHHHHHHHHHhhcccCCCCeEEEEEc
Q psy13409 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRS----------LEKAETAADDIRTSLKDVKDAGEVVIRQL 78 (330)
Q Consensus 9 ~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~----------~~~l~~~~~~l~~~~~~~~~~~~v~~i~~ 78 (330)
.+|.+++||++|||||++|||+++|++|+++|++|++++|+ .+.+++..+++.. .+.++.++.+
T Consensus 20 ~~m~~l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 93 (322)
T 3qlj_A 20 GSMGVVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITA------AGGEAVADGS 93 (322)
T ss_dssp --CCTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHH------TTCEEEEECC
T ss_pred chhcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHh------cCCcEEEEEC
Confidence 44557999999999999999999999999999999999998 6777888777765 3678999999
Q ss_pred cCCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC------CCe
Q psy13409 79 DLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA------PAR 150 (330)
Q Consensus 79 Dls~~~si~~l~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~------~g~ 150 (330)
|++|+++++++++++.+.++++|+||||||..... .+.+.++|++.+++|+.+++++++.+++.|.+.+ .|+
T Consensus 94 Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 173 (322)
T 3qlj_A 94 NVADWDQAAGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGR 173 (322)
T ss_dssp CTTSHHHHHHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEE
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcE
Confidence 99999999999999999999999999999987643 6789999999999999999999999999987643 379
Q ss_pred EEEEcCCCcccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhh
Q psy13409 151 IINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTIL 230 (330)
Q Consensus 151 IV~iSS~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (330)
||++||..+..+. ++...|++||+|+++|++++|.|++
T Consensus 174 IV~isS~~~~~~~--------------~~~~~Y~asKaal~~l~~~la~e~~---------------------------- 211 (322)
T 3qlj_A 174 IINTSSGAGLQGS--------------VGQGNYSAAKAGIATLTLVGAAEMG---------------------------- 211 (322)
T ss_dssp EEEECCHHHHHCB--------------TTCHHHHHHHHHHHHHHHHHHHHHG----------------------------
T ss_pred EEEEcCHHHccCC--------------CCCccHHHHHHHHHHHHHHHHHHhc----------------------------
Confidence 9999999887774 6788999999999999999999999
Q ss_pred hhcccCCCCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhh
Q psy13409 231 LCDANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCA 310 (330)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~ 310 (330)
+ .||+||+|+|| ++|++......... ..+..+....+|+|+|++++||+
T Consensus 212 ----------------------~---~gI~vn~v~PG-~~t~~~~~~~~~~~-----~~~~~~~~~~~pedva~~v~~L~ 260 (322)
T 3qlj_A 212 ----------------------R---YGVTVNAIAPS-ARTRMTETVFAEMM-----ATQDQDFDAMAPENVSPLVVWLG 260 (322)
T ss_dssp ----------------------G---GTEEEEEEEEC-TTSCCSCCSCCC-------------CCTTCGGGTHHHHHHHT
T ss_pred ----------------------c---cCcEEEEecCC-CCCccchhhhhhhh-----hccccccCCCCHHHHHHHHHHHh
Confidence 5 79999999999 99998876543221 12233333679999999999999
Q ss_pred ccccccccCceecccC
Q psy13409 311 LDKKCERETGLYYAKA 326 (330)
Q Consensus 311 ~~~~~~~~~G~~~~~~ 326 (330)
++ .++++||++|...
T Consensus 261 s~-~~~~itG~~i~vd 275 (322)
T 3qlj_A 261 SA-EARDVTGKVFEVE 275 (322)
T ss_dssp SG-GGGGCCSCEEEEE
T ss_pred Cc-cccCCCCCEEEEC
Confidence 66 5679999998643
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-39 Score=295.21 Aligned_cols=242 Identities=20% Similarity=0.218 Sum_probs=202.4
Q ss_pred cCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEE-EecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHH
Q psy13409 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIM-ACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVR 87 (330)
Q Consensus 9 ~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil-~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~ 87 (330)
..+..+++|++|||||++|||++++++|+++|++|++ ..|+.+.+++..+++.+. +.++.++.+|++++++++
T Consensus 19 ~~~~~l~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dl~~~~~~~ 92 (267)
T 4iiu_A 19 YFQSNAMSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQETLNAIVAN------GGNGRLLSFDVANREQCR 92 (267)
T ss_dssp ------CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHH
T ss_pred hhccccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc------CCceEEEEecCCCHHHHH
Confidence 3444689999999999999999999999999999866 557778888888877663 678999999999999999
Q ss_pred HHHHHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHh-hhCCCeEEEEcCCCcccCCC
Q psy13409 88 KCAQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRII-KSAPARIINLSSLAHTWGDG 164 (330)
Q Consensus 88 ~l~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~-~~~~g~IV~iSS~~~~~~~~ 164 (330)
++++++.+.++++|++|||||..... .+.+.++|++.+++|+.+++++++.+++.|. +++.++||++||.++..+.
T Consensus 93 ~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~- 171 (267)
T 4iiu_A 93 EVLEHEIAQHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSSVSGVMGN- 171 (267)
T ss_dssp HHHHHHHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCHHHHHCC-
T ss_pred HHHHHHHHHhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcchHhccCC-
Confidence 99999999999999999999987643 5778999999999999999999999998886 4567999999999888775
Q ss_pred CCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccc
Q psy13409 165 SMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYC 244 (330)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
++...|++||+|+++|+++++.|++
T Consensus 172 -------------~~~~~Y~asKaa~~~~~~~la~e~~------------------------------------------ 196 (267)
T 4iiu_A 172 -------------RGQVNYSAAKAGIIGATKALAIELA------------------------------------------ 196 (267)
T ss_dssp -------------TTCHHHHHHHHHHHHHHHHHHHHHG------------------------------------------
T ss_pred -------------CCCchhHHHHHHHHHHHHHHHHHHh------------------------------------------
Confidence 6788999999999999999999998
Q ss_pred cccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecc
Q psy13409 245 KNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYA 324 (330)
Q Consensus 245 ~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~ 324 (330)
+ .||+||+|+||+|+|++.... ..............++.+|+|+|++++||+++ .++++||+.|.
T Consensus 197 --------~---~gi~v~~v~PG~v~t~~~~~~---~~~~~~~~~~~p~~~~~~~edva~~~~~L~s~-~~~~itG~~i~ 261 (267)
T 4iiu_A 197 --------K---RKITVNCIAPGLIDTGMIEME---ESALKEAMSMIPMKRMGQAEEVAGLASYLMSD-IAGYVTRQVIS 261 (267)
T ss_dssp --------G---GTEEEEEEEECSBCSTTCCCC---HHHHHHHHHTCTTCSCBCHHHHHHHHHHHHSG-GGTTCCSCEEE
T ss_pred --------h---cCeEEEEEEEeeecCCccccc---HHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCC-cccCccCCEEE
Confidence 5 799999999999999988654 22222222333333488999999999999966 56799999987
Q ss_pred cCC
Q psy13409 325 KAD 327 (330)
Q Consensus 325 ~~~ 327 (330)
..+
T Consensus 262 vdG 264 (267)
T 4iiu_A 262 ING 264 (267)
T ss_dssp EST
T ss_pred eCC
Confidence 543
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-39 Score=293.52 Aligned_cols=234 Identities=22% Similarity=0.246 Sum_probs=195.6
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
.+++||++|||||++|||++++++|+++|++|++++|+.+. ++..+++ . + .++.+|++++++++++++
T Consensus 2 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~---------~-~-~~~~~D~~~~~~~~~~~~ 69 (256)
T 2d1y_A 2 GLFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEVAEAI---------G-G-AFFQVDLEDERERVRFVE 69 (256)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-HHHHHHH---------T-C-EEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH-HHHHHHh---------h-C-CEEEeeCCCHHHHHHHHH
Confidence 46899999999999999999999999999999999999876 5544433 1 3 678999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 92 EILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
++.+.++++|++|||||.... ..+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||..+..+.
T Consensus 70 ~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~------ 143 (256)
T 2d1y_A 70 EAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAE------ 143 (256)
T ss_dssp HHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSBC------
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccccccCCC------
Confidence 999999999999999998753 257788999999999999999999999999988878999999999887664
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
+....|++||++++.|+++++.|++
T Consensus 144 --------~~~~~Y~~sK~a~~~~~~~la~e~~----------------------------------------------- 168 (256)
T 2d1y_A 144 --------QENAAYNASKGGLVNLTRSLALDLA----------------------------------------------- 168 (256)
T ss_dssp --------TTBHHHHHHHHHHHHHHHHHHHHHG-----------------------------------------------
T ss_pred --------CCChhHHHHHHHHHHHHHHHHHHHh-----------------------------------------------
Confidence 6788999999999999999999998
Q ss_pred CCCCCCCCceeEEEeeCcccccCccccc----CCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCceec
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHF----DSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYY 323 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~ 323 (330)
+ .||+||+|+||+|+|++.... .......+... .++++ +.+|+|+|++++||+++ .+++++|+.|
T Consensus 169 ---~---~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~dvA~~~~~l~s~-~~~~~~G~~~ 239 (256)
T 2d1y_A 169 ---P---LRIRVNAVAPGAIATEAVLEAIALSPDPERTRRDWEDLHALRR--LGKPEEVAEAVLFLASE-KASFITGAIL 239 (256)
T ss_dssp ---G---GTEEEEEEEECSBCCHHHHHHHC--------CHHHHTTSTTSS--CBCHHHHHHHHHHHHSG-GGTTCCSCEE
T ss_pred ---h---cCeEEEEEeeCCccCchhhhccccccCCHHHHHHHHhcCCCCC--CcCHHHHHHHHHHHhCc-hhcCCCCCEE
Confidence 5 799999999999999986542 10111111121 23333 88999999999999966 4679999988
Q ss_pred ccCC
Q psy13409 324 AKAD 327 (330)
Q Consensus 324 ~~~~ 327 (330)
....
T Consensus 240 ~v~g 243 (256)
T 2d1y_A 240 PVDG 243 (256)
T ss_dssp EEST
T ss_pred EECC
Confidence 6543
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-39 Score=295.12 Aligned_cols=243 Identities=15% Similarity=0.087 Sum_probs=196.1
Q ss_pred ccCCCCCCCCEEEEEcCC--CchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHH
Q psy13409 8 CTADTRLDGKTAIVTGSN--TGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKS 85 (330)
Q Consensus 8 ~~~~~~~~gk~aLITGas--~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~s 85 (330)
+....++++|++|||||+ +|||++++++|+++|++|++++|+....+ ..+++.+. ..++.++.||++++++
T Consensus 6 ~~~~~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~------~~~~~~~~~Dv~~~~~ 78 (271)
T 3ek2_A 6 HHHMGFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKD-RITEFAAE------FGSELVFPCDVADDAQ 78 (271)
T ss_dssp ---CCTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHH-HHHHHHHH------TTCCCEEECCTTCHHH
T ss_pred CCCccccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHH-HHHHHHHH------cCCcEEEECCCCCHHH
Confidence 344567899999999998 99999999999999999999999965433 34444333 2357899999999999
Q ss_pred HHHHHHHHHhcCCCeeEEEEcCCCCCC------CCC-CChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCC
Q psy13409 86 VRKCAQEILDNESAIHLLINNAGVMMC------PRQ-LTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLA 158 (330)
Q Consensus 86 i~~l~~~i~~~~g~iDvlInnAG~~~~------~~~-~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~ 158 (330)
++++++++.+.++++|+||||||+... ..+ .+.++|++.+++|+.+++++++.++|.|.+ .|+||++||.+
T Consensus 79 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~g~iv~isS~~ 156 (271)
T 3ek2_A 79 IDALFASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSD--DASLLTLSYLG 156 (271)
T ss_dssp HHHHHHHHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEE--EEEEEEEECGG
T ss_pred HHHHHHHHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhcc--CceEEEEeccc
Confidence 999999999999999999999998643 233 889999999999999999999999998864 58999999998
Q ss_pred cccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCC
Q psy13409 159 HTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQT 238 (330)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (330)
+..+. +....|++||+|+++|+++++.|++
T Consensus 157 ~~~~~--------------~~~~~Y~asKaa~~~~~~~la~e~~------------------------------------ 186 (271)
T 3ek2_A 157 AERAI--------------PNYNTMGLAKAALEASVRYLAVSLG------------------------------------ 186 (271)
T ss_dssp GTSBC--------------TTTTHHHHHHHHHHHHHHHHHHHHH------------------------------------
T ss_pred cccCC--------------CCccchhHHHHHHHHHHHHHHHHHH------------------------------------
Confidence 87764 6788999999999999999999998
Q ss_pred CCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhcccccccc
Q psy13409 239 PTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERE 318 (330)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~ 318 (330)
+ .||+||+|+||+|+|++.+.........+.........++.+|+|+|++++||+++ .++++
T Consensus 187 --------------~---~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~pedva~~i~~l~s~-~~~~~ 248 (271)
T 3ek2_A 187 --------------A---KGVRVNAISAGPIKTLAASGIKSFGKILDFVESNSPLKRNVTIEQVGNAGAFLLSD-LASGV 248 (271)
T ss_dssp --------------T---TTCEEEEEEECCC-----CCCHHHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSG-GGTTC
T ss_pred --------------h---cCcEEEEEecCcccchhhhcccchHHHHHHHHhcCCcCCCCCHHHHHHHHHHHcCc-ccCCe
Confidence 6 79999999999999999876543333333333333333389999999999999965 56799
Q ss_pred CceecccCC
Q psy13409 319 TGLYYAKAD 327 (330)
Q Consensus 319 ~G~~~~~~~ 327 (330)
||+.|...+
T Consensus 249 tG~~i~vdg 257 (271)
T 3ek2_A 249 TAEVMHVDS 257 (271)
T ss_dssp CSEEEEEST
T ss_pred eeeEEEECC
Confidence 999987554
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-39 Score=302.41 Aligned_cols=242 Identities=23% Similarity=0.243 Sum_probs=201.8
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCC---eEEEEEccCCCHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG---EVVIRQLDLSSLKSVR 87 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~---~v~~i~~Dls~~~si~ 87 (330)
+++++||++|||||++|||++++++|+++|++|++++|+.+++++..+++... +. ++.++.+|++++++++
T Consensus 21 m~~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~~~~Dv~d~~~v~ 94 (297)
T 1xhl_A 21 MARFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKA------GVPAEKINAVVADVTEASGQD 94 (297)
T ss_dssp --CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCGGGEEEEECCTTSHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCCCceEEEEecCCCCHHHHH
Confidence 34689999999999999999999999999999999999999888887777652 33 7899999999999999
Q ss_pred HHHHHHHhcCCCeeEEEEcCCCCCC----CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCC
Q psy13409 88 KCAQEILDNESAIHLLINNAGVMMC----PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGD 163 (330)
Q Consensus 88 ~l~~~i~~~~g~iDvlInnAG~~~~----~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~ 163 (330)
++++++.+.++++|+||||||.... ..+.+.++|++.+++|+.+++.+++.++|.|.+++ |+||++||..+..+.
T Consensus 95 ~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-g~IV~isS~~~~~~~ 173 (297)
T 1xhl_A 95 DIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK-GEIVNVSSIVAGPQA 173 (297)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEECCGGGSSSC
T ss_pred HHHHHHHHhcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CEEEEEcCchhccCC
Confidence 9999999999999999999997643 34678899999999999999999999999998776 999999998876552
Q ss_pred CCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccc
Q psy13409 164 GSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHY 243 (330)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (330)
.++...|++||+|++.|+++++.|++
T Consensus 174 -------------~~~~~~Y~asKaa~~~l~~~la~el~----------------------------------------- 199 (297)
T 1xhl_A 174 -------------HSGYPYYACAKAALDQYTRCTAIDLI----------------------------------------- 199 (297)
T ss_dssp -------------CTTSHHHHHHHHHHHHHHHHHHHHHG-----------------------------------------
T ss_pred -------------CCCcchHHHHHHHHHHHHHHHHHHhc-----------------------------------------
Confidence 15678999999999999999999998
Q ss_pred ccccccCCCCCCCCceeEEEeeCcccccCcccccCCCch----hhHHHH-----HHhhhhhccChHHHHHHHHHhhcccc
Q psy13409 244 CKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIP----GTAWLY-----QRVGGLFIKSPLQGAQTTLYCALDKK 314 (330)
Q Consensus 244 ~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~----~~~~~~-----~~~~~~~~~~~~e~a~~~~~l~~~~~ 314 (330)
+ .||+||+|+||+|+|++......... ..+... .+++ ++.+|+|+|++++||++++.
T Consensus 200 ---------~---~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--r~~~pedvA~~v~~l~s~~~ 265 (297)
T 1xhl_A 200 ---------Q---HGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKECIPVG--HCGKPEEIANIIVFLADRNL 265 (297)
T ss_dssp ---------G---GTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTCTTS--SCBCHHHHHHHHHHHHCHHH
T ss_pred ---------c---cCeEEEEEeeCCCcCccccccccccccccchHHHHHHHHhcCCCC--CCcCHHHHHHHHHHHhCCcc
Confidence 5 79999999999999998765421100 001111 1233 38899999999999997642
Q ss_pred ccccCceecccCC
Q psy13409 315 CERETGLYYAKAD 327 (330)
Q Consensus 315 ~~~~~G~~~~~~~ 327 (330)
++++||+.|...+
T Consensus 266 ~~~itG~~i~vdG 278 (297)
T 1xhl_A 266 SSYIIGQSIVADG 278 (297)
T ss_dssp HTTCCSCEEEEST
T ss_pred cCCccCcEEEECC
Confidence 6799999986543
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-39 Score=297.46 Aligned_cols=240 Identities=18% Similarity=0.232 Sum_probs=199.7
Q ss_pred CcccCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHH
Q psy13409 6 GKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKS 85 (330)
Q Consensus 6 ~~~~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~s 85 (330)
+.++.+++++||++|||||++|||++++++|+++|++|++++|+.++++++.+++ +.++.++.+|++++++
T Consensus 20 ~~m~~~~~l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~---------~~~~~~~~~Dl~~~~~ 90 (281)
T 3ppi_A 20 GSMVTIKQFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADEL---------GNRAEFVSTNVTSEDS 90 (281)
T ss_dssp ----CCGGGTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---------CTTEEEEECCTTCHHH
T ss_pred chhhhhhccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---------CCceEEEEcCCCCHHH
Confidence 3444556799999999999999999999999999999999999998887776665 4578999999999999
Q ss_pred HHHHHHHHHhcCCCeeEEEEc-CCCCCCC-------CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhh------hCCCeE
Q psy13409 86 VRKCAQEILDNESAIHLLINN-AGVMMCP-------RQLTEDGYELQFATNHLGHYLFTLLLLPRIIK------SAPARI 151 (330)
Q Consensus 86 i~~l~~~i~~~~g~iDvlInn-AG~~~~~-------~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~------~~~g~I 151 (330)
++++++.+ +.++++|++||| +|..... .+.+.++|++.+++|+.+++++++.+++.|.+ ++.|+|
T Consensus 91 v~~~~~~~-~~~~~id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~i 169 (281)
T 3ppi_A 91 VLAAIEAA-NQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGAL 169 (281)
T ss_dssp HHHHHHHH-TTSSEEEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEE
T ss_pred HHHHHHHH-HHhCCCCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEE
Confidence 99999999 888999999999 5544322 25788899999999999999999999999987 457899
Q ss_pred EEEcCCCcccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhh
Q psy13409 152 INLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILL 231 (330)
Q Consensus 152 V~iSS~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (330)
|++||..+..+. ++...|++||+|+++|+++|+.|++
T Consensus 170 v~isS~~~~~~~--------------~~~~~Y~asKaa~~~~~~~la~e~~----------------------------- 206 (281)
T 3ppi_A 170 VLTASIAGYEGQ--------------IGQTAYAAAKAGVIGLTIAAARDLS----------------------------- 206 (281)
T ss_dssp EEECCGGGTSCC--------------TTCHHHHHHHHHHHHHHHHHHHHHG-----------------------------
T ss_pred EEEecccccCCC--------------CCCcccHHHHHHHHHHHHHHHHHHh-----------------------------
Confidence 999999988774 6788999999999999999999998
Q ss_pred hcccCCCCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhh-hhccChHHHHHHHHHhh
Q psy13409 232 CDANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGG-LFIKSPLQGAQTTLYCA 310 (330)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~a~~~~~l~ 310 (330)
. .||+||+|+||+|+|++.+..... ........... .++.+|+|+|++++||+
T Consensus 207 ---------------------~---~gi~v~~v~PG~v~T~~~~~~~~~--~~~~~~~~~~~~~~~~~pedvA~~v~~l~ 260 (281)
T 3ppi_A 207 ---------------------S---AGIRVNTIAPGTMKTPIMESVGEE--ALAKFAANIPFPKRLGTPDEFADAAAFLL 260 (281)
T ss_dssp ---------------------G---GTEEEEEEEECSBCCHHHHTTCHH--HHHHHHHTCCSSSSCBCHHHHHHHHHHHH
T ss_pred ---------------------h---cCeEEEEEecCcCCchhhhcccHH--HHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Confidence 5 799999999999999998765321 12222222211 23789999999999999
Q ss_pred ccccccccCceecccCC
Q psy13409 311 LDKKCERETGLYYAKAD 327 (330)
Q Consensus 311 ~~~~~~~~~G~~~~~~~ 327 (330)
++ +++||+.|...+
T Consensus 261 s~---~~~tG~~i~vdG 274 (281)
T 3ppi_A 261 TN---GYINGEVMRLDG 274 (281)
T ss_dssp HC---SSCCSCEEEEST
T ss_pred cC---CCcCCcEEEECC
Confidence 64 589999987654
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-39 Score=297.59 Aligned_cols=232 Identities=22% Similarity=0.272 Sum_probs=194.6
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
.++++|++|||||++|||++++++|+++|++|++++|+.+++++..+++ ..++.++.+|++|+++++++++
T Consensus 2 ~~l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~D~~~~~~v~~~~~ 72 (263)
T 2a4k_A 2 GRLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL---------EAEAIAVVADVSDPKAVEAVFA 72 (263)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC---------CSSEEEEECCTTSHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---------cCceEEEEcCCCCHHHHHHHHH
Confidence 3588999999999999999999999999999999999988766654432 3568899999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 92 EILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
++.+.++++|++|||||.... ..+.+.++|++.+++|+.+++++++.++|.| ++ .|+||++||..+. +.
T Consensus 73 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~-~g~iv~isS~~~~-~~------ 143 (263)
T 2a4k_A 73 EALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVL-EE-GGSLVLTGSVAGL-GA------ 143 (263)
T ss_dssp HHHHHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-CT-TCEEEEECCCTTC-CH------
T ss_pred HHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHH-hc-CCEEEEEecchhc-CC------
Confidence 999999999999999998653 3577889999999999999999999999999 54 7999999999876 53
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
+....|++||+++++|+++++.|++
T Consensus 144 --------~~~~~Y~asK~a~~~~~~~la~e~~----------------------------------------------- 168 (263)
T 2a4k_A 144 --------FGLAHYAAGKLGVVGLARTLALELA----------------------------------------------- 168 (263)
T ss_dssp --------HHHHHHHHCSSHHHHHHHHHHHHHT-----------------------------------------------
T ss_pred --------CCcHHHHHHHHHHHHHHHHHHHHhh-----------------------------------------------
Confidence 5678999999999999999999998
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHH--HhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQ--RVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
+ .||+||+|+||+|+|++..... ....+.... ++++ +.+|+|+|+.++||+++ .++++||+.|...+
T Consensus 169 ---~---~gi~v~~v~PG~v~t~~~~~~~--~~~~~~~~~~~p~~~--~~~p~dvA~~v~~l~s~-~~~~~tG~~i~vdg 237 (263)
T 2a4k_A 169 ---R---KGVRVNVLLPGLIQTPMTAGLP--PWAWEQEVGASPLGR--AGRPEEVAQAALFLLSE-ESAYITGQALYVDG 237 (263)
T ss_dssp ---T---TTCEEEEEEECSBCCGGGTTSC--HHHHHHHHHTSTTCS--CBCHHHHHHHHHHHHSG-GGTTCCSCEEEEST
T ss_pred ---h---hCcEEEEEEeCcCcCchhhhcC--HHHHHHHHhcCCCCC--CcCHHHHHHHHHHHhCc-cccCCcCCEEEECC
Confidence 6 7999999999999999876542 111122222 3333 88999999999999965 56799999986543
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=302.18 Aligned_cols=237 Identities=17% Similarity=0.114 Sum_probs=199.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEe-cChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHH-------
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMAC-RSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLK------- 84 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~-R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~------- 84 (330)
++++|++|||||++|||+++++.|+++|++|++++ |+.++++++.+++... .+.++.++.+|+++++
T Consensus 43 ~l~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~~Dl~d~~~~~~~~~ 117 (328)
T 2qhx_A 43 APTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNAR-----RPNSAITVQADLSNVATAPVSGA 117 (328)
T ss_dssp --CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH-----STTCEEEEECCCSSSCBCC----
T ss_pred ccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhh-----cCCeEEEEEeeCCCchhcccccc
Confidence 48999999999999999999999999999999999 9998888888777633 2567999999999999
Q ss_pred ----------HHHHHHHHHHhcCCCeeEEEEcCCCCCC--CCCCC--------------hhhHHHhHHHHHHHHHHHHHH
Q psy13409 85 ----------SVRKCAQEILDNESAIHLLINNAGVMMC--PRQLT--------------EDGYELQFATNHLGHYLFTLL 138 (330)
Q Consensus 85 ----------si~~l~~~i~~~~g~iDvlInnAG~~~~--~~~~~--------------~~~~~~~l~vN~~g~~~l~~~ 138 (330)
+++++++++.+.++++|+||||||+... ..+.+ .++|+..+++|+.+++.+++.
T Consensus 118 ~~~~~~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ 197 (328)
T 2qhx_A 118 DGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKA 197 (328)
T ss_dssp ---CCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998643 24556 889999999999999999999
Q ss_pred HHHHHhhhC------CCeEEEEcCCCcccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhccccccccccc
Q psy13409 139 LLPRIIKSA------PARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCR 212 (330)
Q Consensus 139 ~l~~l~~~~------~g~IV~iSS~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~ 212 (330)
++|.|.+++ .|+||++||..+..+. ++...|++||+|+++|+++|+.|++
T Consensus 198 ~~~~m~~~~~~~~~~~g~IV~isS~~~~~~~--------------~~~~~Y~asKaal~~l~~~la~el~---------- 253 (328)
T 2qhx_A 198 FAHRVAGTPAKHRGTNYSIINMVDAMTNQPL--------------LGYTIYTMAKGALEGLTRSAALELA---------- 253 (328)
T ss_dssp HHHHHHHSCGGGSCSCEEEEEECCTTTTSCC--------------TTCHHHHHHHHHHHHHHHHHHHHHG----------
T ss_pred HHHHHHhcCCcCCCCCcEEEEECchhhccCC--------------CCcHHHHHHHHHHHHHHHHHHHHHh----------
Confidence 999998876 7899999999887764 6788999999999999999999998
Q ss_pred CchhhcccccccchhhhhhhcccCCCCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HH
Q psy13409 213 LPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QR 290 (330)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~ 290 (330)
+ .||+||+|+||+|+|++ ... ....+... .+
T Consensus 254 ----------------------------------------~---~gIrvn~v~PG~v~T~~-~~~---~~~~~~~~~~~p 286 (328)
T 2qhx_A 254 ----------------------------------------P---LQIRVNGVGPGLSVLVD-DMP---PAVWEGHRSKVP 286 (328)
T ss_dssp ----------------------------------------G---GTEEEEEEEESSBSCCC-CSC---HHHHHHHHTTCT
T ss_pred ----------------------------------------h---cCcEEEEEecCcccCCc-ccc---HHHHHHHHhhCC
Confidence 5 79999999999999998 332 11111121 13
Q ss_pred hhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 291 VGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 291 ~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
++ .++.+|+|+|++++||+++ .++++||++|...+
T Consensus 287 ~~-~r~~~pedvA~~v~~l~s~-~~~~itG~~i~vdG 321 (328)
T 2qhx_A 287 LY-QRDSSAAEVSDVVIFLCSS-KAKYITGTCVKVDG 321 (328)
T ss_dssp TT-TSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEEST
T ss_pred CC-CCCCCHHHHHHHHHHHhCc-cccCccCcEEEECC
Confidence 33 0388999999999999965 56799999987543
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=294.04 Aligned_cols=244 Identities=23% Similarity=0.261 Sum_probs=193.5
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
.++++|++|||||++|||++++++|+++|++|++++|+.++++++.+++..... .+.++.++.+|++++++++++++
T Consensus 2 ~~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~ 78 (278)
T 1spx_A 2 TRFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGV---SEQNVNSVVADVTTDAGQDEILS 78 (278)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC---CGGGEEEEECCTTSHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccc---CCCceeEEecccCCHHHHHHHHH
Confidence 357899999999999999999999999999999999999888887777632110 24578999999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCCC--CCC----ChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCc-ccCCC
Q psy13409 92 EILDNESAIHLLINNAGVMMCP--RQL----TEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAH-TWGDG 164 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~--~~~----~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~-~~~~~ 164 (330)
++.+.++++|+||||||..... .+. +.++|++.+++|+.+++.+++.++|.|.+++ |+||++||..+ ..+.
T Consensus 79 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-g~iv~isS~~~~~~~~- 156 (278)
T 1spx_A 79 TTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK-GEIVNISSIASGLHAT- 156 (278)
T ss_dssp HHHHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCTTSSSSCC-
T ss_pred HHHHHcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEEecccccccCC-
Confidence 9999999999999999986432 445 8899999999999999999999999998776 99999999987 5553
Q ss_pred CCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccc
Q psy13409 165 SMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYC 244 (330)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
+....|++||++++.|+++++.|++
T Consensus 157 -------------~~~~~Y~~sK~a~~~~~~~la~e~~------------------------------------------ 181 (278)
T 1spx_A 157 -------------PDFPYYSIAKAAIDQYTRNTAIDLI------------------------------------------ 181 (278)
T ss_dssp -------------TTSHHHHHHHHHHHHHHHHHHHHHG------------------------------------------
T ss_pred -------------CCccHHHHHHHHHHHHHHHHHHHHH------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred cccccCCCCCCCCceeEEEeeCcccccCcccccCCC-chh------hHHHHHHhhhhhccChHHHHHHHHHhhccccccc
Q psy13409 245 KNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSI-IPG------TAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCER 317 (330)
Q Consensus 245 ~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~ 317 (330)
+ .||+||+|+||+|+|++....... ... ........+..++.+|+|+|++++||++++ +++
T Consensus 182 --------~---~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~v~~l~s~~-~~~ 249 (278)
T 1spx_A 182 --------Q---HGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECVPAGVMGQPQDIAEVIAFLADRK-TSS 249 (278)
T ss_dssp --------G---GTCEEEEEEECCBCCCC--------------HHHHHHHHHHCTTSSCBCHHHHHHHHHHHHCHH-HHT
T ss_pred --------h---cCcEEEEEecCcccCccccccccCchhhhhhhHHHHHHHhcCCCcCCCCHHHHHHHHHHHcCcc-ccC
Confidence 5 799999999999999986543111 111 111111112223889999999999999664 456
Q ss_pred -cCceecccCC
Q psy13409 318 -ETGLYYAKAD 327 (330)
Q Consensus 318 -~~G~~~~~~~ 327 (330)
+||++|...+
T Consensus 250 ~~tG~~~~vdg 260 (278)
T 1spx_A 250 YIIGHQLVVDG 260 (278)
T ss_dssp TCCSCEEEEST
T ss_pred cccCcEEEECC
Confidence 9999986543
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-39 Score=293.42 Aligned_cols=234 Identities=20% Similarity=0.217 Sum_probs=198.9
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
+++||++|||||++|||++++++|+++|++|++++|+.+++++..+++ +.++.++.+|++++++++++++.
T Consensus 3 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~D~~~~~~v~~~~~~ 73 (253)
T 1hxh_A 3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL---------GERSMFVRHDVSSEADWTLVMAA 73 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH---------CTTEEEECCCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---------CCceEEEEccCCCHHHHHHHHHH
Confidence 578999999999999999999999999999999999988777665554 34688999999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 93 ILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
+.+.++++|+||||||.... ..+.+.++|++.+++|+.+++.+++.++|.|.+++ |+||++||..+..+.
T Consensus 74 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~------- 145 (253)
T 1hxh_A 74 VQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG-GSIINMASVSSWLPI------- 145 (253)
T ss_dssp HHHHHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC-EEEEEECCGGGTSCC-------
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC-CEEEEEcchhhcCCC-------
Confidence 99999999999999998653 35778899999999999999999999999998877 999999999887664
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
+....|++||++++.|+++++.|++
T Consensus 146 -------~~~~~Y~~sK~a~~~~~~~la~e~~------------------------------------------------ 170 (253)
T 1hxh_A 146 -------EQYAGYSASKAAVSALTRAAALSCR------------------------------------------------ 170 (253)
T ss_dssp -------TTBHHHHHHHHHHHHHHHHHHHHHH------------------------------------------------
T ss_pred -------CCCccHHHHHHHHHHHHHHHHHHhh------------------------------------------------
Confidence 6788999999999999999999998
Q ss_pred CCCCCCC--ceeEEEeeCcccccCcccccCCCchhhHH-H-----HHHhhhhhccChHHHHHHHHHhhccccccccCcee
Q psy13409 251 PPGANIT--NVNTYAVHPGVVDTELSRHFDSIIPGTAW-L-----YQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLY 322 (330)
Q Consensus 251 ~~~~~~~--~i~v~~v~pG~v~t~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~ 322 (330)
+ . ||+||+|+||+|+|++........ ..+. . ..++++ +.+|+|+|++++||+++ .++++||++
T Consensus 171 --~---~~~gi~v~~v~Pg~v~t~~~~~~~~~~-~~~~~~~~~~~~~p~~~--~~~~~dvA~~~~~l~s~-~~~~~tG~~ 241 (253)
T 1hxh_A 171 --K---QGYAIRVNSIHPDGIYTPMMQASLPKG-VSKEMVLHDPKLNRAGR--AYMPERIAQLVLFLASD-ESSVMSGSE 241 (253)
T ss_dssp --H---HTCCEEEEEEEESEECCHHHHHHSCTT-CCHHHHBCBTTTBTTCC--EECHHHHHHHHHHHHSG-GGTTCCSCE
T ss_pred --h---cCCCeEEEEEEeCCccCchhhhccchh-hhHHHHhhhhccCccCC--CCCHHHHHHHHHHHcCc-cccCCCCcE
Confidence 3 5 999999999999999865422111 1111 1 113333 78999999999999966 567999999
Q ss_pred cccCC
Q psy13409 323 YAKAD 327 (330)
Q Consensus 323 ~~~~~ 327 (330)
|...+
T Consensus 242 ~~vdg 246 (253)
T 1hxh_A 242 LHADN 246 (253)
T ss_dssp EEESS
T ss_pred EEECC
Confidence 87543
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-39 Score=292.92 Aligned_cols=241 Identities=26% Similarity=0.302 Sum_probs=199.3
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
..+++++|++|||||++|||++++++|+++|++|++++|+.+++++..+++ ..++.++.+|++|+++++++
T Consensus 6 ~~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~D~~d~~~v~~~ 76 (263)
T 3ak4_A 6 GIFDLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGL---------ENGGFAVEVDVTKRASVDAA 76 (263)
T ss_dssp CTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC---------TTCCEEEECCTTCHHHHHHH
T ss_pred cCcCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH---------hcCCeEEEEeCCCHHHHHHH
Confidence 345689999999999999999999999999999999999987766554332 22678899999999999999
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCC
Q psy13409 90 AQEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSM 166 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~ 166 (330)
++++.+.++++|+||||||.... ..+.+.++|+..+++|+.+++++++.++|.|.+++ .|+||++||..+..+.
T Consensus 77 ~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--- 153 (263)
T 3ak4_A 77 MQKAIDALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKVGA--- 153 (263)
T ss_dssp HHHHHHHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCC---
T ss_pred HHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEecccccccCC---
Confidence 99999999999999999998653 25778899999999999999999999999998876 6999999998877664
Q ss_pred cccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccc
Q psy13409 167 HFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKN 246 (330)
Q Consensus 167 ~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (330)
+....|++||++++.|+++++.|++
T Consensus 154 -----------~~~~~Y~~sK~a~~~~~~~la~e~~-------------------------------------------- 178 (263)
T 3ak4_A 154 -----------PLLAHYSASKFAVFGWTQALAREMA-------------------------------------------- 178 (263)
T ss_dssp -----------TTCHHHHHHHHHHHHHHHHHHHHHG--------------------------------------------
T ss_pred -----------CCchhHHHHHHHHHHHHHHHHHHHh--------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred cccCCCCCCCCceeEEEeeCcccccCcccccCC----C-----chhhHHHHHHhhhhhccChHHHHHHHHHhhccccccc
Q psy13409 247 VLFHPPGANITNVNTYAVHPGVVDTELSRHFDS----I-----IPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCER 317 (330)
Q Consensus 247 ~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~----~-----~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~ 317 (330)
+ .||+||+|+||+|+|++...... . ....+.........++.+|+|+|++++||+++ .+++
T Consensus 179 ------~---~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~v~~l~s~-~~~~ 248 (263)
T 3ak4_A 179 ------P---KNIRVNCVCPGFVKTAMQEREIIWEAELRGMTPEAVRAEYVSLTPLGRIEEPEDVADVVVFLASD-AARF 248 (263)
T ss_dssp ------G---GTCEEEEEEECSBTTHHHHHHHHHHHHHHTSCHHHHHHHHHHTCTTCSCBCHHHHHHHHHHHHSG-GGTT
T ss_pred ------H---cCeEEEEEecccccChhhhhhccccccccccCcHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCc-cccC
Confidence 5 79999999999999998654210 0 11111111211222388999999999999965 5679
Q ss_pred cCceecccCC
Q psy13409 318 ETGLYYAKAD 327 (330)
Q Consensus 318 ~~G~~~~~~~ 327 (330)
+||+.|....
T Consensus 249 ~tG~~~~vdg 258 (263)
T 3ak4_A 249 MTGQGINVTG 258 (263)
T ss_dssp CCSCEEEESS
T ss_pred CCCCEEEECc
Confidence 9999886543
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-39 Score=293.30 Aligned_cols=239 Identities=24% Similarity=0.268 Sum_probs=197.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
+|+||++|||||++|||++++++|+++|++|++++|+.+ ++..+++.. .+.++.++.+|++|++++++++++
T Consensus 1 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~l~~------~~~~~~~~~~D~~~~~~v~~~~~~ 72 (255)
T 2q2v_A 1 TLKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP--APALAEIAR------HGVKAVHHPADLSDVAQIEALFAL 72 (255)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC--HHHHHHHHT------TSCCEEEECCCTTSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch--HHHHHHHHh------cCCceEEEeCCCCCHHHHHHHHHH
Confidence 368999999999999999999999999999999999876 444455543 256788999999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 93 ILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
+.+.++++|++|||||.... ..+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||..+..+.
T Consensus 73 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------- 145 (255)
T 2q2v_A 73 AEREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARNWGRIINIASVHGLVGS------- 145 (255)
T ss_dssp HHHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCC-------
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcCchhccCC-------
Confidence 99999999999999998653 256788999999999999999999999999988878999999999887664
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
+....|++||+++++|+++++.|++
T Consensus 146 -------~~~~~Y~~sK~a~~~~~~~la~e~~------------------------------------------------ 170 (255)
T 2q2v_A 146 -------TGKAAYVAAKHGVVGLTKVVGLETA------------------------------------------------ 170 (255)
T ss_dssp -------TTBHHHHHHHHHHHHHHHHHHHHTT------------------------------------------------
T ss_pred -------CCchhHHHHHHHHHHHHHHHHHHhc------------------------------------------------
Confidence 6788999999999999999999998
Q ss_pred CCCCCCCceeEEEeeCcccccCcccccCCC-chh---h----HHH-HHHhhhhhccChHHHHHHHHHhhccccccccCce
Q psy13409 251 PPGANITNVNTYAVHPGVVDTELSRHFDSI-IPG---T----AWL-YQRVGGLFIKSPLQGAQTTLYCALDKKCERETGL 321 (330)
Q Consensus 251 ~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~-~~~---~----~~~-~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~ 321 (330)
+ .||+||+|+||+|+|++....... ... . ... .......++.+|+|+|++++||+++ .++++||+
T Consensus 171 --~---~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~~~~l~s~-~~~~~tG~ 244 (255)
T 2q2v_A 171 --T---SNVTCNAICPGWVLTPLVQKQIDDRAANGGDPLQAQHDLLAEKQPSLAFVTPEHLGELVLFLCSE-AGSQVRGA 244 (255)
T ss_dssp --T---SSEEEEEEEESSBCCHHHHHHHHHHHHHTCCHHHHHHHHHTTTCTTCCCBCHHHHHHHHHHHTSG-GGTTCCSC
T ss_pred --c---cCcEEEEEeeCCCcCcchhhhcccccccccchHHHHHHHHhccCCCCCCcCHHHHHHHHHHHhCC-ccCCCCCC
Confidence 6 799999999999999986542110 000 0 111 1111222378999999999999865 46799999
Q ss_pred ecccCC
Q psy13409 322 YYAKAD 327 (330)
Q Consensus 322 ~~~~~~ 327 (330)
.|...+
T Consensus 245 ~~~vdg 250 (255)
T 2q2v_A 245 AWNVDG 250 (255)
T ss_dssp EEEEST
T ss_pred EEEECC
Confidence 987543
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=291.50 Aligned_cols=232 Identities=22% Similarity=0.323 Sum_probs=198.5
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
.+++||++|||||++|||++++++|+++|++|++++|+.+++++..+++. .++.++.+|++++++++++++
T Consensus 3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~D~~~~~~v~~~~~ 73 (260)
T 1nff_A 3 GRLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA---------DAARYVHLDVTQPAQWKAAVD 73 (260)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG---------GGEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh---------cCceEEEecCCCHHHHHHHHH
Confidence 45899999999999999999999999999999999999887776655442 247889999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 92 EILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
++.+.++++|++|||||.... ..+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||..+..+.
T Consensus 74 ~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------ 147 (260)
T 1nff_A 74 TAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGT------ 147 (260)
T ss_dssp HHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC------
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEeehhhcCCC------
Confidence 999999999999999998653 256788999999999999999999999999998888999999999887764
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
++...|++||++++.|+++++.|++
T Consensus 148 --------~~~~~Y~~sK~a~~~~~~~la~e~~----------------------------------------------- 172 (260)
T 1nff_A 148 --------VACHGYTATKFAVRGLTKSTALELG----------------------------------------------- 172 (260)
T ss_dssp --------TTBHHHHHHHHHHHHHHHHHHHHHG-----------------------------------------------
T ss_pred --------CCchhHHHHHHHHHHHHHHHHHHhC-----------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
+ .||+||+|+||+|+|++.. ... ... . ..++++ +.+|+|+|++++||+++ .++++||+.|...+
T Consensus 173 ---~---~gi~v~~v~Pg~v~t~~~~-~~~-~~~-~--~~~~~~--~~~~~dvA~~v~~l~s~-~~~~~~G~~~~v~g 236 (260)
T 1nff_A 173 ---P---SGIRVNSIHPGLVKTPMTD-WVP-EDI-F--QTALGR--AAEPVEVSNLVVYLASD-ESSYSTGAEFVVDG 236 (260)
T ss_dssp ---G---GTEEEEEEEECCBCSGGGT-TSC-TTC-S--CCSSSS--CBCHHHHHHHHHHHHSG-GGTTCCSCEEEEST
T ss_pred ---c---cCcEEEEEEeCCCCCCccc-cch-hhH-H--hCccCC--CCCHHHHHHHHHHHhCc-cccCCcCCEEEECC
Confidence 5 7999999999999999865 211 100 0 123344 78999999999999966 56799999886543
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=294.51 Aligned_cols=235 Identities=15% Similarity=0.120 Sum_probs=196.2
Q ss_pred CCCCCEEEEEcCC--CchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSN--TGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 13 ~~~gk~aLITGas--~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
+++||++|||||+ +|||+++++.|+++|++|++++|+.+ .++..+++.+.. ..+.++.+|+++++++++++
T Consensus 3 ~l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~------~~~~~~~~D~~~~~~v~~~~ 75 (275)
T 2pd4_A 3 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQEL------NSPYVYELDVSKEEHFKSLY 75 (275)
T ss_dssp TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHHHHT------TCCCEEECCTTCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHHhc------CCcEEEEcCCCCHHHHHHHH
Confidence 4789999999999 99999999999999999999999976 444555554431 23778999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCC------CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCC
Q psy13409 91 QEILDNESAIHLLINNAGVMMC------PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDG 164 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~------~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~ 164 (330)
+++.+.++++|+||||||.... ..+.+.++|+..+++|+.+++++++.++|.|.+ +|+||++||..+..+.
T Consensus 76 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~g~iv~isS~~~~~~~- 152 (275)
T 2pd4_A 76 NSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNN--GASVLTLSYLGSTKYM- 152 (275)
T ss_dssp HHHHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE--EEEEEEEECGGGTSBC-
T ss_pred HHHHHHcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhcc--CCEEEEEecchhcCCC-
Confidence 9999999999999999998643 357889999999999999999999999999864 4899999998877664
Q ss_pred CCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccc
Q psy13409 165 SMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYC 244 (330)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
+....|++||+|+++|+++++.|++
T Consensus 153 -------------~~~~~Y~asK~a~~~~~~~la~e~~------------------------------------------ 177 (275)
T 2pd4_A 153 -------------AHYNVMGLAKAALESAVRYLAVDLG------------------------------------------ 177 (275)
T ss_dssp -------------TTCHHHHHHHHHHHHHHHHHHHHHH------------------------------------------
T ss_pred -------------CCchhhHHHHHHHHHHHHHHHHHhh------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred cccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCcee
Q psy13409 245 KNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLY 322 (330)
Q Consensus 245 ~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~ 322 (330)
+ .||+||+|+||+|+|++.+............. .++++ +.+|+|+|++++||+++ .++++||++
T Consensus 178 --------~---~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~~--~~~p~dva~~~~~l~s~-~~~~~tG~~ 243 (275)
T 2pd4_A 178 --------K---HHIRVNALSAGPIRTLASSGIADFRMILKWNEINAPLRK--NVSLEEVGNAGMYLLSS-LSSGVSGEV 243 (275)
T ss_dssp --------T---TTCEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTTSS--CCCHHHHHHHHHHHHSG-GGTTCCSCE
T ss_pred --------h---cCeEEEEEeeCccccchhhhccccHHHHHHHHhcCCcCC--CCCHHHHHHHHHHHhCc-cccCCCCCE
Confidence 6 79999999999999998765432111112222 23343 78999999999999965 567999998
Q ss_pred cccC
Q psy13409 323 YAKA 326 (330)
Q Consensus 323 ~~~~ 326 (330)
|...
T Consensus 244 ~~vd 247 (275)
T 2pd4_A 244 HFVD 247 (275)
T ss_dssp EEES
T ss_pred EEEC
Confidence 7543
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-39 Score=293.28 Aligned_cols=235 Identities=23% Similarity=0.331 Sum_probs=186.3
Q ss_pred ccCcccCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCH
Q psy13409 4 FSGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSL 83 (330)
Q Consensus 4 ~~~~~~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~ 83 (330)
+..++....++++|++|||||++|||++++++|+++|++|++++|+.+++ ..+.++.+|++|+
T Consensus 9 ~~~~~~~~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~-----------------~~~~~~~~Dl~d~ 71 (253)
T 2nm0_A 9 HHSSGLVPRSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPP-----------------EGFLAVKCDITDT 71 (253)
T ss_dssp -----------CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCC-----------------TTSEEEECCTTSH
T ss_pred ccCCCCCccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhh-----------------ccceEEEecCCCH
Confidence 34455666788999999999999999999999999999999999986532 1267899999999
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCccc
Q psy13409 84 KSVRKCAQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTW 161 (330)
Q Consensus 84 ~si~~l~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~ 161 (330)
++++++++++.+.++++|+||||||..... .+.+.++|++.+++|+.+++.+++.++|.|.+++.|+||++||..+..
T Consensus 72 ~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~ 151 (253)
T 2nm0_A 72 EQVEQAYKEIEETHGPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKGRVVLISSVVGLL 151 (253)
T ss_dssp HHHHHHHHHHHHHTCSCSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECchhhCC
Confidence 999999999999999999999999986532 567889999999999999999999999999888889999999998876
Q ss_pred CCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCc
Q psy13409 162 GDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTN 241 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (330)
+. +....|++||+|++.|+++++.|++
T Consensus 152 ~~--------------~~~~~Y~asK~a~~~~~~~la~e~~--------------------------------------- 178 (253)
T 2nm0_A 152 GS--------------AGQANYAASKAGLVGFARSLARELG--------------------------------------- 178 (253)
T ss_dssp CH--------------HHHHHHHHHHHHHHHHHHHHHHHHC---------------------------------------
T ss_pred CC--------------CCcHHHHHHHHHHHHHHHHHHHHhh---------------------------------------
Confidence 63 5678999999999999999999998
Q ss_pred ccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccC
Q psy13409 242 HYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERET 319 (330)
Q Consensus 242 ~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~ 319 (330)
. .||+||+|+||+|+|++....... ..+... .++++ +.+|+|+|+.++||+++ .++++|
T Consensus 179 -----------~---~gi~vn~v~PG~v~T~~~~~~~~~--~~~~~~~~~p~~~--~~~p~dvA~~i~~l~s~-~~~~~t 239 (253)
T 2nm0_A 179 -----------S---RNITFNVVAPGFVDTDMTKVLTDE--QRANIVSQVPLGR--YARPEEIAATVRFLASD-DASYIT 239 (253)
T ss_dssp -----------S---SSEEEEEEEECSBCC-----------CHHHHHTTCTTCS--CBCHHHHHHHHHHHHSG-GGTTCC
T ss_pred -----------h---cCeEEEEEEeCcCcCcchhhcCHH--HHHHHHhcCCCCC--CcCHHHHHHHHHHHhCc-cccCCc
Confidence 6 899999999999999987653221 111121 23333 88999999999999966 567999
Q ss_pred ceecccCC
Q psy13409 320 GLYYAKAD 327 (330)
Q Consensus 320 G~~~~~~~ 327 (330)
|++|...+
T Consensus 240 G~~i~vdG 247 (253)
T 2nm0_A 240 GAVIPVDG 247 (253)
T ss_dssp SCEEEEST
T ss_pred CcEEEECC
Confidence 99987654
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-38 Score=293.91 Aligned_cols=236 Identities=16% Similarity=0.156 Sum_probs=194.7
Q ss_pred CCCCCEEEEEcCC--CchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSN--TGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 13 ~~~gk~aLITGas--~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
+++||++|||||+ +|||+++++.|+++|++|++++|+.+ .++..+++.... +.+.++.+|+++++++++++
T Consensus 18 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~------~~~~~~~~Dl~~~~~v~~~~ 90 (285)
T 2p91_A 18 LLEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPK-LEKRVREIAKGF------GSDLVVKCDVSLDEDIKNLK 90 (285)
T ss_dssp TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGG-GHHHHHHHHHHT------TCCCEEECCTTCHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHHHHHHhc------CCeEEEEcCCCCHHHHHHHH
Confidence 4899999999999 99999999999999999999999985 444455554431 23678999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCC------CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCC
Q psy13409 91 QEILDNESAIHLLINNAGVMMC------PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDG 164 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~------~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~ 164 (330)
+++.+.++++|+||||||.... ..+.+.++|+..+++|+.+++++++.++|.|.++ +|+||++||..+..+.
T Consensus 91 ~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~g~iv~isS~~~~~~~- 168 (285)
T 2p91_A 91 KFLEENWGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGR-NGAIVTLSYYGAEKVV- 168 (285)
T ss_dssp HHHHHHTSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTS-CCEEEEEECGGGTSBC-
T ss_pred HHHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCEEEEEccchhccCC-
Confidence 9999999999999999998643 3477889999999999999999999999998754 5999999998876664
Q ss_pred CCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccc
Q psy13409 165 SMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYC 244 (330)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
+....|++||+|+++|+++++.|++
T Consensus 169 -------------~~~~~Y~~sK~a~~~~~~~la~e~~------------------------------------------ 193 (285)
T 2p91_A 169 -------------PHYNVMGIAKAALESTVRYLAYDIA------------------------------------------ 193 (285)
T ss_dssp -------------TTTTHHHHHHHHHHHHHHHHHHHHH------------------------------------------
T ss_pred -------------CCccHHHHHHHHHHHHHHHHHHHhc------------------------------------------
Confidence 6678899999999999999999998
Q ss_pred cccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCcee
Q psy13409 245 KNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLY 322 (330)
Q Consensus 245 ~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~ 322 (330)
+ .||+||+|+||+|+|++.+.........+... .++++ +.+|+|+|++++||+++ .++++||++
T Consensus 194 --------~---~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~dva~~~~~l~s~-~~~~~tG~~ 259 (285)
T 2p91_A 194 --------K---HGHRINAISAGPVKTLAAYSITGFHLLMEHTTKVNPFGK--PITIEDVGDTAVFLCSD-WARAITGEV 259 (285)
T ss_dssp --------T---TTCEEEEEEECCCCCSCC--CTTHHHHHHHHHHHSTTSS--CCCHHHHHHHHHHHTSG-GGTTCCSCE
T ss_pred --------c---cCcEEEEEEeCcccCchhhcccchHHHHHHHHhcCCCCC--CcCHHHHHHHHHHHcCC-cccCCCCCE
Confidence 6 79999999999999998765432111112221 23333 78999999999999965 567999998
Q ss_pred cccC
Q psy13409 323 YAKA 326 (330)
Q Consensus 323 ~~~~ 326 (330)
|...
T Consensus 260 ~~vd 263 (285)
T 2p91_A 260 VHVD 263 (285)
T ss_dssp EEES
T ss_pred EEEC
Confidence 7654
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=288.57 Aligned_cols=237 Identities=21% Similarity=0.308 Sum_probs=185.1
Q ss_pred ccCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHH
Q psy13409 8 CTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVR 87 (330)
Q Consensus 8 ~~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~ 87 (330)
+....++++|++|||||++|||++++++|+++|++|++++|+.+++++..+++ ..++.++.+|+++.++++
T Consensus 6 ~~~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~D~~~~~~~~ 76 (249)
T 3f9i_A 6 HHHMIDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNAL---------KDNYTIEVCNLANKEECS 76 (249)
T ss_dssp ---CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---------CSSEEEEECCTTSHHHHH
T ss_pred ccccccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh---------ccCccEEEcCCCCHHHHH
Confidence 34456789999999999999999999999999999999999998887776654 346889999999999988
Q ss_pred HHHHHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCC
Q psy13409 88 KCAQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGS 165 (330)
Q Consensus 88 ~l~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~ 165 (330)
+++++ .+++|++|||||..... .+.+.++|++.+++|+.+++.+++.++|.|.+++.|+||++||..+..+.
T Consensus 77 ~~~~~----~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~-- 150 (249)
T 3f9i_A 77 NLISK----TSNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIAGN-- 150 (249)
T ss_dssp HHHHT----CSCCSEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCC--CC--
T ss_pred HHHHh----cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEccHHhccCC--
Confidence 77654 47899999999987543 56788999999999999999999999999998888999999999987774
Q ss_pred CcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccc
Q psy13409 166 MHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCK 245 (330)
Q Consensus 166 ~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (330)
++...|++||+|+++|+++++.|++
T Consensus 151 ------------~~~~~Y~~sK~a~~~~~~~la~e~~------------------------------------------- 175 (249)
T 3f9i_A 151 ------------PGQANYCASKAGLIGMTKSLSYEVA------------------------------------------- 175 (249)
T ss_dssp ------------SCSHHHHHHHHHHHHHHHHHHHHHG-------------------------------------------
T ss_pred ------------CCCchhHHHHHHHHHHHHHHHHHHH-------------------------------------------
Confidence 6788999999999999999999998
Q ss_pred ccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceeccc
Q psy13409 246 NVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAK 325 (330)
Q Consensus 246 ~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~ 325 (330)
. .||+||+|+||+|+|++.+..... ..+.........++.+|+|+|++++||+++ .++++||+.|..
T Consensus 176 -------~---~gi~v~~v~PG~v~t~~~~~~~~~--~~~~~~~~~~~~~~~~~~dva~~~~~l~s~-~~~~~tG~~~~v 242 (249)
T 3f9i_A 176 -------T---RGITVNAVAPGFIKSDMTDKLNEK--QREAIVQKIPLGTYGIPEDVAYAVAFLASN-NASYITGQTLHV 242 (249)
T ss_dssp -------G---GTEEEEEEEECCBC------CCHH--HHHHHHHHCTTCSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEE
T ss_pred -------H---cCcEEEEEecCccccCcccccCHH--HHHHHHhcCCCCCCcCHHHHHHHHHHHcCC-ccCCccCcEEEE
Confidence 5 799999999999999998765322 222222323333488999999999999966 467999999875
Q ss_pred CC
Q psy13409 326 AD 327 (330)
Q Consensus 326 ~~ 327 (330)
.+
T Consensus 243 dg 244 (249)
T 3f9i_A 243 NG 244 (249)
T ss_dssp ST
T ss_pred CC
Confidence 43
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-38 Score=292.18 Aligned_cols=237 Identities=19% Similarity=0.132 Sum_probs=192.2
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEec-ChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCH----HHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACR-SLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSL----KSVR 87 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R-~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~----~si~ 87 (330)
+++||++|||||++|||++++++|+++|++|++++| +.++++++.++++.. .+.++.++.+|++++ ++++
T Consensus 8 ~~~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~ 82 (276)
T 1mxh_A 8 ASECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAA-----RAGSAVLCKGDLSLSSSLLDCCE 82 (276)
T ss_dssp ---CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH-----STTCEEEEECCCSSSTTHHHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHh-----cCCceEEEeccCCCccccHHHHH
Confidence 478999999999999999999999999999999999 888888887777653 245789999999999 9999
Q ss_pred HHHHHHHhcCCCeeEEEEcCCCCCCC--CCCCh-----------hhHHHhHHHHHHHHHHHHHHHHHHHhhhCC------
Q psy13409 88 KCAQEILDNESAIHLLINNAGVMMCP--RQLTE-----------DGYELQFATNHLGHYLFTLLLLPRIIKSAP------ 148 (330)
Q Consensus 88 ~l~~~i~~~~g~iDvlInnAG~~~~~--~~~~~-----------~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~------ 148 (330)
++++++.+.++++|+||||||+.... .+.+. ++|++.+++|+.+++++++.++|.|. ++.
T Consensus 83 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~~~~~~~~ 161 (276)
T 1mxh_A 83 DIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQG-EGGAWRSRN 161 (276)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC--------CCC
T ss_pred HHHHHHHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHh-cCCCCCCCC
Confidence 99999999999999999999986432 45666 89999999999999999999999987 555
Q ss_pred CeEEEEcCCCcccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhh
Q psy13409 149 ARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLT 228 (330)
Q Consensus 149 g~IV~iSS~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (330)
++||++||..+..+. ++...|++||+|++.|+++++.|++
T Consensus 162 g~iv~isS~~~~~~~--------------~~~~~Y~asK~a~~~l~~~la~e~~-------------------------- 201 (276)
T 1mxh_A 162 LSVVNLCDAMTDLPL--------------PGFCVYTMAKHALGGLTRAAALELA-------------------------- 201 (276)
T ss_dssp EEEEEECCGGGGSCC--------------TTCHHHHHHHHHHHHHHHHHHHHHG--------------------------
T ss_pred cEEEEECchhhcCCC--------------CCCeehHHHHHHHHHHHHHHHHHHh--------------------------
Confidence 899999999887764 6788999999999999999999998
Q ss_pred hhhhcccCCCCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhh-ccChHHHHHHHH
Q psy13409 229 ILLCDANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLF-IKSPLQGAQTTL 307 (330)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~a~~~~ 307 (330)
+ .||+||+|+||+|+|+ .... ..............+ +.+|+|+|++++
T Consensus 202 ------------------------~---~gi~v~~v~PG~v~t~--~~~~--~~~~~~~~~~~p~~r~~~~~~dva~~v~ 250 (276)
T 1mxh_A 202 ------------------------P---RHIRVNAVAPGLSLLP--PAMP--QETQEEYRRKVPLGQSEASAAQIADAIA 250 (276)
T ss_dssp ------------------------G---GTEEEEEEEESSBSCC--SSSC--HHHHHHHHTTCTTTSCCBCHHHHHHHHH
T ss_pred ------------------------h---cCeEEEEEecCcccCC--ccCC--HHHHHHHHhcCCCCCCCCCHHHHHHHHH
Confidence 5 7999999999999999 2221 111111222222233 789999999999
Q ss_pred HhhccccccccCceecccCC
Q psy13409 308 YCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 308 ~l~~~~~~~~~~G~~~~~~~ 327 (330)
||+++ .++++||++|...+
T Consensus 251 ~l~s~-~~~~~tG~~~~vdg 269 (276)
T 1mxh_A 251 FLVSK-DAGYITGTTLKVDG 269 (276)
T ss_dssp HHHSG-GGTTCCSCEEEEST
T ss_pred HHhCc-cccCccCcEEEECC
Confidence 99965 56799999986543
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-38 Score=288.41 Aligned_cols=230 Identities=23% Similarity=0.295 Sum_probs=183.3
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
+++++|++|||||++|||++++++|+++|++|++++|+.+. + .. .+.++.+|++|+++++++++
T Consensus 3 m~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~---------~------~~-~~~~~~~D~~d~~~~~~~~~ 66 (250)
T 2fwm_X 3 MDFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQ---------E------QY-PFATEVMDVADAAQVAQVCQ 66 (250)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCS---------S------CC-SSEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhh---------h------cC-CceEEEcCCCCHHHHHHHHH
Confidence 46899999999999999999999999999999999998651 0 11 27889999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 92 EILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
++.+.++++|+||||||.... ..+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||..+..+.
T Consensus 67 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~------ 140 (250)
T 2fwm_X 67 RLLAETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHTPR------ 140 (250)
T ss_dssp HHHHHCSCCCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCC------
T ss_pred HHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEEECchhhCCCC------
Confidence 999999999999999998653 357789999999999999999999999999998888999999999887664
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
+....|++||++++.|+++++.|++
T Consensus 141 --------~~~~~Y~~sK~a~~~~~~~la~e~~----------------------------------------------- 165 (250)
T 2fwm_X 141 --------IGMSAYGASKAALKSLALSVGLELA----------------------------------------------- 165 (250)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHHG-----------------------------------------------
T ss_pred --------CCCchHHHHHHHHHHHHHHHHHHhC-----------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCchhhH-HH---------HHHhhhhhccChHHHHHHHHHhhccccccccC
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTA-WL---------YQRVGGLFIKSPLQGAQTTLYCALDKKCERET 319 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~-~~---------~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~ 319 (330)
+ .||+||+|+||+|+|++...........+ .. ..++++ +.+|+|+|++++||+++ .++++|
T Consensus 166 ---~---~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~p~dvA~~v~~l~s~-~~~~~t 236 (250)
T 2fwm_X 166 ---G---SGVRCNVVSPGSTDTDMQRTLWVSDDAEEQRIRGFGEQFKLGIPLGK--IARPQEIANTILFLASD-LASHIT 236 (250)
T ss_dssp ---G---GTCEEEEEEECCC--------------------------------------CHHHHHHHHHHHHSG-GGTTCC
T ss_pred ---c---cCCEEEEEECCcccCccccccccChhHHHHHHhhhhhcccccCCCCC--CcCHHHHHHHHHHHhCc-cccCCC
Confidence 5 79999999999999998754321111011 11 123444 88999999999999966 467999
Q ss_pred ceecccCC
Q psy13409 320 GLYYAKAD 327 (330)
Q Consensus 320 G~~~~~~~ 327 (330)
|+.|...+
T Consensus 237 G~~i~vdG 244 (250)
T 2fwm_X 237 LQDIVVDG 244 (250)
T ss_dssp SCEEEEST
T ss_pred CCEEEECC
Confidence 99987544
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=293.62 Aligned_cols=234 Identities=25% Similarity=0.342 Sum_probs=196.7
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
..+++||++|||||++|||++++++|+++|++|++++|+.+.++++.+++ .++.++.+|++|++++++++
T Consensus 4 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~Dv~d~~~v~~~~ 73 (270)
T 1yde_A 4 GTRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL----------PGAVFILCDVTQEDDVKTLV 73 (270)
T ss_dssp CCTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC----------TTEEEEECCTTSHHHHHHHH
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----------cCCeEEEcCCCCHHHHHHHH
Confidence 34689999999999999999999999999999999999988766554432 13788999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCC---CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCc
Q psy13409 91 QEILDNESAIHLLINNAGVMMC---PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~---~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~ 167 (330)
+++.+.++++|++|||||.... ..+.+.++|++.+++|+.+++++++.++|.|.++ .|+||++||..+..+.
T Consensus 74 ~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~g~iv~isS~~~~~~~---- 148 (270)
T 1yde_A 74 SETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS-QGNVINISSLVGAIGQ---- 148 (270)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECCHHHHHCC----
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHC-CCEEEEEcCccccCCC----
Confidence 9999999999999999998642 3577889999999999999999999999999765 5999999998877774
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
+....|++||++++.|+++++.|++
T Consensus 149 ----------~~~~~Y~asKaa~~~~~~~la~e~~--------------------------------------------- 173 (270)
T 1yde_A 149 ----------AQAVPYVATKGAVTAMTKALALDES--------------------------------------------- 173 (270)
T ss_dssp ----------TTCHHHHHHHHHHHHHHHHHHHHHG---------------------------------------------
T ss_pred ----------CCCcccHHHHHHHHHHHHHHHHHhh---------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCCC-chhhHHH-----HHHhhhhhccChHHHHHHHHHhhccccccccCce
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSI-IPGTAWL-----YQRVGGLFIKSPLQGAQTTLYCALDKKCERETGL 321 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~ 321 (330)
+ .||+||+|+||+|+|++....... ....... ..++++ +.+|+|+|++++||+++ ++++||+
T Consensus 174 -----~---~gi~vn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~p~~r--~~~p~dva~~v~~L~s~--~~~itG~ 241 (270)
T 1yde_A 174 -----P---YGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQPLGR--MGQPAEVGAAAVFLASE--ANFCTGI 241 (270)
T ss_dssp -----G---GTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHHTSTTSS--CBCHHHHHHHHHHHHHH--CTTCCSC
T ss_pred -----h---hCcEEEEEEeCccccchhhhhhhcccchHHHHHHHhhcCCCCC--CcCHHHHHHHHHHHccc--CCCcCCC
Confidence 5 799999999999999986543211 1111111 124444 78999999999999975 4799999
Q ss_pred ecccC
Q psy13409 322 YYAKA 326 (330)
Q Consensus 322 ~~~~~ 326 (330)
.|.-.
T Consensus 242 ~i~vd 246 (270)
T 1yde_A 242 ELLVT 246 (270)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 88654
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-38 Score=293.70 Aligned_cols=239 Identities=19% Similarity=0.289 Sum_probs=197.6
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhH-HHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEK-AETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~-l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
++++||++|||||++|||++++++|+++|++|++++|+.+. ++++.+++.. .+.++.++.+|+++++++++++
T Consensus 25 ~~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~~D~~~~~~~~~~~ 98 (283)
T 1g0o_A 25 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKK------NGSDAACVKANVGVVEDIVRMF 98 (283)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH------TTCCEEEEECCTTCHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHH------hCCCeEEEEcCCCCHHHHHHHH
Confidence 45889999999999999999999999999999999998754 4555555554 2567899999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 91 QEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
+++.+.++++|+||||||.... ..+.+.++|++.+++|+.+++++++.+++.| ++.|+||++||..+..+.
T Consensus 99 ~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~--~~~g~iv~isS~~~~~~~----- 171 (283)
T 1g0o_A 99 EEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHL--EIGGRLILMGSITGQAKA----- 171 (283)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHS--CTTCEEEEECCGGGTCSS-----
T ss_pred HHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCCeEEEEechhhccCC-----
Confidence 9999999999999999998753 2567899999999999999999999999998 346899999998876653
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
.+....|++||+++++|+++++.|++
T Consensus 172 --------~~~~~~Y~asK~a~~~~~~~la~e~~---------------------------------------------- 197 (283)
T 1g0o_A 172 --------VPKHAVYSGSKGAIETFARCMAIDMA---------------------------------------------- 197 (283)
T ss_dssp --------CSSCHHHHHHHHHHHHHHHHHHHHHG----------------------------------------------
T ss_pred --------CCCCcchHHHHHHHHHHHHHHHHHhc----------------------------------------------
Confidence 12478999999999999999999998
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCC---------CchhhHHHHH----HhhhhhccChHHHHHHHHHhhccccc
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDS---------IIPGTAWLYQ----RVGGLFIKSPLQGAQTTLYCALDKKC 315 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~e~a~~~~~l~~~~~~ 315 (330)
+ .||+||+|+||+|+|++...... .......... ++++ +.+|+|+|++++||+++ .+
T Consensus 198 ----~---~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r--~~~p~dvA~~v~~l~s~-~~ 267 (283)
T 1g0o_A 198 ----D---KKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWSPLRR--VGLPIDIARVVCFLASN-DG 267 (283)
T ss_dssp ----G---GTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHHSCTTCS--CBCHHHHHHHHHHHHSG-GG
T ss_pred ----c---cCeEEEEEecCcccchhhhhhhhhccccccccCHHHHHHHHhhcCCCCCC--CcCHHHHHHHHHHHhCc-cc
Confidence 5 79999999999999998654311 0111111111 3333 88999999999999966 56
Q ss_pred cccCceecccCC
Q psy13409 316 ERETGLYYAKAD 327 (330)
Q Consensus 316 ~~~~G~~~~~~~ 327 (330)
+++||+.|...+
T Consensus 268 ~~itG~~i~vdg 279 (283)
T 1g0o_A 268 GWVTGKVIGIDG 279 (283)
T ss_dssp TTCCSCEEEEST
T ss_pred cCcCCCEEEeCC
Confidence 799999986543
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-38 Score=291.48 Aligned_cols=235 Identities=14% Similarity=0.127 Sum_probs=194.2
Q ss_pred CCCCCEEEEEcCC--CchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSN--TGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 13 ~~~gk~aLITGas--~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
+++||++|||||+ +|||++++++|+++|++|++++|+. +.++..+++.... ....++.+|+++++++++++
T Consensus 6 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~-~~~~~~~~l~~~~------~~~~~~~~D~~~~~~v~~~~ 78 (265)
T 1qsg_A 6 FLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFAAQL------GSDIVLQCDVAEDASIDTMF 78 (265)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST-TTHHHHHHHHHHT------TCCCEEECCTTCHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcH-HHHHHHHHHHHhc------CCcEEEEccCCCHHHHHHHH
Confidence 4899999999999 9999999999999999999999987 4444555554431 22378899999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCC------CCC-CChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCC
Q psy13409 91 QEILDNESAIHLLINNAGVMMC------PRQ-LTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGD 163 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~------~~~-~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~ 163 (330)
+++.+.++++|+||||||.... ..+ .+.++|++.+++|+.+++++++.++|.|.+ .|+||++||..+..+.
T Consensus 79 ~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~g~iv~isS~~~~~~~ 156 (265)
T 1qsg_A 79 AELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNP--GSALLTLSYLGAERAI 156 (265)
T ss_dssp HHHHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE--EEEEEEEECGGGTSBC
T ss_pred HHHHHHcCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhcc--CCEEEEEcchhhccCC
Confidence 9999999999999999998642 235 788999999999999999999999999864 4899999998876664
Q ss_pred CCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccc
Q psy13409 164 GSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHY 243 (330)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (330)
+....|++||+|++.|+++++.|++
T Consensus 157 --------------~~~~~Y~~sK~a~~~~~~~la~e~~----------------------------------------- 181 (265)
T 1qsg_A 157 --------------PNYNVMGLAKASLEANVRYMANAMG----------------------------------------- 181 (265)
T ss_dssp --------------TTTTHHHHHHHHHHHHHHHHHHHHT-----------------------------------------
T ss_pred --------------CCchHHHHHHHHHHHHHHHHHHHhh-----------------------------------------
Confidence 6678999999999999999999998
Q ss_pred ccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCce
Q psy13409 244 CKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGL 321 (330)
Q Consensus 244 ~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~ 321 (330)
+ .||+||+|+||+|+|++.+.........+... .++++ +.+|+|+|++++||+++ .++++||+
T Consensus 182 ---------~---~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~dva~~v~~l~s~-~~~~~tG~ 246 (265)
T 1qsg_A 182 ---------P---EGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRR--TVTIEDVGNSAAFLCSD-LSAGISGE 246 (265)
T ss_dssp ---------T---TTEEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTTSS--CCCHHHHHHHHHHHTSG-GGTTCCSC
T ss_pred ---------h---cCeEEEEEEeCCCccchhhcccccHHHHHHHHhcCCCCC--CCCHHHHHHHHHHHhCc-hhcCccCC
Confidence 5 79999999999999998765432111112221 23343 78999999999999965 56799999
Q ss_pred ecccC
Q psy13409 322 YYAKA 326 (330)
Q Consensus 322 ~~~~~ 326 (330)
.|...
T Consensus 247 ~~~vd 251 (265)
T 1qsg_A 247 VVHVD 251 (265)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 88654
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=291.32 Aligned_cols=239 Identities=15% Similarity=0.106 Sum_probs=195.8
Q ss_pred CCCCCCEEEEEcCC--CchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSN--TGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 12 ~~~~gk~aLITGas--~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
.+++||++|||||+ +|||++++++|+++|++|++++|+.+ .++..+++.+.. ..+.++.+|++++++++++
T Consensus 4 ~~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~------~~~~~~~~D~~~~~~v~~~ 76 (261)
T 2wyu_A 4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER-LRPEAEKLAEAL------GGALLFRADVTQDEELDAL 76 (261)
T ss_dssp ECCTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGG-GHHHHHHHHHHT------TCCEEEECCTTCHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHHHHHHhc------CCcEEEECCCCCHHHHHHH
Confidence 46889999999999 99999999999999999999999975 344445554431 2378899999999999999
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCC------CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCC
Q psy13409 90 AQEILDNESAIHLLINNAGVMMC------PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGD 163 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~------~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~ 163 (330)
++++.+.++++|+||||||.... ..+.+.++|++.+++|+.+++++++.++|.|.+ .|+||++||..+..+.
T Consensus 77 ~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~g~iv~isS~~~~~~~ 154 (261)
T 2wyu_A 77 FAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLRE--GGGIVTLTYYASEKVV 154 (261)
T ss_dssp HHHHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEE--EEEEEEEECGGGTSBC
T ss_pred HHHHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhcc--CCEEEEEecccccCCC
Confidence 99999999999999999998642 357789999999999999999999999998864 4899999998876663
Q ss_pred CCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccc
Q psy13409 164 GSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHY 243 (330)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (330)
+....|++||+|++.|+++++.|++
T Consensus 155 --------------~~~~~Y~asK~a~~~~~~~la~e~~----------------------------------------- 179 (261)
T 2wyu_A 155 --------------PKYNVMAIAKAALEASVRYLAYELG----------------------------------------- 179 (261)
T ss_dssp --------------TTCHHHHHHHHHHHHHHHHHHHHHG-----------------------------------------
T ss_pred --------------CCchHHHHHHHHHHHHHHHHHHHHh-----------------------------------------
Confidence 6778999999999999999999998
Q ss_pred ccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceec
Q psy13409 244 CKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYY 323 (330)
Q Consensus 244 ~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~ 323 (330)
+ .||+||+|+||+|+|++.....................++.+|+|+|++++||+++ .++++||+.|
T Consensus 180 ---------~---~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dva~~v~~l~s~-~~~~~tG~~~ 246 (261)
T 2wyu_A 180 ---------P---KGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPLRRNITQEEVGNLGLFLLSP-LASGITGEVV 246 (261)
T ss_dssp ---------G---GTCEEEEEEECCCCCTGGGGCTTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSG-GGTTCCSCEE
T ss_pred ---------h---hCcEEEEEeeCCCcCchhhhccccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCh-hhcCCCCCEE
Confidence 5 79999999999999998765432121122222222222378999999999999965 5679999988
Q ss_pred ccCC
Q psy13409 324 AKAD 327 (330)
Q Consensus 324 ~~~~ 327 (330)
...+
T Consensus 247 ~vdg 250 (261)
T 2wyu_A 247 YVDA 250 (261)
T ss_dssp EEST
T ss_pred EECC
Confidence 6543
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-38 Score=282.43 Aligned_cols=225 Identities=20% Similarity=0.264 Sum_probs=194.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
++|++|||||++|||++++++|+++|++|++++|+.+++++..+++.+. .+.++.++.+|++++++++++++++.
T Consensus 1 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~v~~~~~~~~ 75 (235)
T 3l77_A 1 EMKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQE-----QGVEVFYHHLDVSKAESVEEFSKKVL 75 (235)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH-----HCCCEEEEECCTTCHHHHHHHCC-HH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhh-----cCCeEEEEEeccCCHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999888888644 26789999999999999999999999
Q ss_pred hcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccc
Q psy13409 95 DNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDIN 172 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~ 172 (330)
+.++++|++|||||..... .+.+.++|+..+++|+.+++++++.++|.|. ++.+++|++||..+..+.
T Consensus 76 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~~~~ii~~sS~~~~~~~--------- 145 (235)
T 3l77_A 76 ERFGDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLK-RTGGLALVTTSDVSARLI--------- 145 (235)
T ss_dssp HHHSSCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHH-HHTCEEEEECCGGGSSCC---------
T ss_pred HhcCCCCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCcEEEEecchhcccC---------
Confidence 9999999999999987543 5779999999999999999999999999994 446899999998887764
Q ss_pred cccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCC
Q psy13409 173 LEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPP 252 (330)
Q Consensus 173 ~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (330)
+....|++||+|+++|+++++ +.
T Consensus 146 -----~~~~~Y~~sKaa~~~~~~~l~--~~-------------------------------------------------- 168 (235)
T 3l77_A 146 -----PYGGGYVSTKWAARALVRTFQ--IE-------------------------------------------------- 168 (235)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHH--HH--------------------------------------------------
T ss_pred -----CCcchHHHHHHHHHHHHHHHh--hc--------------------------------------------------
Confidence 667899999999999999994 33
Q ss_pred CCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceeccc
Q psy13409 253 GANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAK 325 (330)
Q Consensus 253 ~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~ 325 (330)
. +||+||+|+||+|+|++........... ++.+|+|+|++++||++++ .++++|+.+-.
T Consensus 169 ~---~~i~v~~v~PG~v~T~~~~~~~~~~~~~----------~~~~p~dva~~v~~l~~~~-~~~~~~~~~~~ 227 (235)
T 3l77_A 169 N---PDVRFFELRPGAVDTYFGGSKPGKPKEK----------GYLKPDEIAEAVRCLLKLP-KDVRVEELMLR 227 (235)
T ss_dssp C---TTSEEEEEEECSBSSSTTTCCSCCCGGG----------TCBCHHHHHHHHHHHHTSC-TTCCCCEEEEC
T ss_pred C---CCeEEEEEeCCccccccccccCCccccc----------CCCCHHHHHHHHHHHHcCC-CCCccceEEEe
Confidence 4 6999999999999999987765432211 3789999999999999775 56889987643
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-38 Score=286.30 Aligned_cols=230 Identities=22% Similarity=0.332 Sum_probs=186.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
|++|||||++|||++++++|+++|++|++++|+.+++++..+++ ..++.++.+|++++++++++++++.+.
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 71 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL---------GDNLYIAQLDVRNRAAIEEMLASLPAE 71 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---------CTTEEEEECCTTCHHHHHHHHHTSCTT
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---------cCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999988877766554 246889999999999999999999999
Q ss_pred CCCeeEEEEcCCCCC---CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccccc
Q psy13409 97 ESAIHLLINNAGVMM---CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINL 173 (330)
Q Consensus 97 ~g~iDvlInnAG~~~---~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~ 173 (330)
++++|+||||||+.. +..+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||..+..+.
T Consensus 72 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~---------- 141 (248)
T 3asu_A 72 WCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPY---------- 141 (248)
T ss_dssp TCCCCEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCC----------
T ss_pred CCCCCEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEccchhccCC----------
Confidence 999999999999863 2367889999999999999999999999999988888999999999887664
Q ss_pred ccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCC
Q psy13409 174 EKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPG 253 (330)
Q Consensus 174 ~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (330)
++...|++||+++++|+++++.|++ +
T Consensus 142 ----~~~~~Y~asKaa~~~~~~~la~e~~--------------------------------------------------~ 167 (248)
T 3asu_A 142 ----AGGNVYGATKAFVRQFSLNLRTDLH--------------------------------------------------G 167 (248)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHTT--------------------------------------------------T
T ss_pred ----CCCchHHHHHHHHHHHHHHHHHHhh--------------------------------------------------h
Confidence 6778999999999999999999998 6
Q ss_pred CCCCceeEEEeeCcccc-cCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 254 ANITNVNTYAVHPGVVD-TELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 254 ~~~~~i~v~~v~pG~v~-t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
.||+||+|+||+|+ |++......... .............+|+|+|+.++||++++ ++++|+.+.-.
T Consensus 168 ---~gi~v~~v~PG~v~gT~~~~~~~~~~~--~~~~~~~~~~~~~~p~dvA~~v~~l~s~~--~~~~g~~i~v~ 234 (248)
T 3asu_A 168 ---TAVRVTDIEPGLVGGTEFSNVRFKGDD--GKAEKTYQNTVALTPEDVSEAVWWVSTLP--AHVNINTLEMM 234 (248)
T ss_dssp ---SCCEEEEEEECSBCC------------------------CCBCHHHHHHHHHHHHHSC--TTCCCCEEEEC
T ss_pred ---cCcEEEEEeccccccCcchhhcccCch--HHHHHHHhccCCCCHHHHHHHHHHHhcCC--ccceeeEEEEc
Confidence 79999999999999 998643211000 01111111122579999999999999763 58899887643
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-38 Score=290.39 Aligned_cols=240 Identities=23% Similarity=0.248 Sum_probs=194.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEE-ecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMA-CRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~-~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
.++|++|||||++|||++++++|+++|++|+++ .|+.+.++++.+.+.+ .+.++.++.+|+++++++++++++
T Consensus 24 ~~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Dl~~~~~v~~~~~~ 97 (272)
T 4e3z_A 24 SDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITE------SGGEAVAIPGDVGNAADIAAMFSA 97 (272)
T ss_dssp CCSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH------TTCEEEEEECCTTCHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHh------cCCcEEEEEcCCCCHHHHHHHHHH
Confidence 468999999999999999999999999999776 7888888888777765 367899999999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCC---CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhh---CCCeEEEEcCCCcccCCCCC
Q psy13409 93 ILDNESAIHLLINNAGVMMC---PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKS---APARIINLSSLAHTWGDGSM 166 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~---~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~---~~g~IV~iSS~~~~~~~~~~ 166 (330)
+.+.++++|+||||||.... ..+.+.++|++.+++|+.+++++++.++|.|.+. ..|+||++||.++..+.
T Consensus 98 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--- 174 (272)
T 4e3z_A 98 VDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGS--- 174 (272)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHHCC---
T ss_pred HHHhCCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhccCC---
Confidence 99999999999999998753 2577899999999999999999999999999773 46899999999887764
Q ss_pred cccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccc
Q psy13409 167 HFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKN 246 (330)
Q Consensus 167 ~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (330)
.+....|++||+|+++|+++++.|++
T Consensus 175 ----------~~~~~~Y~asKaa~~~~~~~la~e~~-------------------------------------------- 200 (272)
T 4e3z_A 175 ----------ATQYVDYAASKAAIDTFTIGLAREVA-------------------------------------------- 200 (272)
T ss_dssp ----------TTTCHHHHHHHHHHHHHHHHHHHHHG--------------------------------------------
T ss_pred ----------CCCcchhHHHHHHHHHHHHHHHHHHH--------------------------------------------
Confidence 23667899999999999999999998
Q ss_pred cccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 247 VLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 247 ~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+ .||+||+|+||+|+|++........ ............++.+|+|+|++++||+++ .++++||++|...
T Consensus 201 ------~---~gi~v~~v~PG~v~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~edvA~~i~~l~s~-~~~~~tG~~i~vd 269 (272)
T 4e3z_A 201 ------A---EGIRVNAVRPGIIETDLHASGGLPD-RAREMAPSVPMQRAGMPEEVADAILYLLSP-SASYVTGSILNVS 269 (272)
T ss_dssp ------G---GTEEEEEEEECSBC-------------------CCTTSSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEES
T ss_pred ------H---cCcEEEEEecCCCcCCcccccCChH-HHHHHhhcCCcCCCcCHHHHHHHHHHHhCC-ccccccCCEEeec
Confidence 5 7999999999999999876532111 111222222222378999999999999965 5679999998754
Q ss_pred C
Q psy13409 327 D 327 (330)
Q Consensus 327 ~ 327 (330)
+
T Consensus 270 g 270 (272)
T 4e3z_A 270 G 270 (272)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-38 Score=291.16 Aligned_cols=226 Identities=21% Similarity=0.262 Sum_probs=192.8
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
+++++|++|||||++|||++++++|+++|++|++++|+.+.. ...++.++.+|++++++++++++
T Consensus 24 ~~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~---------------~~~~~~~~~~Dv~d~~~v~~~~~ 88 (260)
T 3un1_A 24 MRNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPS---------------ADPDIHTVAGDISKPETADRIVR 88 (260)
T ss_dssp HHTTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCC---------------SSTTEEEEESCTTSHHHHHHHHH
T ss_pred hCcCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhc---------------ccCceEEEEccCCCHHHHHHHHH
Confidence 468999999999999999999999999999999999986532 13468899999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 92 EILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
++.+.++++|++|||||+.... .+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||..+..+.
T Consensus 89 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~------ 162 (260)
T 3un1_A 89 EGIERFGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQGSGHIVSITTSLVDQPM------ 162 (260)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCTTTTSCB------
T ss_pred HHHHHCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechhhccCC------
Confidence 9999999999999999987543 57889999999999999999999999999999888999999998765332
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
+..+...|++||+|+++|++++|.|++
T Consensus 163 ------~~~~~~~Y~~sKaa~~~l~~~la~e~~----------------------------------------------- 189 (260)
T 3un1_A 163 ------VGMPSALASLTKGGLNAVTRSLAMEFS----------------------------------------------- 189 (260)
T ss_dssp ------TTCCCHHHHHHHHHHHHHHHHHHHHTT-----------------------------------------------
T ss_pred ------CCCccHHHHHHHHHHHHHHHHHHHHhC-----------------------------------------------
Confidence 124567899999999999999999998
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
+ .||+||+|+||+|+|++.... ...... .++++ +.+|+|+|++++||. .++++||+.|...+
T Consensus 190 ---~---~gI~vn~v~PG~v~t~~~~~~-----~~~~~~~~~p~~r--~~~~~dva~av~~L~---~~~~itG~~i~vdG 253 (260)
T 3un1_A 190 ---R---SGVRVNAVSPGVIKTPMHPAE-----THSTLAGLHPVGR--MGEIRDVVDAVLYLE---HAGFITGEILHVDG 253 (260)
T ss_dssp ---T---TTEEEEEEEECCBCCTTSCGG-----GHHHHHTTSTTSS--CBCHHHHHHHHHHHH---HCTTCCSCEEEEST
T ss_pred ---c---CCeEEEEEeecCCCCCCCCHH-----HHHHHhccCCCCC--CcCHHHHHHHHHHhc---ccCCCCCcEEEECC
Confidence 6 799999999999999987532 122222 24444 899999999999993 45699999987543
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-38 Score=285.50 Aligned_cols=242 Identities=21% Similarity=0.265 Sum_probs=202.4
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEec-ChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACR-SLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R-~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.++++|++|||||++|||++++++|+++|++|++++| +.+.+++..+++.. .+.++.++.+|+++++++++++
T Consensus 3 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~------~~~~~~~~~~D~~~~~~~~~~~ 76 (261)
T 1gee_A 3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKK------VGGEAIAVKGDVTVESDVINLV 76 (261)
T ss_dssp GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH------TTCEEEEEECCTTSHHHHHHHH
T ss_pred CCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHh------cCCceEEEECCCCCHHHHHHHH
Confidence 3578999999999999999999999999999999999 87777777777754 2567899999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCCc
Q psy13409 91 QEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~~ 167 (330)
+++.+.++++|+||||||..... .+.+.+++++.+++|+.+++.+++.+++.|.+++ .++||++||..+..+.
T Consensus 77 ~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~~---- 152 (261)
T 1gee_A 77 QSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPW---- 152 (261)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCC----
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhcCCC----
Confidence 99999999999999999986532 5678899999999999999999999999998876 7899999998876653
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
++...|++||+|++.++++++.|++
T Consensus 153 ----------~~~~~Y~~sK~a~~~~~~~la~e~~--------------------------------------------- 177 (261)
T 1gee_A 153 ----------PLFVHYAASKGGMKLMTETLALEYA--------------------------------------------- 177 (261)
T ss_dssp ----------TTCHHHHHHHHHHHHHHHHHHHHHG---------------------------------------------
T ss_pred ----------CCccHHHHHHHHHHHHHHHHHHHhc---------------------------------------------
Confidence 6788999999999999999999998
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
. .||+|++|+||+|+|++.....................++.+|+|+|+++++|+++ .+++++|++|...+
T Consensus 178 -----~---~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~-~~~~~~G~~~~v~g 248 (261)
T 1gee_A 178 -----P---KGIRVNNIGPGAINTPINAEKFADPEQRADVESMIPMGYIGEPEEIAAVAAWLASS-EASYVTGITLFADG 248 (261)
T ss_dssp -----G---GTCEEEEEEECSBCSGGGHHHHHSHHHHHHHHTTCTTSSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEEST
T ss_pred -----c---cCeEEEEEeeCCcCCchhhhcccChhHHHHHHhcCCCCCCcCHHHHHHHHHHHhCc-cccCCCCcEEEEcC
Confidence 5 79999999999999998764321111111111111222378999999999999965 45789999886543
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-38 Score=292.74 Aligned_cols=236 Identities=22% Similarity=0.280 Sum_probs=197.3
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
.+++||++|||||++|||++++++|+++|++|++++|+.++++++.+++... +.++.++.+|+++.++++++++
T Consensus 27 ~~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dv~d~~~v~~~~~ 100 (301)
T 3tjr_A 27 SGFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQ------GFDAHGVVCDVRHLDEMVRLAD 100 (301)
T ss_dssp CCSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHH
T ss_pred hccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCceEEEEccCCCHHHHHHHHH
Confidence 3589999999999999999999999999999999999999999988888763 6789999999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCCcc
Q psy13409 92 EILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~~~ 168 (330)
++.+.++++|+||||||+.... .+.+.+++++.+++|+.+++++++.++|.|.+++ .|+||++||.++..+.
T Consensus 101 ~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~----- 175 (301)
T 3tjr_A 101 EAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLVPN----- 175 (301)
T ss_dssp HHHHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCC-----
T ss_pred HHHHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCCC-----
Confidence 9999999999999999987543 5789999999999999999999999999998877 6899999999988775
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
++...|++||+|+++|+++|+.|++
T Consensus 176 ---------~~~~~Y~asKaa~~~~~~~la~e~~---------------------------------------------- 200 (301)
T 3tjr_A 176 ---------AGLGTYGVAKYGVVGLAETLAREVK---------------------------------------------- 200 (301)
T ss_dssp ---------TTBHHHHHHHHHHHHHHHHHHHHHG----------------------------------------------
T ss_pred ---------CCchHHHHHHHHHHHHHHHHHHHhc----------------------------------------------
Confidence 7888999999999999999999998
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCchh--------hHHHHHHhhhhhccChHHHHHHHHHhhccccccccCc
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPG--------TAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETG 320 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G 320 (330)
+ .||+||+|+||+|+|++.......... ..............+|+|+|+.++.++..+....+.|
T Consensus 201 ----~---~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pedvA~~i~~~l~~~~~~i~~g 273 (301)
T 3tjr_A 201 ----P---NGIGVSVLCPMVVETKLVSNSERIRGADYGMSATPEGAFGPLPTQDESVSADDVARLTADAILANRLYILPH 273 (301)
T ss_dssp ----G---GTEEEEEECCSCCCSSHHHHHHHHC----------------------CCCHHHHHHHHHHHHHHTCSEECCC
T ss_pred ----c---cCcEEEEEECCccccccccccccccchhhccccChhhhccccccccCCCCHHHHHHHHHHHHhcCCeEEecC
Confidence 5 799999999999999987643211000 0000011111226799999999999997765433333
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-38 Score=292.06 Aligned_cols=235 Identities=14% Similarity=0.051 Sum_probs=192.3
Q ss_pred CCCCCCEEEEEcC--CCchHHHHHHHHHHCCCEEEEEecChhHH-HHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHH
Q psy13409 12 TRLDGKTAIVTGS--NTGIGKCTANELAKRGARVIMACRSLEKA-ETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRK 88 (330)
Q Consensus 12 ~~~~gk~aLITGa--s~gIG~aia~~L~~~G~~Vil~~R~~~~l-~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~ 88 (330)
.+++||++||||| ++|||++++++|+++|++|++++|+.++. +++. +. .+.++.++.+|+++++++++
T Consensus 3 ~~l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~----~~-----~~~~~~~~~~Dv~~~~~v~~ 73 (269)
T 2h7i_A 3 GLLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRIT----DR-----LPAKAPLLELDVQNEEHLAS 73 (269)
T ss_dssp CTTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHH----TT-----SSSCCCEEECCTTCHHHHHH
T ss_pred cccCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHH----Hh-----cCCCceEEEccCCCHHHHHH
Confidence 4589999999999 99999999999999999999999987652 3332 22 24467889999999999999
Q ss_pred HHHHHHhcCC---CeeEEEEcCCCCC-------CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCC
Q psy13409 89 CAQEILDNES---AIHLLINNAGVMM-------CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLA 158 (330)
Q Consensus 89 l~~~i~~~~g---~iDvlInnAG~~~-------~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~ 158 (330)
+++++.+.++ ++|+||||||... +..+.+.++|++.+++|+.+++.+++.++|.|.+ .|+||++||..
T Consensus 74 ~~~~~~~~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~g~iv~iss~~ 151 (269)
T 2h7i_A 74 LAGRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNP--GGSIVGMDFDP 151 (269)
T ss_dssp HHHHHHHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE--EEEEEEEECCC
T ss_pred HHHHHHHHhCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhcc--CCeEEEEcCcc
Confidence 9999999988 9999999999864 2357789999999999999999999999999865 38999999976
Q ss_pred cccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCC
Q psy13409 159 HTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQT 238 (330)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (330)
+ .+. +.+..|++||+|+++|+++++.|++
T Consensus 152 ~-~~~--------------~~~~~Y~asKaa~~~l~~~la~e~~------------------------------------ 180 (269)
T 2h7i_A 152 S-RAM--------------PAYNWMTVAKSALESVNRFVAREAG------------------------------------ 180 (269)
T ss_dssp S-SCC--------------TTTHHHHHHHHHHHHHHHHHHHHHH------------------------------------
T ss_pred c-ccc--------------CchHHHHHHHHHHHHHHHHHHHHhc------------------------------------
Confidence 5 332 6778999999999999999999998
Q ss_pred CCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCC---Cch-------hhHHHH--HHhhhhhccChHHHHHHH
Q psy13409 239 PTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDS---IIP-------GTAWLY--QRVGGLFIKSPLQGAQTT 306 (330)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~---~~~-------~~~~~~--~~~~~~~~~~~~e~a~~~ 306 (330)
+ .||+||+|+||+|+|++...... ... ..+... .++++ ++.+|+|+|+++
T Consensus 181 --------------~---~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r-r~~~p~dvA~~v 242 (269)
T 2h7i_A 181 --------------K---YGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQRAPIGW-NMKDATPVAKTV 242 (269)
T ss_dssp --------------T---TTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHHHHHHHHCTTCC-CTTCCHHHHHHH
T ss_pred --------------c---cCcEEEEEecCcccchhhhccccccchhhHHHHHHHHHHhhhccCCccc-CCCCHHHHHHHH
Confidence 6 79999999999999998654311 111 001111 23331 388999999999
Q ss_pred HHhhccccccccCceecccCC
Q psy13409 307 LYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 307 ~~l~~~~~~~~~~G~~~~~~~ 327 (330)
+||+++ .++++||+.|...+
T Consensus 243 ~~L~s~-~~~~itG~~i~vdG 262 (269)
T 2h7i_A 243 CALLSD-WLPATTGDIIYADG 262 (269)
T ss_dssp HHHHSS-SCTTCCSEEEEEST
T ss_pred HHHhCc-hhccCcceEEEecC
Confidence 999965 57899999987543
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-37 Score=281.99 Aligned_cols=244 Identities=22% Similarity=0.260 Sum_probs=202.7
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.+++++|++|||||++|||++++++|+++|++|++++|+.+++++..++++.. +.++.++.+|++|++++++++
T Consensus 8 ~~~l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~~~~~~~~ 81 (260)
T 3awd_A 8 KLRLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRME------GHDVSSVVMDVTNTESVQNAV 81 (260)
T ss_dssp GGCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCceEEEEecCCCHHHHHHHH
Confidence 35689999999999999999999999999999999999998888777777652 567999999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCC---CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCc
Q psy13409 91 QEILDNESAIHLLINNAGVMM---CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~---~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~ 167 (330)
+++.+.++++|++|||||... +..+.+.+++++.+++|+.+++++++.+++.|.+++.++||++||..+..+.+
T Consensus 82 ~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~--- 158 (260)
T 3awd_A 82 RSVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSMSGLIVNR--- 158 (260)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCS---
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEecchhcccCC---
Confidence 999999999999999999765 23577889999999999999999999999999888789999999988766531
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
..+...|++||++++.++++++.|++
T Consensus 159 ---------~~~~~~Y~~sK~a~~~~~~~l~~e~~--------------------------------------------- 184 (260)
T 3awd_A 159 ---------PQQQAAYNASKAGVHQYIRSLAAEWA--------------------------------------------- 184 (260)
T ss_dssp ---------SSCCHHHHHHHHHHHHHHHHHHHHHG---------------------------------------------
T ss_pred ---------CCCccccHHHHHHHHHHHHHHHHHhh---------------------------------------------
Confidence 11237899999999999999999998
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCccc-ccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSR-HFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+ .||+|++|+||+|+|++.+ ... ...............++.+|+|+|+++++|+++ .+++++|+.|...
T Consensus 185 -----~---~gi~v~~v~pg~v~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~-~~~~~~G~~~~v~ 254 (260)
T 3awd_A 185 -----P---HGIRANAVAPTYIETTLTRFGME-KPELYDAWIAGTPMGRVGQPDEVASVVQFLASD-AASLMTGAIVNVD 254 (260)
T ss_dssp -----G---GTEEEEEEEECCBCCTTTHHHHT-CHHHHHHHHHTCTTSSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEES
T ss_pred -----h---cCeEEEEEEeeeeccchhhcccC-ChHHHHHHHhcCCcCCCCCHHHHHHHHHHHhCc-hhccCCCcEEEEC
Confidence 5 7999999999999999876 322 111111221211222378999999999999965 4568999988754
Q ss_pred C
Q psy13409 327 D 327 (330)
Q Consensus 327 ~ 327 (330)
.
T Consensus 255 g 255 (260)
T 3awd_A 255 A 255 (260)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=284.03 Aligned_cols=243 Identities=21% Similarity=0.218 Sum_probs=186.8
Q ss_pred ccCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHH
Q psy13409 8 CTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVR 87 (330)
Q Consensus 8 ~~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~ 87 (330)
....+++++|++|||||++|||++++++|+++|++|++++|+.+++++..+++... +.++.++.+|+++.++++
T Consensus 6 ~~~~~~l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~ 79 (266)
T 1xq1_A 6 QSQRWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKK------GFQVTGSVCDASLRPERE 79 (266)
T ss_dssp -CCTTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTSHHHHH
T ss_pred cCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeeEEEECCCCCHHHHH
Confidence 33456789999999999999999999999999999999999998888877777652 567899999999999999
Q ss_pred HHHHHHHhcC-CCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCC
Q psy13409 88 KCAQEILDNE-SAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDG 164 (330)
Q Consensus 88 ~l~~~i~~~~-g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~ 164 (330)
++++++.+.+ +++|+||||||.... ..+.+.++|++.+++|+.+++++++.++|.|.+++.++||++||..+..+.
T Consensus 80 ~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~- 158 (266)
T 1xq1_A 80 KLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSA- 158 (266)
T ss_dssp HHHHHHHHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC---------
T ss_pred HHHHHHHHHhCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhccCC-
Confidence 9999998888 899999999998643 256788999999999999999999999999988888999999998877664
Q ss_pred CCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccc
Q psy13409 165 SMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYC 244 (330)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
+....|++||++++.|+++++.|++
T Consensus 159 -------------~~~~~Y~~sK~a~~~~~~~la~e~~------------------------------------------ 183 (266)
T 1xq1_A 159 -------------SVGSIYSATKGALNQLARNLACEWA------------------------------------------ 183 (266)
T ss_dssp ---------------CCHHHHHHHHHHHHHHHHHHHHG------------------------------------------
T ss_pred -------------CCCchHHHHHHHHHHHHHHHHHHHh------------------------------------------
Confidence 5678999999999999999999998
Q ss_pred cccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHH--HHHhhhhhccChHHHHHHHHHhhccccccccCcee
Q psy13409 245 KNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWL--YQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLY 322 (330)
Q Consensus 245 ~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~ 322 (330)
+ .||+||+|+||+|.|++.+..... ...... ..++++ +.+|+|+|+++++|+++ .+++++|+.
T Consensus 184 --------~---~gi~v~~v~Pg~v~t~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~dva~~~~~l~~~-~~~~~~G~~ 248 (266)
T 1xq1_A 184 --------S---DGIRANAVAPAVIATPLAEAVYDD-EFKKVVISRKPLGR--FGEPEEVSSLVAFLCMP-AASYITGQT 248 (266)
T ss_dssp --------G---GTCEEEEEECCSCC----------------------------CCGGGGHHHHHHHTSG-GGTTCCSCE
T ss_pred --------H---hCcEEEEEeeCCCccchhhhhcCH-HHHHHHHhcCCCCC--CcCHHHHHHHHHHHcCc-cccCccCcE
Confidence 5 799999999999999987654211 111111 123444 78999999999999865 467899998
Q ss_pred cccCC
Q psy13409 323 YAKAD 327 (330)
Q Consensus 323 ~~~~~ 327 (330)
|...+
T Consensus 249 ~~v~g 253 (266)
T 1xq1_A 249 ICVDG 253 (266)
T ss_dssp EECCC
T ss_pred EEEcC
Confidence 86544
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-38 Score=290.74 Aligned_cols=236 Identities=24% Similarity=0.319 Sum_probs=188.6
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
..+|+ |++|||||++|||++++++|+++|++|++++|+.++++++.+++.. ..++.++.+|++|++++++++
T Consensus 17 ~~~~~-k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dv~d~~~v~~~~ 88 (272)
T 2nwq_A 17 GSHMS-STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSA-------KTRVLPLTLDVRDRAAMSAAV 88 (272)
T ss_dssp ----C-CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTT-------TSCEEEEECCTTCHHHHHHHH
T ss_pred CCCcC-cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhc-------CCcEEEEEcCCCCHHHHHHHH
Confidence 34567 9999999999999999999999999999999999888777666532 257889999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCC---CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCC-eEEEEcCCCcccCCCCC
Q psy13409 91 QEILDNESAIHLLINNAGVMMC---PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPA-RIINLSSLAHTWGDGSM 166 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~---~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g-~IV~iSS~~~~~~~~~~ 166 (330)
+.+.+.++++|+||||||.... ..+.+.++|++.+++|+.+++++++.++|.|.+++.| +||++||..+..+.
T Consensus 89 ~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS~~~~~~~--- 165 (272)
T 2nwq_A 89 DNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWPY--- 165 (272)
T ss_dssp HTCCGGGSSCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGTSCC---
T ss_pred HHHHHHhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchhccCC---
Confidence 9998999999999999998642 3678899999999999999999999999999888778 99999999887664
Q ss_pred cccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccc
Q psy13409 167 HFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKN 246 (330)
Q Consensus 167 ~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (330)
+....|++||+|+++|+++++.|++
T Consensus 166 -----------~~~~~Y~asKaa~~~l~~~la~el~-------------------------------------------- 190 (272)
T 2nwq_A 166 -----------PGSHVYGGTKAFVEQFSLNLRCDLQ-------------------------------------------- 190 (272)
T ss_dssp -----------TTCHHHHHHHHHHHHHHHHHHTTCT--------------------------------------------
T ss_pred -----------CCCchHHHHHHHHHHHHHHHHHHhC--------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred cccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceeccc
Q psy13409 247 VLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAK 325 (330)
Q Consensus 247 ~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~ 325 (330)
+ .||+||+|+||+|+|++......... +............+|+|+|+.++||++++ ++++|+.+.-
T Consensus 191 ------~---~gIrvn~v~PG~v~T~~~~~~~~~~~--~~~~~~~~~~~~~~pedvA~~v~~l~s~~--~~~~g~~i~v 256 (272)
T 2nwq_A 191 ------G---TGVRVTNLEPGLCESEFSLVRFGGDQ--ARYDKTYAGAHPIQPEDIAETIFWIMNQP--AHLNINSLEI 256 (272)
T ss_dssp ------T---SCCEEEEEEECSBC----------------------CCCCBCHHHHHHHHHHHHTSC--TTEEEEEEEE
T ss_pred ------c---cCeEEEEEEcCCCcCcchhcccccch--HHHHHhhccCCCCCHHHHHHHHHHHhCCC--ccCccceEEE
Confidence 6 79999999999999998653211100 00111111122579999999999999763 5889988753
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-38 Score=288.13 Aligned_cols=230 Identities=23% Similarity=0.257 Sum_probs=193.2
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
.++++|++|||||++|||++++++|+++|++|++++|+.++ +.++.++.+|++++++++++++
T Consensus 4 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-----------------~~~~~~~~~Dl~~~~~v~~~~~ 66 (264)
T 2dtx_A 4 SDLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG-----------------EAKYDHIECDVTNPDQVKASID 66 (264)
T ss_dssp GGGTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC-----------------SCSSEEEECCTTCHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc-----------------CCceEEEEecCCCHHHHHHHHH
Confidence 35789999999999999999999999999999999998653 2457889999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 92 EILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
++.+.++++|+||||||.... ..+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||..+..+.
T Consensus 67 ~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~------ 140 (264)
T 2dtx_A 67 HIFKEYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQASIIT------ 140 (264)
T ss_dssp HHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGTSCC------
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCchhccCC------
Confidence 999999999999999998653 257789999999999999999999999999988778999999999887664
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
++...|++||++++.|+++++.|++
T Consensus 141 --------~~~~~Y~~sK~a~~~~~~~la~e~~----------------------------------------------- 165 (264)
T 2dtx_A 141 --------KNASAYVTSKHAVIGLTKSIALDYA----------------------------------------------- 165 (264)
T ss_dssp --------TTBHHHHHHHHHHHHHHHHHHHHHT-----------------------------------------------
T ss_pred --------CCchhHHHHHHHHHHHHHHHHHHhc-----------------------------------------------
Confidence 6788999999999999999999998
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCC-----Cc----hhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCc
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDS-----II----PGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETG 320 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~-----~~----~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G 320 (330)
+ . |+||+|+||+|+|++...... .. .............++.+|+|+|++++||+++ .++++||
T Consensus 166 ---~---~-i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~dvA~~v~~l~s~-~~~~~tG 237 (264)
T 2dtx_A 166 ---P---L-LRCNAVCPATIDTPLVRKAAELEVGSDPMRIEKKISEWGHEHPMQRIGKPQEVASAVAFLASR-EASFITG 237 (264)
T ss_dssp ---T---T-SEEEEEEECSBCSHHHHHHHHHHHCSCHHHHHHHHHHHHHHSTTSSCBCHHHHHHHHHHHHSG-GGTTCCS
T ss_pred ---C---C-cEEEEEEeCCCcCcchhhhhhcccccCchhhHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCc-hhcCCCC
Confidence 5 6 999999999999998654310 11 1111111112222388999999999999965 5679999
Q ss_pred eecccCC
Q psy13409 321 LYYAKAD 327 (330)
Q Consensus 321 ~~~~~~~ 327 (330)
+.|...+
T Consensus 238 ~~i~vdG 244 (264)
T 2dtx_A 238 TCLYVDG 244 (264)
T ss_dssp CEEEEST
T ss_pred cEEEECC
Confidence 9986543
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-38 Score=284.84 Aligned_cols=230 Identities=21% Similarity=0.326 Sum_probs=188.9
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
..++++|++|||||++|||++++++|+++|++|++++|+.++++ .+..+.+|+++++++++++
T Consensus 10 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-----------------~~~~~~~D~~~~~~~~~~~ 72 (247)
T 1uzm_A 10 KPPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK-----------------GLFGVEVDVTDSDAVDRAF 72 (247)
T ss_dssp CCCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT-----------------TSEEEECCTTCHHHHHHHH
T ss_pred cccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHH-----------------HhcCeeccCCCHHHHHHHH
Confidence 34689999999999999999999999999999999999865321 1124889999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 91 QEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
+++.+.++++|++|||||.... ..+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||..+..+.
T Consensus 73 ~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~----- 147 (247)
T 1uzm_A 73 TAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGI----- 147 (247)
T ss_dssp HHHHHHHSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC---------
T ss_pred HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEECCHhhccCC-----
Confidence 9999999999999999998753 257889999999999999999999999999988778999999999887764
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
+....|++||+|++.|+++++.|++
T Consensus 148 ---------~~~~~Y~~sK~a~~~~~~~la~e~~---------------------------------------------- 172 (247)
T 1uzm_A 148 ---------GNQANYAASKAGVIGMARSIARELS---------------------------------------------- 172 (247)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHHHHHHG----------------------------------------------
T ss_pred ---------CCChhHHHHHHHHHHHHHHHHHHhh----------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
+ .||+||+|+||+|+|++...... ...+.........++.+|+|+|+.++||+++ .++++||++|....
T Consensus 173 ----~---~gi~v~~v~PG~v~t~~~~~~~~--~~~~~~~~~~p~~~~~~~~dvA~~~~~l~s~-~~~~~~G~~i~vdg 241 (247)
T 1uzm_A 173 ----K---ANVTANVVAPGYIDTDMTRALDE--RIQQGALQFIPAKRVGTPAEVAGVVSFLASE-DASYISGAVIPVDG 241 (247)
T ss_dssp ----G---GTEEEEEEEECSBCCHHHHHSCH--HHHHHHGGGCTTCSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEEST
T ss_pred ----h---cCcEEEEEEeCCCcccchhhcCH--HHHHHHHhcCCCCCCcCHHHHHHHHHHHcCc-cccCCcCCEEEECC
Confidence 5 79999999999999998765321 1111111122223378999999999999965 56799999987644
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-37 Score=280.40 Aligned_cols=240 Identities=24% Similarity=0.258 Sum_probs=199.0
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeE-EEEEccCCCHHHHHH
Q psy13409 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV-VIRQLDLSSLKSVRK 88 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v-~~i~~Dls~~~si~~ 88 (330)
+++++++|++|||||+||||++++++|+++|++|++++|+.+++++..+++ +.++ .++.+|+++++++++
T Consensus 5 ~~~~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~~D~~~~~~~~~ 75 (254)
T 2wsb_A 5 TVFRLDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQEL---------GAAVAARIVADVTDAEAMTA 75 (254)
T ss_dssp TTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---------GGGEEEEEECCTTCHHHHHH
T ss_pred cccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---------cccceeEEEEecCCHHHHHH
Confidence 345689999999999999999999999999999999999988877666554 2345 889999999999999
Q ss_pred HHHHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCC
Q psy13409 89 CAQEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSM 166 (330)
Q Consensus 89 l~~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~ 166 (330)
+++++.+ ++++|++|||||.... ..+.+.+++++.+++|+.+++.+++.++|.|.+++.++||++||..+..+.
T Consensus 76 ~~~~~~~-~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~--- 151 (254)
T 2wsb_A 76 AAAEAEA-VAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGAGAIVNLGSMSGTIVN--- 151 (254)
T ss_dssp HHHHHHH-HSCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC---
T ss_pred HHHHHHh-hCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEecchhccCC---
Confidence 9999988 8899999999998653 256788999999999999999999999999998888999999998876664
Q ss_pred cccccccccCCCcc--hhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccc
Q psy13409 167 HFEDINLEKGYSAT--GAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYC 244 (330)
Q Consensus 167 ~~~~~~~~~~~~~~--~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
+.. ..|++||++++.++++++.|++
T Consensus 152 -----------~~~~~~~Y~~sK~a~~~~~~~~~~~~~------------------------------------------ 178 (254)
T 2wsb_A 152 -----------RPQFASSYMASKGAVHQLTRALAAEWA------------------------------------------ 178 (254)
T ss_dssp -----------SSSCBHHHHHHHHHHHHHHHHHHHHHG------------------------------------------
T ss_pred -----------CCCcchHHHHHHHHHHHHHHHHHHHHh------------------------------------------
Confidence 334 7899999999999999999998
Q ss_pred cccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecc
Q psy13409 245 KNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYA 324 (330)
Q Consensus 245 ~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~ 324 (330)
+ .||++++|+||+|.|++.+...................++.+|+|+|+++++|+++ .+++++|+.|.
T Consensus 179 --------~---~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~-~~~~~~G~~~~ 246 (254)
T 2wsb_A 179 --------G---RGVRVNALAPGYVATEMTLKMRERPELFETWLDMTPMGRCGEPSEIAAAALFLASP-AASYVTGAILA 246 (254)
T ss_dssp --------G---GTEEEEEEEECCBCSHHHHHHHTCHHHHHHHHHTSTTSSCBCHHHHHHHHHHHHSG-GGTTCCSCEEE
T ss_pred --------h---cCeEEEEEEecccCchhhhccccChHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCc-ccccccCCEEE
Confidence 5 79999999999999998765432211112222212222378999999999999965 45789999987
Q ss_pred cCC
Q psy13409 325 KAD 327 (330)
Q Consensus 325 ~~~ 327 (330)
...
T Consensus 247 v~g 249 (254)
T 2wsb_A 247 VDG 249 (254)
T ss_dssp EST
T ss_pred ECC
Confidence 543
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-38 Score=282.16 Aligned_cols=223 Identities=16% Similarity=0.142 Sum_probs=181.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
|++|||||++|||++++++|+++|++|++++|+.+++++..+++ +.++.++.+|+++.++++++++++.+.
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~D~~~~~~v~~~~~~~~~~ 72 (230)
T 3guy_A 2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCL---------SNNVGYRARDLASHQEVEQLFEQLDSI 72 (230)
T ss_dssp -CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTC---------SSCCCEEECCTTCHHHHHHHHHSCSSC
T ss_pred CEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH---------hhccCeEeecCCCHHHHHHHHHHHhhc
Confidence 68999999999999999999999999999999998877665443 457889999999999999998876554
Q ss_pred CCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccc
Q psy13409 97 ESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLE 174 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~ 174 (330)
.|++|||||..... .+.+.++|++.+++|+.+++.+++.++|.|.+++ ++||++||..+..+.
T Consensus 73 ---~d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~iv~isS~~~~~~~----------- 137 (230)
T 3guy_A 73 ---PSTVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQP-VNVVMIMSTAAQQPK----------- 137 (230)
T ss_dssp ---CSEEEECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-CEEEEECCGGGTSCC-----------
T ss_pred ---CCEEEEeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEeecccCCCC-----------
Confidence 39999999987543 5789999999999999999999999999998765 599999999887774
Q ss_pred cCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCCC
Q psy13409 175 KGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGA 254 (330)
Q Consensus 175 ~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (330)
+....|++||+|+++|+++++.|++ +
T Consensus 138 ---~~~~~Y~asKaa~~~~~~~la~e~~--------------------------------------------------~- 163 (230)
T 3guy_A 138 ---AQESTYCAVKWAVKGLIESVRLELK--------------------------------------------------G- 163 (230)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHTT--------------------------------------------------T-
T ss_pred ---CCCchhHHHHHHHHHHHHHHHHHHH--------------------------------------------------h-
Confidence 6788999999999999999999998 6
Q ss_pred CCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCCCC
Q psy13409 255 NITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKADLP 329 (330)
Q Consensus 255 ~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~~~ 329 (330)
.||+||+|+||+|+|++.+...... +.++ +.+|+|+|+.++|+++++..+++||+.+.....+
T Consensus 164 --~gi~v~~v~PG~v~t~~~~~~~~~~--------~~~~--~~~~~dvA~~i~~l~~~~~~~~itg~~~~~~~~~ 226 (230)
T 3guy_A 164 --KPMKIIAVYPGGMATEFWETSGKSL--------DTSS--FMSAEDAALMIHGALANIGNGYVSDITVNREGHH 226 (230)
T ss_dssp --SSCEEEEEEECCC--------------------------CCCHHHHHHHHHHHCCEETTEEEEEEEEEC----
T ss_pred --cCeEEEEEECCcccChHHHhcCCCC--------Cccc--CCCHHHHHHHHHHHHhCcCCCCccceeecCCCCC
Confidence 7999999999999999887654321 2333 7899999999999998788899999999876653
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=282.44 Aligned_cols=233 Identities=24% Similarity=0.283 Sum_probs=188.7
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
.+++||++|||||++|||++++++|+++|++|++++|+.+++++.. + -.++.++.+|+++++++++
T Consensus 2 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~-~----------~~~~~~~~~D~~~~~~~~~--- 67 (246)
T 2ag5_A 2 GRLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELE-K----------YPGIQTRVLDVTKKKQIDQ--- 67 (246)
T ss_dssp CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGG-G----------STTEEEEECCTTCHHHHHH---
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-h----------ccCceEEEeeCCCHHHHHH---
Confidence 3578999999999999999999999999999999999987654332 1 1267889999999999873
Q ss_pred HHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 92 EILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
+.+.++++|++|||||..... .+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||..+..+.
T Consensus 68 -~~~~~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------ 140 (246)
T 2ag5_A 68 -FANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKG------ 140 (246)
T ss_dssp -HHHHCSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBC------
T ss_pred -HHHHhCCCCEEEECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechHhCcCC------
Confidence 445578999999999986532 56788999999999999999999999999988888999999998876653
Q ss_pred ccccccCCC-cchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 170 DINLEKGYS-ATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 170 ~~~~~~~~~-~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
+ +...|++||++++.|+++++.|++
T Consensus 141 --------~~~~~~Y~~sK~a~~~~~~~la~e~~---------------------------------------------- 166 (246)
T 2ag5_A 141 --------VVNRCVYSTTKAAVIGLTKSVAADFI---------------------------------------------- 166 (246)
T ss_dssp --------CTTBHHHHHHHHHHHHHHHHHHHHHG----------------------------------------------
T ss_pred --------CCCCccHHHHHHHHHHHHHHHHHHhh----------------------------------------------
Confidence 4 678999999999999999999998
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCC----CchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecc
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDS----IIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYA 324 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~ 324 (330)
+ .||+||+|+||+|+|++...... .....+.........++.+|+|+|++++||+++ .++++||+.|.
T Consensus 167 ----~---~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~v~~l~s~-~~~~~tG~~i~ 238 (246)
T 2ag5_A 167 ----Q---QGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQKTGRFATAEEIAMLCVYLASD-ESAYVTGNPVI 238 (246)
T ss_dssp ----G---GTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTCTTSSCEEHHHHHHHHHHHHSG-GGTTCCSCEEE
T ss_pred ----h---cCcEEEEEeeCcCcCcchhhhhhcccCcHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCc-cccCCCCCEEE
Confidence 5 79999999999999998654210 011111111111222378999999999999965 56799999986
Q ss_pred cCC
Q psy13409 325 KAD 327 (330)
Q Consensus 325 ~~~ 327 (330)
...
T Consensus 239 vdg 241 (246)
T 2ag5_A 239 IDG 241 (246)
T ss_dssp ECT
T ss_pred ECC
Confidence 543
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-37 Score=279.11 Aligned_cols=240 Identities=23% Similarity=0.264 Sum_probs=199.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
++|++|||||++|||++++++|+++|++|++++|+.+++++..+++... .+.++.++.+|++++++++++++++.
T Consensus 1 ~~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (250)
T 2cfc_A 1 MSRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHA-----YADKVLRVRADVADEGDVNAAIAATM 75 (250)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTT-----TGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh-----cCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999998887776665221 24578999999999999999999999
Q ss_pred hcCCCeeEEEEcCCCCCC-----CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 95 DNESAIHLLINNAGVMMC-----PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~-----~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
+.++++|++|||||.... ..+.+.+++++.+++|+.+++.+++.+++.|.+++.++||++||..+..+.
T Consensus 76 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~------ 149 (250)
T 2cfc_A 76 EQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLVAF------ 149 (250)
T ss_dssp HHHSCCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC------
T ss_pred HHhCCCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccCC------
Confidence 999999999999997643 245678999999999999999999999999988878999999998877664
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
++...|++||++++.++++++.|+.
T Consensus 150 --------~~~~~Y~~sK~a~~~~~~~l~~e~~----------------------------------------------- 174 (250)
T 2cfc_A 150 --------PGRSAYTTSKGAVLQLTKSVAVDYA----------------------------------------------- 174 (250)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHHG-----------------------------------------------
T ss_pred --------CCchhHHHHHHHHHHHHHHHHHHhc-----------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
+ .||+|++|+||+|+|++.....................++.+|+|+|+.+++|+++ .+.+++|+.|...+
T Consensus 175 ---~---~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~-~~~~~~G~~~~v~g 245 (250)
T 2cfc_A 175 ---G---SGIRCNAVCPGMIETPMTQWRLDQPELRDQVLARIPQKEIGTAAQVADAVMFLAGE-DATYVNGAALVMDG 245 (250)
T ss_dssp ---G---GTEEEEEEEECSBCSTTTHHHHTSHHHHHHHHTTCTTCSCBCHHHHHHHHHHHHST-TCTTCCSCEEEEST
T ss_pred ---c---cCeEEEEEEeCcCccCccccccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCc-hhhcccCCEEEECC
Confidence 5 79999999999999998764211111122222212222378999999999999966 45789999987543
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-37 Score=279.71 Aligned_cols=242 Identities=29% Similarity=0.354 Sum_probs=203.6
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.+++++|+++||||+||||++++++|+++|++|++++|+.+++++..+++.... +.++.++.+|++|++++++++
T Consensus 2 ~~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~ 76 (248)
T 2pnf_A 2 EIKLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKY-----GVKAHGVEMNLLSEESINKAF 76 (248)
T ss_dssp CCCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH-----CCCEEEEECCTTCHHHHHHHH
T ss_pred ccccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhc-----CCceEEEEccCCCHHHHHHHH
Confidence 356899999999999999999999999999999999999988887777765421 457899999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 91 QEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
+++.+.++++|++|||||..... .+.+.+++++.+++|+.+++++++.+++.|.+++.++||++||..+..+.
T Consensus 77 ~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~----- 151 (248)
T 2pnf_A 77 EEIYNLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGFTGN----- 151 (248)
T ss_dssp HHHHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHTCEEEEEECCHHHHHCC-----
T ss_pred HHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhcCCC-----
Confidence 99999999999999999986532 56788999999999999999999999999988878999999998777664
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
++...|+++|++++.++++++.|+.
T Consensus 152 ---------~~~~~Y~~sK~a~~~~~~~la~e~~---------------------------------------------- 176 (248)
T 2pnf_A 152 ---------VGQVNYSTTKAGLIGFTKSLAKELA---------------------------------------------- 176 (248)
T ss_dssp ---------TTCHHHHHHHHHHHHHHHHHHHHHG----------------------------------------------
T ss_pred ---------CCCchHHHHHHHHHHHHHHHHHHhc----------------------------------------------
Confidence 5678999999999999999999998
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
. .||++++|+||+|+|++...... .............++.+|+|+|+++++++++ ...+++|+.|...+
T Consensus 177 ----~---~~i~v~~v~Pg~v~t~~~~~~~~--~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~-~~~~~~G~~~~v~g 245 (248)
T 2pnf_A 177 ----P---RNVLVNAVAPGFIETDMTAVLSE--EIKQKYKEQIPLGRFGSPEEVANVVLFLCSE-LASYITGEVIHVNG 245 (248)
T ss_dssp ----G---GTEEEEEEEECSBCCGGGGGSCH--HHHHHHHHTCTTSSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEEST
T ss_pred ----c---cCeEEEEEEeceecCchhhhccH--HHHHHHHhcCCCCCccCHHHHHHHHHHHhCc-hhhcCCCcEEEeCC
Confidence 5 79999999999999998765321 1111111112222378999999999999965 45689999886543
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-37 Score=279.73 Aligned_cols=237 Identities=23% Similarity=0.311 Sum_probs=200.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEE-ecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMA-CRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~-~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
||++|||||+||||++++++|+++|++|+++ +|+.+.++++.++++.. +.++.++.+|++++++++++++++.
T Consensus 1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~ 74 (244)
T 1edo_A 1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAY------GGQAITFGGDVSKEADVEAMMKTAI 74 (244)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH------TCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc------CCcEEEEeCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999999999999984 89988888777777653 5678999999999999999999999
Q ss_pred hcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccc
Q psy13409 95 DNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDIN 172 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~ 172 (330)
+.++++|++|||||..... .+.+.+++++.+++|+.+++++++.+++.|.+++.++||++||..+..+.
T Consensus 75 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~--------- 145 (244)
T 1edo_A 75 DAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGN--------- 145 (244)
T ss_dssp HHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC---------
T ss_pred HHcCCCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECChhhcCCC---------
Confidence 9999999999999987542 56788999999999999999999999999988888999999999877764
Q ss_pred cccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCC
Q psy13409 173 LEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPP 252 (330)
Q Consensus 173 ~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (330)
++...|++||++++.++++++.|+.
T Consensus 146 -----~~~~~Y~~sK~a~~~~~~~la~e~~-------------------------------------------------- 170 (244)
T 1edo_A 146 -----IGQANYAAAKAGVIGFSKTAAREGA-------------------------------------------------- 170 (244)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHHHH--------------------------------------------------
T ss_pred -----CCCccchhhHHHHHHHHHHHHHHhh--------------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred CCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 253 GANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 253 ~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
. .||++++|+||+|+|++...... .............++.+|+|+|+++++|+.++.+.+++|++|...+
T Consensus 171 ~---~gi~v~~v~Pg~v~t~~~~~~~~--~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~~G~~~~v~g 240 (244)
T 1edo_A 171 S---RNINVNVVCPGFIASDMTAKLGE--DMEKKILGTIPLGRTGQPENVAGLVEFLALSPAASYITGQAFTIDG 240 (244)
T ss_dssp T---TTEEEEEEEECSBCSHHHHTTCH--HHHHHHHTSCTTCSCBCHHHHHHHHHHHHHCSGGGGCCSCEEEEST
T ss_pred h---cCCEEEEEeeCccccchhhhcCh--HHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCccCCcCCCEEEeCC
Confidence 5 79999999999999998765421 1111111112222378999999999999856567799999886543
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-37 Score=288.54 Aligned_cols=234 Identities=21% Similarity=0.253 Sum_probs=189.6
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
+.+++||++|||||++|||++++++|+++|++|++++|+.+++++..+++.... .+.++.++.+|+++++++++++
T Consensus 3 m~~l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~~Dl~~~~~v~~~~ 78 (319)
T 3ioy_A 3 LKDFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEG----SGPEVMGVQLDVASREGFKMAA 78 (319)
T ss_dssp CCCCTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT----CGGGEEEEECCTTCHHHHHHHH
T ss_pred ccCCCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC----CCCeEEEEECCCCCHHHHHHHH
Confidence 457899999999999999999999999999999999999999999888887642 2348999999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhh------CCCeEEEEcCCCcccC
Q psy13409 91 QEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKS------APARIINLSSLAHTWG 162 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~------~~g~IV~iSS~~~~~~ 162 (330)
+.+.+.++++|+||||||+... ..+.+.++++.++++|+.|++++++.++|.|.++ +.|+||++||.++..+
T Consensus 79 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~~~ 158 (319)
T 3ioy_A 79 DEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLA 158 (319)
T ss_dssp HHHHHHTCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGTCC
T ss_pred HHHHHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecccccccC
Confidence 9999999999999999998653 3678899999999999999999999999999876 5799999999998877
Q ss_pred CCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcc
Q psy13409 163 DGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNH 242 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (330)
. +....|++||+|+++|+++++.|+.
T Consensus 159 ~--------------~~~~~Y~aSKaal~~~~~~la~e~~---------------------------------------- 184 (319)
T 3ioy_A 159 A--------------GSPGIYNTTKFAVRGLSESLHYSLL---------------------------------------- 184 (319)
T ss_dssp C--------------SSSHHHHHHHHHHHHHHHHHHHHHG----------------------------------------
T ss_pred C--------------CCCHHHHHHHHHHHHHHHHHHHHhh----------------------------------------
Confidence 5 6778999999999999999999998
Q ss_pred cccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHH--------HHHHhh--hhhccChHHHHHHHHHhhcc
Q psy13409 243 YCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAW--------LYQRVG--GLFIKSPLQGAQTTLYCALD 312 (330)
Q Consensus 243 ~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~--------~~~~~~--~~~~~~~~e~a~~~~~l~~~ 312 (330)
+ .||+|++|+||+|+|++............. ....+. .....+|+++|+.++.++..
T Consensus 185 ----------~---~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~vA~~~~~al~~ 251 (319)
T 3ioy_A 185 ----------K---YEIGVSVLCPGLVKSYIYASDDIRPDALKGEVKPVDKTAVERLAGVHEFGMEPDVIGARVIEAMKA 251 (319)
T ss_dssp ----------G---GTCEEEEECCCCBC-----------------------------CCGGGSSBCHHHHHHHHHHHHHT
T ss_pred ----------h---cCCEEEEEEcCeEccCcccccccCchhhcccccchhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHc
Confidence 5 799999999999999987654322111000 001110 01126999999999999877
Q ss_pred ccc
Q psy13409 313 KKC 315 (330)
Q Consensus 313 ~~~ 315 (330)
+..
T Consensus 252 ~~~ 254 (319)
T 3ioy_A 252 NRL 254 (319)
T ss_dssp TCS
T ss_pred CCC
Confidence 653
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-37 Score=279.38 Aligned_cols=231 Identities=23% Similarity=0.254 Sum_probs=190.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
+|++|||||++|||++++++|+++|++|++++|+.+++ .+++ + +.++.+|+++ ++++++++++.+
T Consensus 2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~~---~~~~---------~--~~~~~~D~~~-~~~~~~~~~~~~ 66 (239)
T 2ekp_A 2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEA---AQSL---------G--AVPLPTDLEK-DDPKGLVKRALE 66 (239)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHH---HHHH---------T--CEEEECCTTT-SCHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH---HHhh---------C--cEEEecCCch-HHHHHHHHHHHH
Confidence 68999999999999999999999999999999997652 2222 1 6788999999 999999999999
Q ss_pred cCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccccc
Q psy13409 96 NESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINL 173 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~ 173 (330)
.++++|++|||||.... ..+.+.++|++.+++|+.+++.+++.++|.|.+++.|+||++||..+..+.
T Consensus 67 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 136 (239)
T 2ekp_A 67 ALGGLHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWGRVLFIGSVTTFTAG---------- 136 (239)
T ss_dssp HHTSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC----------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhccCC----------
Confidence 89999999999998643 357789999999999999999999999999998888999999998876552
Q ss_pred ccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCC
Q psy13409 174 EKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPG 253 (330)
Q Consensus 174 ~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (330)
..++...|++||++++.|+++++.|++ +
T Consensus 137 --~~~~~~~Y~~sK~a~~~~~~~la~e~~--------------------------------------------------~ 164 (239)
T 2ekp_A 137 --GPVPIPAYTTAKTALLGLTRALAKEWA--------------------------------------------------R 164 (239)
T ss_dssp --TTSCCHHHHHHHHHHHHHHHHHHHHHG--------------------------------------------------G
T ss_pred --CCCCCccHHHHHHHHHHHHHHHHHHhh--------------------------------------------------h
Confidence 125678999999999999999999998 5
Q ss_pred CCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 254 ANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 254 ~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
.||+||+|+||+|+|++...........+.........++.+|+|+|+.++||+++ .++++||+.+...+
T Consensus 165 ---~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~~~~l~s~-~~~~~tG~~~~vdg 234 (239)
T 2ekp_A 165 ---LGIRVNLLCPGYVETEFTLPLRQNPELYEPITARIPMGRWARPEEIARVAAVLCGD-EAEYLTGQAVAVDG 234 (239)
T ss_dssp ---GTEEEEEEEECSBCSGGGHHHHTCHHHHHHHHTTCTTSSCBCHHHHHHHHHHHTSG-GGTTCCSCEEEEST
T ss_pred ---cCcEEEEEEeCCccCchhhccccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCc-hhcCCCCCEEEECC
Confidence 79999999999999998764321111111121111222378999999999999965 56799999987543
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-37 Score=283.88 Aligned_cols=240 Identities=25% Similarity=0.331 Sum_probs=200.4
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
.++++|++|||||+||||+++++.|+++|++|++++|+.++++++.++++. .+.++.++.+|++|+++++++++
T Consensus 40 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~------~~~~~~~~~~Dl~d~~~v~~~~~ 113 (285)
T 2c07_A 40 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKS------FGYESSGYAGDVSKKEEISEVIN 113 (285)
T ss_dssp CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHT------TTCCEEEEECCTTCHHHHHHHHH
T ss_pred ccCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHh------cCCceeEEECCCCCHHHHHHHHH
Confidence 468899999999999999999999999999999999998888877777754 25678999999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 92 EILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
++.+.++++|+||||||.... ..+.+.+++++.+++|+.+++++++.+++.|.+++.++||++||..+..+.
T Consensus 114 ~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~------ 187 (285)
T 2c07_A 114 KILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGN------ 187 (285)
T ss_dssp HHHHHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC------
T ss_pred HHHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccCC------
Confidence 999999999999999998753 256788999999999999999999999999988878999999999887764
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
++...|++||++++.++++++.|++
T Consensus 188 --------~~~~~Y~asK~a~~~~~~~la~e~~----------------------------------------------- 212 (285)
T 2c07_A 188 --------VGQANYSSSKAGVIGFTKSLAKELA----------------------------------------------- 212 (285)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHHG-----------------------------------------------
T ss_pred --------CCCchHHHHHHHHHHHHHHHHHHHH-----------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
+ .||+||+|+||+|+|++...... ...+.........++.+|+|+|+++++|+++ .+++++|++|...+
T Consensus 213 ---~---~gi~v~~v~Pg~v~t~~~~~~~~--~~~~~~~~~~~~~~~~~~~dvA~~~~~l~~~-~~~~~~G~~i~v~g 281 (285)
T 2c07_A 213 ---S---RNITVNAIAPGFISSDMTDKISE--QIKKNIISNIPAGRMGTPEEVANLACFLSSD-KSGYINGRVFVIDG 281 (285)
T ss_dssp ---G---GTEEEEEEEECSBCC-----CCH--HHHHHHHTTCTTSSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEEST
T ss_pred ---H---hCcEEEEEEeCcEecCchhhcCH--HHHHHHHhhCCCCCCCCHHHHHHHHHHHhCC-CcCCCCCCEEEeCC
Confidence 5 79999999999999998765321 1112222222222378999999999999965 45789999987543
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=280.67 Aligned_cols=239 Identities=26% Similarity=0.373 Sum_probs=185.1
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEE-ecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMA-CRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~-~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
++++|++|||||+||||++++++|+++|++|+++ .|+.+.+++..+++.. .+.++.++.+|++|+++++++++
T Consensus 2 ~l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~------~~~~~~~~~~D~~~~~~~~~~~~ 75 (247)
T 2hq1_A 2 QLKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKA------AGINVVVAKGDVKNPEDVENMVK 75 (247)
T ss_dssp TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHH------TTCCEEEEESCTTSHHHHHHHHH
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHh------cCCcEEEEECCCCCHHHHHHHHH
Confidence 5789999999999999999999999999999998 6777777777776655 25678999999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 92 EILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
++.+.++++|++|||||..... .+.+.+++++.+++|+.+++++++.+++.|.+++.++||++||..+..+.
T Consensus 76 ~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~------ 149 (247)
T 2hq1_A 76 TAMDAFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSIAGIIGN------ 149 (247)
T ss_dssp HHHHHHSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC-------------
T ss_pred HHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccCC------
Confidence 9999999999999999986432 46678889999999999999999999999988878999999999887774
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
+....|++||++++.++++++.|++
T Consensus 150 --------~~~~~Y~~sK~a~~~~~~~la~e~~----------------------------------------------- 174 (247)
T 2hq1_A 150 --------AGQANYAASKAGLIGFTKSIAKEFA----------------------------------------------- 174 (247)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHG-----------------------------------------------
T ss_pred --------CCCcHhHHHHHHHHHHHHHHHHHHH-----------------------------------------------
Confidence 5678999999999999999999998
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
. .||++|+|+||+++|++...... .............++.+|+|+|+++++++++ .+++++|+.|....
T Consensus 175 ---~---~gi~v~~v~Pg~v~t~~~~~~~~--~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~-~~~~~~G~~~~v~g 243 (247)
T 2hq1_A 175 ---A---KGIYCNAVAPGIIKTDMTDVLPD--KVKEMYLNNIPLKRFGTPEEVANVVGFLASD-DSNYITGQVINIDG 243 (247)
T ss_dssp ---G---GTEEEEEEEECSBCCHHHHTSCH--HHHHHHHTTSTTSSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEEST
T ss_pred ---H---cCcEEEEEEEEEEeccchhhcch--HHHHHHHhhCCCCCCCCHHHHHHHHHHHcCc-ccccccCcEEEeCC
Confidence 5 79999999999999998765321 1111111111222378999999999999865 45689999887543
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=289.57 Aligned_cols=243 Identities=42% Similarity=0.616 Sum_probs=188.3
Q ss_pred cCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHH
Q psy13409 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRK 88 (330)
Q Consensus 9 ~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~ 88 (330)
..+++++||++|||||++|||++++++|+++|++|++++|+.+++++..+++ +.++.++.+|++|++++++
T Consensus 9 ~~~~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~Dl~d~~~v~~ 79 (291)
T 3rd5_A 9 ADLPSFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTM---------AGQVEVRELDLQDLSSVRR 79 (291)
T ss_dssp GGCCCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTS---------SSEEEEEECCTTCHHHHHH
T ss_pred hhccCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---------cCCeeEEEcCCCCHHHHHH
Confidence 3456799999999999999999999999999999999999998776654432 5689999999999999998
Q ss_pred HHHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 89 CAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 89 l~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
+++++ +++|+||||||+..+..+.+.++|+.++++|+.+++++++.++|.|.+ +||++||.++..+... .
T Consensus 80 ~~~~~----~~iD~lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~----riv~isS~~~~~~~~~--~ 149 (291)
T 3rd5_A 80 FADGV----SGADVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTD----RVVTVSSMAHWPGRIN--L 149 (291)
T ss_dssp HHHTC----CCEEEEEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEE----EEEEECCGGGTTCCCC--S
T ss_pred HHHhc----CCCCEEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh----heeEeechhhccCCCC--c
Confidence 88765 789999999999876677888999999999999999999999998854 8999999988766321 1
Q ss_pred ccccc-ccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 169 EDINL-EKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 169 ~~~~~-~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
.+... ..++++...|++||+|+++|+++++.|++..
T Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~------------------------------------------- 186 (291)
T 3rd5_A 150 EDLNWRSRRYSPWLAYSQSKLANLLFTSELQRRLTAA------------------------------------------- 186 (291)
T ss_dssp SCTTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHT-------------------------------------------
T ss_pred ccccccccCCCCcchHHHHHHHHHHHHHHHHHHHhhC-------------------------------------------
Confidence 11111 1345778899999999999999999999821
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+ .+|+||+|+||+|+|++.+....... ......+.++ ...+|+|+|++++||+++ +++||++|...
T Consensus 187 -----g---~~i~v~~v~PG~v~T~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~A~~~~~l~~~---~~~~G~~~~vd 252 (291)
T 3rd5_A 187 -----G---SPLRALAAHPGYSHTNLQGASGRKLG-DALMSAATRV-VATDADFGARQTLYAASQ---DLPGDSFVGPR 252 (291)
T ss_dssp -----T---CCCEEEEECCSGGGSCC----------------------CHHHHHHHHHHHHHHHS---CCCTTCEEEET
T ss_pred -----C---CCEEEEEeeCCCCccccccccchHHH-HHHHHHHHHH-HhCCHHHHHHHHHHHHcC---CCCCCceeCCc
Confidence 1 34999999999999999876532211 1111123333 234599999999999977 38999999753
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-37 Score=281.06 Aligned_cols=248 Identities=23% Similarity=0.244 Sum_probs=201.0
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
+++++|++|||||++|||++++++|+++|++|++++|+.++..+..+++.+.. +.++.++.+|++|+++++++++
T Consensus 10 ~~~~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~Dl~~~~~~~~~~~ 84 (265)
T 1h5q_A 10 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEF-----GVKTKAYQCDVSNTDIVTKTIQ 84 (265)
T ss_dssp ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHH-----TCCEEEEECCTTCHHHHHHHHH
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHHHHHHhc-----CCeeEEEEeeCCCHHHHHHHHH
Confidence 46899999999999999999999999999999999998766666566655432 5678999999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCCcc
Q psy13409 92 EILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~~~ 168 (330)
++.+.++++|++|||||..... .+.+.+++++.+++|+.+++++++.+++.|.+++ .++||++||..+..+.+..
T Consensus 85 ~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~-- 162 (265)
T 1h5q_A 85 QIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSS-- 162 (265)
T ss_dssp HHHHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEE--
T ss_pred HHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchhhcccccc--
Confidence 9999999999999999986533 5678899999999999999999999999998776 4899999998876653110
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
..+..+...|++||++++.++++++.|++
T Consensus 163 -----~~~~~~~~~Y~~sK~a~~~~~~~la~e~~---------------------------------------------- 191 (265)
T 1h5q_A 163 -----LNGSLTQVFYNSSKAACSNLVKGLAAEWA---------------------------------------------- 191 (265)
T ss_dssp -----TTEECSCHHHHHHHHHHHHHHHHHHHHHG----------------------------------------------
T ss_pred -----ccccccccccHHHHHHHHHHHHHHHHHHH----------------------------------------------
Confidence 01123478899999999999999999998
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
. .||+|++|+||+|+|++...... ...+.........++.+|+|+|+++++|+++ .+++++|+.|.-.+
T Consensus 192 ----~---~gi~v~~v~Pg~v~t~~~~~~~~--~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~-~~~~~~G~~~~v~g 260 (265)
T 1h5q_A 192 ----S---AGIRVNALSPGYVNTDQTAHMDK--KIRDHQASNIPLNRFAQPEEMTGQAILLLSD-HATYMTGGEYFIDG 260 (265)
T ss_dssp ----G---GTEEEEEEEECSBCCGGGGGSCH--HHHHHHHHTCTTSSCBCGGGGHHHHHHHHSG-GGTTCCSCEEEECT
T ss_pred ----h---cCcEEEEEecCccccccccccch--hHHHHHHhcCcccCCCCHHHHHHHHHhhccC-chhcCcCcEEEecC
Confidence 5 79999999999999998776421 1111111112222378999999999999966 45789999886543
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-37 Score=281.24 Aligned_cols=235 Identities=20% Similarity=0.243 Sum_probs=193.0
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
+++++|++|||||++|||++++++|+++|++|++++|+.+++++..+++ +.++.++.+|++++++++++++
T Consensus 8 ~~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~D~~~~~~v~~~~~ 78 (265)
T 2o23_A 8 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL---------GNNCVFAPADVTSEKDVQTALA 78 (265)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHH---------CTTEEEEECCTTCHHHHHHHHH
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHh---------CCceEEEEcCCCCHHHHHHHHH
Confidence 4689999999999999999999999999999999999988777665554 3568899999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCCC--C------CCChhhHHHhHHHHHHHHHHHHHHHHHHHhhh------CCCeEEEEcCC
Q psy13409 92 EILDNESAIHLLINNAGVMMCP--R------QLTEDGYELQFATNHLGHYLFTLLLLPRIIKS------APARIINLSSL 157 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~--~------~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~------~~g~IV~iSS~ 157 (330)
++.+.++++|+||||||..... . +.+.++|++.+++|+.+++.+++.+++.|.++ +.++||++||.
T Consensus 79 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS~ 158 (265)
T 2o23_A 79 LAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASV 158 (265)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCT
T ss_pred HHHHHCCCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCCh
Confidence 9999999999999999986532 1 36888999999999999999999999999887 57899999999
Q ss_pred CcccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCC
Q psy13409 158 AHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQ 237 (330)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (330)
.+..+. ++...|++||++++.|+++++.|++
T Consensus 159 ~~~~~~--------------~~~~~Y~~sK~a~~~~~~~la~e~~----------------------------------- 189 (265)
T 2o23_A 159 AAFEGQ--------------VGQAAYSASKGGIVGMTLPIARDLA----------------------------------- 189 (265)
T ss_dssp HHHHCC--------------TTCHHHHHHHHHHHHHHHHHHHHHG-----------------------------------
T ss_pred hhcCCC--------------CCCchhHHHHHHHHHHHHHHHHHHh-----------------------------------
Confidence 877664 6778999999999999999999998
Q ss_pred CCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhh-hhccChHHHHHHHHHhhcccccc
Q psy13409 238 TPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGG-LFIKSPLQGAQTTLYCALDKKCE 316 (330)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~a~~~~~l~~~~~~~ 316 (330)
+ .||+||+|+||+|+|++.+...... .+........ .++.+|+|+|+.+++|++ .+
T Consensus 190 ---------------~---~gi~v~~v~Pg~v~t~~~~~~~~~~--~~~~~~~~~~~~~~~~~~dva~~~~~l~~---~~ 246 (265)
T 2o23_A 190 ---------------P---IGIRVMTIAPGLFGTPLLTSLPEKV--CNFLASQVPFPSRLGDPAEYAHLVQAIIE---NP 246 (265)
T ss_dssp ---------------G---GTEEEEEEEECCBCCC------------CHHHHTCSSSCSCBCHHHHHHHHHHHHH---CT
T ss_pred ---------------h---cCcEEEEEEeccccCccccccCHHH--HHHHHHcCCCcCCCCCHHHHHHHHHHHhh---cC
Confidence 5 7999999999999999876543211 1111111111 237899999999999984 35
Q ss_pred ccCceecccCC
Q psy13409 317 RETGLYYAKAD 327 (330)
Q Consensus 317 ~~~G~~~~~~~ 327 (330)
+++|+.|...+
T Consensus 247 ~~~G~~i~vdg 257 (265)
T 2o23_A 247 FLNGEVIRLDG 257 (265)
T ss_dssp TCCSCEEEEST
T ss_pred ccCceEEEECC
Confidence 89999886543
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-37 Score=281.66 Aligned_cols=244 Identities=22% Similarity=0.266 Sum_probs=195.6
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcc-cCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKD-VKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~-~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.++++|++|||||++|||++++++|+++|++|++++|+.+.+++..+++...... .....++.++.+|+++++++++++
T Consensus 3 ~~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 82 (264)
T 2pd6_A 3 NRLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLL 82 (264)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHH
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHH
Confidence 4689999999999999999999999999999999999988877766554332100 001157889999999999999999
Q ss_pred HHHHhcCCCe-eEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCC
Q psy13409 91 QEILDNESAI-HLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSM 166 (330)
Q Consensus 91 ~~i~~~~g~i-DvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~ 166 (330)
+.+.+.++++ |++|||||..... .+.+.++++..+++|+.+++++++.+++.|.+++ .|+||++||..+..+.
T Consensus 83 ~~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~--- 159 (264)
T 2pd6_A 83 EQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGN--- 159 (264)
T ss_dssp HHHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHCC---
T ss_pred HHHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhhccCC---
Confidence 9999999998 9999999987532 5678899999999999999999999999998876 6899999998877764
Q ss_pred cccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccc
Q psy13409 167 HFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKN 246 (330)
Q Consensus 167 ~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (330)
++...|++||++++.|+++++.|++
T Consensus 160 -----------~~~~~Y~~sK~a~~~~~~~la~e~~-------------------------------------------- 184 (264)
T 2pd6_A 160 -----------VGQTNYAASKAGVIGLTQTAARELG-------------------------------------------- 184 (264)
T ss_dssp -----------TTBHHHHHHHHHHHHHHHHHHHHHG--------------------------------------------
T ss_pred -----------CCChhhHHHHHHHHHHHHHHHHHhh--------------------------------------------
Confidence 6788999999999999999999998
Q ss_pred cccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCceecc
Q psy13409 247 VLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYA 324 (330)
Q Consensus 247 ~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~ 324 (330)
. .||++++|+||+|.|++....... ..+... .++++ +.+|+|+|+.+++++++ .+.+++|+.+.
T Consensus 185 ------~---~gi~v~~v~Pg~v~t~~~~~~~~~--~~~~~~~~~~~~~--~~~~~dva~~~~~l~~~-~~~~~~G~~~~ 250 (264)
T 2pd6_A 185 ------R---HGIRCNSVLPGFIATPMTQKVPQK--VVDKITEMIPMGH--LGDPEDVADVVAFLASE-DSGYITGTSVE 250 (264)
T ss_dssp ------G---GTEEEEEEEECSBCSCC------------CTGGGCTTCS--CBCHHHHHHHHHHHHSG-GGTTCCSCEEE
T ss_pred ------h---cCeEEEEEeeecccccchhhcCHH--HHHHHHHhCCCCC--CCCHHHHHHHHHHHcCC-cccCCCCCEEE
Confidence 5 799999999999999987643221 011111 12333 78999999999999966 45689999887
Q ss_pred cCC
Q psy13409 325 KAD 327 (330)
Q Consensus 325 ~~~ 327 (330)
..+
T Consensus 251 v~g 253 (264)
T 2pd6_A 251 VTG 253 (264)
T ss_dssp EST
T ss_pred ECC
Confidence 554
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=281.53 Aligned_cols=247 Identities=18% Similarity=0.209 Sum_probs=201.4
Q ss_pred cccCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHH
Q psy13409 7 KCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSV 86 (330)
Q Consensus 7 ~~~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si 86 (330)
.+....+++||++|||||+||||++++++|+++|++|++++|+.+++++..+++.... +.++.++.+|+++.+++
T Consensus 17 ~~~~~~~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~Dl~~~~~~ 91 (302)
T 1w6u_A 17 AMLPPNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT-----GNKVHAIQCDVRDPDMV 91 (302)
T ss_dssp CCSCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-----SSCEEEEECCTTCHHHH
T ss_pred CCCCcccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-----CCceEEEEeCCCCHHHH
Confidence 3344557899999999999999999999999999999999999988888887776542 45789999999999999
Q ss_pred HHHHHHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhh-hCCCeEEEEcCCCcccCC
Q psy13409 87 RKCAQEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIK-SAPARIINLSSLAHTWGD 163 (330)
Q Consensus 87 ~~l~~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~-~~~g~IV~iSS~~~~~~~ 163 (330)
+++++.+.+.++++|++|||||.... ..+.+.++++..+++|+.+++.+++.+++.|.+ .+.++||++||..+..+.
T Consensus 92 ~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~~ 171 (302)
T 1w6u_A 92 QNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGS 171 (302)
T ss_dssp HHHHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcccccccCC
Confidence 99999999999999999999997643 256788999999999999999999999999973 456899999998877664
Q ss_pred CCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccc
Q psy13409 164 GSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHY 243 (330)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (330)
++...|++||++++.++++++.+++
T Consensus 172 --------------~~~~~Y~~sK~a~~~~~~~la~~~~----------------------------------------- 196 (302)
T 1w6u_A 172 --------------GFVVPSASAKAGVEAMSKSLAAEWG----------------------------------------- 196 (302)
T ss_dssp --------------TTCHHHHHHHHHHHHHHHHHHHHHG-----------------------------------------
T ss_pred --------------CCcchhHHHHHHHHHHHHHHHHHhh-----------------------------------------
Confidence 6778999999999999999999998
Q ss_pred ccccccCCCCCCCCceeEEEeeCcccccC-cccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCcee
Q psy13409 244 CKNVLFHPPGANITNVNTYAVHPGVVDTE-LSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLY 322 (330)
Q Consensus 244 ~~~~~~~~~~~~~~~i~v~~v~pG~v~t~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~ 322 (330)
. .||++++|+||+|+|+ +.....................++.+|+|+|+++++|+++ .+++++|+.
T Consensus 197 ---------~---~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dva~~~~~l~~~-~~~~~~G~~ 263 (302)
T 1w6u_A 197 ---------K---YGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIPCGRLGTVEELANLAAFLCSD-YASWINGAV 263 (302)
T ss_dssp ---------G---GTEEEEEEEECCBCC------CCTTSHHHHHHHTTCTTSSCBCHHHHHHHHHHHTSG-GGTTCCSCE
T ss_pred ---------h---cCcEEEEEeeccCCCcchhhhcccchhhHHHHHhcCCcCCCCCHHHHHHHHHHHcCC-cccccCCCE
Confidence 5 7999999999999998 4443322211111222212222378999999999999965 457899998
Q ss_pred cccC
Q psy13409 323 YAKA 326 (330)
Q Consensus 323 ~~~~ 326 (330)
|...
T Consensus 264 ~~v~ 267 (302)
T 1w6u_A 264 IKFD 267 (302)
T ss_dssp EEES
T ss_pred EEEC
Confidence 8644
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-38 Score=284.29 Aligned_cols=226 Identities=21% Similarity=0.156 Sum_probs=187.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHH-CCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAK-RGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~-~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
.++|++|||||++|||++++++|++ .|+.|++++|+.+. ....+.++.+|++++++++++++.
T Consensus 2 ~~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~----------------~~~~~~~~~~Dv~~~~~v~~~~~~ 65 (244)
T 4e4y_A 2 NAMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSF----------------SAENLKFIKADLTKQQDITNVLDI 65 (244)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCC----------------CCTTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEecccccc----------------ccccceEEecCcCCHHHHHHHHHH
Confidence 4689999999999999999999999 78899999988641 234678999999999999999955
Q ss_pred HHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 93 ILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
+ + ++++|+||||||.... ..+.+.++|++++++|+.+++++++.++|.|.+. |+||++||..+..+.
T Consensus 66 ~-~-~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~--g~iv~~sS~~~~~~~------- 134 (244)
T 4e4y_A 66 I-K-NVSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVG--ASIVFNGSDQCFIAK------- 134 (244)
T ss_dssp T-T-TCCEEEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEE--EEEEEECCGGGTCCC-------
T ss_pred H-H-hCCCCEEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccC--cEEEEECCHHHccCC-------
Confidence 4 4 7799999999998753 3678999999999999999999999999998664 899999999887774
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
+....|++||+|+++|+++|+.|++
T Consensus 135 -------~~~~~Y~asKaa~~~~~~~la~e~~------------------------------------------------ 159 (244)
T 4e4y_A 135 -------PNSFAYTLSKGAIAQMTKSLALDLA------------------------------------------------ 159 (244)
T ss_dssp -------TTBHHHHHHHHHHHHHHHHHHHHHG------------------------------------------------
T ss_pred -------CCCchhHHHHHHHHHHHHHHHHHHH------------------------------------------------
Confidence 7788999999999999999999998
Q ss_pred CCCCCCCceeEEEeeCcccccCcccccCCCch---------hhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCce
Q psy13409 251 PPGANITNVNTYAVHPGVVDTELSRHFDSIIP---------GTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGL 321 (330)
Q Consensus 251 ~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~ 321 (330)
+ .||+||+|+||+|+|++.+....... ............++.+|+|+|++++||+++ .++++||+
T Consensus 160 --~---~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l~s~-~~~~itG~ 233 (244)
T 4e4y_A 160 --K---YQIRVNTVCPGTVDTDLYRNLIQKYANNVGISFDEAQKQEEKEFPLNRIAQPQEIAELVIFLLSD-KSKFMTGG 233 (244)
T ss_dssp --G---GTCEEEEEEESCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHTTSTTSSCBCHHHHHHHHHHHHSG-GGTTCCSC
T ss_pred --H---cCeEEEEEecCccCchhhHHHHHhhhhhcCCCHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHhcC-ccccccCC
Confidence 5 79999999999999998765422110 111222222223388999999999999966 56799999
Q ss_pred ecccCC
Q psy13409 322 YYAKAD 327 (330)
Q Consensus 322 ~~~~~~ 327 (330)
.|...+
T Consensus 234 ~i~vdG 239 (244)
T 4e4y_A 234 LIPIDG 239 (244)
T ss_dssp EEEEST
T ss_pred eEeECC
Confidence 987654
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-36 Score=277.51 Aligned_cols=246 Identities=19% Similarity=0.244 Sum_probs=200.8
Q ss_pred cccCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHH
Q psy13409 7 KCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSV 86 (330)
Q Consensus 7 ~~~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si 86 (330)
.....+++++|++|||||++|||++++++|+++|++|++++|+.+..++..+++. ...++.++.+|++|++++
T Consensus 7 ~~~~~~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-------~~~~~~~~~~D~~~~~~~ 79 (278)
T 2bgk_A 7 PDSSTNRLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIG-------SPDVISFVHCDVTKDEDV 79 (278)
T ss_dssp ----CCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC-------CTTTEEEEECCTTCHHHH
T ss_pred CCCCcccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhC-------CCCceEEEECCCCCHHHH
Confidence 3344457899999999999999999999999999999999999877666555442 123789999999999999
Q ss_pred HHHHHHHHhcCCCeeEEEEcCCCCCC----CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccC
Q psy13409 87 RKCAQEILDNESAIHLLINNAGVMMC----PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWG 162 (330)
Q Consensus 87 ~~l~~~i~~~~g~iDvlInnAG~~~~----~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~ 162 (330)
+++++++.+.++++|++|||||.... ..+.+.++|++.+++|+.+++++++.+++.|.+++.++||++||..+..+
T Consensus 80 ~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~ 159 (278)
T 2bgk_A 80 RNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTA 159 (278)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCC
T ss_pred HHHHHHHHHHcCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEeeccccCC
Confidence 99999999999999999999997642 25678899999999999999999999999998887899999999887665
Q ss_pred CCCCcccccccccCCC-cchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCc
Q psy13409 163 DGSMHFEDINLEKGYS-ATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTN 241 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~-~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (330)
. + ....|++||++++.++++++.|++
T Consensus 160 ~--------------~~~~~~Y~~sK~a~~~~~~~la~e~~--------------------------------------- 186 (278)
T 2bgk_A 160 G--------------EGVSHVYTATKHAVLGLTTSLCTELG--------------------------------------- 186 (278)
T ss_dssp C--------------TTSCHHHHHHHHHHHHHHHHHHHHHG---------------------------------------
T ss_pred C--------------CCCCcchHHHHHHHHHHHHHHHHHHh---------------------------------------
Confidence 3 3 677899999999999999999998
Q ss_pred ccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCc-hhhHHHHHH--hhhhhccChHHHHHHHHHhhcccccccc
Q psy13409 242 HYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSII-PGTAWLYQR--VGGLFIKSPLQGAQTTLYCALDKKCERE 318 (330)
Q Consensus 242 ~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~e~a~~~~~l~~~~~~~~~ 318 (330)
+ .||++++|+||+|.|++........ ......... ....++.+|+|+|+++++|+++ ...++
T Consensus 187 -----------~---~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~-~~~~~ 251 (278)
T 2bgk_A 187 -----------E---YGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAANLKGTLLRAEDVADAVAYLAGD-ESKYV 251 (278)
T ss_dssp -----------G---GTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHTCSSCSCCCCHHHHHHHHHHHHSG-GGTTC
T ss_pred -----------h---cCcEEEEEEeceecchhhhhhcccchhHHHHhhhcccccccccCCHHHHHHHHHHHcCc-ccccC
Confidence 5 7999999999999999876543321 111111111 1112378999999999999965 45689
Q ss_pred CceecccCC
Q psy13409 319 TGLYYAKAD 327 (330)
Q Consensus 319 ~G~~~~~~~ 327 (330)
+|++|....
T Consensus 252 ~G~~~~v~g 260 (278)
T 2bgk_A 252 SGLNLVIDG 260 (278)
T ss_dssp CSCEEEEST
T ss_pred CCCEEEECC
Confidence 999887543
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-37 Score=282.24 Aligned_cols=241 Identities=22% Similarity=0.157 Sum_probs=200.2
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
+++++|++|||||++|||++++++|+++|++|++++|+.+.+++..+.+... +.++.++.+|++++++++++++
T Consensus 30 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~ 103 (279)
T 3ctm_A 30 FSLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTY------GVHSKAYKCNISDPKSVEETIS 103 (279)
T ss_dssp GCCTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHHHHH------CSCEEEEECCTTCHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcceEEEeecCCHHHHHHHHH
Confidence 4689999999999999999999999999999999999987777766666542 5678999999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCC---CC-CCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCc
Q psy13409 92 EILDNESAIHLLINNAGVMMC---PR-QLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~---~~-~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~ 167 (330)
++.+.++++|++|||||.... .. +.+.+++++.+++|+.+++.+++.+++.|.+++.++||++||..+..+.
T Consensus 104 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~---- 179 (279)
T 3ctm_A 104 QQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGKGSLIITSSISGKIVN---- 179 (279)
T ss_dssp HHHHHHSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSCC-----
T ss_pred HHHHHhCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEECchHhccCC----
Confidence 999989999999999998644 23 6778899999999999999999999999998888999999999876551
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
..+....|++||++++.++++++.|++
T Consensus 180 --------~~~~~~~Y~~sK~a~~~~~~~la~e~~--------------------------------------------- 206 (279)
T 3ctm_A 180 --------IPQLQAPYNTAKAACTHLAKSLAIEWA--------------------------------------------- 206 (279)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHHHHHHTT---------------------------------------------
T ss_pred --------CCCCcccHHHHHHHHHHHHHHHHHHhc---------------------------------------------
Confidence 125678999999999999999999998
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
. .+ +||+|+||+|+|++..... ..............++.+|+|+|+.++||+++ .+++++|+.|...+
T Consensus 207 -----~---~~-~v~~v~Pg~v~t~~~~~~~--~~~~~~~~~~~p~~~~~~~~dvA~~~~~l~s~-~~~~~tG~~i~vdg 274 (279)
T 3ctm_A 207 -----P---FA-RVNTISPGYIDTDITDFAS--KDMKAKWWQLTPLGREGLTQELVGGYLYLASN-ASTFTTGSDVVIDG 274 (279)
T ss_dssp -----T---TC-EEEEEEECSBSSTTTSSCC--HHHHHHHHHHSTTCSCBCGGGTHHHHHHHHSG-GGTTCCSCEEEEST
T ss_pred -----c---cC-CEEEEeccCCccccccccC--hHHHHHHHHhCCccCCcCHHHHHHHHHHHhCc-cccCccCCEEEECC
Confidence 5 68 9999999999999875321 11111111222222388999999999999966 46799999987543
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=279.72 Aligned_cols=234 Identities=25% Similarity=0.288 Sum_probs=193.2
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
.+++|++|||||++|||++++++|+++|++|++++|+.+++++..+++.+.. .+.++.++.+|++|+++++++++.
T Consensus 4 m~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~~D~~~~~~v~~~~~~ 79 (267)
T 2gdz_A 4 MVNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQF----EPQKTLFIQCDVADQQQLRDTFRK 79 (267)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTS----CGGGEEEEECCTTSHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhc----CCCceEEEecCCCCHHHHHHHHHH
Confidence 3789999999999999999999999999999999999888777666664321 245788999999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC---CCeEEEEcCCCcccCCCCCccc
Q psy13409 93 ILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA---PARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~---~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
+.+.++++|+||||||.. +.++|++.+++|+.+++.+++.+++.|.+++ .|+||++||..+..+.
T Consensus 80 ~~~~~g~id~lv~~Ag~~------~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------ 147 (267)
T 2gdz_A 80 VVDHFGRLDILVNNAGVN------NEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPV------ 147 (267)
T ss_dssp HHHHHSCCCEEEECCCCC------CSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCC------
T ss_pred HHHHcCCCCEEEECCCCC------ChhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccCCC------
Confidence 999999999999999975 3477899999999999999999999998753 5899999999887664
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHH--HHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTEL--AKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~l--a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
+....|++||++++.|++++ +.|++
T Consensus 148 --------~~~~~Y~~sK~a~~~~~~~~ala~e~~--------------------------------------------- 174 (267)
T 2gdz_A 148 --------AQQPVYCASKHGIVGFTRSAALAANLM--------------------------------------------- 174 (267)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------
T ss_pred --------CCCchHHHHHHHHHHHHHHHHHHHHhc---------------------------------------------
Confidence 67789999999999999995 67887
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCCCch------hhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCce
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIP------GTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGL 321 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~ 321 (330)
+ .||+||+|+||+|+|++......... .......++++.++.+|+|+|++++||++++ ++||+
T Consensus 175 -----~---~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~v~~l~s~~---~~~G~ 243 (267)
T 2gdz_A 175 -----N---SGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMIKYYGILDPPLIANGLITLIEDD---ALNGA 243 (267)
T ss_dssp -----T---CCEEEEEEEESCBSSHHHHGGGCHHHHGGGGGGHHHHHHHHHHHCCBCHHHHHHHHHHHHHCT---TCSSC
T ss_pred -----c---CCcEEEEEecCcCcchhhhccccccccchhhhHHHHHHHHhccccCCCHHHHHHHHHHHhcCc---CCCCc
Confidence 5 79999999999999998654322110 0111223445544779999999999999764 48998
Q ss_pred ecccC
Q psy13409 322 YYAKA 326 (330)
Q Consensus 322 ~~~~~ 326 (330)
.|.-.
T Consensus 244 ~~~v~ 248 (267)
T 2gdz_A 244 IMKIT 248 (267)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 87543
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=274.87 Aligned_cols=241 Identities=22% Similarity=0.285 Sum_probs=202.5
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
+++++|++|||||+||||++++++|+++|++|++++|+.+.+++..+++... +.++.++.+|++++++++++++
T Consensus 7 ~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~ 80 (255)
T 1fmc_A 7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL------GGQAFACRCDITSEQELSALAD 80 (255)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHh------CCceEEEEcCCCCHHHHHHHHH
Confidence 4689999999999999999999999999999999999998888777777652 5678899999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCCC-CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 92 EILDNESAIHLLINNAGVMMCP-RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~-~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
++.+.++++|++|||||..... .+.+.+++++.+++|+.+++++++.++|.|.+++.++||++||..+..+.
T Consensus 81 ~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~------- 153 (255)
T 1fmc_A 81 FAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKN------- 153 (255)
T ss_dssp HHHHHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCC-------
T ss_pred HHHHhcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcCCC-------
Confidence 9999899999999999986532 36788999999999999999999999999988878999999998876553
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
++...|++||++++.++++++.|++
T Consensus 154 -------~~~~~Y~~sK~a~~~~~~~~~~~~~------------------------------------------------ 178 (255)
T 1fmc_A 154 -------INMTSYASSKAAASHLVRNMAFDLG------------------------------------------------ 178 (255)
T ss_dssp -------TTCHHHHHHHHHHHHHHHHHHHHHH------------------------------------------------
T ss_pred -------CCCcccHHHHHHHHHHHHHHHHHhh------------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred CCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 251 PPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 251 ~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
. +||++|+|+||+|.|++...... ..............++.+|+|+|+++++++++ .+.+++|+.|.-..
T Consensus 179 --~---~~i~v~~v~Pg~v~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~-~~~~~~G~~~~v~g 248 (255)
T 1fmc_A 179 --E---KNIRVNGIAPGAILTDALKSVIT-PEIEQKMLQHTPIRRLGQPQDIANAALFLCSP-AASWVSGQILTVSG 248 (255)
T ss_dssp --T---TTEEEEEEEECSBCSHHHHTTCC-HHHHHHHHHTCSSCSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEEST
T ss_pred --h---cCcEEEEEecccCcchhhhhccC-hHHHHHHHhcCCcccCCCHHHHHHHHHHHhCC-ccccCCCcEEEECC
Confidence 5 79999999999999998765321 11112222212222378999999999999965 45689999886543
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-37 Score=280.56 Aligned_cols=226 Identities=14% Similarity=0.146 Sum_probs=187.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEE-e--cChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMA-C--RSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~-~--R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
||++|||||++|||++++++|+++|++|+++ + |+.+++++..+++ . + +|+.|++++++++++
T Consensus 1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~~~~~~~~~~-~-------~-------~~~~~~~~v~~~~~~ 65 (244)
T 1zmo_A 1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESEN-P-------G-------TIALAEQKPERLVDA 65 (244)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHS-T-------T-------EEECCCCCGGGHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHHHHHHHHHHh-C-------C-------CcccCHHHHHHHHHH
Confidence 5899999999999999999999999999999 6 9988776665443 1 1 123377788899999
Q ss_pred HHhcCCCeeEEEEcCCCCCC-----CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCc
Q psy13409 93 ILDNESAIHLLINNAGVMMC-----PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~-----~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~ 167 (330)
+.+.++++|+||||||.... ..+.+.++|++++++|+.+++.+++.++|.|.+++.|+||++||..+..+.
T Consensus 66 ~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~---- 141 (244)
T 1zmo_A 66 TLQHGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGGASVIFITSSVGKKPL---- 141 (244)
T ss_dssp HGGGSSCEEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCC----
T ss_pred HHHHcCCCCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhCCCC----
Confidence 99999999999999998644 357889999999999999999999999999988878999999999887764
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
+....|++||+|+++|+++++.|++
T Consensus 142 ----------~~~~~Y~asK~a~~~~~~~la~e~~--------------------------------------------- 166 (244)
T 1zmo_A 142 ----------AYNPLYGPARAATVALVESAAKTLS--------------------------------------------- 166 (244)
T ss_dssp ----------TTCTTHHHHHHHHHHHHHHHHHHHG---------------------------------------------
T ss_pred ----------CCchHHHHHHHHHHHHHHHHHHHHh---------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcc---cccCCCchhhHHHH---HHhhhhhccChHHHHHHHHHhhccccccccCce
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELS---RHFDSIIPGTAWLY---QRVGGLFIKSPLQGAQTTLYCALDKKCERETGL 321 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~---~~~~~~~~~~~~~~---~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~ 321 (330)
+ .||+||+|+||+|+|++. ...... ...+... .++++ +.+|+|+|++++||+++ .++++||+
T Consensus 167 -----~---~gi~v~~v~PG~v~T~~~~~~~~~~~~-~~~~~~~~~~~p~~r--~~~pe~vA~~v~~l~s~-~~~~~tG~ 234 (244)
T 1zmo_A 167 -----R---DGILLYAIGPNFFNNPTYFPTSDWENN-PELRERVDRDVPLGR--LGRPDEMGALITFLASR-RAAPIVGQ 234 (244)
T ss_dssp -----G---GTEEEEEEEESSBCBTTTBCHHHHHHC-HHHHHHHHHHCTTCS--CBCHHHHHHHHHHHHTT-TTGGGTTC
T ss_pred -----h---cCcEEEEEeeCCCcCCcccccccccch-HHHHHHHhcCCCCCC--CcCHHHHHHHHHHHcCc-cccCccCC
Confidence 5 799999999999999987 443211 1111111 23343 88999999999999965 56799999
Q ss_pred ecccCC
Q psy13409 322 YYAKAD 327 (330)
Q Consensus 322 ~~~~~~ 327 (330)
+|...+
T Consensus 235 ~i~vdg 240 (244)
T 1zmo_A 235 FFAFTG 240 (244)
T ss_dssp EEEEST
T ss_pred EEEeCC
Confidence 987544
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-36 Score=282.15 Aligned_cols=252 Identities=23% Similarity=0.297 Sum_probs=202.8
Q ss_pred cCcccCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHH
Q psy13409 5 SGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLK 84 (330)
Q Consensus 5 ~~~~~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~ 84 (330)
..++.++.++++|++|||||++|||++++++|+++|++|++++|+.+++++..+++...... ..+.++.++.+|+++++
T Consensus 7 ~~~~~~~~~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~D~~~~~ 85 (303)
T 1yxm_A 7 GRSYLAPGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPP-TKQARVIPIQCNIRNEE 85 (303)
T ss_dssp CCCSBCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCT-TCCCCEEEEECCTTCHH
T ss_pred cCCccCcCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccc-cCCccEEEEecCCCCHH
Confidence 34445556799999999999999999999999999999999999998888888777652211 12567999999999999
Q ss_pred HHHHHHHHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccC
Q psy13409 85 SVRKCAQEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWG 162 (330)
Q Consensus 85 si~~l~~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~ 162 (330)
+++++++.+.+.++++|++|||||.... ..+.+.+++++.+++|+.+++++++.+++.+.+++.++||++||.. ..+
T Consensus 86 ~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~-~~~ 164 (303)
T 1yxm_A 86 EVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPT-KAG 164 (303)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCC-TTC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEeec-ccC
Confidence 9999999999999999999999997643 2567889999999999999999999999976665579999999987 444
Q ss_pred CCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcc
Q psy13409 163 DGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNH 242 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (330)
. +....|+++|+++++++++++.|+.
T Consensus 165 ~--------------~~~~~Y~~sK~a~~~~~~~la~e~~---------------------------------------- 190 (303)
T 1yxm_A 165 F--------------PLAVHSGAARAGVYNLTKSLALEWA---------------------------------------- 190 (303)
T ss_dssp C--------------TTCHHHHHHHHHHHHHHHHHHHHTG----------------------------------------
T ss_pred C--------------CcchhhHHHHHHHHHHHHHHHHHhc----------------------------------------
Confidence 3 6678999999999999999999998
Q ss_pred cccccccCCCCCCCCceeEEEeeCcccccCcccc-cCC-CchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCc
Q psy13409 243 YCKNVLFHPPGANITNVNTYAVHPGVVDTELSRH-FDS-IIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETG 320 (330)
Q Consensus 243 ~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G 320 (330)
. .||+||+|+||+|.|++... ... ...............++.+|+|+|++++||+++ .++++||
T Consensus 191 ----------~---~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~i~~l~~~-~~~~~~G 256 (303)
T 1yxm_A 191 ----------C---SGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKIPAKRIGVPEEVSSVVCFLLSP-AASFITG 256 (303)
T ss_dssp ----------G---GTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGGSTTSSCBCTHHHHHHHHHHHSG-GGTTCCS
T ss_pred ----------c---cCeEEEEEecCCcccchhhhhccccchHHHHHHHhcCcccCCCCHHHHHHHHHHHhCc-ccccCCC
Confidence 5 79999999999999995321 111 011111111111222378999999999999965 4579999
Q ss_pred eecccC
Q psy13409 321 LYYAKA 326 (330)
Q Consensus 321 ~~~~~~ 326 (330)
++|...
T Consensus 257 ~~~~v~ 262 (303)
T 1yxm_A 257 QSVDVD 262 (303)
T ss_dssp CEEEES
T ss_pred cEEEEC
Confidence 988654
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-36 Score=272.03 Aligned_cols=235 Identities=21% Similarity=0.262 Sum_probs=191.3
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
+++++||++|||||++|||++++++|+++|++|++++|+.+++++..+++ ..+.++.+|+++++++++++
T Consensus 2 ~~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~D~~~~~~~~~~~ 71 (244)
T 3d3w_A 2 ELFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC----------PGIEPVCVDLGDWEATERAL 71 (244)
T ss_dssp CCCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS----------TTCEEEECCTTCHHHHHHHH
T ss_pred ccccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc----------CCCCEEEEeCCCHHHHHHHH
Confidence 45789999999999999999999999999999999999987766554332 12456799999999988877
Q ss_pred HHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCCc
Q psy13409 91 QEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~~ 167 (330)
+ .++++|++|||||.... ..+.+.+++++.+++|+.+++.+++.+++.|.+++ .++||++||..+..+.
T Consensus 72 ~----~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~---- 143 (244)
T 3d3w_A 72 G----SVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAV---- 143 (244)
T ss_dssp T----TCCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC----
T ss_pred H----HcCCCCEEEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhccCC----
Confidence 5 56889999999997653 25678899999999999999999999999998876 7999999998876653
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
++...|++||++++.++++++.|++
T Consensus 144 ----------~~~~~Y~~sK~a~~~~~~~la~e~~--------------------------------------------- 168 (244)
T 3d3w_A 144 ----------TNHSVYCSTKGALDMLTKVMALELG--------------------------------------------- 168 (244)
T ss_dssp ----------TTBHHHHHHHHHHHHHHHHHHHHHG---------------------------------------------
T ss_pred ----------CCCchHHHHHHHHHHHHHHHHHHhc---------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
. .||+|++|+||+|.|++.....................++.+|+|+|+++++++++ .+++++|+.|...+
T Consensus 169 -----~---~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~-~~~~~~G~~~~v~g 239 (244)
T 3d3w_A 169 -----P---HKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIPLGKFAEVEHVVNAILFLLSD-RSGMTTGSTLPVEG 239 (244)
T ss_dssp -----G---GTEEEEEEEECCBTTTTHHHHSCSTTHHHHHHHTCTTCSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEEST
T ss_pred -----c---cCeEEEEEEeccccccchhhhccChHHHHHHHhhCCCCCCcCHHHHHHHHHHHcCc-cccCCCCCEEEECC
Confidence 5 79999999999999998764322222212222222222378999999999999965 45689999887543
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-36 Score=270.92 Aligned_cols=226 Identities=22% Similarity=0.288 Sum_probs=197.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCC-------EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGA-------RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVR 87 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~-------~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~ 87 (330)
++|++|||||++|||++++++|+++|+ +|++++|+.++++++.+++.. .+.++.++.+|++++++++
T Consensus 1 ~~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~------~~~~~~~~~~D~~~~~~v~ 74 (244)
T 2bd0_A 1 MKHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRA------EGALTDTITADISDMADVR 74 (244)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHT------TTCEEEEEECCTTSHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHc------cCCeeeEEEecCCCHHHHH
Confidence 478999999999999999999999999 999999999888877777654 2568999999999999999
Q ss_pred HHHHHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCC
Q psy13409 88 KCAQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGS 165 (330)
Q Consensus 88 ~l~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~ 165 (330)
++++++.+.++++|++|||||..... .+.+.++++..+++|+.+++.+++.++|.|.+++.++||++||..+..+.
T Consensus 75 ~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~-- 152 (244)
T 2bd0_A 75 RLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKAF-- 152 (244)
T ss_dssp HHHHHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC--
T ss_pred HHHHHHHHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEEecchhcCCC--
Confidence 99999999999999999999986532 56788999999999999999999999999988878999999998877663
Q ss_pred CcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccc
Q psy13409 166 MHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCK 245 (330)
Q Consensus 166 ~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (330)
++...|++||++++.|+++++.|++
T Consensus 153 ------------~~~~~Y~~sK~a~~~~~~~la~e~~------------------------------------------- 177 (244)
T 2bd0_A 153 ------------RHSSIYCMSKFGQRGLVETMRLYAR------------------------------------------- 177 (244)
T ss_dssp ------------TTCHHHHHHHHHHHHHHHHHHHHHT-------------------------------------------
T ss_pred ------------CCCchhHHHHHHHHHHHHHHHHHhh-------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred ccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceeccc
Q psy13409 246 NVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAK 325 (330)
Q Consensus 246 ~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~ 325 (330)
. .||+|++|+||+|+|++........ ..++.+|+|+|+.++++++++ ..+++|+.+-.
T Consensus 178 -------~---~gi~v~~v~Pg~v~t~~~~~~~~~~-----------~~~~~~~~dva~~~~~l~~~~-~~~~~g~~~~~ 235 (244)
T 2bd0_A 178 -------K---CNVRITDVQPGAVYTPMWGKVDDEM-----------QALMMMPEDIAAPVVQAYLQP-SRTVVEEIILR 235 (244)
T ss_dssp -------T---TTEEEEEEEECCBCSTTTCCCCSTT-----------GGGSBCHHHHHHHHHHHHTSC-TTEEEEEEEEE
T ss_pred -------c---cCcEEEEEECCCccchhhhhccccc-----------cccCCCHHHHHHHHHHHHhCC-ccccchheEEe
Confidence 5 7999999999999999876543211 123789999999999999764 56889887654
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=274.54 Aligned_cols=239 Identities=28% Similarity=0.346 Sum_probs=199.0
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
++++|++|||||++|||++++++|+++|++|++++|+.+.+++..+++.. ..++.++.+|++++++++++++.
T Consensus 3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~ 75 (251)
T 1zk4_A 3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT-------PDQIQFFQHDSSDEDGWTKLFDA 75 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC-------TTTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhc-------cCceEEEECCCCCHHHHHHHHHH
Confidence 57899999999999999999999999999999999998877766655421 25789999999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCC-CeEEEEcCCCcccCCCCCccc
Q psy13409 93 ILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAP-ARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~-g~IV~iSS~~~~~~~~~~~~~ 169 (330)
+.+.++++|++|||||.... ..+.+.++|++.+++|+.+++.+++.+++.|.+++. ++||++||..+..+.
T Consensus 76 ~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~------ 149 (251)
T 1zk4_A 76 TEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGD------ 149 (251)
T ss_dssp HHHHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSCC------
T ss_pred HHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCchhccCC------
Confidence 99999999999999998653 256788999999999999999999999999988766 899999998877664
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
+....|++||++++.++++++.|+...
T Consensus 150 --------~~~~~Y~~sK~a~~~~~~~~a~e~~~~--------------------------------------------- 176 (251)
T 1zk4_A 150 --------PSLGAYNASKGAVRIMSKSAALDCALK--------------------------------------------- 176 (251)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHHHHT---------------------------------------------
T ss_pred --------CCCccchHHHHHHHHHHHHHHHHhccc---------------------------------------------
Confidence 677899999999999999999998611
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
. .||++++|+||+|+|++.+..... ....... .++++ +.+|+|+|+++++|+++ .+++++|+.|....
T Consensus 177 ---~---~~i~v~~v~Pg~v~t~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~dva~~~~~l~~~-~~~~~~G~~~~v~g 246 (251)
T 1zk4_A 177 ---D---YDVRVNTVHPGYIKTPLVDDLPGA-EEAMSQRTKTPMGH--IGEPNDIAYICVYLASN-ESKFATGSEFVVDG 246 (251)
T ss_dssp ---T---CSEEEEEEEECCBCCHHHHTSTTH-HHHHTSTTTCTTSS--CBCHHHHHHHHHHHHSG-GGTTCCSCEEEEST
T ss_pred ---C---CCeEEEEEeeCcCcchhhhhcCch-hhhHHHhhcCCCCC--CcCHHHHHHHHHHHcCc-ccccccCcEEEECC
Confidence 2 699999999999999987654211 0000000 12333 78999999999999966 45689999886543
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=276.54 Aligned_cols=240 Identities=23% Similarity=0.267 Sum_probs=199.6
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecC-hhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRS-LEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~-~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.++++|++|||||+||||++++++|+++|++|++++|+ .+.+++..+++... +.++.++.+|+++++++++++
T Consensus 3 ~~l~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~ 76 (258)
T 3afn_B 3 PDLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRAD------GGDAAFFAADLATSEACQQLV 76 (258)
T ss_dssp GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHT------TCEEEEEECCTTSHHHHHHHH
T ss_pred cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhc------CCceEEEECCCCCHHHHHHHH
Confidence 35789999999999999999999999999999999999 77787777777652 568999999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCC-CCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC--C---CeEEEEcCCCccc-
Q psy13409 91 QEILDNESAIHLLINNAGV-MMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA--P---ARIINLSSLAHTW- 161 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~-~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~--~---g~IV~iSS~~~~~- 161 (330)
+++.+.++++|++|||||. ... ..+.+.++++..+++|+.+++.+++.++|.|.+++ . ++||++||..+..
T Consensus 77 ~~~~~~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~ 156 (258)
T 3afn_B 77 DEFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTG 156 (258)
T ss_dssp HHHHHHHSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHHHC
T ss_pred HHHHHHcCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhccC
Confidence 9999999999999999997 332 25678899999999999999999999999997654 3 8999999988765
Q ss_pred CCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCc
Q psy13409 162 GDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTN 241 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (330)
+. ++...|++||++++.++++++.|++
T Consensus 157 ~~--------------~~~~~Y~~sK~a~~~~~~~~~~e~~--------------------------------------- 183 (258)
T 3afn_B 157 GG--------------PGAGLYGAAKAFLHNVHKNWVDFHT--------------------------------------- 183 (258)
T ss_dssp CC--------------TTCHHHHHHHHHHHHHHHHHHHHHG---------------------------------------
T ss_pred CC--------------CCchHHHHHHHHHHHHHHHHHHhhc---------------------------------------
Confidence 43 6778999999999999999999998
Q ss_pred ccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhcccccc-ccCc
Q psy13409 242 HYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCE-RETG 320 (330)
Q Consensus 242 ~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~-~~~G 320 (330)
+ .||+||+|+||+|+|++..... ..............++.+|+|+|++++++++++ .+ +++|
T Consensus 184 -----------~---~gi~v~~v~Pg~v~t~~~~~~~--~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~-~~~~~~G 246 (258)
T 3afn_B 184 -----------K---DGVRFNIVSPGTVDTAFHADKT--QDVRDRISNGIPMGRFGTAEEMAPAFLFFASHL-ASGYITG 246 (258)
T ss_dssp -----------G---GTEEEEEEEECSBSSGGGTTCC--HHHHHHHHTTCTTCSCBCGGGTHHHHHHHHCHH-HHTTCCS
T ss_pred -----------c---cCeEEEEEeCCCcccccccccC--HHHHHHHhccCCCCcCCCHHHHHHHHHHHhCcc-hhccccC
Confidence 5 7999999999999999876531 111122222112223789999999999999653 45 8999
Q ss_pred eecccCC
Q psy13409 321 LYYAKAD 327 (330)
Q Consensus 321 ~~~~~~~ 327 (330)
+.|....
T Consensus 247 ~~~~v~g 253 (258)
T 3afn_B 247 QVLDING 253 (258)
T ss_dssp EEEEEST
T ss_pred CEEeECC
Confidence 9887544
|
| >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-37 Score=292.17 Aligned_cols=242 Identities=14% Similarity=0.088 Sum_probs=189.7
Q ss_pred CCCEEEEEcCCC--chHHHHHHHHHHCCCEEEEEecChhH--HHHHHHHHHHhhcc----cCCCCeEEEEEccCCCH--H
Q psy13409 15 DGKTAIVTGSNT--GIGKCTANELAKRGARVIMACRSLEK--AETAADDIRTSLKD----VKDAGEVVIRQLDLSSL--K 84 (330)
Q Consensus 15 ~gk~aLITGas~--gIG~aia~~L~~~G~~Vil~~R~~~~--l~~~~~~l~~~~~~----~~~~~~v~~i~~Dls~~--~ 84 (330)
++|++|||||++ |||+++|++|+++|++|++++|++.. ..+..+..+..... ......+.++.||+++. +
T Consensus 1 ~~k~~lITGas~~~GIG~aiA~~la~~G~~Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~ 80 (329)
T 3lt0_A 1 NEDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAN 80 (329)
T ss_dssp CCCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCSSGG
T ss_pred CCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCccccccccchHHHHHHHHHHHhhcccccccccccccccccchh
Confidence 479999999975 99999999999999999988877521 11111111100000 01234578899999988 8
Q ss_pred ------------------HHHHHHHHHHhcCCCeeEEEEcCCCCC----CCCCCChhhHHHhHHHHHHHHHHHHHHHHHH
Q psy13409 85 ------------------SVRKCAQEILDNESAIHLLINNAGVMM----CPRQLTEDGYELQFATNHLGHYLFTLLLLPR 142 (330)
Q Consensus 85 ------------------si~~l~~~i~~~~g~iDvlInnAG~~~----~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~ 142 (330)
+++++++++.+.++++|+||||||+.. +..+.+.++|++++++|+.+++.+++.++|.
T Consensus 81 ~~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~ 160 (329)
T 3lt0_A 81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNI 160 (329)
T ss_dssp GCCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred hhhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999999742 3367899999999999999999999999999
Q ss_pred HhhhCCCeEEEEcCCCcccCCCCCcccccccccCCCcch-hhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccc
Q psy13409 143 IIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATG-AYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRT 221 (330)
Q Consensus 143 l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~~~~~~-~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~ 221 (330)
|.++ |+||++||.++..+. +... +|++||+|+++|+++|+.|++.
T Consensus 161 m~~~--g~Iv~isS~~~~~~~--------------~~~~~~Y~asKaal~~~~~~la~el~~------------------ 206 (329)
T 3lt0_A 161 MKPQ--SSIISLTYHASQKVV--------------PGYGGGMSSAKAALESDTRVLAYHLGR------------------ 206 (329)
T ss_dssp EEEE--EEEEEEECGGGTSCC--------------TTCTTTHHHHHHHHHHHHHHHHHHHHH------------------
T ss_pred HhhC--CeEEEEeCccccCCC--------------CcchHHHHHHHHHHHHHHHHHHHHhCC------------------
Confidence 9775 899999999988774 5664 8999999999999999999971
Q ss_pred cccchhhhhhhcccCCCCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCch-------------------
Q psy13409 222 KRFSNLTILLCDANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIP------------------- 282 (330)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~------------------- 282 (330)
. .||+||+|+||+|+|++.+......+
T Consensus 207 -------------------------------~---~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (329)
T 3lt0_A 207 -------------------------------N---YNIRINTISAGPLKSRAATAINKLNNTYENNTNQNKNRNRHDVHN 252 (329)
T ss_dssp -------------------------------H---HCCEEEEEEECCCCCHHHHTCC-----------------------
T ss_pred -------------------------------c---cCeEEEEEecceeechhHhhhhhhcccccccccccccccccccch
Confidence 0 28999999999999999876532100
Q ss_pred ------------------------hhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 283 ------------------------GTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 283 ------------------------~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
..+... .++++ +.+|+|+|++++||+++ .++++||+.|...+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r--~~~peevA~~v~fL~s~-~a~~itG~~i~vdG 320 (329)
T 3lt0_A 253 IMNNSGEKEEKKISASQNYTFIDYAIEYSEKYAPLRQ--KLLSTDIGSVASFLLSR-ESRAITGQTIYVDN 320 (329)
T ss_dssp -------------------CHHHHHHHHHHHHSSSCS--CCCHHHHHHHHHHHHSG-GGTTCCSCEEEEST
T ss_pred hhcccccchhhhhhhhcccchhHHHHHHHhhcCcccC--cCCHHHHHHHHHHHhCc-hhccccCcEEEEcC
Confidence 011122 23444 89999999999999965 67899999987543
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=277.51 Aligned_cols=225 Identities=15% Similarity=0.141 Sum_probs=187.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
|++|||||++|||++++++|+++|++|++++|+.+++++..+ +... +.++..+ |+++++++++++.+.
T Consensus 2 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~-l~~~------~~~~~~~-----d~~~v~~~~~~~~~~ 69 (254)
T 1zmt_A 2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEA-FAET------YPQLKPM-----SEQEPAELIEAVTSA 69 (254)
T ss_dssp CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHH-HHHH------CTTSEEC-----CCCSHHHHHHHHHHH
T ss_pred eEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-HHhc------CCcEEEE-----CHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999888776655 5442 3334433 667788999999898
Q ss_pred CCCeeEEEEcCCCC-C--CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccccc
Q psy13409 97 ESAIHLLINNAGVM-M--CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINL 173 (330)
Q Consensus 97 ~g~iDvlInnAG~~-~--~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~ 173 (330)
++++|+||||||.. . +..+.+.++|++.+++|+.+++.+++.++|.|.+++.|+||++||..+..+.
T Consensus 70 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 139 (254)
T 1zmt_A 70 YGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPW---------- 139 (254)
T ss_dssp HSCCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTSCC----------
T ss_pred hCCCCEEEECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCcccccCC----------
Confidence 99999999999986 3 2367889999999999999999999999999988888999999999887764
Q ss_pred ccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCC
Q psy13409 174 EKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPG 253 (330)
Q Consensus 174 ~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (330)
+....|++||+|+++|+++++.|++ +
T Consensus 140 ----~~~~~Y~~sK~a~~~~~~~la~e~~--------------------------------------------------~ 165 (254)
T 1zmt_A 140 ----KELSTYTSARAGACTLANALSKELG--------------------------------------------------E 165 (254)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHHG--------------------------------------------------G
T ss_pred ----CCchHHHHHHHHHHHHHHHHHHHhh--------------------------------------------------h
Confidence 6788999999999999999999998 5
Q ss_pred CCCCceeEEEeeCccc---------ccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCcee
Q psy13409 254 ANITNVNTYAVHPGVV---------DTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLY 322 (330)
Q Consensus 254 ~~~~~i~v~~v~pG~v---------~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~ 322 (330)
.||+||+|+||+| +|++.... ....+... .++++ +.+|+|+|++++||+++ .++++||++
T Consensus 166 ---~gi~v~~v~PG~v~~~~~~~~~~T~~~~~~---~~~~~~~~~~~p~~~--~~~p~dvA~~v~~l~s~-~~~~~tG~~ 236 (254)
T 1zmt_A 166 ---YNIPVFAIGPNYLHSEDSPYFYPTEPWKTN---PEHVAHVKKVTALQR--LGTQKELGELVAFLASG-SCDYLTGQV 236 (254)
T ss_dssp ---GTCCEEEEEESSBCCBTCCSSCBHHHHTTC---HHHHHHHHHHSSSSS--CBCHHHHHHHHHHHHTT-SCGGGTTCE
T ss_pred ---cCcEEEEEecCccccccccccCCCcccccC---hHHHHHHhccCCCCC--CcCHHHHHHHHHHHhCc-ccCCccCCE
Confidence 7999999999999 88775432 11111121 23333 78999999999999976 467999999
Q ss_pred cccC
Q psy13409 323 YAKA 326 (330)
Q Consensus 323 ~~~~ 326 (330)
|...
T Consensus 237 ~~vd 240 (254)
T 1zmt_A 237 FWLA 240 (254)
T ss_dssp EEES
T ss_pred EEEC
Confidence 8654
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-36 Score=279.08 Aligned_cols=239 Identities=28% Similarity=0.361 Sum_probs=194.3
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCH-HHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSL-KSVRKCA 90 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~-~si~~l~ 90 (330)
..+++|++|||||++|||++++++|+++|++|++++|+.+++++..+++.+. .+.++.++.+|++++ +++++++
T Consensus 8 ~~~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~~Dl~~~~~~v~~~~ 82 (311)
T 3o26_A 8 TVTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNS-----NHENVVFHQLDVTDPIATMSSLA 82 (311)
T ss_dssp ----CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT-----TCCSEEEEECCTTSCHHHHHHHH
T ss_pred ccCCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-----CCCceEEEEccCCCcHHHHHHHH
Confidence 3578999999999999999999999999999999999999999888888764 346899999999998 9999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCC--------------------------------CCCCChhhHHHhHHHHHHHHHHHHHH
Q psy13409 91 QEILDNESAIHLLINNAGVMMC--------------------------------PRQLTEDGYELQFATNHLGHYLFTLL 138 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~--------------------------------~~~~~~~~~~~~l~vN~~g~~~l~~~ 138 (330)
+.+.+.++++|+||||||+... ..+.+.+++++.+++|+.|++.+++.
T Consensus 83 ~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~ 162 (311)
T 3o26_A 83 DFIKTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEV 162 (311)
T ss_dssp HHHHHHHSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHhCCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHH
Confidence 9999999999999999998642 13567889999999999999999999
Q ss_pred HHHHHhhhCCCeEEEEcCCCcccCCCCCc-----------c-----------------cccccccC-CCcchhhHHhHHH
Q psy13409 139 LLPRIIKSAPARIINLSSLAHTWGDGSMH-----------F-----------------EDINLEKG-YSATGAYGRSKLA 189 (330)
Q Consensus 139 ~l~~l~~~~~g~IV~iSS~~~~~~~~~~~-----------~-----------------~~~~~~~~-~~~~~~Y~asK~a 189 (330)
++|.|.+++.++||++||..+..+..... + .......+ ++...+|++||+|
T Consensus 163 ~~~~l~~~~~~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a 242 (311)
T 3o26_A 163 LIPLLQLSDSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSKAC 242 (311)
T ss_dssp HHHHHTTSSSCEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTCTTTTTCCSSCHHHHHHHHH
T ss_pred hhHhhccCCCCeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhccccccccCcccchhhHHHHHH
Confidence 99999888889999999998866521000 0 00000111 1356789999999
Q ss_pred HHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCCCCCCceeEEEeeCccc
Q psy13409 190 NILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVV 269 (330)
Q Consensus 190 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v 269 (330)
+++|+++++.|+. +|+||+|+||+|
T Consensus 243 ~~~~~~~la~e~~-------------------------------------------------------~i~v~~v~PG~v 267 (311)
T 3o26_A 243 LNAYTRVLANKIP-------------------------------------------------------KFQVNCVCPGLV 267 (311)
T ss_dssp HHHHHHHHHHHCT-------------------------------------------------------TSEEEEECCCSB
T ss_pred HHHHHHHHHhhcC-------------------------------------------------------CceEEEecCCce
Confidence 9999999999975 499999999999
Q ss_pred ccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCCC
Q psy13409 270 DTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKADL 328 (330)
Q Consensus 270 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~~ 328 (330)
+|++.+... ..+++++|+.+++++..+. ...+|.++...+.
T Consensus 268 ~T~~~~~~~-----------------~~~~~~~a~~~~~~~~~~~-~~~~g~~~~~s~~ 308 (311)
T 3o26_A 268 KTEMNYGIG-----------------NYTAEEGAEHVVRIALFPD-DGPSGFFYDCSEL 308 (311)
T ss_dssp CSGGGTTCC-----------------SBCHHHHHHHHHHHHTCCS-SCCCSCEETC---
T ss_pred ecCCcCCCC-----------------CCCHHHHHHHHHHHHhCCC-CCCCceEeccccc
Confidence 999977543 2589999999999987665 4668888877654
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-36 Score=277.71 Aligned_cols=226 Identities=21% Similarity=0.241 Sum_probs=188.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
.+++|++|||||++|||++++++|+++|++|++++|+.+.+++..++ .+.++.++.+|+++.+++++++++
T Consensus 2 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~---------~~~~~~~~~~Dv~~~~~~~~~~~~ 72 (281)
T 3m1a_A 2 SESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAA---------YPDRAEAISLDVTDGERIDVVAAD 72 (281)
T ss_dssp --CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHH---------CTTTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh---------ccCCceEEEeeCCCHHHHHHHHHH
Confidence 46789999999999999999999999999999999998877665543 256789999999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 93 ILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
+.+.++++|++|||||.... ..+.+.++|+..+++|+.+++.+++.++|.|++++.|+||++||..+..+.
T Consensus 73 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------- 145 (281)
T 3m1a_A 73 VLARYGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERGSGSVVNISSFGGQLSF------- 145 (281)
T ss_dssp HHHHHSCCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCC-------
T ss_pred HHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcCccccCCC-------
Confidence 99999999999999998643 357889999999999999999999999999998888999999999887774
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
++...|++||++++.++++++.|++
T Consensus 146 -------~~~~~Y~~sK~a~~~~~~~la~e~~------------------------------------------------ 170 (281)
T 3m1a_A 146 -------AGFSAYSATKAALEQLSEGLADEVA------------------------------------------------ 170 (281)
T ss_dssp -------TTCHHHHHHHHHHHHHHHHHHHHHG------------------------------------------------
T ss_pred -------CCchHHHHHHHHHHHHHHHHHHHhh------------------------------------------------
Confidence 6788999999999999999999998
Q ss_pred CCCCCCCceeEEEeeCcccccCcccccCC-----CchhhHHH------HHHhhhhhccChHHHHHHHHHhhcccc
Q psy13409 251 PPGANITNVNTYAVHPGVVDTELSRHFDS-----IIPGTAWL------YQRVGGLFIKSPLQGAQTTLYCALDKK 314 (330)
Q Consensus 251 ~~~~~~~~i~v~~v~pG~v~t~~~~~~~~-----~~~~~~~~------~~~~~~~~~~~~~e~a~~~~~l~~~~~ 314 (330)
+ .||+||+|+||+|+|++...... ........ .......++.+|+|+|+++++++.++.
T Consensus 171 --~---~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~a~~~~~~~~~ 240 (281)
T 3m1a_A 171 --P---FGIKVLIVEPGAFRTNLFGKGAAYFSEENPAYAEKVGPTRQLVQGSDGSQPGDPAKAAAAIRLALDTEK 240 (281)
T ss_dssp --G---GTEEEEEEEECCBCCTTTCCCCEEECCBCTTTHHHHHHHHHHHHC-----CBCHHHHHHHHHHHHHSSS
T ss_pred --c---cCcEEEEEecCccccccccccccccCCcchhhHHHhHHHHHHHhhccCCCCCCHHHHHHHHHHHHhCCC
Confidence 5 79999999999999998654321 11111111 111222337899999999999997653
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-36 Score=299.09 Aligned_cols=237 Identities=24% Similarity=0.273 Sum_probs=192.4
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
..++||++|||||++|||+++++.|+++|++|++++|+... ++..+...+. .+.++.||++|.++++++++
T Consensus 209 ~~l~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~~~-~~l~~~~~~~--------~~~~~~~Dvtd~~~v~~~~~ 279 (454)
T 3u0b_A 209 KPLDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGAA-EDLKRVADKV--------GGTALTLDVTADDAVDKITA 279 (454)
T ss_dssp STTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGGGH-HHHHHHHHHH--------TCEEEECCTTSTTHHHHHHH
T ss_pred cCCCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCccH-HHHHHHHHHc--------CCeEEEEecCCHHHHHHHHH
Confidence 35789999999999999999999999999999999997532 2222222221 24689999999999999999
Q ss_pred HHHhcCCC-eeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 92 EILDNESA-IHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 92 ~i~~~~g~-iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
++.+.++. +|++|||||+.... .+.+.++|+..+++|+.+++++++.+++.|.+++.++||++||.++..+.
T Consensus 280 ~~~~~~g~~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS~a~~~g~----- 354 (454)
T 3u0b_A 280 HVTEHHGGKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGIAGN----- 354 (454)
T ss_dssp HHHHHSTTCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECCHHHHHCC-----
T ss_pred HHHHHcCCCceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeChHhCCCC-----
Confidence 99998876 99999999987643 67899999999999999999999999999887778999999999998885
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
+++..|++||+++++|+++++.|++
T Consensus 355 ---------~g~~~YaasKaal~~l~~~la~e~~---------------------------------------------- 379 (454)
T 3u0b_A 355 ---------RGQTNYATTKAGMIGLAEALAPVLA---------------------------------------------- 379 (454)
T ss_dssp ---------TTCHHHHHHHHHHHHHHHHHHHHHH----------------------------------------------
T ss_pred ---------CCCHHHHHHHHHHHHHHHHHHHHhh----------------------------------------------
Confidence 7889999999999999999999998
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
. .||+||+|+||+|+|++.+..............++++ ..+|+|+|++++||+++ .++++||+.|...+
T Consensus 380 ----~---~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~l~r--~g~pedvA~~v~fL~s~-~a~~itG~~i~vdG 448 (454)
T 3u0b_A 380 ----D---KGITINAVAPGFIETKMTEAIPLATREVGRRLNSLFQ--GGQPVDVAELIAYFASP-ASNAVTGNTIRVCG 448 (454)
T ss_dssp ----T---TTCEEEEEEECSBCC----------CHHHHHSBTTSS--CBCHHHHHHHHHHHHCG-GGTTCCSCEEEESS
T ss_pred ----h---cCcEEEEEEcCcccChhhhhcchhhHHHHHhhccccC--CCCHHHHHHHHHHHhCC-ccCCCCCcEEEECC
Confidence 6 7999999999999999987654322211111233444 78999999999999965 67899999987654
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-36 Score=290.41 Aligned_cols=230 Identities=13% Similarity=0.001 Sum_probs=191.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHH-CCCEEEEEecChhHHH------------HHHHHHHHhhcccCCCCeEEEEEccC
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAK-RGARVIMACRSLEKAE------------TAADDIRTSLKDVKDAGEVVIRQLDL 80 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~-~G~~Vil~~R~~~~l~------------~~~~~l~~~~~~~~~~~~v~~i~~Dl 80 (330)
-.+|++|||||++|||+++++.|++ .|++|++++|+.+..+ ...+.+.+ .+.++..+.+|+
T Consensus 45 ~~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~------~G~~a~~i~~Dv 118 (405)
T 3zu3_A 45 NGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQ------KGLYAKSINGDA 118 (405)
T ss_dssp TCCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHH------TTCCEEEEESCT
T ss_pred CCCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHHh------cCCceEEEECCC
Confidence 5689999999999999999999999 9999999998754322 12223333 366888999999
Q ss_pred CCHHHHHHHHHHHHhcCCCeeEEEEcCCCC---------------CCC---------------------CCCChhhHHHh
Q psy13409 81 SSLKSVRKCAQEILDNESAIHLLINNAGVM---------------MCP---------------------RQLTEDGYELQ 124 (330)
Q Consensus 81 s~~~si~~l~~~i~~~~g~iDvlInnAG~~---------------~~~---------------------~~~~~~~~~~~ 124 (330)
+++++++++++.+.+.+|++|+||||||.. .+. .+.+.++|+++
T Consensus 119 td~~~v~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~ 198 (405)
T 3zu3_A 119 FSDEIKQLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDST 198 (405)
T ss_dssp TSHHHHHHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHH
Confidence 999999999999999999999999999974 122 45789999999
Q ss_pred HHHHHHHHH-HHHHHHHHH-HhhhCCCeEEEEcCCCcccCCCCCcccccccccCCCcc--hhhHHhHHHHHHHHHHHHHH
Q psy13409 125 FATNHLGHY-LFTLLLLPR-IIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSAT--GAYGRSKLANILFTTELAKR 200 (330)
Q Consensus 125 l~vN~~g~~-~l~~~~l~~-l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~~~~~--~~Y~asK~a~~~~~~~la~~ 200 (330)
+++|..+.| .+++++.+. |++ ++|+||++||..+..+. +.+ ++|++||+|+++|+++||.|
T Consensus 199 v~Vn~~~~~~~~~~~~~~~~m~~-~gG~IVniSSi~~~~~~--------------p~~~~~aY~AaKaal~~ltrsLA~E 263 (405)
T 3zu3_A 199 VAVMGGEDWQMWIDALLDAGVLA-EGAQTTAFTYLGEKITH--------------DIYWNGSIGAAKKDLDQKVLAIRES 263 (405)
T ss_dssp HHHHSSHHHHHHHHHHHHHTCEE-EEEEEEEEECCCCGGGT--------------TTTTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhchhHHHHHHHHHHHHhhhh-CCcEEEEEeCchhhCcC--------------CCccchHHHHHHHHHHHHHHHHHHH
Confidence 999999998 777777654 443 46999999999987774 555 89999999999999999999
Q ss_pred hcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCCCCCC-ceeEEEeeCcccccCcccccCC
Q psy13409 201 LQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGANIT-NVNTYAVHPGVVDTELSRHFDS 279 (330)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~v~~v~pG~v~t~~~~~~~~ 279 (330)
++ + . |||||+|+||+|+|+++...+.
T Consensus 264 la--------------------------------------------------~---~~GIRVNaVaPG~i~T~~s~~ip~ 290 (405)
T 3zu3_A 264 LA--------------------------------------------------A---HGGGDARVSVLKAVVSQASSAIPM 290 (405)
T ss_dssp HH--------------------------------------------------T---TTSCEEEEEECCCCCCHHHHTSTT
T ss_pred hC--------------------------------------------------c---ccCeEEEEEEeCCCcCchhhcCCC
Confidence 99 6 8 9999999999999999987765
Q ss_pred CchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceec
Q psy13409 280 IIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYY 323 (330)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~ 323 (330)
.+........++++ .++|||+|+.+.||+++ +++|..+
T Consensus 291 ~p~y~~~l~~~mkr--~G~~Ed~a~~i~~L~sd----~l~~~~~ 328 (405)
T 3zu3_A 291 MPLYLSLLFKVMKE--KGTHEGCIEQVYSLYKD----SLCGDSP 328 (405)
T ss_dssp HHHHHHHHHHHHHH--HTCCCCHHHHHHHHHHH----TTSSSCC
T ss_pred CcHHHHHHHHHHhc--CCCcHHHHHHHHHHHhc----cccCCCC
Confidence 44444555677888 89999999999999966 5667543
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-36 Score=270.73 Aligned_cols=236 Identities=22% Similarity=0.301 Sum_probs=198.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEE-ecChhHHHHHHHHHHHhhcccCCCCeEEE-EEccCCCHHHHHHHHHHH
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMA-CRSLEKAETAADDIRTSLKDVKDAGEVVI-RQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~-~R~~~~l~~~~~~l~~~~~~~~~~~~v~~-i~~Dls~~~si~~l~~~i 93 (330)
+|+++||||+||||++++++|+++|++|+++ +|+.+++++..+++... +.++.. +.+|+++.++++++++++
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRR------GSPLVAVLGANLLEAEAATALVHQA 74 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHHHHHHHT------TCSCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc------CCceEEEEeccCCCHHHHHHHHHHH
Confidence 5799999999999999999999999999998 89988888777776552 445666 999999999999999999
Q ss_pred HhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccc
Q psy13409 94 LDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDI 171 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~ 171 (330)
.+.++++|++|||||..... .+.+.+++++.+++|+.+++.+++.+++.|.+++.++||++||..+..+.
T Consensus 75 ~~~~~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~-------- 146 (245)
T 2ph3_A 75 AEVLGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKARFGRIVNITSVVGILGN-------- 146 (245)
T ss_dssp HHHHTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC--------
T ss_pred HHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCEEEEEeChhhccCC--------
Confidence 99899999999999986532 56788999999999999999999999999988878999999998877764
Q ss_pred ccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCC
Q psy13409 172 NLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHP 251 (330)
Q Consensus 172 ~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (330)
++...|++||++++.++++++.|+.
T Consensus 147 ------~~~~~Y~~sK~a~~~~~~~la~e~~------------------------------------------------- 171 (245)
T 2ph3_A 147 ------PGQANYVASKAGLIGFTRAVAKEYA------------------------------------------------- 171 (245)
T ss_dssp ------SSBHHHHHHHHHHHHHHHHHHHHHG-------------------------------------------------
T ss_pred ------CCCcchHHHHHHHHHHHHHHHHHHH-------------------------------------------------
Confidence 6678999999999999999999998
Q ss_pred CCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 252 PGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 252 ~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
. .||++++|+||+|+|++.+.... .............++.+|+|+|+.+++++++ ..++++|++|...+
T Consensus 172 -~---~gi~v~~v~Pg~v~t~~~~~~~~--~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~-~~~~~~G~~~~v~g 240 (245)
T 2ph3_A 172 -Q---RGITVNAVAPGFIETEMTERLPQ--EVKEAYLKQIPAGRFGRPEEVAEAVAFLVSE-KAGYITGQTLCVDG 240 (245)
T ss_dssp -G---GTEEEEEEEECSBCCHHHHTSCH--HHHHHHHHTCTTCSCBCHHHHHHHHHHHTSG-GGTTCCSCEEEEST
T ss_pred -H---cCeEEEEEEEEeecCcchhhcCH--HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCc-ccccccCCEEEECC
Confidence 5 79999999999999998765321 1111122222223378999999999999866 45689999887544
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-36 Score=274.19 Aligned_cols=231 Identities=23% Similarity=0.266 Sum_probs=186.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCE-EEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCH-HHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGAR-VIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSL-KSVRKCA 90 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~-Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~-~si~~l~ 90 (330)
+++||+++||||++|||++++++|+++|++ |++++|+... +..+++.+.. .+.++.++.+|++|+ +++++++
T Consensus 2 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~--~~~~~l~~~~----~~~~~~~~~~D~~~~~~~~~~~~ 75 (254)
T 1sby_A 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENP--TALAELKAIN----PKVNITFHTYDVTVPVAESKKLL 75 (254)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCH--HHHHHHHHHC----TTSEEEEEECCTTSCHHHHHHHH
T ss_pred CCCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchH--HHHHHHHHhC----CCceEEEEEEecCCChHHHHHHH
Confidence 578999999999999999999999999996 9999998642 2233333321 246789999999998 9999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC---CCeEEEEcCCCcccCCCCCc
Q psy13409 91 QEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA---PARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~---~g~IV~iSS~~~~~~~~~~~ 167 (330)
+++.+.++++|++|||||.. +.+++++.+++|+.+++++++.++|.|.+++ .|+||++||.++..+.
T Consensus 76 ~~~~~~~g~id~lv~~Ag~~------~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---- 145 (254)
T 1sby_A 76 KKIFDQLKTVDILINGAGIL------DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAI---- 145 (254)
T ss_dssp HHHHHHHSCCCEEEECCCCC------CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCC----
T ss_pred HHHHHhcCCCCEEEECCccC------CHHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhccCC----
Confidence 99999999999999999975 4678999999999999999999999997764 5899999999887664
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
+....|++||++++.|+++++.++.
T Consensus 146 ----------~~~~~Y~~sK~a~~~~~~~la~~~~--------------------------------------------- 170 (254)
T 1sby_A 146 ----------HQVPVYSASKAAVVSFTNSLAKLAP--------------------------------------------- 170 (254)
T ss_dssp ----------TTSHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------
T ss_pred ----------CCchHHHHHHHHHHHHHHHHHHHhc---------------------------------------------
Confidence 6778999999999999999999987
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
. .||+||+|+||+|+|++.+.........+..........+.+|+|+|+.++++++ .+++|++|...
T Consensus 171 -----~---~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~i~~~~~----~~~~G~~~~v~ 237 (254)
T 1sby_A 171 -----I---TGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLLSHPTQTSEQCGQNFVKAIE----ANKNGAIWKLD 237 (254)
T ss_dssp -----H---HSEEEEEEEECSEESHHHHSCCCGGGSCTTHHHHHTTSCCEEHHHHHHHHHHHHH----HCCTTCEEEEE
T ss_pred -----c---CCeEEEEEecCCccCccccccchhhhhhHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCCCCCEEEEe
Confidence 4 6999999999999999876532211001111112222235689999999999984 36789888654
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=272.58 Aligned_cols=241 Identities=22% Similarity=0.279 Sum_probs=195.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
++++|++|||||++|||++++++|+++|++|++++|+.++++++.+++.... ...++.++.+|+++++++++++++
T Consensus 29 ~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~v~~~~~~ 104 (279)
T 1xg5_A 29 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAG----YPGTLIPYRCDLSNEEDILSMFSA 104 (279)
T ss_dssp GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT----CSSEEEEEECCTTCHHHHHHHHHH
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcC----CCceEEEEEecCCCHHHHHHHHHH
Confidence 5899999999999999999999999999999999999988888877776531 235788999999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCC--CeEEEEcCCCcccCCCCCcc
Q psy13409 93 ILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAP--ARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~--g~IV~iSS~~~~~~~~~~~~ 168 (330)
+.+.++++|+||||||..... .+.+.++|++.+++|+.+++.+++.+++.|.+++. ++||++||..+....
T Consensus 105 ~~~~~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~~~~~~~----- 179 (279)
T 1xg5_A 105 IRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVL----- 179 (279)
T ss_dssp HHHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCC-----
T ss_pred HHHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcChhhcccC-----
Confidence 999899999999999976532 56788999999999999999999999999988763 899999998875221
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
+.+....|+++|++++.|+++++.|++..
T Consensus 180 -------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~-------------------------------------------- 208 (279)
T 1xg5_A 180 -------PLSVTHFYSATKYAVTALTEGLRQELREA-------------------------------------------- 208 (279)
T ss_dssp -------SCGGGHHHHHHHHHHHHHHHHHHHHHHHT--------------------------------------------
T ss_pred -------CCCCCchhHHHHHHHHHHHHHHHHHHhhc--------------------------------------------
Confidence 12567899999999999999999998610
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceec
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYY 323 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~ 323 (330)
. .+|++|+|+||+|+|++.......... .........++.+|+|+|++++++++++ ..+.+|++.
T Consensus 209 ----~---~~i~v~~v~Pg~v~t~~~~~~~~~~~~--~~~~~~~~~~~~~~~dvA~~i~~l~~~~-~~~~~g~i~ 273 (279)
T 1xg5_A 209 ----Q---THIRATCISPGVVETQFAFKLHDKDPE--KAAATYEQMKCLKPEDVAEAVIYVLSTP-AHIQIGDIQ 273 (279)
T ss_dssp ----T---CCCEEEEEEESCBCSSHHHHHTTTCHH--HHHHHHC---CBCHHHHHHHHHHHHHSC-TTEEEEEEE
T ss_pred ----C---CCeEEEEEecCcccchhhhhhcccChh--HHhhhcccccCCCHHHHHHHHHHHhcCC-cceEeeeEE
Confidence 2 699999999999999985432221111 1111112223789999999999999775 457777653
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=270.17 Aligned_cols=212 Identities=21% Similarity=0.128 Sum_probs=177.0
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
+++++|++|||||++|||++++++|+++|++|++++|+.+ +|++|+++++++++
T Consensus 2 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~--------------------------~D~~~~~~v~~~~~ 55 (223)
T 3uce_A 2 MGSDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG--------------------------LDISDEKSVYHYFE 55 (223)
T ss_dssp ---CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT--------------------------CCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc--------------------------cCCCCHHHHHHHHH
Confidence 4689999999999999999999999999999999998753 89999999999987
Q ss_pred HHHhcCCCeeEEEEcCCCCC---CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 92 EILDNESAIHLLINNAGVMM---CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~---~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
++ +++|++|||||... +..+.+.++|++.+++|+.+++++++.++|.|.+ +|+||++||..+..+.
T Consensus 56 ~~----g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~--~g~iv~~sS~~~~~~~----- 124 (223)
T 3uce_A 56 TI----GAFDHLIVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQ--GGSITLTSGMLSRKVV----- 124 (223)
T ss_dssp HH----CSEEEEEECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEE--EEEEEEECCGGGTSCC-----
T ss_pred Hh----CCCCEEEECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccC--CeEEEEecchhhccCC-----
Confidence 65 88999999999763 2367899999999999999999999999999865 4899999999887764
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
+....|++||+|+++|+++++.|++
T Consensus 125 ---------~~~~~Y~asK~a~~~~~~~la~e~~---------------------------------------------- 149 (223)
T 3uce_A 125 ---------ANTYVKAAINAAIEATTKVLAKELA---------------------------------------------- 149 (223)
T ss_dssp ---------TTCHHHHHHHHHHHHHHHHHHHHHT----------------------------------------------
T ss_pred ---------CCchHHHHHHHHHHHHHHHHHHhhc----------------------------------------------
Confidence 7788999999999999999999997
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCch--hhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIP--GTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+ |+||+|+||+|+|++.+....... ..+.........++.+|+|+|++++|++++ +++||+.|...
T Consensus 150 --------~-i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~~~~l~~~---~~~tG~~i~vd 217 (223)
T 3uce_A 150 --------P-IRVNAISPGLTKTEAYKGMNADDRDAMYQRTQSHLPVGKVGEASDIAMAYLFAIQN---SYMTGTVIDVD 217 (223)
T ss_dssp --------T-SEEEEEEECSBCSGGGTTSCHHHHHHHHHHHHHHSTTCSCBCHHHHHHHHHHHHHC---TTCCSCEEEES
T ss_pred --------C-cEEEEEEeCCCcchhhhhcchhhHHHHHHHHhhcCCCCCccCHHHHHHHHHHHccC---CCCCCcEEEec
Confidence 5 999999999999999876543211 111122222233388999999999999963 68999998754
Q ss_pred C
Q psy13409 327 D 327 (330)
Q Consensus 327 ~ 327 (330)
+
T Consensus 218 g 218 (223)
T 3uce_A 218 G 218 (223)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-35 Score=265.81 Aligned_cols=234 Identities=21% Similarity=0.262 Sum_probs=190.1
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
+.++++|++|||||+||||++++++|+++|++|++++|+.+++++..+++ ..+.++.+|+++++++++++
T Consensus 2 ~~~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~D~~~~~~~~~~~ 71 (244)
T 1cyd_A 2 KLNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC----------PGIEPVCVDLGDWDATEKAL 71 (244)
T ss_dssp -CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS----------TTCEEEECCTTCHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc----------cCCCcEEecCCCHHHHHHHH
Confidence 35689999999999999999999999999999999999987766554321 13456799999999988877
Q ss_pred HHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCCc
Q psy13409 91 QEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~~ 167 (330)
+ .++++|++|||||.... ..+.+.+++++.+++|+.+++++++.+++.|.+++ .++||++||..+..+.
T Consensus 72 ~----~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~---- 143 (244)
T 1cyd_A 72 G----GIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTF---- 143 (244)
T ss_dssp T----TCCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC----
T ss_pred H----HcCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhcCCC----
Confidence 6 56889999999997653 25678899999999999999999999999998876 6899999998876653
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
+....|++||++++.++++++.+++
T Consensus 144 ----------~~~~~Y~~sK~a~~~~~~~~a~~~~--------------------------------------------- 168 (244)
T 1cyd_A 144 ----------PNLITYSSTKGAMTMLTKAMAMELG--------------------------------------------- 168 (244)
T ss_dssp ----------TTBHHHHHHHHHHHHHHHHHHHHHG---------------------------------------------
T ss_pred ----------CCcchhHHHHHHHHHHHHHHHHHhh---------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
. .||++++|+||+|.|++.....................++.+|+|+|+++++++++ .+++++|+.+...
T Consensus 169 -----~---~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~-~~~~~~G~~~~v~ 238 (244)
T 1cyd_A 169 -----P---HKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHPLRKFAEVEDVVNSILFLLSD-RSASTSGGGILVD 238 (244)
T ss_dssp -----G---GTEEEEEEEECCBTTHHHHHHTCCHHHHHHHHHHSTTSSCBCHHHHHHHHHHHHSG-GGTTCCSSEEEES
T ss_pred -----h---cCeEEEEEecCcccCccccccccCHHHHHHHHhcCCccCCCCHHHHHHHHHHHhCc-hhhcccCCEEEEC
Confidence 5 79999999999999998653322222212222222223378999999999999965 4568999988654
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=295.65 Aligned_cols=225 Identities=13% Similarity=0.002 Sum_probs=186.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHH-CCCEEEEEecChhHHHH------------HHHHHHHhhcccCCCCeEEEEEccC
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAK-RGARVIMACRSLEKAET------------AADDIRTSLKDVKDAGEVVIRQLDL 80 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~-~G~~Vil~~R~~~~l~~------------~~~~l~~~~~~~~~~~~v~~i~~Dl 80 (330)
..+|++|||||++|||+++++.|++ .|++|++++|+.+.+++ ..+.+++ .+.++..+.+|+
T Consensus 59 ~~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~------~G~~a~~i~~Dv 132 (422)
T 3s8m_A 59 DGPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKA------AGLYSKSINGDA 132 (422)
T ss_dssp SSCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHH------TTCCEEEEESCT
T ss_pred cCCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHHh------cCCcEEEEEecC
Confidence 3599999999999999999999999 99999999998654321 2234433 367889999999
Q ss_pred CCHHHHHHHHHHHHhcC-CCeeEEEEcCCCC---------------CCC---------------------CCCChhhHHH
Q psy13409 81 SSLKSVRKCAQEILDNE-SAIHLLINNAGVM---------------MCP---------------------RQLTEDGYEL 123 (330)
Q Consensus 81 s~~~si~~l~~~i~~~~-g~iDvlInnAG~~---------------~~~---------------------~~~~~~~~~~ 123 (330)
+++++++++++.+.+.+ |++|+||||||.. .+. .+.+.++|+.
T Consensus 133 td~~~v~~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~ 212 (422)
T 3s8m_A 133 FSDAARAQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIED 212 (422)
T ss_dssp TSHHHHHHHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHH
Confidence 99999999999999999 9999999999972 111 2468999999
Q ss_pred hHHHHHHHHH-HHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccccCCCcc--hhhHHhHHHHHHHHHHHHHH
Q psy13409 124 QFATNHLGHY-LFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSAT--GAYGRSKLANILFTTELAKR 200 (330)
Q Consensus 124 ~l~vN~~g~~-~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~~~~~--~~Y~asK~a~~~~~~~la~~ 200 (330)
++++|..+.| .+++.+++.+...++|+||++||.++..+. +.+ ++|++||+|+++|+++||.|
T Consensus 213 ~v~Vn~~~~~~~~~~a~~~~~m~~~gG~IVniSSi~g~~~~--------------p~~~~~aY~ASKaAl~~lTrsLA~E 278 (422)
T 3s8m_A 213 TITVMGGQDWELWIDALEGAGVLADGARSVAFSYIGTEITW--------------PIYWHGALGKAKVDLDRTAQRLNAR 278 (422)
T ss_dssp HHHHHSSHHHHHHHHHHHHTTCEEEEEEEEEEEECCCGGGH--------------HHHTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhchhHHHHHHHHHHHHHHhhCCCEEEEEeCchhhccC--------------CCccchHHHHHHHHHHHHHHHHHHH
Confidence 9999999987 778887764333346999999999987763 455 89999999999999999999
Q ss_pred hcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCC
Q psy13409 201 LQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSI 280 (330)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~ 280 (330)
++ + .|||||+|+||+|+|+++...+..
T Consensus 279 la--------------------------------------------------~---~GIRVNaVaPG~i~T~~~~~ip~~ 305 (422)
T 3s8m_A 279 LA--------------------------------------------------K---HGGGANVAVLKSVVTQASAAIPVM 305 (422)
T ss_dssp HH--------------------------------------------------T---TTCEEEEEEECCCCCTTGGGSTHH
T ss_pred hC--------------------------------------------------c---cCEEEEEEEcCCCcChhhhcCCCC
Confidence 99 6 899999999999999999876544
Q ss_pred chhhHHHHHHhhhhhccChHHHHHHHHHhhccc
Q psy13409 281 IPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDK 313 (330)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~ 313 (330)
+........++++ .++|||||+.+.||+++.
T Consensus 306 ~~~~~~~~~~m~r--~G~pEdva~~v~~L~sd~ 336 (422)
T 3s8m_A 306 PLYISMVYKIMKE--KGLHEGTIEQLDRLFRER 336 (422)
T ss_dssp HHHHHHHHHHHHH--TTCCCCHHHHHHHHHHHT
T ss_pred hHHHHHHHhhhcC--CcChHHHHHHHHHHhcch
Confidence 4333444567888 899999999999999774
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-36 Score=306.38 Aligned_cols=225 Identities=25% Similarity=0.345 Sum_probs=190.5
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh---------hHHHHHHHHHHHhhcccCCCCeEEEEEccCC
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL---------EKAETAADDIRTSLKDVKDAGEVVIRQLDLS 81 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~---------~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls 81 (330)
.++++||++|||||++|||+++|+.|+++|++|++++|+. +.++++.+++... +.+. .+|++
T Consensus 3 ~~~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~------g~~~---~~d~~ 73 (604)
T 2et6_A 3 PVDFKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKN------GGVA---VADYN 73 (604)
T ss_dssp CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHHHHHT------TCEE---EEECC
T ss_pred CCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHhc------CCeE---EEEcC
Confidence 3568999999999999999999999999999999998765 5667777777542 3333 36888
Q ss_pred CHHHHHHHHHHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCc
Q psy13409 82 SLKSVRKCAQEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAH 159 (330)
Q Consensus 82 ~~~si~~l~~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~ 159 (330)
|.++++++++++.+.+|++|+||||||+... ..+++.++|+.++++|+.|+++++++++|+|++++.|+||++||.++
T Consensus 74 d~~~~~~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G~IVnisS~ag 153 (604)
T 2et6_A 74 NVLDGDKIVETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAG 153 (604)
T ss_dssp CTTCHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCHHH
Confidence 8888999999999999999999999998653 36789999999999999999999999999999888899999999998
Q ss_pred ccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCC
Q psy13409 160 TWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTP 239 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (330)
..+. +....|++||+|+.+|+++||.|++
T Consensus 154 ~~~~--------------~~~~~Y~asKaal~~lt~~la~El~------------------------------------- 182 (604)
T 2et6_A 154 LYGN--------------FGQANYASAKSALLGFAETLAKEGA------------------------------------- 182 (604)
T ss_dssp HHCC--------------TTBHHHHHHHHHHHHHHHHHHHHHG-------------------------------------
T ss_pred cCCC--------------CCchHHHHHHHHHHHHHHHHHHHhC-------------------------------------
Confidence 8875 6788999999999999999999999
Q ss_pred CcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccC
Q psy13409 240 TNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERET 319 (330)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~ 319 (330)
+ .|||||+|+|| ++|++...... +. ... ..+|+|+|+.++||+++. +++|
T Consensus 183 -------------~---~gIrVn~v~Pg-~~T~m~~~~~~-----~~----~~~--~~~pe~vA~~v~~L~s~~--~~it 232 (604)
T 2et6_A 183 -------------K---YNIKANAIAPL-ARSRMTESIMP-----PP----MLE--KLGPEKVAPLVLYLSSAE--NELT 232 (604)
T ss_dssp -------------G---GTEEEEEEEEC-CCCHHHHTTSC-----HH----HHT--TCSHHHHHHHHHHHTSSS--CCCC
T ss_pred -------------c---cCeEEEEEccC-CcCccccccCC-----hh----hhc--cCCHHHHHHHHHHHhCCc--ccCC
Confidence 5 89999999998 68987654321 00 111 468999999999999764 6999
Q ss_pred ceeccc
Q psy13409 320 GLYYAK 325 (330)
Q Consensus 320 G~~~~~ 325 (330)
|+.|..
T Consensus 233 G~~~~v 238 (604)
T 2et6_A 233 GQFFEV 238 (604)
T ss_dssp SCEEEE
T ss_pred CCEEEE
Confidence 998864
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-35 Score=263.26 Aligned_cols=220 Identities=23% Similarity=0.248 Sum_probs=180.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
.++|++|||||+||||++++++|+++|++|++++|+.+++++..+++ .++.++.+|++++++++++++.+
T Consensus 3 ~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~D~~~~~~~~~~~~~~ 72 (234)
T 2ehd_A 3 GMKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAEL----------EGALPLPGDVREEGDWARAVAAM 72 (234)
T ss_dssp -CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS----------TTCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----------hhceEEEecCCCHHHHHHHHHHH
Confidence 35799999999999999999999999999999999987766554432 15788999999999999999999
Q ss_pred HhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccc
Q psy13409 94 LDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDI 171 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~ 171 (330)
.+.++++|++|||||.... ..+.+.++++..+++|+.+++.+++.+++.|.+++.++||++||..+..+.
T Consensus 73 ~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~-------- 144 (234)
T 2ehd_A 73 EEAFGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGGGTIVNVGSLAGKNPF-------- 144 (234)
T ss_dssp HHHHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCTTTTSCC--------
T ss_pred HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEECCchhcCCC--------
Confidence 9989999999999997643 256788999999999999999999999999988878999999998876653
Q ss_pred ccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCC
Q psy13409 172 NLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHP 251 (330)
Q Consensus 172 ~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (330)
++...|+++|++++.++++++.|++
T Consensus 145 ------~~~~~Y~~sK~a~~~~~~~la~e~~------------------------------------------------- 169 (234)
T 2ehd_A 145 ------KGGAAYNASKFGLLGLAGAAMLDLR------------------------------------------------- 169 (234)
T ss_dssp ------TTCHHHHHHHHHHHHHHHHHHHHHG-------------------------------------------------
T ss_pred ------CCCchhhHHHHHHHHHHHHHHHHHh-------------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred CCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecc
Q psy13409 252 PGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYA 324 (330)
Q Consensus 252 ~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~ 324 (330)
. .||++++|+||+|+|++...... . . . ..+|+|+|+.++++++++ +.+++|+.+-
T Consensus 170 -~---~gi~v~~v~Pg~v~t~~~~~~~~-----~-~-----~--~~~~~dvA~~~~~l~~~~-~~~~~g~~~~ 224 (234)
T 2ehd_A 170 -E---ANVRVVNVLPGSVDTGFAGNTPG-----Q-A-----W--KLKPEDVAQAVLFALEMP-GHAMVSEIEL 224 (234)
T ss_dssp -G---GTEEEEEEECC-----------------------------CCHHHHHHHHHHHHHSC-CSSCCCEEEC
T ss_pred -h---cCcEEEEEEeCCCcCCccccccc-----c-c-----C--CCCHHHHHHHHHHHhCCC-cccccceEEE
Confidence 5 79999999999999998754211 0 0 0 469999999999999764 5689998754
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-35 Score=279.45 Aligned_cols=225 Identities=20% Similarity=0.324 Sum_probs=191.2
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEe---------cChhHHHHHHHHHHHhhcccCCCCeEEEEEccCC
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMAC---------RSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLS 81 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~---------R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls 81 (330)
.++++||++|||||++|||+++++.|+++|++|++++ |+.+++++..+++... +.. ..+|++
T Consensus 4 ~~~l~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~------~~~---~~~D~~ 74 (319)
T 1gz6_A 4 PLRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRR------GGK---AVANYD 74 (319)
T ss_dssp CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHT------TCE---EEEECC
T ss_pred CCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhh------CCe---EEEeCC
Confidence 3578999999999999999999999999999999964 5677777777777653 222 248999
Q ss_pred CHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCc
Q psy13409 82 SLKSVRKCAQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAH 159 (330)
Q Consensus 82 ~~~si~~l~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~ 159 (330)
+.++++++++++.+.++++|+||||||+.... .+.+.++|+..+++|+.+++++++.++|.|.+++.|+||++||.++
T Consensus 75 ~~~~~~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~grIV~vsS~~~ 154 (319)
T 1gz6_A 75 SVEAGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASG 154 (319)
T ss_dssp CGGGHHHHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhh
Confidence 99999999999999999999999999987543 5678899999999999999999999999999888899999999988
Q ss_pred ccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCC
Q psy13409 160 TWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTP 239 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (330)
..+. ++...|++||+|+++|+++|+.|++
T Consensus 155 ~~~~--------------~~~~~Y~aSK~a~~~~~~~la~el~------------------------------------- 183 (319)
T 1gz6_A 155 IYGN--------------FGQANYSAAKLGLLGLANTLVIEGR------------------------------------- 183 (319)
T ss_dssp HHCC--------------TTCHHHHHHHHHHHHHHHHHHHHTG-------------------------------------
T ss_pred ccCC--------------CCCHHHHHHHHHHHHHHHHHHHHhc-------------------------------------
Confidence 7775 5778999999999999999999998
Q ss_pred CcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccC
Q psy13409 240 TNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERET 319 (330)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~ 319 (330)
+ .||+||+|+||++ |++...... .. ... ..+|+|+|++++||++++ ++++
T Consensus 184 -------------~---~gI~vn~v~PG~~-t~~~~~~~~-----~~----~~~--~~~p~dvA~~~~~l~s~~--~~~t 233 (319)
T 1gz6_A 184 -------------K---NNIHCNTIAPNAG-SRMTETVMP-----ED----LVE--ALKPEYVAPLVLWLCHES--CEEN 233 (319)
T ss_dssp -------------G---GTEEEEEEEEECC-STTTGGGSC-----HH----HHH--HSCGGGTHHHHHHHTSTT--CCCC
T ss_pred -------------c---cCEEEEEEeCCCc-cccccccCC-----hh----hhc--cCCHHHHHHHHHHHhCch--hhcC
Confidence 5 7999999999998 887654221 11 111 469999999999999763 4789
Q ss_pred ceeccc
Q psy13409 320 GLYYAK 325 (330)
Q Consensus 320 G~~~~~ 325 (330)
|++|..
T Consensus 234 G~~~~v 239 (319)
T 1gz6_A 234 GGLFEV 239 (319)
T ss_dssp SCEEEE
T ss_pred CCEEEE
Confidence 998853
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=270.71 Aligned_cols=227 Identities=19% Similarity=0.215 Sum_probs=183.1
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
....++||++|||||++|||++++++|+++|++|++++|+.+.++ ++ ..+.++ +|+ .++++++
T Consensus 13 ~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~----~~----------~~~~~~-~D~--~~~~~~~ 75 (249)
T 1o5i_A 13 MELGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLK----RS----------GHRYVV-CDL--RKDLDLL 75 (249)
T ss_dssp ---CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH----HT----------CSEEEE-CCT--TTCHHHH
T ss_pred HHhccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHH----hh----------CCeEEE-eeH--HHHHHHH
Confidence 345689999999999999999999999999999999999973321 11 246677 999 5667777
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCc
Q psy13409 90 AQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~ 167 (330)
++.+. ++|++|||||..... .+.+.++|++.+++|+.+++.+++.++|.|.+++.|+||++||..+..+.
T Consensus 76 ~~~~~----~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---- 147 (249)
T 1o5i_A 76 FEKVK----EVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISPI---- 147 (249)
T ss_dssp HHHSC----CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC----
T ss_pred HHHhc----CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchHhcCCC----
Confidence 76652 799999999976532 57788999999999999999999999999998888999999999887664
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
++...|++||++++.|+++++.|++
T Consensus 148 ----------~~~~~Y~~sK~a~~~~~~~la~e~~--------------------------------------------- 172 (249)
T 1o5i_A 148 ----------ENLYTSNSARMALTGFLKTLSFEVA--------------------------------------------- 172 (249)
T ss_dssp ----------TTBHHHHHHHHHHHHHHHHHHHHHG---------------------------------------------
T ss_pred ----------CCCchHHHHHHHHHHHHHHHHHHhh---------------------------------------------
Confidence 6788999999999999999999998
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhH-HHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTA-WLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+ .||+||+|+||+|+|++...... ...+ .........++.+|+|+|++++||+++ .++++||++|...
T Consensus 173 -----~---~gi~v~~v~Pg~v~t~~~~~~~~--~~~~~~~~~~~p~~~~~~~~dvA~~i~~l~s~-~~~~~tG~~~~vd 241 (249)
T 1o5i_A 173 -----P---YGITVNCVAPGWTETERVKELLS--EEKKKQVESQIPMRRMAKPEEIASVVAFLCSE-KASYLTGQTIVVD 241 (249)
T ss_dssp -----G---GTEEEEEEEECSBCCTTHHHHSC--HHHHHHHHTTSTTSSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEES
T ss_pred -----h---cCeEEEEEeeCCCccCcccccch--hhHHHHHHhcCCCCCCcCHHHHHHHHHHHcCc-cccCCCCCEEEEC
Confidence 5 79999999999999998754321 1111 121112222378999999999999965 4679999998765
Q ss_pred C
Q psy13409 327 D 327 (330)
Q Consensus 327 ~ 327 (330)
+
T Consensus 242 g 242 (249)
T 1o5i_A 242 G 242 (249)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-36 Score=271.93 Aligned_cols=221 Identities=12% Similarity=0.035 Sum_probs=185.9
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
...+..+|++|||||++|||++++++|+++|++|++++|+.+++. -..+.+|++|.++++++
T Consensus 16 ~~~~~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~------------------~~~~~~d~~d~~~v~~~ 77 (251)
T 3orf_A 16 PRGSHMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNA------------------DHSFTIKDSGEEEIKSV 77 (251)
T ss_dssp ------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTS------------------SEEEECSCSSHHHHHHH
T ss_pred ccccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccc------------------ccceEEEeCCHHHHHHH
Confidence 334567899999999999999999999999999999999976421 13578999999999999
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCC---CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCC
Q psy13409 90 AQEILDNESAIHLLINNAGVMMC---PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSM 166 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~---~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~ 166 (330)
++++.+.++++|++|||||.... ..+.+.+++++.+++|+.+++.+++.+++.|.+ +|+||++||..+..+.
T Consensus 78 ~~~~~~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~g~iv~isS~~~~~~~--- 152 (251)
T 3orf_A 78 IEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQ--GGLFVLTGASAALNRT--- 152 (251)
T ss_dssp HHHHHTTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEE--EEEEEEECCGGGGSCC---
T ss_pred HHHHHHHcCCCCEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhcc--CCEEEEEechhhccCC---
Confidence 99999999999999999998653 256778999999999999999999999999865 4899999999887774
Q ss_pred cccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccc
Q psy13409 167 HFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKN 246 (330)
Q Consensus 167 ~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (330)
+....|++||+|++.|+++++.|++..
T Consensus 153 -----------~~~~~Y~~sKaa~~~~~~~la~e~~~~------------------------------------------ 179 (251)
T 3orf_A 153 -----------SGMIAYGATKAATHHIIKDLASENGGL------------------------------------------ 179 (251)
T ss_dssp -----------TTBHHHHHHHHHHHHHHHHHTSTTSSS------------------------------------------
T ss_pred -----------CCCchhHHHHHHHHHHHHHHHHHhccc------------------------------------------
Confidence 778899999999999999999997410
Q ss_pred cccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceeccc
Q psy13409 247 VLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAK 325 (330)
Q Consensus 247 ~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~ 325 (330)
+ +||+||+|+||+|+|++.+...... +.++ +.+|+|+|+.+++|++++.+.++||+.|..
T Consensus 180 ------~---~gi~v~~v~PG~v~t~~~~~~~~~~--------~~~~--~~~~~dva~~i~~l~~~~~~~~~tG~~i~v 239 (251)
T 3orf_A 180 ------P---AGSTSLGILPVTLDTPTNRKYMSDA--------NFDD--WTPLSEVAEKLFEWSTNSDSRPTNGSLVKF 239 (251)
T ss_dssp ------C---TTCEEEEEEESCBCCHHHHHHCTTS--------CGGG--SBCHHHHHHHHHHHHHCGGGCCCTTCEEEE
T ss_pred ------C---CCcEEEEEecCcCcCcchhhhcccc--------cccc--cCCHHHHHHHHHHHhcCccccCCcceEEEE
Confidence 3 7999999999999999876554332 2233 789999999999999875678999998864
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-35 Score=269.16 Aligned_cols=241 Identities=22% Similarity=0.242 Sum_probs=198.1
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEec-ChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACR-SLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R-~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
.+++++|++|||||+||||++++++|+++|++|++++| +.+.+++..++++.. +.++.++.+|++|+++++++
T Consensus 16 ~~~~~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~~~~~~~ 89 (274)
T 1ja9_A 16 SKPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKL------GAQGVAIQADISKPSEVVAL 89 (274)
T ss_dssp CCTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT------TCCEEEEECCTTSHHHHHHH
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhc------CCcEEEEEecCCCHHHHHHH
Confidence 35689999999999999999999999999999999999 777777777777652 56789999999999999999
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcc-cCCCCC
Q psy13409 90 AQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHT-WGDGSM 166 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~-~~~~~~ 166 (330)
++++.+.++++|++|||||..... .+.+.+++++.+++|+.+++++++.+++.|. ++ ++||++||..+. .+.
T Consensus 90 ~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~-~~iv~~sS~~~~~~~~--- 164 (274)
T 1ja9_A 90 FDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCR-RG-GRIILTSSIAAVMTGI--- 164 (274)
T ss_dssp HHHHHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEE-EE-EEEEEECCGGGTCCSC---
T ss_pred HHHHHHHcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-hC-CEEEEEcChHhccCCC---
Confidence 999999999999999999986532 5678899999999999999999999999987 33 899999998876 443
Q ss_pred cccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccc
Q psy13409 167 HFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKN 246 (330)
Q Consensus 167 ~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (330)
+....|++||++++.++++++.|++
T Consensus 165 -----------~~~~~Y~~sK~a~~~~~~~~~~e~~-------------------------------------------- 189 (274)
T 1ja9_A 165 -----------PNHALYAGSKAAVEGFCRAFAVDCG-------------------------------------------- 189 (274)
T ss_dssp -----------CSCHHHHHHHHHHHHHHHHHHHHHG--------------------------------------------
T ss_pred -----------CCCchHHHHHHHHHHHHHHHHHHhh--------------------------------------------
Confidence 5678999999999999999999998
Q ss_pred cccCCCCCCCCceeEEEeeCcccccCcccccC---------CC--chhhHHHHHHhhhhhccChHHHHHHHHHhhccccc
Q psy13409 247 VLFHPPGANITNVNTYAVHPGVVDTELSRHFD---------SI--IPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKC 315 (330)
Q Consensus 247 ~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~---------~~--~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~ 315 (330)
. +||++++|+||+|.|++..... .. ..............++.+|+|+|+++++++++ ..
T Consensus 190 ------~---~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~i~~l~~~-~~ 259 (274)
T 1ja9_A 190 ------A---KGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANMNPLKRIGYPADIGRAVSALCQE-ES 259 (274)
T ss_dssp ------G---GTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHHTSTTSSCBCHHHHHHHHHHHHSG-GG
T ss_pred ------h---cCeEEEEEeeCcccccchhcccccccccccccCchHHHHHHHHhcCCCCCccCHHHHHHHHHHHhCc-cc
Confidence 5 7999999999999999865211 00 11111111111222378999999999999965 45
Q ss_pred cccCceecccCC
Q psy13409 316 ERETGLYYAKAD 327 (330)
Q Consensus 316 ~~~~G~~~~~~~ 327 (330)
.+++|+.|....
T Consensus 260 ~~~~G~~~~v~g 271 (274)
T 1ja9_A 260 EWINGQVIKLTG 271 (274)
T ss_dssp TTCCSCEEEEST
T ss_pred ccccCcEEEecC
Confidence 689999887543
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-35 Score=276.07 Aligned_cols=229 Identities=21% Similarity=0.237 Sum_probs=179.1
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecC-----hhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRS-----LEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVR 87 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~-----~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~ 87 (330)
++++|++|||||++|||++++++|+++|++|+++.|+ .+.++++.+.+... +.++.++.+|++|+++++
T Consensus 2 ~m~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~------~~~~~~~~~Dvtd~~~v~ 75 (324)
T 3u9l_A 2 VMSKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDN------DVDLRTLELDVQSQVSVD 75 (324)
T ss_dssp ---CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHH------TCCEEEEECCTTCHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhc------CCcEEEEEeecCCHHHHH
Confidence 4679999999999999999999999999999998876 44555555555442 568999999999999999
Q ss_pred HHHHHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCC
Q psy13409 88 KCAQEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGS 165 (330)
Q Consensus 88 ~l~~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~ 165 (330)
++++++.+.+|++|+||||||+... ..+.+.++|++++++|+.|+++++++++|.|++++.|+||++||.++..+.
T Consensus 76 ~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~~g~iV~isS~~~~~~~-- 153 (324)
T 3u9l_A 76 RAIDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQKHGLLIWISSSSSAGGT-- 153 (324)
T ss_dssp HHHHHHHHHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC--
T ss_pred HHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEecchhccCC--
Confidence 9999999999999999999998653 367899999999999999999999999999999888999999999876542
Q ss_pred CcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccc
Q psy13409 166 MHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCK 245 (330)
Q Consensus 166 ~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (330)
.+....|++||+|+++|+++++.|++
T Consensus 154 -----------~~~~~~Y~asKaa~~~~~~~la~el~------------------------------------------- 179 (324)
T 3u9l_A 154 -----------PPYLAPYFAAKAAMDAIAVQYARELS------------------------------------------- 179 (324)
T ss_dssp -----------CSSCHHHHHHHHHHHHHHHHHHHHHH-------------------------------------------
T ss_pred -----------CCcchhHHHHHHHHHHHHHHHHHHhh-------------------------------------------
Confidence 25678899999999999999999998
Q ss_pred ccccCCCCCCCCceeEEEeeCcccccCcccccCCC---chhhHHHH-------------HHhhh--hhccChHHHHHHHH
Q psy13409 246 NVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSI---IPGTAWLY-------------QRVGG--LFIKSPLQGAQTTL 307 (330)
Q Consensus 246 ~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~---~~~~~~~~-------------~~~~~--~~~~~~~e~a~~~~ 307 (330)
+ .||+||+|+||+|+|++....... ........ ..+.. ....+|+++|++++
T Consensus 180 -------~---~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~vA~aiv 249 (324)
T 3u9l_A 180 -------R---WGIETSIIVPGAFTSGTNHFAHSGVPDDHARQAEYEAGPNAGLGEEIKKAFAAIVPPDADVSLVADAIV 249 (324)
T ss_dssp -------T---TTEEEEEEEECCC---------CBCCSCHHHHHHHHHTTTTTHHHHHHHHHHHTSCTTCCTHHHHHHHH
T ss_pred -------h---hCcEEEEEECCccccCchhhcccCCchHHHHHHhhccccccCCHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 6 799999999999998764322111 00000000 01111 01258899999999
Q ss_pred Hhhccc
Q psy13409 308 YCALDK 313 (330)
Q Consensus 308 ~l~~~~ 313 (330)
+++..+
T Consensus 250 ~~~~~~ 255 (324)
T 3u9l_A 250 RVVGTA 255 (324)
T ss_dssp HHHTSC
T ss_pred HHhcCC
Confidence 998655
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=281.75 Aligned_cols=239 Identities=21% Similarity=0.179 Sum_probs=184.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
++|++|||||++|||++++++|+++|++|++++|+...+++..+.++........+.++.++.+|++++++++++++++.
T Consensus 1 ~~k~vlVTGas~GIG~ala~~L~~~G~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 80 (327)
T 1jtv_A 1 ARTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVT 80 (327)
T ss_dssp CCEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHHh
Confidence 47899999999999999999999999999888876554443333333211000124678999999999999999998873
Q ss_pred hcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccc
Q psy13409 95 DNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDIN 172 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~ 172 (330)
++++|+||||||+... ..+.+.++|++++++|+.+++++++.++|.|.+++.|+||++||..+..+.
T Consensus 81 --~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~~g~IV~isS~~~~~~~--------- 149 (327)
T 1jtv_A 81 --EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGL--------- 149 (327)
T ss_dssp --TSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTSCC---------
T ss_pred --cCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCcccccCC---------
Confidence 5899999999997643 357788999999999999999999999999988888999999999887764
Q ss_pred cccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCC
Q psy13409 173 LEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPP 252 (330)
Q Consensus 173 ~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (330)
+....|++||++++.|+++++.|++
T Consensus 150 -----~~~~~Y~aSK~a~~~~~~~la~el~-------------------------------------------------- 174 (327)
T 1jtv_A 150 -----PFNDVYCASKFALEGLCESLAVLLL-------------------------------------------------- 174 (327)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHHHG--------------------------------------------------
T ss_pred -----CCChHHHHHHHHHHHHHHHHHHHhh--------------------------------------------------
Confidence 6778999999999999999999998
Q ss_pred CCCCCceeEEEeeCcccccCcccccCCCch--------hhHH----H----HHHhhhhhccChHHHHHHHHHhhccc--c
Q psy13409 253 GANITNVNTYAVHPGVVDTELSRHFDSIIP--------GTAW----L----YQRVGGLFIKSPLQGAQTTLYCALDK--K 314 (330)
Q Consensus 253 ~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~--------~~~~----~----~~~~~~~~~~~~~e~a~~~~~l~~~~--~ 314 (330)
+ .||+||+|+||+|+|++......... .... . ..++++ ...+|+|+|+.++++++++ .
T Consensus 175 ~---~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~pedvA~~i~~l~~~~~~~ 250 (327)
T 1jtv_A 175 P---FGVHLSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTFHRFYQYLAHSKQVFRE-AAQNPEEVAEVFLTALRAPKPT 250 (327)
T ss_dssp G---GTEEEEEEEECCBCC-------CCHHHHHHTSCHHHHHHHHHHHHHHHHHHHH-HCBCHHHHHHHHHHHHHCSSCC
T ss_pred h---cCcEEEEEEeCcccChHHhhhhhcchhhhccCCHHHHHHHHHHHHHHHHhhhh-cCCCHHHHHHHHHHHHcCCCCC
Confidence 5 79999999999999999765432110 0000 0 012222 1359999999999999763 4
Q ss_pred ccccCceec
Q psy13409 315 CERETGLYY 323 (330)
Q Consensus 315 ~~~~~G~~~ 323 (330)
.++++|+.+
T Consensus 251 ~~~~tg~~~ 259 (327)
T 1jtv_A 251 LRYFTTERF 259 (327)
T ss_dssp SEEESCSTT
T ss_pred eEEEeCchH
Confidence 568888765
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-35 Score=269.15 Aligned_cols=222 Identities=24% Similarity=0.317 Sum_probs=191.2
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.+++++|++|||||++|||++++++|+++|++|++++|+.+.+++..++++.. +.++.++.+|+++++++++++
T Consensus 26 ~~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dl~~~~~v~~~~ 99 (272)
T 1yb1_A 26 RKSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL------GAKVHTFVVDCSNREDIYSSA 99 (272)
T ss_dssp CCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHH
T ss_pred ccccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhc------CCeEEEEEeeCCCHHHHHHHH
Confidence 45689999999999999999999999999999999999998888887777652 568999999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 91 QEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
+++.+.++++|++|||||..... .+.+.+++++.+++|+.+++++++.+++.|.+++.++||++||..+..+.
T Consensus 100 ~~~~~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~----- 174 (272)
T 1yb1_A 100 KKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSV----- 174 (272)
T ss_dssp HHHHHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CCCH-----
T ss_pred HHHHHHCCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEechhhcCCC-----
Confidence 99999999999999999986532 45677899999999999999999999999988878999999999876663
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
+....|++||++++.|+++++.|+..
T Consensus 175 ---------~~~~~Y~~sK~a~~~l~~~la~e~~~--------------------------------------------- 200 (272)
T 1yb1_A 175 ---------PFLLAYCSSKFAAVGFHKTLTDELAA--------------------------------------------- 200 (272)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------
T ss_pred ---------CCchhHHHHHHHHHHHHHHHHHHHHH---------------------------------------------
Confidence 56789999999999999999999851
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhcccc
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKK 314 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~ 314 (330)
....||+|++|+||+|+|++.+.. ..+.++ +.+|+|+|+.+++++.++.
T Consensus 201 -----~~~~gi~v~~v~Pg~v~t~~~~~~----------~~~~~~--~~~~~dva~~i~~~~~~~~ 249 (272)
T 1yb1_A 201 -----LQITGVKTTCLCPNFVNTGFIKNP----------STSLGP--TLEPEEVVNRLMHGILTEQ 249 (272)
T ss_dssp -----TTCTTEEEEEEEETHHHHCSTTCT----------HHHHCC--CCCHHHHHHHHHHHHHTTC
T ss_pred -----hCCCCeEEEEEeCCcccCCccccc----------cccccC--CCCHHHHHHHHHHHHHcCC
Confidence 111699999999999999985420 122333 7899999999999997654
|
| >2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-36 Score=282.82 Aligned_cols=244 Identities=18% Similarity=0.132 Sum_probs=159.2
Q ss_pred CCCCCCCCEEEEEcC--CCchHHHHHHHHHHCCCEEEEEecCh-----------hHHHH-----------HHHHHHHhhc
Q psy13409 10 ADTRLDGKTAIVTGS--NTGIGKCTANELAKRGARVIMACRSL-----------EKAET-----------AADDIRTSLK 65 (330)
Q Consensus 10 ~~~~~~gk~aLITGa--s~gIG~aia~~L~~~G~~Vil~~R~~-----------~~l~~-----------~~~~l~~~~~ 65 (330)
+.++|+||++||||| ++|||+++++.|+++|++|++++|+. +++++ +.+++.....
T Consensus 3 ~~~~l~~k~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (319)
T 2ptg_A 3 LPVDLRGKTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKPV 82 (319)
T ss_dssp CCCCCTTCEEEEECCCCTTSHHHHHHHHHHHTTCEEEEEECHHHHHHHHC------------------------------
T ss_pred cccccCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhccc
Confidence 345689999999999 89999999999999999999998753 11211 1122211100
Q ss_pred ccCCCCeEEEEEcc------------CCC--------HHHHHHHHHHHHhcCCCeeEEEEcCCCCC----CCCCCChhhH
Q psy13409 66 DVKDAGEVVIRQLD------------LSS--------LKSVRKCAQEILDNESAIHLLINNAGVMM----CPRQLTEDGY 121 (330)
Q Consensus 66 ~~~~~~~v~~i~~D------------ls~--------~~si~~l~~~i~~~~g~iDvlInnAG~~~----~~~~~~~~~~ 121 (330)
......++.+| +++ +++++++++++.+.++++|+||||||+.. +..+.+.++|
T Consensus 83 ---~~~~~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~ 159 (319)
T 2ptg_A 83 ---DLVFDKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGY 159 (319)
T ss_dssp -----CCSEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHH
T ss_pred ---cccccccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHH
Confidence 00002333333 333 45899999999999999999999999752 3367889999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccccCCCcc-hhhHHhHHHHHHHHHHHHHH
Q psy13409 122 ELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSAT-GAYGRSKLANILFTTELAKR 200 (330)
Q Consensus 122 ~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~asK~a~~~~~~~la~~ 200 (330)
++++++|+.+++++++.++|.|.+ +|+||++||..+..+. +.. ..|++||+|+++|+++||.|
T Consensus 160 ~~~~~vN~~g~~~l~~~~~~~m~~--~g~Iv~isS~~~~~~~--------------~~~~~~Y~asKaal~~l~~~la~e 223 (319)
T 2ptg_A 160 LAAVSSSSYSFVSLLQHFLPLMKE--GGSALALSYIASEKVI--------------PGYGGGMSSAKAALESDCRTLAFE 223 (319)
T ss_dssp HHHHHHHTHHHHHHHHHHGGGEEE--EEEEEEEEECC--------------------------------THHHHHHHHHH
T ss_pred HHHHhHhhHHHHHHHHHHHHHHhc--CceEEEEecccccccc--------------CccchhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999965 3899999999887664 455 58999999999999999999
Q ss_pred hcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCC
Q psy13409 201 LQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSI 280 (330)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~ 280 (330)
++. + .||+||+|+||+|+|++.+.....
T Consensus 224 l~~-------------------------------------------------~---~gIrvn~v~PG~v~T~~~~~~~~~ 251 (319)
T 2ptg_A 224 AGR-------------------------------------------------A---RAVRVNCISAGPLKSRAASAIGKA 251 (319)
T ss_dssp HHH-------------------------------------------------H---HCCEEEEEEECCCC----------
T ss_pred hcc-------------------------------------------------c---cCeeEEEEeeCCccChhhhhcccc
Confidence 961 1 489999999999999987654311
Q ss_pred --chhh----HHH--HHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 281 --IPGT----AWL--YQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 281 --~~~~----~~~--~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
.... +.. ..++++ +.+|+|+|++++||+++ .++++||++|...+
T Consensus 252 ~~~~~~~~~~~~~~~~~p~~r--~~~peevA~~v~~L~s~-~~~~itG~~i~vdG 303 (319)
T 2ptg_A 252 GDKTFIDLAIDYSEANAPLQK--ELESDDVGRAALFLLSP-LARAVTGATLYVDN 303 (319)
T ss_dssp -----------------------CCCHHHHHHHHHHHTSG-GGTTCCSCEEEEST
T ss_pred cchhhHHHHHHHHhccCCCCC--CCCHHHHHHHHHHHhCc-ccCCccCCEEEECC
Confidence 0000 111 134555 89999999999999965 67899999987543
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-36 Score=270.79 Aligned_cols=219 Identities=14% Similarity=0.047 Sum_probs=183.7
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
..++|++|||||++|||++++++|+++|++|++++|+.+.+ .....++.+|+++++++++++++
T Consensus 4 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~~~D~~~~~~v~~~~~~ 67 (241)
T 1dhr_A 4 SGEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEE----------------ASASVIVKMTDSFTEQADQVTAE 67 (241)
T ss_dssp --CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTT----------------SSEEEECCCCSCHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhc----------------cCCcEEEEcCCCCHHHHHHHHHH
Confidence 36799999999999999999999999999999999987542 12457789999999999999999
Q ss_pred HHhcC--CCeeEEEEcCCCCCC--C-CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCc
Q psy13409 93 ILDNE--SAIHLLINNAGVMMC--P-RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 93 i~~~~--g~iDvlInnAG~~~~--~-~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~ 167 (330)
+.+.+ +++|+||||||.... . .+.+.++|++.+++|+.+++.+++.++|.|.+ +|+||++||..+..+.
T Consensus 68 ~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~~~---- 141 (241)
T 1dhr_A 68 VGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKE--GGLLTLAGAKAALDGT---- 141 (241)
T ss_dssp HHHHHTTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEE--EEEEEEECCGGGGSCC----
T ss_pred HHHHhCCCCCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhcc--CCEEEEECCHHHccCC----
Confidence 99988 799999999997643 2 46678899999999999999999999999865 4899999999887764
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
++...|++||+|++.|+++++.|++..
T Consensus 142 ----------~~~~~Y~asK~a~~~~~~~la~e~~~~------------------------------------------- 168 (241)
T 1dhr_A 142 ----------PGMIGYGMAKGAVHQLCQSLAGKNSGM------------------------------------------- 168 (241)
T ss_dssp ----------TTBHHHHHHHHHHHHHHHHHTSTTSSC-------------------------------------------
T ss_pred ----------CCchHHHHHHHHHHHHHHHHHHHhccC-------------------------------------------
Confidence 678899999999999999999998510
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceeccc
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAK 325 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~ 325 (330)
+ .||+||+|+||+|+|++......... ..+ ..+|+|+|+.+++++++ ...++||+++..
T Consensus 169 -----~---~gi~v~~v~PG~v~T~~~~~~~~~~~--------~~~--~~~~~~vA~~v~~l~~~-~~~~~~G~~~~v 227 (241)
T 1dhr_A 169 -----P---SGAAAIAVLPVTLDTPMNRKSMPEAD--------FSS--WTPLEFLVETFHDWITG-NKRPNSGSLIQV 227 (241)
T ss_dssp -----C---TTCEEEEEEESCEECHHHHHHSTTSC--------GGG--SEEHHHHHHHHHHHHTT-TTCCCTTCEEEE
T ss_pred -----C---CCeEEEEEecCcccCccccccCcchh--------hcc--CCCHHHHHHHHHHHhcC-CCcCccceEEEE
Confidence 2 68999999999999998765322111 111 46799999999999965 567999999864
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=303.15 Aligned_cols=223 Identities=23% Similarity=0.325 Sum_probs=185.7
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
.+++||++|||||++|||+++|+.|+++|++|+++++.. ++++.+++.+ .+.++..+.+|++ ++.+++++
T Consensus 318 ~~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~--~~~~~~~i~~------~g~~~~~~~~Dv~--~~~~~~~~ 387 (604)
T 2et6_A 318 VSLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKD--ATKTVDEIKA------AGGEAWPDQHDVA--KDSEAIIK 387 (604)
T ss_dssp CCCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSC--CHHHHHHHHH------TTCEEEEECCCHH--HHHHHHHH
T ss_pred cccCCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCcc--HHHHHHHHHh------cCCeEEEEEcChH--HHHHHHHH
Confidence 468999999999999999999999999999999998642 3445555554 2567888888984 45678888
Q ss_pred HHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 92 EILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
++.+.+|++|+||||||+... ..+++.++|+.++++|+.|+++++++++|+|++++.|+||++||.++..+.
T Consensus 388 ~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~ag~~~~------ 461 (604)
T 2et6_A 388 NVIDKYGTIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSGIYGN------ 461 (604)
T ss_dssp HHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSCC------
T ss_pred HHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccCC------
Confidence 888999999999999998653 368899999999999999999999999999998878999999999988875
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
++...|++||+|+.+|+++||.|++
T Consensus 462 --------~~~~~Y~asKaal~~lt~~la~El~----------------------------------------------- 486 (604)
T 2et6_A 462 --------FGQANYSSSKAGILGLSKTMAIEGA----------------------------------------------- 486 (604)
T ss_dssp --------TTBHHHHHHHHHHHHHHHHHHHHHG-----------------------------------------------
T ss_pred --------CCChhHHHHHHHHHHHHHHHHHHhC-----------------------------------------------
Confidence 6788999999999999999999999
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceeccc
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAK 325 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~ 325 (330)
+ .|||||+|+||+ +|++........ .. ...+|+|+|+.++||+++ .++ +||++|..
T Consensus 487 ---~---~gIrVn~v~PG~-~T~m~~~~~~~~---------~~--~~~~pe~vA~~v~~L~s~-~~~-itG~~~~v 542 (604)
T 2et6_A 487 ---K---NNIKVNIVAPHA-ETAMTLSIMREQ---------DK--NLYHADQVAPLLVYLGTD-DVP-VTGETFEI 542 (604)
T ss_dssp ---G---GTEEEEEEEECC-CCCC------------------C--CSSCGGGTHHHHHHTTST-TCC-CCSCEEEE
T ss_pred ---c---cCeEEEEEcCCC-CCccccccCchh---------hc--cCCCHHHHHHHHHHHhCC-ccC-CCCcEEEE
Confidence 6 899999999995 999865432110 11 146899999999999966 566 99998864
|
| >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-36 Score=281.23 Aligned_cols=243 Identities=17% Similarity=0.135 Sum_probs=183.8
Q ss_pred CCCCCCCCEEEEEcC--CCchHHHHHHHHHHCCCEEEEEecChhH------HH-HHHHHHHHhhcccCCCC---eEEEEE
Q psy13409 10 ADTRLDGKTAIVTGS--NTGIGKCTANELAKRGARVIMACRSLEK------AE-TAADDIRTSLKDVKDAG---EVVIRQ 77 (330)
Q Consensus 10 ~~~~~~gk~aLITGa--s~gIG~aia~~L~~~G~~Vil~~R~~~~------l~-~~~~~l~~~~~~~~~~~---~v~~i~ 77 (330)
+.++|+||++||||| ++|||++++++|+++|++|++++|+... .. ...+.+.+. ..+. .+.++.
T Consensus 3 ~~~~l~gk~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 78 (315)
T 2o2s_A 3 FPIDLRGQTAFVAGVADSHGYGWAIAKHLASAGARVALGTWPPVLGLFQKSLQSGRLDEDRKL----PDGSLIEFAGVYP 78 (315)
T ss_dssp -CCCCTTCEEEEECCSSSSSHHHHHHHHHHTTTCEEEEEECHHHHHHHHHHHHHTTTHHHHBC----TTSCBCCCSCEEE
T ss_pred CcccCCCCEEEEeCCCCCCChHHHHHHHHHHCCCEEEEEecccccchhhhhhhhhhhhhhhhh----hcccccccccccc
Confidence 445689999999999 8999999999999999999999986421 00 001111111 0111 123333
Q ss_pred cc------------CC--------CHHHHHHHHHHHHhcCCCeeEEEEcCCCCC----CCCCCChhhHHHhHHHHHHHHH
Q psy13409 78 LD------------LS--------SLKSVRKCAQEILDNESAIHLLINNAGVMM----CPRQLTEDGYELQFATNHLGHY 133 (330)
Q Consensus 78 ~D------------ls--------~~~si~~l~~~i~~~~g~iDvlInnAG~~~----~~~~~~~~~~~~~l~vN~~g~~ 133 (330)
+| ++ |+++++++++++.+.++++|+||||||+.. +..+.+.++|++.+++|+.+++
T Consensus 79 ~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~ 158 (315)
T 2o2s_A 79 LDAAFDKPEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFV 158 (315)
T ss_dssp CCTTCSSTTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHH
T ss_pred ccccccccchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHH
Confidence 33 33 266899999999999999999999999752 3367889999999999999999
Q ss_pred HHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccccCCCcc-hhhHHhHHHHHHHHHHHHHHhccccccccccc
Q psy13409 134 LFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSAT-GAYGRSKLANILFTTELAKRLQVNFSRHYSCR 212 (330)
Q Consensus 134 ~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~ 212 (330)
++++.++|.|.+ +|+||++||.++..+. +.. ..|++||+|+++|+++||.|++.
T Consensus 159 ~l~~~~~~~m~~--~g~Iv~isS~~~~~~~--------------~~~~~~Y~asKaal~~l~~~la~el~~--------- 213 (315)
T 2o2s_A 159 SLLQHFGPIMNE--GGSAVTLSYLAAERVV--------------PGYGGGMSSAKAALESDTRTLAWEAGQ--------- 213 (315)
T ss_dssp HHHHHHSTTEEE--EEEEEEEEEGGGTSCC--------------TTCCTTHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHhc--CCEEEEEecccccccC--------------CCccHHHHHHHHHHHHHHHHHHHHhCc---------
Confidence 999999999865 3899999999887664 455 58999999999999999999861
Q ss_pred CchhhcccccccchhhhhhhcccCCCCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCC--chhhHH----
Q psy13409 213 LPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSI--IPGTAW---- 286 (330)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~--~~~~~~---- 286 (330)
+ .||+||+|+||+|+|++....... ....+.
T Consensus 214 ----------------------------------------~---~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~ 250 (315)
T 2o2s_A 214 ----------------------------------------K---YGVRVNAISAGPLKSRAASAIGKSGEKSFIDYAIDY 250 (315)
T ss_dssp ----------------------------------------H---TCCEEEEEEECCCCCHHHHHTTCSSSSCHHHHHHHH
T ss_pred ----------------------------------------c---cCeEEEEEecccccchhhhhccccccchhHHHHHHH
Confidence 1 589999999999999987654311 111111
Q ss_pred HH--HHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 287 LY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 287 ~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
.. .++++ +.+|+|+|++++||+++ .++++||++|...+
T Consensus 251 ~~~~~p~~r--~~~pedvA~~v~~L~s~-~~~~itG~~i~vdG 290 (315)
T 2o2s_A 251 SYNNAPLRR--DLHSDDVGGAALFLLSP-LARAVSGVTLYVDN 290 (315)
T ss_dssp HHHHSSSCC--CCCHHHHHHHHHHHTSG-GGTTCCSCEEEEST
T ss_pred HhccCCCCC--CCCHHHHHHHHHHHhCc-hhccCcCCEEEECC
Confidence 11 23444 88999999999999965 67899999987543
|
| >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-35 Score=273.20 Aligned_cols=244 Identities=16% Similarity=0.147 Sum_probs=183.0
Q ss_pred CCCCCCCEEEEEcCC--CchHHHHHHHHHHCCCEEEEEecChhHHH--HHH--HHHHHhhcccCCC---CeEEEEEcc--
Q psy13409 11 DTRLDGKTAIVTGSN--TGIGKCTANELAKRGARVIMACRSLEKAE--TAA--DDIRTSLKDVKDA---GEVVIRQLD-- 79 (330)
Q Consensus 11 ~~~~~gk~aLITGas--~gIG~aia~~L~~~G~~Vil~~R~~~~l~--~~~--~~l~~~~~~~~~~---~~v~~i~~D-- 79 (330)
.++|+||++|||||+ +|||++++++|+++|++|++++|+..... ... +.+++. ..+..+ .....+.+|
T Consensus 3 ~~~l~~k~~lVTGas~~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 81 (297)
T 1d7o_A 3 PIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQS-RVLPDGSLMEIKKVYPLDAV 81 (297)
T ss_dssp CCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGG-GBCTTSSBCCEEEEEEECTT
T ss_pred ccccCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEeeccccchhhhhhhhhhHhhhh-hhhcccccccccccccccee
Confidence 356899999999999 99999999999999999999998642110 000 001110 111011 112334443
Q ss_pred ------CC----C--------HHHHHHHHHHHHhcCCCeeEEEEcCCCCC----CCCCCChhhHHHhHHHHHHHHHHHHH
Q psy13409 80 ------LS----S--------LKSVRKCAQEILDNESAIHLLINNAGVMM----CPRQLTEDGYELQFATNHLGHYLFTL 137 (330)
Q Consensus 80 ------ls----~--------~~si~~l~~~i~~~~g~iDvlInnAG~~~----~~~~~~~~~~~~~l~vN~~g~~~l~~ 137 (330)
++ + +++++++++++.+.++++|+||||||+.. +..+.+.++|++.+++|+.+++++++
T Consensus 82 ~~~~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~ 161 (297)
T 1d7o_A 82 FDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLS 161 (297)
T ss_dssp CCSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHH
T ss_pred ccchhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHHHH
Confidence 32 2 66899999999999999999999999743 33678899999999999999999999
Q ss_pred HHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccccCCCcc-hhhHHhHHHHHHHHHHHHHHhcccccccccccCchh
Q psy13409 138 LLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSAT-GAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKE 216 (330)
Q Consensus 138 ~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~ 216 (330)
.++|.|.+ +|+||++||.++..+. +.. ..|++||+|+++|+++++.|++.
T Consensus 162 ~~~~~m~~--~g~iv~isS~~~~~~~--------------~~~~~~Y~asKaa~~~~~~~la~e~~~------------- 212 (297)
T 1d7o_A 162 HFLPIMNP--GGASISLTYIASERII--------------PGYGGGMSSAKAALESDTRVLAFEAGR------------- 212 (297)
T ss_dssp HHGGGEEE--EEEEEEEECGGGTSCC--------------TTCTTTHHHHHHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHhcc--CceEEEEeccccccCC--------------CCcchHHHHHHHHHHHHHHHHHHHhCc-------------
Confidence 99999865 4899999999887664 455 58999999999999999999961
Q ss_pred hcccccccchhhhhhhcccCCCCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhh
Q psy13409 217 ILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGL 294 (330)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~ 294 (330)
. .||+||+|+||+|+|++...........+... .++++
T Consensus 213 ------------------------------------~---~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r- 252 (297)
T 1d7o_A 213 ------------------------------------K---QNIRVNTISAGPLGSRAAKAIGFIDTMIEYSYNNAPIQK- 252 (297)
T ss_dssp ------------------------------------H---HCCEEEEEEECCCBCCCSSCCSHHHHHHHHHHHHSSSCC-
T ss_pred ------------------------------------c---cCcEEEEEeccccccchhhhccccHHHHHHhhccCCCCC-
Confidence 1 48999999999999998765321111111121 23333
Q ss_pred hccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 295 FIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 295 ~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+.+|+|+|++++||+++ .++++||++|...
T Consensus 253 -~~~pedvA~~v~~l~s~-~~~~itG~~i~vd 282 (297)
T 1d7o_A 253 -TLTADEVGNAAAFLVSP-LASAITGATIYVD 282 (297)
T ss_dssp -CBCHHHHHHHHHHHTSG-GGTTCCSCEEEES
T ss_pred -CCCHHHHHHHHHHHhCc-cccCCCCCEEEEC
Confidence 78999999999999965 5679999988654
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=267.25 Aligned_cols=219 Identities=13% Similarity=0.068 Sum_probs=182.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
|++|++|||||++|||++++++|+++|++|++++|+.+.+ .....++.+|++++++++++++++
T Consensus 1 m~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~~~D~~~~~~~~~~~~~~ 64 (236)
T 1ooe_A 1 MSSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQ----------------ADSNILVDGNKNWTEQEQSILEQT 64 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTT----------------SSEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCcccc----------------ccccEEEeCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999999999999999987542 124577899999999999999999
Q ss_pred HhcC--CCeeEEEEcCCCCCC--C-CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 94 LDNE--SAIHLLINNAGVMMC--P-RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 94 ~~~~--g~iDvlInnAG~~~~--~-~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
.+.+ +++|+||||||.... . .+.+.++|++.+++|+.+++.+++.++|.|.+ .|+||++||..+..+.
T Consensus 65 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~g~iv~isS~~~~~~~----- 137 (236)
T 1ooe_A 65 ASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKP--GGLLQLTGAAAAMGPT----- 137 (236)
T ss_dssp HHHHTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEE--EEEEEEECCGGGGSCC-----
T ss_pred HHHhCCCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhcc--CCEEEEECchhhccCC-----
Confidence 9888 799999999997643 2 45678899999999999999999999999865 4899999999887764
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
+....|++||+++++|+++++.|++..
T Consensus 138 ---------~~~~~Y~~sK~a~~~~~~~la~e~~~~-------------------------------------------- 164 (236)
T 1ooe_A 138 ---------PSMIGYGMAKAAVHHLTSSLAAKDSGL-------------------------------------------- 164 (236)
T ss_dssp ---------TTBHHHHHHHHHHHHHHHHHHSTTSSC--------------------------------------------
T ss_pred ---------CCcHHHHHHHHHHHHHHHHHHHHhccc--------------------------------------------
Confidence 678899999999999999999997510
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceeccc
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAK 325 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~ 325 (330)
+ .||+||+|+||+|+|++......... ..+ ..+|+|+|+.+++++.++...++||++|..
T Consensus 165 ----~---~gi~v~~v~Pg~v~t~~~~~~~~~~~--------~~~--~~~~~dvA~~i~~~l~s~~~~~~~G~~~~v 224 (236)
T 1ooe_A 165 ----P---DNSAVLTIMPVTLDTPMNRKWMPNAD--------HSS--WTPLSFISEHLLKWTTETSSRPSSGALLKI 224 (236)
T ss_dssp ----C---TTCEEEEEEESCBCCHHHHHHSTTCC--------GGG--CBCHHHHHHHHHHHHHCGGGCCCTTCEEEE
T ss_pred ----C---CCeEEEEEecCcccCcchhhcCCCcc--------ccc--cCCHHHHHHHHHHHHcCCCcccccccEEEE
Confidence 2 68999999999999998764322111 112 578999999999555455678999999864
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=268.96 Aligned_cols=224 Identities=17% Similarity=0.146 Sum_probs=159.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
+++||++|||||++|||++++++|++ |+.|++++|+.+.+++..+ ..++.++.+|+++.++ ...+.+
T Consensus 2 ~l~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~~~~~~~~-----------~~~~~~~~~D~~~~~~-~~~~~~ 68 (245)
T 3e9n_A 2 SLKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEHLAALAE-----------IEGVEPIESDIVKEVL-EEGGVD 68 (245)
T ss_dssp ----CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHHT-----------STTEEEEECCHHHHHH-TSSSCG
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHh-----------hcCCcceecccchHHH-HHHHHH
Confidence 57899999999999999999999987 9999999999887665432 2357889999998876 444455
Q ss_pred HHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 93 ILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
..+.++++|++|||||..... .+.+.++|++.+++|+.+++.+++.++|.|.+++ |+||++||..+..+.
T Consensus 69 ~~~~~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-g~iv~isS~~~~~~~------- 140 (245)
T 3e9n_A 69 KLKNLDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS-GCVIYINSGAGNGPH------- 140 (245)
T ss_dssp GGTTCSCCSEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEC---------------
T ss_pred HHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEEcCcccccCC-------
Confidence 566788999999999987543 5678899999999999999999999999998765 999999999887774
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
+....|++||+|++.|+++++.|++
T Consensus 141 -------~~~~~Y~asK~a~~~~~~~la~e~~------------------------------------------------ 165 (245)
T 3e9n_A 141 -------PGNTIYAASKHALRGLADAFRKEEA------------------------------------------------ 165 (245)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHG------------------------------------------------
T ss_pred -------CCchHHHHHHHHHHHHHHHHHHHhh------------------------------------------------
Confidence 6788999999999999999999998
Q ss_pred CCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceec
Q psy13409 251 PPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYY 323 (330)
Q Consensus 251 ~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~ 323 (330)
+ .||+||+|+||+|+|++.+....... ......++.+|+|+|++++||++.+....+.+-.+
T Consensus 166 --~---~gi~v~~v~PG~v~t~~~~~~~~~~~------~~~~~~~~~~p~dvA~~i~~l~~~~~~~~~~~i~~ 227 (245)
T 3e9n_A 166 --N---NGIRVSTVSPGPTNTPMLQGLMDSQG------TNFRPEIYIEPKEIANAIRFVIDAGETTQITNVDV 227 (245)
T ss_dssp --G---GTCEEEEEEECCC----------------------CCGGGSCHHHHHHHHHHHHTSCTTEEEEEEEE
T ss_pred --h---cCeEEEEEecCCccCchhhhhhhhhh------cccccccCCCHHHHHHHHHHHHcCCCccceeeeEE
Confidence 5 79999999999999998876543211 11112237899999999999998765444444333
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=260.62 Aligned_cols=227 Identities=25% Similarity=0.270 Sum_probs=182.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCC--CEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRG--ARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G--~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
|++|++|||||++|||++++++|+++| ++|++++|+.++++++. +. .+.++.++.+|++++++++++++
T Consensus 1 m~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~l~----~~-----~~~~~~~~~~D~~~~~~~~~~~~ 71 (250)
T 1yo6_A 1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELK----SI-----KDSRVHVLPLTVTCDKSLDTFVS 71 (250)
T ss_dssp CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHH----TC-----CCTTEEEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHHHHH----hc-----cCCceEEEEeecCCHHHHHHHHH
Confidence 468999999999999999999999999 99999999987765432 11 25678999999999999999999
Q ss_pred HHHhcCC--CeeEEEEcCCCCC-C--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhh------C-----CCeEEEEc
Q psy13409 92 EILDNES--AIHLLINNAGVMM-C--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKS------A-----PARIINLS 155 (330)
Q Consensus 92 ~i~~~~g--~iDvlInnAG~~~-~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~------~-----~g~IV~iS 155 (330)
++.+.++ ++|++|||||... . ..+.+.++++..+++|+.+++.+++.+++.|.++ + .++||++|
T Consensus 72 ~~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~is 151 (250)
T 1yo6_A 72 KVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITIS 151 (250)
T ss_dssp HHHHHHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEEC
T ss_pred HHHHhcCCCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEec
Confidence 9998888 8999999999875 2 2567889999999999999999999999999876 5 79999999
Q ss_pred CCCcccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhccc
Q psy13409 156 SLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDAN 235 (330)
Q Consensus 156 S~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (330)
|..+..+... .....++...|++||++++.|+++++.++.
T Consensus 152 S~~~~~~~~~-------~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~--------------------------------- 191 (250)
T 1yo6_A 152 SGLGSITDNT-------SGSAQFPVLAYRMSKAAINMFGRTLAVDLK--------------------------------- 191 (250)
T ss_dssp CGGGCSTTCC-------STTSSSCBHHHHHHHHHHHHHHHHHHHHTG---------------------------------
T ss_pred cCccccCCcc-------cccccCCccHHHHHHHHHHHHHHHHHHHhc---------------------------------
Confidence 9887665310 001114677899999999999999999998
Q ss_pred CCCCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccc
Q psy13409 236 LQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKC 315 (330)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~ 315 (330)
+ .||+|++|+||+|+|++.+.. ...+|+|+|+.++++++++ .
T Consensus 192 -----------------~---~gi~v~~v~Pg~v~t~~~~~~-----------------~~~~~~~~a~~~~~~~~~~-~ 233 (250)
T 1yo6_A 192 -----------------D---DNVLVVNFCPGWVQTNLGGKN-----------------AALTVEQSTAELISSFNKL-D 233 (250)
T ss_dssp -----------------G---GTCEEEEEECCCC------------------------------HHHHHHHHHHHTTC-C
T ss_pred -----------------c---CCeEEEEEcCCceecCCCCCC-----------------CCCCHHHHHHHHHHHHhcc-c
Confidence 5 799999999999999986531 1578999999999999765 4
Q ss_pred cccCceecccCC
Q psy13409 316 ERETGLYYAKAD 327 (330)
Q Consensus 316 ~~~~G~~~~~~~ 327 (330)
.+++|+++...+
T Consensus 234 ~~~~G~~~~~~g 245 (250)
T 1yo6_A 234 NSHNGRFFMRNL 245 (250)
T ss_dssp GGGTTCEEETTE
T ss_pred ccCCCeEEEECC
Confidence 588999987543
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-34 Score=261.65 Aligned_cols=228 Identities=21% Similarity=0.245 Sum_probs=191.7
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCC---CEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRG---ARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVR 87 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G---~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~ 87 (330)
..++++|++|||||++|||++++++|+++| ++|++++|+.+.++.+ +++... +.++.++.+|++++++++
T Consensus 16 ~~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~-~~l~~~------~~~~~~~~~Dl~~~~~v~ 88 (267)
T 1sny_A 16 PRGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKEL-EDLAKN------HSNIHILEIDLRNFDAYD 88 (267)
T ss_dssp ----CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHH-HHHHHH------CTTEEEEECCTTCGGGHH
T ss_pred ccCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHH-HHhhcc------CCceEEEEecCCChHHHH
Confidence 346899999999999999999999999999 9999999998765543 333332 457899999999999999
Q ss_pred HHHHHHHhcCC--CeeEEEEcCCCCC---CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhh------C-----CCeE
Q psy13409 88 KCAQEILDNES--AIHLLINNAGVMM---CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKS------A-----PARI 151 (330)
Q Consensus 88 ~l~~~i~~~~g--~iDvlInnAG~~~---~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~------~-----~g~I 151 (330)
++++++.+.++ ++|+||||||... +..+.+.++++..+++|+.+++.+++.+++.|.++ + .++|
T Consensus 89 ~~~~~~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i 168 (267)
T 1sny_A 89 KLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAI 168 (267)
T ss_dssp HHHHHHHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEE
T ss_pred HHHHHHHHhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceE
Confidence 99999998888 8999999999865 22567889999999999999999999999999876 3 5899
Q ss_pred EEEcCCCcccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhh
Q psy13409 152 INLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILL 231 (330)
Q Consensus 152 V~iSS~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (330)
|++||..+..+.. +.++...|++||++++.|+++++.|++
T Consensus 169 v~isS~~~~~~~~-----------~~~~~~~Y~~sK~a~~~~~~~la~e~~----------------------------- 208 (267)
T 1sny_A 169 INMSSILGSIQGN-----------TDGGMYAYRTSKSALNAATKSLSVDLY----------------------------- 208 (267)
T ss_dssp EEECCGGGCSTTC-----------CSCCCHHHHHHHHHHHHHHHHHHHHHG-----------------------------
T ss_pred EEEecccccccCC-----------CCCCchHHHHHHHHHHHHHHHHHHHhh-----------------------------
Confidence 9999988766531 123667899999999999999999998
Q ss_pred hcccCCCCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhc
Q psy13409 232 CDANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCAL 311 (330)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~ 311 (330)
. .||+|++|+||+|+|++.... ...+|+|+|+.+++++.
T Consensus 209 ---------------------~---~gi~v~~v~Pg~v~t~~~~~~-----------------~~~~~~~~a~~~~~~~~ 247 (267)
T 1sny_A 209 ---------------------P---QRIMCVSLHPGWVKTDMGGSS-----------------APLDVPTSTGQIVQTIS 247 (267)
T ss_dssp ---------------------G---GTCEEEEECCCSBCSTTTCTT-----------------CSBCHHHHHHHHHHHHH
T ss_pred ---------------------c---CCcEEEEeCCcceecCCCCCC-----------------CCCCHHHHHHHHHHHHH
Confidence 5 799999999999999987531 15799999999999996
Q ss_pred cccccccCceecccCC
Q psy13409 312 DKKCERETGLYYAKAD 327 (330)
Q Consensus 312 ~~~~~~~~G~~~~~~~ 327 (330)
.. ...++|++|.+.+
T Consensus 248 ~~-~~~~~G~~~~~~g 262 (267)
T 1sny_A 248 KL-GEKQNGGFVNYDG 262 (267)
T ss_dssp HC-CGGGTTCEECTTS
T ss_pred hc-CcCCCCcEEccCC
Confidence 64 4688999998755
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-34 Score=263.55 Aligned_cols=238 Identities=26% Similarity=0.366 Sum_probs=190.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHH-CCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAK-RGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~-~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
.++|++|||||+||||++++++|++ +|++|++++|+.+++++..+++... +.++.++.+|+++.+++++++++
T Consensus 2 ~~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dl~~~~~~~~~~~~ 75 (276)
T 1wma_A 2 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAE------GLSPRFHQLDIDDLQSIRALRDF 75 (276)
T ss_dssp CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHT------TCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhc------CCeeEEEECCCCCHHHHHHHHHH
Confidence 4689999999999999999999999 9999999999998888887777653 46788999999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCCC-CCCC-hhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc--
Q psy13409 93 ILDNESAIHLLINNAGVMMCP-RQLT-EDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF-- 168 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~-~~~~-~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~-- 168 (330)
+.+.++++|+||||||..... ...+ .++++..+++|+.+++++++.+++.|.+ .|+||++||..+..+.+....
T Consensus 76 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~g~iv~~sS~~~~~~~~~~~~~~ 153 (276)
T 1wma_A 76 LRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKP--QGRVVNVSSIMSVRALKSCSPEL 153 (276)
T ss_dssp HHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEE--EEEEEEECCHHHHHHHHTSCHHH
T ss_pred HHHhcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCC--CCEEEEECChhhhcccccCChhH
Confidence 999999999999999987543 2333 4889999999999999999999998865 489999999877643100000
Q ss_pred ------ccccc--------------------ccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhccccc
Q psy13409 169 ------EDINL--------------------EKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTK 222 (330)
Q Consensus 169 ------~~~~~--------------------~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~ 222 (330)
.+++. ...++ ...|++||++++.|+++++.+++..
T Consensus 154 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~~sK~a~~~~~~~la~~~~~~------------------ 214 (276)
T 1wma_A 154 QQKFRSETITEEELVGLMNKFVEDTKKGVHQKEGWP-SSAYGVTKIGVTVLSRIHARKLSEQ------------------ 214 (276)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHHHTTCTTTTTCC-SCHHHHHHHHHHHHHHHHHHHHHHH------------------
T ss_pred HhhccccccchhhhhhhhhhhhhhhcccccccCCCc-cchhHHHHHHHHHHHHHHHHHhhcc------------------
Confidence 00000 00112 3789999999999999999998720
Q ss_pred ccchhhhhhhcccCCCCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHH
Q psy13409 223 RFSNLTILLCDANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQG 302 (330)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 302 (330)
....||+|++|+||+|+|++.+.. .+.+|+|+
T Consensus 215 -------------------------------~~~~~i~v~~v~PG~v~t~~~~~~-----------------~~~~~~~~ 246 (276)
T 1wma_A 215 -------------------------------RKGDKILLNACCPGWVRTDMAGPK-----------------ATKSPEEG 246 (276)
T ss_dssp -------------------------------CTTSCCEEEEEECCSBCSTTTCTT-----------------CSBCHHHH
T ss_pred -------------------------------cCCCceEEEEecCCccccCcCCcc-----------------ccCChhHh
Confidence 001389999999999999987541 26799999
Q ss_pred HHHHHHhhcccc-ccccCceecccC
Q psy13409 303 AQTTLYCALDKK-CERETGLYYAKA 326 (330)
Q Consensus 303 a~~~~~l~~~~~-~~~~~G~~~~~~ 326 (330)
|+.++||++.+. +++++|++|...
T Consensus 247 a~~~~~l~~~~~~~~~~~G~~~~~~ 271 (276)
T 1wma_A 247 AETPVYLALLPPDAEGPHGQFVSEK 271 (276)
T ss_dssp THHHHHHHSCCTTCCCCCSCEEETT
T ss_pred hhhHhhhhcCcccccccCceEeccC
Confidence 999999997653 469999999854
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=296.06 Aligned_cols=228 Identities=24% Similarity=0.310 Sum_probs=176.9
Q ss_pred cCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEec---------ChhHHHHHHHHHHHhhcccCCCCeEEEEEcc
Q psy13409 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACR---------SLEKAETAADDIRTSLKDVKDAGEVVIRQLD 79 (330)
Q Consensus 9 ~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R---------~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~D 79 (330)
...++++||++|||||++|||+++|++|+++|++|++++| +.+.+++..+++... +..+ .+|
T Consensus 12 ~~~~~l~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~------~~~~---~~D 82 (613)
T 3oml_A 12 DGKLRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKA------GGEA---VAD 82 (613)
T ss_dssp ---CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHT------TCCE---EEC
T ss_pred ccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHh------CCeE---EEE
Confidence 3446799999999999999999999999999999999988 666777777777653 2333 479
Q ss_pred CCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCC
Q psy13409 80 LSSLKSVRKCAQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSL 157 (330)
Q Consensus 80 ls~~~si~~l~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~ 157 (330)
+++.++++++++++.+.++++|+||||||+.... .+.+.++|+.++++|+.|++++++.++|.|++++.|+||++||.
T Consensus 83 ~~d~~~~~~~~~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~g~IV~isS~ 162 (613)
T 3oml_A 83 YNSVIDGAKVIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSSN 162 (613)
T ss_dssp CCCGGGHHHHHC----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCH
T ss_pred eCCHHHHHHHHHHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCH
Confidence 9999999999999999999999999999987543 57899999999999999999999999999999888999999999
Q ss_pred CcccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCC
Q psy13409 158 AHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQ 237 (330)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (330)
++..+. ++...|++||+|+++|+++||.|++
T Consensus 163 a~~~~~--------------~~~~~Y~asKaal~~lt~~la~e~~----------------------------------- 193 (613)
T 3oml_A 163 SGIYGN--------------FGQVNYTAAKMGLIGLANTVAIEGA----------------------------------- 193 (613)
T ss_dssp HHHHCC--------------TTCHHHHHHHHHHHHHHHHHHHHHG-----------------------------------
T ss_pred HHcCCC--------------CCChHHHHHHHHHHHHHHHHHHHhC-----------------------------------
Confidence 988885 6788999999999999999999998
Q ss_pred CCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccc
Q psy13409 238 TPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCER 317 (330)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~ 317 (330)
+ .||+||+|+||++ |++....... .... ..+|+|+|++++||+++. ++
T Consensus 194 ---------------~---~gI~vn~v~Pg~~-t~~~~~~~~~---------~~~~--~~~pedvA~~v~~L~s~~--~~ 241 (613)
T 3oml_A 194 ---------------R---NNVLCNVIVPTAA-SRMTEGILPD---------ILFN--ELKPKLIAPVVAYLCHES--CE 241 (613)
T ss_dssp ---------------G---GTEEEEEEEEC-------CCCCCH---------HHHT--TCCGGGTHHHHHHTTSTT--CC
T ss_pred ---------------c---cCeEEEEEECCCC-Chhhhhccch---------hhhh--cCCHHHHHHHHHHhcCCC--cC
Confidence 5 7999999999975 6655443221 1112 469999999999999775 69
Q ss_pred cCceecccC
Q psy13409 318 ETGLYYAKA 326 (330)
Q Consensus 318 ~~G~~~~~~ 326 (330)
+||++|...
T Consensus 242 ~tG~~i~vd 250 (613)
T 3oml_A 242 DNGSYIESA 250 (613)
T ss_dssp CCSCEEEEE
T ss_pred CCceEEEEC
Confidence 999998643
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=261.59 Aligned_cols=220 Identities=24% Similarity=0.204 Sum_probs=186.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
+++||+++||||+||||++++++|+++|++|++++|+.+++++..+++.+. ...++.++.+|++|.+++++++++
T Consensus 25 ~~~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~d~~~v~~~~~~ 99 (286)
T 1xu9_A 25 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLEL-----GAASAHYIAGTMEDMTFAEQFVAQ 99 (286)
T ss_dssp GGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH-----TCSEEEEEECCTTCHHHHHHHHHH
T ss_pred hcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHh-----CCCceEEEeCCCCCHHHHHHHHHH
Confidence 478999999999999999999999999999999999999888887777654 234789999999999999999999
Q ss_pred HHhcCCCeeEEEEc-CCCCCCC-CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 93 ILDNESAIHLLINN-AGVMMCP-RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 93 i~~~~g~iDvlInn-AG~~~~~-~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
+.+.++++|++||| +|..... .+.+.++++..+++|+.+++.+++.++|.|.+. .|+||++||.++..+.
T Consensus 100 ~~~~~g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~g~iv~isS~~~~~~~------- 171 (286)
T 1xu9_A 100 AGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS-NGSIVVVSSLAGKVAY------- 171 (286)
T ss_dssp HHHHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEEGGGTSCC-------
T ss_pred HHHHcCCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHC-CCEEEEECCcccccCC-------
Confidence 99989999999999 5665332 456889999999999999999999999998765 5899999999887664
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
++...|++||++++.++++++.|+...
T Consensus 172 -------~~~~~Y~asK~a~~~~~~~l~~e~~~~---------------------------------------------- 198 (286)
T 1xu9_A 172 -------PMVAAYSASKFALDGFFSSIRKEYSVS---------------------------------------------- 198 (286)
T ss_dssp -------TTCHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------------------
T ss_pred -------CCccHHHHHHHHHHHHHHHHHHHHhhc----------------------------------------------
Confidence 678899999999999999999998310
Q ss_pred CCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccc
Q psy13409 251 PPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDK 313 (330)
Q Consensus 251 ~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~ 313 (330)
. .+|+|++|+||+|+|++........ ......+|+|+|+.++..+..+
T Consensus 199 --~---~~i~v~~v~Pg~v~t~~~~~~~~~~----------~~~~~~~~~~vA~~i~~~~~~~ 246 (286)
T 1xu9_A 199 --R---VNVSITLCVLGLIDTETAMKAVSGI----------VHMQAAPKEECALEIIKGGALR 246 (286)
T ss_dssp --T---CCCEEEEEEECCBCCHHHHHHSCGG----------GGGGCBCHHHHHHHHHHHHHTT
T ss_pred --C---CCeEEEEeecCccCChhHHHhcccc----------ccCCCCCHHHHHHHHHHHHhcC
Confidence 4 7999999999999999865322110 1122679999999999988654
|
| >4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=276.40 Aligned_cols=233 Identities=12% Similarity=-0.027 Sum_probs=190.7
Q ss_pred CCCCEEEEEcCCCchHHH--HHHHHHHCCCEEEEEecChhH------------HHHHHHHHHHhhcccCCCCeEEEEEcc
Q psy13409 14 LDGKTAIVTGSNTGIGKC--TANELAKRGARVIMACRSLEK------------AETAADDIRTSLKDVKDAGEVVIRQLD 79 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~a--ia~~L~~~G~~Vil~~R~~~~------------l~~~~~~l~~~~~~~~~~~~v~~i~~D 79 (330)
..||++|||||++|||++ +++.|++.|++|++++|+... .+.+.+.+.+ .+.++.++.||
T Consensus 58 ~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~D 131 (418)
T 4eue_A 58 RGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKK------KGLVAKNFIED 131 (418)
T ss_dssp CCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHH------TTCCEEEEESC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHHHHHH------cCCcEEEEEee
Confidence 689999999999999999 999999999999999997543 2333333333 36778999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCeeEEEEcCCCC---------------CCC---------------------CCCChhhHHH
Q psy13409 80 LSSLKSVRKCAQEILDNESAIHLLINNAGVM---------------MCP---------------------RQLTEDGYEL 123 (330)
Q Consensus 80 ls~~~si~~l~~~i~~~~g~iDvlInnAG~~---------------~~~---------------------~~~~~~~~~~ 123 (330)
++++++++++++.+.+.+|++|+||||||.. .+. .+.+.++|+.
T Consensus 132 vtd~~~v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~ 211 (418)
T 4eue_A 132 AFSNETKDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEE 211 (418)
T ss_dssp TTCHHHHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHH
Confidence 9999999999999999999999999999974 111 2458899999
Q ss_pred hHHHHHHHHH-HHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccccCCCcc--hhhHHhHHHHHHHHHHHHHH
Q psy13409 124 QFATNHLGHY-LFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSAT--GAYGRSKLANILFTTELAKR 200 (330)
Q Consensus 124 ~l~vN~~g~~-~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~~~~~--~~Y~asK~a~~~~~~~la~~ 200 (330)
++++|..+.+ .+++.+++.+....+|+||++||.++..+. +.+ ++|++||+|+++|+++||.|
T Consensus 212 ~~~vn~~~~~~~~~~~l~~~~~~~~gg~IV~iSSi~~~~~~--------------p~~~~~aY~ASKaAL~~ltrsLA~E 277 (418)
T 4eue_A 212 TRKVMGGEDWQEWCEELLYEDCFSDKATTIAYSYIGSPRTY--------------KIYREGTIGIAKKDLEDKAKLINEK 277 (418)
T ss_dssp HHHHHSSHHHHHHHHHHHHTTCEEEEEEEEEEECCCCGGGT--------------TTTTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHhhhcCCcEEEEEeCchhcCCC--------------CccccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888 677777765444446999999999887764 555 89999999999999999999
Q ss_pred hcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCC
Q psy13409 201 LQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSI 280 (330)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~ 280 (330)
++. . .|||||+|+||+|+|+++...+..
T Consensus 278 La~-------------------------------------------------~---~GIrVN~V~PG~v~T~~s~~ip~~ 305 (418)
T 4eue_A 278 LNR-------------------------------------------------V---IGGRAFVSVNKALVTKASAYIPTF 305 (418)
T ss_dssp HHH-------------------------------------------------H---HSCEEEEEECCCCCCHHHHTSTTH
T ss_pred hCC-------------------------------------------------c---cCeEEEEEECCcCcChhhhcCCCC
Confidence 981 0 289999999999999999887654
Q ss_pred chhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceec
Q psy13409 281 IPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYY 323 (330)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~ 323 (330)
+.........+++ .++||++++.+.||+++ ...+|+.+
T Consensus 306 p~y~~~~~~~mk~--~G~~E~v~e~~~~L~sd---~~~~g~~~ 343 (418)
T 4eue_A 306 PLYAAILYKVMKE--KNIHENCIMQIERMFSE---KIYSNEKI 343 (418)
T ss_dssp HHHHHHHHHHHHH--TTCCCCHHHHHHHHHHH---TTSSSSCC
T ss_pred cHHHHHHHHHHhh--cCChHHHHHHHHHHhhc---cccCCCcc
Confidence 4444455567777 79999999999999966 35678773
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=254.68 Aligned_cols=222 Identities=23% Similarity=0.263 Sum_probs=181.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
++|++|||||++|||++++++|+++|++|++++|+.+ . .++.++.+|++++++++++++++
T Consensus 1 ~~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~-~-----------------~~~~~~~~D~~~~~~~~~~~~~~- 61 (242)
T 1uay_A 1 MERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE-G-----------------EDLIYVEGDVTREEDVRRAVARA- 61 (242)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC-S-----------------SSSEEEECCTTCHHHHHHHHHHH-
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc-c-----------------cceEEEeCCCCCHHHHHHHHHHH-
Confidence 3789999999999999999999999999999999864 1 13478999999999999999999
Q ss_pred hcCCCeeEEEEcCCCCCCC--CCC----ChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC---C---CeEEEEcCCCcccC
Q psy13409 95 DNESAIHLLINNAGVMMCP--RQL----TEDGYELQFATNHLGHYLFTLLLLPRIIKSA---P---ARIINLSSLAHTWG 162 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~--~~~----~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~---~---g~IV~iSS~~~~~~ 162 (330)
+.++++|++|||||..... .+. +.+++++.+++|+.+++.+++.+++.|.+++ . ++||++||..+..+
T Consensus 62 ~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~ 141 (242)
T 1uay_A 62 QEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEG 141 (242)
T ss_dssp HHHSCEEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHC
T ss_pred HhhCCceEEEEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccC
Confidence 7788999999999986532 222 3449999999999999999999999998754 3 39999999987766
Q ss_pred CCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcc
Q psy13409 163 DGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNH 242 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (330)
. ++...|++||++++.++++++.|++
T Consensus 142 ~--------------~~~~~Y~~sK~a~~~~~~~l~~e~~---------------------------------------- 167 (242)
T 1uay_A 142 Q--------------IGQAAYAASKGGVVALTLPAARELA---------------------------------------- 167 (242)
T ss_dssp C--------------TTCHHHHHHHHHHHHHHHHHHHHHG----------------------------------------
T ss_pred C--------------CCCchhhHHHHHHHHHHHHHHHHHh----------------------------------------
Confidence 4 6778999999999999999999998
Q ss_pred cccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhh-hhccChHHHHHHHHHhhccccccccCce
Q psy13409 243 YCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGG-LFIKSPLQGAQTTLYCALDKKCERETGL 321 (330)
Q Consensus 243 ~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~a~~~~~l~~~~~~~~~~G~ 321 (330)
+ .||++++|+||+|+|++...... ...+........ .++.+|+|+|+++++++++ ++++|+
T Consensus 168 ----------~---~gi~v~~v~Pg~v~t~~~~~~~~--~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~---~~~~G~ 229 (242)
T 1uay_A 168 ----------G---WGIRVVTVAPGLFDTPLLQGLPE--KAKASLAAQVPFPPRLGRPEEYAALVLHILEN---PMLNGE 229 (242)
T ss_dssp ----------G---GTEEEEEEEECSCSSHHHHTSCH--HHHHHHHTTCCSSCSCCCHHHHHHHHHHHHHC---TTCCSC
T ss_pred ----------h---cCcEEEEEEeccCcchhhhccch--hHHHHHHhhCCCcccCCCHHHHHHHHHHHhcC---CCCCCc
Confidence 5 79999999999999998765421 111111111111 2378999999999999966 588999
Q ss_pred ecccCC
Q psy13409 322 YYAKAD 327 (330)
Q Consensus 322 ~~~~~~ 327 (330)
.|...+
T Consensus 230 ~~~v~g 235 (242)
T 1uay_A 230 VVRLDG 235 (242)
T ss_dssp EEEEST
T ss_pred EEEEcC
Confidence 886543
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-34 Score=258.24 Aligned_cols=227 Identities=15% Similarity=0.075 Sum_probs=165.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
|++|||||++|||++++++|+++|++|++++|+.++++ . .+.+|+++.++++++++++
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~---------------~----~~~~Dl~~~~~v~~~~~~~--- 59 (257)
T 1fjh_A 2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVI---------------A----DLSTAEGRKQAIADVLAKC--- 59 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEE---------------C----CTTSHHHHHHHHHHHHTTC---
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhc---------------c----ccccCCCCHHHHHHHHHHh---
Confidence 68999999999999999999999999999999875321 0 1678999999888887632
Q ss_pred CCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc-c------
Q psy13409 97 ESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF-E------ 169 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~-~------ 169 (330)
.+++|+||||||...+ .+.++..+++|+.+++.+++.++|.|.+++.|+||++||..+..+...... +
T Consensus 60 ~~~id~lv~~Ag~~~~-----~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~ 134 (257)
T 1fjh_A 60 SKGMDGLVLCAGLGPQ-----TKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAG 134 (257)
T ss_dssp TTCCSEEEECCCCCTT-----CSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHT
T ss_pred CCCCCEEEECCCCCCC-----cccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhhccccccchhhhhhccc
Confidence 3899999999997642 234899999999999999999999998877899999999887632100000 0
Q ss_pred cc-------ccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcc
Q psy13409 170 DI-------NLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNH 242 (330)
Q Consensus 170 ~~-------~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (330)
+. +...+.++...|++||++++.++++++.|++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~---------------------------------------- 174 (257)
T 1fjh_A 135 EEAKARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWG---------------------------------------- 174 (257)
T ss_dssp CHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHH----------------------------------------
T ss_pred chhhhhhhhhcccCCCCccHHHHHHHHHHHHHHHHHHHHh----------------------------------------
Confidence 00 0001234678999999999999999999998
Q ss_pred cccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHH---HHHhhhhhccChHHHHHHHHHhhccccccccC
Q psy13409 243 YCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWL---YQRVGGLFIKSPLQGAQTTLYCALDKKCERET 319 (330)
Q Consensus 243 ~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~ 319 (330)
+ .||+||+|+||+|+|++.+............ ..++++ +.+|+|+|++++||+++ .++++|
T Consensus 175 ----------~---~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~dvA~~~~~l~~~-~~~~~t 238 (257)
T 1fjh_A 175 ----------E---AGVRLNTIAPGATETPLLQAGLQDPRYGESIAKFVPPMGR--RAEPSEMASVIAFLMSP-AASYVH 238 (257)
T ss_dssp ----------H---TTCEEEEEEECC---------------------CCCSTTS--CCCTHHHHHHHHHHTSG-GGTTCC
T ss_pred ----------h---cCeEEEEEeeCCCCCccchhhccchhHHHHHHhcccccCC--CCCHHHHHHHHHHHhCc-hhcCCc
Confidence 5 7999999999999999876541111111111 113333 78999999999999966 457999
Q ss_pred ceecccC
Q psy13409 320 GLYYAKA 326 (330)
Q Consensus 320 G~~~~~~ 326 (330)
|++|...
T Consensus 239 G~~~~vd 245 (257)
T 1fjh_A 239 GAQIVID 245 (257)
T ss_dssp SCEEEES
T ss_pred CCEEEEC
Confidence 9998654
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-31 Score=290.59 Aligned_cols=237 Identities=17% Similarity=0.113 Sum_probs=190.1
Q ss_pred CCCCCCCEEEEEcCCCc-hHHHHHHHHHHCCCEEEEE-ecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTG-IGKCTANELAKRGARVIMA-CRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRK 88 (330)
Q Consensus 11 ~~~~~gk~aLITGas~g-IG~aia~~L~~~G~~Vil~-~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~ 88 (330)
.++++||++|||||++| ||+++++.|+++|++|+++ .|+.+++++..+++.+.... .+.++.++.||+++.+++++
T Consensus 670 ~m~l~gKvaLVTGASsGgIG~aIA~~La~~GA~Vvl~~~R~~~~l~~~~~eL~~~~~~--~g~~v~~v~~DVsd~~sV~a 747 (1887)
T 2uv8_A 670 GVTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGA--KGSTLIVVPFNQGSKQDVEA 747 (1887)
T ss_dssp CBCCTTCEEEEESCCSSSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCC--TTCEEEEEECCTTCHHHHHH
T ss_pred cCCCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHHHHHHhhc--CCCeEEEEEecCCCHHHHHH
Confidence 45689999999999998 9999999999999999998 57777777777776543321 25689999999999999999
Q ss_pred HHHHHHhc-----CC-CeeEEEEcCCCCCC---CCCCC--hhhHHHhHHHHHHHHHHHHHHH--HHHHhhhCCCeEEEEc
Q psy13409 89 CAQEILDN-----ES-AIHLLINNAGVMMC---PRQLT--EDGYELQFATNHLGHYLFTLLL--LPRIIKSAPARIINLS 155 (330)
Q Consensus 89 l~~~i~~~-----~g-~iDvlInnAG~~~~---~~~~~--~~~~~~~l~vN~~g~~~l~~~~--l~~l~~~~~g~IV~iS 155 (330)
+++.+.+. +| ++|+||||||+... ..+.+ .++|+.++++|+.+++.+++.+ ++.|.+++.|+||++|
T Consensus 748 lv~~i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~~G~IVnIS 827 (1887)
T 2uv8_A 748 LIEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMS 827 (1887)
T ss_dssp HHHHHHSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCCEEEEEEEC
T ss_pred HHHHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCCCEEEEEc
Confidence 99999988 66 99999999998643 24566 7899999999999999999988 6778776668999999
Q ss_pred CCCcccCCCCCcccccccccCCCcchhhHHhHHHHHHH-HHHHHHHhcccccccccccCchhhcccccccchhhhhhhcc
Q psy13409 156 SLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILF-TTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDA 234 (330)
Q Consensus 156 S~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~-~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (330)
|..+..+ +...|++||+|+++| ++.++.+++
T Consensus 828 S~ag~~g----------------g~~aYaASKAAL~~Lttr~lA~ela-------------------------------- 859 (1887)
T 2uv8_A 828 PNHGTFG----------------GDGMYSESKLSLETLFNRWHSESWA-------------------------------- 859 (1887)
T ss_dssp SCTTCSS----------------CBTTHHHHHHHGGGHHHHHHHSSCT--------------------------------
T ss_pred ChHhccC----------------CCchHHHHHHHHHHHHHHHHHHHhC--------------------------------
Confidence 9887655 356899999999999 999999887
Q ss_pred cCCCCCcccccccccCCCCCCCCceeEEEeeCcccc-cCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccc
Q psy13409 235 NLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVD-TELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDK 313 (330)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~-t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~ 313 (330)
+ . |+||+|+||+|+ |++...... ........+. +..+|+|+|+.++||+++.
T Consensus 860 ------------------~---~-IrVNaV~PG~V~tT~m~~~~~~----~~~~~~~~pl-r~~sPEEVA~avlfLaSd~ 912 (1887)
T 2uv8_A 860 ------------------N---Q-LTVCGAIIGWTRGTGLMSANNI----IAEGIEKMGV-RTFSQKEMAFNLLGLLTPE 912 (1887)
T ss_dssp ------------------T---T-EEEEEEEECCEECC-----CCT----THHHHHTTSC-CCEEHHHHHHHHHGGGSHH
T ss_pred ------------------C---C-eEEEEEEecccccccccccchh----HHHHHHhcCC-CCCCHHHHHHHHHHHhCCC
Confidence 4 4 999999999999 888764211 1111222221 3569999999999999765
Q ss_pred cccccCceecc
Q psy13409 314 KCERETGLYYA 324 (330)
Q Consensus 314 ~~~~~~G~~~~ 324 (330)
.++++||+.+.
T Consensus 913 ~as~iTGq~I~ 923 (1887)
T 2uv8_A 913 VVELCQKSPVM 923 (1887)
T ss_dssp HHHHHHHSCEE
T ss_pred ccccccCcEEE
Confidence 36789999875
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-30 Score=282.68 Aligned_cols=237 Identities=18% Similarity=0.092 Sum_probs=189.8
Q ss_pred CCCCCCCEEEEEcCCCc-hHHHHHHHHHHCCCEEEEEe-cChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTG-IGKCTANELAKRGARVIMAC-RSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRK 88 (330)
Q Consensus 11 ~~~~~gk~aLITGas~g-IG~aia~~L~~~G~~Vil~~-R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~ 88 (330)
.++++||++|||||++| ||+++++.|+++|++|++++ |+.+.+.+..+++.+.... .+.++.++.||++|.+++++
T Consensus 647 ~m~L~gKvaLVTGASgGgIG~aIAr~LA~~GA~VVl~~~R~~~~l~~~a~eL~~el~~--~G~~v~~v~~DVsd~esV~a 724 (1878)
T 2uv9_A 647 GLTFQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQVTEYYQGIYARCGA--RGSQLVVVPFNQGSKQDVEA 724 (1878)
T ss_dssp CBCCTTCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCC--TTCEEEEEECCTTCHHHHHH
T ss_pred CCCCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCChHHHHHHHHHHHHHhhc--cCCeEEEEEcCCCCHHHHHH
Confidence 34689999999999999 99999999999999999995 6677776666666443211 25689999999999999999
Q ss_pred HHHHHHhc---CC-CeeEEEEcCCCCCC---CCCCC--hhhHHHhHHHHHHHHHHHHHH--HHHHHhhhCCCeEEEEcCC
Q psy13409 89 CAQEILDN---ES-AIHLLINNAGVMMC---PRQLT--EDGYELQFATNHLGHYLFTLL--LLPRIIKSAPARIINLSSL 157 (330)
Q Consensus 89 l~~~i~~~---~g-~iDvlInnAG~~~~---~~~~~--~~~~~~~l~vN~~g~~~l~~~--~l~~l~~~~~g~IV~iSS~ 157 (330)
+++++.+. +| ++|+||||||+... ..+.+ .++|+.++++|+.+++.+++. +++.|.+++.|+||++||.
T Consensus 725 lv~~i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~G~IVnISS~ 804 (1878)
T 2uv9_A 725 LVNYIYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPAQVILPLSPN 804 (1878)
T ss_dssp HHHHHHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCEEECCEECSC
T ss_pred HHHHHHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCCCEEEEEcch
Confidence 99999988 88 99999999998643 25666 799999999999999999877 6787876666899999999
Q ss_pred CcccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHH-hcccccccccccCchhhcccccccchhhhhhhcccC
Q psy13409 158 AHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKR-LQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANL 236 (330)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (330)
++..+ ....|++||+|+++|++.++.+ ++
T Consensus 805 ag~~g----------------g~~aYaASKAAL~aLt~~laAeEla---------------------------------- 834 (1878)
T 2uv9_A 805 HGTFG----------------NDGLYSESKLALETLFNRWYSESWG---------------------------------- 834 (1878)
T ss_dssp SSSSS----------------CCSSHHHHHHHHTTHHHHHHHSTTT----------------------------------
T ss_pred hhccC----------------CchHHHHHHHHHHHHHHHHHHHHcC----------------------------------
Confidence 88765 2468999999999999877654 65
Q ss_pred CCCCcccccccccCCCCCCCCceeEEEeeCcccc-cCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccc
Q psy13409 237 QTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVD-TELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKC 315 (330)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~-t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~ 315 (330)
+ +|+||+|+||+|+ |++.... ..........+. +..+|+|+|+.++||+++...
T Consensus 835 ----------------~----~IrVNaVaPG~V~gT~m~~~~----~~~~~~~~~~pl-r~~sPeEVA~avlfLaSd~a~ 889 (1878)
T 2uv9_A 835 ----------------N----YLTICGAVIGWTRGTGLMSAN----NLVAEGVEKLGV-RTFSQQEMAFNLLGLMAPAIV 889 (1878)
T ss_dssp ----------------T----TEEEEEEEECCBCCTTSCSHH----HHTHHHHHTTTC-CCBCHHHHHHHHHHHHSHHHH
T ss_pred ----------------C----CeEEEEEEecceecCcccccc----hhhHHHHHhcCC-CCCCHHHHHHHHHHHhCCccc
Confidence 3 4999999999999 9987541 111111222331 256999999999999976432
Q ss_pred cccCceecc
Q psy13409 316 ERETGLYYA 324 (330)
Q Consensus 316 ~~~~G~~~~ 324 (330)
+++||+.+.
T Consensus 890 s~iTGq~I~ 898 (1878)
T 2uv9_A 890 NLCQSDPVF 898 (1878)
T ss_dssp HHHTTSCEE
T ss_pred ccccCcEEE
Confidence 689999864
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=222.87 Aligned_cols=198 Identities=19% Similarity=0.145 Sum_probs=162.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
|+++||||+||||++++++|+++ +|++++|+.+++++..+++. . .++.+|++|++++++++++
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~~~~~~~~~~~--------~---~~~~~D~~~~~~~~~~~~~---- 63 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH--DLLLSGRRAGALAELAREVG--------A---RALPADLADELEAKALLEE---- 63 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS--EEEEECSCHHHHHHHHHHHT--------C---EECCCCTTSHHHHHHHHHH----
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHHHHHHHHHhcc--------C---cEEEeeCCCHHHHHHHHHh----
Confidence 68999999999999999999998 99999999887766554431 1 7889999999999999876
Q ss_pred CCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccc
Q psy13409 97 ESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLE 174 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~ 174 (330)
++++|++|||||..... .+.+.+++++.+++|+.+++.+++.+ .+++.++||++||..+..+.
T Consensus 64 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~iv~~sS~~~~~~~----------- 128 (207)
T 2yut_A 64 AGPLDLLVHAVGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHA----RFQKGARAVFFGAYPRYVQV----------- 128 (207)
T ss_dssp HCSEEEEEECCCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHC----CEEEEEEEEEECCCHHHHSS-----------
T ss_pred cCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHH----HhcCCcEEEEEcChhhccCC-----------
Confidence 67899999999986432 46788899999999999999999988 33446899999998876553
Q ss_pred cCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCCC
Q psy13409 175 KGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGA 254 (330)
Q Consensus 175 ~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (330)
++...|+++|++++.++++++.+++ +
T Consensus 129 ---~~~~~Y~~sK~a~~~~~~~~~~~~~--------------------------------------------------~- 154 (207)
T 2yut_A 129 ---PGFAAYAAAKGALEAYLEAARKELL--------------------------------------------------R- 154 (207)
T ss_dssp ---TTBHHHHHHHHHHHHHHHHHHHHHH--------------------------------------------------T-
T ss_pred ---CCcchHHHHHHHHHHHHHHHHHHHh--------------------------------------------------h-
Confidence 6788999999999999999999998 5
Q ss_pred CCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhcccc
Q psy13409 255 NITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKK 314 (330)
Q Consensus 255 ~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~ 314 (330)
.||++++|+||++.|++..... .+.+ ++.+|+|+|+.+++++.++.
T Consensus 155 --~gi~v~~v~pg~v~t~~~~~~~----------~~~~--~~~~~~dva~~~~~~~~~~~ 200 (207)
T 2yut_A 155 --EGVHLVLVRLPAVATGLWAPLG----------GPPK--GALSPEEAARKVLEGLFREP 200 (207)
T ss_dssp --TTCEEEEECCCCBCSGGGGGGT----------SCCT--TCBCHHHHHHHHHHHHC--C
T ss_pred --hCCEEEEEecCcccCCCccccC----------CCCC--CCCCHHHHHHHHHHHHhCCC
Confidence 7999999999999999843221 1122 37899999999999997654
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-31 Score=286.62 Aligned_cols=239 Identities=17% Similarity=0.134 Sum_probs=190.6
Q ss_pred CCCCCCCCEEEEEcCCCc-hHHHHHHHHHHCCCEEEEE-ecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHH
Q psy13409 10 ADTRLDGKTAIVTGSNTG-IGKCTANELAKRGARVIMA-CRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVR 87 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~g-IG~aia~~L~~~G~~Vil~-~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~ 87 (330)
+.++++||++|||||++| ||+++|+.|+++|++|+++ +|+.+.+++..+++.+.... .+.++.++.||+++.++++
T Consensus 470 ~~msL~GKvALVTGASgGGIGrAIAr~LA~~GA~VVL~~~R~~e~lee~a~eL~ael~a--~Ga~V~vV~~DVTD~esVe 547 (1688)
T 2pff_A 470 XXVTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGA--KGSTLIVVPFNQGSKQDVE 547 (1688)
T ss_dssp SCCCCCSCCEEECSCSSSSTHHHHHHHHHHHTCEEEEEESSCSTTTTTHHHHTTTTTCC--TTCEEEEEECCSSSTTHHH
T ss_pred cccccCCCEEEEECCChHHHHHHHHHHHHHCcCEEEEEeCCCHHHHHHHHHHHHHHhhc--CCCeEEEEEeCCCCHHHHH
Confidence 345689999999999998 9999999999999999998 57776666665555332111 2568999999999999999
Q ss_pred HHHHHHHhc-----CC-CeeEEEEcCCCCCCC---CCCC--hhhHHHhHHHHHHHHHHHHHHH--HHHHhhhCCCeEEEE
Q psy13409 88 KCAQEILDN-----ES-AIHLLINNAGVMMCP---RQLT--EDGYELQFATNHLGHYLFTLLL--LPRIIKSAPARIINL 154 (330)
Q Consensus 88 ~l~~~i~~~-----~g-~iDvlInnAG~~~~~---~~~~--~~~~~~~l~vN~~g~~~l~~~~--l~~l~~~~~g~IV~i 154 (330)
++++++.+. +| ++|+||||||+.... .+.+ .++|++++++|+.+++.+++.+ ++.|.+++.|+||++
T Consensus 548 aLVe~I~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krggGrIVnI 627 (1688)
T 2pff_A 548 ALIEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPM 627 (1688)
T ss_dssp HHHHHHHSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSCEEECCCC
T ss_pred HHHHHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCCCCEEEEE
Confidence 999999988 77 999999999986432 5566 8899999999999999999998 788877666899999
Q ss_pred cCCCcccCCCCCcccccccccCCCcchhhHHhHHHHHHH-HHHHHHHhcccccccccccCchhhcccccccchhhhhhhc
Q psy13409 155 SSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILF-TTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCD 233 (330)
Q Consensus 155 SS~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~-~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (330)
||.++..+ +..+|++||+|+++| ++.++.+++
T Consensus 628 SSiAG~~G----------------g~saYaASKAAL~aLttrsLAeEla------------------------------- 660 (1688)
T 2pff_A 628 SPNHGTFG----------------GDGMYSESKLSLETLFNRWHSESWA------------------------------- 660 (1688)
T ss_dssp CSCTTTSS----------------CBTTHHHHHHHHTHHHHHTTTSSCT-------------------------------
T ss_pred EChHhccC----------------CchHHHHHHHHHHHHHHHHHHHHcC-------------------------------
Confidence 99887655 356899999999999 788888877
Q ss_pred ccCCCCCcccccccccCCCCCCCCceeEEEeeCcccc-cCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhcc
Q psy13409 234 ANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVD-TELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALD 312 (330)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~-t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~ 312 (330)
+ . |+||+|+||+|+ |++.......... ....+. +..+|+|+|++++||+++
T Consensus 661 -------------------~---~-IRVNaVaPG~V~TT~M~~~~e~~~~~----l~~ipl-R~~sPEEVA~aIlFLaSd 712 (1688)
T 2pff_A 661 -------------------N---Q-LTVCGAIIGWTRGTGLMSANNIIAEG----IEKMGV-RTFSQKEMAFNLLGLLTP 712 (1688)
T ss_dssp -------------------T---T-EECCCCCCCCCCCCSSSCTTTTCSTT----TSSSSC-CCCCCCTTHHHHHHHTST
T ss_pred -------------------C---C-eEEEEEEECcCcCCcccCCchHHHHH----HHhCCC-CCCCHHHHHHHHHHHhCC
Confidence 4 4 999999999999 7876542111111 111121 256999999999999977
Q ss_pred ccccccCceeccc
Q psy13409 313 KKCERETGLYYAK 325 (330)
Q Consensus 313 ~~~~~~~G~~~~~ 325 (330)
..++++||+.+..
T Consensus 713 ~sAs~ITGq~I~V 725 (1688)
T 2pff_A 713 EVVELCQKSPVMA 725 (1688)
T ss_dssp THHHHHTTSCCCC
T ss_pred CccccccCcEEEE
Confidence 5467899998754
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-29 Score=221.60 Aligned_cols=194 Identities=14% Similarity=0.182 Sum_probs=163.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhcC
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNE 97 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~~ 97 (330)
+++||||+||||++++++|+ +|++|++++|+.+ .+.+|++++++++++++.+
T Consensus 5 ~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~-----------------------~~~~D~~~~~~~~~~~~~~---- 56 (202)
T 3d7l_A 5 KILLIGASGTLGSAVKERLE-KKAEVITAGRHSG-----------------------DVTVDITNIDSIKKMYEQV---- 56 (202)
T ss_dssp EEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS-----------------------SEECCTTCHHHHHHHHHHH----
T ss_pred EEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc-----------------------ceeeecCCHHHHHHHHHHh----
Confidence 79999999999999999999 9999999999853 3689999999999998775
Q ss_pred CCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccccccc
Q psy13409 98 SAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEK 175 (330)
Q Consensus 98 g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~ 175 (330)
+++|++|||||.... ..+.+.+++++.+++|+.+++.+++.+.+.|.+ +++||++||..+..+.
T Consensus 57 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~~~iv~~sS~~~~~~~------------ 122 (202)
T 3d7l_A 57 GKVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLND--KGSFTLTTGIMMEDPI------------ 122 (202)
T ss_dssp CCEEEEEECCCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEE--EEEEEEECCGGGTSCC------------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhcc--CCEEEEEcchhhcCCC------------
Confidence 789999999997643 256788999999999999999999999998754 3899999998776553
Q ss_pred CCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCCCC
Q psy13409 176 GYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGAN 255 (330)
Q Consensus 176 ~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (330)
+....|+++|++++.++++++.|+.
T Consensus 123 --~~~~~Y~~sK~~~~~~~~~~~~e~~----------------------------------------------------- 147 (202)
T 3d7l_A 123 --VQGASAAMANGAVTAFAKSAAIEMP----------------------------------------------------- 147 (202)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHTTSCS-----------------------------------------------------
T ss_pred --CccHHHHHHHHHHHHHHHHHHHHcc-----------------------------------------------------
Confidence 6778999999999999999998763
Q ss_pred CCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecc
Q psy13409 256 ITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYA 324 (330)
Q Consensus 256 ~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~ 324 (330)
.||++++|+||++.|++.... .......+.+|+|+|+.+++++ . ++++|+.|.
T Consensus 148 -~gi~v~~v~pg~v~~~~~~~~-----------~~~~~~~~~~~~dva~~~~~~~-~---~~~~G~~~~ 200 (202)
T 3d7l_A 148 -RGIRINTVSPNVLEESWDKLE-----------PFFEGFLPVPAAKVARAFEKSV-F---GAQTGESYQ 200 (202)
T ss_dssp -TTCEEEEEEECCBGGGHHHHG-----------GGSTTCCCBCHHHHHHHHHHHH-H---SCCCSCEEE
T ss_pred -CCeEEEEEecCccCCchhhhh-----------hhccccCCCCHHHHHHHHHHhh-h---ccccCceEe
Confidence 699999999999999975311 0111223789999999999887 2 367898775
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-29 Score=228.12 Aligned_cols=229 Identities=20% Similarity=0.086 Sum_probs=173.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
|++|||||+||||++++++|+++|++|++++|+.++++ . .+.+|+++.++++++++++
T Consensus 2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~---------------~----~~~~D~~~~~~~~~~~~~~--- 59 (255)
T 2dkn_A 2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIE---------------A----DLSTPGGRETAVAAVLDRC--- 59 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEE---------------C----CTTSHHHHHHHHHHHHHHH---
T ss_pred cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHcc---------------c----cccCCcccHHHHHHHHHHc---
Confidence 68999999999999999999999999999999865321 0 1678999999998888754
Q ss_pred CCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc-----c
Q psy13409 97 ESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED-----I 171 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~-----~ 171 (330)
.+++|++|||||.... .+.++..+++|+.+++++++.+++.|.+.+.++||++||..+..+........ .
T Consensus 60 ~~~~d~vi~~Ag~~~~-----~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~~~~~~~~ 134 (255)
T 2dkn_A 60 GGVLDGLVCCAGVGVT-----AANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAAELPMVEAMLAG 134 (255)
T ss_dssp TTCCSEEEECCCCCTT-----SSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSTTGGGCHHHHHHHHT
T ss_pred CCCccEEEECCCCCCc-----chhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEeccccccccccccchhhhhccc
Confidence 3689999999997642 34588999999999999999999999887779999999988765421000000 0
Q ss_pred cc-------ccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccc
Q psy13409 172 NL-------EKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYC 244 (330)
Q Consensus 172 ~~-------~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
+. ....++...|++||++++.+++.++.+++
T Consensus 135 ~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~~~~~~~------------------------------------------ 172 (255)
T 2dkn_A 135 DEARAIELAEQQGQTHLAYAGSKYAVTCLARRNVVDWA------------------------------------------ 172 (255)
T ss_dssp CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHTHHHHH------------------------------------------
T ss_pred chhhhhhhccccCCcchhHHHHHHHHHHHHHHHHHHHh------------------------------------------
Confidence 00 00124677999999999999999999998
Q ss_pred cccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHh--hhhhccChHHHHHHHHHhhccccccccCcee
Q psy13409 245 KNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRV--GGLFIKSPLQGAQTTLYCALDKKCERETGLY 322 (330)
Q Consensus 245 ~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~ 322 (330)
. .||++++|+||+|.|++.............. ... ...++.+|+|+|+++++++++ .+++++|++
T Consensus 173 --------~---~gi~v~~v~pg~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dva~~~~~l~~~-~~~~~~G~~ 239 (255)
T 2dkn_A 173 --------G---RGVRLNVVAPGAVETPLLQASKADPRYGEST-RRFVAPLGRGSEPREVAEAIAFLLGP-QASFIHGSV 239 (255)
T ss_dssp --------H---TTCEEEEEEECCBCSHHHHHHHHCTTTHHHH-HSCCCTTSSCBCHHHHHHHHHHHHSG-GGTTCCSCE
T ss_pred --------h---cCcEEEEEcCCcccchhhhhcccchhhHHHH-HHHHHHhcCCCCHHHHHHHHHHHhCC-CcccceeeE
Confidence 4 7999999999999999876431111111111 111 222378999999999999966 345889998
Q ss_pred cccCC
Q psy13409 323 YAKAD 327 (330)
Q Consensus 323 ~~~~~ 327 (330)
|...+
T Consensus 240 ~~v~g 244 (255)
T 2dkn_A 240 LFVDG 244 (255)
T ss_dssp EEEST
T ss_pred EEecC
Confidence 87543
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=246.70 Aligned_cols=216 Identities=13% Similarity=0.130 Sum_probs=176.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCE-EEEE-ecCh-------------hHHHHHHHHHHHhhcccCCCCeEEEEEcc
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGAR-VIMA-CRSL-------------EKAETAADDIRTSLKDVKDAGEVVIRQLD 79 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~-Vil~-~R~~-------------~~l~~~~~~l~~~~~~~~~~~~v~~i~~D 79 (330)
+++++|||||+||||+++++.|+++|++ |+++ +|+. +.++++.++++.. +.++.++.||
T Consensus 250 ~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~------g~~v~~~~~D 323 (525)
T 3qp9_A 250 ADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADL------GATATVVTCD 323 (525)
T ss_dssp TTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHH------TCEEEEEECC
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhc------CCEEEEEECC
Confidence 6899999999999999999999999996 7777 8983 4556666666653 6789999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcC
Q psy13409 80 LSSLKSVRKCAQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSS 156 (330)
Q Consensus 80 ls~~~si~~l~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS 156 (330)
++|.++++++++++. .++++|+||||||+.... .+.+.++++.++++|+.|++++.+.+.+.+.+++ .++||++||
T Consensus 324 vtd~~~v~~~~~~i~-~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~iV~~SS 402 (525)
T 3qp9_A 324 LTDAEAAARLLAGVS-DAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSS 402 (525)
T ss_dssp TTSHHHHHHHHHTSC-TTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCEEEEEEE
T ss_pred CCCHHHHHHHHHHHH-hcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCEEEEECC
Confidence 999999999999988 789999999999987543 6789999999999999999999999999987766 689999999
Q ss_pred CCcccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccC
Q psy13409 157 LAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANL 236 (330)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (330)
.++.++. ++...|+++|+++++|+ .+++
T Consensus 403 ~a~~~g~--------------~g~~~YaaaKa~l~~lA----~~~~---------------------------------- 430 (525)
T 3qp9_A 403 VAAIWGG--------------AGQGAYAAGTAFLDALA----GQHR---------------------------------- 430 (525)
T ss_dssp GGGTTCC--------------TTCHHHHHHHHHHHHHH----TSCC----------------------------------
T ss_pred HHHcCCC--------------CCCHHHHHHHHHHHHHH----HHHH----------------------------------
Confidence 9999886 78899999999998874 4444
Q ss_pred CCCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhcccc
Q psy13409 237 QTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKK 314 (330)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~ 314 (330)
. .||++++|+||+++|+|..... ....+ ...+. ...+|+|+++.+.+++..+.
T Consensus 431 ----------------~---~gi~v~sI~pG~~~tgm~~~~~----~~~~~-~~~g~-~~l~pee~a~~l~~~l~~~~ 483 (525)
T 3qp9_A 431 ----------------A---DGPTVTSVAWSPWEGSRVTEGA----TGERL-RRLGL-RPLAPATALTALDTALGHGD 483 (525)
T ss_dssp ----------------S---SCCEEEEEEECCBTTSGGGSSH----HHHHH-HHTTB-CCBCHHHHHHHHHHHHHHTC
T ss_pred ----------------h---CCCCEEEEECCccccccccchh----hHHHH-HhcCC-CCCCHHHHHHHHHHHHhCCC
Confidence 4 7999999999999999875321 11111 11221 25799999999999987653
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-27 Score=273.99 Aligned_cols=221 Identities=15% Similarity=0.064 Sum_probs=169.3
Q ss_pred CCCCCCEEEEEcCCCc-hHHHHHHHHHHCCCEEEEEecChhH-----HHHHHHHHHHhhcccCCCCeEEEEEccCCCHHH
Q psy13409 12 TRLDGKTAIVTGSNTG-IGKCTANELAKRGARVIMACRSLEK-----AETAADDIRTSLKDVKDAGEVVIRQLDLSSLKS 85 (330)
Q Consensus 12 ~~~~gk~aLITGas~g-IG~aia~~L~~~G~~Vil~~R~~~~-----l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~s 85 (330)
..++||++|||||++| ||+++|+.|++.|++|++++|+.+. ++++.+++.. .+.++..+.||++++++
T Consensus 2132 ~~l~gKvaLVTGAs~GsIG~AiA~~La~~GA~Vvi~~r~~~~~~~~~~~~l~~~l~~------~G~~~~~v~~Dvtd~~~ 2205 (3089)
T 3zen_D 2132 XXXXDEVAVVTGASKGSIAASVVGQLLDGGATVIATTSRLDDDRLAFYKQLYRDHAR------FDATLWVVPANMASYSD 2205 (3089)
T ss_dssp CCCCCCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESCCSHHHHHHHHHHHHHHCC------TTCEEEEEECCTTCHHH
T ss_pred ccCCCCEEEEeCCChhHHHHHHHHHHHHCCCEEEEEeCChhhhhhHHHHHHHHHHhh------cCCeEEEEEecCCCHHH
Confidence 4589999999999999 9999999999999999999998765 4444444322 35688999999999999
Q ss_pred HHHHHHHHHh----cCCCeeEEEEcCCCC----C---CCCCCChhhHHHh----HHHHHHHHHHHHHHHHHHHhhhCCC-
Q psy13409 86 VRKCAQEILD----NESAIHLLINNAGVM----M---CPRQLTEDGYELQ----FATNHLGHYLFTLLLLPRIIKSAPA- 149 (330)
Q Consensus 86 i~~l~~~i~~----~~g~iDvlInnAG~~----~---~~~~~~~~~~~~~----l~vN~~g~~~l~~~~l~~l~~~~~g- 149 (330)
++++++++.+ .+|++|+||||||+. . ...+.+.++|+.. +++|+.+.+.+++.+.+.|.+++.+
T Consensus 2206 v~~lv~~i~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~~~~~g~ 2285 (3089)
T 3zen_D 2206 IDKLVEWVGTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAERDIAS 2285 (3089)
T ss_dssp HHHHHHHHTSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 9999999988 889999999999981 1 1223344555544 9999999999999999999876532
Q ss_pred --e-EEEEcCCCcccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHH--hcccccccccccCchhhccccccc
Q psy13409 150 --R-IINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKR--LQVNFSRHYSCRLPKEILGRTKRF 224 (330)
Q Consensus 150 --~-IV~iSS~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~--~~~~~~~~~~~~~~~~~~~~~~~~ 224 (330)
. |+..|+..+.. +...+|++||+|+++|+++||.| ++
T Consensus 2286 ~~~ii~~~ss~~g~~----------------g~~~aYsASKaAl~~LtrslA~E~~~a---------------------- 2327 (3089)
T 3zen_D 2286 RLHVVLPGSPNRGMF----------------GGDGAYGEAKSALDALENRWSAEKSWA---------------------- 2327 (3089)
T ss_dssp CEEEEEEECSSTTSC----------------SSCSSHHHHGGGHHHHHHHHHHCSTTT----------------------
T ss_pred eeEEEEECCcccccC----------------CCchHHHHHHHHHHHHHHHHHhccccC----------------------
Confidence 2 23333332222 34558999999999999999999 66
Q ss_pred chhhhhhhcccCCCCCcccccccccCCCCCCCCceeEEEeeCcccc-cCcccccCCCchhhHHHHHHhhhhhccChHHHH
Q psy13409 225 SNLTILLCDANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVD-TELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGA 303 (330)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~-t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a 303 (330)
++|+||+|+||+|+ |++...... ........+. +..+|+|+|
T Consensus 2328 --------------------------------~~IrVn~v~PG~v~tT~l~~~~~~----~~~~~~~~~~-r~~~PeEIA 2370 (3089)
T 3zen_D 2328 --------------------------------ERVSLAHALIGWTKGTGLMGQNDA----IVSAVEEAGV-TTYTTDEMA 2370 (3089)
T ss_dssp --------------------------------TTEEEEEEECCCEECSTTTTTTTT----THHHHGGGSC-BCEEHHHHH
T ss_pred --------------------------------CCeEEEEEeecccCCCcccccchh----HHHHHHhcCC-CCCCHHHHH
Confidence 67999999999999 776543221 1112222221 245999999
Q ss_pred HHHHHhhccc
Q psy13409 304 QTTLYCALDK 313 (330)
Q Consensus 304 ~~~~~l~~~~ 313 (330)
.+++||+++.
T Consensus 2371 ~avlfLaS~~ 2380 (3089)
T 3zen_D 2371 AMLLDLCTVE 2380 (3089)
T ss_dssp HHHHHTTSHH
T ss_pred HHHHHHhChh
Confidence 9999999764
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=224.56 Aligned_cols=213 Identities=16% Similarity=0.143 Sum_probs=169.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecCh---hHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSL---EKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~---~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.++++|||||+||||++++++|+++|+ +|++++|+. +..+++.+++.. .+.++.++.||++|.+++++++
T Consensus 238 ~~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~------~g~~v~~~~~Dvtd~~~v~~~~ 311 (496)
T 3mje_A 238 VHGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQ------LGVRVTIAACDAADREALAALL 311 (496)
T ss_dssp CCSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHH------TTCEEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHh------cCCeEEEEEccCCCHHHHHHHH
Confidence 359999999999999999999999999 899999974 345666666665 3789999999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCC-C--CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCc
Q psy13409 91 QEILDNESAIHLLINNAGVM-M--CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~-~--~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~ 167 (330)
+++.+. +++|++|||||+. . +..+.+.++++..+++|+.+++++.+.+.+ ...++||++||.++.++.
T Consensus 312 ~~i~~~-g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~----~~~~~iV~~SS~a~~~g~---- 382 (496)
T 3mje_A 312 AELPED-APLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTAD----LDLDAFVLFSSGAAVWGS---- 382 (496)
T ss_dssp HTCCTT-SCEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTT----SCCSEEEEEEEHHHHTTC----
T ss_pred HHHHHh-CCCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhc----cCCCEEEEEeChHhcCCC----
Confidence 988776 7899999999987 3 236889999999999999999998887654 346899999999999886
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
+++..|+++|+++++|++.+ +
T Consensus 383 ----------~g~~~YaAaKa~ldala~~~----~--------------------------------------------- 403 (496)
T 3mje_A 383 ----------GGQPGYAAANAYLDALAEHR----R--------------------------------------------- 403 (496)
T ss_dssp ----------TTCHHHHHHHHHHHHHHHHH----H---------------------------------------------
T ss_pred ----------CCcHHHHHHHHHHHHHHHHH----H---------------------------------------------
Confidence 78899999999999887754 3
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhcccc
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKK 314 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~ 314 (330)
. .||++++|+||++.|........ ..+.+ ...+. ...+|+++++.+.+++..+.
T Consensus 404 -----~---~Gi~v~sV~pG~w~~~gm~~~~~---~~~~l-~~~g~-~~l~pe~~~~~l~~~l~~~~ 457 (496)
T 3mje_A 404 -----S---LGLTASSVAWGTWGEVGMATDPE---VHDRL-VRQGV-LAMEPEHALGALDQMLENDD 457 (496)
T ss_dssp -----H---TTCCCEEEEECEESSSCC---------CHHH-HHTTE-EEECHHHHHHHHHHHHHHTC
T ss_pred -----h---cCCeEEEEECCcccCCccccChH---HHHHH-HhcCC-CCCCHHHHHHHHHHHHcCCC
Confidence 3 68999999999987664432211 11111 11121 24699999999999986543
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.4e-26 Score=239.18 Aligned_cols=214 Identities=19% Similarity=0.217 Sum_probs=173.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHH-HCCC-EEEEEecC---hhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELA-KRGA-RVIMACRS---LEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~-~~G~-~Vil~~R~---~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
.+|++|||||++|||+++++.|+ ++|+ +|++++|+ .+.+++..++++. .+.++.++.||++|+++++++
T Consensus 529 ~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~------~G~~v~~~~~Dvsd~~~v~~~ 602 (795)
T 3slk_A 529 AAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTA------YGAEVSLQACDVADRETLAKV 602 (795)
T ss_dssp TTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHHH------TTCEEEEEECCTTCHHHHHHH
T ss_pred cccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHHh------cCCcEEEEEeecCCHHHHHHH
Confidence 68999999999999999999999 7999 69999999 4456677777765 378999999999999999999
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCc
Q psy13409 90 AQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~ 167 (330)
++++.+.+ +||++|||||+.... .+++.++|+..+++|+.|++++.+.+.+.| +||++||.++..|.
T Consensus 603 ~~~~~~~~-~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~~~l------~iV~~SS~ag~~g~---- 671 (795)
T 3slk_A 603 LASIPDEH-PLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELIDPDV------ALVLFSSVSGVLGS---- 671 (795)
T ss_dssp HHTSCTTS-CEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSCTTS------EEEEEEETHHHHTC----
T ss_pred HHHHHHhC-CCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHhhCC------EEEEEccHHhcCCC----
Confidence 99988776 999999999987643 688999999999999999999999997766 89999999999886
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
+++..|+++|+ |+++||++++
T Consensus 672 ----------~g~~~YaAaka----~~~alA~~~~--------------------------------------------- 692 (795)
T 3slk_A 672 ----------GGQGNYAAANS----FLDALAQQRQ--------------------------------------------- 692 (795)
T ss_dssp ----------SSCHHHHHHHH----HHHHHHHHHH---------------------------------------------
T ss_pred ----------CCCHHHHHHHH----HHHHHHHHHH---------------------------------------------
Confidence 78999999995 6677777777
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccc
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKC 315 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~ 315 (330)
. .||++|+|+||+++|+........ .........+. ...+++|+.+.+.+++..+..
T Consensus 693 -----~---~Gi~v~sI~pG~v~t~g~~~~~~~--~~~~~~~~~g~-~~l~~~e~~~~~~~~l~~~~~ 749 (795)
T 3slk_A 693 -----S---RGLPTRSLAWGPWAEHGMASTLRE--AEQDRLARSGL-LPISTEEGLSQFDAACGGAHT 749 (795)
T ss_dssp -----H---TTCCEEEEEECCCSCCCHHHHHHH--HHHHHHHHTTB-CCCCHHHHHHHHHHHHTSSCS
T ss_pred -----H---cCCeEEEEECCeECcchhhccccH--HHHHHHHhcCC-CCCCHHHHHHHHHHHHhCCCc
Confidence 4 799999999999998864332111 01111112222 256788888888887766543
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-24 Score=197.90 Aligned_cols=155 Identities=19% Similarity=0.149 Sum_probs=127.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
|++|++|||||+||||++++++|+++|++|++++|+..+. ...++.++.+|++|.++++++++
T Consensus 1 m~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~---------------~~~~~~~~~~Dl~d~~~~~~~~~-- 63 (267)
T 3rft_A 1 MAMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDP---------------AGPNEECVQCDLADANAVNAMVA-- 63 (267)
T ss_dssp CCEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCC---------------CCTTEEEEECCTTCHHHHHHHHT--
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCccc---------------cCCCCEEEEcCCCCHHHHHHHHc--
Confidence 3578999999999999999999999999999999987532 14578999999999999988876
Q ss_pred HhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccccc
Q psy13409 94 LDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINL 173 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~ 173 (330)
.+|+||||||.. ..+.++..+++|+.+++++++++.+ .+.++||++||..+.... ....+++.
T Consensus 64 -----~~D~vi~~Ag~~------~~~~~~~~~~~N~~g~~~l~~a~~~----~~~~~iv~~SS~~~~g~~--~~~~~~~e 126 (267)
T 3rft_A 64 -----GCDGIVHLGGIS------VEKPFEQILQGNIIGLYNLYEAARA----HGQPRIVFASSNHTIGYY--PQTERLGP 126 (267)
T ss_dssp -----TCSEEEECCSCC------SCCCHHHHHHHHTHHHHHHHHHHHH----TTCCEEEEEEEGGGGTTS--BTTSCBCT
T ss_pred -----CCCEEEECCCCc------CcCCHHHHHHHHHHHHHHHHHHHHH----cCCCEEEEEcchHHhCCC--CCCCCCCC
Confidence 579999999984 4567889999999999999998843 456899999998765332 22334555
Q ss_pred ccCCCcchhhHHhHHHHHHHHHHHHHHhc
Q psy13409 174 EKGYSATGAYGRSKLANILFTTELAKRLQ 202 (330)
Q Consensus 174 ~~~~~~~~~Y~asK~a~~~~~~~la~~~~ 202 (330)
..+..+...|+.||++++.+++.++.+++
T Consensus 127 ~~~~~~~~~Y~~sK~~~e~~~~~~a~~~g 155 (267)
T 3rft_A 127 DVPARPDGLYGVSKCFGENLARMYFDKFG 155 (267)
T ss_dssp TSCCCCCSHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHhC
Confidence 55667788999999999999999998753
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.5e-24 Score=212.62 Aligned_cols=211 Identities=18% Similarity=0.203 Sum_probs=166.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChh---HHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLE---KAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~---~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.++++|||||+||||++++++|+++|+ +|++++|+.. .++++.+++.. .+.++.++.||++|.+++++++
T Consensus 225 ~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~------~g~~v~~~~~Dv~d~~~v~~~~ 298 (486)
T 2fr1_A 225 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEA------LGARTTVAACDVTDRESVRELL 298 (486)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHH------TTCEEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHh------cCCEEEEEEeCCCCHHHHHHHH
Confidence 689999999999999999999999999 5999999875 35556666654 3678999999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 91 QEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
+.+ +.++++|++|||||+.... .+.+.++++..+++|+.+++++.+.+.+ .+.++||++||.++.++.
T Consensus 299 ~~i-~~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~----~~~~~~V~~SS~a~~~g~----- 368 (486)
T 2fr1_A 299 GGI-GDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRE----LDLTAFVLFSSFASAFGA----- 368 (486)
T ss_dssp HTS-CTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTT----SCCSEEEEEEEHHHHTCC-----
T ss_pred HHH-HhcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCc----CCCCEEEEEcChHhcCCC-----
Confidence 988 5678999999999987543 5778999999999999999999887643 356899999999988885
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
++...|+++|++++.|++.+ +
T Consensus 369 ---------~g~~~Yaaaka~l~~la~~~----~---------------------------------------------- 389 (486)
T 2fr1_A 369 ---------PGLGGYAPGNAYLDGLAQQR----R---------------------------------------------- 389 (486)
T ss_dssp ---------TTCTTTHHHHHHHHHHHHHH----H----------------------------------------------
T ss_pred ---------CCCHHHHHHHHHHHHHHHHH----H----------------------------------------------
Confidence 67889999999999886644 3
Q ss_pred cCCCCCCCCceeEEEeeCcccccC-cccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhcccc
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTE-LSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKK 314 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~ 314 (330)
. .|+++++|+||++.++ |...... ..+ ... .....+++|+++.+++++..+.
T Consensus 390 ----~---~gi~v~~i~pG~~~~~gm~~~~~~-----~~~-~~~-g~~~i~~e~~a~~l~~~l~~~~ 442 (486)
T 2fr1_A 390 ----S---DGLPATAVAWGTWAGSGMAEGPVA-----DRF-RRH-GVIEMPPETACRALQNALDRAE 442 (486)
T ss_dssp ----H---TTCCCEEEEECCBC-----------------C-TTT-TEECBCHHHHHHHHHHHHHTTC
T ss_pred ----h---cCCeEEEEECCeeCCCcccchhHH-----HHH-Hhc-CCCCCCHHHHHHHHHHHHhCCC
Confidence 2 6899999999999886 3322110 000 111 1236799999999999986543
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-23 Score=209.11 Aligned_cols=208 Identities=21% Similarity=0.265 Sum_probs=168.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChh---HHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLE---KAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~---~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.++++|||||+||||++++++|+++|+ +|++++|+.. .+++..+++.. .+.++.++.||++|.+++++++
T Consensus 258 ~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~------~g~~v~~~~~Dvtd~~~v~~~~ 331 (511)
T 2z5l_A 258 PSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRG------HGCEVVHAACDVAERDALAALV 331 (511)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHT------TTCEEEEEECCSSCHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHh------cCCEEEEEEeCCCCHHHHHHHH
Confidence 689999999999999999999999999 6999999864 35555566654 3678999999999999999988
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 91 QEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
+. +++|++|||||+.... .+.+.++++..+++|+.+++++.+.+.+. .+.++||++||.++.++.
T Consensus 332 ~~-----~~ld~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~---~~~~~~V~~SS~a~~~g~----- 398 (511)
T 2z5l_A 332 TA-----YPPNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADI---KGLDAFVLFSSVTGTWGN----- 398 (511)
T ss_dssp HH-----SCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSC---TTCCCEEEEEEGGGTTCC-----
T ss_pred hc-----CCCcEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhc---cCCCEEEEEeCHHhcCCC-----
Confidence 76 6899999999987543 57788999999999999999998876432 145899999999988885
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
++...|+++|++++.|++.+ .
T Consensus 399 ---------~g~~~YaaaKa~ld~la~~~----~---------------------------------------------- 419 (511)
T 2z5l_A 399 ---------AGQGAYAAANAALDALAERR----R---------------------------------------------- 419 (511)
T ss_dssp ---------TTBHHHHHHHHHHHHHHHHH----H----------------------------------------------
T ss_pred ---------CCCHHHHHHHHHHHHHHHHH----H----------------------------------------------
Confidence 67899999999999998864 3
Q ss_pred cCCCCCCCCceeEEEeeCccc-ccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhcccc
Q psy13409 249 FHPPGANITNVNTYAVHPGVV-DTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKK 314 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v-~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~ 314 (330)
. .|+++++|+||++ +|+|..... ...+ ... .....+|+|+++.++.++..+.
T Consensus 420 ----~---~gi~v~sv~pG~~~~tgm~~~~~-----~~~~-~~~-g~~~l~~e~~a~~l~~al~~~~ 472 (511)
T 2z5l_A 420 ----A---AGLPATSVAWGLWGGGGMAAGAG-----EESL-SRR-GLRAMDPDAAVDALLGAMGRND 472 (511)
T ss_dssp ----T---TTCCCEEEEECCBCSTTCCCCHH-----HHHH-HHH-TBCCBCHHHHHHHHHHHHHHTC
T ss_pred ----H---cCCcEEEEECCcccCCccccccc-----HHHH-Hhc-CCCCCCHHHHHHHHHHHHhCCC
Confidence 3 6899999999998 787765421 1111 111 2236899999999999986654
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.1e-24 Score=190.31 Aligned_cols=204 Identities=16% Similarity=0.119 Sum_probs=150.2
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeE-EEEEccCCCHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV-VIRQLDLSSLKSVRKC 89 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v-~~i~~Dls~~~si~~l 89 (330)
..+++||++|||||+|+||++++++|+++|++|++++|+.+++++..+ .++ .++.+|++ +
T Consensus 16 ~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~------------~~~~~~~~~Dl~--~----- 76 (236)
T 3e8x_A 16 NLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE------------RGASDIVVANLE--E----- 76 (236)
T ss_dssp -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH------------TTCSEEEECCTT--S-----
T ss_pred ccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh------------CCCceEEEcccH--H-----
Confidence 356899999999999999999999999999999999999887654321 246 78999998 2
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 90 AQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
.+.+.++.+|++|||||... .++++..+++|+.+++++++++. +.+.++||++||..+..+.
T Consensus 77 --~~~~~~~~~D~vi~~ag~~~------~~~~~~~~~~n~~~~~~l~~a~~----~~~~~~iv~~SS~~~~~~~------ 138 (236)
T 3e8x_A 77 --DFSHAFASIDAVVFAAGSGP------HTGADKTILIDLWGAIKTIQEAE----KRGIKRFIMVSSVGTVDPD------ 138 (236)
T ss_dssp --CCGGGGTTCSEEEECCCCCT------TSCHHHHHHTTTHHHHHHHHHHH----HHTCCEEEEECCTTCSCGG------
T ss_pred --HHHHHHcCCCEEEECCCCCC------CCCccccchhhHHHHHHHHHHHH----HcCCCEEEEEecCCCCCCC------
Confidence 23344567999999999763 35688899999999988888773 3456899999996543321
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
..+.....|+.+|++++.+++ .
T Consensus 139 -----~~~~~~~~Y~~sK~~~e~~~~------~----------------------------------------------- 160 (236)
T 3e8x_A 139 -----QGPMNMRHYLVAKRLADDELK------R----------------------------------------------- 160 (236)
T ss_dssp -----GSCGGGHHHHHHHHHHHHHHH------H-----------------------------------------------
T ss_pred -----CChhhhhhHHHHHHHHHHHHH------H-----------------------------------------------
Confidence 011467799999999988765 3
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceeccc
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAK 325 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~ 325 (330)
.||+++.|+||+|.|+.......... ...+...+.+++|+|+++++++.++. .+|+.|.-
T Consensus 161 -------~gi~~~~lrpg~v~~~~~~~~~~~~~------~~~~~~~~i~~~Dva~~~~~~~~~~~---~~g~~~~v 220 (236)
T 3e8x_A 161 -------SSLDYTIVRPGPLSNEESTGKVTVSP------HFSEITRSITRHDVAKVIAELVDQQH---TIGKTFEV 220 (236)
T ss_dssp -------SSSEEEEEEECSEECSCCCSEEEEES------SCSCCCCCEEHHHHHHHHHHHTTCGG---GTTEEEEE
T ss_pred -------CCCCEEEEeCCcccCCCCCCeEEecc------CCCcccCcEeHHHHHHHHHHHhcCcc---ccCCeEEE
Confidence 68999999999999986533221110 00112236789999999999997653 46777654
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=99.91 E-value=9.3e-23 Score=191.37 Aligned_cols=227 Identities=14% Similarity=0.074 Sum_probs=163.1
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEE-EccCCCHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR-QLDLSSLKSVRKCAQ 91 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i-~~Dls~~~si~~l~~ 91 (330)
.+++|++|||||+|+||++++++|+++|++|++++|+.+..+.+.+.+... .+.++.++ .+|+++.++++++++
T Consensus 8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~~D~~d~~~~~~~~~ 82 (342)
T 1y1p_A 8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAK-----YPGRFETAVVEDMLKQGAYDEVIK 82 (342)
T ss_dssp SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH-----STTTEEEEECSCTTSTTTTTTTTT
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhcc-----CCCceEEEEecCCcChHHHHHHHc
Confidence 478999999999999999999999999999999999988766665555432 13568888 899999887766543
Q ss_pred HHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCC-CCCcccc
Q psy13409 92 EILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGD-GSMHFED 170 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~-~~~~~~~ 170 (330)
.+|++||+||..... +++++.+++|+.++.++++++.+ ..+.++||++||....... +.....+
T Consensus 83 -------~~d~vih~A~~~~~~-----~~~~~~~~~n~~g~~~ll~~~~~---~~~~~~iv~~SS~~~~~~~~~~~~~~~ 147 (342)
T 1y1p_A 83 -------GAAGVAHIASVVSFS-----NKYDEVVTPAIGGTLNALRAAAA---TPSVKRFVLTSSTVSALIPKPNVEGIY 147 (342)
T ss_dssp -------TCSEEEECCCCCSCC-----SCHHHHHHHHHHHHHHHHHHHHT---CTTCCEEEEECCGGGTCCCCTTCCCCE
T ss_pred -------CCCEEEEeCCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHh---CCCCcEEEEeccHHHhcCCCCCCCCcc
Confidence 689999999976432 35678899999999999888754 2345899999997654321 1000011
Q ss_pred ccccc----------------CCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcc
Q psy13409 171 INLEK----------------GYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDA 234 (330)
Q Consensus 171 ~~~~~----------------~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (330)
+++.. +..+...|+.||++.+.+++.++.+++
T Consensus 148 ~~E~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~-------------------------------- 195 (342)
T 1y1p_A 148 LDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENK-------------------------------- 195 (342)
T ss_dssp ECTTCCCHHHHHHHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHC--------------------------------
T ss_pred cCccccCchhhhhhccccccccccchHHHHHHHHHHHHHHHHHHHhcC--------------------------------
Confidence 22111 123567899999999999999999886
Q ss_pred cCCCCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHH--------h---hhhhccChHHHH
Q psy13409 235 NLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQR--------V---GGLFIKSPLQGA 303 (330)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~--------~---~~~~~~~~~e~a 303 (330)
.++++++|.||.|.++.................. . ....+..++|+|
T Consensus 196 ----------------------~~~~~~~~rp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva 253 (342)
T 1y1p_A 196 ----------------------PHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALMPPQYYVSAVDIG 253 (342)
T ss_dssp ----------------------CSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHHHHTCCSEEEEEHHHHH
T ss_pred ----------------------CCceEEEEcCCceECCCCCCCCCCccHHHHHHHHHcCCCccccccCCcCCEeEHHHHH
Confidence 5899999999999998754322110001111000 1 122367899999
Q ss_pred HHHHHhhccc
Q psy13409 304 QTTLYCALDK 313 (330)
Q Consensus 304 ~~~~~l~~~~ 313 (330)
+++++++..+
T Consensus 254 ~a~~~~~~~~ 263 (342)
T 1y1p_A 254 LLHLGCLVLP 263 (342)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHHcCc
Confidence 9999998653
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5.4e-23 Score=184.63 Aligned_cols=197 Identities=14% Similarity=0.030 Sum_probs=144.2
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCC--EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGA--RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
++++|+++||||+|+||++++++|+++|+ +|++++|+.+++... ...++.++.+|+++++++++++
T Consensus 15 ~m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~------------~~~~~~~~~~D~~d~~~~~~~~ 82 (242)
T 2bka_A 15 RMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE------------AYKNVNQEVVDFEKLDDYASAF 82 (242)
T ss_dssp HHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSG------------GGGGCEEEECCGGGGGGGGGGG
T ss_pred hhcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCcccc------------ccCCceEEecCcCCHHHHHHHh
Confidence 36789999999999999999999999999 999999987643211 0135788999999998877665
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 91 QEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
+ .+|++|||||.... ...++..+++|+.++..+++++ .+.+.++||++||..+..
T Consensus 83 ~-------~~d~vi~~ag~~~~-----~~~~~~~~~~n~~~~~~~~~~~----~~~~~~~iv~~SS~~~~~--------- 137 (242)
T 2bka_A 83 Q-------GHDVGFCCLGTTRG-----KAGAEGFVRVDRDYVLKSAELA----KAGGCKHFNLLSSKGADK--------- 137 (242)
T ss_dssp S-------SCSEEEECCCCCHH-----HHHHHHHHHHHTHHHHHHHHHH----HHTTCCEEEEECCTTCCT---------
T ss_pred c-------CCCEEEECCCcccc-----cCCcccceeeeHHHHHHHHHHH----HHCCCCEEEEEccCcCCC---------
Confidence 3 68999999997532 2456788999999988777764 445568999999976532
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
+....|+.+|++++.+++.
T Consensus 138 -------~~~~~Y~~sK~~~e~~~~~------------------------------------------------------ 156 (242)
T 2bka_A 138 -------SSNFLYLQVKGEVEAKVEE------------------------------------------------------ 156 (242)
T ss_dssp -------TCSSHHHHHHHHHHHHHHT------------------------------------------------------
T ss_pred -------CCcchHHHHHHHHHHHHHh------------------------------------------------------
Confidence 2345799999999888753
Q ss_pred CCCCCCCce-eEEEeeCcccccCcccccCCCchhhHHHHH--H--hhhhhccChHHHHHHHHHhhcccc
Q psy13409 251 PPGANITNV-NTYAVHPGVVDTELSRHFDSIIPGTAWLYQ--R--VGGLFIKSPLQGAQTTLYCALDKK 314 (330)
Q Consensus 251 ~~~~~~~~i-~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~e~a~~~~~l~~~~~ 314 (330)
.++ ++++|+||+|.|+...... .......... + .+..++.+++|+|++++++++++.
T Consensus 157 ------~~~~~~~~vrpg~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~~~~~~~ 218 (242)
T 2bka_A 157 ------LKFDRYSVFRPGVLLCDRQESRP-GEWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPR 218 (242)
T ss_dssp ------TCCSEEEEEECCEEECTTGGGSH-HHHHHHHHHCSCCTTGGGGTEEEHHHHHHHHHHHHTSCC
T ss_pred ------cCCCCeEEEcCceecCCCCCCcH-HHHHHHHhhcccCccccCCcccCHHHHHHHHHHHHhCcc
Confidence 234 7999999999998643211 0000111110 1 112337899999999999997754
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.1e-21 Score=182.71 Aligned_cols=234 Identities=13% Similarity=0.011 Sum_probs=164.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh-hHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSL-EKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~-~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
|++|||||+|+||++++++|+++|++|++++|+. .......+.+.. ..++.++.+|+++.++++++++..
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~-------~~~~~~~~~Dl~d~~~~~~~~~~~-- 72 (347)
T 1orr_A 2 AKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSS-------LGNFEFVHGDIRNKNDVTRLITKY-- 72 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHT-------TCCCEEEECCTTCHHHHHHHHHHH--
T ss_pred cEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhcc-------CCceEEEEcCCCCHHHHHHHHhcc--
Confidence 5899999999999999999999999999999853 222223333332 346888999999999999888762
Q ss_pred cCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCc--------
Q psy13409 96 NESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMH-------- 167 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~-------- 167 (330)
++|++||+||.... ..+.++++..+++|+.++.++++++.+... .++||++||.+. ++.....
T Consensus 73 ---~~d~vih~A~~~~~--~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~---~~~iv~~SS~~v-~g~~~~~~~~e~~~~ 143 (347)
T 1orr_A 73 ---MPDSCFHLAGQVAM--TTSIDNPCMDFEINVGGTLNLLEAVRQYNS---NCNIIYSSTNKV-YGDLEQYKYNETETR 143 (347)
T ss_dssp ---CCSEEEECCCCCCH--HHHHHCHHHHHHHHHHHHHHHHHHHHHHCT---TCEEEEEEEGGG-GTTCTTSCEEECSSC
T ss_pred ---CCCEEEECCcccCh--hhhhhCHHHHHHHHHHHHHHHHHHHHHhCC---CceEEEeccHHH-hCCCCcCCccccccc
Confidence 68999999997532 223457788999999999999999877542 269999999754 3321110
Q ss_pred ------ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCc
Q psy13409 168 ------FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTN 241 (330)
Q Consensus 168 ------~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (330)
..+++...+..+...|+.+|++.+.+++.++.++
T Consensus 144 ~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---------------------------------------- 183 (347)
T 1orr_A 144 YTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARIF---------------------------------------- 183 (347)
T ss_dssp EEETTCTTCBCTTSCCCCCHHHHHHHHHHHHHHHHHHHHH----------------------------------------
T ss_pred ccccccccCccccCCCCCCCchHHHHHHHHHHHHHHHHHh----------------------------------------
Confidence 0113333345567899999999999999998763
Q ss_pred ccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHH----------Hhhh-------hhccChHHHHH
Q psy13409 242 HYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQ----------RVGG-------LFIKSPLQGAQ 304 (330)
Q Consensus 242 ~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~----------~~~~-------~~~~~~~e~a~ 304 (330)
|++++.|.||+|.++................. ++.. ..+..++|+|+
T Consensus 184 ----------------gi~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~ 247 (347)
T 1orr_A 184 ----------------GLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVLHAEDMIS 247 (347)
T ss_dssp ----------------CCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEEESSSCCEEECEEHHHHHH
T ss_pred ----------------CCcEEEEccCceeCcCCCCCCcCcHHHHHHHHHHhCcccCCCCeEEecCCcceEeeEEHHHHHH
Confidence 68999999999999865432111111111111 1111 01448999999
Q ss_pred HHHHhhccccccccCceecccC
Q psy13409 305 TTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 305 ~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
++++++..+ ...+|+.|+-.
T Consensus 248 a~~~~~~~~--~~~~g~~~~v~ 267 (347)
T 1orr_A 248 LYFTALANV--SKIRGNAFNIG 267 (347)
T ss_dssp HHHHHHHTH--HHHTTCEEEES
T ss_pred HHHHHHhcc--ccCCCCEEEeC
Confidence 999998541 24577766554
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-21 Score=186.19 Aligned_cols=215 Identities=18% Similarity=0.167 Sum_probs=161.2
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHC-CC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKR-GA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~-G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.+++|++|||||+|+||++++++|+++ |+ +|++++|+..+..+..+.+ ...++.++.+|++|.+++++++
T Consensus 18 ~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~--------~~~~v~~~~~Dl~d~~~l~~~~ 89 (344)
T 2gn4_A 18 MLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEF--------NDPRMRFFIGDVRDLERLNYAL 89 (344)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHH--------CCTTEEEEECCTTCHHHHHHHT
T ss_pred hhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHh--------cCCCEEEEECCCCCHHHHHHHH
Confidence 478999999999999999999999999 98 9999999988766655444 2357899999999998887775
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 91 QEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
+ .+|++||+||....+ .......+.+++|+.++.++++++.+. +.+++|++||..+.
T Consensus 90 ~-------~~D~Vih~Aa~~~~~--~~~~~~~~~~~~Nv~gt~~l~~aa~~~----~v~~~V~~SS~~~~---------- 146 (344)
T 2gn4_A 90 E-------GVDICIHAAALKHVP--IAEYNPLECIKTNIMGASNVINACLKN----AISQVIALSTDKAA---------- 146 (344)
T ss_dssp T-------TCSEEEECCCCCCHH--HHHHSHHHHHHHHHHHHHHHHHHHHHT----TCSEEEEECCGGGS----------
T ss_pred h-------cCCEEEECCCCCCCC--chhcCHHHHHHHHHHHHHHHHHHHHhC----CCCEEEEecCCccC----------
Confidence 4 589999999976421 122345678999999999999888763 45899999996542
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
.+...|+.||++.+.++++++.+++
T Consensus 147 -------~p~~~Y~~sK~~~E~~~~~~~~~~~------------------------------------------------ 171 (344)
T 2gn4_A 147 -------NPINLYGATKLCSDKLFVSANNFKG------------------------------------------------ 171 (344)
T ss_dssp -------SCCSHHHHHHHHHHHHHHHGGGCCC------------------------------------------------
T ss_pred -------CCccHHHHHHHHHHHHHHHHHHHhC------------------------------------------------
Confidence 2346899999999999999988776
Q ss_pred CCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHH---Hh------hhhhccChHHHHHHHHHhhccccccccCce
Q psy13409 251 PPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQ---RV------GGLFIKSPLQGAQTTLYCALDKKCERETGL 321 (330)
Q Consensus 251 ~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~---~~------~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~ 321 (330)
. .|+++++|.||.|.++...-. +........ ++ ....+.+++|+|+++++++..+. .|+
T Consensus 172 --~---~g~~~~~vRpg~v~g~~~~~i---~~~~~~~~~g~~~~~i~~~~~~r~~i~v~D~a~~v~~~l~~~~----~g~ 239 (344)
T 2gn4_A 172 --S---SQTQFSVVRYGNVVGSRGSVV---PFFKKLVQNKASEIPITDIRMTRFWITLDEGVSFVLKSLKRMH----GGE 239 (344)
T ss_dssp --S---SCCEEEEECCCEETTCTTSHH---HHHHHHHHHTCCCEEESCTTCEEEEECHHHHHHHHHHHHHHCC----SSC
T ss_pred --C---CCcEEEEEEeccEECCCCCHH---HHHHHHHHcCCCceEEeCCCeEEeeEEHHHHHHHHHHHHhhcc----CCC
Confidence 4 789999999999988742210 001111000 00 11226789999999999986532 465
Q ss_pred eccc
Q psy13409 322 YYAK 325 (330)
Q Consensus 322 ~~~~ 325 (330)
.|..
T Consensus 240 ~~~~ 243 (344)
T 2gn4_A 240 IFVP 243 (344)
T ss_dssp EEEE
T ss_pred EEec
Confidence 5543
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-21 Score=182.59 Aligned_cols=168 Identities=21% Similarity=0.166 Sum_probs=130.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
++|++|||||+|+||++++++|+++|++|++++|+.....+..+.+... .+.++.++.+|++|.++++++++.
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~d~~~~~~~~~~-- 76 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKI-----TGKTPAFHETDVSDERALARIFDA-- 76 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHH-----HSCCCEEECCCTTCHHHHHHHHHH--
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhh-----cCCCceEEEeecCCHHHHHHHHhc--
Confidence 5789999999999999999999999999999999877665555555443 245788999999999999988875
Q ss_pred hcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccc
Q psy13409 95 DNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLE 174 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~ 174 (330)
+.+|++|||||..... ...+.....+++|+.++.++++. +.+.+.++||++||... ++.. ...+++..
T Consensus 77 ---~~~d~vih~A~~~~~~--~~~~~~~~~~~~n~~~~~~l~~~----~~~~~~~~iv~~SS~~~-~g~~--~~~~~~e~ 144 (341)
T 3enk_A 77 ---HPITAAIHFAALKAVG--ESVAKPIEYYRNNLDSLLSLLRV----MRERAVKRIVFSSSATV-YGVP--ERSPIDET 144 (341)
T ss_dssp ---SCCCEEEECCCCCCHH--HHHHCHHHHHHHHHHHHHHHHHH----HHHTTCCEEEEEEEGGG-BCSC--SSSSBCTT
T ss_pred ---cCCcEEEECccccccC--ccccChHHHHHHHHHHHHHHHHH----HHhCCCCEEEEEecceE-ecCC--CCCCCCCC
Confidence 4789999999976421 12344567788999997776655 45555689999999654 4422 22344455
Q ss_pred cCCCcchhhHHhHHHHHHHHHHHHHHh
Q psy13409 175 KGYSATGAYGRSKLANILFTTELAKRL 201 (330)
Q Consensus 175 ~~~~~~~~Y~asK~a~~~~~~~la~~~ 201 (330)
.+..+...|+.+|++.+.+++.++.++
T Consensus 145 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~ 171 (341)
T 3enk_A 145 FPLSATNPYGQTKLMAEQILRDVEAAD 171 (341)
T ss_dssp SCCBCSSHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCChhHHHHHHHHHHHHHHhhcC
Confidence 556677899999999999999998874
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-21 Score=173.59 Aligned_cols=195 Identities=9% Similarity=0.023 Sum_probs=139.1
Q ss_pred CEEEEEcCCCchHHHHHHHHH-HCCCEEEEEecChh-HHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELA-KRGARVIMACRSLE-KAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~-~~G~~Vil~~R~~~-~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
|+++||||+|+||++++++|+ +.|++|++++|+.+ +++++. . ...++.++.+|++|+++++++++
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~----~------~~~~~~~~~~D~~d~~~~~~~~~--- 72 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEI----I------DHERVTVIEGSFQNPGXLEQAVT--- 72 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHH----H------TSTTEEEEECCTTCHHHHHHHHT---
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhc----c------CCCceEEEECCCCCHHHHHHHHc---
Confidence 789999999999999999999 89999999999987 554432 1 24678999999999999888775
Q ss_pred hcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccc
Q psy13409 95 DNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLE 174 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~ 174 (330)
.+|++|||+|.. |+. ++.+++.|.+.+.++||++||..+..+.+.. ....
T Consensus 73 ----~~d~vv~~ag~~-----------------n~~-----~~~~~~~~~~~~~~~iv~iSs~~~~~~~~~~----~~~~ 122 (221)
T 3r6d_A 73 ----NAEVVFVGAMES-----------------GSD-----MASIVKALSRXNIRRVIGVSMAGLSGEFPVA----LEKW 122 (221)
T ss_dssp ----TCSEEEESCCCC-----------------HHH-----HHHHHHHHHHTTCCEEEEEEETTTTSCSCHH----HHHH
T ss_pred ----CCCEEEEcCCCC-----------------Chh-----HHHHHHHHHhcCCCeEEEEeeceecCCCCcc----cccc
Confidence 479999999853 222 7888888888777899999998765542110 0000
Q ss_pred cCCCcch-hhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCC
Q psy13409 175 KGYSATG-AYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPG 253 (330)
Q Consensus 175 ~~~~~~~-~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (330)
.. .... .|+.+|.+++.+++ .
T Consensus 123 ~~-~~~~~~y~~~K~~~e~~~~---------------------------------------------------------~ 144 (221)
T 3r6d_A 123 TF-DNLPISYVQGERQARNVLR---------------------------------------------------------E 144 (221)
T ss_dssp HH-HTSCHHHHHHHHHHHHHHH---------------------------------------------------------H
T ss_pred cc-cccccHHHHHHHHHHHHHH---------------------------------------------------------h
Confidence 00 0111 79999999887664 2
Q ss_pred CCCCceeEEEeeCcccccCc-ccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhh--ccccccccCcee
Q psy13409 254 ANITNVNTYAVHPGVVDTEL-SRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCA--LDKKCERETGLY 322 (330)
Q Consensus 254 ~~~~~i~v~~v~pG~v~t~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~--~~~~~~~~~G~~ 322 (330)
.+|++++|+||++.++. .......... .+.. ....+++|+|+.+++++ +++. .++++.+
T Consensus 145 ---~~i~~~~vrpg~v~~~~~~~~~~~~~~~-----~~~~-~~~~~~~dvA~~~~~l~~~~~~~-~~~~~~~ 206 (221)
T 3r6d_A 145 ---SNLNYTILRLTWLYNDPEXTDYELIPEG-----AQFN-DAQVSREAVVKAIFDILHAADET-PFHRTSI 206 (221)
T ss_dssp ---SCSEEEEEEECEEECCTTCCCCEEECTT-----SCCC-CCEEEHHHHHHHHHHHHTCSCCG-GGTTEEE
T ss_pred ---CCCCEEEEechhhcCCCCCcceeeccCC-----ccCC-CceeeHHHHHHHHHHHHHhcChh-hhhccee
Confidence 58999999999998873 2221111000 0111 11578999999999999 7753 4655543
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-21 Score=180.91 Aligned_cols=226 Identities=16% Similarity=0.071 Sum_probs=161.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
..+.+++|||||+|+||++++++|+++|++|++++|+... +. .++.++.+|++|.++++++++.
T Consensus 9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~---------------l~~~~~~~Dl~d~~~~~~~~~~ 72 (321)
T 2pk3_A 9 HHGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEA-KL---------------PNVEMISLDIMDSQRVKKVISD 72 (321)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTC-CC---------------TTEEEEECCTTCHHHHHHHHHH
T ss_pred ccCcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcc-cc---------------ceeeEEECCCCCHHHHHHHHHh
Confidence 3567999999999999999999999999999999998653 10 1478899999999999888775
Q ss_pred HHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccc
Q psy13409 93 ILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDIN 172 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~ 172 (330)
+++|++||+||.... ..+.++++..+++|+.++.++++++ +.+ .+.++||++||.+.. +.......+++
T Consensus 73 -----~~~d~vih~A~~~~~--~~~~~~~~~~~~~Nv~g~~~l~~a~-~~~--~~~~~iv~~SS~~v~-g~~~~~~~~~~ 141 (321)
T 2pk3_A 73 -----IKPDYIFHLAAKSSV--KDSWLNKKGTFSTNVFGTLHVLDAV-RDS--NLDCRILTIGSSEEY-GMILPEESPVS 141 (321)
T ss_dssp -----HCCSEEEECCSCCCH--HHHTTCHHHHHHHHHHHHHHHHHHH-HHH--TCCCEEEEEEEGGGT-BSCCGGGCSBC
T ss_pred -----cCCCEEEEcCcccch--hhhhhcHHHHHHHHHHHHHHHHHHH-HHh--CCCCeEEEEccHHhc-CCCCCCCCCCC
Confidence 368999999997542 1234567889999999999999988 444 246899999998543 32100122344
Q ss_pred cccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCC
Q psy13409 173 LEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPP 252 (330)
Q Consensus 173 ~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (330)
+..+..+...|+.+|++.+.+++.++.+
T Consensus 142 E~~~~~~~~~Y~~sK~~~E~~~~~~~~~---------------------------------------------------- 169 (321)
T 2pk3_A 142 EENQLRPMSPYGVSKASVGMLARQYVKA---------------------------------------------------- 169 (321)
T ss_dssp TTSCCBCCSHHHHHHHHHHHHHHHHHHH----------------------------------------------------
T ss_pred CCCCCCCCCccHHHHHHHHHHHHHHHHH----------------------------------------------------
Confidence 4445566789999999999999999875
Q ss_pred CCCCCceeEEEeeCcccccCcccccCCCchhhHHHHH---H-------hh----hhhccChHHHHHHHHHhhcccccccc
Q psy13409 253 GANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQ---R-------VG----GLFIKSPLQGAQTTLYCALDKKCERE 318 (330)
Q Consensus 253 ~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~---~-------~~----~~~~~~~~e~a~~~~~l~~~~~~~~~ 318 (330)
.|++++.|.||.|.++................. . .+ ...+..++|+|+++++++..+ .
T Consensus 170 ----~gi~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~----~ 241 (321)
T 2pk3_A 170 ----YGMDIIHTRTFNHIGPGQSLGFVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIVQAYWLLSQYG----K 241 (321)
T ss_dssp ----HCCEEEEEEECEEECTTCCTTSHHHHHHHHHHHHHTTSSCSEEEESCSSCEEEEEEHHHHHHHHHHHHHHC----C
T ss_pred ----cCCCEEEEEeCcccCcCCCCCchHHHHHHHHHHHhcCCCCCeEEeCCCCcEEeeEEHHHHHHHHHHHHhCC----C
Confidence 368999999999988865431100111111111 0 00 122568999999999998654 3
Q ss_pred Cceeccc
Q psy13409 319 TGLYYAK 325 (330)
Q Consensus 319 ~G~~~~~ 325 (330)
+|..|+-
T Consensus 242 ~g~~~~i 248 (321)
T 2pk3_A 242 TGDVYNV 248 (321)
T ss_dssp TTCEEEE
T ss_pred CCCeEEe
Confidence 5666654
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.7e-22 Score=187.47 Aligned_cols=227 Identities=14% Similarity=0.071 Sum_probs=160.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
|++|++|||||+|+||++++++|+++|++|++++|+.+.... +.+.... ...++.++.+|++|.++++++++.+
T Consensus 1 m~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~--~~~~~~~----~~~~~~~~~~Dl~d~~~~~~~~~~~ 74 (345)
T 2z1m_A 1 MSGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFAS--WRLKELG----IENDVKIIHMDLLEFSNIIRTIEKV 74 (345)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTT--HHHHHTT----CTTTEEECCCCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCccccc--ccHhhcc----ccCceeEEECCCCCHHHHHHHHHhc
Confidence 468999999999999999999999999999999998754321 1122211 1346889999999999999988776
Q ss_pred HhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCCcccccc
Q psy13409 94 LDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSMHFEDIN 172 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~~~~~~~ 172 (330)
++|++|||||.... ..+.++++..+++|+.++.++++++.+. + .++||++||.+. ++... ..+++
T Consensus 75 -----~~d~vih~A~~~~~--~~~~~~~~~~~~~Nv~g~~~l~~a~~~~----~~~~~iv~~SS~~v-yg~~~--~~~~~ 140 (345)
T 2z1m_A 75 -----QPDEVYNLAAQSFV--GVSFEQPILTAEVDAIGVLRILEALRTV----KPDTKFYQASTSEM-FGKVQ--EIPQT 140 (345)
T ss_dssp -----CCSEEEECCCCCCH--HHHTTSHHHHHHHHTHHHHHHHHHHHHH----CTTCEEEEEEEGGG-GCSCS--SSSBC
T ss_pred -----CCCEEEECCCCcch--hhhhhCHHHHHHHHHHHHHHHHHHHHHh----CCCceEEEEechhh-cCCCC--CCCCC
Confidence 68999999997531 2234678889999999999999988752 3 389999999753 33211 12344
Q ss_pred cccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCC
Q psy13409 173 LEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPP 252 (330)
Q Consensus 173 ~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (330)
...+..+...|+.+|++.+.+++.++.+++.. .
T Consensus 141 e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~---~-------------------------------------------- 173 (345)
T 2z1m_A 141 EKTPFYPRSPYAVAKLFGHWITVNYREAYNMF---A-------------------------------------------- 173 (345)
T ss_dssp TTSCCCCCSHHHHHHHHHHHHHHHHHHHHCCC---E--------------------------------------------
T ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHHHhCCc---e--------------------------------------------
Confidence 44455677899999999999999999887510 0
Q ss_pred CCCCCceeEEEeeCcccccCcccccCCCchhhHHHHH------Hhh----hhhccChHHHHHHHHHhhccc
Q psy13409 253 GANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQ------RVG----GLFIKSPLQGAQTTLYCALDK 313 (330)
Q Consensus 253 ~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~------~~~----~~~~~~~~e~a~~~~~l~~~~ 313 (330)
. .++.++.+.||.+.|.+...... ....... ..+ ...+..++|+|+++++++..+
T Consensus 174 ~---~~r~~~~~gpg~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~Dva~a~~~~~~~~ 238 (345)
T 2z1m_A 174 C---SGILFNHESPLRGIEFVTRKITY---SLARIKYGLQDKLVLGNLNAKRDWGYAPEYVEAMWLMMQQP 238 (345)
T ss_dssp E---EEEECCEECTTSCTTSHHHHHHH---HHHHHHTTSCSCEEESCTTCEECCEEHHHHHHHHHHHHTSS
T ss_pred E---eeeeeeecCCCCCCcchhHHHHH---HHHHHHcCCCCeeeeCCCCceeeeEEHHHHHHHHHHHHhCC
Confidence 1 35678889999888765321100 0000000 001 112678999999999998654
|
| >4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A | Back alignment and structure |
|---|
Probab=99.87 E-value=6.1e-21 Score=182.89 Aligned_cols=224 Identities=12% Similarity=0.018 Sum_probs=172.3
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHH-HCCCEEEEEecChhH------------HHHHHHHHHHhhcccCCCCeEEEEEc
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELA-KRGARVIMACRSLEK------------AETAADDIRTSLKDVKDAGEVVIRQL 78 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~-~~G~~Vil~~R~~~~------------l~~~~~~l~~~~~~~~~~~~v~~i~~ 78 (330)
..+.+|++||||||+|||++++..|+ ..|+.|+++.+..+. .....+.+++ .+.+...+.|
T Consensus 46 ~~~~pK~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~------~G~~a~~i~~ 119 (401)
T 4ggo_A 46 GAKAPKNVLVLGCSNGYGLASRITAAFGYGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKR------EGLYSVTIDG 119 (401)
T ss_dssp TSCCCCEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHH------HTCCEEEEES
T ss_pred ccCCCCEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecCCcccccccccccchhHHHHHHHHHH------cCCCceeEeC
Confidence 35678999999999999999999999 689999999876432 2233344444 3788999999
Q ss_pred cCCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCC------------------------------------CCCChhhHH
Q psy13409 79 DLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCP------------------------------------RQLTEDGYE 122 (330)
Q Consensus 79 Dls~~~si~~l~~~i~~~~g~iDvlInnAG~~~~~------------------------------------~~~~~~~~~ 122 (330)
|+++.++++++++.+.+.+|++|+||||++..... ...+.++++
T Consensus 120 Dv~d~e~i~~vi~~i~~~~G~IDiLVhS~A~~~r~~p~~g~~~~S~LKpi~~~~~~~~ldt~~~~i~~~~l~pat~eeie 199 (401)
T 4ggo_A 120 DAFSDEIKAQVIEEAKKKGIKFDLIVYSLASPVRTDPDTGIMHKSVLKPFGKTFTGKTVDPFTGELKEISAEPANDEEAA 199 (401)
T ss_dssp CTTSHHHHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEECTTTCCEEEEEECCCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCEEEEecccccccCCCCCceeeeeecccccccccccccccccccccccccCCcHHHHH
Confidence 99999999999999999999999999999975210 012344555
Q ss_pred HhHHH---HHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHH
Q psy13409 123 LQFAT---NHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAK 199 (330)
Q Consensus 123 ~~l~v---N~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~ 199 (330)
.+..+ ..++.|...+...+.|.+ ++++|.+|+..+.... +....+.++++|++++..+++|+.
T Consensus 200 ~T~~vMg~s~~s~w~~al~~a~lla~--G~siva~SYiGse~t~------------P~Y~~G~mG~AKaaLEa~~r~La~ 265 (401)
T 4ggo_A 200 ATVKVMGGEDWERWIKQLSKEGLLEE--GCITLAYSYIGPEATQ------------ALYRKGTIGKAKEHLEATAHRLNK 265 (401)
T ss_dssp HHHHHHSSHHHHHHHHHHHHTTCEEE--EEEEEEEECCCCGGGH------------HHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHhhhcccC--CceEEEEeccCcceee------------cCCCccHHHHHHHHHHHHHHHHHH
Confidence 54444 556666666666665543 6899999997764432 002334789999999999999999
Q ss_pred HhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCC
Q psy13409 200 RLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDS 279 (330)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~ 279 (330)
+++ ++++|.++||.+.|..+...+.
T Consensus 266 eL~-------------------------------------------------------~~~a~v~v~~a~vT~AssaIP~ 290 (401)
T 4ggo_A 266 ENP-------------------------------------------------------SIRAFVSVNKGLVTRASAVIPV 290 (401)
T ss_dssp HCT-------------------------------------------------------TEEEEEEECCCCCCTTGGGSSS
T ss_pred hcC-------------------------------------------------------CCcEEEEEcCccccchhhcCCC
Confidence 986 4899999999999999999886
Q ss_pred CchhhHHHHHHhhhhhccChHHHHHHHHHhhcc
Q psy13409 280 IIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALD 312 (330)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~ 312 (330)
.+.....++.-++. .++.|.+.+.+..|..+
T Consensus 291 ~ply~~~l~kvmk~--~g~heg~ieq~~rl~~~ 321 (401)
T 4ggo_A 291 IPLYLASLFKVMKE--KGNHEGCIEQITRLYAE 321 (401)
T ss_dssp HHHHHHHHHHHHHH--HTCCCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHh--cCCCCchHHHHHHHHHH
Confidence 66656666666666 67889999999999754
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.9e-21 Score=183.25 Aligned_cols=229 Identities=14% Similarity=0.070 Sum_probs=162.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
+++|++|||||+|+||++++++|+++|++|++++|+........+.+. ...++.++.+|+++.+++.++++.+
T Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-------~~~~~~~~~~Dl~d~~~~~~~~~~~ 79 (357)
T 1rkx_A 7 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETAR-------VADGMQSEIGDIRDQNKLLESIREF 79 (357)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTT-------TTTTSEEEECCTTCHHHHHHHHHHH
T ss_pred hCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhc-------cCCceEEEEccccCHHHHHHHHHhc
Confidence 578999999999999999999999999999999998765433332221 1456889999999999999988765
Q ss_pred HhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccccc
Q psy13409 94 LDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINL 173 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~ 173 (330)
++|++||+||... ...+.++++..+++|+.++.++++++.+. ...++||++||... ++... ...+++.
T Consensus 80 -----~~d~vih~A~~~~--~~~~~~~~~~~~~~n~~~~~~l~~a~~~~---~~~~~~v~~SS~~v-yg~~~-~~~~~~E 147 (357)
T 1rkx_A 80 -----QPEIVFHMAAQPL--VRLSYSEPVETYSTNVMGTVYLLEAIRHV---GGVKAVVNITSDKC-YDNKE-WIWGYRE 147 (357)
T ss_dssp -----CCSEEEECCSCCC--HHHHHHCHHHHHHHHTHHHHHHHHHHHHH---CCCCEEEEECCGGG-BCCCC-SSSCBCT
T ss_pred -----CCCEEEECCCCcc--cccchhCHHHHHHHHHHHHHHHHHHHHHh---CCCCeEEEecCHHH-hCCCC-cCCCCCC
Confidence 6899999999632 12345667889999999999999988653 22579999999764 33211 1112333
Q ss_pred ccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCC
Q psy13409 174 EKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPG 253 (330)
Q Consensus 174 ~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (330)
..+..+...|+.+|++.+.+++.++.++... .+.. .
T Consensus 148 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~--------------~~~~------------------------------~ 183 (357)
T 1rkx_A 148 NEAMGGYDPYSNSKGCAELVTSSYRNSFFNP--------------ANYG------------------------------Q 183 (357)
T ss_dssp TSCBCCSSHHHHHHHHHHHHHHHHHHHHSCG--------------GGHH------------------------------H
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHHhhh--------------hccc------------------------------c
Confidence 3344567789999999999999999887200 0000 1
Q ss_pred CCCCceeEEEeeCcccccCcccccCCCchhhHHHHHH--------h----hhhhccChHHHHHHHHHhhc
Q psy13409 254 ANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQR--------V----GGLFIKSPLQGAQTTLYCAL 311 (330)
Q Consensus 254 ~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~--------~----~~~~~~~~~e~a~~~~~l~~ 311 (330)
.|++++.|.||.|.++...... .....+... + ....+..++|+|++++.++.
T Consensus 184 ---~gi~~~~lrp~~v~G~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~v~v~Dva~a~~~~~~ 247 (357)
T 1rkx_A 184 ---HGTAVATVRAGNVIGGGDWALD---RIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPLSGYLLLAQ 247 (357)
T ss_dssp ---HCCEEEEEECCCEECTTCCCSS---CHHHHHHHHHHTTCCEECSCTTCEECCEETHHHHHHHHHHHH
T ss_pred ---CCceEEEEeeceeeCCCCCccc---cHHHHHHHHHhcCCCEEECCCCCeeccEeHHHHHHHHHHHHH
Confidence 4899999999999987532111 111111110 0 11125678999999999885
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.6e-21 Score=179.38 Aligned_cols=230 Identities=13% Similarity=0.059 Sum_probs=160.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCC--CEEEEEecChh--HHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRG--ARVIMACRSLE--KAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G--~~Vil~~R~~~--~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
+++++|||||+|+||++++++|+++| ++|++++|+.. ..+.+ +. +....++.++.+|++|.+++++++
T Consensus 2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~-~~-------~~~~~~~~~~~~Dl~d~~~~~~~~ 73 (336)
T 2hun_A 2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANL-KD-------LEDDPRYTFVKGDVADYELVKELV 73 (336)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGG-TT-------TTTCTTEEEEECCTTCHHHHHHHH
T ss_pred CCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHH-hh-------hccCCceEEEEcCCCCHHHHHHHh
Confidence 45789999999999999999999997 89999998642 11111 11 112457889999999999888877
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 91 QEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
+.+|++||+||.... ..+.++++..+++|+.++.++++++.+. ...++||++||... ++... ..+
T Consensus 74 -------~~~d~vih~A~~~~~--~~~~~~~~~~~~~Nv~g~~~l~~a~~~~---~~~~~iv~~SS~~v-yg~~~--~~~ 138 (336)
T 2hun_A 74 -------RKVDGVVHLAAESHV--DRSISSPEIFLHSNVIGTYTLLESIRRE---NPEVRFVHVSTDEV-YGDIL--KGS 138 (336)
T ss_dssp -------HTCSEEEECCCCCCH--HHHHHCTHHHHHHHHHHHHHHHHHHHHH---CTTSEEEEEEEGGG-GCCCS--SSC
T ss_pred -------hCCCEEEECCCCcCh--hhhhhCHHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEeccHHH-HCCCC--CCC
Confidence 258999999997531 2234567788999999999999998775 12379999999753 33211 123
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
+++..+..+...|+.+|++.+.++++++.+
T Consensus 139 ~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~-------------------------------------------------- 168 (336)
T 2hun_A 139 FTENDRLMPSSPYSATKAASDMLVLGWTRT-------------------------------------------------- 168 (336)
T ss_dssp BCTTBCCCCCSHHHHHHHHHHHHHHHHHHH--------------------------------------------------
T ss_pred cCCCCCCCCCCccHHHHHHHHHHHHHHHHH--------------------------------------------------
Confidence 444445567789999999999999998875
Q ss_pred CCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHH--Hh-------hhhhccChHHHHHHHHHhhccccccccCce
Q psy13409 251 PPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQ--RV-------GGLFIKSPLQGAQTTLYCALDKKCERETGL 321 (330)
Q Consensus 251 ~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~--~~-------~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~ 321 (330)
.|++++.|.||.|.++................. .+ ....+..++|+|+++++++..+ .+|+
T Consensus 169 ------~~~~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~----~~g~ 238 (336)
T 2hun_A 169 ------YNLNASITRCTNNYGPYQFPEKLIPKTIIRASLGLKIPIYGTGKNVRDWLYVEDHVRAIELVLLKG----ESRE 238 (336)
T ss_dssp ------TTCEEEEEEECEEESTTCCTTSHHHHHHHHHHTTCCEEEETC---CEEEEEHHHHHHHHHHHHHHC----CTTC
T ss_pred ------hCCCEEEEeeeeeeCcCCCcCchHHHHHHHHHcCCCceEeCCCCceeeeEEHHHHHHHHHHHHhCC----CCCC
Confidence 368999999999998864321000011111110 00 0122567999999999998543 2676
Q ss_pred ecccCC
Q psy13409 322 YYAKAD 327 (330)
Q Consensus 322 ~~~~~~ 327 (330)
.|+-..
T Consensus 239 ~~~v~~ 244 (336)
T 2hun_A 239 IYNISA 244 (336)
T ss_dssp EEEECC
T ss_pred EEEeCC
Confidence 665443
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.9e-21 Score=182.24 Aligned_cols=234 Identities=13% Similarity=0.074 Sum_probs=163.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHC-CCEEEEEecChh--HHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 18 TAIVTGSNTGIGKCTANELAKR-GARVIMACRSLE--KAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~-G~~Vil~~R~~~--~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
++|||||+|+||++++++|+++ |++|++++|+.. ..+.+ +.+ ....++.++.+|+++.+++++++++.
T Consensus 2 kvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~-~~~-------~~~~~~~~~~~Dl~d~~~~~~~~~~~- 72 (361)
T 1kew_A 2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESL-SDI-------SESNRYNFEHADICDSAEITRIFEQY- 72 (361)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGG-TTT-------TTCTTEEEEECCTTCHHHHHHHHHHH-
T ss_pred EEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCchhhh-hhh-------hcCCCeEEEECCCCCHHHHHHHHhhc-
Confidence 6999999999999999999998 799999998642 11111 111 12457889999999999999888753
Q ss_pred hcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhh-----CCCeEEEEcCCCcccCCCCC---
Q psy13409 95 DNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKS-----APARIINLSSLAHTWGDGSM--- 166 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~-----~~g~IV~iSS~~~~~~~~~~--- 166 (330)
.+|+||||||.... +.+.++++..+++|+.++.++++++.+.|... ++++||++||.+. ++....
T Consensus 73 ----~~d~vih~A~~~~~--~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v-~g~~~~~~~ 145 (361)
T 1kew_A 73 ----QPDAVMHLAAESHV--DRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEV-YGDLPHPDE 145 (361)
T ss_dssp ----CCSEEEECCSCCCH--HHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGG-GCCCCCGGG
T ss_pred ----CCCEEEECCCCcCh--hhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHH-hCCCccccc
Confidence 68999999997531 22345678899999999999999999886431 1369999999653 332110
Q ss_pred -----cccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCc
Q psy13409 167 -----HFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTN 241 (330)
Q Consensus 167 -----~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (330)
...++++..+..+...|+.+|++.+.+++.++.++
T Consensus 146 ~~~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---------------------------------------- 185 (361)
T 1kew_A 146 VENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTY---------------------------------------- 185 (361)
T ss_dssp SCTTSCCCCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----------------------------------------
T ss_pred ccccccCCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHh----------------------------------------
Confidence 01134444455677899999999999999998763
Q ss_pred ccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHH--Hh---h----hhhccChHHHHHHHHHhhcc
Q psy13409 242 HYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQ--RV---G----GLFIKSPLQGAQTTLYCALD 312 (330)
Q Consensus 242 ~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~--~~---~----~~~~~~~~e~a~~~~~l~~~ 312 (330)
|++++.|.||.|.++................. ++ + ...+..++|+|+++++++..
T Consensus 186 ----------------gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~ 249 (361)
T 1kew_A 186 ----------------GLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHARALHMVVTE 249 (361)
T ss_dssp ----------------CCCEEEEEECEEESTTCCTTSHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHH
T ss_pred ----------------CCcEEEEeeceeECCCCCcccHHHHHHHHHHcCCCceEcCCCceeEeeEEHHHHHHHHHHHHhC
Confidence 58899999999999875321100111111111 00 0 11256799999999999854
Q ss_pred ccccccCceecccCC
Q psy13409 313 KKCERETGLYYAKAD 327 (330)
Q Consensus 313 ~~~~~~~G~~~~~~~ 327 (330)
+ .+|+.|+-..
T Consensus 250 ~----~~g~~~~v~~ 260 (361)
T 1kew_A 250 G----KAGETYNIGG 260 (361)
T ss_dssp C----CTTCEEEECC
T ss_pred C----CCCCEEEecC
Confidence 3 3676665543
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.8e-21 Score=172.59 Aligned_cols=214 Identities=13% Similarity=0.026 Sum_probs=147.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHC--CCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKR--GARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~--G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
+++|+++||||+|+||++++++|+++ |++|++++|+.+++++. ..++.++.+|+++.++++++++
T Consensus 2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~-------------~~~~~~~~~D~~d~~~~~~~~~ 68 (253)
T 1xq6_A 2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI-------------GGEADVFIGDITDADSINPAFQ 68 (253)
T ss_dssp CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHT-------------TCCTTEEECCTTSHHHHHHHHT
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhc-------------CCCeeEEEecCCCHHHHHHHHc
Confidence 46789999999999999999999999 89999999997654321 2356788999999998888764
Q ss_pred HHHhcCCCeeEEEEcCCCCCCC-----------CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcc
Q psy13409 92 EILDNESAIHLLINNAGVMMCP-----------RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHT 160 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~-----------~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~ 160 (330)
.+|++|||||..... .+...+.++..+++|+.++..+++.+.+ .+.++||++||..+.
T Consensus 69 -------~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~iv~~SS~~~~ 137 (253)
T 1xq6_A 69 -------GIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKV----AGVKHIVVVGSMGGT 137 (253)
T ss_dssp -------TCSEEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHH----HTCSEEEEEEETTTT
T ss_pred -------CCCEEEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHH----cCCCEEEEEcCccCC
Confidence 479999999976321 1222344456789999998887776643 456899999998754
Q ss_pred cCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCC
Q psy13409 161 WGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPT 240 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (330)
... ....+ .....|+.+|++++.+++
T Consensus 138 ~~~--------~~~~~-~~~~~y~~sK~~~e~~~~--------------------------------------------- 163 (253)
T 1xq6_A 138 NPD--------HPLNK-LGNGNILVWKRKAEQYLA--------------------------------------------- 163 (253)
T ss_dssp CTT--------CGGGG-GGGCCHHHHHHHHHHHHH---------------------------------------------
T ss_pred CCC--------Ccccc-ccchhHHHHHHHHHHHHH---------------------------------------------
Confidence 321 00011 112357789999887653
Q ss_pred cccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCc
Q psy13409 241 NHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETG 320 (330)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G 320 (330)
. .|+++++|+||++.++............... .-+...+.+++|+|+++++++..+. .+|
T Consensus 164 ------------~---~~i~~~~vrpg~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dva~~~~~~~~~~~---~~g 223 (253)
T 1xq6_A 164 ------------D---SGTPYTIIRAGGLLDKEGGVRELLVGKDDEL--LQTDTKTVPRADVAEVCIQALLFEE---AKN 223 (253)
T ss_dssp ------------T---SSSCEEEEEECEEECSCSSSSCEEEESTTGG--GGSSCCEEEHHHHHHHHHHHTTCGG---GTT
T ss_pred ------------h---CCCceEEEecceeecCCcchhhhhccCCcCC--cCCCCcEEcHHHHHHHHHHHHcCcc---ccC
Confidence 2 5899999999999988643211000000000 0112236799999999999986643 356
Q ss_pred eeccc
Q psy13409 321 LYYAK 325 (330)
Q Consensus 321 ~~~~~ 325 (330)
+.|+-
T Consensus 224 ~~~~i 228 (253)
T 1xq6_A 224 KAFDL 228 (253)
T ss_dssp EEEEE
T ss_pred CEEEe
Confidence 65543
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.2e-20 Score=175.87 Aligned_cols=235 Identities=14% Similarity=0.030 Sum_probs=163.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChh----HHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLE----KAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRK 88 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~----~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~ 88 (330)
+++++++|||||+|+||++++++|+++|++|++++|+.. .+.++.+.+... ...++.++.+|+++.+++++
T Consensus 24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~d~~~~~~ 98 (352)
T 1sb8_A 24 PAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEK-----QWSNFKFIQGDIRNLDDCNN 98 (352)
T ss_dssp HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHH-----HHTTEEEEECCTTSHHHHHH
T ss_pred CccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccc-----cCCceEEEECCCCCHHHHHH
Confidence 467899999999999999999999999999999999753 233222221110 02468899999999988877
Q ss_pred HHHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 89 CAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 89 l~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
+++ .+|++||+||..... .+.++++..+++|+.++.++++++.+ .+.+++|++||.....+.. .
T Consensus 99 ~~~-------~~d~vih~A~~~~~~--~~~~~~~~~~~~n~~~~~~l~~a~~~----~~~~~~v~~SS~~~~~~~~---~ 162 (352)
T 1sb8_A 99 ACA-------GVDYVLHQAALGSVP--RSINDPITSNATNIDGFLNMLIAARD----AKVQSFTYAASSSTYGDHP---G 162 (352)
T ss_dssp HHT-------TCSEEEECCSCCCHH--HHHHCHHHHHHHHTHHHHHHHHHHHH----TTCSEEEEEEEGGGGTTCC---C
T ss_pred Hhc-------CCCEEEECCcccCch--hhhhCHHHHHHHHHHHHHHHHHHHHH----cCCCEEEEeccHHhcCCCC---C
Confidence 765 589999999975321 23456788899999999998888754 3457999999976543321 1
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
.++++..+..+...|+.+|++.+.+++.++.++
T Consensus 163 ~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----------------------------------------------- 195 (352)
T 1sb8_A 163 LPKVEDTIGKPLSPYAVTKYVNELYADVFSRCY----------------------------------------------- 195 (352)
T ss_dssp SSBCTTCCCCCCSHHHHHHHHHHHHHHHHHHHH-----------------------------------------------
T ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHc-----------------------------------------------
Confidence 234444444567799999999999999998763
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCch----hhHHHHH--Hh---h----hhhccChHHHHHHHHHhhccccc
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIP----GTAWLYQ--RV---G----GLFIKSPLQGAQTTLYCALDKKC 315 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~----~~~~~~~--~~---~----~~~~~~~~e~a~~~~~l~~~~~~ 315 (330)
|++++.|.||.|.++.......... ....... ++ + ...+..++|+|+++++++...
T Consensus 196 ---------g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~-- 264 (352)
T 1sb8_A 196 ---------GFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLAATAG-- 264 (352)
T ss_dssp ---------CCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHHHHHHTCC--
T ss_pred ---------CCCEEEEEECceeCcCCCCCcchhhHHHHHHHHHHCCCCcEEeCCCCceEeeEEHHHHHHHHHHHHhcc--
Confidence 5889999999998886532210001 1111111 00 1 112567999999999988652
Q ss_pred cccCceecccC
Q psy13409 316 ERETGLYYAKA 326 (330)
Q Consensus 316 ~~~~G~~~~~~ 326 (330)
....|..|+-.
T Consensus 265 ~~~~~~~~ni~ 275 (352)
T 1sb8_A 265 LDARNQVYNIA 275 (352)
T ss_dssp GGGCSEEEEES
T ss_pred ccCCCceEEeC
Confidence 12356666543
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.6e-21 Score=168.84 Aligned_cols=215 Identities=13% Similarity=0.016 Sum_probs=143.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
+++|||||+|+||++++++|+++|++|++++|+.+++.+. ...++.++.+|++|.++ ..
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~------------~~~~~~~~~~D~~d~~~--~~------- 59 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADR------------LGATVATLVKEPLVLTE--AD------- 59 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH------------TCTTSEEEECCGGGCCH--HH-------
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccc------------cCCCceEEecccccccH--hh-------
Confidence 3699999999999999999999999999999998765432 13568899999999887 11
Q ss_pred CCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccccC
Q psy13409 97 ESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKG 176 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~ 176 (330)
+..+|++|||||...... ...+|+.+ ++.+++.+.+.+ +++|++||.++..+.+.....+.+....
T Consensus 60 ~~~~d~vi~~ag~~~~~~---------~~~~n~~~----~~~l~~a~~~~~-~~~v~~SS~~~~~~~~~~~~~~~~~~~~ 125 (224)
T 3h2s_A 60 LDSVDAVVDALSVPWGSG---------RGYLHLDF----ATHLVSLLRNSD-TLAVFILGSASLAMPGADHPMILDFPES 125 (224)
T ss_dssp HTTCSEEEECCCCCTTSS---------CTHHHHHH----HHHHHHTCTTCC-CEEEEECCGGGSBCTTCSSCGGGGCCGG
T ss_pred cccCCEEEECCccCCCcc---------hhhHHHHH----HHHHHHHHHHcC-CcEEEEecceeeccCCCCccccccCCCC
Confidence 246899999999862111 13457777 556666666666 9999999987766543322222222222
Q ss_pred CCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCCCCC
Q psy13409 177 YSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGANI 256 (330)
Q Consensus 177 ~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (330)
+.+...|+.+|++.+.+ . .... .
T Consensus 126 ~~~~~~y~~sK~~~e~~-~---~~~~--------------------------------------------------~--- 148 (224)
T 3h2s_A 126 AASQPWYDGALYQYYEY-Q---FLQM--------------------------------------------------N--- 148 (224)
T ss_dssp GGGSTTHHHHHHHHHHH-H---HHTT--------------------------------------------------C---
T ss_pred CccchhhHHHHHHHHHH-H---HHHh--------------------------------------------------c---
Confidence 22367899999998844 1 1122 3
Q ss_pred CceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCCC
Q psy13409 257 TNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKADL 328 (330)
Q Consensus 257 ~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~~ 328 (330)
.+++++.|.||++.++..... ...........-....+.+++|+|++++.++..+. ..|+.|.-.+.
T Consensus 149 ~~i~~~ivrp~~v~g~~~~~~--~~~~~~~~~~~~~~~~~i~~~DvA~~~~~~l~~~~---~~g~~~~~~~~ 215 (224)
T 3h2s_A 149 ANVNWIGISPSEAFPSGPATS--YVAGKDTLLVGEDGQSHITTGNMALAILDQLEHPT---AIRDRIVVRDA 215 (224)
T ss_dssp TTSCEEEEEECSBCCCCCCCC--EEEESSBCCCCTTSCCBCCHHHHHHHHHHHHHSCC---CTTSEEEEEEC
T ss_pred CCCcEEEEcCccccCCCcccC--ceecccccccCCCCCceEeHHHHHHHHHHHhcCcc---ccCCEEEEecC
Confidence 689999999999988722111 00000000001111236899999999999997754 35777665443
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.7e-21 Score=182.41 Aligned_cols=170 Identities=20% Similarity=0.170 Sum_probs=123.3
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHH--CCCEEEEEecChhHHHHHHHHHHHhhc--ccCCCCeEEEEEccCCCHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAK--RGARVIMACRSLEKAETAADDIRTSLK--DVKDAGEVVIRQLDLSSLKSV 86 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~--~G~~Vil~~R~~~~l~~~~~~l~~~~~--~~~~~~~v~~i~~Dls~~~si 86 (330)
++++++|+||||||+|+||++++++|++ .|++|++++|+........+.. +... ....+.++.++.+|+++.+++
T Consensus 5 ~~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~d~~~~ 83 (362)
T 3sxp_A 5 DDELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRP-SSLGHFKNLIGFKGEVIAADINNPLDL 83 (362)
T ss_dssp SCCCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------C-CCCCCGGGGTTCCSEEEECCTTCHHHH
T ss_pred chhcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccch-hhhhhhhhccccCceEEECCCCCHHHH
Confidence 4578999999999999999999999999 9999999999764211000000 0000 001245678999999999988
Q ss_pred HHHHHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCC
Q psy13409 87 RKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSM 166 (330)
Q Consensus 87 ~~l~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~ 166 (330)
+.+ ....+|+|||+||.... +.++++..+++|+.++.++++++.. . +++||++||. +.++....
T Consensus 84 ~~~------~~~~~D~vih~A~~~~~----~~~~~~~~~~~Nv~gt~~ll~aa~~----~-~~~~V~~SS~-~vyg~~~~ 147 (362)
T 3sxp_A 84 RRL------EKLHFDYLFHQAAVSDT----TMLNQELVMKTNYQAFLNLLEIARS----K-KAKVIYASSA-GVYGNTKA 147 (362)
T ss_dssp HHH------TTSCCSEEEECCCCCGG----GCCCHHHHHHHHTHHHHHHHHHHHH----T-TCEEEEEEEG-GGGCSCCS
T ss_pred HHh------hccCCCEEEECCccCCc----cccCHHHHHHHHHHHHHHHHHHHHH----c-CCcEEEeCcH-HHhCCCCC
Confidence 776 23579999999996532 4577889999999999998887732 3 3569999994 44553221
Q ss_pred cccccccccCCCcchhhHHhHHHHHHHHHHHHHH
Q psy13409 167 HFEDINLEKGYSATGAYGRSKLANILFTTELAKR 200 (330)
Q Consensus 167 ~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~ 200 (330)
++++..+..+...|+.+|++.+.+++.++.+
T Consensus 148 ---~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~ 178 (362)
T 3sxp_A 148 ---PNVVGKNESPENVYGFSKLCMDEFVLSHSND 178 (362)
T ss_dssp ---SBCTTSCCCCSSHHHHHHHHHHHHHHHTTTT
T ss_pred ---CCCCCCCCCCCChhHHHHHHHHHHHHHHhcc
Confidence 4555556677788999999999998877643
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-20 Score=175.92 Aligned_cols=231 Identities=15% Similarity=0.042 Sum_probs=152.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
+++|++|||||+|+||++++++|+++|++|+++.|+.+...+... +... . ....++.++.+|++|.++++++++
T Consensus 3 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~-~~~~-~--~~~~~~~~~~~Dl~d~~~~~~~~~-- 76 (337)
T 2c29_D 3 SQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKH-LLDL-P--KAETHLTLWKADLADEGSFDEAIK-- 76 (337)
T ss_dssp ---CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHH-HHTS-T--THHHHEEEEECCTTSTTTTHHHHT--
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHHH-HHhc-c--cCCCeEEEEEcCCCCHHHHHHHHc--
Confidence 478999999999999999999999999999999998764433221 1110 0 001357889999999988877764
Q ss_pred HhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccccc
Q psy13409 94 LDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINL 173 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~ 173 (330)
.+|++||+|+... . ...+..+..+++|+.++.++++++.+.. ..++||++||.++.++.+... .+++.
T Consensus 77 -----~~d~Vih~A~~~~-~--~~~~~~~~~~~~nv~gt~~ll~a~~~~~---~~~riV~~SS~~~~~~~~~~~-~~~~E 144 (337)
T 2c29_D 77 -----GCTGVFHVATPMD-F--ESKDPENEVIKPTIEGMLGIMKSCAAAK---TVRRLVFTSSAGTVNIQEHQL-PVYDE 144 (337)
T ss_dssp -----TCSEEEECCCCCC-S--SCSSHHHHTHHHHHHHHHHHHHHHHHHS---CCCEEEEECCGGGTSCSSSCC-SEECT
T ss_pred -----CCCEEEEeccccC-C--CCCChHHHHHHHHHHHHHHHHHHHHhCC---CccEEEEeeeHhhcccCCCCC-cccCc
Confidence 4699999998652 1 1223345688999999999988876532 147999999987665532110 01111
Q ss_pred ccC---------CCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccc
Q psy13409 174 EKG---------YSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYC 244 (330)
Q Consensus 174 ~~~---------~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
... .+....|+.||++.+.+++.++.+
T Consensus 145 ~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-------------------------------------------- 180 (337)
T 2c29_D 145 SCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKE-------------------------------------------- 180 (337)
T ss_dssp TCCCCHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHH--------------------------------------------
T ss_pred ccCCchhhhcccCCccchHHHHHHHHHHHHHHHHHH--------------------------------------------
Confidence 110 012347999999999888777643
Q ss_pred cccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHH----------HHHhhhhhccChHHHHHHHHHhhcccc
Q psy13409 245 KNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWL----------YQRVGGLFIKSPLQGAQTTLYCALDKK 314 (330)
Q Consensus 245 ~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~e~a~~~~~l~~~~~ 314 (330)
.|+++++|.||.|.++....... ...... .......++..++|+|+++++++..+
T Consensus 181 ------------~gi~~~~lrp~~v~Gp~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~- 245 (337)
T 2c29_D 181 ------------NNIDFITIIPTLVVGPFIMSSMP--PSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAHIYLFENP- 245 (337)
T ss_dssp ------------HTCCEEEEEECEEESCCSCSSCC--HHHHHHTHHHHTCGGGHHHHTEEEEEEHHHHHHHHHHHHHCT-
T ss_pred ------------cCCcEEEEeCCceECCCCCCCCC--chHHHHHHHHcCCCccccccCCCCEEEHHHHHHHHHHHhcCc-
Confidence 47999999999999986432211 110000 00111122789999999999998653
Q ss_pred ccccCceec
Q psy13409 315 CERETGLYY 323 (330)
Q Consensus 315 ~~~~~G~~~ 323 (330)
..+|.|+
T Consensus 246 --~~~~~~~ 252 (337)
T 2c29_D 246 --KAEGRYI 252 (337)
T ss_dssp --TCCEEEE
T ss_pred --ccCceEE
Confidence 2356554
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.6e-21 Score=170.36 Aligned_cols=216 Identities=14% Similarity=0.068 Sum_probs=152.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
+++|||||+|+||++++++|+++|++|++++|+.+++.. ...++.++.+|++|.++++++++
T Consensus 5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-------------~~~~~~~~~~Dl~d~~~~~~~~~----- 66 (227)
T 3dhn_A 5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKI-------------ENEHLKVKKADVSSLDEVCEVCK----- 66 (227)
T ss_dssp CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCC-------------CCTTEEEECCCTTCHHHHHHHHT-----
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchh-------------ccCceEEEEecCCCHHHHHHHhc-----
Confidence 789999999999999999999999999999999765321 13678999999999999888775
Q ss_pred CCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccccC
Q psy13409 97 ESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKG 176 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~ 176 (330)
.+|++||+||..... ...+++|+.+..++++++ .+.+.+++|++||.....+.++.. ....+
T Consensus 67 --~~d~vi~~a~~~~~~--------~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~Ss~~~~~~~~~~~----~~~~~ 128 (227)
T 3dhn_A 67 --GADAVISAFNPGWNN--------PDIYDETIKVYLTIIDGV----KKAGVNRFLMVGGAGSLFIAPGLR----LMDSG 128 (227)
T ss_dssp --TCSEEEECCCC--------------CCSHHHHHHHHHHHHH----HHTTCSEEEEECCSTTSEEETTEE----GGGTT
T ss_pred --CCCEEEEeCcCCCCC--------hhHHHHHHHHHHHHHHHH----HHhCCCEEEEeCChhhccCCCCCc----cccCC
Confidence 479999999865211 126788999977776665 344557999999987665432221 12334
Q ss_pred CCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCCCCC
Q psy13409 177 YSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGANI 256 (330)
Q Consensus 177 ~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (330)
..+...|+.+|++.+.+++.+++ .
T Consensus 129 ~~p~~~Y~~sK~~~e~~~~~~~~-----------------------------------------------------~--- 152 (227)
T 3dhn_A 129 EVPENILPGVKALGEFYLNFLMK-----------------------------------------------------E--- 152 (227)
T ss_dssp CSCGGGHHHHHHHHHHHHHTGGG-----------------------------------------------------C---
T ss_pred cchHHHHHHHHHHHHHHHHHHhh-----------------------------------------------------c---
Confidence 45677899999999988877654 2
Q ss_pred CceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCCC
Q psy13409 257 TNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKADL 328 (330)
Q Consensus 257 ~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~~ 328 (330)
.+++++.|.||+|.++............. ....-....+.+++|+|++++.++.++. ..|+.|.-.++
T Consensus 153 ~~~~~~ilrp~~v~g~~~~~~~~~~~~~~-~~~~~~~~~~i~~~Dva~ai~~~l~~~~---~~g~~~~~~~~ 220 (227)
T 3dhn_A 153 KEIDWVFFSPAADMRPGVRTGRYRLGKDD-MIVDIVGNSHISVEDYAAAMIDELEHPK---HHQERFTIGYL 220 (227)
T ss_dssp CSSEEEEEECCSEEESCCCCCCCEEESSB-CCCCTTSCCEEEHHHHHHHHHHHHHSCC---CCSEEEEEECC
T ss_pred cCccEEEEeCCcccCCCccccceeecCCC-cccCCCCCcEEeHHHHHHHHHHHHhCcc---ccCcEEEEEee
Confidence 68999999999997764321110000000 0000011236789999999999997764 47887776665
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-21 Score=183.14 Aligned_cols=160 Identities=13% Similarity=0.117 Sum_probs=120.0
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
..++++|++|||||+|+||++++++|+++|++|++++|+.....+.. . .-.++.++.+|++|.+++++++
T Consensus 15 ~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-------~---~l~~v~~~~~Dl~d~~~~~~~~ 84 (330)
T 2pzm_A 15 VPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVL-------P---PVAGLSVIEGSVTDAGLLERAF 84 (330)
T ss_dssp CSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGS-------C---SCTTEEEEECCTTCHHHHHHHH
T ss_pred cccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhh-------h---ccCCceEEEeeCCCHHHHHHHH
Confidence 34689999999999999999999999999999999999754321110 0 1146889999999999999888
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 91 QEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
+++ .+|++|||||..... +.++++ +++|+.++.++++++.+ .+.++||++||.+. ++.......+
T Consensus 85 ~~~-----~~D~vih~A~~~~~~---~~~~~~--~~~N~~~~~~l~~a~~~----~~~~~iV~~SS~~~-~~~~~~~~~~ 149 (330)
T 2pzm_A 85 DSF-----KPTHVVHSAAAYKDP---DDWAED--AATNVQGSINVAKAASK----AGVKRLLNFQTALC-YGRPATVPIP 149 (330)
T ss_dssp HHH-----CCSEEEECCCCCSCT---TCHHHH--HHHHTHHHHHHHHHHHH----HTCSEEEEEEEGGG-GCSCSSSSBC
T ss_pred hhc-----CCCEEEECCccCCCc---cccChh--HHHHHHHHHHHHHHHHH----cCCCEEEEecCHHH-hCCCccCCCC
Confidence 765 689999999976432 445555 89999999999988864 34689999999865 3321100002
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHH
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTEL 197 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~l 197 (330)
+++.. .+...|+.+|++++.+++.+
T Consensus 150 ~~E~~--~~~~~Y~~sK~~~e~~~~~~ 174 (330)
T 2pzm_A 150 IDSPT--APFTSYGISKTAGEAFLMMS 174 (330)
T ss_dssp TTCCC--CCCSHHHHHHHHHHHHHHTC
T ss_pred cCCCC--CCCChHHHHHHHHHHHHHHc
Confidence 22221 35678999999999998876
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.84 E-value=8e-21 Score=170.79 Aligned_cols=204 Identities=13% Similarity=0.063 Sum_probs=132.2
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCC-CEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRG-ARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G-~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
..+..|++|||||+|+||++++++|+++| ++|++++|+.+++.+. ...++.++.+|++|++++++++
T Consensus 19 ~~~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~------------~~~~~~~~~~Dl~d~~~~~~~~ 86 (236)
T 3qvo_A 19 FQGHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKP------------YPTNSQIIMGDVLNHAALKQAM 86 (236)
T ss_dssp ---CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSS------------CCTTEEEEECCTTCHHHHHHHH
T ss_pred ecCcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhccc------------ccCCcEEEEecCCCHHHHHHHh
Confidence 34556899999999999999999999999 8999999998654321 2457889999999999988887
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 91 QEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
+ .+|++|||+|... +. ..++.+++.|.+.+.++||++||.....+.++. +.+
T Consensus 87 ~-------~~D~vv~~a~~~~---------~~-----------~~~~~~~~~~~~~~~~~iV~iSS~~~~~~~~~~-~~~ 138 (236)
T 3qvo_A 87 Q-------GQDIVYANLTGED---------LD-----------IQANSVIAAMKACDVKRLIFVLSLGIYDEVPGK-FVE 138 (236)
T ss_dssp T-------TCSEEEEECCSTT---------HH-----------HHHHHHHHHHHHTTCCEEEEECCCCC-----------
T ss_pred c-------CCCEEEEcCCCCc---------hh-----------HHHHHHHHHHHHcCCCEEEEEecceecCCCCcc-ccc
Confidence 5 4699999998521 11 235678888888778899999998764432110 001
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
............|..+|.. +.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~-----------l~------------------------------------------------ 159 (236)
T 3qvo_A 139 WNNAVIGEPLKPFRRAADA-----------IE------------------------------------------------ 159 (236)
T ss_dssp ------CGGGHHHHHHHHH-----------HH------------------------------------------------
T ss_pred chhhcccchHHHHHHHHHH-----------HH------------------------------------------------
Confidence 1111111122334333322 22
Q ss_pred CCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 251 PPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 251 ~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
. .||++++|+||++.|+............ ...++ +.+++|+|++++++++++. +++ |+.|.-.+
T Consensus 160 --~---~gi~~~~vrPg~i~~~~~~~~~~~~~~~----~~~~~--~i~~~DvA~~i~~ll~~~~-~~~-g~~~~i~~ 223 (236)
T 3qvo_A 160 --A---SGLEYTILRPAWLTDEDIIDYELTSRNE----PFKGT--IVSRKSVAALITDIIDKPE-KHI-GENIGINQ 223 (236)
T ss_dssp --T---SCSEEEEEEECEEECCSCCCCEEECTTS----CCSCS--EEEHHHHHHHHHHHHHSTT-TTT-TEEEEEEC
T ss_pred --H---CCCCEEEEeCCcccCCCCcceEEeccCC----CCCCc--EECHHHHHHHHHHHHcCcc-ccc-CeeEEecC
Confidence 3 7999999999999887543321111100 01122 6899999999999997754 344 66665443
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=8.5e-21 Score=176.37 Aligned_cols=223 Identities=17% Similarity=0.087 Sum_probs=157.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
|++|||||+|+||++++++|+++|++|++++|+.+...+. ....+.++.+|+++.+ +.+++
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~------------~~~~~~~~~~Dl~d~~-~~~~~------ 61 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREF------------VNPSAELHVRDLKDYS-WGAGI------ 61 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGGG------------SCTTSEEECCCTTSTT-TTTTC------
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchhh------------cCCCceEEECccccHH-HHhhc------
Confidence 5799999999999999999999999999999986542211 1456788999999976 54433
Q ss_pred CCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccccC
Q psy13409 97 ESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKG 176 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~ 176 (330)
.. |++||+||... ...+.++++..+++|+.++.++++++.. .+.++||++||... ++.. ...+++...+
T Consensus 62 -~~-d~vih~A~~~~--~~~~~~~~~~~~~~n~~~~~~l~~a~~~----~~~~~iv~~SS~~v-yg~~--~~~~~~e~~~ 130 (312)
T 3ko8_A 62 -KG-DVVFHFAANPE--VRLSTTEPIVHFNENVVATFNVLEWARQ----TGVRTVVFASSSTV-YGDA--DVIPTPEEEP 130 (312)
T ss_dssp -CC-SEEEECCSSCS--SSGGGSCHHHHHHHHHHHHHHHHHHHHH----HTCCEEEEEEEGGG-GCSC--SSSSBCTTSC
T ss_pred -CC-CEEEECCCCCC--chhhhhCHHHHHHHHHHHHHHHHHHHHH----cCCCEEEEeCcHHH-hCCC--CCCCCCCCCC
Confidence 22 99999999543 2345667888999999999988887743 45679999999754 3321 2234455556
Q ss_pred CCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCCCCC
Q psy13409 177 YSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGANI 256 (330)
Q Consensus 177 ~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (330)
..+...|+.+|++.+.+++.++.++
T Consensus 131 ~~p~~~Y~~sK~~~e~~~~~~~~~~------------------------------------------------------- 155 (312)
T 3ko8_A 131 YKPISVYGAAKAAGEVMCATYARLF------------------------------------------------------- 155 (312)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHH-------------------------------------------------------
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHh-------------------------------------------------------
Confidence 6778899999999999999998864
Q ss_pred CceeEEEeeCcccccCcccccCCCchhhHHHHHH------hh----hhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 257 TNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQR------VG----GLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 257 ~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
|++++.|.||.|.++...... ........... .+ ...+..++|+|+++++++..+......|..|+-.
T Consensus 156 -g~~~~~lrp~~v~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~ni~ 233 (312)
T 3ko8_A 156 -GVRCLAVRYANVVGPRLRHGV-IYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFEEMDAPFLALNVG 233 (312)
T ss_dssp -CCEEEEEEECEEECTTCCSSH-HHHHHHHHHHCTTEEEEC----CEECEEEHHHHHHHHHHHHHHHHHSCCSEEEEEES
T ss_pred -CCCEEEEeeccccCcCCCCCh-HHHHHHHHHhCCCCeEEcCCCCeEEeeEEHHHHHHHHHHHHHhccccCCCCcEEEEc
Confidence 689999999999988644210 00111111100 00 0124559999999999986622223456666544
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=5.7e-20 Score=173.44 Aligned_cols=157 Identities=14% Similarity=0.089 Sum_probs=120.3
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
.+.++++|+||||||+|+||.+++++|+++|++|++++|+... .++.++.+|+++.+++..+
T Consensus 13 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~------------------~~~~~~~~Dl~d~~~~~~~ 74 (347)
T 4id9_A 13 GLVPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG------------------TGGEEVVGSLEDGQALSDA 74 (347)
T ss_dssp --------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS------------------SCCSEEESCTTCHHHHHHH
T ss_pred cccccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC------------------CCccEEecCcCCHHHHHHH
Confidence 3456889999999999999999999999999999999998653 3567899999999988877
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 90 AQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
++ .+|++||+|+.... +...++..+++|+.++.++++++.+ .+.++||++||.. .++.......
T Consensus 75 ~~-------~~d~vih~A~~~~~----~~~~~~~~~~~nv~~~~~ll~a~~~----~~~~~~V~~SS~~-vyg~~~~~~~ 138 (347)
T 4id9_A 75 IM-------GVSAVLHLGAFMSW----APADRDRMFAVNVEGTRRLLDAASA----AGVRRFVFASSGE-VYPENRPEFL 138 (347)
T ss_dssp HT-------TCSEEEECCCCCCS----SGGGHHHHHHHHTHHHHHHHHHHHH----TTCSEEEEEEEGG-GTTTTSCSSS
T ss_pred Hh-------CCCEEEECCcccCc----chhhHHHHHHHHHHHHHHHHHHHHH----cCCCeEEEECCHH-HhCCCCCCCC
Confidence 65 58999999997642 3455688999999998888777643 4567999999964 4443223344
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHH
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKR 200 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~ 200 (330)
+++...+..+...|+.+|++.+.+++.++.+
T Consensus 139 ~~~E~~~~~~~~~Y~~sK~~~E~~~~~~~~~ 169 (347)
T 4id9_A 139 PVTEDHPLCPNSPYGLTKLLGEELVRFHQRS 169 (347)
T ss_dssp SBCTTSCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCCCCChHHHHHHHHHHHHHHHHHh
Confidence 5666666777889999999999999988775
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.4e-20 Score=173.88 Aligned_cols=168 Identities=18% Similarity=0.171 Sum_probs=129.7
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHHCC-------CEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCC
Q psy13409 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRG-------ARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSS 82 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~gIG~aia~~L~~~G-------~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~ 82 (330)
.+..++++++|||||+|+||.+++++|+++| ++|++++|+...... ....++.++.+|+++
T Consensus 8 ~~~~~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~------------~~~~~~~~~~~Dl~d 75 (342)
T 2hrz_A 8 ENLYFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA------------GFSGAVDARAADLSA 75 (342)
T ss_dssp CCSCCSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT------------TCCSEEEEEECCTTS
T ss_pred CCCCccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc------------ccCCceeEEEcCCCC
Confidence 3456889999999999999999999999999 899999998643211 024678899999999
Q ss_pred HHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhh-CCCeEEEEcCCCccc
Q psy13409 83 LKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKS-APARIINLSSLAHTW 161 (330)
Q Consensus 83 ~~si~~l~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~-~~g~IV~iSS~~~~~ 161 (330)
.++++++++ +.+|++||+||... ..+.++++..+++|+.++.++++++.+...+. +.++||++||.+. +
T Consensus 76 ~~~~~~~~~------~~~d~vih~A~~~~---~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS~~~-~ 145 (342)
T 2hrz_A 76 PGEAEKLVE------ARPDVIFHLAAIVS---GEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAV-F 145 (342)
T ss_dssp TTHHHHHHH------TCCSEEEECCCCCH---HHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGG-C
T ss_pred HHHHHHHHh------cCCCEEEECCccCc---ccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCchHh-h
Confidence 998887765 36899999999753 12356788899999999999999887754322 1489999999854 4
Q ss_pred CCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHh
Q psy13409 162 GDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRL 201 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~ 201 (330)
+... ..++++..+..+...|+.+|++.+.+++.++.+.
T Consensus 146 ~~~~--~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~ 183 (342)
T 2hrz_A 146 GAPL--PYPIPDEFHTTPLTSYGTQKAICELLLSDYSRRG 183 (342)
T ss_dssp CSSC--CSSBCTTCCCCCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCC--CCCcCCCCCCCCcchHHHHHHHHHHHHHHHHHhc
Confidence 4211 1334455555677899999999999999888764
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-20 Score=170.35 Aligned_cols=192 Identities=17% Similarity=0.085 Sum_probs=148.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
|++|||||+|+||++++++|+++|++|++++|+.... ...++.++.+|+++.+++.++++
T Consensus 3 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~---------------~~~~~~~~~~Dl~d~~~~~~~~~----- 62 (267)
T 3ay3_A 3 NRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGA---------------AEAHEEIVACDLADAQAVHDLVK----- 62 (267)
T ss_dssp EEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCC---------------CCTTEEECCCCTTCHHHHHHHHT-----
T ss_pred ceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCccc---------------cCCCccEEEccCCCHHHHHHHHc-----
Confidence 6899999999999999999999999999999986531 01346889999999988887765
Q ss_pred CCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccccC
Q psy13409 97 ESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKG 176 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~ 176 (330)
.+|++|||||.. ..+.++..+++|+.++.++++++.+ .+.++||++||.......+ ...+++...+
T Consensus 63 --~~d~vi~~a~~~------~~~~~~~~~~~n~~~~~~l~~a~~~----~~~~~iv~~SS~~~~~~~~--~~~~~~E~~~ 128 (267)
T 3ay3_A 63 --DCDGIIHLGGVS------VERPWNDILQANIIGAYNLYEAARN----LGKPRIVFASSNHTIGYYP--RTTRIDTEVP 128 (267)
T ss_dssp --TCSEEEECCSCC------SCCCHHHHHHHTHHHHHHHHHHHHH----TTCCEEEEEEEGGGSTTSB--TTSCBCTTSC
T ss_pred --CCCEEEECCcCC------CCCCHHHHHHHHHHHHHHHHHHHHH----hCCCEEEEeCCHHHhCCCC--CCCCCCCCCC
Confidence 479999999976 2356788899999999998888754 4468999999976543221 1234555555
Q ss_pred CCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCCCCC
Q psy13409 177 YSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGANI 256 (330)
Q Consensus 177 ~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (330)
..+...|+.+|++++.+++.++. .
T Consensus 129 ~~~~~~Y~~sK~~~e~~~~~~~~-----------------------------------------------------~--- 152 (267)
T 3ay3_A 129 RRPDSLYGLSKCFGEDLASLYYH-----------------------------------------------------K--- 152 (267)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHH-----------------------------------------------------T---
T ss_pred CCCCChHHHHHHHHHHHHHHHHH-----------------------------------------------------H---
Confidence 56678999999999999998864 2
Q ss_pred CceeEEEeeCccc-ccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccc
Q psy13409 257 TNVNTYAVHPGVV-DTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDK 313 (330)
Q Consensus 257 ~~i~v~~v~pG~v-~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~ 313 (330)
.|++++.|.||+| .++.. . ... ..+.+++|+|+.++.++..+
T Consensus 153 ~gi~~~~lrp~~v~~~~~~--------~-----~~~--~~~~~~~dva~~~~~~~~~~ 195 (267)
T 3ay3_A 153 FDIETLNIRIGSCFPKPKD--------A-----RMM--ATWLSVDDFMRLMKRAFVAP 195 (267)
T ss_dssp TCCCEEEEEECBCSSSCCS--------H-----HHH--HHBCCHHHHHHHHHHHHHSS
T ss_pred cCCCEEEEeceeecCCCCC--------C-----Cee--eccccHHHHHHHHHHHHhCC
Confidence 6899999999997 44321 0 011 12689999999999998664
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-19 Score=170.77 Aligned_cols=239 Identities=15% Similarity=0.048 Sum_probs=164.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
.+++|++|||||+|+||++++++|+++|++|++++|+........+.+....... ...++.++.+|++|.++++++++
T Consensus 22 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~- 99 (351)
T 3ruf_A 22 IFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTE-QWSRFCFIEGDIRDLTTCEQVMK- 99 (351)
T ss_dssp HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHH-HHTTEEEEECCTTCHHHHHHHTT-
T ss_pred CCCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccc-cCCceEEEEccCCCHHHHHHHhc-
Confidence 4678999999999999999999999999999999997654444444443311000 01578999999999988877764
Q ss_pred HHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccc
Q psy13409 93 ILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDIN 172 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~ 172 (330)
.+|++||+||.... ....+++...+++|+.++.++++++.+ .+.+++|++||... ++... ..+++
T Consensus 100 ------~~d~Vih~A~~~~~--~~~~~~~~~~~~~nv~~~~~ll~a~~~----~~~~~~v~~SS~~v-yg~~~--~~~~~ 164 (351)
T 3ruf_A 100 ------GVDHVLHQAALGSV--PRSIVDPITTNATNITGFLNILHAAKN----AQVQSFTYAASSST-YGDHP--ALPKV 164 (351)
T ss_dssp ------TCSEEEECCCCCCH--HHHHHCHHHHHHHHTHHHHHHHHHHHH----TTCSEEEEEEEGGG-GTTCC--CSSBC
T ss_pred ------CCCEEEECCccCCc--chhhhCHHHHHHHHHHHHHHHHHHHHH----cCCCEEEEEecHHh-cCCCC--CCCCc
Confidence 58999999996532 223456677899999998888777643 44579999999754 33211 13445
Q ss_pred cccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCC
Q psy13409 173 LEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPP 252 (330)
Q Consensus 173 ~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (330)
...+..+...|+.+|.+.+.+++.++.+.
T Consensus 165 E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--------------------------------------------------- 193 (351)
T 3ruf_A 165 EENIGNPLSPYAVTKYVNEIYAQVYARTY--------------------------------------------------- 193 (351)
T ss_dssp TTCCCCCCSHHHHHHHHHHHHHHHHHHHH---------------------------------------------------
T ss_pred cCCCCCCCChhHHHHHHHHHHHHHHHHHh---------------------------------------------------
Confidence 55555677899999999999999988763
Q ss_pred CCCCCceeEEEeeCcccccCcccccCCCchhhHHHHH-Hh--------h----hhhccChHHHHHHHHHhhccccccccC
Q psy13409 253 GANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQ-RV--------G----GLFIKSPLQGAQTTLYCALDKKCERET 319 (330)
Q Consensus 253 ~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~-~~--------~----~~~~~~~~e~a~~~~~l~~~~~~~~~~ 319 (330)
|+++..|.||.|-.+..............+.. .. + ...+..++|+|++++.++..+ ....
T Consensus 194 -----g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~--~~~~ 266 (351)
T 3ruf_A 194 -----GFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNILSALAK--DSAK 266 (351)
T ss_dssp -----CCCCEEEEECSEESTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHHHHHHTCC--GGGC
T ss_pred -----CCCEEEEeeCceeCcCCCCCcchhhHHHHHHHHHHcCCCcEEeCCCCeEEeeEEHHHHHHHHHHHHhhc--cccC
Confidence 57889999999987754332111111111111 11 0 011456899999999998652 1335
Q ss_pred ceecccC
Q psy13409 320 GLYYAKA 326 (330)
Q Consensus 320 G~~~~~~ 326 (330)
|..|+-.
T Consensus 267 ~~~~ni~ 273 (351)
T 3ruf_A 267 DNIYNVA 273 (351)
T ss_dssp SEEEEES
T ss_pred CCEEEeC
Confidence 6666544
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.2e-20 Score=175.07 Aligned_cols=237 Identities=11% Similarity=0.052 Sum_probs=157.3
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCC--CEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRG--ARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G--~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
+.+++|+||||||+|+||.+++++|+++| +.|++.+|..... ..+.+. ......++.++.+|++|.++++++
T Consensus 20 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~--~~~~l~----~~~~~~~~~~~~~Dl~d~~~~~~~ 93 (346)
T 4egb_A 20 FQSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSG--NLNNVK----SIQDHPNYYFVKGEIQNGELLEHV 93 (346)
T ss_dssp ----CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTC--CGGGGT----TTTTCTTEEEEECCTTCHHHHHHH
T ss_pred cccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEecccccc--chhhhh----hhccCCCeEEEEcCCCCHHHHHHH
Confidence 45788999999999999999999999999 6788887764210 001111 111246899999999999999998
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 90 AQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
++.. ++|++||+||..... ...++++..+++|+.++.++++++.+ .+.+++|++||.. .++.. ....
T Consensus 94 ~~~~-----~~d~Vih~A~~~~~~--~~~~~~~~~~~~nv~~~~~ll~a~~~----~~~~~~v~~SS~~-vy~~~-~~~~ 160 (346)
T 4egb_A 94 IKER-----DVQVIVNFAAESHVD--RSIENPIPFYDTNVIGTVTLLELVKK----YPHIKLVQVSTDE-VYGSL-GKTG 160 (346)
T ss_dssp HHHH-----TCCEEEECCCCC-----------CHHHHHHTHHHHHHHHHHHH----STTSEEEEEEEGG-GGCCC-CSSC
T ss_pred Hhhc-----CCCEEEECCcccchh--hhhhCHHHHHHHHHHHHHHHHHHHHh----cCCCEEEEeCchH-HhCCC-CcCC
Confidence 8764 589999999976432 24466778899999998888777644 4557899999975 34421 1223
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
++++..+..+...|+.+|++.+.+++.++.+
T Consensus 161 ~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~------------------------------------------------- 191 (346)
T 4egb_A 161 RFTEETPLAPNSPYSSSKASADMIALAYYKT------------------------------------------------- 191 (346)
T ss_dssp CBCTTSCCCCCSHHHHHHHHHHHHHHHHHHH-------------------------------------------------
T ss_pred CcCCCCCCCCCChhHHHHHHHHHHHHHHHHH-------------------------------------------------
Confidence 4555556667789999999999999998876
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHH--Hh---hh----hhccChHHHHHHHHHhhccccccccCc
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQ--RV---GG----LFIKSPLQGAQTTLYCALDKKCERETG 320 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~--~~---~~----~~~~~~~e~a~~~~~l~~~~~~~~~~G 320 (330)
.|++++.|.||.|-++................. ++ +. ..+..++|+|+++++++..+. +|
T Consensus 192 -------~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~----~g 260 (346)
T 4egb_A 192 -------YQLPVIVTRCSNNYGPYQYPEKLIPLMVTNALEGKKLPLYGDGLNVRDWLHVTDHCSAIDVVLHKGR----VG 260 (346)
T ss_dssp -------HCCCEEEEEECEEESTTCCTTSHHHHHHHHHHTTCCCEEETTSCCEECEEEHHHHHHHHHHHHHHCC----TT
T ss_pred -------hCCCEEEEeecceeCcCCCccchHHHHHHHHHcCCCceeeCCCCeEEeeEEHHHHHHHHHHHHhcCC----CC
Confidence 368899999999988754321100111111110 00 00 113458999999999986643 66
Q ss_pred eecccCC
Q psy13409 321 LYYAKAD 327 (330)
Q Consensus 321 ~~~~~~~ 327 (330)
..|+-..
T Consensus 261 ~~~~i~~ 267 (346)
T 4egb_A 261 EVYNIGG 267 (346)
T ss_dssp CEEEECC
T ss_pred CEEEECC
Confidence 6665443
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-20 Score=166.06 Aligned_cols=196 Identities=17% Similarity=0.152 Sum_probs=145.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCC-HHHHHHHHHHHHh
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSS-LKSVRKCAQEILD 95 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~-~~si~~l~~~i~~ 95 (330)
++++||||+|+||++++++|+++|++|++++|+.+++.. ..++.++.+|++| .+++.++++
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~--------------~~~~~~~~~D~~d~~~~~~~~~~---- 62 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQ--------------YNNVKAVHFDVDWTPEEMAKQLH---- 62 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCC--------------CTTEEEEECCTTSCHHHHHTTTT----
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhh--------------cCCceEEEecccCCHHHHHHHHc----
Confidence 379999999999999999999999999999999764321 1568999999999 887766653
Q ss_pred cCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccccccc
Q psy13409 96 NESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEK 175 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~ 175 (330)
.+|++|||||... .+.+++|+.++.++++++ .+.+.++||++||..+..+. +.+. .
T Consensus 63 ---~~d~vi~~ag~~~----------~~~~~~n~~~~~~l~~a~----~~~~~~~iv~~SS~~~~~~~------~~~e-~ 118 (219)
T 3dqp_A 63 ---GMDAIINVSGSGG----------KSLLKVDLYGAVKLMQAA----EKAEVKRFILLSTIFSLQPE------KWIG-A 118 (219)
T ss_dssp ---TCSEEEECCCCTT----------SSCCCCCCHHHHHHHHHH----HHTTCCEEEEECCTTTTCGG------GCCS-H
T ss_pred ---CCCEEEECCcCCC----------CCcEeEeHHHHHHHHHHH----HHhCCCEEEEECcccccCCC------cccc-c
Confidence 5899999999764 126778999988777766 34456799999997654332 1111 1
Q ss_pred CCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCCCC
Q psy13409 176 GYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGAN 255 (330)
Q Consensus 176 ~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (330)
+..+...|+.+|++.+.+++ . .
T Consensus 119 ~~~~~~~Y~~sK~~~e~~~~------~--------------------------------------------------~-- 140 (219)
T 3dqp_A 119 GFDALKDYYIAKHFADLYLT------K--------------------------------------------------E-- 140 (219)
T ss_dssp HHHHTHHHHHHHHHHHHHHH------H--------------------------------------------------S--
T ss_pred ccccccHHHHHHHHHHHHHH------h--------------------------------------------------c--
Confidence 12346789999999988876 2 3
Q ss_pred CCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceeccc
Q psy13409 256 ITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAK 325 (330)
Q Consensus 256 ~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~ 325 (330)
.+++++.|.||++.++......... .....+.+++|+|+.+++++.++. ..|+.|+-
T Consensus 141 -~~i~~~ilrp~~v~g~~~~~~~~~~---------~~~~~~i~~~Dva~~i~~~l~~~~---~~g~~~~i 197 (219)
T 3dqp_A 141 -TNLDYTIIQPGALTEEEATGLIDIN---------DEVSASNTIGDVADTIKELVMTDH---SIGKVISM 197 (219)
T ss_dssp -CCCEEEEEEECSEECSCCCSEEEES---------SSCCCCEEHHHHHHHHHHHHTCGG---GTTEEEEE
T ss_pred -cCCcEEEEeCceEecCCCCCccccC---------CCcCCcccHHHHHHHHHHHHhCcc---ccCcEEEe
Confidence 7899999999999887543221110 112237799999999999997753 24666654
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=6.7e-19 Score=169.26 Aligned_cols=170 Identities=13% Similarity=0.132 Sum_probs=121.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHH----------------HHHHHHHhhcccCCCCeEEEE
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAET----------------AADDIRTSLKDVKDAGEVVIR 76 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~----------------~~~~l~~~~~~~~~~~~v~~i 76 (330)
-.+++++|||||+|.||++++++|+++|++|++++|+.....+ ..+.+... ...++.++
T Consensus 8 ~~~~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~v~~~ 82 (404)
T 1i24_A 8 HHHGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKAL-----TGKSIELY 82 (404)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHH-----HCCCCEEE
T ss_pred ccCCCeEEEeCCCcHHHHHHHHHHHhCCCeEEEEEecCccccccccccccccccchhhhhhhhHhhc-----cCCceEEE
Confidence 3578999999999999999999999999999999987543211 11111111 13568889
Q ss_pred EccCCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCC-CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCC-CeEEEE
Q psy13409 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCP-RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAP-ARIINL 154 (330)
Q Consensus 77 ~~Dls~~~si~~l~~~i~~~~g~iDvlInnAG~~~~~-~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~-g~IV~i 154 (330)
.+|+++.++++++++.. ++|++||+||..... ...+.+++...+++|+.++.++++++.+. +. ++||++
T Consensus 83 ~~Dl~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~----~~~~~~V~~ 153 (404)
T 1i24_A 83 VGDICDFEFLAESFKSF-----EPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEF----GEECHLVKL 153 (404)
T ss_dssp ESCTTSHHHHHHHHHHH-----CCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH----CTTCEEEEE
T ss_pred ECCCCCHHHHHHHHhcc-----CCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHh----CCCcEEEEe
Confidence 99999999998888765 589999999976432 12245566778999999999988887543 33 599999
Q ss_pred cCCCcccCCCCCcccccccc--------------cCCCcchhhHHhHHHHHHHHHHHHHH
Q psy13409 155 SSLAHTWGDGSMHFEDINLE--------------KGYSATGAYGRSKLANILFTTELAKR 200 (330)
Q Consensus 155 SS~~~~~~~~~~~~~~~~~~--------------~~~~~~~~Y~asK~a~~~~~~~la~~ 200 (330)
||.+ .++... .+++.. .+..+...|+.||++.+.+++.++.+
T Consensus 154 SS~~-vyg~~~---~~~~E~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~ 209 (404)
T 1i24_A 154 GTMG-EYGTPN---IDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA 209 (404)
T ss_dssp CCGG-GGCCCS---SCBCSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred CcHH-HhCCCC---CCCCccccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHh
Confidence 9964 344321 111111 23456678999999999999988875
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-20 Score=162.73 Aligned_cols=203 Identities=13% Similarity=0.067 Sum_probs=143.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
++|+++||||+|+||++++++|+++|++|++++|+.+++... ...++.++.+|+++++++.++++
T Consensus 2 ~~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~------------~~~~~~~~~~D~~~~~~~~~~~~--- 66 (206)
T 1hdo_A 2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE------------GPRPAHVVVGDVLQAADVDKTVA--- 66 (206)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS------------SCCCSEEEESCTTSHHHHHHHHT---
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccc------------cCCceEEEEecCCCHHHHHHHHc---
Confidence 348999999999999999999999999999999997653210 14568899999999998877764
Q ss_pred hcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccc
Q psy13409 95 DNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLE 174 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~ 174 (330)
.+|++||++|..... + + .++|+.+...+++.+. +.+.+++|++||.......+.
T Consensus 67 ----~~d~vi~~a~~~~~~---~---~---~~~n~~~~~~~~~~~~----~~~~~~~v~~Ss~~~~~~~~~--------- 120 (206)
T 1hdo_A 67 ----GQDAVIVLLGTRNDL---S---P---TTVMSEGARNIVAAMK----AHGVDKVVACTSAFLLWDPTK--------- 120 (206)
T ss_dssp ----TCSEEEECCCCTTCC---S---C---CCHHHHHHHHHHHHHH----HHTCCEEEEECCGGGTSCTTC---------
T ss_pred ----CCCEEEECccCCCCC---C---c---cchHHHHHHHHHHHHH----HhCCCeEEEEeeeeeccCccc---------
Confidence 369999999976431 1 1 2377778666666554 445689999999754322100
Q ss_pred cCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCCC
Q psy13409 175 KGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGA 254 (330)
Q Consensus 175 ~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (330)
.+.....|+.+|++++.+++ .
T Consensus 121 -~~~~~~~y~~~K~~~e~~~~---------------------------------------------------------~- 141 (206)
T 1hdo_A 121 -VPPRLQAVTDDHIRMHKVLR---------------------------------------------------------E- 141 (206)
T ss_dssp -SCGGGHHHHHHHHHHHHHHH---------------------------------------------------------H-
T ss_pred -ccccchhHHHHHHHHHHHHH---------------------------------------------------------h-
Confidence 01156789999999988873 1
Q ss_pred CCCceeEEEeeCccc-ccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCCCC
Q psy13409 255 NITNVNTYAVHPGVV-DTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKADLP 329 (330)
Q Consensus 255 ~~~~i~v~~v~pG~v-~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~~~ 329 (330)
.+++++.|.||++ .++........... .+. ..+.+++|+|+.+++++.++ ..+|+.|.-.+..
T Consensus 142 --~~i~~~~lrp~~~~~~~~~~~~~~~~~~-----~~~--~~~i~~~Dva~~~~~~~~~~---~~~g~~~~i~~g~ 205 (206)
T 1hdo_A 142 --SGLKYVAVMPPHIGDQPLTGAYTVTLDG-----RGP--SRVISKHDLGHFMLRCLTTD---EYDGHSTYPSHQY 205 (206)
T ss_dssp --TCSEEEEECCSEEECCCCCSCCEEESSS-----CSS--CSEEEHHHHHHHHHHTTSCS---TTTTCEEEEECCC
T ss_pred --CCCCEEEEeCCcccCCCCCcceEecccC-----CCC--CCccCHHHHHHHHHHHhcCc---cccccceeeeccc
Confidence 5799999999998 44432221110000 000 13789999999999999664 3578888765544
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=9e-20 Score=169.71 Aligned_cols=215 Identities=15% Similarity=0.075 Sum_probs=151.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
+++|||||+|+||++++++|+++|++|++++|......+ . ...++.++.+|+++.++++++++..
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~-------~-----~~~~~~~~~~Dl~~~~~~~~~~~~~--- 65 (311)
T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRE-------N-----VPKGVPFFRVDLRDKEGVERAFREF--- 65 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEECCCSSCCGG-------G-----SCTTCCEECCCTTCHHHHHHHHHHH---
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCCcCchh-------h-----cccCeEEEECCCCCHHHHHHHHHhc---
Confidence 369999999999999999999999999999985432100 0 1235678899999999998887652
Q ss_pred CCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccccC
Q psy13409 97 ESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKG 176 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~ 176 (330)
.+|++||+|+.... ..+.++++..+++|+.+++++++++.+ .+.++||++||.++.++.. ....+++...+
T Consensus 66 --~~d~vi~~a~~~~~--~~~~~~~~~~~~~N~~g~~~l~~a~~~----~~~~~iv~~SS~~~~~g~~-~~~~~~~E~~~ 136 (311)
T 2p5y_A 66 --RPTHVSHQAAQASV--KVSVEDPVLDFEVNLLGGLNLLEACRQ----YGVEKLVFASTGGAIYGEV-PEGERAEETWP 136 (311)
T ss_dssp --CCSEEEECCSCCCH--HHHHHCHHHHHHHHTHHHHHHHHHHHH----TTCSEEEEEEEHHHHHCCC-CTTCCBCTTSC
T ss_pred --CCCEEEECccccCc--hhhhhCHHHHHHHHHHHHHHHHHHHHH----hCCCEEEEeCCChhhcCCC-CCCCCcCCCCC
Confidence 58999999996532 223466788999999999998887643 4457999999974444420 01122333334
Q ss_pred CCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCCCCC
Q psy13409 177 YSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGANI 256 (330)
Q Consensus 177 ~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (330)
..+...|+.+|++.+.+++.++.+
T Consensus 137 ~~~~~~Y~~sK~~~e~~~~~~~~~-------------------------------------------------------- 160 (311)
T 2p5y_A 137 PRPKSPYAASKAAFEHYLSVYGQS-------------------------------------------------------- 160 (311)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHH--------------------------------------------------------
T ss_pred CCCCChHHHHHHHHHHHHHHHHHH--------------------------------------------------------
Confidence 456678999999999999999875
Q ss_pred CceeEEEeeCcccccCcccccCCCchhhHHHH----H--H---h-----hh----hhccChHHHHHHHHHhhcc
Q psy13409 257 TNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY----Q--R---V-----GG----LFIKSPLQGAQTTLYCALD 312 (330)
Q Consensus 257 ~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~----~--~---~-----~~----~~~~~~~e~a~~~~~l~~~ 312 (330)
.|++++.|.||.|.++....... ......+. . + . +. ..+..++|+|+++++++..
T Consensus 161 ~~~~~~~lrp~~v~Gp~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~ 233 (311)
T 2p5y_A 161 YGLKWVSLRYGNVYGPRQDPHGE-AGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAEAHALALFS 233 (311)
T ss_dssp HCCCEEEEEECEEECTTCCSSST-THHHHHHHHHHHHTCCEEEECSSSTTSCCCEECEEEHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeeccccCcCCCCCCc-CcHHHHHHHHHHcCCCcEEEecccCCCCCeEEeeEEHHHHHHHHHHHHhC
Confidence 36889999999998886432211 11111111 1 0 0 11 1245689999999999854
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.1e-20 Score=173.07 Aligned_cols=228 Identities=13% Similarity=0.042 Sum_probs=145.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEec-ChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACR-SLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R-~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
||++|||||+|+||++++++|+++|++|+++.| +.+...+. ..+... . ....++.++.+|++|.++++++++
T Consensus 1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~-~~~~~~-~--~~~~~~~~~~~Dl~d~~~~~~~~~--- 73 (322)
T 2p4h_X 1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDV-SFLTNL-P--GASEKLHFFNADLSNPDSFAAAIE--- 73 (322)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CCC-HHHHTS-T--THHHHEEECCCCTTCGGGGHHHHT---
T ss_pred CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhHH-HHHHhh-h--ccCCceEEEecCCCCHHHHHHHHc---
Confidence 689999999999999999999999999999988 64321111 111110 0 001357889999999998887765
Q ss_pred hcCCCeeEEEEcCCCCCCCCCCChhh-HHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccccc
Q psy13409 95 DNESAIHLLINNAGVMMCPRQLTEDG-YELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINL 173 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~~~~~~~~-~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~ 173 (330)
.+|++||+|+.. ....++ +++.+++|+.+++++++++.+. .+.++||++||.++..+.+.. ..+++.
T Consensus 74 ----~~d~vih~A~~~----~~~~~~~~~~~~~~nv~gt~~l~~aa~~~---~~~~~iV~~SS~~~~~~~~~~-~~~~~e 141 (322)
T 2p4h_X 74 ----GCVGIFHTASPI----DFAVSEPEEIVTKRTVDGALGILKACVNS---KTVKRFIYTSSGSAVSFNGKD-KDVLDE 141 (322)
T ss_dssp ----TCSEEEECCCCC------------CHHHHHHHHHHHHHHHHHTTC---SSCCEEEEEEEGGGTSCSSSC-CSEECT
T ss_pred ----CCCEEEEcCCcc----cCCCCChHHHHHHHHHHHHHHHHHHHHhc---CCccEEEEeccHHHcccCCCC-CeecCC
Confidence 369999999743 112222 3558899999999998887553 135799999998765543211 111111
Q ss_pred ccC---------CCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccc
Q psy13409 174 EKG---------YSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYC 244 (330)
Q Consensus 174 ~~~---------~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
... .+....|+.||++.+.+++.++.+
T Consensus 142 ~~~~~~~~~~~~~p~~~~Y~~sK~~~e~~~~~~~~~-------------------------------------------- 177 (322)
T 2p4h_X 142 SDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQ-------------------------------------------- 177 (322)
T ss_dssp TCCCCHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHH--------------------------------------------
T ss_pred ccccchhhhcccCcccccHHHHHHHHHHHHHHHHHh--------------------------------------------
Confidence 110 011126999999877776665542
Q ss_pred cccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHH---HH----Hh--hhhhccChHHHHHHHHHhhccccc
Q psy13409 245 KNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWL---YQ----RV--GGLFIKSPLQGAQTTLYCALDKKC 315 (330)
Q Consensus 245 ~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~---~~----~~--~~~~~~~~~e~a~~~~~l~~~~~~ 315 (330)
.|+++++|+||.|.++....... ...... .. .+ ++..+..++|+|+++++++..+
T Consensus 178 ------------~gi~~~~lrp~~v~g~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-- 241 (322)
T 2p4h_X 178 ------------NGIDVVTLILPFIVGRFVCPKLP--DSIEKALVLVLGKKEQIGVTRFHMVHVDDVARAHIYLLENS-- 241 (322)
T ss_dssp ------------TTCCEEEEEECEEESCCCSSSCC--HHHHHHTHHHHSCGGGCCEEEEEEEEHHHHHHHHHHHHHSC--
T ss_pred ------------cCCcEEEEcCCceECCCCCCCCC--chHHHHHHHHhCCCccCcCCCcCEEEHHHHHHHHHHHhhCc--
Confidence 57999999999999986543211 111111 00 01 1112679999999999998553
Q ss_pred cccCceec
Q psy13409 316 ERETGLYY 323 (330)
Q Consensus 316 ~~~~G~~~ 323 (330)
..+|.|+
T Consensus 242 -~~~g~~~ 248 (322)
T 2p4h_X 242 -VPGGRYN 248 (322)
T ss_dssp -CCCEEEE
T ss_pred -CCCCCEE
Confidence 2467754
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-19 Score=169.82 Aligned_cols=217 Identities=15% Similarity=0.072 Sum_probs=147.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
+++|||||+|+||++++++|+++|++|++++|+....+++ . ..++.++.+|++|.++++++++
T Consensus 14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l----~--------~~~~~~~~~Dl~d~~~~~~~~~----- 76 (342)
T 2x4g_A 14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRL----A--------YLEPECRVAEMLDHAGLERALR----- 76 (342)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGG----G--------GGCCEEEECCTTCHHHHHHHTT-----
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhh----c--------cCCeEEEEecCCCHHHHHHHHc-----
Confidence 5899999999999999999999999999999987643221 1 1257889999999988877654
Q ss_pred CCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccccC
Q psy13409 97 ESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKG 176 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~ 176 (330)
.+|++||+||... ...++++..+++|+.++.++++++.+. +.+++|++||.......... ..+ ++..+
T Consensus 77 --~~d~vih~a~~~~----~~~~~~~~~~~~n~~~~~~l~~a~~~~----~~~~~v~~SS~~~~~~~~~~-~~~-~E~~~ 144 (342)
T 2x4g_A 77 --GLDGVIFSAGYYP----SRPRRWQEEVASALGQTNPFYAACLQA----RVPRILYVGSAYAMPRHPQG-LPG-HEGLF 144 (342)
T ss_dssp --TCSEEEEC----------------CHHHHHHHHHHHHHHHHHHH----TCSCEEEECCGGGSCCCTTS-SCB-CTTCC
T ss_pred --CCCEEEECCccCc----CCCCCHHHHHHHHHHHHHHHHHHHHHc----CCCeEEEECCHHhhCcCCCC-CCC-CCCCC
Confidence 4899999999653 234567788999999999998887663 45799999997654332110 011 23333
Q ss_pred CCc----chhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCC
Q psy13409 177 YSA----TGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPP 252 (330)
Q Consensus 177 ~~~----~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (330)
..+ ...|+.+|++.+.+++.++.
T Consensus 145 ~~p~~~~~~~Y~~sK~~~e~~~~~~~~----------------------------------------------------- 171 (342)
T 2x4g_A 145 YDSLPSGKSSYVLCKWALDEQAREQAR----------------------------------------------------- 171 (342)
T ss_dssp CSSCCTTSCHHHHHHHHHHHHHHHHHH-----------------------------------------------------
T ss_pred CCccccccChHHHHHHHHHHHHHHHhh-----------------------------------------------------
Confidence 334 67899999999999998874
Q ss_pred CCCCCceeEEEeeCcccccCcc-cccCCCchhhHHHHHH----h--hhhhccChHHHHHHHHHhhccccccccCceeccc
Q psy13409 253 GANITNVNTYAVHPGVVDTELS-RHFDSIIPGTAWLYQR----V--GGLFIKSPLQGAQTTLYCALDKKCERETGLYYAK 325 (330)
Q Consensus 253 ~~~~~~i~v~~v~pG~v~t~~~-~~~~~~~~~~~~~~~~----~--~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~ 325 (330)
.|++++.|.||.|.++.. +.. ........... + .+..+..++|+|+++++++..+. .|+.|+-
T Consensus 172 ----~g~~~~ilrp~~v~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~~----~g~~~~v 241 (342)
T 2x4g_A 172 ----NGLPVVIGIPGMVLGELDIGPT--TGRVITAIGNGEMTHYVAGQRNVIDAAEAGRGLLMALERGR----IGERYLL 241 (342)
T ss_dssp ----TTCCEEEEEECEEECSCCSSCS--TTHHHHHHHTTCCCEEECCEEEEEEHHHHHHHHHHHHHHSC----TTCEEEE
T ss_pred ----cCCcEEEEeCCceECCCCcccc--HHHHHHHHHcCCCccccCCCcceeeHHHHHHHHHHHHhCCC----CCceEEE
Confidence 258899999999998865 211 11111111111 0 11225689999999999986543 2555543
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-19 Score=158.34 Aligned_cols=213 Identities=15% Similarity=0.072 Sum_probs=133.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
+++|||||+|+||++++++|+++|++|++++|+.+++... ..++.++.+|++|.++ +.
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~-------------~~~~~~~~~D~~d~~~--~~------- 58 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQT-------------HKDINILQKDIFDLTL--SD------- 58 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHH-------------CSSSEEEECCGGGCCH--HH-------
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhc-------------cCCCeEEeccccChhh--hh-------
Confidence 4699999999999999999999999999999998765432 1457889999999887 11
Q ss_pred CCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccccC
Q psy13409 97 ESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKG 176 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~ 176 (330)
+..+|++|||||.... ...+|+.+ ++.+++.+.+.+.+++|++||..+..+.+... +.....+
T Consensus 59 ~~~~d~vi~~ag~~~~-----------~~~~~~~~----~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~--~~~~~~~ 121 (221)
T 3ew7_A 59 LSDQNVVVDAYGISPD-----------EAEKHVTS----LDHLISVLNGTVSPRLLVVGGAASLQIDEDGN--TLLESKG 121 (221)
T ss_dssp HTTCSEEEECCCSSTT-----------TTTSHHHH----HHHHHHHHCSCCSSEEEEECCCC------------------
T ss_pred hcCCCEEEECCcCCcc-----------ccchHHHH----HHHHHHHHHhcCCceEEEEecceEEEcCCCCc--cccccCC
Confidence 2468999999998421 12345555 66666767777679999999988776643211 1111222
Q ss_pred CCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCCCCC
Q psy13409 177 YSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGANI 256 (330)
Q Consensus 177 ~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (330)
..+...|+.+|++.+.+. .+.. . .
T Consensus 122 ~~~~~~y~~~k~~~e~~~-~~~~--~--------------------------------------------------~--- 145 (221)
T 3ew7_A 122 LREAPYYPTARAQAKQLE-HLKS--H--------------------------------------------------Q--- 145 (221)
T ss_dssp ---CCCSCCHHHHHHHHH-HHHT--T--------------------------------------------------T---
T ss_pred CCCHHHHHHHHHHHHHHH-HHHh--h--------------------------------------------------c---
Confidence 334567999999988763 2221 1 2
Q ss_pred CceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCCC
Q psy13409 257 TNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKADL 328 (330)
Q Consensus 257 ~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~~ 328 (330)
.+++++.|.||++.++..... ............-......+++|+|++++.++.++. ..|+.|+-.++
T Consensus 146 ~gi~~~ivrp~~v~g~~~~~~-~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~---~~g~~~~~~~~ 213 (221)
T 3ew7_A 146 AEFSWTYISPSAMFEPGERTG-DYQIGKDHLLFGSDGNSFISMEDYAIAVLDEIERPN---HLNEHFTVAGK 213 (221)
T ss_dssp TTSCEEEEECSSCCCCC----------------------CCCHHHHHHHHHHHHHSCS---CTTSEEECCC-
T ss_pred cCccEEEEeCcceecCCCccC-ceEeccccceecCCCCceEeHHHHHHHHHHHHhCcc---ccCCEEEECCC
Confidence 689999999999988721110 000000111111111237899999999999997764 36777766554
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-19 Score=170.32 Aligned_cols=228 Identities=15% Similarity=0.085 Sum_probs=157.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHC--CCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKR--GARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~--G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
|++|||||+|+||++++++|+++ |++|++++|+..... .+.+... ...++.++.+|+++.++++++++.
T Consensus 5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~--~~~~~~~-----~~~~~~~~~~Dl~d~~~~~~~~~~-- 75 (348)
T 1oc2_A 5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGN--KANLEAI-----LGDRVELVVGDIADAELVDKLAAK-- 75 (348)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCC--GGGTGGG-----CSSSEEEEECCTTCHHHHHHHHTT--
T ss_pred cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCC--hhHHhhh-----ccCCeEEEECCCCCHHHHHHHhhc--
Confidence 68999999999999999999999 899999999752100 0001110 135788999999999888777653
Q ss_pred hcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCC--------
Q psy13409 95 DNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSM-------- 166 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~-------- 166 (330)
+|++||+||.... ..+.++++..+++|+.++.++++++.+. + ++||++||... ++....
T Consensus 76 -----~d~vih~A~~~~~--~~~~~~~~~~~~~Nv~g~~~l~~a~~~~----~-~~~v~~SS~~v-yg~~~~~~~~~~~~ 142 (348)
T 1oc2_A 76 -----ADAIVHYAAESHN--DNSLNDPSPFIHTNFIGTYTLLEAARKY----D-IRFHHVSTDEV-YGDLPLREDLPGHG 142 (348)
T ss_dssp -----CSEEEECCSCCCH--HHHHHCCHHHHHHHTHHHHHHHHHHHHH----T-CEEEEEEEGGG-GCCBCCGGGSTTTT
T ss_pred -----CCEEEECCcccCc--cchhhCHHHHHHHHHHHHHHHHHHHHHh----C-CeEEEecccce-eCCCcccccccccc
Confidence 4999999997531 2234566788999999999999988764 3 49999999653 332110
Q ss_pred --cccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccc
Q psy13409 167 --HFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYC 244 (330)
Q Consensus 167 --~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
...+++...+..+...|+.+|++.+.+++.++.++
T Consensus 143 ~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~------------------------------------------- 179 (348)
T 1oc2_A 143 EGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSF------------------------------------------- 179 (348)
T ss_dssp CSTTSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH-------------------------------------------
T ss_pred cccCCCcCCCCCCCCCCccHHHHHHHHHHHHHHHHHh-------------------------------------------
Confidence 01334444455677899999999999999998753
Q ss_pred cccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHH--Hh---h----hhhccChHHHHHHHHHhhccccc
Q psy13409 245 KNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQ--RV---G----GLFIKSPLQGAQTTLYCALDKKC 315 (330)
Q Consensus 245 ~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~--~~---~----~~~~~~~~e~a~~~~~l~~~~~~ 315 (330)
|++++.|.||.|.++................. ++ + ...+..++|+|+++++++..+
T Consensus 180 -------------gi~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~-- 244 (348)
T 1oc2_A 180 -------------GVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAILTKG-- 244 (348)
T ss_dssp -------------CCEEEEEEECCEESTTCCTTSHHHHHHHHHHHTCCCEEETTSCCEEECEEHHHHHHHHHHHHHHC--
T ss_pred -------------CCCEEEEeeceeeCCCCCccchHHHHHHHHHcCCCceEecCCCceEeeEEHHHHHHHHHHHhhCC--
Confidence 68999999999988865321100011111111 00 0 112567999999999998543
Q ss_pred cccCceecccC
Q psy13409 316 ERETGLYYAKA 326 (330)
Q Consensus 316 ~~~~G~~~~~~ 326 (330)
.+|+.|+-.
T Consensus 245 --~~g~~~~i~ 253 (348)
T 1oc2_A 245 --RMGETYLIG 253 (348)
T ss_dssp --CTTCEEEEC
T ss_pred --CCCCeEEeC
Confidence 267666544
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.6e-19 Score=169.59 Aligned_cols=174 Identities=18% Similarity=0.177 Sum_probs=125.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHH-HCCCEEEEEecChhH---------HHHHHHHHHHhhcccCCCCe---EEEEEccCCC
Q psy13409 16 GKTAIVTGSNTGIGKCTANELA-KRGARVIMACRSLEK---------AETAADDIRTSLKDVKDAGE---VVIRQLDLSS 82 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~-~~G~~Vil~~R~~~~---------l~~~~~~l~~~~~~~~~~~~---v~~i~~Dls~ 82 (330)
++++|||||+|+||++++++|+ ++|++|++++|+... .+.+.+.+++.... ....+ +.++.+|+++
T Consensus 2 ~m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~d 80 (397)
T 1gy8_A 2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGP-KPPWADRYAALEVGDVRN 80 (397)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSS-CCTTTTCCCEEEESCTTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecCCcccccccccchHHHHHHHHHHhhcc-ccccCCceEEEEECCCCC
Confidence 4689999999999999999999 999999999997643 33333323322100 00124 8899999999
Q ss_pred HHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccC
Q psy13409 83 LKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWG 162 (330)
Q Consensus 83 ~~si~~l~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~ 162 (330)
.++++++++. ++++|+|||+||..... .+.++++..+++|+.+++++++++. +.+.++||++||.+ .++
T Consensus 81 ~~~~~~~~~~----~~~~d~vih~A~~~~~~--~~~~~~~~~~~~Nv~g~~~ll~a~~----~~~~~~iv~~SS~~-v~g 149 (397)
T 1gy8_A 81 EDFLNGVFTR----HGPIDAVVHMCAFLAVG--ESVRDPLKYYDNNVVGILRLLQAML----LHKCDKIIFSSSAA-IFG 149 (397)
T ss_dssp HHHHHHHHHH----SCCCCEEEECCCCCCHH--HHHHCHHHHHHHHHHHHHHHHHHHH----HTTCCEEEEEEEGG-GTB
T ss_pred HHHHHHHHHh----cCCCCEEEECCCccCcC--cchhhHHHHHHHHhHHHHHHHHHHH----HhCCCEEEEECCHH-HhC
Confidence 9998877753 45699999999976321 1345678899999999999888753 34567999999954 444
Q ss_pred CCCC-----cccccccccCCCcchhhHHhHHHHHHHHHHHHHHh
Q psy13409 163 DGSM-----HFEDINLEKGYSATGAYGRSKLANILFTTELAKRL 201 (330)
Q Consensus 163 ~~~~-----~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~ 201 (330)
.... ...+++...+..+...|+.+|++.+.+++.++.++
T Consensus 150 ~~~~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~ 193 (397)
T 1gy8_A 150 NPTMGSVSTNAEPIDINAKKSPESPYGESKLIAERMIRDCAEAY 193 (397)
T ss_dssp SCCC-----CCCCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccccccccCcCccCCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 3210 02334444445557799999999999999998764
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.5e-19 Score=172.75 Aligned_cols=233 Identities=12% Similarity=0.037 Sum_probs=155.3
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChh---HHHHHHHHHHHhhcc---cCCCCeEEEEEccCCCHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLE---KAETAADDIRTSLKD---VKDAGEVVIRQLDLSSLKS 85 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~---~l~~~~~~l~~~~~~---~~~~~~v~~i~~Dls~~~s 85 (330)
.+..+|+||||||+|+||++++++|++.|++|++++|+.. .++++.+.+...+.. .....++.++.+|+++.++
T Consensus 65 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 144 (427)
T 4f6c_A 65 SHRPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDD 144 (427)
T ss_dssp CCCCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CC
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCccc
Confidence 3567899999999999999999999999999999999977 444444444332100 0013678999999999887
Q ss_pred HHHHHHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCC
Q psy13409 86 VRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGS 165 (330)
Q Consensus 86 i~~l~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~ 165 (330)
+. ..+.+|+||||||... ..++++..+++|+.++.++++++.+ +.+++|++||... |...
T Consensus 145 l~--------~~~~~d~Vih~A~~~~-----~~~~~~~~~~~Nv~g~~~l~~aa~~-----~~~~~v~~SS~~~--G~~~ 204 (427)
T 4f6c_A 145 VV--------LPENMDTIIHAGARTD-----HFGDDDEFEKVNVQGTVDVIRLAQQ-----HHARLIYVSTISV--GTYF 204 (427)
T ss_dssp CC--------CSSCCSEEEECCCCC------------CHHHHHHHHHHHHHHHHHH-----TTCEEEEEEEGGG--GSEE
T ss_pred CC--------CcCCCCEEEECCcccC-----CCCCHHHHHHHHHHHHHHHHHHHHh-----cCCcEEEECchHh--CCCc
Confidence 76 4578999999999764 2356788899999999999988766 3589999999876 3210
Q ss_pred ---CcccccccccC---CCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCC
Q psy13409 166 ---MHFEDINLEKG---YSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTP 239 (330)
Q Consensus 166 ---~~~~~~~~~~~---~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (330)
....+++...+ ......|+.+|++.+.+++.++.
T Consensus 205 ~~~~~~~~~~E~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---------------------------------------- 244 (427)
T 4f6c_A 205 DIDTEDVTFSEADVYKGQLLTSPYTRSKFYSELKVLEAVN---------------------------------------- 244 (427)
T ss_dssp CSSCSCCEECTTCSCSSCCCCSHHHHHHHHHHHHHHHHHH----------------------------------------
T ss_pred cCCCCCccccccccccCCCCCCchHHHHHHHHHHHHHHHH----------------------------------------
Confidence 01112222222 34678999999999999988652
Q ss_pred CcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCc---hhhHHHHHH------------hhhhhccChHHHHH
Q psy13409 240 TNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSII---PGTAWLYQR------------VGGLFIKSPLQGAQ 304 (330)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~---~~~~~~~~~------------~~~~~~~~~~e~a~ 304 (330)
.|++++.|.||.|-++......... .....+... -....+..++|+|+
T Consensus 245 -----------------~g~~~~ivRpg~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~DvA~ 307 (427)
T 4f6c_A 245 -----------------NGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGVSMAEMPVDFSFVDTTAR 307 (427)
T ss_dssp -----------------TTCCEEEEEECCEESCSSSCCCCTTGGGCHHHHHHHHHHHSSEEEHHHHTCEECCEEHHHHHH
T ss_pred -----------------cCCCEEEEeCCeeecCCCCCccccCcchHHHHHHHHHHHhcCCCCCccccceEEEeeHHHHHH
Confidence 4799999999999887654331111 001111110 11122567899999
Q ss_pred HHHHhhccccccccCceeccc
Q psy13409 305 TTLYCALDKKCERETGLYYAK 325 (330)
Q Consensus 305 ~~~~l~~~~~~~~~~G~~~~~ 325 (330)
++++++..+. .|..|+-
T Consensus 308 ai~~~~~~~~----~g~~~~l 324 (427)
T 4f6c_A 308 QIVALAQVNT----PQIIYHV 324 (427)
T ss_dssp HHHHHTTSCC----CCSEEEE
T ss_pred HHHHHHcCCC----CCCEEEe
Confidence 9999986542 5666544
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.2e-19 Score=167.65 Aligned_cols=228 Identities=12% Similarity=0.046 Sum_probs=155.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHC---C---CEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKR---G---ARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~---G---~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
+++|||||+|+||++++++|+++ | ++|++++|+..... .+.+.. .....++.++.+|+++.+++++++
T Consensus 1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~--~~~~~~----~~~~~~~~~~~~Dl~d~~~~~~~~ 74 (337)
T 1r6d_A 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGN--RANLAP----VDADPRLRFVHGDIRDAGLLAREL 74 (337)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCC--GGGGGG----GTTCTTEEEEECCTTCHHHHHHHT
T ss_pred CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCc--hhhhhh----cccCCCeEEEEcCCCCHHHHHHHh
Confidence 36999999999999999999997 8 99999998642100 000111 012457889999999998887765
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 91 QEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
..+|++||+||.... ..+.++++..+++|+.++.++++++.+. +.++||++||.+. ++... ..+
T Consensus 75 -------~~~d~Vih~A~~~~~--~~~~~~~~~~~~~Nv~~~~~l~~a~~~~----~~~~~v~~SS~~v-yg~~~--~~~ 138 (337)
T 1r6d_A 75 -------RGVDAIVHFAAESHV--DRSIAGASVFTETNVQGTQTLLQCAVDA----GVGRVVHVSTNQV-YGSID--SGS 138 (337)
T ss_dssp -------TTCCEEEECCSCCCH--HHHHHCCHHHHHHHTHHHHHHHHHHHHT----TCCEEEEEEEGGG-GCCCS--SSC
T ss_pred -------cCCCEEEECCCccCc--hhhhhCHHHHHHHHHHHHHHHHHHHHHc----CCCEEEEecchHH-hCCCC--CCC
Confidence 468999999997532 1233566788999999999998887653 4579999999754 33211 123
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
++...+..+...|+.+|++.+.+++.++.++
T Consensus 139 ~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~------------------------------------------------- 169 (337)
T 1r6d_A 139 WTESSPLEPNSPYAASKAGSDLVARAYHRTY------------------------------------------------- 169 (337)
T ss_dssp BCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH-------------------------------------------------
T ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHHHH-------------------------------------------------
Confidence 4444455667899999999999999988753
Q ss_pred CCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHH--Hh---h----hhhccChHHHHHHHHHhhccccccccCce
Q psy13409 251 PPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQ--RV---G----GLFIKSPLQGAQTTLYCALDKKCERETGL 321 (330)
Q Consensus 251 ~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~--~~---~----~~~~~~~~e~a~~~~~l~~~~~~~~~~G~ 321 (330)
+++++.|.||.|.++................. ++ + ...+..++|+|+++++++..+ .+|+
T Consensus 170 -------g~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~----~~g~ 238 (337)
T 1r6d_A 170 -------GLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAGG----RAGE 238 (337)
T ss_dssp -------CCCEEEEEECEEECTTCCTTSHHHHHHHHHHTTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHHC----CTTC
T ss_pred -------CCCEEEEEeeeeECCCCCCCChHHHHHHHHhcCCCcEEeCCCCeeEeeEeHHHHHHHHHHHHhCC----CCCC
Confidence 58899999999988864321000011111110 00 1 012557899999999998543 2566
Q ss_pred ecccC
Q psy13409 322 YYAKA 326 (330)
Q Consensus 322 ~~~~~ 326 (330)
.|+-.
T Consensus 239 ~~~v~ 243 (337)
T 1r6d_A 239 IYHIG 243 (337)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 66544
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-18 Score=165.61 Aligned_cols=174 Identities=15% Similarity=0.106 Sum_probs=124.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHH-HHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAE-TAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~-~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
+|++|||||+|+||++++++|+++|++|++++|+.+... +..+.+..... ..+.++.++.+|+++.++++++++.+
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~d~~~~~~~~~~~- 77 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPH--TCNPKFHLHYGDLSDTSNLTRILREV- 77 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC-----------------------CCEEECCCCSSCHHHHHHHHHHH-
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccchHHHHHHhhccc--cCCCceEEEECCCCCHHHHHHHHHhc-
Confidence 478999999999999999999999999999999865421 11111111000 01357889999999999999988765
Q ss_pred hcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccc
Q psy13409 95 DNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLE 174 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~ 174 (330)
++|++|||||.... ..+.++++..+++|+.++.++++++.+...+ +.++||++||.+. ++... ..+++..
T Consensus 78 ----~~d~vih~A~~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~~iv~~SS~~v-~g~~~--~~~~~E~ 147 (372)
T 1db3_A 78 ----QPDEVYNLGAMSHV--AVSFESPEYTADVDAMGTLRLLEAIRFLGLE-KKTRFYQASTSEL-YGLVQ--EIPQKET 147 (372)
T ss_dssp ----CCSEEEECCCCCTT--TTTTSCHHHHHHHHTHHHHHHHHHHHHTTCT-TTCEEEEEEEGGG-GTTCC--SSSBCTT
T ss_pred ----CCCEEEECCcccCc--cccccCHHHHHHHHHHHHHHHHHHHHHhCCC-CCcEEEEeCChhh-hCCCC--CCCCCcc
Confidence 68999999997543 2345667888999999999999988765432 2389999999754 33211 1234444
Q ss_pred cCCCcchhhHHhHHHHHHHHHHHHHHhc
Q psy13409 175 KGYSATGAYGRSKLANILFTTELAKRLQ 202 (330)
Q Consensus 175 ~~~~~~~~Y~asK~a~~~~~~~la~~~~ 202 (330)
.+..+...|+.+|++.+.+++.++.+++
T Consensus 148 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~~ 175 (372)
T 1db3_A 148 TPFYPRSPYAVAKLYAYWITVNYRESYG 175 (372)
T ss_dssp SCCCCCSHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHhC
Confidence 4556678999999999999999998765
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=9.4e-19 Score=167.93 Aligned_cols=220 Identities=13% Similarity=0.027 Sum_probs=153.0
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
..++|++|||||+|+||++++++|+++|++|++++|+....... ...++.++.+|+++.++++++++
T Consensus 26 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~------------~~~~v~~~~~Dl~d~~~~~~~~~- 92 (379)
T 2c5a_A 26 PSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTE------------DMFCDEFHLVDLRVMENCLKVTE- 92 (379)
T ss_dssp TTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCG------------GGTCSEEEECCTTSHHHHHHHHT-
T ss_pred cccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhh------------ccCCceEEECCCCCHHHHHHHhC-
Confidence 34678999999999999999999999999999999986532110 12357889999999998887764
Q ss_pred HHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCC---ccc
Q psy13409 93 ILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSM---HFE 169 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~---~~~ 169 (330)
.+|++||+||..... ....++++..+++|+.++.++++++.+ .+.++||++||... ++.... ...
T Consensus 93 ------~~d~Vih~A~~~~~~-~~~~~~~~~~~~~Nv~g~~~ll~a~~~----~~~~~~V~~SS~~v-~~~~~~~~~~~~ 160 (379)
T 2c5a_A 93 ------GVDHVFNLAADMGGM-GFIQSNHSVIMYNNTMISFNMIEAARI----NGIKRFFYASSACI-YPEFKQLETTNV 160 (379)
T ss_dssp ------TCSEEEECCCCCCCH-HHHTTCHHHHHHHHHHHHHHHHHHHHH----TTCSEEEEEEEGGG-SCGGGSSSSSSC
T ss_pred ------CCCEEEECceecCcc-cccccCHHHHHHHHHHHHHHHHHHHHH----cCCCEEEEEeehhe-eCCCCCCCccCC
Confidence 589999999975321 111456788899999999888887743 34579999999653 332110 001
Q ss_pred cccccc--CCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 170 DINLEK--GYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 170 ~~~~~~--~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
+++... +..+...|+.+|++.+.+++.++.+
T Consensus 161 ~~~E~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~----------------------------------------------- 193 (379)
T 2c5a_A 161 SLKESDAWPAEPQDAFGLEKLATEELCKHYNKD----------------------------------------------- 193 (379)
T ss_dssp EECGGGGSSBCCSSHHHHHHHHHHHHHHHHHHH-----------------------------------------------
T ss_pred CcCcccCCCCCCCChhHHHHHHHHHHHHHHHHH-----------------------------------------------
Confidence 122222 3345678999999999999998865
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHh--h------------hhhccChHHHHHHHHHhhccc
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRV--G------------GLFIKSPLQGAQTTLYCALDK 313 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~--~------------~~~~~~~~e~a~~~~~l~~~~ 313 (330)
.|++++.|.||.|.++..............+...+ + ...+..++|+|+++++++..+
T Consensus 194 ---------~gi~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~ai~~~l~~~ 264 (379)
T 2c5a_A 194 ---------FGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSD 264 (379)
T ss_dssp ---------HCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHHHHHHHHHHHHSS
T ss_pred ---------HCCCEEEEEeCceeCcCCCcccccccHHHHHHHHHHhCCCceEEeCCCCeeEEEEEHHHHHHHHHHHhhcc
Confidence 36899999999998886433211100111111111 1 112456999999999998653
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.81 E-value=4.7e-19 Score=164.95 Aligned_cols=220 Identities=15% Similarity=0.118 Sum_probs=151.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
|++|||||+|+||++++++|+++|..|++..|+....+. ....+.++.+|+++ +++.++++
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g~~v~~~~~~~~~~~~-------------~~~~~~~~~~Dl~~-~~~~~~~~----- 62 (313)
T 3ehe_A 2 SLIVVTGGAGFIGSHVVDKLSESNEIVVIDNLSSGNEEF-------------VNEAARLVKADLAA-DDIKDYLK----- 62 (313)
T ss_dssp -CEEEETTTSHHHHHHHHHHTTTSCEEEECCCSSCCGGG-------------SCTTEEEECCCTTT-SCCHHHHT-----
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCEEEEEcCCCCChhh-------------cCCCcEEEECcCCh-HHHHHHhc-----
Confidence 579999999999999999999999555554444332111 24568899999999 87777664
Q ss_pred CCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccccC
Q psy13409 97 ESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKG 176 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~ 176 (330)
.+|++||+|+... ...+.++++..+++|+.++.++++++ .+.+.++||++||... ++.. ...+++...+
T Consensus 63 --~~d~vih~a~~~~--~~~~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~v-yg~~--~~~~~~E~~~ 131 (313)
T 3ehe_A 63 --GAEEVWHIAANPD--VRIGAENPDEIYRNNVLATYRLLEAM----RKAGVSRIVFTSTSTV-YGEA--KVIPTPEDYP 131 (313)
T ss_dssp --TCSEEEECCCCCC--CC-CCCCHHHHHHHHHHHHHHHHHHH----HHHTCCEEEEECCGGG-GCSC--SSSSBCTTSC
T ss_pred --CCCEEEECCCCCC--hhhhhhCHHHHHHHHHHHHHHHHHHH----HHcCCCeEEEeCchHH-hCcC--CCCCCCCCCC
Confidence 5899999999542 24456778899999999988888774 3455689999999654 4321 1234444456
Q ss_pred CCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCCCCC
Q psy13409 177 YSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGANI 256 (330)
Q Consensus 177 ~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (330)
..+...|+.+|++.+.+++.++.+
T Consensus 132 ~~~~~~Y~~sK~~~e~~~~~~~~~-------------------------------------------------------- 155 (313)
T 3ehe_A 132 THPISLYGASKLACEALIESYCHT-------------------------------------------------------- 155 (313)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHH--------------------------------------------------------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHh--------------------------------------------------------
Confidence 667789999999999999999876
Q ss_pred CceeEEEeeCcccccCcccccCCCchhhHHHHHH------hh----hhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 257 TNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQR------VG----GLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 257 ~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
.|++++.+.|+.|-++...... ........... .+ ...+..++|+|+++++++... ..|..|+-.
T Consensus 156 ~g~~~~ilRp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~----~~~~~~ni~ 230 (313)
T 3ehe_A 156 FDMQAWIYRFANVIGRRSTHGV-IYDFIMKLKRNPEELEILGNGEQNKSYIYISDCVDAMLFGLRGD----ERVNIFNIG 230 (313)
T ss_dssp TTCEEEEEECSCEESTTCCCSH-HHHHHHHHHHCTTEEEESTTSCCEECCEEHHHHHHHHHHHTTCC----SSEEEEECC
T ss_pred cCCCEEEEeeccccCcCCCcCh-HHHHHHHHHcCCCceEEeCCCCeEEeEEEHHHHHHHHHHHhccC----CCCceEEEC
Confidence 4689999999999887543200 00111111100 01 112556899999999998632 245666544
Q ss_pred C
Q psy13409 327 D 327 (330)
Q Consensus 327 ~ 327 (330)
.
T Consensus 231 ~ 231 (313)
T 3ehe_A 231 S 231 (313)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.6e-19 Score=166.49 Aligned_cols=167 Identities=15% Similarity=0.179 Sum_probs=122.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhH------HHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEK------AETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~------l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
+|++|||||+|+||++++++|+++|++|++++|+... ..+..+.+... .+.++.++.+|+++.++++++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~~D~~~~~~~~~~ 76 (348)
T 1ek6_A 2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQEL-----TGRSVEFEEMDILDQGALQRL 76 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHH-----HTCCCEEEECCTTCHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhc-----cCCceEEEECCCCCHHHHHHH
Confidence 5899999999999999999999999999999886432 12223333321 135678899999999998888
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 90 AQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
++.. .+|++||+||..... .+.++++..+++|+.++.++++++ .+.+.++||++||... ++.. ...
T Consensus 77 ~~~~-----~~d~vih~A~~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~iv~~SS~~~-~g~~--~~~ 142 (348)
T 1ek6_A 77 FKKY-----SFMAVIHFAGLKAVG--ESVQKPLDYYRVNLTGTIQLLEIM----KAHGVKNLVFSSSATV-YGNP--QYL 142 (348)
T ss_dssp HHHC-----CEEEEEECCSCCCHH--HHHHCHHHHHHHHHHHHHHHHHHH----HHTTCCEEEEEEEGGG-GCSC--SSS
T ss_pred HHhc-----CCCEEEECCCCcCcc--chhhchHHHHHHHHHHHHHHHHHH----HHhCCCEEEEECcHHH-hCCC--CCC
Confidence 7652 689999999975321 134567788999999988888764 3345589999999654 4421 112
Q ss_pred ccccccCCCc-chhhHHhHHHHHHHHHHHHHHhc
Q psy13409 170 DINLEKGYSA-TGAYGRSKLANILFTTELAKRLQ 202 (330)
Q Consensus 170 ~~~~~~~~~~-~~~Y~asK~a~~~~~~~la~~~~ 202 (330)
++++..+..+ ...|+.+|++.+.+++.++.+ +
T Consensus 143 ~~~E~~~~~p~~~~Y~~sK~~~e~~~~~~~~~-~ 175 (348)
T 1ek6_A 143 PLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQA-D 175 (348)
T ss_dssp SBCTTSCCCCCSSHHHHHHHHHHHHHHHHHHH-C
T ss_pred CcCCCCCCCCCCCchHHHHHHHHHHHHHHHhc-C
Confidence 3333333333 678999999999999999887 5
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-19 Score=209.25 Aligned_cols=160 Identities=19% Similarity=0.164 Sum_probs=127.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCE-EEEEecChhHH---HHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGAR-VIMACRSLEKA---ETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~-Vil~~R~~~~l---~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.+|++|||||++|||+++++.|+++|++ |++++|+..+. .+..+++.. .+.++.++.||+++.+++++++
T Consensus 1883 ~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~------~g~~v~~~~~Dvsd~~~v~~~~ 1956 (2512)
T 2vz8_A 1883 PHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRR------QGVQVLVSTSNASSLDGARSLI 1956 (2512)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCCEEEEECSSCCCSHHHHHHHHHHHH------TTCEEEEECCCSSSHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEeCCCcchHHHHHHHHHHHh------CCCEEEEEecCCCCHHHHHHHH
Confidence 6899999999999999999999999996 88899986443 334444443 3678999999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 91 QEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
+++.+ ++++|++|||||+... ..+++.++|++.+++|+.|++++.+.+.+.|.+. |+||++||.++..+.
T Consensus 1957 ~~~~~-~g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~--g~iV~iSS~ag~~g~----- 2028 (2512)
T 2vz8_A 1957 TEATQ-LGPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPEL--DYFVIFSSVSCGRGN----- 2028 (2512)
T ss_dssp HHHHH-HSCEEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCTTC--CEEEEECCHHHHTTC-----
T ss_pred HHHHh-cCCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccC--CEEEEecchhhcCCC-----
Confidence 99874 7899999999998653 3678999999999999999999999999987543 899999999998885
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHH
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTEL 197 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~l 197 (330)
++...|++||+++++|++.+
T Consensus 2029 ---------~g~~~Y~aaKaal~~l~~~r 2048 (2512)
T 2vz8_A 2029 ---------AGQANYGFANSAMERICEKR 2048 (2512)
T ss_dssp ---------TTCHHHHHHHHHHHHHHHHH
T ss_pred ---------CCcHHHHHHHHHHHHHHHHH
Confidence 78899999999999999943
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-19 Score=168.95 Aligned_cols=228 Identities=15% Similarity=0.087 Sum_probs=145.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHH--HHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAA--DDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~--~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
+|++|||||+|+||++++++|+++|++|+++.|+.+...+.. ..+. ...++.++.+|+++.++++++++
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~~Dl~d~~~~~~~~~-- 79 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQ-------ELGDLKIFRADLTDELSFEAPIA-- 79 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHG-------GGSCEEEEECCTTTSSSSHHHHT--
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcC-------CCCcEEEEecCCCChHHHHHHHc--
Confidence 789999999999999999999999999999999865322111 1121 13468889999999988877764
Q ss_pred HhcCCCeeEEEEcCCCCCCCCCCChhh-HHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCc-cccc
Q psy13409 94 LDNESAIHLLINNAGVMMCPRQLTEDG-YELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMH-FEDI 171 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~~~~~~~~~-~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~-~~~~ 171 (330)
.+|++||+|+.... ...+ .++.+++|+.+++++++++.+.. +.++||++||.++..+.+... ..++
T Consensus 80 -----~~D~Vih~A~~~~~----~~~~~~~~~~~~nv~gt~~ll~aa~~~~---~v~r~V~~SS~~~~~~~~~~~~~~~~ 147 (338)
T 2rh8_A 80 -----GCDFVFHVATPVHF----ASEDPENDMIKPAIQGVVNVMKACTRAK---SVKRVILTSSAAAVTINQLDGTGLVV 147 (338)
T ss_dssp -----TCSEEEEESSCCCC-------------CHHHHHHHHHHHHHHHHCT---TCCEEEEECCHHHHHHHHHTCSCCCC
T ss_pred -----CCCEEEEeCCccCC----CCCCcHHHHHHHHHHHHHHHHHHHHHcC---CcCEEEEEecHHHeecCCcCCCCccc
Confidence 36999999986521 1122 24588999999999988876521 257999999976443211000 0012
Q ss_pred cccc--------CCC-cchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcc
Q psy13409 172 NLEK--------GYS-ATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNH 242 (330)
Q Consensus 172 ~~~~--------~~~-~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (330)
++.. +.. ....|+.||++.+.+++.++.+
T Consensus 148 ~E~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~------------------------------------------ 185 (338)
T 2rh8_A 148 DEKNWTDIEFLTSAKPPTWGYPASKTLAEKAAWKFAEE------------------------------------------ 185 (338)
T ss_dssp CTTTTTCC-------CCCCCCTTSCCHHHHHHHHHHHH------------------------------------------
T ss_pred ChhhccchhhccccCCccchHHHHHHHHHHHHHHHHHH------------------------------------------
Confidence 2111 101 1126999999988888777643
Q ss_pred cccccccCCCCCCCCceeEEEeeCcccccCcccccCCCc-hhh-------HHHHH-------HhhhhhccChHHHHHHHH
Q psy13409 243 YCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSII-PGT-------AWLYQ-------RVGGLFIKSPLQGAQTTL 307 (330)
Q Consensus 243 ~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~-~~~-------~~~~~-------~~~~~~~~~~~e~a~~~~ 307 (330)
.|+++++|.||.|.++......... ... ..... +.+...+..++|+|++++
T Consensus 186 --------------~gi~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~ 251 (338)
T 2rh8_A 186 --------------NNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEFLINGMKGMQMLSGSVSIAHVEDVCRAHI 251 (338)
T ss_dssp --------------HTCCEEEEEECEEESCCSSSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHSSEEEEEHHHHHHHHH
T ss_pred --------------cCCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCccccccccccccccCcccEEEHHHHHHHHH
Confidence 4789999999999998654321110 000 00000 001113789999999999
Q ss_pred HhhccccccccCceec
Q psy13409 308 YCALDKKCERETGLYY 323 (330)
Q Consensus 308 ~l~~~~~~~~~~G~~~ 323 (330)
+++..+. ..|.|+
T Consensus 252 ~~~~~~~---~~~~~~ 264 (338)
T 2rh8_A 252 FVAEKES---ASGRYI 264 (338)
T ss_dssp HHHHCTT---CCEEEE
T ss_pred HHHcCCC---cCCcEE
Confidence 9986532 245544
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.80 E-value=9.5e-19 Score=167.07 Aligned_cols=170 Identities=14% Similarity=0.087 Sum_probs=124.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhH-----HHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEK-----AETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~-----l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
|++|||||+|+||++++++|+++|++|++++|+... ++.+.+.+... ...++.++.+|++|.+++.++++
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~Dl~d~~~~~~~~~ 99 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAH-----IEGNMKLHYGDLTDSTCLVKIIN 99 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC--------------CEEEEECCTTCHHHHHHHHH
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEECCccccchhhHHHHhhhhccc-----cCCCceEEEccCCCHHHHHHHHH
Confidence 789999999999999999999999999999998542 11111110000 13468899999999999998887
Q ss_pred HHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccc
Q psy13409 92 EILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDI 171 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~ 171 (330)
.+ ++|++|||||.... ..+.++++..+++|+.++.++++++.+... ++.++||++||....... . ..++
T Consensus 100 ~~-----~~d~vih~A~~~~~--~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~-~~~~~iv~~SS~~~~~~~-~--~~~~ 168 (375)
T 1t2a_A 100 EV-----KPTEIYNLGAQSHV--KISFDLAEYTADVDGVGTLRLLDAVKTCGL-INSVKFYQASTSELYGKV-Q--EIPQ 168 (375)
T ss_dssp HH-----CCSEEEECCSCCCH--HHHHHSHHHHHHHHTHHHHHHHHHHHHTTC-TTTCEEEEEEEGGGTCSC-S--SSSB
T ss_pred hc-----CCCEEEECCCcccc--cccccCHHHHHHHHHHHHHHHHHHHHHhCC-CccceEEEecchhhhCCC-C--CCCC
Confidence 65 68999999997532 123466788899999999999998876443 123799999997653321 1 1234
Q ss_pred ccccCCCcchhhHHhHHHHHHHHHHHHHHhc
Q psy13409 172 NLEKGYSATGAYGRSKLANILFTTELAKRLQ 202 (330)
Q Consensus 172 ~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~ 202 (330)
+...+..+...|+.+|++.+.+++.++.+++
T Consensus 169 ~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~ 199 (375)
T 1t2a_A 169 KETTPFYPRSPYGAAKLYAYWIVVNFREAYN 199 (375)
T ss_dssp CTTSCCCCCSHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccCCCCCCChhHHHHHHHHHHHHHHHHHhC
Confidence 4444555677999999999999999988754
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=6.1e-19 Score=169.01 Aligned_cols=162 Identities=14% Similarity=0.143 Sum_probs=115.9
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCC-CEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRG-ARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G-~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
.++++++|||||+|+||++++++|+++| ++|++++|+.....+ .+ ....++.++.+|+++.++++++++
T Consensus 29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~---~l-------~~~~~v~~~~~Dl~d~~~l~~~~~ 98 (377)
T 2q1s_A 29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKI---NV-------PDHPAVRFSETSITDDALLASLQD 98 (377)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGG---GS-------CCCTTEEEECSCTTCHHHHHHCCS
T ss_pred HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchh---hc-------cCCCceEEEECCCCCHHHHHHHhh
Confidence 4788999999999999999999999999 999999998653211 00 014578899999999887765543
Q ss_pred HHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhh-CCCeEEEEcCCCcccCCCCCcccc
Q psy13409 92 EILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKS-APARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~-~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
.+|++||+||.... ..+.++++..+++|+.++.++++++ .+. +.+++|++||... ++... ..+
T Consensus 99 -------~~d~Vih~A~~~~~--~~~~~~~~~~~~~nv~~~~~ll~a~----~~~~~~~~~V~~SS~~v-yg~~~--~~~ 162 (377)
T 2q1s_A 99 -------EYDYVFHLATYHGN--QSSIHDPLADHENNTLTTLKLYERL----KHFKRLKKVVYSAAGCS-IAEKT--FDD 162 (377)
T ss_dssp -------CCSEEEECCCCSCH--HHHHHCHHHHHHHHTHHHHHHHHHH----TTCSSCCEEEEEEEC-------------
T ss_pred -------CCCEEEECCCccCc--hhhhhCHHHHHHHHHHHHHHHHHHH----HHhCCCCeEEEeCCHHH-cCCCC--CCC
Confidence 68999999997532 1234567888999999988887766 334 4579999999653 33211 112
Q ss_pred cc--ccc---CC-CcchhhHHhHHHHHHHHHHHHHH
Q psy13409 171 IN--LEK---GY-SATGAYGRSKLANILFTTELAKR 200 (330)
Q Consensus 171 ~~--~~~---~~-~~~~~Y~asK~a~~~~~~~la~~ 200 (330)
++ ... +. .+...|+.+|++.+.+++.++.+
T Consensus 163 ~~~~E~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~ 198 (377)
T 2q1s_A 163 AKATEETDIVSLHNNDSPYSMSKIFGEFYSVYYHKQ 198 (377)
T ss_dssp ----CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred cCcccccccccccCCCCchHHHHHHHHHHHHHHHHH
Confidence 22 222 22 45678999999999999998865
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.1e-19 Score=167.86 Aligned_cols=219 Identities=13% Similarity=0.060 Sum_probs=148.8
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCC-CEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRG-ARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G-~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.++++|++|||||+|+||.+++++|+++| ++|++++|+..... .+.+ . .+. +.+|+++.++++.++
T Consensus 42 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~--------~--~~~-~~~d~~~~~~~~~~~ 108 (357)
T 2x6t_A 42 SGIEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK--FVNL--------V--DLN-IADYMDKEDFLIQIM 108 (357)
T ss_dssp ------CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGG--GGGT--------T--TSC-CSEEEEHHHHHHHHH
T ss_pred ccCCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcch--hhcc--------c--Cce-EeeecCcHHHHHHHH
Confidence 34678999999999999999999999999 89999999865321 0000 1 122 678999988887776
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 91 QEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
+. ..++.+|++||+||.... +.++++..+++|+.++.++++++.+ .+. ++|++||... ++... ..+
T Consensus 109 ~~--~~~~~~d~Vih~A~~~~~----~~~~~~~~~~~n~~~~~~ll~a~~~----~~~-r~V~~SS~~v-~g~~~--~~~ 174 (357)
T 2x6t_A 109 AG--EEFGDVEAIFHEGACSST----TEWDGKYMMDNNYQYSKELLHYCLE----REI-PFLYASSAAT-YGGRT--SDF 174 (357)
T ss_dssp TT--CCCSSCCEEEECCSCCCT----TCCCHHHHHHHTHHHHHHHHHHHHH----HTC-CEEEEEEGGG-GCSCS--SCC
T ss_pred hh--cccCCCCEEEECCcccCC----ccCCHHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEcchHH-hCCCC--CCC
Confidence 53 235679999999997643 3456788899999999998888765 344 9999999764 33211 123
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
+++..+..+...|+.+|++.+.+++.++.+
T Consensus 175 ~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~-------------------------------------------------- 204 (357)
T 2x6t_A 175 IESREYEKPLNVFGYSKFLFDEYVRQILPE-------------------------------------------------- 204 (357)
T ss_dssp CSSGGGCCCSSHHHHHHHHHHHHHHHHGGG--------------------------------------------------
T ss_pred cCCcCCCCCCChhHHHHHHHHHHHHHHHHH--------------------------------------------------
Confidence 444445556779999999999999887643
Q ss_pred CCCCCCCceeEEEeeCcccccCcccccCCCchhhHHH----HH--H---h--h---hhhccChHHHHHHHHHhhccc
Q psy13409 251 PPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWL----YQ--R---V--G---GLFIKSPLQGAQTTLYCALDK 313 (330)
Q Consensus 251 ~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~----~~--~---~--~---~~~~~~~~e~a~~~~~l~~~~ 313 (330)
.|++++.|.||.|-++..............+ .. . . + ...+..++|+|+++++++..+
T Consensus 205 ------~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~ai~~~~~~~ 275 (357)
T 2x6t_A 205 ------ANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENG 275 (357)
T ss_dssp ------CSSCEEEEEECEEESSSCTTCGGGSCHHHHHHHHHHTTCCCEEETTGGGCEECEEEHHHHHHHHHHHHHHC
T ss_pred ------cCCCEEEEecCeEECCCCCCCcccchHHHHHHHHHHcCCCcEEeCCCCcceEccEEHHHHHHHHHHHHhcC
Confidence 4789999999999877533110000011111 10 0 1 1 123578999999999998654
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.8e-18 Score=165.47 Aligned_cols=169 Identities=16% Similarity=0.108 Sum_probs=128.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhH-----HHHHHHHHHHhhcccCCCC-eEEEEEccCCCHHHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEK-----AETAADDIRTSLKDVKDAG-EVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~-----l~~~~~~l~~~~~~~~~~~-~v~~i~~Dls~~~si~~l~ 90 (330)
|++|||||+|+||.+++++|+++|++|++++|+.+. ++...+.+.. .+. ++.++.+|+++.+++.+++
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~Dl~d~~~~~~~~ 102 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHN------VNKALMKLHYADLTDASSLRRWI 102 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------------CCEEEEECCTTCHHHHHHHH
T ss_pred CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCccccchhhhhhhhcccc------ccccceEEEECCCCCHHHHHHHH
Confidence 789999999999999999999999999999998653 2111111100 122 6889999999999999888
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCCccc
Q psy13409 91 QEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
+.+ ++|+|||+||.... ..+.++++..+++|+.++.++++++.+...+++ .++||++||... ++....
T Consensus 103 ~~~-----~~d~Vih~A~~~~~--~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS~~v-yg~~~~--- 171 (381)
T 1n7h_A 103 DVI-----KPDEVYNLAAQSHV--AVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEM-FGSTPP--- 171 (381)
T ss_dssp HHH-----CCSEEEECCSCCCH--HHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGG-GTTSCS---
T ss_pred Hhc-----CCCEEEECCcccCc--cccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCcHHH-hCCCCC---
Confidence 765 68999999997532 123467788999999999999999998765532 469999999754 332111
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQ 202 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~ 202 (330)
+++...+..+...|+.+|++.+.+++.++.+++
T Consensus 172 ~~~E~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~ 204 (381)
T 1n7h_A 172 PQSETTPFHPRSPYAASKCAAHWYTVNYREAYG 204 (381)
T ss_dssp SBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhC
Confidence 444445556778999999999999999998865
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1e-19 Score=169.38 Aligned_cols=147 Identities=16% Similarity=0.110 Sum_probs=90.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
+|++|||||+|+||++++++|+++|++|++++|+.+. . + ++.+|+++.++++++++..
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-----------------~-~--~~~~Dl~d~~~~~~~~~~~-- 59 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRAR-----------------P-K--FEQVNLLDSNAVHHIIHDF-- 59 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC--------------------------------------CHHHHHHH--
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCC-----------------C-C--eEEecCCCHHHHHHHHHhh--
Confidence 6899999999999999999999999999999987532 0 1 5789999999988888765
Q ss_pred cCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccccccc
Q psy13409 96 NESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEK 175 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~ 175 (330)
++|++||+||.... ..+.++++..+++|+.++.++++++.+ .+ +++|++||.....+. ..+++...
T Consensus 60 ---~~d~vih~A~~~~~--~~~~~~~~~~~~~n~~~~~~l~~a~~~----~~-~~~v~~SS~~v~~~~----~~~~~E~~ 125 (315)
T 2ydy_A 60 ---QPHVIVHCAAERRP--DVVENQPDAASQLNVDASGNLAKEAAA----VG-AFLIYISSDYVFDGT----NPPYREED 125 (315)
T ss_dssp ---CCSEEEECC---------------------CHHHHHHHHHHHH----HT-CEEEEEEEGGGSCSS----SCSBCTTS
T ss_pred ---CCCEEEECCcccCh--hhhhcCHHHHHHHHHHHHHHHHHHHHH----cC-CeEEEEchHHHcCCC----CCCCCCCC
Confidence 68999999997542 224567788999999999999988865 23 599999997653331 22344444
Q ss_pred CCCcchhhHHhHHHHHHHHHHHH
Q psy13409 176 GYSATGAYGRSKLANILFTTELA 198 (330)
Q Consensus 176 ~~~~~~~Y~asK~a~~~~~~~la 198 (330)
+..+...|+.+|++.+.+++.++
T Consensus 126 ~~~~~~~Y~~sK~~~e~~~~~~~ 148 (315)
T 2ydy_A 126 IPAPLNLYGKTKLDGEKAVLENN 148 (315)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHC
T ss_pred CCCCcCHHHHHHHHHHHHHHHhC
Confidence 45667899999999999998874
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.79 E-value=6e-18 Score=158.25 Aligned_cols=158 Identities=16% Similarity=0.163 Sum_probs=120.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
|++|||||+|+||++++++|+++|++|++++|+..... +. ...++.++.+|+++.+++++++++
T Consensus 2 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-------~~-----~~~~~~~~~~D~~~~~~~~~~~~~---- 65 (330)
T 2c20_A 2 NSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHE-------DA-----ITEGAKFYNGDLRDKAFLRDVFTQ---- 65 (330)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCG-------GG-----SCTTSEEEECCTTCHHHHHHHHHH----
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCch-------hh-----cCCCcEEEECCCCCHHHHHHHHhh----
Confidence 58999999999999999999999999999998754321 01 123678899999999998888765
Q ss_pred CCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccccC
Q psy13409 97 ESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKG 176 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~ 176 (330)
..+|++||+||..... .+.++++..+++|+.++.++++++. +.+.+++|++||... ++.. ...++++..+
T Consensus 66 -~~~d~vih~a~~~~~~--~~~~~~~~~~~~n~~~~~~l~~a~~----~~~~~~~v~~Ss~~~-~~~~--~~~~~~E~~~ 135 (330)
T 2c20_A 66 -ENIEAVMHFAADSLVG--VSMEKPLQYYNNNVYGALCLLEVMD----EFKVDKFIFSSTAAT-YGEV--DVDLITEETM 135 (330)
T ss_dssp -SCEEEEEECCCCCCHH--HHHHSHHHHHHHHHHHHHHHHHHHH----HTTCCEEEEECCGGG-GCSC--SSSSBCTTSC
T ss_pred -cCCCEEEECCcccCcc--ccccCHHHHHHHHhHHHHHHHHHHH----HcCCCEEEEeCCcee-eCCC--CCCCCCcCCC
Confidence 3699999999975321 1345678889999999888887753 344579999999654 4422 1233444455
Q ss_pred CCcchhhHHhHHHHHHHHHHHHHH
Q psy13409 177 YSATGAYGRSKLANILFTTELAKR 200 (330)
Q Consensus 177 ~~~~~~Y~asK~a~~~~~~~la~~ 200 (330)
..+...|+.+|++.+.+++.++.+
T Consensus 136 ~~~~~~Y~~sK~~~e~~~~~~~~~ 159 (330)
T 2c20_A 136 TNPTNTYGETKLAIEKMLHWYSQA 159 (330)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCChHHHHHHHHHHHHHHHHHH
Confidence 566789999999999999988763
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=5e-18 Score=159.15 Aligned_cols=170 Identities=16% Similarity=0.106 Sum_probs=124.0
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
.-.++++|||||+|+||++++++|+++|++|++++|+...... ..+... ....++.++.+|+++.++++++++.
T Consensus 11 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~----~~~~~~~~~~~Dl~d~~~~~~~~~~ 84 (335)
T 1rpn_A 11 GSMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTR--WRLREL----GIEGDIQYEDGDMADACSVQRAVIK 84 (335)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCC--HHHHHT----TCGGGEEEEECCTTCHHHHHHHHHH
T ss_pred cccCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccc--cchhhc----cccCceEEEECCCCCHHHHHHHHHH
Confidence 4578999999999999999999999999999999998653110 011110 0135688999999999999988876
Q ss_pred HHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCCccccc
Q psy13409 93 ILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSMHFEDI 171 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~~~~~~ 171 (330)
+ ++|++||+||.... ..+.++++..+++|+.++.++++++.+ .+ .+++|++||... ++... ..++
T Consensus 85 ~-----~~d~Vih~A~~~~~--~~~~~~~~~~~~~n~~~~~~l~~a~~~----~~~~~~~v~~SS~~v-~g~~~--~~~~ 150 (335)
T 1rpn_A 85 A-----QPQEVYNLAAQSFV--GASWNQPVTTGVVDGLGVTHLLEAIRQ----FSPETRFYQASTSEM-FGLIQ--AERQ 150 (335)
T ss_dssp H-----CCSEEEECCSCCCH--HHHTTSHHHHHHHHTHHHHHHHHHHHH----HCTTSEEEEEEEGGG-GCSCS--SSSB
T ss_pred c-----CCCEEEECccccch--hhhhhChHHHHHHHHHHHHHHHHHHHH----hCCCCeEEEEeCHHH-hCCCC--CCCC
Confidence 5 68999999996532 112356778899999999888887754 34 379999999654 43211 1234
Q ss_pred ccccCCCcchhhHHhHHHHHHHHHHHHHHhc
Q psy13409 172 NLEKGYSATGAYGRSKLANILFTTELAKRLQ 202 (330)
Q Consensus 172 ~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~ 202 (330)
+...+..+...|+.+|++.+.+++.++.+++
T Consensus 151 ~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~~ 181 (335)
T 1rpn_A 151 DENTPFYPRSPYGVAKLYGHWITVNYRESFG 181 (335)
T ss_dssp CTTSCCCCCSHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcccCCCCCChhHHHHHHHHHHHHHHHHHcC
Confidence 4444555677899999999999999987653
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-17 Score=155.36 Aligned_cols=215 Identities=14% Similarity=0.099 Sum_probs=150.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
+|++|||||+|+||++++++|+++|++|++++|+..... + .++.++.+|++ .+++.++++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-----~----------~~~~~~~~Dl~-~~~~~~~~~---- 61 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA-----I----------NDYEYRVSDYT-LEDLINQLN---- 61 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC--------------------CCEEEECCCC-HHHHHHHTT----
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-----C----------CceEEEEcccc-HHHHHHhhc----
Confidence 478999999999999999999999999999999943321 1 15788999999 888777654
Q ss_pred cCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccccccc
Q psy13409 96 NESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEK 175 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~ 175 (330)
.+|++||+|+..... +.+..+++|+.++.++++++. +.+.+++|++||.. .++.. ...++++..
T Consensus 62 ---~~d~Vih~a~~~~~~------~~~~~~~~n~~~~~~ll~a~~----~~~~~r~v~~SS~~-vyg~~--~~~~~~E~~ 125 (311)
T 3m2p_A 62 ---DVDAVVHLAATRGSQ------GKISEFHDNEILTQNLYDACY----ENNISNIVYASTIS-AYSDE--TSLPWNEKE 125 (311)
T ss_dssp ---TCSEEEECCCCCCSS------SCGGGTHHHHHHHHHHHHHHH----HTTCCEEEEEEEGG-GCCCG--GGCSBCTTS
T ss_pred ---CCCEEEEccccCCCC------ChHHHHHHHHHHHHHHHHHHH----HcCCCEEEEEccHH-HhCCC--CCCCCCCCC
Confidence 689999999976533 456678899999777777663 34567899999954 45432 223445555
Q ss_pred CCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCCCC
Q psy13409 176 GYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGAN 255 (330)
Q Consensus 176 ~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (330)
+..+...|+.+|.+.+.+++.++.+
T Consensus 126 ~~~p~~~Y~~sK~~~E~~~~~~~~~------------------------------------------------------- 150 (311)
T 3m2p_A 126 LPLPDLMYGVSKLACEHIGNIYSRK------------------------------------------------------- 150 (311)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHH-------------------------------------------------------
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHH-------------------------------------------------------
Confidence 5667789999999999999988874
Q ss_pred CCceeEEEeeCcccccCcccccCCCchhhHHHHH--Hh-------hhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 256 ITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQ--RV-------GGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 256 ~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~--~~-------~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
.|+++..+.||.|-++................. ++ ....+..++|+|++++.++..+. .|..|+-.
T Consensus 151 -~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~v~Dva~a~~~~~~~~~----~~~~~~i~ 225 (311)
T 3m2p_A 151 -KGLCIKNLRFAHLYGFNEKNNYMINRFFRQAFHGEQLTLHANSVAKREFLYAKDAAKSVIYALKQEK----VSGTFNIG 225 (311)
T ss_dssp -SCCEEEEEEECEEECSCC--CCHHHHHHHHHHTCCCEEESSBCCCCEEEEEHHHHHHHHHHHTTCTT----CCEEEEEC
T ss_pred -cCCCEEEEeeCceeCcCCCCCCHHHHHHHHHHcCCCeEEecCCCeEEceEEHHHHHHHHHHHHhcCC----CCCeEEeC
Confidence 578999999999987754321100011111110 00 01125578899999999986642 45555443
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.1e-18 Score=159.76 Aligned_cols=156 Identities=16% Similarity=0.136 Sum_probs=114.7
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
.++++++|||||+|+||++++++|+++|++|++++|+.....+. + . .-.++.++.+|++|.++++++++.
T Consensus 18 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~---l----~---~~~~~~~~~~Dl~d~~~~~~~~~~ 87 (333)
T 2q1w_A 18 GSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREH---L----K---DHPNLTFVEGSIADHALVNQLIGD 87 (333)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGG---S----C---CCTTEEEEECCTTCHHHHHHHHHH
T ss_pred cCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhh---H----h---hcCCceEEEEeCCCHHHHHHHHhc
Confidence 46889999999999999999999999999999999985421110 0 0 014688999999999999888875
Q ss_pred HHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccC----CCCCcc
Q psy13409 93 ILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWG----DGSMHF 168 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~----~~~~~~ 168 (330)
+++|++||+||..... +.++++ +++|+.++.++++++.+ .+.++||++||... ++ ... .
T Consensus 88 -----~~~D~vih~A~~~~~~---~~~~~~--~~~N~~~~~~l~~a~~~----~~~~~iV~~SS~~~-~g~~~~~~~-~- 150 (333)
T 2q1w_A 88 -----LQPDAVVHTAASYKDP---DDWYND--TLTNCVGGSNVVQAAKK----NNVGRFVYFQTALC-YGVKPIQQP-V- 150 (333)
T ss_dssp -----HCCSEEEECCCCCSCT---TCHHHH--HHHHTHHHHHHHHHHHH----TTCSEEEEEEEGGG-GCSCCCSSS-B-
T ss_pred -----cCCcEEEECceecCCC---ccCChH--HHHHHHHHHHHHHHHHH----hCCCEEEEECcHHH-hCCCcccCC-C-
Confidence 2689999999976532 334454 89999999999888765 34579999999654 33 211 0
Q ss_pred cccccccCCCcc-hhhHHhHHHHHHHHHH-HH
Q psy13409 169 EDINLEKGYSAT-GAYGRSKLANILFTTE-LA 198 (330)
Q Consensus 169 ~~~~~~~~~~~~-~~Y~asK~a~~~~~~~-la 198 (330)
++++.. .+. ..|+.+|++.+.+++. ++
T Consensus 151 -~~~E~~--~p~~~~Y~~sK~~~E~~~~~s~~ 179 (333)
T 2q1w_A 151 -RLDHPR--NPANSSYAISKSANEDYLEYSGL 179 (333)
T ss_dssp -CTTSCC--CCTTCHHHHHHHHHHHHHHHHTC
T ss_pred -CcCCCC--CCCCCchHHHHHHHHHHHHhhhC
Confidence 222222 234 7899999999999887 54
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.5e-18 Score=161.47 Aligned_cols=230 Identities=10% Similarity=0.004 Sum_probs=156.5
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHC-CCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCC-CHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKR-GARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLS-SLKSVRKC 89 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~-G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls-~~~si~~l 89 (330)
..+++|+||||||+|+||.+++++|+++ |++|++++|+.+...... ...++.++.+|++ +.++++++
T Consensus 20 ~~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~-----------~~~~v~~~~~Dl~~d~~~~~~~ 88 (372)
T 3slg_A 20 GSMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLV-----------KHERMHFFEGDITINKEWVEYH 88 (372)
T ss_dssp ---CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGG-----------GSTTEEEEECCTTTCHHHHHHH
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhc-----------cCCCeEEEeCccCCCHHHHHHH
Confidence 4577899999999999999999999998 999999999876533221 1357899999999 99988887
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 90 AQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
++ .+|++||+|+...+. ...++....+++|+.++.++++++. +.+ +++|++||.. .++.... .
T Consensus 89 ~~-------~~d~Vih~A~~~~~~--~~~~~~~~~~~~nv~~~~~ll~a~~----~~~-~~~v~~SS~~-vyg~~~~--~ 151 (372)
T 3slg_A 89 VK-------KCDVILPLVAIATPA--TYVKQPLRVFELDFEANLPIVRSAV----KYG-KHLVFPSTSE-VYGMCAD--E 151 (372)
T ss_dssp HH-------HCSEEEECBCCCCHH--HHHHCHHHHHHHHTTTTHHHHHHHH----HHT-CEEEEECCGG-GGBSCCC--S
T ss_pred hc-------cCCEEEEcCccccHH--HHhhCHHHHHHHHHHHHHHHHHHHH----HhC-CcEEEeCcHH-HhCCCCC--C
Confidence 76 379999999976432 1234566788999999877777664 344 8999999954 4443111 1
Q ss_pred ccccccCC-------CcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcc
Q psy13409 170 DINLEKGY-------SATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNH 242 (330)
Q Consensus 170 ~~~~~~~~-------~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (330)
+++..... .+...|+.+|.+.+.+++.++.
T Consensus 152 ~~~e~~~~~~~~p~~~p~~~Y~~sK~~~E~~~~~~~~------------------------------------------- 188 (372)
T 3slg_A 152 QFDPDASALTYGPINKPRWIYACSKQLMDRVIWGYGM------------------------------------------- 188 (372)
T ss_dssp SBCTTTCCEEECCTTCTTHHHHHHHHHHHHHHHHHHT-------------------------------------------
T ss_pred CCCccccccccCCCCCCCCcHHHHHHHHHHHHHHHHH-------------------------------------------
Confidence 22222211 3556899999999998887763
Q ss_pred cccccccCCCCCCCCceeEEEeeCcccccCcccccCC----CchhhHHHHHH---------hh----hhhccChHHHHHH
Q psy13409 243 YCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDS----IIPGTAWLYQR---------VG----GLFIKSPLQGAQT 305 (330)
Q Consensus 243 ~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~----~~~~~~~~~~~---------~~----~~~~~~~~e~a~~ 305 (330)
.++++..|.|+.|-.+....... .......+... .+ ...+..++|+|++
T Consensus 189 --------------~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a 254 (372)
T 3slg_A 189 --------------EGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLVDGGSQKRAFTYVDDGISA 254 (372)
T ss_dssp --------------TTCEEEEEEECSEECSSCCCTTCSBSCSCHHHHHHHHHHHHTCCEEEGGGGCCEEECEEHHHHHHH
T ss_pred --------------CCCCEEEEccccccCCCcccccccccccchHHHHHHHHHHcCCCcEEeCCCceEEEEEEHHHHHHH
Confidence 36889999999997775432110 01111111110 01 0124578999999
Q ss_pred HHHhhccccccccCceecccCC
Q psy13409 306 TLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 306 ~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
++.++..+. ....|..|+-..
T Consensus 255 ~~~~~~~~~-~~~~~~~~ni~~ 275 (372)
T 3slg_A 255 LMKIIENSN-GVATGKIYNIGN 275 (372)
T ss_dssp HHHHHHCGG-GTTTTEEEEECC
T ss_pred HHHHHhccc-CcCCCceEEeCC
Confidence 999997643 224677776554
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=99.77 E-value=5e-18 Score=157.42 Aligned_cols=157 Identities=14% Similarity=0.067 Sum_probs=117.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHC--CCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKR--GARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~--G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
+|++|||||+|+||.+++++|+++ |++|++++|+..... +. .++.++.+|+++.++++++++..
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~-----~~---------~~~~~~~~D~~d~~~~~~~~~~~ 67 (312)
T 2yy7_A 2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTD-----VV---------NSGPFEVVNALDFNQIEHLVEVH 67 (312)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCH-----HH---------HSSCEEECCTTCHHHHHHHHHHT
T ss_pred CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCcccc-----cc---------CCCceEEecCCCHHHHHHHHhhc
Confidence 578999999999999999999999 899999999865421 11 12467899999999988887653
Q ss_pred HhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccccc
Q psy13409 94 LDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINL 173 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~ 173 (330)
.+|++||+||..... ...+++..+++|+.++.++++++.+ .+.+++|++||.....+.. ...+.+.
T Consensus 68 -----~~d~vih~a~~~~~~---~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~--~~~~~~e 133 (312)
T 2yy7_A 68 -----KITDIYLMAALLSAT---AEKNPAFAWDLNMNSLFHVLNLAKA----KKIKKIFWPSSIAVFGPTT--PKENTPQ 133 (312)
T ss_dssp -----TCCEEEECCCCCHHH---HHHCHHHHHHHHHHHHHHHHHHHHT----TSCSEEECCEEGGGCCTTS--CSSSBCS
T ss_pred -----CCCEEEECCccCCCc---hhhChHHHHHHHHHHHHHHHHHHHH----cCCCEEEEeccHHHhCCCC--CCCCccc
Confidence 589999999975321 2356778899999998888777643 4457999999975433211 1122333
Q ss_pred ccCCCcchhhHHhHHHHHHHHHHHHHH
Q psy13409 174 EKGYSATGAYGRSKLANILFTTELAKR 200 (330)
Q Consensus 174 ~~~~~~~~~Y~asK~a~~~~~~~la~~ 200 (330)
..+..+...|+.+|++.+.+++.++.+
T Consensus 134 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~ 160 (312)
T 2yy7_A 134 YTIMEPSTVYGISKQAGERWCEYYHNI 160 (312)
T ss_dssp SCBCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCCCCchhHHHHHHHHHHHHHHHHh
Confidence 334456778999999999999988765
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.5e-17 Score=154.60 Aligned_cols=226 Identities=11% Similarity=-0.006 Sum_probs=152.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHC-CCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCH-HHHHHHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKR-GARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSL-KSVRKCAQEIL 94 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~-G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~-~si~~l~~~i~ 94 (330)
|++|||||+|+||++++++|+++ |++|++++|+..+.+... ...++.++.+|+++. +.++++++
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~-----------~~~~~~~~~~D~~~~~~~~~~~~~--- 66 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL-----------NHPHFHFVEGDISIHSEWIEYHVK--- 66 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGT-----------TCTTEEEEECCTTTCSHHHHHHHH---
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhh-----------cCCCeEEEeccccCcHHHHHhhcc---
Confidence 47999999999999999999998 899999999876532210 235788999999984 55666654
Q ss_pred hcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccc
Q psy13409 95 DNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLE 174 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~ 174 (330)
.+|++||+||...+. ...++++..+++|+.++.++++++.+ .+ +++|++||... ++.... .+++..
T Consensus 67 ----~~d~vih~A~~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~v~~SS~~v-~g~~~~--~~~~e~ 132 (345)
T 2bll_A 67 ----KCDVVLPLVAIATPI--EYTRNPLRVFELDFEENLRIIRYCVK----YR-KRIIFPSTSEV-YGMCSD--KYFDED 132 (345)
T ss_dssp ----HCSEEEECBCCCCHH--HHHHSHHHHHHHHTHHHHHHHHHHHH----TT-CEEEEECCGGG-GBTCCC--SSBCTT
T ss_pred ----CCCEEEEcccccCcc--chhcCHHHHHHHHHHHHHHHHHHHHH----hC-CeEEEEecHHH-cCCCCC--CCcCCc
Confidence 369999999975421 11345677899999998888777643 34 89999999654 332111 112221
Q ss_pred cC-------CCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 175 KG-------YSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 175 ~~-------~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
.+ ..+...|+.+|++.+.+++.++.+
T Consensus 133 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~----------------------------------------------- 165 (345)
T 2bll_A 133 HSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEK----------------------------------------------- 165 (345)
T ss_dssp TCCCBCCCTTCGGGHHHHHHHHHHHHHHHHHHH-----------------------------------------------
T ss_pred ccccccCcccCcccccHHHHHHHHHHHHHHHHh-----------------------------------------------
Confidence 11 124458999999999999998865
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCC-----C---chhhHHHHH--H---hhh----hhccChHHHHHHHHHhh
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDS-----I---IPGTAWLYQ--R---VGG----LFIKSPLQGAQTTLYCA 310 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~-----~---~~~~~~~~~--~---~~~----~~~~~~~e~a~~~~~l~ 310 (330)
.|++++.|.||.|-++....... . ......... + .+. ..+..++|+|+++++++
T Consensus 166 ---------~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~ 236 (345)
T 2bll_A 166 ---------EGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII 236 (345)
T ss_dssp ---------HCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEGGGSCCEEECEEHHHHHHHHHHHH
T ss_pred ---------cCCCEEEEcCCcccCCCcccccccccccccHHHHHHHHHHcCCCcEEECCCCEEEEEEEHHHHHHHHHHHH
Confidence 36889999999998876432110 0 001111111 0 111 12568999999999998
Q ss_pred ccccccccCceecccCC
Q psy13409 311 LDKKCERETGLYYAKAD 327 (330)
Q Consensus 311 ~~~~~~~~~G~~~~~~~ 327 (330)
..+. ...+|+.|+-..
T Consensus 237 ~~~~-~~~~g~~~~i~~ 252 (345)
T 2bll_A 237 ENAG-NRCDGEIINIGN 252 (345)
T ss_dssp HCGG-GTTTTEEEEECC
T ss_pred hhcc-ccCCCceEEeCC
Confidence 6542 234677766544
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=3.4e-19 Score=156.61 Aligned_cols=188 Identities=13% Similarity=0.038 Sum_probs=137.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCC--EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGA--RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
++|+++||||+|+||++++++|+++|+ +|++++|+... ...++.++.+|+++.+++++++
T Consensus 4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~----------------~~~~~~~~~~D~~~~~~~~~~~-- 65 (215)
T 2a35_A 4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA----------------EHPRLDNPVGPLAELLPQLDGS-- 65 (215)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC----------------CCTTEECCBSCHHHHGGGCCSC--
T ss_pred CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc----------------cCCCceEEeccccCHHHHHHhh--
Confidence 578999999999999999999999998 99999998753 1246788899998877655443
Q ss_pred HHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccc
Q psy13409 93 ILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDIN 172 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~ 172 (330)
+|++|||||.... +.++++..+++|+.++..+++++.+ .+.+++|++||.... +
T Consensus 66 -------~d~vi~~a~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~Ss~~~~-~---------- 119 (215)
T 2a35_A 66 -------IDTAFCCLGTTIK----EAGSEEAFRAVDFDLPLAVGKRALE----MGARHYLVVSALGAD-A---------- 119 (215)
T ss_dssp -------CSEEEECCCCCHH----HHSSHHHHHHHHTHHHHHHHHHHHH----TTCCEEEEECCTTCC-T----------
T ss_pred -------hcEEEECeeeccc----cCCCHHHHHHhhHHHHHHHHHHHHH----cCCCEEEEECCcccC-C----------
Confidence 8999999996532 2456778889999998888877643 455799999997643 2
Q ss_pred cccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCC
Q psy13409 173 LEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPP 252 (330)
Q Consensus 173 ~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (330)
.+...|+.+|++++.+++
T Consensus 120 -----~~~~~y~~sK~~~e~~~~--------------------------------------------------------- 137 (215)
T 2a35_A 120 -----KSSIFYNRVKGELEQALQ--------------------------------------------------------- 137 (215)
T ss_dssp -----TCSSHHHHHHHHHHHHHT---------------------------------------------------------
T ss_pred -----CCccHHHHHHHHHHHHHH---------------------------------------------------------
Confidence 234589999999887754
Q ss_pred CCCCCcee-EEEeeCcccccCcccc-cCCC-chhhHHHHHHhhhhhccChHHHHHHHHHhhccc
Q psy13409 253 GANITNVN-TYAVHPGVVDTELSRH-FDSI-IPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDK 313 (330)
Q Consensus 253 ~~~~~~i~-v~~v~pG~v~t~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~ 313 (330)
. .+++ ++.|.||++.++.... +... ......... +...+.+++|+|+.++.++..+
T Consensus 138 ~---~~~~~~~~vrp~~v~g~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~Dva~~~~~~~~~~ 196 (215)
T 2a35_A 138 E---QGWPQLTIARPSLLFGPREEFRLAEILAAPIARILP--GKYHGIEACDLARALWRLALEE 196 (215)
T ss_dssp T---SCCSEEEEEECCSEESTTSCEEGGGGTTCCCC------CHHHHHHHHHHHHHHHHHHTCC
T ss_pred H---cCCCeEEEEeCceeeCCCCcchHHHHHHHhhhhccC--CCcCcEeHHHHHHHHHHHHhcC
Confidence 2 4688 9999999998875331 1000 000000111 1233678999999999998664
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-17 Score=154.28 Aligned_cols=152 Identities=18% Similarity=0.206 Sum_probs=115.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHC--CCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 18 TAIVTGSNTGIGKCTANELAKR--GARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~--G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
++|||||+|+||++++++|+++ |++|++++|+.... .++.++.+|++|.++++++++..
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~-----------------~~~~~~~~D~~d~~~~~~~~~~~-- 61 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDT-----------------GGIKFITLDVSNRDEIDRAVEKY-- 61 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCC-----------------TTCCEEECCTTCHHHHHHHHHHT--
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCccc-----------------cCceEEEecCCCHHHHHHHHhhc--
Confidence 4899999999999999999998 89999999875421 13467899999999988887642
Q ss_pred cCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccccccc
Q psy13409 96 NESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEK 175 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~ 175 (330)
.+|++||+||.... ...++++..+++|+.++.++++++.+ .+.+++|++||.....+. . ...+.+...
T Consensus 62 ---~~d~vih~a~~~~~---~~~~~~~~~~~~n~~~~~~l~~a~~~----~~~~~~v~~SS~~~~~~~-~-~~~~~~e~~ 129 (317)
T 3ajr_A 62 ---SIDAIFHLAGILSA---KGEKDPALAYKVNMNGTYNILEAAKQ----HRVEKVVIPSTIGVFGPE-T-PKNKVPSIT 129 (317)
T ss_dssp ---TCCEEEECCCCCHH---HHHHCHHHHHHHHHHHHHHHHHHHHH----TTCCEEEEEEEGGGCCTT-S-CSSSBCSSS
T ss_pred ---CCcEEEECCcccCC---ccccChHHHhhhhhHHHHHHHHHHHH----cCCCEEEEecCHHHhCCC-C-CCCCccccc
Confidence 68999999997532 12356778899999998888887643 445799999997654321 1 111233333
Q ss_pred CCCcchhhHHhHHHHHHHHHHHHHH
Q psy13409 176 GYSATGAYGRSKLANILFTTELAKR 200 (330)
Q Consensus 176 ~~~~~~~Y~asK~a~~~~~~~la~~ 200 (330)
+..+...|+.+|++.+.+++.++.+
T Consensus 130 ~~~p~~~Y~~sK~~~e~~~~~~~~~ 154 (317)
T 3ajr_A 130 ITRPRTMFGVTKIAAELLGQYYYEK 154 (317)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCchHHHHHHHHHHHHHHHHHh
Confidence 4456789999999999999988764
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-17 Score=157.17 Aligned_cols=166 Identities=19% Similarity=0.146 Sum_probs=117.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
+++|||||+|+||++++++|+++|++|++++|......+..+.+... .+.++.++.+|++++++++++++..
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~~~--- 72 (338)
T 1udb_A 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERL-----GGKHPTFVEGDIRNEALMTEILHDH--- 72 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHH-----HTSCCEEEECCTTCHHHHHHHHHHT---
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCCcchhHHHHHHhh-----cCCcceEEEccCCCHHHHHHHhhcc---
Confidence 37999999999999999999999999999987432111112222221 1346788999999999988887652
Q ss_pred CCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccccC
Q psy13409 97 ESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKG 176 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~ 176 (330)
.+|++|||||..... ...++....+++|+.++.++++.+ .+.+.++||++||.+. ++... ..+++...+
T Consensus 73 --~~D~vih~A~~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~iv~~SS~~~-~g~~~--~~~~~e~~~ 141 (338)
T 1udb_A 73 --AIDTVIHFAGLKAVG--ESVQKPLEYYDNNVNGTLRLISAM----RAANVKNFIFSSSATV-YGDNP--KIPYVESFP 141 (338)
T ss_dssp --TCSEEEECCSCCCHH--HHHHCHHHHHHHHHHHHHHHHHHH----HHHTCCEEEEEEEGGG-GCSCC--SSSBCTTSC
T ss_pred --CCCEEEECCccCccc--cchhcHHHHHHHHHHHHHHHHHHH----HhcCCCeEEEEccHHH-hCCCC--CCCcCcccC
Confidence 589999999975321 123455678999999988887754 3445689999999653 43211 122333233
Q ss_pred C-CcchhhHHhHHHHHHHHHHHHHHh
Q psy13409 177 Y-SATGAYGRSKLANILFTTELAKRL 201 (330)
Q Consensus 177 ~-~~~~~Y~asK~a~~~~~~~la~~~ 201 (330)
. +....|+.||++++.+++.++.+.
T Consensus 142 ~~~~~~~Y~~sK~~~e~~~~~~~~~~ 167 (338)
T 1udb_A 142 TGTPQSPYGKSKLMVEQILTDLQKAQ 167 (338)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHhc
Confidence 2 236789999999999999998773
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.5e-17 Score=161.48 Aligned_cols=168 Identities=18% Similarity=0.214 Sum_probs=117.4
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHC---CCEEEEEecChhHHHHHHHHHHHhhccc----------CCCCeEEEEEc
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKR---GARVIMACRSLEKAETAADDIRTSLKDV----------KDAGEVVIRQL 78 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~---G~~Vil~~R~~~~l~~~~~~l~~~~~~~----------~~~~~v~~i~~ 78 (330)
...++|+||||||+|+||++++++|++. |++|++++|+.+.... .+.+.+..... ....++.++.+
T Consensus 69 ~~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 147 (478)
T 4dqv_A 69 PSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDA-RRRLEKTFDSGDPELLRHFKELAADRLEVVAG 147 (478)
T ss_dssp CCSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHH-HHHHHGGGCSSCHHHHHHHHHHHTTTEEEEEC
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHH-HHHHHHHHHhcchhhhhhhhhhccCceEEEEe
Confidence 3468999999999999999999999999 8999999998765422 22232221100 01368999999
Q ss_pred cCC------CHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEE
Q psy13409 79 DLS------SLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARII 152 (330)
Q Consensus 79 Dls------~~~si~~l~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV 152 (330)
|++ +.++++.+++ .+|++|||||.... +.++..+++|+.++.++++.+. +.+.+++|
T Consensus 148 Dl~~~~~gld~~~~~~~~~-------~~D~Vih~Aa~~~~------~~~~~~~~~Nv~gt~~ll~aa~----~~~~~~~V 210 (478)
T 4dqv_A 148 DKSEPDLGLDQPMWRRLAE-------TVDLIVDSAAMVNA------FPYHELFGPNVAGTAELIRIAL----TTKLKPFT 210 (478)
T ss_dssp CTTSGGGGCCHHHHHHHHH-------HCCEEEECCSSCSB------SSCCEEHHHHHHHHHHHHHHHT----SSSCCCEE
T ss_pred ECCCcccCCCHHHHHHHHc-------CCCEEEECccccCC------cCHHHHHHHHHHHHHHHHHHHH----hCCCCeEE
Confidence 999 5556666654 47999999998643 4456778999999888877653 34457999
Q ss_pred EEcCCCcccCCCCCcccccccccCC-----------CcchhhHHhHHHHHHHHHHHHHH
Q psy13409 153 NLSSLAHTWGDGSMHFEDINLEKGY-----------SATGAYGRSKLANILFTTELAKR 200 (330)
Q Consensus 153 ~iSS~~~~~~~~~~~~~~~~~~~~~-----------~~~~~Y~asK~a~~~~~~~la~~ 200 (330)
++||.. .++.... .+++...+. .....|+.+|.+.+.+++.++.+
T Consensus 211 ~iSS~~-v~~~~~~--~~~~E~~~~~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~ 266 (478)
T 4dqv_A 211 YVSTAD-VGAAIEP--SAFTEDADIRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDL 266 (478)
T ss_dssp EEEEGG-GGTTSCT--TTCCSSSCHHHHCCEEECCTTSEECHHHHHHHHHHHHHHHHHH
T ss_pred EEeehh-hcCccCC--CCcCCcccccccCcccccccccccchHHHHHHHHHHHHHHHHH
Confidence 999964 3332111 111111111 12245999999999999988875
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-17 Score=156.24 Aligned_cols=216 Identities=13% Similarity=0.026 Sum_probs=143.4
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
..++++++|||||+|+||++++++|+++|++|++++|+.....+..+.+ ....++.++.+|+++..
T Consensus 23 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~~~D~~~~~------- 88 (343)
T 2b69_A 23 MEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHW-------IGHENFELINHDVVEPL------- 88 (343)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGG-------TTCTTEEEEECCTTSCC-------
T ss_pred cccCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCCccchhhhhhh-------ccCCceEEEeCccCChh-------
Confidence 4578999999999999999999999999999999999753211111111 12356889999998742
Q ss_pred HHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccc
Q psy13409 92 EILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDI 171 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~ 171 (330)
+..+|++||+||...... ..++++..+++|+.++.++++++.+ .+ .++|++||.. .++.... .++
T Consensus 89 -----~~~~d~vih~A~~~~~~~--~~~~~~~~~~~n~~~~~~l~~a~~~----~~-~~~v~~SS~~-v~g~~~~--~~~ 153 (343)
T 2b69_A 89 -----YIEVDQIYHLASPASPPN--YMYNPIKTLKTNTIGTLNMLGLAKR----VG-ARLLLASTSE-VYGDPEV--HPQ 153 (343)
T ss_dssp -----CCCCSEEEECCSCCSHHH--HTTCHHHHHHHHHHHHHHHHHHHHH----HT-CEEEEEEEGG-GGBSCSS--SSB
T ss_pred -----hcCCCEEEECccccCchh--hhhCHHHHHHHHHHHHHHHHHHHHH----hC-CcEEEECcHH-HhCCCCC--CCC
Confidence 356899999999754211 1235567889999999888887754 33 5999999964 3432111 112
Q ss_pred ccc-----cCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccc
Q psy13409 172 NLE-----KGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKN 246 (330)
Q Consensus 172 ~~~-----~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (330)
+.. .+..+...|+.+|++.+.+++.++.+
T Consensus 154 ~E~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---------------------------------------------- 187 (343)
T 2b69_A 154 SEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQ---------------------------------------------- 187 (343)
T ss_dssp CTTCCCBCCSSSTTHHHHHHHHHHHHHHHHHHHH----------------------------------------------
T ss_pred cccccccCCCCCCCCchHHHHHHHHHHHHHHHHH----------------------------------------------
Confidence 211 34455678999999999999998865
Q ss_pred cccCCCCCCCCceeEEEeeCcccccCcccccCCC--chhhHHHHH--H---hh----hhhccChHHHHHHHHHhhcc
Q psy13409 247 VLFHPPGANITNVNTYAVHPGVVDTELSRHFDSI--IPGTAWLYQ--R---VG----GLFIKSPLQGAQTTLYCALD 312 (330)
Q Consensus 247 ~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~--~~~~~~~~~--~---~~----~~~~~~~~e~a~~~~~l~~~ 312 (330)
.+++++.|.||.|-++........ ......... + .+ ...+..++|+|++++.++..
T Consensus 188 ----------~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~ 254 (343)
T 2b69_A 188 ----------EGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNS 254 (343)
T ss_dssp ----------HCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEESSSCCEEECEEHHHHHHHHHHHHTS
T ss_pred ----------hCCcEEEEEEcceeCcCCCCCcccHHHHHHHHHHcCCCceEcCCCCeEEeeEeHHHHHHHHHHHHhc
Confidence 468899999999988754321110 011111111 0 00 11245899999999999854
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-18 Score=157.54 Aligned_cols=143 Identities=19% Similarity=0.148 Sum_probs=111.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
++++||||+|+||++++++|+ +|++|++++|+... . .+ +.+|++++++++++++.+
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~~-~--------------~~-----~~~Dl~~~~~~~~~~~~~--- 56 (273)
T 2ggs_A 1 MRTLITGASGQLGIELSRLLS-ERHEVIKVYNSSEI-Q--------------GG-----YKLDLTDFPRLEDFIIKK--- 56 (273)
T ss_dssp CCEEEETTTSHHHHHHHHHHT-TTSCEEEEESSSCC-T--------------TC-----EECCTTSHHHHHHHHHHH---
T ss_pred CEEEEECCCChhHHHHHHHHh-cCCeEEEecCCCcC-C--------------CC-----ceeccCCHHHHHHHHHhc---
Confidence 369999999999999999999 58999999998631 0 01 789999999999988765
Q ss_pred CCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccccC
Q psy13409 97 ESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKG 176 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~ 176 (330)
++|++|||||.... ..+.++++..+++|+.++.++++++.+ . ++++|++||.....+..+ +++...+
T Consensus 57 --~~d~vi~~a~~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~----~-~~~iv~~SS~~~~~~~~~----~~~e~~~ 123 (273)
T 2ggs_A 57 --RPDVIINAAAMTDV--DKCEIEKEKAYKINAEAVRHIVRAGKV----I-DSYIVHISTDYVFDGEKG----NYKEEDI 123 (273)
T ss_dssp --CCSEEEECCCCCCH--HHHHHCHHHHHHHHTHHHHHHHHHHHH----T-TCEEEEEEEGGGSCSSSC----SBCTTSC
T ss_pred --CCCEEEECCcccCh--hhhhhCHHHHHHHhHHHHHHHHHHHHH----h-CCeEEEEecceeEcCCCC----CcCCCCC
Confidence 68999999997642 223467888999999999999888754 3 359999999876544321 3344444
Q ss_pred CCcchhhHHhHHHHHHHHHH
Q psy13409 177 YSATGAYGRSKLANILFTTE 196 (330)
Q Consensus 177 ~~~~~~Y~asK~a~~~~~~~ 196 (330)
..+...|+.+|++++.+++.
T Consensus 124 ~~~~~~Y~~sK~~~e~~~~~ 143 (273)
T 2ggs_A 124 PNPINYYGLSKLLGETFALQ 143 (273)
T ss_dssp CCCSSHHHHHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHHHHhC
Confidence 45567999999999988876
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-17 Score=171.60 Aligned_cols=175 Identities=21% Similarity=0.216 Sum_probs=122.9
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
++.+++|+||||||+|+||++++++|+++|++|++++|+.....+..+.+... ...++.++.+|+++.+++++++
T Consensus 6 ~~~~~~~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~-----~~~~v~~v~~Dl~d~~~l~~~~ 80 (699)
T 1z45_A 6 QSESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVL-----TKHHIPFYEVDLCDRKGLEKVF 80 (699)
T ss_dssp -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHH-----HTSCCCEEECCTTCHHHHHHHH
T ss_pred ccccCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCcchHHHHHHHhhc-----cCCceEEEEcCCCCHHHHHHHH
Confidence 34578999999999999999999999999999999998754322222233221 1346788999999999988887
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCC--Ccc
Q psy13409 91 QEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGS--MHF 168 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~--~~~ 168 (330)
+.. .+|+|||+||..... ...+.....+++|+.++.++++++ .+.+.++||++||.+. ++... ...
T Consensus 81 ~~~-----~~D~Vih~A~~~~~~--~~~~~~~~~~~~Nv~gt~~ll~a~----~~~~~~~iV~~SS~~v-yg~~~~~~~~ 148 (699)
T 1z45_A 81 KEY-----KIDSVIHFAGLKAVG--ESTQIPLRYYHNNILGTVVLLELM----QQYNVSKFVFSSSATV-YGDATRFPNM 148 (699)
T ss_dssp HHS-----CCCEEEECCSCCCHH--HHHHSHHHHHHHHHHHHHHHHHHH----HHHTCCEEEEEEEGGG-GCCGGGSTTC
T ss_pred HhC-----CCCEEEECCcccCcC--ccccCHHHHHHHHHHHHHHHHHHH----HHcCCCEEEEECcHHH-hCCCcccccc
Confidence 642 689999999976321 112334567899999988876654 3445689999999653 43211 011
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQ 202 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~ 202 (330)
.+++...+..+...|+.+|++++.+++.++.+..
T Consensus 149 ~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~ 182 (699)
T 1z45_A 149 IPIPEECPLGPTNPYGHTKYAIENILNDLYNSDK 182 (699)
T ss_dssp CSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHST
T ss_pred CCccccCCCCCCChHHHHHHHHHHHHHHHHHhcc
Confidence 2333334445667999999999999999988753
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.8e-17 Score=149.02 Aligned_cols=153 Identities=13% Similarity=0.018 Sum_probs=108.9
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
+.++++++|||||+|+||++++++|+++|+ +... ....+..+.+|++|.++++++++
T Consensus 2 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~------~~~~-----------------~~~~~~~~~~D~~d~~~~~~~~~ 58 (319)
T 4b8w_A 2 LYFQSMRILVTGGSGLVGKAIQKVVADGAG------LPGE-----------------DWVFVSSKDADLTDTAQTRALFE 58 (319)
T ss_dssp CCCCCCEEEEETCSSHHHHHHHHHHHTTTC------CTTC-----------------EEEECCTTTCCTTSHHHHHHHHH
T ss_pred ccccCCeEEEECCCcHHHHHHHHHHHhcCC------cccc-----------------cccccCceecccCCHHHHHHHHh
Confidence 457889999999999999999999999997 1100 11233445789999999888877
Q ss_pred HHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccc
Q psy13409 92 EILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDI 171 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~ 171 (330)
.. ++|++||+|+..... ..+.++....+++|+.++.++++++. +.+.+++|++||.. .++... ..++
T Consensus 59 ~~-----~~d~Vih~A~~~~~~-~~~~~~~~~~~~~nv~gt~~ll~a~~----~~~~~~~v~~SS~~-vyg~~~--~~~~ 125 (319)
T 4b8w_A 59 KV-----QPTHVIHLAAMVGGL-FRNIKYNLDFWRKNVHMNDNVLHSAF----EVGARKVVSCLSTC-IFPDKT--TYPI 125 (319)
T ss_dssp HS-----CCSEEEECCCCCCCH-HHHTTCHHHHHHHHHHHHHHHHHHHH----HTTCSEEEEECCGG-GSCSSC--CSSB
T ss_pred hc-----CCCEEEECceecccc-cccccCHHHHHHHHHHHHHHHHHHHH----HcCCCeEEEEcchh-hcCCCC--CCCc
Confidence 52 589999999985321 12335567789999999888777653 34457999999974 444321 1223
Q ss_pred cccc----CC-CcchhhHHhHHHHHHHHHHHHHH
Q psy13409 172 NLEK----GY-SATGAYGRSKLANILFTTELAKR 200 (330)
Q Consensus 172 ~~~~----~~-~~~~~Y~asK~a~~~~~~~la~~ 200 (330)
++.. +. +....|+.+|.+.+.+++.++++
T Consensus 126 ~E~~~~~~~~~p~~~~Y~~sK~~~E~~~~~~~~~ 159 (319)
T 4b8w_A 126 DETMIHNGPPHNSNFGYSYAKRMIDVQNRAYFQQ 159 (319)
T ss_dssp CGGGGGBSCCCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCCCCCcchHHHHHHHHHHHHHHHHHh
Confidence 3322 22 23336999999999999998875
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=4.3e-17 Score=150.73 Aligned_cols=213 Identities=13% Similarity=0.027 Sum_probs=144.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHCC-CEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRG-ARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G-~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
++|||||+|+||++++++|+++| ++|++++|+..... ...+. . +. +.+|+++.++++++++.. .
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~~--------~--~~-~~~d~~~~~~~~~~~~~~--~ 65 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK--FVNLV--------D--LN-IADYMDKEDFLIQIMAGE--E 65 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGG--GHHHH--------T--SC-CSEEEEHHHHHHHHHTTC--C
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCch--hhhcC--------c--ce-eccccccHHHHHHHHhcc--c
Confidence 48999999999999999999999 89999999765421 11111 1 11 678998888777665421 1
Q ss_pred CCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccccC
Q psy13409 97 ESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKG 176 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~ 176 (330)
++.+|++||+||.... ..++++..+++|+.++.++++++.+ .+. ++|++||... ++... ..+++...+
T Consensus 66 ~~~~d~vi~~a~~~~~----~~~~~~~~~~~n~~~~~~l~~a~~~----~~~-~~v~~SS~~v-~g~~~--~~~~~E~~~ 133 (310)
T 1eq2_A 66 FGDVEAIFHEGACSST----TEWDGKYMMDNNYQYSKELLHYCLE----REI-PFLYASSAAT-YGGRT--SDFIESREY 133 (310)
T ss_dssp CSSCCEEEECCSCCCT----TCCCHHHHHHHTHHHHHHHHHHHHH----HTC-CEEEEEEGGG-GTTCC--SCBCSSGGG
T ss_pred cCCCcEEEECcccccC----cccCHHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEeeHHH-hCCCC--CCCCCCCCC
Confidence 2368999999997643 3456788899999998888887754 345 9999999754 44211 113344444
Q ss_pred CCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCCCCC
Q psy13409 177 YSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGANI 256 (330)
Q Consensus 177 ~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (330)
..+...|+.+|++.+.+++.++.+
T Consensus 134 ~~p~~~Y~~sK~~~e~~~~~~~~~-------------------------------------------------------- 157 (310)
T 1eq2_A 134 EKPLNVYGYSKFLFDEYVRQILPE-------------------------------------------------------- 157 (310)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHGGG--------------------------------------------------------
T ss_pred CCCCChhHHHHHHHHHHHHHHHHH--------------------------------------------------------
Confidence 556778999999999999887642
Q ss_pred CceeEEEeeCcccccCcccccCCCchhhHHH----H-----HHhh-----hhhccChHHHHHHHHHhhccc
Q psy13409 257 TNVNTYAVHPGVVDTELSRHFDSIIPGTAWL----Y-----QRVG-----GLFIKSPLQGAQTTLYCALDK 313 (330)
Q Consensus 257 ~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~----~-----~~~~-----~~~~~~~~e~a~~~~~l~~~~ 313 (330)
.|++++.|.||.|-++..............+ . ...+ ...+..++|+|++++.++..+
T Consensus 158 ~g~~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~Dva~~~~~~~~~~ 228 (310)
T 1eq2_A 158 ANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENG 228 (310)
T ss_dssp CSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC-------------CBCEEEHHHHHHHHHHHHHHC
T ss_pred cCCCEEEEeCCcEECcCCCCCCccchHHHHHHHHHHcCCCcEEecCCCcceEccEEHHHHHHHHHHHHhcC
Confidence 5799999999999887543111000001110 0 0011 123567999999999998654
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.5e-16 Score=146.60 Aligned_cols=205 Identities=11% Similarity=0.016 Sum_probs=142.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
++|++|||||+|+||.+++++|+++|++|+++.|+. .+|+++.++++++++..
T Consensus 2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~--------------------------~~D~~d~~~~~~~~~~~- 54 (321)
T 1e6u_A 2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD--------------------------ELNLLDSRAVHDFFASE- 54 (321)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT--------------------------TCCTTCHHHHHHHHHHH-
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCc--------------------------cCCccCHHHHHHHHHhc-
Confidence 468999999999999999999999999999887752 26999999988887754
Q ss_pred hcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccc
Q psy13409 95 DNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLE 174 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~ 174 (330)
.+|++||+||..... ....++.+..+++|+.++.++++++.+ .+.+++|++||... ++... ..+++..
T Consensus 55 ----~~d~vih~a~~~~~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~v-yg~~~--~~~~~E~ 122 (321)
T 1e6u_A 55 ----RIDQVYLAAAKVGGI-VANNTYPADFIYQNMMIESNIIHAAHQ----NDVNKLLFLGSSCI-YPKLA--KQPMAES 122 (321)
T ss_dssp ----CCSEEEECCCCCCCH-HHHHHCHHHHHHHHHHHHHHHHHHHHH----TTCCEEEEECCGGG-SCTTC--CSSBCGG
T ss_pred ----CCCEEEEcCeecCCc-chhhhCHHHHHHHHHHHHHHHHHHHHH----hCCCeEEEEccHHH-cCCCC--CCCcCcc
Confidence 589999999975311 112345677889999998888777644 44579999999654 43211 1122222
Q ss_pred c----CCCc-chhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 175 K----GYSA-TGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 175 ~----~~~~-~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
. +..+ ...|+.+|++.+.+++.++.+
T Consensus 123 ~~~~~~~~p~~~~Y~~sK~~~E~~~~~~~~~------------------------------------------------- 153 (321)
T 1e6u_A 123 ELLQGTLEPTNEPYAIAKIAGIKLCESYNRQ------------------------------------------------- 153 (321)
T ss_dssp GTTSSCCCGGGHHHHHHHHHHHHHHHHHHHH-------------------------------------------------
T ss_pred ccccCCCCCCCCccHHHHHHHHHHHHHHHHH-------------------------------------------------
Confidence 2 2223 358999999999999998864
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHh------h------------hhhccChHHHHHHHHHhhc
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRV------G------------GLFIKSPLQGAQTTLYCAL 311 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~------~------------~~~~~~~~e~a~~~~~l~~ 311 (330)
.+++++.|.||.|-++..............+...+ + ...+..++|+|++++.++.
T Consensus 154 -------~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~i~v~Dva~~~~~~~~ 226 (321)
T 1e6u_A 154 -------YGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHVME 226 (321)
T ss_dssp -------HCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEESCSCCEECEEEHHHHHHHHHHHHH
T ss_pred -------hCCCEEEEEeCCcCCcCCCCCCCCCccHHHHHHHHHHhhhcCCCceEEcCCCCEEEEeEEHHHHHHHHHHHHh
Confidence 46899999999998875432111111111111110 0 0113478999999999986
Q ss_pred ccc
Q psy13409 312 DKK 314 (330)
Q Consensus 312 ~~~ 314 (330)
.+.
T Consensus 227 ~~~ 229 (321)
T 1e6u_A 227 LAH 229 (321)
T ss_dssp SCH
T ss_pred Ccc
Confidence 643
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.9e-17 Score=151.14 Aligned_cols=143 Identities=23% Similarity=0.304 Sum_probs=110.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
-.-+++|||||+|+||++++++|+++|++|++++|+ .+|+++.++++++++..
T Consensus 10 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~---------------------------~~Dl~d~~~~~~~~~~~ 62 (292)
T 1vl0_A 10 HHHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQ---------------------------DLDITNVLAVNKFFNEK 62 (292)
T ss_dssp --CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTT---------------------------TCCTTCHHHHHHHHHHH
T ss_pred cccceEEEECCCChHHHHHHHHHHhCCCeEEeccCc---------------------------cCCCCCHHHHHHHHHhc
Confidence 356899999999999999999999999999999886 27999999998888765
Q ss_pred HhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccccc
Q psy13409 94 LDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINL 173 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~ 173 (330)
.+|++||+||.... ..+.++++..+++|+.++.++++++.+ .+ .++|++||.+...+. . ..++++
T Consensus 63 -----~~d~vih~A~~~~~--~~~~~~~~~~~~~nv~~~~~l~~a~~~----~~-~~iv~~SS~~v~~~~-~--~~~~~E 127 (292)
T 1vl0_A 63 -----KPNVVINCAAHTAV--DKCEEQYDLAYKINAIGPKNLAAAAYS----VG-AEIVQISTDYVFDGE-A--KEPITE 127 (292)
T ss_dssp -----CCSEEEECCCCCCH--HHHHHCHHHHHHHHTHHHHHHHHHHHH----HT-CEEEEEEEGGGSCSC-C--SSCBCT
T ss_pred -----CCCEEEECCccCCH--HHHhcCHHHHHHHHHHHHHHHHHHHHH----cC-CeEEEechHHeECCC-C--CCCCCC
Confidence 68999999997532 223467788999999999999888765 33 499999997543222 1 123444
Q ss_pred ccCCCcchhhHHhHHHHHHHHHHHH
Q psy13409 174 EKGYSATGAYGRSKLANILFTTELA 198 (330)
Q Consensus 174 ~~~~~~~~~Y~asK~a~~~~~~~la 198 (330)
..+..+...|+.+|++.+.+++.++
T Consensus 128 ~~~~~~~~~Y~~sK~~~E~~~~~~~ 152 (292)
T 1vl0_A 128 FDEVNPQSAYGKTKLEGENFVKALN 152 (292)
T ss_dssp TSCCCCCSHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCccHHHHHHHHHHHHHHhhC
Confidence 4445567789999999999887653
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=8.9e-17 Score=165.29 Aligned_cols=228 Identities=11% Similarity=-0.007 Sum_probs=154.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHC-CCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHH-HHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKR-GARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKS-VRKCAQ 91 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~-G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~s-i~~l~~ 91 (330)
++++++|||||+|+||++++++|+++ |++|++++|+.....+.. ...++.++.+|+++.++ ++.+++
T Consensus 313 ~~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~~~~~~-----------~~~~v~~v~~Dl~d~~~~~~~~~~ 381 (660)
T 1z7e_A 313 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL-----------NHPHFHFVEGDISIHSEWIEYHVK 381 (660)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCTTTGGGT-----------TCTTEEEEECCTTTCHHHHHHHHH
T ss_pred ccCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCchhhhhhc-----------cCCceEEEECCCCCcHHHHHHhhc
Confidence 57899999999999999999999998 899999999875432210 23578899999999765 555554
Q ss_pred HHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccc
Q psy13409 92 EILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDI 171 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~ 171 (330)
.+|++||+||..... ...++++..+++|+.++.++++++.+ .+ +++|++||... ++.... .++
T Consensus 382 -------~~D~Vih~Aa~~~~~--~~~~~~~~~~~~Nv~gt~~ll~aa~~----~~-~r~V~~SS~~v-yg~~~~--~~~ 444 (660)
T 1z7e_A 382 -------KCDVVLPLVAIATPI--EYTRNPLRVFELDFEENLRIIRYCVK----YR-KRIIFPSTSEV-YGMCSD--KYF 444 (660)
T ss_dssp -------HCSEEEECCCCCCTH--HHHHSHHHHHHHHTHHHHHHHHHHHH----TT-CEEEEECCGGG-GBTCCS--SSB
T ss_pred -------CCCEEEECceecCcc--ccccCHHHHHHhhhHHHHHHHHHHHH----hC-CEEEEEecHHH-cCCCCC--ccc
Confidence 479999999976432 12345678899999998888777644 34 89999999654 332111 112
Q ss_pred ccccC-------CCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccc
Q psy13409 172 NLEKG-------YSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYC 244 (330)
Q Consensus 172 ~~~~~-------~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
+...+ ..+...|+.+|++.+.+++.++.+
T Consensus 445 ~E~~~~~~~~p~~~p~~~Y~~sK~~~E~~~~~~~~~-------------------------------------------- 480 (660)
T 1z7e_A 445 DEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEK-------------------------------------------- 480 (660)
T ss_dssp CTTTCCEEECCTTCTTHHHHHHHHHHHHHHHHHHHH--------------------------------------------
T ss_pred CCCccccccCcccCCCCCcHHHHHHHHHHHHHHHHH--------------------------------------------
Confidence 22111 134558999999999999998865
Q ss_pred cccccCCCCCCCCceeEEEeeCcccccCcccccC-----CC---chhhHHHHH--Hh---hh----hhccChHHHHHHHH
Q psy13409 245 KNVLFHPPGANITNVNTYAVHPGVVDTELSRHFD-----SI---IPGTAWLYQ--RV---GG----LFIKSPLQGAQTTL 307 (330)
Q Consensus 245 ~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~-----~~---~~~~~~~~~--~~---~~----~~~~~~~e~a~~~~ 307 (330)
.|++++.|.||.|-++...... .. ......... ++ +. ..+..++|+|++++
T Consensus 481 ------------~gi~~~ilRpg~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~ai~ 548 (660)
T 1z7e_A 481 ------------EGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALY 548 (660)
T ss_dssp ------------HCCCEEEEEECSEESTTSSCHHHHTTTCSCHHHHHHHHHHHTCCEEEEGGGCCEEECEEHHHHHHHHH
T ss_pred ------------cCCCEEEECCCcccCCCccccccccccccchHHHHHHHHHcCCCcEEeCCCCeEEEEEEHHHHHHHHH
Confidence 3688999999999887643210 00 011111111 00 11 11456999999999
Q ss_pred HhhccccccccCceecccC
Q psy13409 308 YCALDKKCERETGLYYAKA 326 (330)
Q Consensus 308 ~l~~~~~~~~~~G~~~~~~ 326 (330)
+++..+. .+.+|+.|+-.
T Consensus 549 ~~l~~~~-~~~~g~~~ni~ 566 (660)
T 1z7e_A 549 RIIENAG-NRCDGEIINIG 566 (660)
T ss_dssp HHHHCGG-GTTTTEEEEEC
T ss_pred HHHhCcc-ccCCCeEEEEC
Confidence 9986543 23567776644
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.6e-18 Score=156.83 Aligned_cols=215 Identities=13% Similarity=0.006 Sum_probs=137.9
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
+++++++|||||+|+||++++++|+++|++|++++|+........+.+. ......++.++.+|++
T Consensus 4 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~~~~Dl~----------- 68 (321)
T 3vps_A 4 NTLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTG----KFLEKPVLELEERDLS----------- 68 (321)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSSCCSSCCTTSS----EEECSCGGGCCHHHHT-----------
T ss_pred ccCCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcccccchhhhh----hhccCCCeeEEeCccc-----------
Confidence 4678999999999999999999999999999999998651000000000 0001233445555554
Q ss_pred HHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccc
Q psy13409 93 ILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDIN 172 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~ 172 (330)
.+|++||+||..... ...++....++ |+.++.++++++.+ .+.+++|++||... ++.. ...+++
T Consensus 69 ------~~d~vi~~a~~~~~~--~~~~~~~~~~~-n~~~~~~ll~a~~~----~~v~~~v~~SS~~v-~~~~--~~~~~~ 132 (321)
T 3vps_A 69 ------DVRLVYHLASHKSVP--RSFKQPLDYLD-NVDSGRHLLALCTS----VGVPKVVVGSTCEV-YGQA--DTLPTP 132 (321)
T ss_dssp ------TEEEEEECCCCCCHH--HHTTSTTTTHH-HHHHHHHHHHHHHH----HTCCEEEEEEEGGG-GCSC--SSSSBC
T ss_pred ------cCCEEEECCccCChH--HHHhCHHHHHH-HHHHHHHHHHHHHH----cCCCeEEEecCHHH-hCCC--CCCCCC
Confidence 689999999976421 11122334556 99997777776643 44579999999764 3321 223445
Q ss_pred cccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCC
Q psy13409 173 LEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPP 252 (330)
Q Consensus 173 ~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (330)
...+..+...|+.+|++.+.+++.++.+
T Consensus 133 E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---------------------------------------------------- 160 (321)
T 3vps_A 133 EDSPLSPRSPYAASKVGLEMVAGAHQRA---------------------------------------------------- 160 (321)
T ss_dssp TTSCCCCCSHHHHHHHHHHHHHHHHHHS----------------------------------------------------
T ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHH----------------------------------------------------
Confidence 5555667789999999999999988764
Q ss_pred CCCCCce-eEEEeeCcccccCcccccCCCchhhHHHHH--Hh---h----hhhccChHHHHHHHHHhhcccc
Q psy13409 253 GANITNV-NTYAVHPGVVDTELSRHFDSIIPGTAWLYQ--RV---G----GLFIKSPLQGAQTTLYCALDKK 314 (330)
Q Consensus 253 ~~~~~~i-~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~--~~---~----~~~~~~~~e~a~~~~~l~~~~~ 314 (330)
.++ ++..+.||.|-++................. ++ + ...+..++|+|+++++++..+.
T Consensus 161 ----~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~ 228 (321)
T 3vps_A 161 ----SVAPEVGIVRFFNVYGPGERPDALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVVDKLVALANRPL 228 (321)
T ss_dssp ----SSSCEEEEEEECEEECTTCCTTSHHHHHHHHHHHHSEEEEETTSCCEECEEEHHHHHHHHHHGGGSCC
T ss_pred ----cCCCceEEEEeccccCcCCCCCChHHHHHHHHHcCCCeEEeCCCCceEceEEHHHHHHHHHHHHhcCC
Confidence 578 999999999987754431101111111111 00 1 1114579999999999997653
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-16 Score=146.49 Aligned_cols=139 Identities=23% Similarity=0.302 Sum_probs=109.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
+++|||||+|+||++++++|+++|++|++++|. .+|++|.++++++++..
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~---------------------------~~D~~d~~~~~~~~~~~--- 55 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEEYDIYPFDKK---------------------------LLDITNISQVQQVVQEI--- 55 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTTEEEEEECTT---------------------------TSCTTCHHHHHHHHHHH---
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCEEEEeccc---------------------------ccCCCCHHHHHHHHHhc---
Confidence 389999999999999999999999999999982 27999999999888765
Q ss_pred CCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccccC
Q psy13409 97 ESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKG 176 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~ 176 (330)
.+|++||+||.... ....++++..+++|+.++.++++++.+ .+ .++|++||... ++.. ...++++..+
T Consensus 56 --~~d~vi~~a~~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~v~~SS~~v-y~~~--~~~~~~E~~~ 123 (287)
T 3sc6_A 56 --RPHIIIHCAAYTKV--DQAEKERDLAYVINAIGARNVAVASQL----VG-AKLVYISTDYV-FQGD--RPEGYDEFHN 123 (287)
T ss_dssp --CCSEEEECCCCCCH--HHHTTCHHHHHHHHTHHHHHHHHHHHH----HT-CEEEEEEEGGG-SCCC--CSSCBCTTSC
T ss_pred --CCCEEEECCcccCh--HHHhcCHHHHHHHHHHHHHHHHHHHHH----cC-CeEEEEchhhh-cCCC--CCCCCCCCCC
Confidence 68999999997642 122356788899999998888887744 33 48999999754 3321 1234555556
Q ss_pred CCcchhhHHhHHHHHHHHHHH
Q psy13409 177 YSATGAYGRSKLANILFTTEL 197 (330)
Q Consensus 177 ~~~~~~Y~asK~a~~~~~~~l 197 (330)
..+...|+.+|.+.+.+++.+
T Consensus 124 ~~p~~~Y~~sK~~~E~~~~~~ 144 (287)
T 3sc6_A 124 PAPINIYGASKYAGEQFVKEL 144 (287)
T ss_dssp CCCCSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 677789999999999888765
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.6e-16 Score=155.01 Aligned_cols=230 Identities=13% Similarity=0.036 Sum_probs=150.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhH---HHHHHHHHHHhhc---ccCCCCeEEEEEccCCCHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEK---AETAADDIRTSLK---DVKDAGEVVIRQLDLSSLKSVRK 88 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~---l~~~~~~l~~~~~---~~~~~~~v~~i~~Dls~~~si~~ 88 (330)
..++||||||+|+||.+++++|.+.|++|+++.|+... ..++.+.+..... ......++.++.+|+++++++.
T Consensus 149 ~~~~VLVTGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~- 227 (508)
T 4f6l_B 149 PLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV- 227 (508)
T ss_dssp CCEEEEESCTTSHHHHHHHHHTBTTEEEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSCC-
T ss_pred CCCeEEEECCccchHHHHHHHHHhcCCEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccCC-
Confidence 35799999999999999999999999999999998763 3333333322100 0002568999999999977765
Q ss_pred HHHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCC--
Q psy13409 89 CAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSM-- 166 (330)
Q Consensus 89 l~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~-- 166 (330)
....+|+|||+|+... ....++..+++|+.++.++++.+.+ ..+++|++||... |....
T Consensus 228 -------~~~~~D~Vih~Aa~~~-----~~~~~~~~~~~Nv~gt~~ll~~a~~-----~~~~~v~iSS~~v--G~~~~~~ 288 (508)
T 4f6l_B 228 -------LPENMDTIIHAGARTD-----HFGDDDEFEKVNVQGTVDVIRLAQQ-----HHARLIYVSTISV--GTYFDID 288 (508)
T ss_dssp -------CSSCCSEEEECCCC-------------CCHHHHHHHHHHHHHHHHT-----TTCEEEEEEESCT--TSEECTT
T ss_pred -------CccCCCEEEECCceec-----CCCCHHHHhhhHHHHHHHHHHHHHh-----CCCcEEEeCChhh--ccCCccC
Confidence 3467999999999764 2245677888999998888887654 3589999999876 32110
Q ss_pred -cccccccccC---CCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcc
Q psy13409 167 -HFEDINLEKG---YSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNH 242 (330)
Q Consensus 167 -~~~~~~~~~~---~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (330)
...+++...+ ......|+.+|.+.+.+++.++.
T Consensus 289 ~~~~~~~E~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~------------------------------------------- 325 (508)
T 4f6l_B 289 TEDVTFSEADVYKGQLLTSPYTRSKFYSELKVLEAVN------------------------------------------- 325 (508)
T ss_dssp CSCCEECTTCSCSSBCCCSHHHHHHHHHHHHHHHHHH-------------------------------------------
T ss_pred CcCcccccccccccccCCCcHHHHHHHHHHHHHHHHH-------------------------------------------
Confidence 1112222222 23567899999999998887542
Q ss_pred cccccccCCCCCCCCceeEEEeeCcccccCcccccCCC---chhhHHHHHHh------------hhhhccChHHHHHHHH
Q psy13409 243 YCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSI---IPGTAWLYQRV------------GGLFIKSPLQGAQTTL 307 (330)
Q Consensus 243 ~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~---~~~~~~~~~~~------------~~~~~~~~~e~a~~~~ 307 (330)
.|++++.+.||.|-++........ ......+.... ....+..++|+|++++
T Consensus 326 --------------~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~v~v~DvA~ai~ 391 (508)
T 4f6l_B 326 --------------NGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGVSMAEMPVDFSFVDTTARQIV 391 (508)
T ss_dssp --------------TTCEEEEEEECCEESCSSSCCCCTTCTTCHHHHHHHHHTTCSEEETTGGGSEEECEEHHHHHHHHH
T ss_pred --------------cCCCEEEEecceeccCCCCCcccCCcchHHHHHHHHHHHHcCCCCCCccCceEEEEcHHHHHHHHH
Confidence 579999999999987754433111 00111111111 1111456899999999
Q ss_pred HhhccccccccCceeccc
Q psy13409 308 YCALDKKCERETGLYYAK 325 (330)
Q Consensus 308 ~l~~~~~~~~~~G~~~~~ 325 (330)
+++..+. .|..|+-
T Consensus 392 ~~~~~~~----~~~~~nl 405 (508)
T 4f6l_B 392 ALAQVNT----PQIIYHV 405 (508)
T ss_dssp HHTTBCC----SCSEEEE
T ss_pred HHHhCCC----CCCEEEe
Confidence 9986643 4555543
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.7e-17 Score=150.31 Aligned_cols=142 Identities=15% Similarity=0.067 Sum_probs=104.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
+++++|||| +|+||++++++|+++|++|++++|+.+. ...++.++.+|++|.++++++++
T Consensus 2 ~~~~ilVtG-aG~iG~~l~~~L~~~g~~V~~~~r~~~~----------------~~~~~~~~~~Dl~d~~~~~~~~~--- 61 (286)
T 3gpi_A 2 SLSKILIAG-CGDLGLELARRLTAQGHEVTGLRRSAQP----------------MPAGVQTLIADVTRPDTLASIVH--- 61 (286)
T ss_dssp CCCCEEEEC-CSHHHHHHHHHHHHTTCCEEEEECTTSC----------------CCTTCCEEECCTTCGGGCTTGGG---
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCccc----------------cccCCceEEccCCChHHHHHhhc---
Confidence 467899999 5999999999999999999999998754 13567889999999988777654
Q ss_pred hcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccc
Q psy13409 95 DNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLE 174 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~ 174 (330)
+++|++||+||.. ..+.+..+++|+.++.++++++. +.+.+++|++||.. .++.. ...++++.
T Consensus 62 ---~~~d~vih~a~~~-------~~~~~~~~~~n~~~~~~ll~a~~----~~~~~~~v~~SS~~-vyg~~--~~~~~~E~ 124 (286)
T 3gpi_A 62 ---LRPEILVYCVAAS-------EYSDEHYRLSYVEGLRNTLSALE----GAPLQHVFFVSSTG-VYGQE--VEEWLDED 124 (286)
T ss_dssp ---GCCSEEEECHHHH-------HHC-----CCSHHHHHHHHHHTT----TSCCCEEEEEEEGG-GCCCC--CSSEECTT
T ss_pred ---CCCCEEEEeCCCC-------CCCHHHHHHHHHHHHHHHHHHHh----hCCCCEEEEEcccE-EEcCC--CCCCCCCC
Confidence 3589999999863 24456778889999777776653 45558999999975 44432 12234445
Q ss_pred cCCCcchhhHHhHHHHHHH
Q psy13409 175 KGYSATGAYGRSKLANILF 193 (330)
Q Consensus 175 ~~~~~~~~Y~asK~a~~~~ 193 (330)
.+..+...|+.+|.+.+.+
T Consensus 125 ~~~~p~~~Y~~sK~~~E~~ 143 (286)
T 3gpi_A 125 TPPIAKDFSGKRMLEAEAL 143 (286)
T ss_dssp SCCCCCSHHHHHHHHHHHH
T ss_pred CCCCCCChhhHHHHHHHHH
Confidence 5556678999999997665
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.3e-16 Score=143.64 Aligned_cols=142 Identities=16% Similarity=0.073 Sum_probs=107.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
+++|||||+|+||.+++++|+ +|++|++++|+.. ++.+|+++.++++++++..
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~-----------------------~~~~D~~d~~~~~~~~~~~--- 53 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PVGNLIALDVHSK-----------------------EFCGDFSNPKGVAETVRKL--- 53 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCS-----------------------SSCCCTTCHHHHHHHHHHH---
T ss_pred CeEEEECCCCHHHHHHHHHhh-cCCeEEEeccccc-----------------------cccccCCCHHHHHHHHHhc---
Confidence 379999999999999999999 8999999999751 2568999999988887764
Q ss_pred CCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccccC
Q psy13409 97 ESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKG 176 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~ 176 (330)
++|++||+||..... ...++++..+++|+.++.++++++.+ .+ .++|++||... ++... ..++++..+
T Consensus 54 --~~d~vih~a~~~~~~--~~~~~~~~~~~~n~~~~~~l~~a~~~----~~-~~~v~~SS~~v-y~~~~--~~~~~E~~~ 121 (299)
T 1n2s_A 54 --RPDVIVNAAAHTAVD--KAESEPELAQLLNATSVEAIAKAANE----TG-AWVVHYSTDYV-FPGTG--DIPWQETDA 121 (299)
T ss_dssp --CCSEEEECCCCCCHH--HHTTCHHHHHHHHTHHHHHHHHHHTT----TT-CEEEEEEEGGG-SCCCT--TCCBCTTSC
T ss_pred --CCCEEEECcccCCHh--hhhcCHHHHHHHHHHHHHHHHHHHHH----cC-CcEEEEecccE-EeCCC--CCCCCCCCC
Confidence 589999999965321 12356678899999998888877632 33 48999999754 33211 123444444
Q ss_pred CCcchhhHHhHHHHHHHHHHH
Q psy13409 177 YSATGAYGRSKLANILFTTEL 197 (330)
Q Consensus 177 ~~~~~~Y~asK~a~~~~~~~l 197 (330)
..+...|+.+|++.+.+++.+
T Consensus 122 ~~p~~~Y~~sK~~~E~~~~~~ 142 (299)
T 1n2s_A 122 TSPLNVYGKTKLAGEKALQDN 142 (299)
T ss_dssp CCCSSHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHh
Confidence 556779999999998887754
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=99.65 E-value=3.8e-16 Score=143.17 Aligned_cols=191 Identities=16% Similarity=0.072 Sum_probs=134.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHC--CCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKR--GARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~--G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
|++|||||+|+||++++++|+++ |++|++++|+.++..... ..++.++.+|++|.+++.++++
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~------------~~~~~~~~~D~~d~~~l~~~~~--- 65 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLA------------DQGVEVRHGDYNQPESLQKAFA--- 65 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHH------------HTTCEEEECCTTCHHHHHHHTT---
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHh------------hcCCeEEEeccCCHHHHHHHHh---
Confidence 57999999999999999999998 999999999876544321 1246788999999988877654
Q ss_pred hcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccc
Q psy13409 95 DNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLE 174 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~ 174 (330)
.+|++||+||... . + ++|+.+..++++++ .+.+.+++|++||.... .
T Consensus 66 ----~~d~vi~~a~~~~-----~-~------~~n~~~~~~l~~a~----~~~~~~~~v~~Ss~~~~-~------------ 112 (287)
T 2jl1_A 66 ----GVSKLLFISGPHY-----D-N------TLLIVQHANVVKAA----RDAGVKHIAYTGYAFAE-E------------ 112 (287)
T ss_dssp ----TCSEEEECCCCCS-----C-H------HHHHHHHHHHHHHH----HHTTCSEEEEEEETTGG-G------------
T ss_pred ----cCCEEEEcCCCCc-----C-c------hHHHHHHHHHHHHH----HHcCCCEEEEECCCCCC-C------------
Confidence 4799999999531 1 1 56888877766665 34455799999997642 1
Q ss_pred cCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCCC
Q psy13409 175 KGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGA 254 (330)
Q Consensus 175 ~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (330)
....|+.+|.+.+.+++ .
T Consensus 113 ----~~~~y~~~K~~~E~~~~------~---------------------------------------------------- 130 (287)
T 2jl1_A 113 ----SIIPLAHVHLATEYAIR------T---------------------------------------------------- 130 (287)
T ss_dssp ----CCSTHHHHHHHHHHHHH------H----------------------------------------------------
T ss_pred ----CCCchHHHHHHHHHHHH------H----------------------------------------------------
Confidence 11379999999888764 1
Q ss_pred CCCceeEEEeeCcccccCcccccCCCchhhHHHHH-------HhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 255 NITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQ-------RVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 255 ~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
.|++++.|.||++.++...... ...... .-+...+..++|+|++++.++..+. .+|+.|+-..
T Consensus 131 --~~~~~~ilrp~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~~~~~~---~~g~~~~i~~ 200 (287)
T 2jl1_A 131 --TNIPYTFLRNALYTDFFVNEGL-----RASTESGAIVTNAGSGIVNSVTRNELALAAATVLTEEG---HENKTYNLVS 200 (287)
T ss_dssp --TTCCEEEEEECCBHHHHSSGGG-----HHHHHHTEEEESCTTCCBCCBCHHHHHHHHHHHHTSSS---CTTEEEEECC
T ss_pred --cCCCeEEEECCEeccccchhhH-----HHHhhCCceeccCCCCccCccCHHHHHHHHHHHhcCCC---CCCcEEEecC
Confidence 4788999999998766411110 000100 0112236799999999999986542 3676665443
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=99.63 E-value=7.7e-16 Score=142.38 Aligned_cols=205 Identities=13% Similarity=-0.032 Sum_probs=134.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCC-CEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRG-ARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G-~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.|+++||||+|+||++++++|+++| ++|++++|+.++... +.+.. ..+.++.+|++|.+++.++++
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~--~~l~~--------~~~~~~~~D~~d~~~l~~~~~--- 71 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAA--KELRL--------QGAEVVQGDQDDQVIMELALN--- 71 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHH--HHHHH--------TTCEEEECCTTCHHHHHHHHT---
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHH--HHHHH--------CCCEEEEecCCCHHHHHHHHh---
Confidence 5899999999999999999999999 999999998765321 22221 246788999999998887764
Q ss_pred hcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccc
Q psy13409 95 DNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLE 174 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~ 174 (330)
.+|++||++|..... ....|+.+ .+.+++.+.+.+.++||++|| .+..+.+
T Consensus 72 ----~~d~vi~~a~~~~~~----------~~~~~~~~----~~~~~~aa~~~gv~~iv~~S~-~~~~~~~---------- 122 (299)
T 2wm3_A 72 ----GAYATFIVTNYWESC----------SQEQEVKQ----GKLLADLARRLGLHYVVYSGL-ENIKKLT---------- 122 (299)
T ss_dssp ----TCSEEEECCCHHHHT----------CHHHHHHH----HHHHHHHHHHHTCSEEEECCC-CCHHHHT----------
T ss_pred ----cCCEEEEeCCCCccc----------cchHHHHH----HHHHHHHHHHcCCCEEEEEcC-ccccccC----------
Confidence 379999999853110 12334444 555566666666789999555 3333210
Q ss_pred cCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCCC
Q psy13409 175 KGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGA 254 (330)
Q Consensus 175 ~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (330)
.......|..+|.+++.+++.
T Consensus 123 -~~~~~~~y~~sK~~~e~~~~~---------------------------------------------------------- 143 (299)
T 2wm3_A 123 -AGRLAAAHFDGKGEVEEYFRD---------------------------------------------------------- 143 (299)
T ss_dssp -TTSCCCHHHHHHHHHHHHHHH----------------------------------------------------------
T ss_pred -CCcccCchhhHHHHHHHHHHH----------------------------------------------------------
Confidence 001245799999998877652
Q ss_pred CCCceeEEEeeCcccccCcccccCCC--chhhH-HHHH--HhhhhhccChHHHHHHHHHhhccccccccCceeccc
Q psy13409 255 NITNVNTYAVHPGVVDTELSRHFDSI--IPGTA-WLYQ--RVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAK 325 (330)
Q Consensus 255 ~~~~i~v~~v~pG~v~t~~~~~~~~~--~~~~~-~~~~--~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~ 325 (330)
.|++++.|.||++.+++...+... ..... .... .-....+.+++|+|+.++.++..+. ...|+.|.-
T Consensus 144 --~gi~~~ilrp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~--~~~g~~~~~ 215 (299)
T 2wm3_A 144 --IGVPMTSVRLPCYFENLLSHFLPQKAPDGKSYLLSLPTGDVPMDGMSVSDLGPVVLSLLKMPE--KYVGQNIGL 215 (299)
T ss_dssp --HTCCEEEEECCEEGGGGGTTTCCEECTTSSSEEECCCCTTSCEEEECGGGHHHHHHHHHHSHH--HHTTCEEEC
T ss_pred --CCCCEEEEeecHHhhhchhhcCCcccCCCCEEEEEecCCCCccceecHHHHHHHHHHHHcChh--hhCCeEEEe
Confidence 368899999999988765422111 00000 0000 1112236799999999999986542 125665543
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=4.1e-15 Score=141.75 Aligned_cols=134 Identities=17% Similarity=0.109 Sum_probs=97.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEcc-CCCHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLD-LSSLKSVRKCAQE 92 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~D-ls~~~si~~l~~~ 92 (330)
+++|+++||||+|+||++++++|+++|++|++++|+.+... .+.+.. ..++.++.+| ++|.+++.++++
T Consensus 3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~--~~~l~~-------~~~v~~v~~D~l~d~~~l~~~~~- 72 (352)
T 1xgk_A 3 QQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLI--AEELQA-------IPNVTLFQGPLLNNVPLMDTLFE- 72 (352)
T ss_dssp CCCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHH--HHHHHT-------STTEEEEESCCTTCHHHHHHHHT-
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhh--HHHHhh-------cCCcEEEECCccCCHHHHHHHHh-
Confidence 35788999999999999999999999999999999876542 122221 2367889999 999998887764
Q ss_pred HHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCC-cccCCCCCcccc
Q psy13409 93 ILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLA-HTWGDGSMHFED 170 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~-~~~~~~~~~~~~ 170 (330)
.+|++|||++... . +.|..+ +.+++.+.+.+ .+++|++||.. +..+.
T Consensus 73 ------~~d~Vi~~a~~~~------~-------~~~~~~-----~~l~~aa~~~g~v~~~V~~SS~~~~~~~~------- 121 (352)
T 1xgk_A 73 ------GAHLAFINTTSQA------G-------DEIAIG-----KDLADAAKRAGTIQHYIYSSMPDHSLYGP------- 121 (352)
T ss_dssp ------TCSEEEECCCSTT------S-------CHHHHH-----HHHHHHHHHHSCCSEEEEEECCCGGGTSS-------
T ss_pred ------cCCEEEEcCCCCC------c-------HHHHHH-----HHHHHHHHHcCCccEEEEeCCccccccCC-------
Confidence 3699999997541 0 123333 44555555565 68999999976 23321
Q ss_pred cccccCCCcchhhHHhHHHHHHHHH
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTT 195 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~ 195 (330)
.....|+.+|++.+.+++
T Consensus 122 -------~~~~~y~~sK~~~E~~~~ 139 (352)
T 1xgk_A 122 -------WPAVPMWAPKFTVENYVR 139 (352)
T ss_dssp -------CCCCTTTHHHHHHHHHHH
T ss_pred -------CCCccHHHHHHHHHHHHH
Confidence 234679999999887775
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=4.7e-16 Score=142.30 Aligned_cols=193 Identities=12% Similarity=0.113 Sum_probs=127.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHC--CCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 18 TAIVTGSNTGIGKCTANELAKR--GARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~--G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
+++||||+|+||++++++|+++ |++|++++|+.++..... . .++.++.+|++|.++++++++
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~----~--------~~~~~~~~D~~d~~~~~~~~~---- 64 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALA----A--------QGITVRQADYGDEAALTSALQ---- 64 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHH----H--------TTCEEEECCTTCHHHHHHHTT----
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhh----c--------CCCeEEEcCCCCHHHHHHHHh----
Confidence 4899999999999999999998 999999999876543321 1 246788999999988877654
Q ss_pred cCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccccccc
Q psy13409 96 NESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEK 175 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~ 175 (330)
.+|++||+||... ..|+.+. +.+++.+.+.+.+++|++||.... .
T Consensus 65 ---~~d~vi~~a~~~~--------------~~~~~~~----~~l~~a~~~~~~~~~v~~Ss~~~~-~------------- 109 (286)
T 2zcu_A 65 ---GVEKLLLISSSEV--------------GQRAPQH----RNVINAAKAAGVKFIAYTSLLHAD-T------------- 109 (286)
T ss_dssp ---TCSEEEECC----------------------CHH----HHHHHHHHHHTCCEEEEEEETTTT-T-------------
T ss_pred ---CCCEEEEeCCCCc--------------hHHHHHH----HHHHHHHHHcCCCEEEEECCCCCC-C-------------
Confidence 4799999998531 0245554 444455555566899999997642 1
Q ss_pred CCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCCCC
Q psy13409 176 GYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGAN 255 (330)
Q Consensus 176 ~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (330)
....|+.+|.+.+.+++.
T Consensus 110 ---~~~~y~~sK~~~e~~~~~----------------------------------------------------------- 127 (286)
T 2zcu_A 110 ---SPLGLADEHIETEKMLAD----------------------------------------------------------- 127 (286)
T ss_dssp ---CCSTTHHHHHHHHHHHHH-----------------------------------------------------------
T ss_pred ---CcchhHHHHHHHHHHHHH-----------------------------------------------------------
Confidence 123799999998887642
Q ss_pred CCceeEEEeeCcccccCcccccCCCchhhHH-HHHHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 256 ITNVNTYAVHPGVVDTELSRHFDSIIPGTAW-LYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 256 ~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
.+++++.|.||++.++.............. ....-....+..++|+|+++++++..+. .+|+.|+-..
T Consensus 128 -~~~~~~ilrp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~~~~~~---~~g~~~~i~~ 196 (286)
T 2zcu_A 128 -SGIVYTLLRNGWYSENYLASAPAALEHGVFIGAAGDGKIASATRADYAAAAARVISEAG---HEGKVYELAG 196 (286)
T ss_dssp -HCSEEEEEEECCBHHHHHTTHHHHHHHTEEEESCTTCCBCCBCHHHHHHHHHHHHHSSS---CTTCEEEECC
T ss_pred -cCCCeEEEeChHHhhhhHHHhHHhhcCCceeccCCCCccccccHHHHHHHHHHHhcCCC---CCCceEEEeC
Confidence 368899999999877643111000000000 0000112236799999999999986643 2666665443
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-14 Score=133.89 Aligned_cols=107 Identities=19% Similarity=0.189 Sum_probs=82.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHC-CCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKR-GARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~-G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
+++|||||+|+||++++++|++. |++|+++.|+.++.... ...++.++.+|++|.++++++++
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~------------~~~~v~~~~~D~~d~~~l~~~~~---- 64 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDD------------WRGKVSVRQLDYFNQESMVEAFK---- 64 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGG------------GBTTBEEEECCTTCHHHHHHHTT----
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHh------------hhCCCEEEEcCCCCHHHHHHHHh----
Confidence 36999999999999999999998 99999999998753321 13468899999999988877764
Q ss_pred cCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCC
Q psy13409 96 NESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLA 158 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~ 158 (330)
.+|++||+||..... ..|+.+ ++.+++.+.+.+.++||++||..
T Consensus 65 ---~~d~vi~~a~~~~~~------------~~~~~~----~~~l~~aa~~~gv~~iv~~Ss~~ 108 (289)
T 3e48_A 65 ---GMDTVVFIPSIIHPS------------FKRIPE----VENLVYAAKQSGVAHIIFIGYYA 108 (289)
T ss_dssp ---TCSEEEECCCCCCSH------------HHHHHH----HHHHHHHHHHTTCCEEEEEEESC
T ss_pred ---CCCEEEEeCCCCccc------------hhhHHH----HHHHHHHHHHcCCCEEEEEcccC
Confidence 579999999865321 124444 45566666666668999999954
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-14 Score=133.39 Aligned_cols=200 Identities=15% Similarity=0.034 Sum_probs=133.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
+++||||| |+||.+++++|+++|++|++++|+..+..... ..++.++.+|+++.+
T Consensus 6 ~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~------------~~~~~~~~~D~~d~~------------ 60 (286)
T 3ius_A 6 GTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIR------------ASGAEPLLWPGEEPS------------ 60 (286)
T ss_dssp CEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHH------------HTTEEEEESSSSCCC------------
T ss_pred CcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHh------------hCCCeEEEecccccc------------
Confidence 78999998 99999999999999999999999987654432 235889999999832
Q ss_pred CCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhh--hCCCeEEEEcCCCcccCCCCCcccccccc
Q psy13409 97 ESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIK--SAPARIINLSSLAHTWGDGSMHFEDINLE 174 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~--~~~g~IV~iSS~~~~~~~~~~~~~~~~~~ 174 (330)
...+|++||+|+..... +. ..+.+++.+.+ .+.+++|++||.. .++... ..+++..
T Consensus 61 ~~~~d~vi~~a~~~~~~-----~~--------------~~~~l~~a~~~~~~~~~~~v~~Ss~~-vyg~~~--~~~~~E~ 118 (286)
T 3ius_A 61 LDGVTHLLISTAPDSGG-----DP--------------VLAALGDQIAARAAQFRWVGYLSTTA-VYGDHD--GAWVDET 118 (286)
T ss_dssp CTTCCEEEECCCCBTTB-----CH--------------HHHHHHHHHHHTGGGCSEEEEEEEGG-GGCCCT--TCEECTT
T ss_pred cCCCCEEEECCCccccc-----cH--------------HHHHHHHHHHhhcCCceEEEEeecce-ecCCCC--CCCcCCC
Confidence 45689999999965321 11 02334444444 4457999999964 444321 2234455
Q ss_pred cCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCCC
Q psy13409 175 KGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGA 254 (330)
Q Consensus 175 ~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (330)
.+..+...|+.+|.+.+.+++.+
T Consensus 119 ~~~~p~~~Y~~sK~~~E~~~~~~--------------------------------------------------------- 141 (286)
T 3ius_A 119 TPLTPTAARGRWRVMAEQQWQAV--------------------------------------------------------- 141 (286)
T ss_dssp SCCCCCSHHHHHHHHHHHHHHHS---------------------------------------------------------
T ss_pred CCCCCCCHHHHHHHHHHHHHHhh---------------------------------------------------------
Confidence 55666778999999988877654
Q ss_pred CCCceeEEEeeCcccccCcccccCCCchhhHH-HHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 255 NITNVNTYAVHPGVVDTELSRHFDSIIPGTAW-LYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 255 ~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
.++++..+.||.|-.+.............. ....-....+..++|+|++++.++..+. .|..|+-.
T Consensus 142 --~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~----~g~~~~i~ 208 (286)
T 3ius_A 142 --PNLPLHVFRLAGIYGPGRGPFSKLGKGGIRRIIKPGQVFSRIHVEDIAQVLAASMARPD----PGAVYNVC 208 (286)
T ss_dssp --TTCCEEEEEECEEEBTTBSSSTTSSSSCCCEEECTTCCBCEEEHHHHHHHHHHHHHSCC----TTCEEEEC
T ss_pred --cCCCEEEEeccceECCCchHHHHHhcCCccccCCCCcccceEEHHHHHHHHHHHHhCCC----CCCEEEEe
Confidence 257888999999877653322111100000 0000011125678999999999997653 46565544
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=134.28 Aligned_cols=191 Identities=14% Similarity=0.103 Sum_probs=122.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh-------hHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHH
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL-------EKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRK 88 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~-------~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~ 88 (330)
+++++||||+|+||+++++.|+++|++|++++|+. ++.+.+ +.+.. ..+.++.+|++|.+++.+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~-~~l~~--------~~v~~v~~D~~d~~~l~~ 72 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELI-DNYQS--------LGVILLEGDINDHETLVK 72 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHH-HHHHH--------TTCEEEECCTTCHHHHHH
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHH-HHHHh--------CCCEEEEeCCCCHHHHHH
Confidence 57899999999999999999999999999999986 443332 22221 247789999999988877
Q ss_pred HHHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCCc
Q psy13409 89 CAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 89 l~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~~ 167 (330)
+++ .+|++||++|... +.+. +.+++.+.+.+ .+++| .|..+....
T Consensus 73 ~~~-------~~d~vi~~a~~~~-----------------~~~~----~~l~~aa~~~g~v~~~v--~S~~g~~~~---- 118 (307)
T 2gas_A 73 AIK-------QVDIVICAAGRLL-----------------IEDQ----VKIIKAIKEAGNVKKFF--PSEFGLDVD---- 118 (307)
T ss_dssp HHT-------TCSEEEECSSSSC-----------------GGGH----HHHHHHHHHHCCCSEEE--CSCCSSCTT----
T ss_pred HHh-------CCCEEEECCcccc-----------------cccH----HHHHHHHHhcCCceEEe--ecccccCcc----
Confidence 765 4799999999642 1222 23344445555 56776 343332110
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
......+....| .+|++++.+++.
T Consensus 119 ----~~~~~~p~~~~y-~sK~~~e~~~~~--------------------------------------------------- 142 (307)
T 2gas_A 119 ----RHDAVEPVRQVF-EEKASIRRVIEA--------------------------------------------------- 142 (307)
T ss_dssp ----SCCCCTTHHHHH-HHHHHHHHHHHH---------------------------------------------------
T ss_pred ----cccCCCcchhHH-HHHHHHHHHHHH---------------------------------------------------
Confidence 000112345689 999998776541
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCCC----ch--hhHHHHHHhhhhhccChHHHHHHHHHhhcccc
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSI----IP--GTAWLYQRVGGLFIKSPLQGAQTTLYCALDKK 314 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~ 314 (330)
.+++++.|.||++.+.+...+... .. ........-....+.+++|+|+.++.++.++.
T Consensus 143 ---------~~i~~~~lrp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~ 206 (307)
T 2gas_A 143 ---------EGVPYTYLCCHAFTGYFLRNLAQLDATDPPRDKVVILGDGNVKGAYVTEADVGTFTIRAANDPN 206 (307)
T ss_dssp ---------HTCCBEEEECCEETTTTGGGTTCTTCSSCCSSEEEEETTSCSEEEEECHHHHHHHHHHHHTCGG
T ss_pred ---------cCCCeEEEEcceeeccccccccccccccCCCCeEEEecCCCcceEEeeHHHHHHHHHHHHcCcc
Confidence 367888899999887654322110 00 00000001112236799999999999997653
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-14 Score=136.24 Aligned_cols=195 Identities=11% Similarity=0.016 Sum_probs=126.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh----hHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL----EKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~----~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
++.+++|||||+|+||+++++.|++.|++|+++.|+. .+... .+.+. ..++.++.+|++|.+++.++
T Consensus 8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~-~~~l~--------~~~v~~~~~Dl~d~~~l~~~ 78 (346)
T 3i6i_A 8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKI-FKALE--------DKGAIIVYGLINEQEAMEKI 78 (346)
T ss_dssp ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHH-HHHHH--------HTTCEEEECCTTCHHHHHHH
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHH-HHHHH--------hCCcEEEEeecCCHHHHHHH
Confidence 4568999999999999999999999999999999976 23221 22222 34678899999999998888
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCCcc
Q psy13409 90 AQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~~~ 168 (330)
+++. .+|++||++|.. |+.+..++++++ .+.+ -.++|+ |+ .+..
T Consensus 79 ~~~~-----~~d~Vi~~a~~~-----------------n~~~~~~l~~aa----~~~g~v~~~v~-S~-~g~~------- 123 (346)
T 3i6i_A 79 LKEH-----EIDIVVSTVGGE-----------------SILDQIALVKAM----KAVGTIKRFLP-SE-FGHD------- 123 (346)
T ss_dssp HHHT-----TCCEEEECCCGG-----------------GGGGHHHHHHHH----HHHCCCSEEEC-SC-CSSC-------
T ss_pred HhhC-----CCCEEEECCchh-----------------hHHHHHHHHHHH----HHcCCceEEee-cc-cCCC-------
Confidence 7652 589999999862 566655555554 4444 456664 43 2211
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
.+...+..+...|+.+|.+++.+.+.
T Consensus 124 --~~e~~~~~p~~~y~~sK~~~e~~l~~---------------------------------------------------- 149 (346)
T 3i6i_A 124 --VNRADPVEPGLNMYREKRRVRQLVEE---------------------------------------------------- 149 (346)
T ss_dssp --TTTCCCCTTHHHHHHHHHHHHHHHHH----------------------------------------------------
T ss_pred --CCccCcCCCcchHHHHHHHHHHHHHH----------------------------------------------------
Confidence 12223345667899999997766542
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCc----hhhH--HHHHHhhhhhccChHHHHHHHHHhhcccc
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSII----PGTA--WLYQRVGGLFIKSPLQGAQTTLYCALDKK 314 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~e~a~~~~~l~~~~~ 314 (330)
.|+++..|.||++-..+........ .... .....-....+..++|+|+.++.++.++.
T Consensus 150 --------~g~~~tivrpg~~~g~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~~~Dva~~~~~~l~~~~ 213 (346)
T 3i6i_A 150 --------SGIPFTYICCNSIASWPYYNNIHPSEVLPPTDFFQIYGDGNVKAYFVAGTDIGKFTMKTVDDVR 213 (346)
T ss_dssp --------TTCCBEEEECCEESSCCCSCC-----CCCCSSCEEEETTSCCCEEEECHHHHHHHHHHHTTCGG
T ss_pred --------cCCCEEEEEecccccccCccccccccccCCCceEEEccCCCceEEecCHHHHHHHHHHHHhCcc
Confidence 3677888899888665432221100 0000 00001112237789999999999997753
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-13 Score=130.91 Aligned_cols=183 Identities=14% Similarity=0.036 Sum_probs=127.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
+++|||||+|+||++++++|+++|+ +|+..+|+ ++.++++++++.
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~-------------------------------~d~~~l~~~~~~--- 46 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ-------------------------------TKEEELESALLK--- 46 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTT-------------------------------CCHHHHHHHHHH---
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCC-------------------------------CCHHHHHHHhcc---
Confidence 4799999999999999999999998 77766553 566667776653
Q ss_pred cCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCC-eEEEEcCCCcccCCCCCcccccccc
Q psy13409 96 NESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPA-RIINLSSLAHTWGDGSMHFEDINLE 174 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g-~IV~iSS~~~~~~~~~~~~~~~~~~ 174 (330)
+|++||+||...+ ++....+++|+.++.++++++ .+.+.+ ++|++||....
T Consensus 47 ----~d~Vih~a~~~~~------~~~~~~~~~n~~~~~~l~~a~----~~~~~~~~~v~~Ss~~~~-------------- 98 (369)
T 3st7_A 47 ----ADFIVHLAGVNRP------EHDKEFSLGNVSYLDHVLDIL----TRNTKKPAILLSSSIQAT-------------- 98 (369)
T ss_dssp ----CSEEEECCCSBCT------TCSTTCSSSCCBHHHHHHHHH----TTCSSCCEEEEEEEGGGG--------------
T ss_pred ----CCEEEECCcCCCC------CCHHHHHHHHHHHHHHHHHHH----HHhCCCCeEEEeCchhhc--------------
Confidence 7999999997642 344556778999977776665 344434 89999997542
Q ss_pred cCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCCC
Q psy13409 175 KGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGA 254 (330)
Q Consensus 175 ~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (330)
....|+.+|++.+.+++.++++.
T Consensus 99 ----~~~~Y~~sK~~~E~~~~~~~~~~----------------------------------------------------- 121 (369)
T 3st7_A 99 ----QDNPYGESKLQGEQLLREYAEEY----------------------------------------------------- 121 (369)
T ss_dssp ----SCSHHHHHHHHHHHHHHHHHHHH-----------------------------------------------------
T ss_pred ----CCCCchHHHHHHHHHHHHHHHHh-----------------------------------------------------
Confidence 14689999999999999988763
Q ss_pred CCCceeEEEeeCcccccCcccccCCCchhhHHHHHH------------hhhhhccChHHHHHHHHHhhccccccccCcee
Q psy13409 255 NITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQR------------VGGLFIKSPLQGAQTTLYCALDKKCERETGLY 322 (330)
Q Consensus 255 ~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~ 322 (330)
++++..+.|+.|-.+....... .....+... -....+..++|+|++++.++..+.. ..|.+
T Consensus 122 ---g~~~~i~R~~~v~G~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~l~~~~~--~~~~~ 194 (369)
T 3st7_A 122 ---GNTVYIYRWPNLFGKWCKPNYN--SVIATFCYKIARNEEIQVNDRNVELTLNYVDDIVAEIKRAIEGTPT--IENGV 194 (369)
T ss_dssp ---CCCEEEEEECEEECTTCCTTSS--CHHHHHHHHHHTTCCCCCSCTTCEEEEEEHHHHHHHHHHHHHTCCC--EETTE
T ss_pred ---CCCEEEEECCceeCCCCCCCcc--hHHHHHHHHHHcCCCeEecCCCeEEEEEEHHHHHHHHHHHHhCCcc--cCCce
Confidence 5778889999887764432111 111111110 1111245699999999999976532 12555
Q ss_pred ccc
Q psy13409 323 YAK 325 (330)
Q Consensus 323 ~~~ 325 (330)
|+-
T Consensus 195 ~~i 197 (369)
T 3st7_A 195 PTV 197 (369)
T ss_dssp ECC
T ss_pred EEe
Confidence 543
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.4e-14 Score=132.45 Aligned_cols=132 Identities=13% Similarity=0.074 Sum_probs=88.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh-h----HHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL-E----KAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~-~----~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.++++||||+|+||++++++|+++|++|++++|+. + ...+..+.+. ..++.++.+|++|.+++.+++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~--------~~~v~~v~~D~~d~~~l~~a~ 75 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFR--------SMGVTIIEGEMEEHEKMVSVL 75 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHH--------HTTCEEEECCTTCHHHHHHHH
T ss_pred ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhh--------cCCcEEEEecCCCHHHHHHHH
Confidence 36799999999999999999999999999999986 1 1122222222 234788999999999888776
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCCccc
Q psy13409 91 QEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
+ .+|++||+++... +.+ .+.+++.+.+.+ .+++| .|..+...
T Consensus 76 ~-------~~d~vi~~a~~~~-----------------~~~----~~~l~~aa~~~g~v~~~v--~S~~g~~~------- 118 (321)
T 3c1o_A 76 K-------QVDIVISALPFPM-----------------ISS----QIHIINAIKAAGNIKRFL--PSDFGCEE------- 118 (321)
T ss_dssp T-------TCSEEEECCCGGG-----------------SGG----GHHHHHHHHHHCCCCEEE--CSCCSSCG-------
T ss_pred c-------CCCEEEECCCccc-----------------hhh----HHHHHHHHHHhCCccEEe--ccccccCc-------
Confidence 5 3799999998541 122 344555555555 57877 34332110
Q ss_pred ccccccC-CCcchhhHHhHHHHHHHHH
Q psy13409 170 DINLEKG-YSATGAYGRSKLANILFTT 195 (330)
Q Consensus 170 ~~~~~~~-~~~~~~Y~asK~a~~~~~~ 195 (330)
+...+ .+....| .+|++++.+++
T Consensus 119 --~~~~~~~p~~~~y-~sK~~~e~~~~ 142 (321)
T 3c1o_A 119 --DRIKPLPPFESVL-EKKRIIRRAIE 142 (321)
T ss_dssp --GGCCCCHHHHHHH-HHHHHHHHHHH
T ss_pred --cccccCCCcchHH-HHHHHHHHHHH
Confidence 00011 1224579 99999887765
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=5e-13 Score=126.24 Aligned_cols=120 Identities=13% Similarity=0.088 Sum_probs=91.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCC-----CEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRG-----ARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G-----~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
+|++|||||+|+||.+++++|+++| ++|++++|+..... ....++.++.+|++|.+++.+++
T Consensus 1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~-------------~~~~~~~~~~~Dl~d~~~~~~~~ 67 (364)
T 2v6g_A 1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW-------------HEDNPINYVQCDISDPDDSQAKL 67 (364)
T ss_dssp CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC-------------CCSSCCEEEECCTTSHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc-------------cccCceEEEEeecCCHHHHHHHH
Confidence 5789999999999999999999999 99999999865421 02356888999999998877765
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEE-------EEcCCCcccC
Q psy13409 91 QEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARII-------NLSSLAHTWG 162 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV-------~iSS~~~~~~ 162 (330)
+. ...+|++||+||... .+.+..+++|+.++.++++++.+.. .+..++| ++||.. .++
T Consensus 68 ~~----~~~~d~vih~a~~~~-------~~~~~~~~~n~~~~~~l~~a~~~~~--~~~~~~v~~~g~~i~~Ss~~-vyg 132 (364)
T 2v6g_A 68 SP----LTDVTHVFYVTWANR-------STEQENCEANSKMFRNVLDAVIPNC--PNLKHISLQTGRKHYMGPFE-SYG 132 (364)
T ss_dssp TT----CTTCCEEEECCCCCC-------SSHHHHHHHHHHHHHHHHHHHTTTC--TTCCEEEEECCTHHHHCCGG-GTT
T ss_pred hc----CCCCCEEEECCCCCc-------chHHHHHHHhHHHHHHHHHHHHHhc--cccceEEeccCceEEEechh-hcc
Confidence 43 234899999999752 3567788999999888888765431 1345776 577753 444
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.48 E-value=5.6e-13 Score=133.19 Aligned_cols=199 Identities=16% Similarity=0.064 Sum_probs=132.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
+++||||||+|+||.++++.|+++|++|++++|+..+. ..+.+|+.+.. .+
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~--------------------~~v~~d~~~~~---------~~ 197 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKP--------------------GKRFWDPLNPA---------SD 197 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCT--------------------TCEECCTTSCC---------TT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCc--------------------cceeecccchh---------HH
Confidence 68999999999999999999999999999999987531 11566776421 23
Q ss_pred cCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccccccc
Q psy13409 96 NESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEK 175 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~ 175 (330)
.+..+|+|||+||..... ..+.+..+..+++|+.++.++++++. .+.+.+++|++||.. .++. .....+++...
T Consensus 198 ~l~~~D~Vih~A~~~~~~-~~~~~~~~~~~~~Nv~gt~~ll~a~a---~~~~~~r~V~~SS~~-vyg~-~~~~~~~~E~~ 271 (516)
T 3oh8_A 198 LLDGADVLVHLAGEPIFG-RFNDSHKEAIRESRVLPTKFLAELVA---ESTQCTTMISASAVG-FYGH-DRGDEILTEES 271 (516)
T ss_dssp TTTTCSEEEECCCC------CCGGGHHHHHHHTHHHHHHHHHHHH---HCSSCCEEEEEEEGG-GGCS-EEEEEEECTTS
T ss_pred hcCCCCEEEECCCCcccc-ccchhHHHHHHHHHHHHHHHHHHHHH---hcCCCCEEEEeCcce-EecC-CCCCCccCCCC
Confidence 345789999999976432 44556778899999999888887633 233457999999965 3431 01112233333
Q ss_pred CCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCCCC
Q psy13409 176 GYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGAN 255 (330)
Q Consensus 176 ~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (330)
+. +...|+.+|...+.+... +. .
T Consensus 272 ~~-~~~~y~~~~~~~E~~~~~----~~--------------------------------------------------~-- 294 (516)
T 3oh8_A 272 ES-GDDFLAEVCRDWEHATAP----AS--------------------------------------------------D-- 294 (516)
T ss_dssp CC-CSSHHHHHHHHHHHTTHH----HH--------------------------------------------------H--
T ss_pred CC-CcChHHHHHHHHHHHHHH----HH--------------------------------------------------h--
Confidence 33 556788888877665432 22 2
Q ss_pred CCceeEEEeeCcccccCcccccCCCchhhHHHHHH--------hh----hhhccChHHHHHHHHHhhcccc
Q psy13409 256 ITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQR--------VG----GLFIKSPLQGAQTTLYCALDKK 314 (330)
Q Consensus 256 ~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~--------~~----~~~~~~~~e~a~~~~~l~~~~~ 314 (330)
.|++++.|.||.|.++... ....+... ++ ...+..++|+|++++.++..+.
T Consensus 295 -~gi~~~ilRp~~v~Gp~~~-------~~~~~~~~~~~g~~~~~g~g~~~~~~i~v~Dva~ai~~~l~~~~ 357 (516)
T 3oh8_A 295 -AGKRVAFIRTGVALSGRGG-------MLPLLKTLFSTGLGGKFGDGTSWFSWIAIDDLTDIYYRAIVDAQ 357 (516)
T ss_dssp -TTCEEEEEEECEEEBTTBS-------HHHHHHHTTC---CCCCTTSCCEECEEEHHHHHHHHHHHHHCTT
T ss_pred -CCCCEEEEEeeEEECCCCC-------hHHHHHHHHHhCCCcccCCCCceEceEeHHHHHHHHHHHHhCcc
Confidence 6899999999999887421 01111100 11 0125678999999999997643
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.2e-14 Score=132.62 Aligned_cols=132 Identities=14% Similarity=0.083 Sum_probs=87.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
.++++||||+|+||+++++.|+++|++|++++|+.+...+..+.+.. ..+.++.+|++|.+++.++++
T Consensus 11 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~--------~~v~~v~~Dl~d~~~l~~a~~---- 78 (318)
T 2r6j_A 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQS--------LGAIIVKGELDEHEKLVELMK---- 78 (318)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHH--------TTCEEEECCTTCHHHHHHHHT----
T ss_pred CCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhc--------CCCEEEEecCCCHHHHHHHHc----
Confidence 36799999999999999999999999999999987522222222222 247789999999998887765
Q ss_pred cCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCCcccccccc
Q psy13409 96 NESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSMHFEDINLE 174 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~~~~~~~~~ 174 (330)
.+|++||+++... +.+ .+.+++.+.+.+ .+++|+ |+ .+.... ..
T Consensus 79 ---~~d~vi~~a~~~~-----------------~~~----~~~l~~aa~~~g~v~~~v~-S~-~g~~~~---------~~ 123 (318)
T 2r6j_A 79 ---KVDVVISALAFPQ-----------------ILD----QFKILEAIKVAGNIKRFLP-SD-FGVEED---------RI 123 (318)
T ss_dssp ---TCSEEEECCCGGG-----------------STT----HHHHHHHHHHHCCCCEEEC-SC-CSSCTT---------TC
T ss_pred ---CCCEEEECCchhh-----------------hHH----HHHHHHHHHhcCCCCEEEe-ec-cccCcc---------cc
Confidence 3799999998531 112 344455555555 567773 33 321110 00
Q ss_pred cC-CCcchhhHHhHHHHHHHHH
Q psy13409 175 KG-YSATGAYGRSKLANILFTT 195 (330)
Q Consensus 175 ~~-~~~~~~Y~asK~a~~~~~~ 195 (330)
.+ .+....| .+|.+++.+++
T Consensus 124 ~~~~p~~~~y-~sK~~~e~~~~ 144 (318)
T 2r6j_A 124 NALPPFEALI-ERKRMIRRAIE 144 (318)
T ss_dssp CCCHHHHHHH-HHHHHHHHHHH
T ss_pred cCCCCcchhH-HHHHHHHHHHH
Confidence 11 1224578 99998776654
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.47 E-value=3.5e-13 Score=124.85 Aligned_cols=137 Identities=12% Similarity=0.045 Sum_probs=90.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChh-----HHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLE-----KAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~-----~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.++++||||+|+||++++++|+++|++|++++|+.+ +.+.. +.+. ..++.++.+|++|.+++.+++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~-~~~~--------~~~~~~~~~D~~d~~~l~~~~ 74 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQML-LYFK--------QLGAKLIEASLDDHQRLVDAL 74 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHH-HHHH--------TTTCEEECCCSSCHHHHHHHH
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHH-HHHH--------hCCeEEEeCCCCCHHHHHHHH
Confidence 467999999999999999999999999999999842 22221 2221 345788999999999887776
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCCccc
Q psy13409 91 QEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
+ .+|++||++|..... .|+.+..+ +++.+.+.+ -+++|+ |..+.... .
T Consensus 75 ~-------~~d~vi~~a~~~~~~-------------~~~~~~~~----l~~aa~~~g~v~~~v~--S~~g~~~~---~-- 123 (313)
T 1qyd_A 75 K-------QVDVVISALAGGVLS-------------HHILEQLK----LVEAIKEAGNIKRFLP--SEFGMDPD---I-- 123 (313)
T ss_dssp T-------TCSEEEECCCCSSSS-------------TTTTTHHH----HHHHHHHSCCCSEEEC--SCCSSCTT---S--
T ss_pred h-------CCCEEEECCccccch-------------hhHHHHHH----HHHHHHhcCCCceEEe--cCCcCCcc---c--
Confidence 4 479999999975321 13444333 444445555 568874 33322111 0
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHH
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTT 195 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~ 195 (330)
+ .....+....| .+|.+++.+++
T Consensus 124 -~-~~~~~p~~~~y-~sK~~~e~~~~ 146 (313)
T 1qyd_A 124 -M-EHALQPGSITF-IDKRKVRRAIE 146 (313)
T ss_dssp -C-CCCCSSTTHHH-HHHHHHHHHHH
T ss_pred -c-ccCCCCCcchH-HHHHHHHHHHH
Confidence 0 00111335678 99999877664
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.46 E-value=8.8e-14 Score=128.60 Aligned_cols=135 Identities=13% Similarity=0.118 Sum_probs=87.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHH--HHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKA--ETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l--~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
.++++||||+|+||+++++.|+++|++|+++.|+.... .+..+.+... ....+.++.+|++|.+++.++++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l-----~~~~v~~v~~D~~d~~~l~~~~~-- 76 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESF-----KASGANIVHGSIDDHASLVEAVK-- 76 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHH-----HTTTCEEECCCTTCHHHHHHHHH--
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHH-----HhCCCEEEEeccCCHHHHHHHHc--
Confidence 46799999999999999999999999999999984321 1111112111 13457889999999998887775
Q ss_pred HhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCCcccccc
Q psy13409 94 LDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSMHFEDIN 172 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~~~~~~~ 172 (330)
.+|++||+++... +.+ .+.+++.+.+.+ .+++|+ |+ .+....
T Consensus 77 -----~~d~vi~~a~~~~-----------------~~~----~~~l~~aa~~~g~v~~~v~-S~-~g~~~~--------- 119 (308)
T 1qyc_A 77 -----NVDVVISTVGSLQ-----------------IES----QVNIIKAIKEVGTVKRFFP-SE-FGNDVD--------- 119 (308)
T ss_dssp -----TCSEEEECCCGGG-----------------SGG----GHHHHHHHHHHCCCSEEEC-SC-CSSCTT---------
T ss_pred -----CCCEEEECCcchh-----------------hhh----HHHHHHHHHhcCCCceEee-cc-cccCcc---------
Confidence 3799999998531 112 233444455555 577773 43 321110
Q ss_pred cccC-CCcchhhHHhHHHHHHHHH
Q psy13409 173 LEKG-YSATGAYGRSKLANILFTT 195 (330)
Q Consensus 173 ~~~~-~~~~~~Y~asK~a~~~~~~ 195 (330)
...+ .+....| .+|++++.+++
T Consensus 120 ~~~~~~p~~~~y-~sK~~~e~~~~ 142 (308)
T 1qyc_A 120 NVHAVEPAKSVF-EVKAKVRRAIE 142 (308)
T ss_dssp SCCCCTTHHHHH-HHHHHHHHHHH
T ss_pred ccccCCcchhHH-HHHHHHHHHHH
Confidence 0111 2335678 99999877664
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=5.4e-10 Score=102.94 Aligned_cols=135 Identities=15% Similarity=0.135 Sum_probs=83.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
++||||||+|.||++++++|+++|++|+++.|++.. ..+. .| . + ..+.
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~------------------~~~~---~~-----~---~---~~~~ 48 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGP------------------GRIT---WD-----E---L---AASG 48 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCT------------------TEEE---HH-----H---H---HHHC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc------------------Ceee---cc-----h---h---hHhh
Confidence 469999999999999999999999999999997531 1221 11 1 1 1123
Q ss_pred CCCeeEEEEcCCCCC--CCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC--CCeEEEEcCCCcccCCCCCcccccc
Q psy13409 97 ESAIHLLINNAGVMM--CPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA--PARIINLSSLAHTWGDGSMHFEDIN 172 (330)
Q Consensus 97 ~g~iDvlInnAG~~~--~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~--~g~IV~iSS~~~~~~~~~~~~~~~~ 172 (330)
...+|.+||.||... +....+.......++.|+.++-.+.+. ....+ ...+|+.||. +.++.... .+.+
T Consensus 49 l~~~d~vihla~~~i~~~~~~~~~~~~~~~~~~~v~~t~~l~~~----~~~~~~~~~~~i~~Ss~-~vyg~~~~--~~~~ 121 (298)
T 4b4o_A 49 LPSCDAAVNLAGENILNPLRRWNETFQKEVLGSRLETTQLLAKA----ITKAPQPPKAWVLVTGV-AYYQPSLT--AEYD 121 (298)
T ss_dssp CCSCSEEEECCCCCSSCTTSCCCHHHHHHHHHHHHHHHHHHHHH----HHHCSSCCSEEEEEEEG-GGSCCCSS--CCBC
T ss_pred ccCCCEEEEeccCcccchhhhhhhhhhhhhhhHHHHHHHHHHHH----HHHhCCCceEEEEEeee-eeecCCCC--Cccc
Confidence 457899999998542 223345566677788888885555444 33333 2345655654 45553222 2333
Q ss_pred cccCCCcchhhHHhHHHH
Q psy13409 173 LEKGYSATGAYGRSKLAN 190 (330)
Q Consensus 173 ~~~~~~~~~~Y~asK~a~ 190 (330)
+..+..+...|+..|...
T Consensus 122 E~~p~~~~~~~~~~~~~~ 139 (298)
T 4b4o_A 122 EDSPGGDFDFFSNLVTKW 139 (298)
T ss_dssp TTCCCSCSSHHHHHHHHH
T ss_pred ccCCccccchhHHHHHHH
Confidence 444445555566555543
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=7.4e-12 Score=115.92 Aligned_cols=108 Identities=21% Similarity=0.271 Sum_probs=81.9
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
.+++||+++||||+||||++++..|+++|++|++++|+.++++++.+++... .++.++.+|++++++++++++
T Consensus 115 ~~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~-------~~~~~~~~D~~~~~~~~~~~~ 187 (287)
T 1lu9_A 115 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKR-------FKVNVTAAETADDASRAEAVK 187 (287)
T ss_dssp SCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH-------HTCCCEEEECCSHHHHHHHTT
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhc-------CCcEEEEecCCCHHHHHHHHH
Confidence 4578999999999999999999999999999999999998888887777542 124567899999988776654
Q ss_pred HHHhcCCCeeEEEEcCCCCCCC---CCCCh-hhHHHhHHHHHHHHH
Q psy13409 92 EILDNESAIHLLINNAGVMMCP---RQLTE-DGYELQFATNHLGHY 133 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~---~~~~~-~~~~~~l~vN~~g~~ 133 (330)
.+|++|||+|..... .+.+. +.+...+++|+.+++
T Consensus 188 -------~~DvlVn~ag~g~~~~~~~~~~~~~~~~~~~dvn~~~~~ 226 (287)
T 1lu9_A 188 -------GAHFVFTAGAIGLELLPQAAWQNESSIEIVADYNAQPPL 226 (287)
T ss_dssp -------TCSEEEECCCTTCCSBCHHHHTTCTTCCEEEECCCSSSC
T ss_pred -------hCCEEEECCCccccCCChhHcCchHHHHHHHHhhhhhhH
Confidence 369999999864321 12222 444456666666644
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=4.9e-10 Score=105.58 Aligned_cols=157 Identities=12% Similarity=-0.002 Sum_probs=101.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCC-------EEEEEecCh--hHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGA-------RVIMACRSL--EKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVR 87 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~-------~Vil~~R~~--~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~ 87 (330)
++++||||+|.||.+++..|+++|+ .|+++++.. +++......+... ...+ + .|+++.+++.
T Consensus 5 mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~------~~~~--~-~di~~~~~~~ 75 (327)
T 1y7t_A 5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDC------AFPL--L-AGLEATDDPK 75 (327)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTT------TCTT--E-EEEEEESCHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcc------cccc--c-CCeEeccChH
Confidence 5799999999999999999999996 799999875 2233222233211 1111 1 3555544443
Q ss_pred HHHHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCc
Q psy13409 88 KCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 88 ~l~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~ 167 (330)
..+ ...|++||.||....+ ..+..+.+++|+.+...+++.+.+.- ....+++++|+......
T Consensus 76 ~a~-------~~~D~Vih~Ag~~~~~----~~~~~~~~~~Nv~~t~~l~~a~~~~~--~~~~~vvv~snp~~~~~----- 137 (327)
T 1y7t_A 76 VAF-------KDADYALLVGAAPRKA----GMERRDLLQVNGKIFTEQGRALAEVA--KKDVKVLVVGNPANTNA----- 137 (327)
T ss_dssp HHT-------TTCSEEEECCCCCCCT----TCCHHHHHHHHHHHHHHHHHHHHHHS--CTTCEEEECSSSHHHHH-----
T ss_pred HHh-------CCCCEEEECCCcCCCC----CCCHHHHHHHHHHHHHHHHHHHHhhc--CCCeEEEEeCCchhhhH-----
Confidence 332 2479999999976532 13345678899999777766654421 12357888777542111
Q ss_pred ccccc-ccc-CCCcchhhHHhHHHHHHHHHHHHHHhc
Q psy13409 168 FEDIN-LEK-GYSATGAYGRSKLANILFTTELAKRLQ 202 (330)
Q Consensus 168 ~~~~~-~~~-~~~~~~~Y~asK~a~~~~~~~la~~~~ 202 (330)
++. ... ++++...|+.+|...+.+.+.+++.++
T Consensus 138 --~~~~~~~~~~~p~~~yg~tkl~~er~~~~~a~~~g 172 (327)
T 1y7t_A 138 --LIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTG 172 (327)
T ss_dssp --HHHHHTCTTSCGGGEEECCHHHHHHHHHHHHHHHT
T ss_pred --HHHHHHcCCCChhheeccchHHHHHHHHHHHHHhC
Confidence 000 111 234556799999999999999998877
|
| >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=4.9e-09 Score=93.84 Aligned_cols=79 Identities=18% Similarity=0.234 Sum_probs=61.4
Q ss_pred CCCCCEEEEEcC----------------CCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEE
Q psy13409 13 RLDGKTAIVTGS----------------NTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76 (330)
Q Consensus 13 ~~~gk~aLITGa----------------s~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i 76 (330)
+|+||++||||| |||||+++|+.|++.|++|++++++.. ++ ....+ -
T Consensus 5 ~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~~-l~--------------~~~g~--~ 67 (226)
T 1u7z_A 5 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVS-LP--------------TPPFV--K 67 (226)
T ss_dssp TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCC-CC--------------CCTTE--E
T ss_pred CCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCcc-cc--------------cCCCC--e
Confidence 489999999999 689999999999999999999988652 10 01122 2
Q ss_pred EccCCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCC
Q psy13409 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMM 111 (330)
Q Consensus 77 ~~Dls~~~si~~l~~~i~~~~g~iDvlInnAG~~~ 111 (330)
.+|+++.+ .+++.+.+.++++|++|||||+..
T Consensus 68 ~~dv~~~~---~~~~~v~~~~~~~Dili~~Aav~d 99 (226)
T 1u7z_A 68 RVDVMTAL---EMEAAVNASVQQQNIFIGCAAVAD 99 (226)
T ss_dssp EEECCSHH---HHHHHHHHHGGGCSEEEECCBCCS
T ss_pred EEccCcHH---HHHHHHHHhcCCCCEEEECCcccC
Confidence 46887754 456666777889999999999764
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.1e-07 Score=74.59 Aligned_cols=74 Identities=20% Similarity=0.156 Sum_probs=60.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCC-CEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRG-ARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G-~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
.+++++|+|+ |++|.++++.|.+.| ++|++++|+.++++... ...+..+.+|+++.+++.++++
T Consensus 4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~------------~~~~~~~~~d~~~~~~~~~~~~-- 68 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN------------RMGVATKQVDAKDEAGLAKALG-- 68 (118)
T ss_dssp TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH------------TTTCEEEECCTTCHHHHHHHTT--
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH------------hCCCcEEEecCCCHHHHHHHHc--
Confidence 4578999999 999999999999999 89999999987765543 1235678899999887766643
Q ss_pred HhcCCCeeEEEEcCC
Q psy13409 94 LDNESAIHLLINNAG 108 (330)
Q Consensus 94 ~~~~g~iDvlInnAG 108 (330)
.+|++|++++
T Consensus 69 -----~~d~vi~~~~ 78 (118)
T 3ic5_A 69 -----GFDAVISAAP 78 (118)
T ss_dssp -----TCSEEEECSC
T ss_pred -----CCCEEEECCC
Confidence 5799999996
|
| >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=98.59 E-value=2.2e-08 Score=89.88 Aligned_cols=79 Identities=15% Similarity=0.215 Sum_probs=59.1
Q ss_pred CCCEEEEEcC----------------CCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEc
Q psy13409 15 DGKTAIVTGS----------------NTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQL 78 (330)
Q Consensus 15 ~gk~aLITGa----------------s~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~ 78 (330)
+||++||||| ||++|.++|+.|++.|+.|++++|..... . . ....+.. .
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~~-~-------~-----~~~~~~~--~ 66 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALK-P-------E-----PHPNLSI--R 66 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSCC-C-------C-----CCTTEEE--E
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCcccc-c-------c-----CCCCeEE--E
Confidence 5899999999 78899999999999999999999975310 0 0 0123333 3
Q ss_pred cCCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCC
Q psy13409 79 DLSSLKSVRKCAQEILDNESAIHLLINNAGVMM 111 (330)
Q Consensus 79 Dls~~~si~~l~~~i~~~~g~iDvlInnAG~~~ 111 (330)
|+. +++.+++.+.+.++.+|++|+|||+..
T Consensus 67 ~v~---s~~em~~~v~~~~~~~Dili~aAAvsD 96 (232)
T 2gk4_A 67 EIT---NTKDLLIEMQERVQDYQVLIHSMAVSD 96 (232)
T ss_dssp ECC---SHHHHHHHHHHHGGGCSEEEECSBCCS
T ss_pred EHh---HHHHHHHHHHHhcCCCCEEEEcCcccc
Confidence 444 466677777777788999999999764
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=98.56 E-value=3.5e-07 Score=88.68 Aligned_cols=82 Identities=23% Similarity=0.397 Sum_probs=70.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCC---CEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRG---ARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G---~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
++++|+|| |+||+++++.|+++| ..|++++|+.+++++..+.+... .+.++..+.+|+++.++++++++..
T Consensus 2 ~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~-----~~~~~~~~~~D~~d~~~l~~~l~~~ 75 (405)
T 4ina_A 2 AKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAK-----GYGEIDITTVDADSIEELVALINEV 75 (405)
T ss_dssp CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHT-----TCCCCEEEECCTTCHHHHHHHHHHH
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhh-----cCCceEEEEecCCCHHHHHHHHHhh
Confidence 57999999 899999999999998 48999999999998888877643 1346788999999999999998875
Q ss_pred HhcCCCeeEEEEcCCC
Q psy13409 94 LDNESAIHLLINNAGV 109 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~ 109 (330)
++|++|||++.
T Consensus 76 -----~~DvVin~ag~ 86 (405)
T 4ina_A 76 -----KPQIVLNIALP 86 (405)
T ss_dssp -----CCSEEEECSCG
T ss_pred -----CCCEEEECCCc
Confidence 58999999984
|
| >3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.6e-07 Score=79.11 Aligned_cols=78 Identities=9% Similarity=0.064 Sum_probs=63.5
Q ss_pred CchHHHHHHHHHHCCCEEEEEecChhHHH---HHHHHHHHhhcccCCCCeEEEEEccCCCH--HHHHHHHHHHHhcCCCe
Q psy13409 26 TGIGKCTANELAKRGARVIMACRSLEKAE---TAADDIRTSLKDVKDAGEVVIRQLDLSSL--KSVRKCAQEILDNESAI 100 (330)
Q Consensus 26 ~gIG~aia~~L~~~G~~Vil~~R~~~~l~---~~~~~l~~~~~~~~~~~~v~~i~~Dls~~--~si~~l~~~i~~~~g~i 100 (330)
+-++.++++.|++.|++|++..|+..... +..+.+++ .+.+...+++|++++ ++++++++.+.+.+|+
T Consensus 26 ~~p~~a~a~~La~~Ga~vvi~~r~~~e~~~~~~~~~~~~~------~G~~~~~i~~Dv~~~~~~~v~~~~~~i~~~~G~- 98 (157)
T 3gxh_A 26 GLPNEQQFSLLKQAGVDVVINLMPDSSKDAHPDEGKLVTQ------AGMDYVYIPVDWQNPKVEDVEAFFAAMDQHKGK- 98 (157)
T ss_dssp BCCCHHHHHHHHHTTCCEEEECSCTTSTTSCTTHHHHHHH------TTCEEEECCCCTTSCCHHHHHHHHHHHHHTTTS-
T ss_pred CCCCHHHHHHHHHcCCCEEEECCCcccccccccHHHHHHH------cCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCC-
Confidence 45789999999999999999988754332 12334443 367888999999999 9999999999998999
Q ss_pred eEEEEcCCCC
Q psy13409 101 HLLINNAGVM 110 (330)
Q Consensus 101 DvlInnAG~~ 110 (330)
|+||||||..
T Consensus 99 dVLVnnAgg~ 108 (157)
T 3gxh_A 99 DVLVHCLANY 108 (157)
T ss_dssp CEEEECSBSH
T ss_pred CEEEECCCCC
Confidence 9999999963
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=6.5e-07 Score=83.84 Aligned_cols=79 Identities=18% Similarity=0.297 Sum_probs=60.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.|++++|+||+||||.+++..+...|++|++++++.++++.+ +++ +.. ..+|.++.+++.+.+.++.
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~-~~~---------g~~---~~~d~~~~~~~~~~~~~~~ 211 (333)
T 1v3u_A 145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYL-KQI---------GFD---AAFNYKTVNSLEEALKKAS 211 (333)
T ss_dssp SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHT---------TCS---EEEETTSCSCHHHHHHHHC
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-Hhc---------CCc---EEEecCCHHHHHHHHHHHh
Confidence 689999999999999999999999999999999998776554 222 222 2357777455555555543
Q ss_pred hcCCCeeEEEEcCC
Q psy13409 95 DNESAIHLLINNAG 108 (330)
Q Consensus 95 ~~~g~iDvlInnAG 108 (330)
. +.+|++|+|+|
T Consensus 212 ~--~~~d~vi~~~g 223 (333)
T 1v3u_A 212 P--DGYDCYFDNVG 223 (333)
T ss_dssp T--TCEEEEEESSC
T ss_pred C--CCCeEEEECCC
Confidence 3 57999999998
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=98.38 E-value=9.6e-07 Score=76.32 Aligned_cols=103 Identities=17% Similarity=0.168 Sum_probs=70.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.|++++|+||+||||.+++..+...|++|++++|+.++++... + .+.. ..+|.++.+..+.+.+..
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~----~------~g~~---~~~d~~~~~~~~~~~~~~- 103 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLS----R------LGVE---YVGDSRSVDFADEILELT- 103 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH----T------TCCS---EEEETTCSTHHHHHHHHT-
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH----H------cCCC---EEeeCCcHHHHHHHHHHh-
Confidence 6899999999999999999999999999999999987654331 1 1222 124777765444443322
Q ss_pred hcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCC
Q psy13409 95 DNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLA 158 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~ 158 (330)
. .+.+|++|+|+|. +. .+..++.+.. +|++|++++..
T Consensus 104 ~-~~~~D~vi~~~g~---------~~---------------~~~~~~~l~~--~G~~v~~g~~~ 140 (198)
T 1pqw_A 104 D-GYGVDVVLNSLAG---------EA---------------IQRGVQILAP--GGRFIELGKKD 140 (198)
T ss_dssp T-TCCEEEEEECCCT---------HH---------------HHHHHHTEEE--EEEEEECSCGG
T ss_pred C-CCCCeEEEECCch---------HH---------------HHHHHHHhcc--CCEEEEEcCCC
Confidence 1 1369999999972 10 2344454433 58999988754
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=98.31 E-value=3.6e-07 Score=84.40 Aligned_cols=83 Identities=29% Similarity=0.435 Sum_probs=61.9
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
.++++|+++|||++ |+|++++..|++.| +|++++|+.++++++.+++.... .... .+.+|+++.
T Consensus 124 ~~l~~k~vlV~GaG-giG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~-----~~~~-~~~~d~~~~-------- 187 (287)
T 1nvt_A 124 GRVKDKNIVIYGAG-GAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKL-----NKKF-GEEVKFSGL-------- 187 (287)
T ss_dssp CCCCSCEEEEECCS-HHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHH-----TCCH-HHHEEEECT--------
T ss_pred CCcCCCEEEEECch-HHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhc-----cccc-ceeEEEeeH--------
Confidence 35789999999996 99999999999999 99999999988888877765421 0000 112344331
Q ss_pred HHHhcCCCeeEEEEcCCCCCC
Q psy13409 92 EILDNESAIHLLINNAGVMMC 112 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~ 112 (330)
.+..+.+|++|||+|....
T Consensus 188 --~~~~~~~DilVn~ag~~~~ 206 (287)
T 1nvt_A 188 --DVDLDGVDIIINATPIGMY 206 (287)
T ss_dssp --TCCCTTCCEEEECSCTTCT
T ss_pred --HHhhCCCCEEEECCCCCCC
Confidence 3456789999999997653
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=98.30 E-value=1.4e-06 Score=85.64 Aligned_cols=78 Identities=21% Similarity=0.265 Sum_probs=61.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
++|+++|+| +|++|+++++.|++.|++|++++|+.++++++.+. -..+..+.+|+++.++++++++
T Consensus 2 ~~k~VlViG-aG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~----------~~~~~~~~~Dv~d~~~l~~~l~--- 67 (450)
T 1ff9_A 2 ATKSVLMLG-SGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAG----------VQHSTPISLDVNDDAALDAEVA--- 67 (450)
T ss_dssp CCCEEEEEC-CSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTT----------CTTEEEEECCTTCHHHHHHHHT---
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHh----------cCCceEEEeecCCHHHHHHHHc---
Confidence 578999998 79999999999999999999999998765443221 1236788899999888776653
Q ss_pred hcCCCeeEEEEcCCCC
Q psy13409 95 DNESAIHLLINNAGVM 110 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~ 110 (330)
.+|++||+++..
T Consensus 68 ----~~DvVIn~a~~~ 79 (450)
T 1ff9_A 68 ----KHDLVISLIPYT 79 (450)
T ss_dssp ----TSSEEEECCC--
T ss_pred ----CCcEEEECCccc
Confidence 589999999864
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=6.7e-09 Score=102.44 Aligned_cols=46 Identities=37% Similarity=0.437 Sum_probs=40.5
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAA 57 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~ 57 (330)
+.++.||+++|||++ +||+++++.|...|++|+++++++.+..+..
T Consensus 260 g~~L~GKtVvVtGaG-gIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa 305 (488)
T 3ond_A 260 DVMIAGKVAVVAGYG-DVGKGCAAALKQAGARVIVTEIDPICALQAT 305 (488)
T ss_dssp CCCCTTCEEEEECCS-HHHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred CCcccCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 346899999999996 9999999999999999999999987765544
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.6e-06 Score=82.92 Aligned_cols=108 Identities=18% Similarity=0.146 Sum_probs=73.7
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
.+.+++++|+|+ |+||+++++.+...|++|++++|+.++++...+.+ +.. +.+|.++.+++++++.
T Consensus 163 ~l~~~~V~ViGa-G~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~---------g~~---~~~~~~~~~~l~~~~~- 228 (369)
T 2eez_A 163 GVAPASVVILGG-GTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVF---------GGR---VITLTATEANIKKSVQ- 228 (369)
T ss_dssp BBCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT---------TTS---EEEEECCHHHHHHHHH-
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhc---------Cce---EEEecCCHHHHHHHHh-
Confidence 488999999999 99999999999999999999999988766543322 222 3467777777766654
Q ss_pred HHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCc
Q psy13409 93 ILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAH 159 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~ 159 (330)
..|++|++++..... .+..+.+..++.|+ .++.||++++..+
T Consensus 229 ------~~DvVi~~~g~~~~~-----------------~~~li~~~~l~~mk--~gg~iV~v~~~~g 270 (369)
T 2eez_A 229 ------HADLLIGAVLVPGAK-----------------APKLVTRDMLSLMK--EGAVIVDVAVDQG 270 (369)
T ss_dssp ------HCSEEEECCC------------------------CCSCHHHHTTSC--TTCEEEECC----
T ss_pred ------CCCEEEECCCCCccc-----------------cchhHHHHHHHhhc--CCCEEEEEecCCC
Confidence 369999999864210 01222455555563 3589999998653
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=8.2e-06 Score=76.46 Aligned_cols=86 Identities=20% Similarity=0.302 Sum_probs=65.6
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecC---hhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRS---LEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSV 86 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~---~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si 86 (330)
..+++||+++|+|+ ||+|++++..|++.|+ +|++++|+ .++++++.+++.... +..+ ...++.+.+++
T Consensus 149 ~~~l~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~-----~~~~--~~~~~~~~~~l 220 (315)
T 3tnl_A 149 GHDIIGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKT-----DCKA--QLFDIEDHEQL 220 (315)
T ss_dssp TCCCTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHS-----SCEE--EEEETTCHHHH
T ss_pred CCCccCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhc-----CCce--EEeccchHHHH
Confidence 35689999999998 7999999999999999 89999999 888888888876642 2233 34466665555
Q ss_pred HHHHHHHHhcCCCeeEEEEcCCCCC
Q psy13409 87 RKCAQEILDNESAIHLLINNAGVMM 111 (330)
Q Consensus 87 ~~l~~~i~~~~g~iDvlInnAG~~~ 111 (330)
...+. ..|++||+.....
T Consensus 221 ~~~l~-------~aDiIINaTp~Gm 238 (315)
T 3tnl_A 221 RKEIA-------ESVIFTNATGVGM 238 (315)
T ss_dssp HHHHH-------TCSEEEECSSTTS
T ss_pred Hhhhc-------CCCEEEECccCCC
Confidence 44333 3599999987654
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=6.7e-07 Score=89.46 Aligned_cols=97 Identities=27% Similarity=0.365 Sum_probs=62.9
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
++++|+++|||| ||+|++++..|++.|++|++++|+.++++++.+.+ +..+. ++.+ ++.+
T Consensus 361 ~l~~k~vlV~Ga-GGig~aia~~L~~~G~~V~i~~R~~~~a~~la~~~---------~~~~~----~~~d---l~~~--- 420 (523)
T 2o7s_A 361 PLASKTVVVIGA-GGAGKALAYGAKEKGAKVVIANRTYERALELAEAI---------GGKAL----SLTD---LDNY--- 420 (523)
T ss_dssp -----CEEEECC-SHHHHHHHHHHHHHCC-CEEEESSHHHHHHHHHHT---------TC-CE----ETTT---TTTC---
T ss_pred ccCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc---------CCcee----eHHH---hhhc---
Confidence 478999999999 59999999999999999999999998877766554 11221 2212 1000
Q ss_pred HHhcCCCeeEEEEcCCCCCC-------CCCCChhhHHHhHHHHHHHH
Q psy13409 93 ILDNESAIHLLINNAGVMMC-------PRQLTEDGYELQFATNHLGH 132 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~-------~~~~~~~~~~~~l~vN~~g~ 132 (330)
....+|++|||+|.... ..+.+.+.+...+++|+.+.
T Consensus 421 ---~~~~~DilVN~agvg~~~~~~~~~~~~~~~~~~~~v~Dvny~p~ 464 (523)
T 2o7s_A 421 ---HPEDGMVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPR 464 (523)
T ss_dssp -----CCSEEEEECSSTTCTTCTTCCSSCTTTGGGEEEEEECCCSSS
T ss_pred ---cccCceEEEECCCCCCCCCCCCCCCChHHcCcCcEEEEEeeCCc
Confidence 11358999999997532 13345566777888888764
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=2.5e-06 Score=69.08 Aligned_cols=78 Identities=18% Similarity=0.162 Sum_probs=56.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
++++++++|+|+ |++|..+++.|.+.|++|++++++.++.+... ......+.+|.++.+.++++
T Consensus 3 ~~~~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~------------~~~~~~~~~d~~~~~~l~~~--- 66 (144)
T 2hmt_A 3 RIKNKQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNAYA------------SYATHAVIANATEENELLSL--- 66 (144)
T ss_dssp ---CCSEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHTTT------------TTCSEEEECCTTCHHHHHTT---
T ss_pred CCcCCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH------------HhCCEEEEeCCCCHHHHHhc---
Confidence 467788999998 99999999999999999999999876543321 11234577899886554332
Q ss_pred HHhcCCCeeEEEEcCCC
Q psy13409 93 ILDNESAIHLLINNAGV 109 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~ 109 (330)
.....|++|++++.
T Consensus 67 ---~~~~~d~vi~~~~~ 80 (144)
T 2hmt_A 67 ---GIRNFEYVIVAIGA 80 (144)
T ss_dssp ---TGGGCSEEEECCCS
T ss_pred ---CCCCCCEEEECCCC
Confidence 12468999999873
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.17 E-value=7.1e-06 Score=77.28 Aligned_cols=104 Identities=18% Similarity=0.149 Sum_probs=74.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.|+++||+|++|+||.+++..+...|++|++++|+.++++.. +++ +.. ..+|+++.+++.+.+.++.
T Consensus 169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~-~~~---------g~~---~~~d~~~~~~~~~~~~~~~ 235 (347)
T 2hcy_A 169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELF-RSI---------GGE---VFIDFTKEKDIVGAVLKAT 235 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHH-HHT---------TCC---EEEETTTCSCHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHH-HHc---------CCc---eEEecCccHhHHHHHHHHh
Confidence 689999999999999999999999999999999998776433 221 222 2348776566666666654
Q ss_pred hcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCC
Q psy13409 95 DNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLA 158 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~ 158 (330)
+. .+|++|+++|.. + .++.+++.+.. +|++|.+++..
T Consensus 236 ~~--~~D~vi~~~g~~--------~---------------~~~~~~~~l~~--~G~iv~~g~~~ 272 (347)
T 2hcy_A 236 DG--GAHGVINVSVSE--------A---------------AIEASTRYVRA--NGTTVLVGMPA 272 (347)
T ss_dssp TS--CEEEEEECSSCH--------H---------------HHHHHTTSEEE--EEEEEECCCCT
T ss_pred CC--CCCEEEECCCcH--------H---------------HHHHHHHHHhc--CCEEEEEeCCC
Confidence 43 699999999831 1 23444444433 58999988754
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.12 E-value=8.3e-06 Score=66.46 Aligned_cols=76 Identities=21% Similarity=0.168 Sum_probs=58.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
+++++++|+|+ |.+|.++++.|.+.|++|++++++++..++..+ ..+.++.+|.++++.++++
T Consensus 4 ~~~~~v~I~G~-G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~------------~~~~~~~gd~~~~~~l~~~---- 66 (141)
T 3llv_A 4 NGRYEYIVIGS-EAAGVGLVRELTAAGKKVLAVDKSKEKIELLED------------EGFDAVIADPTDESFYRSL---- 66 (141)
T ss_dssp --CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH------------TTCEEEECCTTCHHHHHHS----
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH------------CCCcEEECCCCCHHHHHhC----
Confidence 45678999998 789999999999999999999999887655432 1246788999998866543
Q ss_pred HhcCCCeeEEEEcCC
Q psy13409 94 LDNESAIHLLINNAG 108 (330)
Q Consensus 94 ~~~~g~iDvlInnAG 108 (330)
.....|++|.+.+
T Consensus 67 --~~~~~d~vi~~~~ 79 (141)
T 3llv_A 67 --DLEGVSAVLITGS 79 (141)
T ss_dssp --CCTTCSEEEECCS
T ss_pred --CcccCCEEEEecC
Confidence 2346799998776
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=6.2e-06 Score=77.44 Aligned_cols=80 Identities=15% Similarity=0.265 Sum_probs=59.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.|+++||+||+|+||.+++..+...|++|++++++.++++.+.+++ +.. ..+|.++.+++.+.+.++.
T Consensus 155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~---------g~~---~~~d~~~~~~~~~~~~~~~ 222 (345)
T 2j3h_A 155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKF---------GFD---DAFNYKEESDLTAALKRCF 222 (345)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTS---------CCS---EEEETTSCSCSHHHHHHHC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---------CCc---eEEecCCHHHHHHHHHHHh
Confidence 6899999999999999999999999999999999987765443221 222 2246666544555555443
Q ss_pred hcCCCeeEEEEcCC
Q psy13409 95 DNESAIHLLINNAG 108 (330)
Q Consensus 95 ~~~g~iDvlInnAG 108 (330)
. +.+|++|+|+|
T Consensus 223 ~--~~~d~vi~~~g 234 (345)
T 2j3h_A 223 P--NGIDIYFENVG 234 (345)
T ss_dssp T--TCEEEEEESSC
T ss_pred C--CCCcEEEECCC
Confidence 2 57999999998
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.5e-05 Score=74.63 Aligned_cols=80 Identities=19% Similarity=0.265 Sum_probs=58.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.|++++|+||+||||.+++..+...|++|++++|+.++++.+.+ + +.. ..+|.++.+..+.+.+..
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~-~---------g~~---~~~d~~~~~~~~~i~~~~- 210 (333)
T 1wly_A 145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARK-L---------GCH---HTINYSTQDFAEVVREIT- 210 (333)
T ss_dssp TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-H---------TCS---EEEETTTSCHHHHHHHHH-
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-c---------CCC---EEEECCCHHHHHHHHHHh-
Confidence 68999999999999999999999999999999999877655432 2 222 224676655444443332
Q ss_pred hcCCCeeEEEEcCCC
Q psy13409 95 DNESAIHLLINNAGV 109 (330)
Q Consensus 95 ~~~g~iDvlInnAG~ 109 (330)
. ...+|++|+|+|.
T Consensus 211 ~-~~~~d~vi~~~g~ 224 (333)
T 1wly_A 211 G-GKGVDVVYDSIGK 224 (333)
T ss_dssp T-TCCEEEEEECSCT
T ss_pred C-CCCCeEEEECCcH
Confidence 2 2369999999984
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.08 E-value=5.7e-06 Score=81.59 Aligned_cols=80 Identities=23% Similarity=0.271 Sum_probs=61.7
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHC-CCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKR-GARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~-G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.++++++++|+|+ |++|++++..|++. |++|++++|+.++++++.+. ..+..+.+|+++.+++.+++
T Consensus 19 ~~l~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~-----------~~~~~~~~D~~d~~~l~~~l 86 (467)
T 2axq_A 19 GRHMGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLANAQALAKP-----------SGSKAISLDVTDDSALDKVL 86 (467)
T ss_dssp ----CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGG-----------GTCEEEECCTTCHHHHHHHH
T ss_pred cCCCCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHh-----------cCCcEEEEecCCHHHHHHHH
Confidence 4578899999998 99999999999998 78999999998876655422 12456789999988877665
Q ss_pred HHHHhcCCCeeEEEEcCCCC
Q psy13409 91 QEILDNESAIHLLINNAGVM 110 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~ 110 (330)
+ .+|++||+++..
T Consensus 87 ~-------~~DvVIn~tp~~ 99 (467)
T 2axq_A 87 A-------DNDVVISLIPYT 99 (467)
T ss_dssp H-------TSSEEEECSCGG
T ss_pred c-------CCCEEEECCchh
Confidence 4 479999999864
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=1.1e-05 Score=75.16 Aligned_cols=104 Identities=11% Similarity=0.135 Sum_probs=71.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.|++++|+||+||||.+++..+...|++|+++++++++++.+.+ + +.. ..+|.++.+..+.+.+..
T Consensus 140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~-~---------g~~---~~~~~~~~~~~~~~~~~~- 205 (327)
T 1qor_A 140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK-A---------GAW---QVINYREEDLVERLKEIT- 205 (327)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH-H---------TCS---EEEETTTSCHHHHHHHHT-
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-c---------CCC---EEEECCCccHHHHHHHHh-
Confidence 68999999999999999999999999999999999877655432 2 222 224666655444444332
Q ss_pred hcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCc
Q psy13409 95 DNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAH 159 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~ 159 (330)
. ...+|++|+|+|.. . .+..++.+.. +|++|.+++..+
T Consensus 206 ~-~~~~D~vi~~~g~~---------~---------------~~~~~~~l~~--~G~iv~~g~~~~ 243 (327)
T 1qor_A 206 G-GKKVRVVYDSVGRD---------T---------------WERSLDCLQR--RGLMVSFGNSSG 243 (327)
T ss_dssp T-TCCEEEEEECSCGG---------G---------------HHHHHHTEEE--EEEEEECCCTTC
T ss_pred C-CCCceEEEECCchH---------H---------------HHHHHHHhcC--CCEEEEEecCCC
Confidence 1 23699999999821 0 2334444433 589999987543
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=98.02 E-value=6.4e-06 Score=75.31 Aligned_cols=79 Identities=16% Similarity=0.228 Sum_probs=59.0
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
.++++|+++|+|+ ||+|++++..|++.|++|++++|+.++++++.+++... . .+. ..|+ +++
T Consensus 115 ~~l~~k~vlViGa-Gg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~------~-~~~--~~~~---~~~----- 176 (271)
T 1nyt_A 115 FIRPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHT------G-SIQ--ALSM---DEL----- 176 (271)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGG------S-SEE--ECCS---GGG-----
T ss_pred cCcCCCEEEEECC-cHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhcc------C-Cee--EecH---HHh-----
Confidence 4678999999998 79999999999999999999999998887776655321 1 222 2333 221
Q ss_pred HHHhcCCCeeEEEEcCCCCCC
Q psy13409 92 EILDNESAIHLLINNAGVMMC 112 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~ 112 (330)
.+ +..|++||+++....
T Consensus 177 --~~--~~~DivVn~t~~~~~ 193 (271)
T 1nyt_A 177 --EG--HEFDLIINATSSGIS 193 (271)
T ss_dssp --TT--CCCSEEEECCSCGGG
T ss_pred --cc--CCCCEEEECCCCCCC
Confidence 11 578999999997643
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=1.4e-05 Score=75.56 Aligned_cols=80 Identities=13% Similarity=0.228 Sum_probs=58.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.|++++|+||+||||.+++..+...|++|+++++++++++.+ +++ +.. ..+|.++.+..+.+.+..
T Consensus 162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~~---------g~~---~~~~~~~~~~~~~~~~~~- 227 (354)
T 2j8z_A 162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMA-EKL---------GAA---AGFNYKKEDFSEATLKFT- 227 (354)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-HHH---------TCS---EEEETTTSCHHHHHHHHT-
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHc---------CCc---EEEecCChHHHHHHHHHh-
Confidence 689999999999999999999999999999999998876654 222 222 234666654444433221
Q ss_pred hcCCCeeEEEEcCCC
Q psy13409 95 DNESAIHLLINNAGV 109 (330)
Q Consensus 95 ~~~g~iDvlInnAG~ 109 (330)
. ...+|++|+|+|.
T Consensus 228 ~-~~~~d~vi~~~G~ 241 (354)
T 2j8z_A 228 K-GAGVNLILDCIGG 241 (354)
T ss_dssp T-TSCEEEEEESSCG
T ss_pred c-CCCceEEEECCCc
Confidence 1 1369999999984
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=1.1e-05 Score=75.54 Aligned_cols=79 Identities=16% Similarity=0.321 Sum_probs=57.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.|+++||+||+|+||.+++..+...|++|+++++++++++.+.+++ +.. ...|.++.+-.+.+. +..
T Consensus 149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~---------g~~---~~~~~~~~~~~~~~~-~~~ 215 (336)
T 4b7c_A 149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEEL---------GFD---GAIDYKNEDLAAGLK-REC 215 (336)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTT---------CCS---EEEETTTSCHHHHHH-HHC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---------CCC---EEEECCCHHHHHHHH-Hhc
Confidence 6899999999999999999999999999999999988766543322 222 124666644333333 222
Q ss_pred hcCCCeeEEEEcCC
Q psy13409 95 DNESAIHLLINNAG 108 (330)
Q Consensus 95 ~~~g~iDvlInnAG 108 (330)
.+.+|++|+|+|
T Consensus 216 --~~~~d~vi~~~g 227 (336)
T 4b7c_A 216 --PKGIDVFFDNVG 227 (336)
T ss_dssp --TTCEEEEEESSC
T ss_pred --CCCceEEEECCC
Confidence 347999999998
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=9.2e-06 Score=76.76 Aligned_cols=79 Identities=19% Similarity=0.296 Sum_probs=56.9
Q ss_pred CC--CEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 15 DG--KTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 15 ~g--k~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
.| +++||+||+||||.+++..+...|+ +|++++++.++++.+.+++ +.. ..+|.++.+..+ .+.
T Consensus 158 ~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~---------g~~---~~~d~~~~~~~~-~~~ 224 (357)
T 2zb4_A 158 AGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSEL---------GFD---AAINYKKDNVAE-QLR 224 (357)
T ss_dssp TTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTS---------CCS---EEEETTTSCHHH-HHH
T ss_pred CCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHc---------CCc---eEEecCchHHHH-HHH
Confidence 57 9999999999999999999999999 9999999987765543221 222 235666643333 333
Q ss_pred HHHhcCCCeeEEEEcCC
Q psy13409 92 EILDNESAIHLLINNAG 108 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG 108 (330)
+... +.+|++|+|+|
T Consensus 225 ~~~~--~~~d~vi~~~G 239 (357)
T 2zb4_A 225 ESCP--AGVDVYFDNVG 239 (357)
T ss_dssp HHCT--TCEEEEEESCC
T ss_pred HhcC--CCCCEEEECCC
Confidence 3322 26999999998
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.94 E-value=4.6e-05 Score=70.24 Aligned_cols=83 Identities=20% Similarity=0.297 Sum_probs=62.0
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.++++|+++|+|+ ||+|++++..|++.|+ +|++++|+.++.+++.+++..... ...+. ..++.+ +...+
T Consensus 123 ~~l~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~----~~~i~--~~~~~~---l~~~l 192 (283)
T 3jyo_A 123 PNAKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVG----REAVV--GVDARG---IEDVI 192 (283)
T ss_dssp TTCCCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHT----SCCEE--EECSTT---HHHHH
T ss_pred cCcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcC----CceEE--EcCHHH---HHHHH
Confidence 3689999999998 8999999999999999 799999999999988888876431 22332 334333 33333
Q ss_pred HHHHhcCCCeeEEEEcCCCCC
Q psy13409 91 QEILDNESAIHLLINNAGVMM 111 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~ 111 (330)
. ..|++||+.....
T Consensus 193 ~-------~~DiVInaTp~Gm 206 (283)
T 3jyo_A 193 A-------AADGVVNATPMGM 206 (283)
T ss_dssp H-------HSSEEEECSSTTS
T ss_pred h-------cCCEEEECCCCCC
Confidence 3 2499999987654
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=97.93 E-value=2.7e-05 Score=73.17 Aligned_cols=157 Identities=9% Similarity=-0.028 Sum_probs=95.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCC-------EEEEEecC----hhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHH
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGA-------RVIMACRS----LEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLK 84 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~-------~Vil~~R~----~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~ 84 (330)
.++++||||+|.||.+++..|+..|. .|++++++ .++++....++.... ..+ ..|+....
T Consensus 5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~------~~~---~~~i~~~~ 75 (329)
T 1b8p_A 5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCA------FPL---LAGMTAHA 75 (329)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTT------CTT---EEEEEEES
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhc------ccc---cCcEEEec
Confidence 46899999999999999999999885 79999998 555555455554311 011 12333323
Q ss_pred HHHHHHHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhh--CCCeEEEEcCCCcccC
Q psy13409 85 SVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKS--APARIINLSSLAHTWG 162 (330)
Q Consensus 85 si~~l~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~--~~g~IV~iSS~~~~~~ 162 (330)
+....+ ...|++|+.||....+ ..+ ..+.+..|+.....++ +.+.+. ..+.+|++|.......
T Consensus 76 ~~~~al-------~~aD~Vi~~ag~~~~~-g~~---r~dl~~~N~~i~~~i~----~~i~~~~~p~a~ii~~SNPv~~~t 140 (329)
T 1b8p_A 76 DPMTAF-------KDADVALLVGARPRGP-GME---RKDLLEANAQIFTVQG----KAIDAVASRNIKVLVVGNPANTNA 140 (329)
T ss_dssp SHHHHT-------TTCSEEEECCCCCCCT-TCC---HHHHHHHHHHHHHHHH----HHHHHHSCTTCEEEECSSSHHHHH
T ss_pred CcHHHh-------CCCCEEEEeCCCCCCC-CCC---HHHHHHHHHHHHHHHH----HHHHHhcCCCeEEEEccCchHHHH
Confidence 333332 3469999999976432 122 3345678888744444 444444 2468888886442211
Q ss_pred CCCCccccccccc-CCCcchhhHHhHHHHHHHHHHHHHHhc
Q psy13409 163 DGSMHFEDINLEK-GYSATGAYGRSKLANILFTTELAKRLQ 202 (330)
Q Consensus 163 ~~~~~~~~~~~~~-~~~~~~~Y~asK~a~~~~~~~la~~~~ 202 (330)
. . ..... .++....|+.++.--..+.+.+|+.++
T Consensus 141 ~--~----~~~~~~~~p~~~v~g~t~Ld~~r~~~~la~~lg 175 (329)
T 1b8p_A 141 Y--I----AMKSAPSLPAKNFTAMLRLDHNRALSQIAAKTG 175 (329)
T ss_dssp H--H----HHHTCTTSCGGGEEECCHHHHHHHHHHHHHHHT
T ss_pred H--H----HHHHcCCCCHHHEEEeecHHHHHHHHHHHHHhC
Confidence 0 0 00000 123444588888777788888998887
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=3.5e-05 Score=72.79 Aligned_cols=79 Identities=14% Similarity=0.275 Sum_probs=57.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.|++++|+||+||||.+++..+...|++|+++++++++++.. +++ +.. ..+|.++.+..+.+.+..
T Consensus 170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~~---------ga~---~~~d~~~~~~~~~~~~~~- 235 (351)
T 1yb5_A 170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIV-LQN---------GAH---EVFNHREVNYIDKIKKYV- 235 (351)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHT---------TCS---EEEETTSTTHHHHHHHHH-
T ss_pred CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHH-HHc---------CCC---EEEeCCCchHHHHHHHHc-
Confidence 689999999999999999999999999999999998876532 221 222 224666654444443322
Q ss_pred hcCCCeeEEEEcCC
Q psy13409 95 DNESAIHLLINNAG 108 (330)
Q Consensus 95 ~~~g~iDvlInnAG 108 (330)
. ...+|++|+|+|
T Consensus 236 ~-~~~~D~vi~~~G 248 (351)
T 1yb5_A 236 G-EKGIDIIIEMLA 248 (351)
T ss_dssp C-TTCEEEEEESCH
T ss_pred C-CCCcEEEEECCC
Confidence 1 236999999998
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=7.1e-05 Score=69.95 Aligned_cols=85 Identities=22% Similarity=0.296 Sum_probs=62.9
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecC---hhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRS---LEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVR 87 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~---~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~ 87 (330)
.+++||+++|+|+ ||+|++++..|++.|+ +|+++.|+ .++++++.+++.... +..+. ..++.+.+...
T Consensus 144 ~~l~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~-----~~~v~--~~~~~~l~~~~ 215 (312)
T 3t4e_A 144 FDMRGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENT-----DCVVT--VTDLADQHAFT 215 (312)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHS-----SCEEE--EEETTCHHHHH
T ss_pred CCcCCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhcc-----CcceE--EechHhhhhhH
Confidence 5689999999998 8999999999999998 89999999 778888887776542 33333 34555543222
Q ss_pred HHHHHHHhcCCCeeEEEEcCCCCC
Q psy13409 88 KCAQEILDNESAIHLLINNAGVMM 111 (330)
Q Consensus 88 ~l~~~i~~~~g~iDvlInnAG~~~ 111 (330)
..+. ..|++||+.....
T Consensus 216 ~~l~-------~~DiIINaTp~Gm 232 (312)
T 3t4e_A 216 EALA-------SADILTNGTKVGM 232 (312)
T ss_dssp HHHH-------HCSEEEECSSTTS
T ss_pred hhcc-------CceEEEECCcCCC
Confidence 2222 2599999987664
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=5.3e-05 Score=71.26 Aligned_cols=80 Identities=19% Similarity=0.252 Sum_probs=57.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHC-CCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKR-GARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~-G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
.|++++|+|++|+||.+++..+... |++|+++++++++++.+. ++ +... .+|.++.+..+.+ .++
T Consensus 170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~-~~---------g~~~---~~~~~~~~~~~~~-~~~ 235 (347)
T 1jvb_A 170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAK-RA---------GADY---VINASMQDPLAEI-RRI 235 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHH-HH---------TCSE---EEETTTSCHHHHH-HHH
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-Hh---------CCCE---EecCCCccHHHHH-HHH
Confidence 6899999999999999999999998 999999999987765542 22 2221 2356554433332 222
Q ss_pred HhcCCCeeEEEEcCCC
Q psy13409 94 LDNESAIHLLINNAGV 109 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~ 109 (330)
... +.+|++|+++|.
T Consensus 236 ~~~-~~~d~vi~~~g~ 250 (347)
T 1jvb_A 236 TES-KGVDAVIDLNNS 250 (347)
T ss_dssp TTT-SCEEEEEESCCC
T ss_pred hcC-CCceEEEECCCC
Confidence 221 479999999984
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=97.84 E-value=3.3e-05 Score=75.24 Aligned_cols=110 Identities=15% Similarity=0.258 Sum_probs=72.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEE--EccCCC---------
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR--QLDLSS--------- 82 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i--~~Dls~--------- 82 (330)
-.|+++||+||+|+||.+.+..+...|++|++++++.++++.+. ++ +....+. ..|+.+
T Consensus 219 ~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~-~l---------Ga~~~i~~~~~~~~~~~~~~~~~~ 288 (447)
T 4a0s_A 219 KQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVR-AL---------GCDLVINRAELGITDDIADDPRRV 288 (447)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HT---------TCCCEEEHHHHTCCTTGGGCHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-hc---------CCCEEEeccccccccccccccccc
Confidence 36899999999999999999999999999999999887765442 21 2222221 123321
Q ss_pred HHHHHHHHHHHHhcC-CCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCc
Q psy13409 83 LKSVRKCAQEILDNE-SAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAH 159 (330)
Q Consensus 83 ~~si~~l~~~i~~~~-g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~ 159 (330)
.++++.+.+.+.+.. ..+|++|+++|.. . .+..++.+. .+|++|.+++..+
T Consensus 289 ~~~~~~~~~~v~~~~g~g~Dvvid~~G~~---------~---------------~~~~~~~l~--~~G~iv~~G~~~~ 340 (447)
T 4a0s_A 289 VETGRKLAKLVVEKAGREPDIVFEHTGRV---------T---------------FGLSVIVAR--RGGTVVTCGSSSG 340 (447)
T ss_dssp HHHHHHHHHHHHHHHSSCCSEEEECSCHH---------H---------------HHHHHHHSC--TTCEEEESCCTTC
T ss_pred chhhhHHHHHHHHHhCCCceEEEECCCch---------H---------------HHHHHHHHh--cCCEEEEEecCCC
Confidence 234445555555533 3699999999831 1 133444443 3699999987653
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.82 E-value=8.5e-05 Score=70.11 Aligned_cols=79 Identities=16% Similarity=0.294 Sum_probs=58.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.|+++||+||+|+||.+++..+...|++|+++++++++++.+.+ + +... ..|.++.+-.+.+.+ ..
T Consensus 167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-l---------Ga~~---~~~~~~~~~~~~~~~-~~ 232 (353)
T 4dup_A 167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACER-L---------GAKR---GINYRSEDFAAVIKA-ET 232 (353)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-H---------TCSE---EEETTTSCHHHHHHH-HH
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-c---------CCCE---EEeCCchHHHHHHHH-Hh
Confidence 68999999999999999999999999999999999987765432 2 2221 235555443333333 32
Q ss_pred hcCCCeeEEEEcCCC
Q psy13409 95 DNESAIHLLINNAGV 109 (330)
Q Consensus 95 ~~~g~iDvlInnAG~ 109 (330)
.+.+|++|+|+|.
T Consensus 233 --~~g~Dvvid~~g~ 245 (353)
T 4dup_A 233 --GQGVDIILDMIGA 245 (353)
T ss_dssp --SSCEEEEEESCCG
T ss_pred --CCCceEEEECCCH
Confidence 4579999999983
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00036 Score=64.73 Aligned_cols=115 Identities=15% Similarity=0.101 Sum_probs=73.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCC--EEEEEec--ChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGA--RVIMACR--SLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~--~Vil~~R--~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
++++||||+|.+|..++..|+..|. .++++++ +.++++....++..... .....++. . | +.+.
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~-~~~~~~v~--~-~--~~~a------- 67 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIA-YDSNTRVR--Q-G--GYED------- 67 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHT-TTCCCEEE--E-C--CGGG-------
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHh-hCCCcEEE--e-C--CHHH-------
Confidence 3799999999999999999999885 6888999 77666554555544322 11222332 2 2 2221
Q ss_pred HHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcC
Q psy13409 93 ILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSS 156 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS 156 (330)
+...|++|+.||....+ ..+ ..+.+..|+.. ++.+.+.+.+.....+|+++|
T Consensus 68 ----~~~aDvVi~~ag~~~~~-g~~---r~dl~~~N~~i----~~~i~~~i~~~~p~~~viv~S 119 (303)
T 1o6z_A 68 ----TAGSDVVVITAGIPRQP-GQT---RIDLAGDNAPI----MEDIQSSLDEHNDDYISLTTS 119 (303)
T ss_dssp ----GTTCSEEEECCCCCCCT-TCC---HHHHHHHHHHH----HHHHHHHHHTTCSCCEEEECC
T ss_pred ----hCCCCEEEEcCCCCCCC-CCC---HHHHHHHHHHH----HHHHHHHHHHHCCCcEEEEeC
Confidence 23579999999976432 122 23457778877 555555555555556666665
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=6.5e-05 Score=71.24 Aligned_cols=100 Identities=16% Similarity=0.150 Sum_probs=66.9
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh---hHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL---EKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~---~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
+++|+++||+|+ |+||..++..+...|++|++++++. ++++.+ +++ +.. .+ | .+ +-.+.+
T Consensus 178 ~~~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~-~~~---------ga~--~v--~-~~-~~~~~~ 240 (366)
T 2cdc_A 178 TLNCRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVI-EET---------KTN--YY--N-SS-NGYDKL 240 (366)
T ss_dssp SSTTCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHH-HHH---------TCE--EE--E-CT-TCSHHH
T ss_pred cCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHH-HHh---------CCc--ee--c-hH-HHHHHH
Confidence 356999999999 9999999999999999999999987 665332 222 222 22 5 44 222223
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHH-HHHHHHHhhhCCCeEEEEcCCC
Q psy13409 90 AQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFT-LLLLPRIIKSAPARIINLSSLA 158 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~-~~~l~~l~~~~~g~IV~iSS~~ 158 (330)
.+ .. +.+|++|+++|... .+ +.+++.+.. +|++|+++...
T Consensus 241 ~~--~~--~~~d~vid~~g~~~-----------------------~~~~~~~~~l~~--~G~iv~~g~~~ 281 (366)
T 2cdc_A 241 KD--SV--GKFDVIIDATGADV-----------------------NILGNVIPLLGR--NGVLGLFGFST 281 (366)
T ss_dssp HH--HH--CCEEEEEECCCCCT-----------------------HHHHHHGGGEEE--EEEEEECSCCC
T ss_pred HH--hC--CCCCEEEECCCChH-----------------------HHHHHHHHHHhc--CCEEEEEecCC
Confidence 22 22 57999999998531 12 444555533 58999887743
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00012 Score=68.57 Aligned_cols=103 Identities=15% Similarity=0.196 Sum_probs=70.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.|+++||+|++|+||.+++..+...|++|+++++++++++.+. ++ +... .+|.++.+ +.+.+.++.
T Consensus 166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~-~~---------ga~~---~~d~~~~~-~~~~~~~~~ 231 (343)
T 2eih_A 166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAK-AL---------GADE---TVNYTHPD-WPKEVRRLT 231 (343)
T ss_dssp TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HH---------TCSE---EEETTSTT-HHHHHHHHT
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-hc---------CCCE---EEcCCccc-HHHHHHHHh
Confidence 6899999999999999999999999999999999988766543 22 2221 24666643 222223222
Q ss_pred hcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCC
Q psy13409 95 DNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLA 158 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~ 158 (330)
. ...+|++|+++| .. . .+..++.+.. +|++|.+++..
T Consensus 232 ~-~~~~d~vi~~~g-~~-----~------------------~~~~~~~l~~--~G~~v~~g~~~ 268 (343)
T 2eih_A 232 G-GKGADKVVDHTG-AL-----Y------------------FEGVIKATAN--GGRIAIAGASS 268 (343)
T ss_dssp T-TTCEEEEEESSC-SS-----S------------------HHHHHHHEEE--EEEEEESSCCC
T ss_pred C-CCCceEEEECCC-HH-----H------------------HHHHHHhhcc--CCEEEEEecCC
Confidence 1 236999999998 31 0 2344444433 58999988754
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00032 Score=65.81 Aligned_cols=116 Identities=22% Similarity=0.179 Sum_probs=71.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCC--CEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRG--ARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G--~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
.++++||||+|.+|..++..|+.+| ..|++++++.+ +....++.... ...++.. +++.++.+..++
T Consensus 8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~--~~~~~dL~~~~----~~~~v~~----~~~t~d~~~al~-- 75 (326)
T 1smk_A 8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA--PGVTADISHMD----TGAVVRG----FLGQQQLEAALT-- 75 (326)
T ss_dssp CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH--HHHHHHHHTSC----SSCEEEE----EESHHHHHHHHT--
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc--HhHHHHhhccc----ccceEEE----EeCCCCHHHHcC--
Confidence 3589999999999999999999998 68999998765 22233333211 1113322 223334433332
Q ss_pred HhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcC
Q psy13409 94 LDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSS 156 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS 156 (330)
..|++|+++|...... .+. .+.+..|+... +.+.+.+.+.....+|+++|
T Consensus 76 -----gaDvVi~~ag~~~~~g-~~r---~dl~~~N~~~~----~~i~~~i~~~~p~~~viv~S 125 (326)
T 1smk_A 76 -----GMDLIIVPAGVPRKPG-MTR---DDLFKINAGIV----KTLCEGIAKCCPRAIVNLIS 125 (326)
T ss_dssp -----TCSEEEECCCCCCCSS-CCC---SHHHHHHHHHH----HHHHHHHHHHCTTSEEEECC
T ss_pred -----CCCEEEEcCCcCCCCC-CCH---HHHHHHHHHHH----HHHHHHHHhhCCCeEEEEEC
Confidence 4699999999754332 222 23466787774 44444455555455666665
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00012 Score=60.59 Aligned_cols=78 Identities=13% Similarity=0.139 Sum_probs=57.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh-hHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL-EKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~-~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
.+++++|+|+ |.+|..+++.|.+.|++|++++++. ++.++..+.. ...+.++.+|.++++.+++.
T Consensus 2 ~~~~vlI~G~-G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~---------~~~~~~i~gd~~~~~~l~~a---- 67 (153)
T 1id1_A 2 RKDHFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL---------GDNADVIPGDSNDSSVLKKA---- 67 (153)
T ss_dssp CCSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH---------CTTCEEEESCTTSHHHHHHH----
T ss_pred CCCcEEEECC-CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhh---------cCCCeEEEcCCCCHHHHHHc----
Confidence 4577889986 9999999999999999999999984 4444433222 23467889999998765443
Q ss_pred HhcCCCeeEEEEcCC
Q psy13409 94 LDNESAIHLLINNAG 108 (330)
Q Consensus 94 ~~~~g~iDvlInnAG 108 (330)
.....|.+|.+.+
T Consensus 68 --~i~~ad~vi~~~~ 80 (153)
T 1id1_A 68 --GIDRCRAILALSD 80 (153)
T ss_dssp --TTTTCSEEEECSS
T ss_pred --ChhhCCEEEEecC
Confidence 1235688888875
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0001 Score=68.86 Aligned_cols=105 Identities=14% Similarity=0.218 Sum_probs=69.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
-.|+++||+||+|+||.+++..+...|++|++++++.++++.+ +++ +... ..|.++.+-.+.+.+ .
T Consensus 147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~~---------ga~~---~~~~~~~~~~~~~~~-~ 212 (334)
T 3qwb_A 147 KKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIA-KEY---------GAEY---LINASKEDILRQVLK-F 212 (334)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHT---------TCSE---EEETTTSCHHHHHHH-H
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHc---------CCcE---EEeCCCchHHHHHHH-H
Confidence 3689999999999999999999999999999999998876633 222 2222 235555433333322 2
Q ss_pred HhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCc
Q psy13409 94 LDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAH 159 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~ 159 (330)
.. ...+|++|+|+|.. ..+..++.+.. +|++|.++...+
T Consensus 213 ~~-~~g~D~vid~~g~~------------------------~~~~~~~~l~~--~G~iv~~G~~~~ 251 (334)
T 3qwb_A 213 TN-GKGVDASFDSVGKD------------------------TFEISLAALKR--KGVFVSFGNASG 251 (334)
T ss_dssp TT-TSCEEEEEECCGGG------------------------GHHHHHHHEEE--EEEEEECCCTTC
T ss_pred hC-CCCceEEEECCChH------------------------HHHHHHHHhcc--CCEEEEEcCCCC
Confidence 11 23699999999841 02334444433 589999887543
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0001 Score=69.99 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=58.0
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
.-+.++|+|.|| |++|+.+++.|++ .++|.+++++..+++++. ..+..+.+|++|.+++.++++
T Consensus 13 ~g~~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~-------------~~~~~~~~d~~d~~~l~~~~~- 76 (365)
T 3abi_A 13 EGRHMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENLEKVK-------------EFATPLKVDASNFDKLVEVMK- 76 (365)
T ss_dssp ---CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHHHHHT-------------TTSEEEECCTTCHHHHHHHHT-
T ss_pred cCCccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHh-------------ccCCcEEEecCCHHHHHHHHh-
Confidence 334457999998 9999999998865 579999999988766542 234567899999988877765
Q ss_pred HHhcCCCeeEEEEcCCCC
Q psy13409 93 ILDNESAIHLLINNAGVM 110 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~ 110 (330)
..|++|++++..
T Consensus 77 ------~~DvVi~~~p~~ 88 (365)
T 3abi_A 77 ------EFELVIGALPGF 88 (365)
T ss_dssp ------TCSEEEECCCGG
T ss_pred ------CCCEEEEecCCc
Confidence 359999998753
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00034 Score=55.95 Aligned_cols=75 Identities=16% Similarity=0.300 Sum_probs=55.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
+++++|+|+ |.+|..+++.|.+.|++|++++|+++..+...+. . .+.++..|.++.+.+.. .
T Consensus 4 ~m~i~IiG~-G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~---------~--~~~~~~~d~~~~~~l~~------~ 65 (140)
T 1lss_A 4 GMYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE---------I--DALVINGDCTKIKTLED------A 65 (140)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---------C--SSEEEESCTTSHHHHHH------T
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh---------c--CcEEEEcCCCCHHHHHH------c
Confidence 468999987 9999999999999999999999998765543321 1 23467789888665432 1
Q ss_pred cCCCeeEEEEcCC
Q psy13409 96 NESAIHLLINNAG 108 (330)
Q Consensus 96 ~~g~iDvlInnAG 108 (330)
.....|++|.+.+
T Consensus 66 ~~~~~d~vi~~~~ 78 (140)
T 1lss_A 66 GIEDADMYIAVTG 78 (140)
T ss_dssp TTTTCSEEEECCS
T ss_pred CcccCCEEEEeeC
Confidence 2346799999975
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0002 Score=66.65 Aligned_cols=80 Identities=18% Similarity=0.242 Sum_probs=56.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.|+++||+||+|+||.+++..+...|++|+++++++++++.+. ++ +... ..|.++.+-.+.+.+..
T Consensus 140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~~---------Ga~~---~~~~~~~~~~~~~~~~~- 205 (325)
T 3jyn_A 140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAK-AL---------GAWE---TIDYSHEDVAKRVLELT- 205 (325)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH-HH---------TCSE---EEETTTSCHHHHHHHHT-
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-Hc---------CCCE---EEeCCCccHHHHHHHHh-
Confidence 6899999999999999999999999999999999988766443 22 2221 23555544333332221
Q ss_pred hcCCCeeEEEEcCCC
Q psy13409 95 DNESAIHLLINNAGV 109 (330)
Q Consensus 95 ~~~g~iDvlInnAG~ 109 (330)
....+|++|+++|.
T Consensus 206 -~~~g~Dvvid~~g~ 219 (325)
T 3jyn_A 206 -DGKKCPVVYDGVGQ 219 (325)
T ss_dssp -TTCCEEEEEESSCG
T ss_pred -CCCCceEEEECCCh
Confidence 12369999999984
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0002 Score=65.40 Aligned_cols=78 Identities=15% Similarity=0.249 Sum_probs=57.6
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
.++++|+++|+|+ ||+|++++..|++.|++|++++|+.++++++.+.+... . .+.. +|+ +++.
T Consensus 115 ~~~~~~~vlvlGa-Gg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~------~-~~~~--~~~---~~~~---- 177 (272)
T 1p77_A 115 WLRPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPY------G-NIQA--VSM---DSIP---- 177 (272)
T ss_dssp CCCTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGG------S-CEEE--EEG---GGCC----
T ss_pred CCcCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcccc------C-CeEE--eeH---HHhc----
Confidence 4678999999998 89999999999999999999999998888877666431 1 2222 232 1110
Q ss_pred HHHhcCCCeeEEEEcCCCCC
Q psy13409 92 EILDNESAIHLLINNAGVMM 111 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~ 111 (330)
+ +..|++||+++...
T Consensus 178 ---~--~~~DivIn~t~~~~ 192 (272)
T 1p77_A 178 ---L--QTYDLVINATSAGL 192 (272)
T ss_dssp ---C--SCCSEEEECCCC--
T ss_pred ---c--CCCCEEEECCCCCC
Confidence 1 46899999999764
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0016 Score=60.61 Aligned_cols=157 Identities=17% Similarity=0.143 Sum_probs=86.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHCCC--EEEEEec--ChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRGA--RVIMACR--SLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G~--~Vil~~R--~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
+++||||+|.||.+++..|+..|. .++++++ +.++++.....+...... .+..+.+...| +++.
T Consensus 2 KI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~--~~~~~~i~~~~----d~l~------ 69 (313)
T 1hye_A 2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAG--TRSDANIYVES----DENL------ 69 (313)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTT--SCCCCEEEEEE----TTCG------
T ss_pred EEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHh--cCCCeEEEeCC----cchH------
Confidence 699999999999999999998885 6888998 765555544444432211 11122222211 0111
Q ss_pred HhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCC-CcccCCCCCcccccc
Q psy13409 94 LDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSL-AHTWGDGSMHFEDIN 172 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~-~~~~~~~~~~~~~~~ 172 (330)
+.+...|++|+.||....+ .. ...+.+..|+.....+++. +.+.. ..+|+++|- ...... -.-
T Consensus 70 -~al~gaD~Vi~~Ag~~~~~-g~---~r~dl~~~N~~i~~~i~~~----i~~~~-~~~vlv~SNPv~~~t~------~~~ 133 (313)
T 1hye_A 70 -RIIDESDVVIITSGVPRKE-GM---SRMDLAKTNAKIVGKYAKK----IAEIC-DTKIFVITNPVDVMTY------KAL 133 (313)
T ss_dssp -GGGTTCSEEEECCSCCCCT-TC---CHHHHHHHHHHHHHHHHHH----HHHHC-CCEEEECSSSHHHHHH------HHH
T ss_pred -HHhCCCCEEEECCCCCCCC-CC---cHHHHHHHHHHHHHHHHHH----HHHhC-CeEEEEecCcHHHHHH------HHH
Confidence 1123579999999975432 12 2344577888885555544 44455 555555552 111100 000
Q ss_pred cccCCCcchhhHH-hHHHHHHHHHHHHHHhc
Q psy13409 173 LEKGYSATGAYGR-SKLANILFTTELAKRLQ 202 (330)
Q Consensus 173 ~~~~~~~~~~Y~a-sK~a~~~~~~~la~~~~ 202 (330)
...+++..-.++. +..-...+.+.+|+.++
T Consensus 134 k~~~~p~~rviG~gt~LD~~r~~~~la~~lg 164 (313)
T 1hye_A 134 VDSKFERNQVFGLGTHLDSLRFKVAIAKFFG 164 (313)
T ss_dssp HHHCCCTTSEEECTTHHHHHHHHHHHHHHHT
T ss_pred HhhCcChhcEEEeCccHHHHHHHHHHHHHhC
Confidence 1112233344555 55555566667777665
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0002 Score=67.04 Aligned_cols=80 Identities=16% Similarity=0.175 Sum_probs=56.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.|+++||+|++|+||.+++..+...|++|++++++.++++.+.+ + +... ..|.++.+-.+.+. +..
T Consensus 144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-l---------ga~~---~~~~~~~~~~~~~~-~~~ 209 (340)
T 3gms_A 144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLR-L---------GAAY---VIDTSTAPLYETVM-ELT 209 (340)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH-H---------TCSE---EEETTTSCHHHHHH-HHT
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-C---------CCcE---EEeCCcccHHHHHH-HHh
Confidence 68999999999999999999888899999999999887665432 2 2221 23555543333332 221
Q ss_pred hcCCCeeEEEEcCCC
Q psy13409 95 DNESAIHLLINNAGV 109 (330)
Q Consensus 95 ~~~g~iDvlInnAG~ 109 (330)
. ...+|++|+|+|.
T Consensus 210 ~-~~g~Dvvid~~g~ 223 (340)
T 3gms_A 210 N-GIGADAAIDSIGG 223 (340)
T ss_dssp T-TSCEEEEEESSCH
T ss_pred C-CCCCcEEEECCCC
Confidence 1 2369999999984
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00043 Score=64.92 Aligned_cols=79 Identities=20% Similarity=0.368 Sum_probs=54.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.|+++||+||+|+||.+++..+...|++|++++++.++++.+.+ + +... ++ |.. +++...+.+..
T Consensus 159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-~---------ga~~-v~--~~~--~~~~~~v~~~~ 223 (342)
T 4eye_A 159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKS-V---------GADI-VL--PLE--EGWAKAVREAT 223 (342)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH-H---------TCSE-EE--ESS--TTHHHHHHHHT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-c---------CCcE-Ee--cCc--hhHHHHHHHHh
Confidence 68999999999999999999999999999999999887654432 2 2221 22 333 22322222221
Q ss_pred hcCCCeeEEEEcCCC
Q psy13409 95 DNESAIHLLINNAGV 109 (330)
Q Consensus 95 ~~~g~iDvlInnAG~ 109 (330)
. ...+|++|+++|.
T Consensus 224 ~-~~g~Dvvid~~g~ 237 (342)
T 4eye_A 224 G-GAGVDMVVDPIGG 237 (342)
T ss_dssp T-TSCEEEEEESCC-
T ss_pred C-CCCceEEEECCch
Confidence 1 1269999999984
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00015 Score=60.02 Aligned_cols=81 Identities=11% Similarity=0.158 Sum_probs=56.5
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
+..++.+++++|+|+ |.+|..+++.|.+.|++|++++|++++++.+.+ ...+..+..|.++.+.+...
T Consensus 13 ~~~~~~~~~v~IiG~-G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~-----------~~g~~~~~~d~~~~~~l~~~ 80 (155)
T 2g1u_A 13 MSKKQKSKYIVIFGC-GRLGSLIANLASSSGHSVVVVDKNEYAFHRLNS-----------EFSGFTVVGDAAEFETLKEC 80 (155)
T ss_dssp ----CCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT-----------TCCSEEEESCTTSHHHHHTT
T ss_pred hhcccCCCcEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh-----------cCCCcEEEecCCCHHHHHHc
Confidence 334678999999997 999999999999999999999999876433210 12234567888876543221
Q ss_pred HHHHHhcCCCeeEEEEcCC
Q psy13409 90 AQEILDNESAIHLLINNAG 108 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG 108 (330)
.....|++|.+.+
T Consensus 81 ------~~~~ad~Vi~~~~ 93 (155)
T 2g1u_A 81 ------GMEKADMVFAFTN 93 (155)
T ss_dssp ------TGGGCSEEEECSS
T ss_pred ------CcccCCEEEEEeC
Confidence 1235799999886
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00044 Score=67.54 Aligned_cols=85 Identities=20% Similarity=0.327 Sum_probs=60.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEE--Ecc--------CCCH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR--QLD--------LSSL 83 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i--~~D--------ls~~ 83 (330)
-.|++++|+||+|+||...+..+...|++|+++++++++++.+ +++ +....+- ..| .++.
T Consensus 227 ~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~-~~l---------Ga~~vi~~~~~d~~~~~~~~~~~~ 296 (456)
T 3krt_A 227 KQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEIC-RAM---------GAEAIIDRNAEGYRFWKDENTQDP 296 (456)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHH---------TCCEEEETTTTTCCSEEETTEECH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHH-Hhh---------CCcEEEecCcCcccccccccccch
Confidence 3689999999999999999999889999999999988776654 222 2221111 111 2345
Q ss_pred HHHHHHHHHHHhcC--CCeeEEEEcCC
Q psy13409 84 KSVRKCAQEILDNE--SAIHLLINNAG 108 (330)
Q Consensus 84 ~si~~l~~~i~~~~--g~iDvlInnAG 108 (330)
++++.+.+.+.+.. ..+|++|+++|
T Consensus 297 ~~~~~~~~~i~~~t~g~g~Dvvid~~G 323 (456)
T 3krt_A 297 KEWKRFGKRIRELTGGEDIDIVFEHPG 323 (456)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEEEECSC
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEcCC
Confidence 56666666666633 37999999998
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00025 Score=63.94 Aligned_cols=83 Identities=16% Similarity=0.186 Sum_probs=63.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecCh-------------------hHHHHHHHHHHHhhcccCCCCe
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSL-------------------EKAETAADDIRTSLKDVKDAGE 72 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~-------------------~~l~~~~~~l~~~~~~~~~~~~ 72 (330)
+|++++|+|.|+ ||+|.++++.|+..|. +|++++++. .+.+.+.+.+.+.. +..+
T Consensus 28 ~l~~~~VlVvG~-Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n----p~~~ 102 (249)
T 1jw9_B 28 ALKDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRIN----PHIA 102 (249)
T ss_dssp HHHHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHC----TTSE
T ss_pred HHhCCeEEEEee-CHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHC----CCcE
Confidence 467899999998 8999999999999997 899999987 77777777776643 3456
Q ss_pred EEEEEccCCCHHHHHHHHHHHHhcCCCeeEEEEcCC
Q psy13409 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAG 108 (330)
Q Consensus 73 v~~i~~Dls~~~si~~l~~~i~~~~g~iDvlInnAG 108 (330)
+..+..++++ +.++.++. ..|++|.+..
T Consensus 103 v~~~~~~~~~-~~~~~~~~-------~~DvVi~~~d 130 (249)
T 1jw9_B 103 ITPVNALLDD-AELAALIA-------EHDLVLDCTD 130 (249)
T ss_dssp EEEECSCCCH-HHHHHHHH-------TSSEEEECCS
T ss_pred EEEEeccCCH-hHHHHHHh-------CCCEEEEeCC
Confidence 7777777763 33443332 4699998874
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00074 Score=62.08 Aligned_cols=77 Identities=21% Similarity=0.381 Sum_probs=58.7
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.++++|+++|+|+ ||+|++++..|++.|+ +|++++|+.++.+++.+++... ..+..... +++
T Consensus 122 ~~l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~-------~~~~~~~~-----~~l---- 184 (281)
T 3o8q_A 122 VLLKGATILLIGA-GGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAY-------GEVKAQAF-----EQL---- 184 (281)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGG-------SCEEEEEG-----GGC----
T ss_pred CCccCCEEEEECc-hHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhcc-------CCeeEeeH-----HHh----
Confidence 4689999999998 7999999999999996 9999999999988888776542 12333322 111
Q ss_pred HHHHhcCCCeeEEEEcCCCCC
Q psy13409 91 QEILDNESAIHLLINNAGVMM 111 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~ 111 (330)
....|++||+.....
T Consensus 185 ------~~~aDiIInaTp~gm 199 (281)
T 3o8q_A 185 ------KQSYDVIINSTSASL 199 (281)
T ss_dssp ------CSCEEEEEECSCCCC
T ss_pred ------cCCCCEEEEcCcCCC
Confidence 135799999987654
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00029 Score=66.83 Aligned_cols=99 Identities=16% Similarity=0.213 Sum_probs=67.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.|++++|+|+ |+||...+..+...|++|+++++++++++...+++ +... ..|..+.+.+.
T Consensus 187 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~l---------Ga~~---v~~~~~~~~~~------- 246 (366)
T 1yqd_A 187 PGKHIGIVGL-GGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNF---------GADS---FLVSRDQEQMQ------- 246 (366)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTS---------CCSE---EEETTCHHHHH-------
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc---------CCce---EEeccCHHHHH-------
Confidence 7999999996 99999999999999999999999988765543221 2221 23555544332
Q ss_pred hcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCC
Q psy13409 95 DNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLA 158 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~ 158 (330)
+..+.+|++|+++|... .++..++.+.. +|++|++++..
T Consensus 247 ~~~~~~D~vid~~g~~~-----------------------~~~~~~~~l~~--~G~iv~~g~~~ 285 (366)
T 1yqd_A 247 AAAGTLDGIIDTVSAVH-----------------------PLLPLFGLLKS--HGKLILVGAPE 285 (366)
T ss_dssp HTTTCEEEEEECCSSCC-----------------------CSHHHHHHEEE--EEEEEECCCCS
T ss_pred HhhCCCCEEEECCCcHH-----------------------HHHHHHHHHhc--CCEEEEEccCC
Confidence 22357999999998531 02233444433 58999998754
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00084 Score=62.07 Aligned_cols=93 Identities=13% Similarity=0.282 Sum_probs=70.2
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecCh------------------hHHHHHHHHHHHhhcccCCCC
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSL------------------EKAETAADDIRTSLKDVKDAG 71 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~------------------~~l~~~~~~l~~~~~~~~~~~ 71 (330)
..+|++++|+|.|+ ||+|.++++.|+..|. ++.+++.+. .+.+.+.+.+++. ++..
T Consensus 31 q~kL~~~~VlVvGa-GGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~i----NP~v 105 (292)
T 3h8v_A 31 YEKIRTFAVAIVGV-GGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNI----NPDV 105 (292)
T ss_dssp -CGGGGCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHH----CTTS
T ss_pred HHHHhCCeEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhh----CCCc
Confidence 34688999999998 9999999999999997 899998765 5555566666554 3567
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHhc----CCCeeEEEEcCC
Q psy13409 72 EVVIRQLDLSSLKSVRKCAQEILDN----ESAIHLLINNAG 108 (330)
Q Consensus 72 ~v~~i~~Dls~~~si~~l~~~i~~~----~g~iDvlInnAG 108 (330)
++..+..++++.+.++.+++.+... ....|++|.+..
T Consensus 106 ~v~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~D 146 (292)
T 3h8v_A 106 LFEVHNYNITTVENFQHFMDRISNGGLEEGKPVDLVLSCVD 146 (292)
T ss_dssp EEEEECCCTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCS
T ss_pred EEEEecccCCcHHHHHHHhhhhcccccccCCCCCEEEECCc
Confidence 8888888998877777776544221 136799998774
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00019 Score=66.44 Aligned_cols=79 Identities=29% Similarity=0.314 Sum_probs=56.9
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.++++++++|+|+ ||+|++++..|++.|+ +|++++|+.++++++.+.+... ...+ + +.+++
T Consensus 137 ~~l~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~------~~~~--~-----~~~~~---- 198 (297)
T 2egg_A 137 ITLDGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDER------RSAY--F-----SLAEA---- 198 (297)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSS------SCCE--E-----CHHHH----
T ss_pred CCCCCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhc------cCce--e-----eHHHH----
Confidence 3578999999998 7999999999999998 9999999998877766554210 0011 1 22222
Q ss_pred HHHHhcCCCeeEEEEcCCCCC
Q psy13409 91 QEILDNESAIHLLINNAGVMM 111 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~ 111 (330)
.+.....|++||+++...
T Consensus 199 ---~~~~~~aDivIn~t~~~~ 216 (297)
T 2egg_A 199 ---ETRLAEYDIIINTTSVGM 216 (297)
T ss_dssp ---HHTGGGCSEEEECSCTTC
T ss_pred ---HhhhccCCEEEECCCCCC
Confidence 222345799999998765
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00072 Score=63.24 Aligned_cols=101 Identities=15% Similarity=0.117 Sum_probs=68.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.|+++||+|+ |+||..++..+...|++|+++++++++++.+. ++ +.. ..+|.++.+ +...+.++.
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~l---------Ga~---~~~d~~~~~-~~~~~~~~~ 228 (339)
T 1rjw_A 164 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLELAK-EL---------GAD---LVVNPLKED-AAKFMKEKV 228 (339)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HT---------TCS---EEECTTTSC-HHHHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HC---------CCC---EEecCCCcc-HHHHHHHHh
Confidence 6899999999 88999999999999999999999988766442 21 222 124666543 322233332
Q ss_pred hcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCC
Q psy13409 95 DNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLA 158 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~ 158 (330)
+.+|++|+++|.. . .++..++.+.. +|++|.+++..
T Consensus 229 ---~~~d~vid~~g~~--------~---------------~~~~~~~~l~~--~G~~v~~g~~~ 264 (339)
T 1rjw_A 229 ---GGVHAAVVTAVSK--------P---------------AFQSAYNSIRR--GGACVLVGLPP 264 (339)
T ss_dssp ---SSEEEEEESSCCH--------H---------------HHHHHHHHEEE--EEEEEECCCCS
T ss_pred ---CCCCEEEECCCCH--------H---------------HHHHHHHHhhc--CCEEEEecccC
Confidence 5799999999842 1 13444454433 58999887754
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0006 Score=64.75 Aligned_cols=78 Identities=17% Similarity=0.152 Sum_probs=56.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
.+++++++|+|+ |++|++++..+...|++|++++|+.++++.+.+.... .+..+ ..+.+++...+.
T Consensus 164 ~l~~~~VlViGa-GgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~---------~~~~~---~~~~~~~~~~~~- 229 (361)
T 1pjc_A 164 GVKPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS---------RVELL---YSNSAEIETAVA- 229 (361)
T ss_dssp TBCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG---------GSEEE---ECCHHHHHHHHH-
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCc---------eeEee---eCCHHHHHHHHc-
Confidence 367899999999 9999999999999999999999999887766544321 12111 223344433322
Q ss_pred HHhcCCCeeEEEEcCCCC
Q psy13409 93 ILDNESAIHLLINNAGVM 110 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~ 110 (330)
..|++|++++..
T Consensus 230 ------~~DvVI~~~~~~ 241 (361)
T 1pjc_A 230 ------EADLLIGAVLVP 241 (361)
T ss_dssp ------TCSEEEECCCCT
T ss_pred ------CCCEEEECCCcC
Confidence 479999999864
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00056 Score=64.68 Aligned_cols=102 Identities=18% Similarity=0.268 Sum_probs=68.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.|+++||+||+|+||.+++..+...|++|+++++++++++.+.+ + +... . .|..+.+ +.+.+.+..
T Consensus 163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~-~---------Ga~~-~--~~~~~~~-~~~~~~~~~ 228 (362)
T 2c0c_A 163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS-L---------GCDR-P--INYKTEP-VGTVLKQEY 228 (362)
T ss_dssp TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-T---------TCSE-E--EETTTSC-HHHHHHHHC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH-c---------CCcE-E--EecCChh-HHHHHHHhc
Confidence 68999999999999999999999999999999999877654432 1 2222 2 2444432 333333321
Q ss_pred hcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCC
Q psy13409 95 DNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLA 158 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~ 158 (330)
.+.+|++|+++|. . ..+.+++.+.. +|++|.+++..
T Consensus 229 --~~g~D~vid~~g~---------~---------------~~~~~~~~l~~--~G~iv~~g~~~ 264 (362)
T 2c0c_A 229 --PEGVDVVYESVGG---------A---------------MFDLAVDALAT--KGRLIVIGFIS 264 (362)
T ss_dssp --TTCEEEEEECSCT---------H---------------HHHHHHHHEEE--EEEEEECCCGG
T ss_pred --CCCCCEEEECCCH---------H---------------HHHHHHHHHhc--CCEEEEEeCCC
Confidence 2469999999982 1 12334444433 58999988754
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0014 Score=61.42 Aligned_cols=78 Identities=17% Similarity=0.265 Sum_probs=55.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.|+++||+||+|+||.+.+..+...|++|+++++++++++.+.+ + +... + .|..+ ++.+.+.+.
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~-l---------Ga~~-v--i~~~~--~~~~~~~~~- 213 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKK-M---------GADI-V--LNHKE--SLLNQFKTQ- 213 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHH-H---------TCSE-E--ECTTS--CHHHHHHHH-
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-c---------CCcE-E--EECCc--cHHHHHHHh-
Confidence 69999999999999999999999999999999999887655432 2 2221 1 23332 222333333
Q ss_pred hcCCCeeEEEEcCCC
Q psy13409 95 DNESAIHLLINNAGV 109 (330)
Q Consensus 95 ~~~g~iDvlInnAG~ 109 (330)
..+.+|++|+++|.
T Consensus 214 -~~~g~Dvv~d~~g~ 227 (346)
T 3fbg_A 214 -GIELVDYVFCTFNT 227 (346)
T ss_dssp -TCCCEEEEEESSCH
T ss_pred -CCCCccEEEECCCc
Confidence 33479999999983
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0005 Score=65.72 Aligned_cols=78 Identities=18% Similarity=0.210 Sum_probs=58.1
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
.+.|++++|+|+ |+||+.+++.+...|++|++++|+.++++...+.+ +..+ .++.++.++++.++.
T Consensus 165 ~l~g~~V~ViG~-G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~---------g~~~---~~~~~~~~~l~~~l~- 230 (377)
T 2vhw_A 165 GVEPADVVVIGA-GTAGYNAARIANGMGATVTVLDINIDKLRQLDAEF---------CGRI---HTRYSSAYELEGAVK- 230 (377)
T ss_dssp TBCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT---------TTSS---EEEECCHHHHHHHHH-
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhc---------CCee---EeccCCHHHHHHHHc-
Confidence 588999999999 99999999999999999999999988766554322 2222 123445555555443
Q ss_pred HHhcCCCeeEEEEcCCCC
Q psy13409 93 ILDNESAIHLLINNAGVM 110 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~ 110 (330)
..|++|++++..
T Consensus 231 ------~aDvVi~~~~~p 242 (377)
T 2vhw_A 231 ------RADLVIGAVLVP 242 (377)
T ss_dssp ------HCSEEEECCCCT
T ss_pred ------CCCEEEECCCcC
Confidence 369999998854
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.001 Score=62.38 Aligned_cols=79 Identities=15% Similarity=0.161 Sum_probs=54.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
+++++|+||+|+||.+.+..+...|++|++++++.++++.+. ++ +... ..|..+.+-.+.+. +...
T Consensus 165 ~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~~---------Ga~~---~~~~~~~~~~~~v~-~~~~ 230 (349)
T 3pi7_A 165 EKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLK-DI---------GAAH---VLNEKAPDFEATLR-EVMK 230 (349)
T ss_dssp CSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHH-HH---------TCSE---EEETTSTTHHHHHH-HHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-Hc---------CCCE---EEECCcHHHHHHHH-HHhc
Confidence 489999999999999999999899999999999988866543 22 2221 23454433333332 2221
Q ss_pred cCCCeeEEEEcCCC
Q psy13409 96 NESAIHLLINNAGV 109 (330)
Q Consensus 96 ~~g~iDvlInnAG~ 109 (330)
. ..+|++|+++|.
T Consensus 231 ~-~g~D~vid~~g~ 243 (349)
T 3pi7_A 231 A-EQPRIFLDAVTG 243 (349)
T ss_dssp H-HCCCEEEESSCH
T ss_pred C-CCCcEEEECCCC
Confidence 1 258999999983
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0013 Score=61.54 Aligned_cols=76 Identities=25% Similarity=0.394 Sum_probs=52.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.|+++||+||+|+||.+.+..+...|++|+++ ++.++++.+ +++ +... +| .+.+ +...+.+..
T Consensus 150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~-~~l---------Ga~~----i~-~~~~-~~~~~~~~~ 212 (343)
T 3gaz_A 150 DGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYV-RDL---------GATP----ID-ASRE-PEDYAAEHT 212 (343)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHH-HHH---------TSEE----EE-TTSC-HHHHHHHHH
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHH-HHc---------CCCE----ec-cCCC-HHHHHHHHh
Confidence 68999999999999999999999999999999 777765433 222 2332 34 3322 333333332
Q ss_pred hcCCCeeEEEEcCC
Q psy13409 95 DNESAIHLLINNAG 108 (330)
Q Consensus 95 ~~~g~iDvlInnAG 108 (330)
. ...+|++|+++|
T Consensus 213 ~-~~g~D~vid~~g 225 (343)
T 3gaz_A 213 A-GQGFDLVYDTLG 225 (343)
T ss_dssp T-TSCEEEEEESSC
T ss_pred c-CCCceEEEECCC
Confidence 2 236999999998
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0018 Score=60.59 Aligned_cols=103 Identities=19% Similarity=0.217 Sum_probs=67.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
.|+++||+|+ |+||...+..+...|+ +|+++++++++++.+. ++ +... ..|..+++ +.+.+.++
T Consensus 167 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~-~~---------Ga~~---~~~~~~~~-~~~~v~~~ 231 (348)
T 2d8a_A 167 SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEPSDFRRELAK-KV---------GADY---VINPFEED-VVKEVMDI 231 (348)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHH-HH---------TCSE---EECTTTSC-HHHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-Hh---------CCCE---EECCCCcC-HHHHHHHH
Confidence 8999999999 9999999999989999 8999999987765442 22 2211 13554433 22222222
Q ss_pred HhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCC
Q psy13409 94 LDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLA 158 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~ 158 (330)
.. ...+|++|+++|.. + .++.+++.+.. +|++|.+++..
T Consensus 232 ~~-g~g~D~vid~~g~~--------~---------------~~~~~~~~l~~--~G~iv~~g~~~ 270 (348)
T 2d8a_A 232 TD-GNGVDVFLEFSGAP--------K---------------ALEQGLQAVTP--AGRVSLLGLYP 270 (348)
T ss_dssp TT-TSCEEEEEECSCCH--------H---------------HHHHHHHHEEE--EEEEEECCCCS
T ss_pred cC-CCCCCEEEECCCCH--------H---------------HHHHHHHHHhc--CCEEEEEccCC
Confidence 11 12599999999841 1 13444554533 58999988754
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00072 Score=62.08 Aligned_cols=42 Identities=21% Similarity=0.321 Sum_probs=38.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETA 56 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~ 56 (330)
.|++++|+|++|++|.+++..+...|++|+++++++++++.+
T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~ 166 (302)
T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALP 166 (302)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 689999999999999999999999999999999998876544
|
| >1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00088 Score=62.44 Aligned_cols=98 Identities=15% Similarity=0.145 Sum_probs=62.3
Q ss_pred CCCCCE-EEEEcCCC-----------------c-hHHHHHHHHHHCCCEEEEEecChhHHHHHH------HHHHHhhccc
Q psy13409 13 RLDGKT-AIVTGSNT-----------------G-IGKCTANELAKRGARVIMACRSLEKAETAA------DDIRTSLKDV 67 (330)
Q Consensus 13 ~~~gk~-aLITGas~-----------------g-IG~aia~~L~~~G~~Vil~~R~~~~l~~~~------~~l~~~~~~~ 67 (330)
++.||+ ||||+|+. | .|.++|+.++..|+.|+++.+..+- .... ..+.-.....
T Consensus 33 ~l~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga~V~lv~g~~sl-~p~~r~~~~~~~~~~~~~~~ 111 (313)
T 1p9o_A 33 GAQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARSA-FPYAHRFPPQTWLSALRPSG 111 (313)
T ss_dssp HHTTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTCEEEEEEETTSC-CTTGGGSCHHHHHHHCEECC
T ss_pred hhcCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCCEEEEEecCCCc-CcchhccCccchhhhhcccc
Confidence 368888 99998754 5 9999999999999999999885431 1000 0011000000
Q ss_pred CCCCeEEEEEccCCCHHHHHHHHHHH------------------------------HhcCCCeeEEEEcCCCCC
Q psy13409 68 KDAGEVVIRQLDLSSLKSVRKCAQEI------------------------------LDNESAIHLLINNAGVMM 111 (330)
Q Consensus 68 ~~~~~v~~i~~Dls~~~si~~l~~~i------------------------------~~~~g~iDvlInnAG~~~ 111 (330)
..+..+..+..|+...+++...+... .+.++..|++|.+|++.-
T Consensus 112 ~~~~~~~~i~v~v~sa~~m~~av~~~~~~~~~~~l~~i~f~tv~eyl~~L~~~~~~l~~~~~~di~i~aAAVsD 185 (313)
T 1p9o_A 112 PALSGLLSLEAEENALPGFAEALRSYQEAAAAGTFLVVEFTTLADYLHLLQAAAQALNPLGPSAMFYLAAAVSD 185 (313)
T ss_dssp C-CCSEEEEEEETTTSTTHHHHHHHHHHHHHHTCEEEEEECBHHHHHHHHHHHHHHHGGGGGGEEEEECSBCCS
T ss_pred ccccccceeeeccccHHHHHHHHHHHhhhhccccceeeccccHHHHHHHHHHhhHHhhccCCCCEEEECCchhh
Confidence 01234456677777766666655433 244577899999999864
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0018 Score=52.55 Aligned_cols=74 Identities=11% Similarity=0.093 Sum_probs=56.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
.++++|.|+ |.+|..+++.|.+.|++|++++++++..++..+ ..+.++.+|.++++.++++
T Consensus 7 ~~~viIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~------------~g~~~i~gd~~~~~~l~~a------ 67 (140)
T 3fwz_A 7 CNHALLVGY-GRVGSLLGEKLLASDIPLVVIETSRTRVDELRE------------RGVRAVLGNAANEEIMQLA------ 67 (140)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH------------TTCEEEESCTTSHHHHHHT------
T ss_pred CCCEEEECc-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH------------cCCCEEECCCCCHHHHHhc------
Confidence 346778887 899999999999999999999999987665432 1345788999998765443
Q ss_pred cCCCeeEEEEcCC
Q psy13409 96 NESAIHLLINNAG 108 (330)
Q Consensus 96 ~~g~iDvlInnAG 108 (330)
.....|++|.+.+
T Consensus 68 ~i~~ad~vi~~~~ 80 (140)
T 3fwz_A 68 HLECAKWLILTIP 80 (140)
T ss_dssp TGGGCSEEEECCS
T ss_pred CcccCCEEEEECC
Confidence 1134688887775
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00093 Score=56.59 Aligned_cols=78 Identities=14% Similarity=0.110 Sum_probs=57.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHC-CCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKR-GARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~-G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
++.+++++|.|+ |.+|..+++.|.+. |++|+++++++++.+... + .+ +..+.+|.++.+.+.++
T Consensus 36 ~~~~~~v~IiG~-G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~----~------~g--~~~~~gd~~~~~~l~~~-- 100 (183)
T 3c85_A 36 NPGHAQVLILGM-GRIGTGAYDELRARYGKISLGIEIREEAAQQHR----S------EG--RNVISGDATDPDFWERI-- 100 (183)
T ss_dssp CCTTCSEEEECC-SHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHH----H------TT--CCEEECCTTCHHHHHTB--
T ss_pred CCCCCcEEEECC-CHHHHHHHHHHHhccCCeEEEEECCHHHHHHHH----H------CC--CCEEEcCCCCHHHHHhc--
Confidence 466888999985 99999999999999 999999999987765432 2 12 34567899887644321
Q ss_pred HHHhcCCCeeEEEEcCC
Q psy13409 92 EILDNESAIHLLINNAG 108 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG 108 (330)
......|++|.+.+
T Consensus 101 ---~~~~~ad~vi~~~~ 114 (183)
T 3c85_A 101 ---LDTGHVKLVLLAMP 114 (183)
T ss_dssp ---CSCCCCCEEEECCS
T ss_pred ---cCCCCCCEEEEeCC
Confidence 01346799998775
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0013 Score=60.16 Aligned_cols=77 Identities=13% Similarity=0.315 Sum_probs=57.2
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.+++||+++|+|+ ||+|++++..|++.|+ +|++++|+.++.+++.+++.. ..+..+ ++.+ +.
T Consensus 116 ~~l~~k~~lvlGa-Gg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~--------~~~~~~--~~~~---l~--- 178 (272)
T 3pwz_A 116 EPLRNRRVLLLGA-GGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDH--------SRLRIS--RYEA---LE--- 178 (272)
T ss_dssp CCCTTSEEEEECC-SHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCC--------TTEEEE--CSGG---GT---
T ss_pred CCccCCEEEEECc-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcc--------CCeeEe--eHHH---hc---
Confidence 4689999999998 7999999999999996 999999999988887766531 123333 2211 11
Q ss_pred HHHHhcCCCeeEEEEcCCCCC
Q psy13409 91 QEILDNESAIHLLINNAGVMM 111 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~ 111 (330)
+ ...|++||+.....
T Consensus 179 ----~--~~~DivInaTp~gm 193 (272)
T 3pwz_A 179 ----G--QSFDIVVNATSASL 193 (272)
T ss_dssp ----T--CCCSEEEECSSGGG
T ss_pred ----c--cCCCEEEECCCCCC
Confidence 1 35799999987653
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0023 Score=55.79 Aligned_cols=73 Identities=18% Similarity=0.131 Sum_probs=56.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhcC
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNE 97 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~~ 97 (330)
+++|+|+ |.+|..+++.|.+.|++|++++++++..++..+. ..+.++.+|.++++.++++ ..
T Consensus 2 ~iiIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~-----------~~~~~i~gd~~~~~~l~~a------~i 63 (218)
T 3l4b_C 2 KVIIIGG-ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKK-----------LKATIIHGDGSHKEILRDA------EV 63 (218)
T ss_dssp CEEEECC-HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH-----------SSSEEEESCTTSHHHHHHH------TC
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH-----------cCCeEEEcCCCCHHHHHhc------Cc
Confidence 5899997 9999999999999999999999998876654322 1346789999998766543 12
Q ss_pred CCeeEEEEcCC
Q psy13409 98 SAIHLLINNAG 108 (330)
Q Consensus 98 g~iDvlInnAG 108 (330)
...|++|.+.+
T Consensus 64 ~~ad~vi~~~~ 74 (218)
T 3l4b_C 64 SKNDVVVILTP 74 (218)
T ss_dssp CTTCEEEECCS
T ss_pred ccCCEEEEecC
Confidence 35688887765
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00055 Score=55.89 Aligned_cols=44 Identities=16% Similarity=0.249 Sum_probs=39.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHH
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDI 60 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l 60 (330)
+++++|.|+ |++|+.++..|.+.|++|++.+|+.++.++..+.+
T Consensus 21 ~~~v~iiG~-G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~ 64 (144)
T 3oj0_A 21 GNKILLVGN-GMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKY 64 (144)
T ss_dssp CCEEEEECC-SHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHh
Confidence 899999997 99999999999999999999999998877665543
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0032 Score=56.70 Aligned_cols=83 Identities=14% Similarity=0.229 Sum_probs=60.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecCh-------------------hHHHHHHHHHHHhhcccCCCCe
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSL-------------------EKAETAADDIRTSLKDVKDAGE 72 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~-------------------~~l~~~~~~l~~~~~~~~~~~~ 72 (330)
+|++++|+|.|+ ||+|.++++.|+..|. ++.+++++. .+.+.+.+.+++.. +..+
T Consensus 25 ~l~~~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n----p~~~ 99 (251)
T 1zud_1 25 KLLDSQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLN----PDIQ 99 (251)
T ss_dssp HHHTCEEEEECC-STTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHC----TTSE
T ss_pred HHhcCcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHC----CCCE
Confidence 478899999998 8899999999999998 788886542 56666666666543 4567
Q ss_pred EEEEEccCCCHHHHHHHHHHHHhcCCCeeEEEEcCC
Q psy13409 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAG 108 (330)
Q Consensus 73 v~~i~~Dls~~~si~~l~~~i~~~~g~iDvlInnAG 108 (330)
+..+..+++. +.++.+++ ..|++|++..
T Consensus 100 v~~~~~~~~~-~~~~~~~~-------~~DvVi~~~d 127 (251)
T 1zud_1 100 LTALQQRLTG-EALKDAVA-------RADVVLDCTD 127 (251)
T ss_dssp EEEECSCCCH-HHHHHHHH-------HCSEEEECCS
T ss_pred EEEEeccCCH-HHHHHHHh-------cCCEEEECCC
Confidence 7777766654 44444443 2599998864
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.003 Score=59.80 Aligned_cols=77 Identities=18% Similarity=0.382 Sum_probs=52.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
-.|++++|+||+|+||...+..+...|++|++++ +.++++.+ +++ +... . .|..+.+-. +.+
T Consensus 182 ~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~-~~l---------Ga~~-v--~~~~~~~~~----~~~ 243 (375)
T 2vn8_A 182 CTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELV-RKL---------GADD-V--IDYKSGSVE----EQL 243 (375)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHH-HHT---------TCSE-E--EETTSSCHH----HHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHH-HHc---------CCCE-E--EECCchHHH----HHH
Confidence 3689999999999999999998888999999988 44554332 221 2222 1 355443322 223
Q ss_pred HhcCCCeeEEEEcCCC
Q psy13409 94 LDNESAIHLLINNAGV 109 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~ 109 (330)
.+. +.+|++|+++|.
T Consensus 244 ~~~-~g~D~vid~~g~ 258 (375)
T 2vn8_A 244 KSL-KPFDFILDNVGG 258 (375)
T ss_dssp HTS-CCBSEEEESSCT
T ss_pred hhc-CCCCEEEECCCC
Confidence 332 579999999984
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.036 Score=50.35 Aligned_cols=43 Identities=19% Similarity=0.134 Sum_probs=38.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDI 60 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l 60 (330)
+++.|.|+ |.+|..+|..|++.|++|++.+|+++.+++..+.+
T Consensus 5 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 47 (283)
T 4e12_A 5 TNVTVLGT-GVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRF 47 (283)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHH
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHH
Confidence 67888887 88999999999999999999999998888777664
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0034 Score=59.23 Aligned_cols=117 Identities=16% Similarity=0.141 Sum_probs=72.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCC--EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGA--RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
++++++.|+|++|.+|..++..++..|. +|++++.+.++++....+++... . ...++.+ . ++ ....+
T Consensus 6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~--~-~~~~i~~-t---~d---~~~al- 74 (343)
T 3fi9_A 6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCG--F-EGLNLTF-T---SD---IKEAL- 74 (343)
T ss_dssp SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHC--C-TTCCCEE-E---SC---HHHHH-
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCc--C-CCCceEE-c---CC---HHHHh-
Confidence 5678999999999999999999999994 79999999988777666666531 1 1122321 1 12 22222
Q ss_pred HHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCC-Ce-EEEEc
Q psy13409 92 EILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAP-AR-IINLS 155 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~-g~-IV~iS 155 (330)
..-|++|.+||....+ ..+ -.+.+..|..- ++.+.+.+.+... +. ++++|
T Consensus 75 ------~dADvVvitaG~p~kp-G~~---R~dLl~~N~~I----~~~i~~~i~~~~p~a~~vlvvs 126 (343)
T 3fi9_A 75 ------TDAKYIVSSGGAPRKE-GMT---REDLLKGNAEI----AAQLGKDIKSYCPDCKHVIIIF 126 (343)
T ss_dssp ------TTEEEEEECCC--------C---HHHHHHHHHHH----HHHHHHHHHHHCTTCCEEEECS
T ss_pred ------CCCCEEEEccCCCCCC-CCC---HHHHHHHHHHH----HHHHHHHHHHhccCcEEEEEec
Confidence 2469999999975332 222 33445566655 5556666655543 43 45554
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0059 Score=57.55 Aligned_cols=78 Identities=18% Similarity=0.233 Sum_probs=54.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.|+++||+| +|+||...+..+...|++|+++++++++++.+ +++ +... . .| .+.+++.+.+.++.
T Consensus 189 ~g~~VlV~G-~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~-~~l---------Ga~~-v--i~-~~~~~~~~~v~~~~ 253 (363)
T 3uog_A 189 AGDRVVVQG-TGGVALFGLQIAKATGAEVIVTSSSREKLDRA-FAL---------GADH-G--IN-RLEEDWVERVYALT 253 (363)
T ss_dssp TTCEEEEES-SBHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-HHH---------TCSE-E--EE-TTTSCHHHHHHHHH
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEecCchhHHHH-HHc---------CCCE-E--Ec-CCcccHHHHHHHHh
Confidence 689999999 79999999998888999999999998876653 222 2221 2 24 33333333333332
Q ss_pred hcCCCeeEEEEcCC
Q psy13409 95 DNESAIHLLINNAG 108 (330)
Q Consensus 95 ~~~g~iDvlInnAG 108 (330)
. ...+|++|+++|
T Consensus 254 ~-g~g~D~vid~~g 266 (363)
T 3uog_A 254 G-DRGADHILEIAG 266 (363)
T ss_dssp T-TCCEEEEEEETT
T ss_pred C-CCCceEEEECCC
Confidence 2 236999999998
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0071 Score=56.82 Aligned_cols=83 Identities=20% Similarity=0.201 Sum_probs=57.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCE-EEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGAR-VIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~-Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
.|+++||+|+ |++|...+..+...|++ |+++++++++++.+. ++ . ..+..+..|-.+.+++.+.+.+.
T Consensus 179 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~l-~--------~~~~~~~~~~~~~~~~~~~v~~~ 247 (363)
T 3m6i_A 179 LGDPVLICGA-GPIGLITMLCAKAAGACPLVITDIDEGRLKFAK-EI-C--------PEVVTHKVERLSAEESAKKIVES 247 (363)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHH-HH-C--------TTCEEEECCSCCHHHHHHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-Hh-c--------hhcccccccccchHHHHHHHHHH
Confidence 6899999998 99999999888889997 999999988766543 32 1 12333445544445544443333
Q ss_pred HhcCCCeeEEEEcCCC
Q psy13409 94 LDNESAIHLLINNAGV 109 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~ 109 (330)
.. ...+|++|.++|.
T Consensus 248 t~-g~g~Dvvid~~g~ 262 (363)
T 3m6i_A 248 FG-GIEPAVALECTGV 262 (363)
T ss_dssp TS-SCCCSEEEECSCC
T ss_pred hC-CCCCCEEEECCCC
Confidence 21 2369999999983
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.014 Score=54.63 Aligned_cols=119 Identities=18% Similarity=0.074 Sum_probs=72.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
++.+++.|+|+ |.+|.+++..|+..|. +|++.+++.++++....++...........++... .| .+.
T Consensus 5 m~~~kI~viGa-G~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t-~d---~~a------- 72 (324)
T 3gvi_A 5 MARNKIALIGS-GMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGA-ND---YAA------- 72 (324)
T ss_dssp -CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEE-SS---GGG-------
T ss_pred CcCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEe-CC---HHH-------
Confidence 45678999998 9999999999999998 99999999988765555555432111113334321 22 111
Q ss_pred HHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcC
Q psy13409 93 ILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSS 156 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS 156 (330)
...-|++|..+|....+. ++. .+.+..|..- ++.+.+.+.+.. .+.+|++|-
T Consensus 73 ----~~~aDiVIiaag~p~k~G-~~R---~dl~~~N~~i----~~~i~~~i~~~~p~a~iivvtN 125 (324)
T 3gvi_A 73 ----IEGADVVIVTAGVPRKPG-MSR---DDLLGINLKV----MEQVGAGIKKYAPEAFVICITN 125 (324)
T ss_dssp ----GTTCSEEEECCSCCCC---------CHHHHHHHHH----HHHHHHHHHHHCTTCEEEECCS
T ss_pred ----HCCCCEEEEccCcCCCCC-CCH---HHHHHhhHHH----HHHHHHHHHHHCCCeEEEecCC
Confidence 234599999999754332 222 2334455444 556666665554 355555553
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.023 Score=52.91 Aligned_cols=119 Identities=19% Similarity=0.154 Sum_probs=72.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecC--hhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRS--LEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~--~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
.++.+++.|+|+ |.+|..++..|+..|. +|++.+++ .+.++....++....+......++... .| .+
T Consensus 5 ~~~~~kv~ViGa-G~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t-~d---~~----- 74 (315)
T 3tl2_A 5 TIKRKKVSVIGA-GFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGT-SD---YA----- 74 (315)
T ss_dssp CCCCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEE-SC---GG-----
T ss_pred ccCCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEc-CC---HH-----
Confidence 346789999997 9999999999999999 99999999 555554444443321111122334321 12 11
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEc
Q psy13409 90 AQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLS 155 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iS 155 (330)
.+..-|++|.++|....+ .++. .+.+..|..- ++.+.+.+.+.. .+.++++|
T Consensus 75 ------a~~~aDvVIiaag~p~kp-g~~R---~dl~~~N~~i----~~~i~~~i~~~~p~a~vlvvs 127 (315)
T 3tl2_A 75 ------DTADSDVVVITAGIARKP-GMSR---DDLVATNSKI----MKSITRDIAKHSPNAIIVVLT 127 (315)
T ss_dssp ------GGTTCSEEEECCSCCCCT-TCCH---HHHHHHHHHH----HHHHHHHHHHHCTTCEEEECC
T ss_pred ------HhCCCCEEEEeCCCCCCC-CCCH---HHHHHHHHHH----HHHHHHHHHHhCCCeEEEECC
Confidence 123569999999976433 2222 3445566555 555555555544 35556555
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0035 Score=60.31 Aligned_cols=74 Identities=27% Similarity=0.443 Sum_probs=54.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
++.|++++|.|+ |+||+.+++.|...|+ +|++++|+.+++++..+.+ +.. . .+. +++..++.
T Consensus 164 ~l~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~---------g~~--~--~~~---~~l~~~l~ 226 (404)
T 1gpj_A 164 SLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL---------GGE--A--VRF---DELVDHLA 226 (404)
T ss_dssp CCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH---------TCE--E--CCG---GGHHHHHH
T ss_pred cccCCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc---------CCc--e--ecH---HhHHHHhc
Confidence 478999999998 9999999999999998 8999999988766555443 222 1 222 23333332
Q ss_pred HHHhcCCCeeEEEEcCCCC
Q psy13409 92 EILDNESAIHLLINNAGVM 110 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~ 110 (330)
..|++|++.+..
T Consensus 227 -------~aDvVi~at~~~ 238 (404)
T 1gpj_A 227 -------RSDVVVSATAAP 238 (404)
T ss_dssp -------TCSEEEECCSSS
T ss_pred -------CCCEEEEccCCC
Confidence 469999998754
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0056 Score=57.34 Aligned_cols=81 Identities=22% Similarity=0.247 Sum_probs=53.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCC-HHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSS-LKSVRKCAQEI 93 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~-~~si~~l~~~i 93 (330)
.|+++||+|+ |+||...+..+...|++|+++++++++++.+. ++ +.. .. .|.++ .+..+++.+..
T Consensus 168 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~l---------Ga~-~~--~~~~~~~~~~~~i~~~~ 233 (352)
T 1e3j_A 168 LGTTVLVIGA-GPIGLVSVLAAKAYGAFVVCTARSPRRLEVAK-NC---------GAD-VT--LVVDPAKEEESSIIERI 233 (352)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HT---------TCS-EE--EECCTTTSCHHHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH-Hh---------CCC-EE--EcCcccccHHHHHHHHh
Confidence 6899999997 89999999888889999999999987765432 21 222 12 24443 23233332222
Q ss_pred Hh-cCCCeeEEEEcCCC
Q psy13409 94 LD-NESAIHLLINNAGV 109 (330)
Q Consensus 94 ~~-~~g~iDvlInnAG~ 109 (330)
.+ ....+|++|+++|.
T Consensus 234 ~~~~g~g~D~vid~~g~ 250 (352)
T 1e3j_A 234 RSAIGDLPNVTIDCSGN 250 (352)
T ss_dssp HHHSSSCCSEEEECSCC
T ss_pred ccccCCCCCEEEECCCC
Confidence 10 12368999999984
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.022 Score=53.28 Aligned_cols=82 Identities=21% Similarity=0.107 Sum_probs=55.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
+.+++.|+|+ |.+|.+++..|+..|. +|++.++++++++.....+...........++... +|. +..+
T Consensus 8 ~~~kI~VIGa-G~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t----~d~---~ea~--- 76 (331)
T 1pzg_A 8 RRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAE----YSY---EAAL--- 76 (331)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEE----CSH---HHHH---
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEe----CCH---HHHh---
Confidence 3468999998 9999999999999998 99999999888777555444332211123344321 232 2122
Q ss_pred HhcCCCeeEEEEcCCCCC
Q psy13409 94 LDNESAIHLLINNAGVMM 111 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~ 111 (330)
..-|++|..+|...
T Consensus 77 ----~~aDiVi~a~g~p~ 90 (331)
T 1pzg_A 77 ----TGADCVIVTAGLTK 90 (331)
T ss_dssp ----TTCSEEEECCSCSS
T ss_pred ----CCCCEEEEccCCCC
Confidence 23599999998754
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.022 Score=53.10 Aligned_cols=118 Identities=17% Similarity=0.070 Sum_probs=73.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
++.+++.|+|+ |.+|.+++..|+..|. +|++.++++++++....+++..........++... .| .+.
T Consensus 3 m~~~kI~iiGa-G~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t-~d---~~a------- 70 (321)
T 3p7m_A 3 MARKKITLVGA-GNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGT-ND---YKD------- 70 (321)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEE-SC---GGG-------
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEc-CC---HHH-------
Confidence 34578999995 9999999999999988 99999999988776666665432111112333321 12 111
Q ss_pred HHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEc
Q psy13409 93 ILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLS 155 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iS 155 (330)
+..-|++|..+|....+ .++. .+.+..|..- ++.+.+.+.+.. .+.+|++|
T Consensus 71 ----~~~aDvVIi~ag~p~k~-G~~R---~dl~~~N~~i----~~~i~~~i~~~~p~a~vivvt 122 (321)
T 3p7m_A 71 ----LENSDVVIVTAGVPRKP-GMSR---DDLLGINIKV----MQTVGEGIKHNCPNAFVICIT 122 (321)
T ss_dssp ----GTTCSEEEECCSCCCCT-TCCH---HHHHHHHHHH----HHHHHHHHHHHCTTCEEEECC
T ss_pred ----HCCCCEEEEcCCcCCCC-CCCH---HHHHHHhHHH----HHHHHHHHHHHCCCcEEEEec
Confidence 23469999999975433 2232 3345555554 555555555554 35566554
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.031 Score=51.50 Aligned_cols=115 Identities=15% Similarity=0.132 Sum_probs=70.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCC--EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGA--RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
+++.|+|+ |.+|.+++..|+..|. +|++.++++++++....+++..........++... .| .+.
T Consensus 1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t-~d---~~a--------- 66 (294)
T 1oju_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG-AD---YSL--------- 66 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEE-SC---GGG---------
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEe-CC---HHH---------
Confidence 36889999 9999999999999997 89999999988764444444332211122333321 12 221
Q ss_pred hcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCC-CeEEEEc
Q psy13409 95 DNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAP-ARIINLS 155 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~-g~IV~iS 155 (330)
...-|++|..+|....+ .++. .+.+..|.- +++.+.+.+.+... +.++++|
T Consensus 67 --~~~aDiVViaag~~~kp-G~~R---~dl~~~N~~----i~~~i~~~i~~~~p~a~iivvs 118 (294)
T 1oju_A 67 --LKGSEIIVVTAGLARKP-GMTR---LDLAHKNAG----IIKDIAKKIVENAPESKILVVT 118 (294)
T ss_dssp --GTTCSEEEECCCCCCCS-SCCH---HHHHHHHHH----HHHHHHHHHHTTSTTCEEEECS
T ss_pred --hCCCCEEEECCCCCCCC-CCcH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeC
Confidence 12459999999976433 2232 333555543 36666666666554 5555554
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0022 Score=59.97 Aligned_cols=77 Identities=18% Similarity=0.278 Sum_probs=53.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
.|+++||+|+ |++|...+..+...|+ +|+++++++++++.+.+ + . . ...|..++ ++.+.+.++
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~-l-a--------~----~v~~~~~~-~~~~~~~~~ 227 (343)
T 2dq4_A 164 SGKSVLITGA-GPIGLMAAMVVRASGAGPILVSDPNPYRLAFARP-Y-A--------D----RLVNPLEE-DLLEVVRRV 227 (343)
T ss_dssp TTSCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTT-T-C--------S----EEECTTTS-CHHHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-h-H--------H----hccCcCcc-CHHHHHHHh
Confidence 8999999999 9999999998888999 89999999876543211 1 1 1 12355443 233333333
Q ss_pred HhcCCCeeEEEEcCCC
Q psy13409 94 LDNESAIHLLINNAGV 109 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~ 109 (330)
. ...+|++|+++|.
T Consensus 228 ~--~~g~D~vid~~g~ 241 (343)
T 2dq4_A 228 T--GSGVEVLLEFSGN 241 (343)
T ss_dssp H--SSCEEEEEECSCC
T ss_pred c--CCCCCEEEECCCC
Confidence 3 3469999999984
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.06 Score=50.28 Aligned_cols=117 Identities=14% Similarity=0.043 Sum_probs=74.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCC--EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGA--RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
+.+++.|+|+ |.+|.+++..|+..|. +|++++++.++++....+++...+... ..+.....|. +
T Consensus 4 ~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~--~~v~i~~~~~---~-------- 69 (326)
T 3pqe_A 4 HVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAP--QPVKTSYGTY---E-------- 69 (326)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSS--SCCEEEEECG---G--------
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhcccccc--CCeEEEeCcH---H--------
Confidence 4678999996 9999999999999997 899999999888877777765432211 2233332221 1
Q ss_pred HHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcC
Q psy13409 93 ILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSS 156 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS 156 (330)
....-|++|.++|....+ ..+ -.+.+..|..- ++.+.+.+.+.. .+.++++|-
T Consensus 70 ---a~~~aDvVvi~ag~p~kp-G~~---R~dL~~~N~~I----v~~i~~~I~~~~p~a~vlvvtN 123 (326)
T 3pqe_A 70 ---DCKDADIVCICAGANQKP-GET---RLELVEKNLKI----FKGIVSEVMASGFDGIFLVATN 123 (326)
T ss_dssp ---GGTTCSEEEECCSCCCCT-TCC---HHHHHHHHHHH----HHHHHHHHHHTTCCSEEEECSS
T ss_pred ---HhCCCCEEEEecccCCCC-Ccc---HHHHHHHHHHH----HHHHHHHHHHhcCCeEEEEcCC
Confidence 123469999999975432 222 23345566555 555555555544 355555553
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0062 Score=57.21 Aligned_cols=116 Identities=8% Similarity=-0.034 Sum_probs=70.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCC--E-----EEEEecCh--hHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGA--R-----VIMACRSL--EKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVR 87 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~--~-----Vil~~R~~--~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~ 87 (330)
++++||||+|.||.+++..|+..|. . |++++++. +.++....+++... ..-+.-+ ..++ ...
T Consensus 4 ~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~-----~~~~~~~--~~~~--~~~ 74 (333)
T 5mdh_A 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCA-----LPLLKDV--IATD--KEE 74 (333)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTC-----CTTEEEE--EEES--CHH
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhh-----hcccCCE--EEcC--CcH
Confidence 4799999999999999999998875 4 89999974 35555555565421 0111111 1111 111
Q ss_pred HHHHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCC-C-eEEEEcC
Q psy13409 88 KCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAP-A-RIINLSS 156 (330)
Q Consensus 88 ~l~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~-g-~IV~iSS 156 (330)
+. +..-|++|+.||....+ .+ +..+.++.|... ++.+.+.+.+.+. + .++++|-
T Consensus 75 ~~-------~~daDvVvitAg~prkp-G~---tR~dll~~N~~i----~~~i~~~i~~~~~~~~~vivvsN 130 (333)
T 5mdh_A 75 IA-------FKDLDVAILVGSMPRRD-GM---ERKDLLKANVKI----FKCQGAALDKYAKKSVKVIVVGN 130 (333)
T ss_dssp HH-------TTTCSEEEECCSCCCCT-TC---CTTTTHHHHHHH----HHHHHHHHHHHSCTTCEEEECSS
T ss_pred HH-------hCCCCEEEEeCCCCCCC-CC---CHHHHHHHHHHH----HHHHHHHHHHhCCCCeEEEEcCC
Confidence 11 23569999999875432 22 234456677766 5666666666654 4 4665553
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0023 Score=59.25 Aligned_cols=75 Identities=17% Similarity=0.268 Sum_probs=49.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhcC
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNE 97 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~~ 97 (330)
+++|+|++|++|...+..+...|++|+++++++++++.+. ++ +... . +|..+.+ ...+..+ ..
T Consensus 152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~-~l---------Ga~~-~--i~~~~~~--~~~~~~~--~~ 214 (328)
T 1xa0_A 152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLR-VL---------GAKE-V--LAREDVM--AERIRPL--DK 214 (328)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHH-HT---------TCSE-E--EECC-----------C--CS
T ss_pred eEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-Hc---------CCcE-E--EecCCcH--HHHHHHh--cC
Confidence 7999999999999999988889999999999987765442 21 2221 1 3444432 1122222 12
Q ss_pred CCeeEEEEcCCC
Q psy13409 98 SAIHLLINNAGV 109 (330)
Q Consensus 98 g~iDvlInnAG~ 109 (330)
+.+|++|+++|.
T Consensus 215 ~~~d~vid~~g~ 226 (328)
T 1xa0_A 215 QRWAAAVDPVGG 226 (328)
T ss_dssp CCEEEEEECSTT
T ss_pred CcccEEEECCcH
Confidence 469999999984
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.007 Score=56.83 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=33.5
Q ss_pred CC-CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhH
Q psy13409 15 DG-KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEK 52 (330)
Q Consensus 15 ~g-k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~ 52 (330)
.| .++||+||+|++|...+..+...|++|+++.++.++
T Consensus 166 ~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~ 204 (364)
T 1gu7_A 166 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPN 204 (364)
T ss_dssp TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTT
T ss_pred CCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccc
Confidence 57 999999999999999888877889999999877655
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.013 Score=55.52 Aligned_cols=80 Identities=20% Similarity=0.312 Sum_probs=53.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCC-CEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCC--CHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRG-ARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLS--SLKSVRKCAQ 91 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G-~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls--~~~si~~l~~ 91 (330)
.|+++||+| +|++|...+..+...| ++|+++++++++++.+. ++ +.. .++ |.. +.+++.+.+.
T Consensus 195 ~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~-~l---------Ga~-~vi--~~~~~~~~~~~~~v~ 260 (380)
T 1vj0_A 195 AGKTVVIQG-AGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE-EI---------GAD-LTL--NRRETSVEERRKAIM 260 (380)
T ss_dssp BTCEEEEEC-CSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH-HT---------TCS-EEE--ETTTSCHHHHHHHHH
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHH-Hc---------CCc-EEE--eccccCcchHHHHHH
Confidence 589999999 7999999999888899 59999999988765442 21 222 122 333 2333333333
Q ss_pred HHHhcCCCeeEEEEcCCC
Q psy13409 92 EILDNESAIHLLINNAGV 109 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~ 109 (330)
++.. ...+|++|+++|.
T Consensus 261 ~~~~-g~g~Dvvid~~g~ 277 (380)
T 1vj0_A 261 DITH-GRGADFILEATGD 277 (380)
T ss_dssp HHTT-TSCEEEEEECSSC
T ss_pred HHhC-CCCCcEEEECCCC
Confidence 3221 1259999999984
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.041 Score=51.05 Aligned_cols=116 Identities=14% Similarity=0.144 Sum_probs=71.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCC--EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGA--RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
++.+++.|+|+ |.+|..++..|+.+|. .|++.+++.++++.....+....... +..+.+.. | +.++
T Consensus 4 m~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~--~~~~~v~~-~--~~~a------ 71 (317)
T 3d0o_A 4 FKGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYS--PTTVRVKA-G--EYSD------ 71 (317)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGS--SSCCEEEE-C--CGGG------
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhc--CCCeEEEe-C--CHHH------
Confidence 45578999999 9999999999999884 89999999887776555555432221 12222222 2 2221
Q ss_pred HHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCC-CeEEEE
Q psy13409 92 EILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAP-ARIINL 154 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~-g~IV~i 154 (330)
+..-|++|..+|....+ ..+. .+.+..|.-- ++.+.+.+.+... +.+|++
T Consensus 72 -----~~~aDvVvi~ag~~~~~-g~~r---~dl~~~n~~i----~~~i~~~i~~~~p~a~viv~ 122 (317)
T 3d0o_A 72 -----CHDADLVVICAGAAQKP-GETR---LDLVSKNLKI----FKSIVGEVMASKFDGIFLVA 122 (317)
T ss_dssp -----GTTCSEEEECCCCCCCT-TCCH---HHHHHHHHHH----HHHHHHHHHHTTCCSEEEEC
T ss_pred -----hCCCCEEEECCCCCCCC-CCcH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEe
Confidence 23469999999976432 2222 2334444444 5555555555443 555553
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0074 Score=56.84 Aligned_cols=63 Identities=16% Similarity=0.248 Sum_probs=49.0
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecCh-------------------hHHHHHHHHHHHhhcccCCCCe
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSL-------------------EKAETAADDIRTSLKDVKDAGE 72 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~-------------------~~l~~~~~~l~~~~~~~~~~~~ 72 (330)
++++++|+|.|+ ||+|.++++.|+..|. ++.+++++. .+.+.+.+.+++.+ +..+
T Consensus 31 kL~~~~VlIvGa-GGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~in----P~v~ 105 (340)
T 3rui_A 31 IIKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIF----PLMD 105 (340)
T ss_dssp HHHTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHC----TTCE
T ss_pred HHhCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhC----CCCE
Confidence 478999999999 9999999999999997 788988743 45666666666553 4566
Q ss_pred EEEEEccC
Q psy13409 73 VVIRQLDL 80 (330)
Q Consensus 73 v~~i~~Dl 80 (330)
+..+..++
T Consensus 106 v~~~~~~i 113 (340)
T 3rui_A 106 ATGVKLSI 113 (340)
T ss_dssp EEEECCCC
T ss_pred EEEEeccc
Confidence 77776655
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.03 Score=51.96 Aligned_cols=113 Identities=21% Similarity=0.174 Sum_probs=67.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHCC--CEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRG--ARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G--~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
++.|+||+|.+|..++..|+..| ..|++++++. .+....++.... ...++..... .++.+..++
T Consensus 2 KI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~--~~~~a~dL~~~~----~~~~l~~~~~----t~d~~~a~~---- 67 (314)
T 1mld_A 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH--TPGVAADLSHIE----TRATVKGYLG----PEQLPDCLK---- 67 (314)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS--HHHHHHHHTTSS----SSCEEEEEES----GGGHHHHHT----
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc--cHHHHHHHhccC----cCceEEEecC----CCCHHHHhC----
Confidence 68999999999999999999988 6899999987 233333443211 1123332210 122332222
Q ss_pred cCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEc
Q psy13409 96 NESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLS 155 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iS 155 (330)
..|++|+.+|....+ ..+.. +.+..|... ++.+.+.+.+.. .+.+|++|
T Consensus 68 ---~aDvVvi~ag~~~~~-g~~r~---dl~~~n~~i----~~~i~~~i~~~~p~a~viv~s 117 (314)
T 1mld_A 68 ---GCDVVVIPAGVPRKP-GMTRD---DLFNTNATI----VATLTAACAQHCPDAMICIIS 117 (314)
T ss_dssp ---TCSEEEECCSCCCCT-TCCGG---GGHHHHHHH----HHHHHHHHHHHCTTSEEEECS
T ss_pred ---CCCEEEECCCcCCCC-CCcHH---HHHHHHHHH----HHHHHHHHHhhCCCeEEEEEC
Confidence 459999999976433 22222 345666666 444555444443 46666653
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0067 Score=56.46 Aligned_cols=77 Identities=17% Similarity=0.183 Sum_probs=54.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
-.|+++||+|+ |+||...+..+...|++|+++++++++++.+. ++ +... ..|..+.+-.+.+.+
T Consensus 165 ~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~l---------Ga~~---~i~~~~~~~~~~~~~-- 228 (340)
T 3s2e_A 165 RPGQWVVISGI-GGLGHVAVQYARAMGLRVAAVDIDDAKLNLAR-RL---------GAEV---AVNARDTDPAAWLQK-- 228 (340)
T ss_dssp CTTSEEEEECC-STTHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HT---------TCSE---EEETTTSCHHHHHHH--
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-Hc---------CCCE---EEeCCCcCHHHHHHH--
Confidence 36899999997 89999999888889999999999988766432 21 2222 135554433333322
Q ss_pred HhcCCCeeEEEEcCC
Q psy13409 94 LDNESAIHLLINNAG 108 (330)
Q Consensus 94 ~~~~g~iDvlInnAG 108 (330)
..+.+|++|.++|
T Consensus 229 --~~g~~d~vid~~g 241 (340)
T 3s2e_A 229 --EIGGAHGVLVTAV 241 (340)
T ss_dssp --HHSSEEEEEESSC
T ss_pred --hCCCCCEEEEeCC
Confidence 2357999999987
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.46 E-value=0.015 Score=54.69 Aligned_cols=78 Identities=19% Similarity=0.223 Sum_probs=53.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHC-CCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKR-GARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~-G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
.|.++||+|+ |++|...+..+... |++|+++++++++++.+. ++ +... + .|..+. +...+.++
T Consensus 186 ~g~~VlV~Ga-G~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~-~l---------Ga~~-v--i~~~~~--~~~~v~~~ 249 (359)
T 1h2b_A 186 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAE-RL---------GADH-V--VDARRD--PVKQVMEL 249 (359)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHH-HT---------TCSE-E--EETTSC--HHHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH-Hh---------CCCE-E--Eeccch--HHHHHHHH
Confidence 6899999999 89999998888788 999999999988765442 22 2221 1 355443 33333333
Q ss_pred HhcCCCeeEEEEcCCC
Q psy13409 94 LDNESAIHLLINNAGV 109 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~ 109 (330)
.. ...+|++|.++|.
T Consensus 250 ~~-g~g~Dvvid~~G~ 264 (359)
T 1h2b_A 250 TR-GRGVNVAMDFVGS 264 (359)
T ss_dssp TT-TCCEEEEEESSCC
T ss_pred hC-CCCCcEEEECCCC
Confidence 22 1269999999984
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0019 Score=59.18 Aligned_cols=43 Identities=23% Similarity=0.328 Sum_probs=38.1
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAET 55 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~ 55 (330)
.+++||+++|+|+ ||+|++++..|++.|+ +|+++.|+.++.++
T Consensus 113 ~~l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~ 156 (277)
T 3don_A 113 EGIEDAYILILGA-GGASKGIANELYKIVRPTLTVANRTMSRFNN 156 (277)
T ss_dssp TTGGGCCEEEECC-SHHHHHHHHHHHTTCCSCCEEECSCGGGGTT
T ss_pred CCcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence 3578999999998 7999999999999999 89999999876543
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0084 Score=56.61 Aligned_cols=79 Identities=16% Similarity=0.244 Sum_probs=54.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCC-HHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSS-LKSVRKCAQE 92 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~-~~si~~l~~~ 92 (330)
.|+++||+|+ |+||...+..+...|+ +|+++++++++++.+. ++ +... + .|.++ .+++...+.+
T Consensus 192 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~-~l---------Ga~~-v--i~~~~~~~~~~~~~~~ 257 (374)
T 1cdo_A 192 PGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK-VF---------GATD-F--VNPNDHSEPISQVLSK 257 (374)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HT---------TCCE-E--ECGGGCSSCHHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH-Hh---------CCce-E--EeccccchhHHHHHHH
Confidence 6899999996 9999999988888999 8999999988766442 21 2221 1 34433 1234444444
Q ss_pred HHhcCCCeeEEEEcCCC
Q psy13409 93 ILDNESAIHLLINNAGV 109 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~ 109 (330)
+.. +.+|++|+++|.
T Consensus 258 ~~~--~g~D~vid~~g~ 272 (374)
T 1cdo_A 258 MTN--GGVDFSLECVGN 272 (374)
T ss_dssp HHT--SCBSEEEECSCC
T ss_pred HhC--CCCCEEEECCCC
Confidence 433 479999999984
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.022 Score=53.35 Aligned_cols=79 Identities=23% Similarity=0.319 Sum_probs=52.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCC--CHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLS--SLKSVRKCAQ 91 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls--~~~si~~l~~ 91 (330)
.|.++||+|+ |+||...+..+...|+ +|+++++++++++.+. ++ +.. .+ .|.. +.++....+.
T Consensus 171 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~l---------Ga~-~v--i~~~~~~~~~~~~~i~ 236 (356)
T 1pl8_A 171 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK-EI---------GAD-LV--LQISKESPQEIARKVE 236 (356)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HT---------TCS-EE--EECSSCCHHHHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-Hh---------CCC-EE--EcCcccccchHHHHHH
Confidence 6899999996 8999999888888899 8999999987765432 21 222 12 2444 2233322222
Q ss_pred HHHhcCCCeeEEEEcCCC
Q psy13409 92 EILDNESAIHLLINNAGV 109 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~ 109 (330)
+... +.+|++|+++|.
T Consensus 237 ~~~~--~g~D~vid~~g~ 252 (356)
T 1pl8_A 237 GQLG--CKPEVTIECTGA 252 (356)
T ss_dssp HHHT--SCCSEEEECSCC
T ss_pred HHhC--CCCCEEEECCCC
Confidence 2222 468999999983
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.012 Score=55.64 Aligned_cols=74 Identities=19% Similarity=0.255 Sum_probs=53.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.|.++||+|+ |+||...+..+...|++|+++++++++++.+. ++ +... ..|..+.+.++ ++
T Consensus 194 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~-~l---------Ga~~---vi~~~~~~~~~----~~- 254 (369)
T 1uuf_A 194 PGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKREAAK-AL---------GADE---VVNSRNADEMA----AH- 254 (369)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH-HH---------TCSE---EEETTCHHHHH----TT-
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-Hc---------CCcE---EeccccHHHHH----Hh-
Confidence 6899999998 89999999888889999999999988766543 22 2221 23555543222 22
Q ss_pred hcCCCeeEEEEcCCC
Q psy13409 95 DNESAIHLLINNAGV 109 (330)
Q Consensus 95 ~~~g~iDvlInnAG~ 109 (330)
.+.+|++|+++|.
T Consensus 255 --~~g~Dvvid~~g~ 267 (369)
T 1uuf_A 255 --LKSFDFILNTVAA 267 (369)
T ss_dssp --TTCEEEEEECCSS
T ss_pred --hcCCCEEEECCCC
Confidence 1579999999985
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.01 Score=56.05 Aligned_cols=77 Identities=16% Similarity=0.235 Sum_probs=51.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHH-CCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAK-RGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~-~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
.|+++||+||+|++|...+..+.. .|++|+++++++++++.+. ++ +... + .|..+ ++ .+.+
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~-~l---------Gad~-v--i~~~~--~~---~~~v 232 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVK-SL---------GAHH-V--IDHSK--PL---AAEV 232 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHH-HT---------TCSE-E--ECTTS--CH---HHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHH-Hc---------CCCE-E--EeCCC--CH---HHHH
Confidence 689999999999999887766655 5899999999988765442 21 2222 1 24333 22 2333
Q ss_pred Hhc-CCCeeEEEEcCCC
Q psy13409 94 LDN-ESAIHLLINNAGV 109 (330)
Q Consensus 94 ~~~-~g~iDvlInnAG~ 109 (330)
.+. .+.+|++|.++|.
T Consensus 233 ~~~~~~g~Dvvid~~g~ 249 (363)
T 4dvj_A 233 AALGLGAPAFVFSTTHT 249 (363)
T ss_dssp HTTCSCCEEEEEECSCH
T ss_pred HHhcCCCceEEEECCCc
Confidence 332 3479999999983
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0057 Score=57.52 Aligned_cols=75 Identities=20% Similarity=0.239 Sum_probs=52.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.|+++||+|+ |+||...+..+...|++|+++++++++++.+. ++ +... + .|..+.++ +.+.+.
T Consensus 179 ~g~~VlV~Ga-G~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~-~l---------Ga~~-v--~~~~~~~~---~~~~~~ 241 (360)
T 1piw_A 179 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDAM-KM---------GADH-Y--IATLEEGD---WGEKYF 241 (360)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHHH-HH---------TCSE-E--EEGGGTSC---HHHHSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH-Hc---------CCCE-E--EcCcCchH---HHHHhh
Confidence 6899999999 99999999888888999999999988765443 22 2221 1 23333201 122221
Q ss_pred hcCCCeeEEEEcCCC
Q psy13409 95 DNESAIHLLINNAGV 109 (330)
Q Consensus 95 ~~~g~iDvlInnAG~ 109 (330)
+.+|++|.++|.
T Consensus 242 ---~~~D~vid~~g~ 253 (360)
T 1piw_A 242 ---DTFDLIVVCASS 253 (360)
T ss_dssp ---SCEEEEEECCSC
T ss_pred ---cCCCEEEECCCC
Confidence 579999999986
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=96.37 E-value=0.11 Score=48.70 Aligned_cols=119 Identities=13% Similarity=0.143 Sum_probs=75.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCC--EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGA--RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
+...+++.|+|+ |.+|..++..|+..|. .|++++++.++++....++....... ....+ ....|. +
T Consensus 16 ~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~-~~~~i-~~~~d~---~------ 83 (331)
T 4aj2_A 16 QVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFL-KTPKI-VSSKDY---S------ 83 (331)
T ss_dssp -CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGC-SCCEE-EECSSG---G------
T ss_pred cCCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhcc-CCCeE-EEcCCH---H------
Confidence 467789999998 9999999999999997 89999999988887777776532111 11122 112222 1
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcC
Q psy13409 91 QEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSS 156 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS 156 (330)
....-|++|.+||....+ .++. .+.++.|.-- ++.+.+.+.+.. .+.++++|-
T Consensus 84 -----~~~~aDiVvi~aG~~~kp-G~tR---~dL~~~N~~I----~~~i~~~i~~~~p~a~vlvvtN 137 (331)
T 4aj2_A 84 -----VTANSKLVIITAGARQQE-GESR---LNLVQRNVNI----FKFIIPNVVKYSPQCKLLIVSN 137 (331)
T ss_dssp -----GGTTEEEEEECCSCCCCT-TCCG---GGGHHHHHHH----HHHHHHHHHHHCTTCEEEECSS
T ss_pred -----HhCCCCEEEEccCCCCCC-CccH---HHHHHHHHHH----HHHHHHHHHHHCCCeEEEEecC
Confidence 123569999999976433 2333 3345556554 455555555544 355555553
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.043 Score=51.68 Aligned_cols=129 Identities=9% Similarity=-0.019 Sum_probs=70.9
Q ss_pred cccCcccCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCC-------EEEEEecChh--HHHHHHHHHHHhhcccCCCCeE
Q psy13409 3 LFSGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGA-------RVIMACRSLE--KAETAADDIRTSLKDVKDAGEV 73 (330)
Q Consensus 3 ~~~~~~~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~-------~Vil~~R~~~--~l~~~~~~l~~~~~~~~~~~~v 73 (330)
....+......++.-+|.|+||+|+||..++..|++... .+.+.+.++. .++-..-+++... .....
T Consensus 11 ~~~~~~~~~~s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~----~~~~~ 86 (345)
T 4h7p_A 11 TLEAQTQGPGSMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCA----FPLLD 86 (345)
T ss_dssp -----------CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTT----CTTEE
T ss_pred cccccccCCCCCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcC----ccCCC
Confidence 344555556667788999999999999999999987643 6888888753 3444444554321 12222
Q ss_pred EEEEccCCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCe-E
Q psy13409 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PAR-I 151 (330)
Q Consensus 74 ~~i~~Dls~~~si~~l~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~-I 151 (330)
..+..+ +. ... +..-|++|-.||....+ .++.++ .++.|..= ++.+.+.+.+.. +.. |
T Consensus 87 ~~~~~~--~~---~~a-------~~~advVvi~aG~prkp-GmtR~D---Ll~~Na~I----~~~~~~~i~~~a~~~~~v 146 (345)
T 4h7p_A 87 KVVVTA--DP---RVA-------FDGVAIAIMCGAFPRKA-GMERKD---LLEMNARI----FKEQGEAIAAVAASDCRV 146 (345)
T ss_dssp EEEEES--CH---HHH-------TTTCSEEEECCCCCCCT-TCCHHH---HHHHHHHH----HHHHHHHHHHHSCTTCEE
T ss_pred cEEEcC--Ch---HHH-------hCCCCEEEECCCCCCCC-CCCHHH---HHHHhHHH----HHHHHHHHHhhccCceEE
Confidence 222221 21 111 23569999999986543 334443 45555544 666666666543 344 4
Q ss_pred EEEc
Q psy13409 152 INLS 155 (330)
Q Consensus 152 V~iS 155 (330)
+.+|
T Consensus 147 lvvs 150 (345)
T 4h7p_A 147 VVVG 150 (345)
T ss_dssp EECS
T ss_pred EEeC
Confidence 4444
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.013 Score=55.39 Aligned_cols=80 Identities=25% Similarity=0.303 Sum_probs=53.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
.|+++||+|+ |++|...+..+...|+ +|+++++++++++.+ +++ +... ..|.++.+-.+.+ .+.
T Consensus 182 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a-~~l---------Ga~~---vi~~~~~~~~~~i-~~~ 246 (370)
T 4ej6_A 182 AGSTVAILGG-GVIGLLTVQLARLAGATTVILSTRQATKRRLA-EEV---------GATA---TVDPSAGDVVEAI-AGP 246 (370)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHHHHHHH-HHH---------TCSE---EECTTSSCHHHHH-HST
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHc---------CCCE---EECCCCcCHHHHH-Hhh
Confidence 6899999998 9999999988888999 899999998775533 332 2221 2355543322222 211
Q ss_pred H-hcCCCeeEEEEcCCC
Q psy13409 94 L-DNESAIHLLINNAGV 109 (330)
Q Consensus 94 ~-~~~g~iDvlInnAG~ 109 (330)
. ...+.+|++|.++|.
T Consensus 247 ~~~~~gg~Dvvid~~G~ 263 (370)
T 4ej6_A 247 VGLVPGGVDVVIECAGV 263 (370)
T ss_dssp TSSSTTCEEEEEECSCC
T ss_pred hhccCCCCCEEEECCCC
Confidence 1 123479999999984
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=96.31 E-value=0.01 Score=56.05 Aligned_cols=79 Identities=19% Similarity=0.274 Sum_probs=54.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCC-HHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSS-LKSVRKCAQE 92 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~-~~si~~l~~~ 92 (330)
.|+++||+|+ |+||...+..+...|+ +|+++++++++++.+. ++ +... + .|.++ .+++.+.+.+
T Consensus 191 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~-~l---------Ga~~-v--i~~~~~~~~~~~~~~~ 256 (374)
T 2jhf_A 191 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFAKAK-EV---------GATE-C--VNPQDYKKPIQEVLTE 256 (374)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HT---------TCSE-E--ECGGGCSSCHHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-Hh---------CCce-E--ecccccchhHHHHHHH
Confidence 6899999995 9999999998888999 8999999988765442 21 2221 1 34432 1234334444
Q ss_pred HHhcCCCeeEEEEcCCC
Q psy13409 93 ILDNESAIHLLINNAGV 109 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~ 109 (330)
+.. +.+|++|+++|.
T Consensus 257 ~~~--~g~D~vid~~g~ 271 (374)
T 2jhf_A 257 MSN--GGVDFSFEVIGR 271 (374)
T ss_dssp HTT--SCBSEEEECSCC
T ss_pred HhC--CCCcEEEECCCC
Confidence 322 479999999984
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0072 Score=52.11 Aligned_cols=42 Identities=31% Similarity=0.429 Sum_probs=37.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHH
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADD 59 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~ 59 (330)
+++|+||+|.+|.++++.|++.|++|++.+|+.++.++..+.
T Consensus 2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~ 43 (212)
T 1jay_A 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAE 43 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHH
T ss_pred eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 688999899999999999999999999999998877665544
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0024 Score=56.32 Aligned_cols=73 Identities=11% Similarity=0.097 Sum_probs=54.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
..++++|.|+ |.+|..+++.|.+.|+ |++++++++..++.. ..+.++.+|.++++.++++
T Consensus 8 ~~~~viI~G~-G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-------------~~~~~i~gd~~~~~~l~~a----- 67 (234)
T 2aef_A 8 KSRHVVICGW-SESTLECLRELRGSEV-FVLAEDENVRKKVLR-------------SGANFVHGDPTRVSDLEKA----- 67 (234)
T ss_dssp --CEEEEESC-CHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-------------TTCEEEESCTTCHHHHHHT-----
T ss_pred CCCEEEEECC-ChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-------------cCCeEEEcCCCCHHHHHhc-----
Confidence 3567899998 8999999999999999 999999987654432 1257789999998765443
Q ss_pred hcCCCeeEEEEcCC
Q psy13409 95 DNESAIHLLINNAG 108 (330)
Q Consensus 95 ~~~g~iDvlInnAG 108 (330)
.....|.+|.+.+
T Consensus 68 -~i~~ad~vi~~~~ 80 (234)
T 2aef_A 68 -NVRGARAVIVDLE 80 (234)
T ss_dssp -TCTTCSEEEECCS
T ss_pred -CcchhcEEEEcCC
Confidence 1235688887764
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0093 Score=60.19 Aligned_cols=63 Identities=16% Similarity=0.248 Sum_probs=50.1
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecCh-------------------hHHHHHHHHHHHhhcccCCCCe
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSL-------------------EKAETAADDIRTSLKDVKDAGE 72 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~-------------------~~l~~~~~~l~~~~~~~~~~~~ 72 (330)
++++.+|+|.|+ ||+|.++++.|+..|. ++.+++.+. .+.+.+.+.+++.. +..+
T Consensus 323 kL~~arVLIVGa-GGLGs~vA~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iN----P~V~ 397 (615)
T 4gsl_A 323 IIKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIF----PLMD 397 (615)
T ss_dssp HHHTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHC----TTCE
T ss_pred HHhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhC----CCcE
Confidence 578999999999 8999999999999998 799988753 46666666666653 5667
Q ss_pred EEEEEccC
Q psy13409 73 VVIRQLDL 80 (330)
Q Consensus 73 v~~i~~Dl 80 (330)
+..+..++
T Consensus 398 v~~~~~~I 405 (615)
T 4gsl_A 398 ATGVKLSI 405 (615)
T ss_dssp EEEECCCC
T ss_pred EEEeeccc
Confidence 77777655
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0045 Score=56.85 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=39.9
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAA 57 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~ 57 (330)
.++++|+++|.|+ ||.|++++..|.+.|+ +|+++.|+.++.+++.
T Consensus 118 ~~~~~k~vlvlGa-GGaaraia~~L~~~G~~~v~v~nRt~~ka~~La 163 (282)
T 3fbt_A 118 VEIKNNICVVLGS-GGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIY 163 (282)
T ss_dssp CCCTTSEEEEECS-STTHHHHHHHHHHTTCSEEEEEESCHHHHHHHC
T ss_pred CCccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence 4688999999998 7999999999999998 8999999998766553
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.011 Score=55.60 Aligned_cols=79 Identities=19% Similarity=0.245 Sum_probs=53.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCC-HHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSS-LKSVRKCAQE 92 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~-~~si~~l~~~ 92 (330)
.|.++||+|+ |+||...+..+...|+ +|+++++++++++.+. ++ +... + .|.++ .+++...+.+
T Consensus 190 ~g~~VlV~Ga-G~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~-~l---------Ga~~-v--i~~~~~~~~~~~~v~~ 255 (373)
T 2fzw_A 190 PGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKFARAK-EF---------GATE-C--INPQDFSKPIQEVLIE 255 (373)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH-HH---------TCSE-E--ECGGGCSSCHHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-Hc---------CCce-E--eccccccccHHHHHHH
Confidence 6899999996 9999999988888899 8999999988766543 22 2211 1 24432 1233333443
Q ss_pred HHhcCCCeeEEEEcCCC
Q psy13409 93 ILDNESAIHLLINNAGV 109 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~ 109 (330)
+.. +.+|++|+++|.
T Consensus 256 ~~~--~g~D~vid~~g~ 270 (373)
T 2fzw_A 256 MTD--GGVDYSFECIGN 270 (373)
T ss_dssp HTT--SCBSEEEECSCC
T ss_pred HhC--CCCCEEEECCCc
Confidence 322 479999999984
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.046 Score=51.09 Aligned_cols=117 Identities=16% Similarity=0.131 Sum_probs=68.2
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCC--EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGA--RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
..+++++.|+|+ |.+|.+++..|+..|. +|++++++.++++....++....... ..+.....| .+
T Consensus 6 ~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~---~~~~i~~~~---~~------ 72 (326)
T 3vku_A 6 DKDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFT---SPKKIYSAE---YS------ 72 (326)
T ss_dssp -CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGS---CCCEEEECC---GG------
T ss_pred cCCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhc---CCcEEEECc---HH------
Confidence 356789999997 9999999999999987 89999999988887777776543211 123322222 11
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEc
Q psy13409 91 QEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLS 155 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iS 155 (330)
....-|++|..||....+ .++ -.+.++.|.-- ++.+.+.+.+.. .+.++++|
T Consensus 73 -----a~~~aDiVvi~ag~~~kp-G~t---R~dL~~~N~~I----~~~i~~~i~~~~p~a~ilvvt 125 (326)
T 3vku_A 73 -----DAKDADLVVITAGAPQKP-GET---RLDLVNKNLKI----LKSIVDPIVDSGFNGIFLVAA 125 (326)
T ss_dssp -----GGTTCSEEEECCCCC--------------------C----HHHHHHHHHTTTCCSEEEECS
T ss_pred -----HhcCCCEEEECCCCCCCC-Cch---HHHHHHHHHHH----HHHHHHHHHhcCCceEEEEcc
Confidence 123569999999975432 122 23344455443 555566665554 35555554
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.013 Score=55.34 Aligned_cols=79 Identities=15% Similarity=0.190 Sum_probs=52.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
-.|+++||.||+|++|...+..+...|++|+++. ++++++. ++++ +... + .|..+.+ +.+.+.++
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~-~~~l---------Ga~~-v--i~~~~~~-~~~~v~~~ 227 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDL-AKSR---------GAEE-V--FDYRAPN-LAQTIRTY 227 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHH-HHHT---------TCSE-E--EETTSTT-HHHHHHHH
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHH-HHHc---------CCcE-E--EECCCch-HHHHHHHH
Confidence 4789999999999999999998889999998886 5655442 2222 2221 2 3444433 22222222
Q ss_pred HhcCCCeeEEEEcCCC
Q psy13409 94 LDNESAIHLLINNAGV 109 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~ 109 (330)
..+.+|++|.++|.
T Consensus 228 --t~g~~d~v~d~~g~ 241 (371)
T 3gqv_A 228 --TKNNLRYALDCITN 241 (371)
T ss_dssp --TTTCCCEEEESSCS
T ss_pred --ccCCccEEEECCCc
Confidence 22459999999984
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0079 Score=56.22 Aligned_cols=71 Identities=18% Similarity=0.257 Sum_probs=51.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
-.|.++||+|+ |+||...+..+...|++|+++++++++++.+. ++ +....+ ++.+.+.+
T Consensus 175 ~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~l---------Ga~~v~-----~~~~~~~~----- 233 (348)
T 3two_A 175 TKGTKVGVAGF-GGLGSMAVKYAVAMGAEVSVFARNEHKKQDAL-SM---------GVKHFY-----TDPKQCKE----- 233 (348)
T ss_dssp CTTCEEEEESC-SHHHHHHHHHHHHTTCEEEEECSSSTTHHHHH-HT---------TCSEEE-----SSGGGCCS-----
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-hc---------CCCeec-----CCHHHHhc-----
Confidence 36899999997 99999999888889999999999988766432 21 222222 33332211
Q ss_pred HhcCCCeeEEEEcCCCC
Q psy13409 94 LDNESAIHLLINNAGVM 110 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~ 110 (330)
.+|++|.++|..
T Consensus 234 -----~~D~vid~~g~~ 245 (348)
T 3two_A 234 -----ELDFIISTIPTH 245 (348)
T ss_dssp -----CEEEEEECCCSC
T ss_pred -----CCCEEEECCCcH
Confidence 689999999853
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.037 Score=51.51 Aligned_cols=77 Identities=16% Similarity=0.244 Sum_probs=52.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHC--CCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKR--GARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~--G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
.|+++||+|+ |+||...+..+... |++|+++++++++++.+. ++ +... + .|..+. +..+++
T Consensus 170 ~g~~VlV~Ga-G~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~-~l---------Ga~~-v--i~~~~~---~~~~~~ 232 (344)
T 2h6e_A 170 AEPVVIVNGI-GGLAVYTIQILKALMKNITIVGISRSKKHRDFAL-EL---------GADY-V--SEMKDA---ESLINK 232 (344)
T ss_dssp SSCEEEEECC-SHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHH-HH---------TCSE-E--ECHHHH---HHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHH-Hh---------CCCE-E--eccccc---hHHHHH
Confidence 7999999999 89999998888888 999999999988765443 22 2211 1 232220 122333
Q ss_pred HHhcCCCeeEEEEcCCC
Q psy13409 93 ILDNESAIHLLINNAGV 109 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~ 109 (330)
+.+ ...+|++|+++|.
T Consensus 233 ~~~-g~g~D~vid~~g~ 248 (344)
T 2h6e_A 233 LTD-GLGASIAIDLVGT 248 (344)
T ss_dssp HHT-TCCEEEEEESSCC
T ss_pred hhc-CCCccEEEECCCC
Confidence 333 2369999999984
|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0085 Score=60.37 Aligned_cols=63 Identities=16% Similarity=0.244 Sum_probs=49.7
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecC-------------------hhHHHHHHHHHHHhhcccCCCCe
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRS-------------------LEKAETAADDIRTSLKDVKDAGE 72 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~-------------------~~~l~~~~~~l~~~~~~~~~~~~ 72 (330)
+|++++|+|.|+ ||+|.++++.|+..|. ++.+++.+ ..+.+.+.+.+++.. +..+
T Consensus 324 kL~~~kVLIVGa-GGLGs~va~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~~L~~iN----P~v~ 398 (598)
T 3vh1_A 324 IIKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIF----PLMD 398 (598)
T ss_dssp HHHTCEEEEECC-SHHHHHHHHHHHTTTCCEEEEECCSBCCTTSTTTSTTCCSTTCSSBHHHHHHHHHHHHC----TTCE
T ss_pred HHhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccchhhcCcHHHHHHHHHHHhHC----CCcE
Confidence 578999999999 8999999999999998 79998653 256777777776653 4567
Q ss_pred EEEEEccC
Q psy13409 73 VVIRQLDL 80 (330)
Q Consensus 73 v~~i~~Dl 80 (330)
+..+..++
T Consensus 399 v~~~~~~I 406 (598)
T 3vh1_A 399 ATGVKLSI 406 (598)
T ss_dssp EEEECCCC
T ss_pred EEEEeccc
Confidence 77777665
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0087 Score=55.26 Aligned_cols=74 Identities=12% Similarity=0.256 Sum_probs=50.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
-.|.+++|+||+|++|...+..+...|++|+++.+. +++ +..+++ +... + .|..+.+.+.
T Consensus 151 ~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~-~~~-~~~~~l---------Ga~~-~--i~~~~~~~~~------ 210 (321)
T 3tqh_A 151 KQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASK-RNH-AFLKAL---------GAEQ-C--INYHEEDFLL------ 210 (321)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECH-HHH-HHHHHH---------TCSE-E--EETTTSCHHH------
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEecc-chH-HHHHHc---------CCCE-E--EeCCCcchhh------
Confidence 368999999999999999999999999999988754 332 223332 2221 2 3444433121
Q ss_pred HhcCCCeeEEEEcCC
Q psy13409 94 LDNESAIHLLINNAG 108 (330)
Q Consensus 94 ~~~~g~iDvlInnAG 108 (330)
+....+|++|.++|
T Consensus 211 -~~~~g~D~v~d~~g 224 (321)
T 3tqh_A 211 -AISTPVDAVIDLVG 224 (321)
T ss_dssp -HCCSCEEEEEESSC
T ss_pred -hhccCCCEEEECCC
Confidence 22257999999998
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.017 Score=54.45 Aligned_cols=79 Identities=23% Similarity=0.226 Sum_probs=53.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCC-HHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSS-LKSVRKCAQE 92 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~-~~si~~l~~~ 92 (330)
.|.++||+|+ |+||...+..+...|+ +|+++++++++++.+. ++ +... + .|.++ .+++.+.+.+
T Consensus 195 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~l---------Ga~~-v--i~~~~~~~~~~~~v~~ 260 (376)
T 1e3i_A 195 PGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK-AL---------GATD-C--LNPRELDKPVQDVITE 260 (376)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HT---------TCSE-E--ECGGGCSSCHHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-Hh---------CCcE-E--EccccccchHHHHHHH
Confidence 6899999996 9999999988888899 8999999988765442 21 2221 1 24432 1223333343
Q ss_pred HHhcCCCeeEEEEcCCC
Q psy13409 93 ILDNESAIHLLINNAGV 109 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~ 109 (330)
+.. +.+|++|.++|.
T Consensus 261 ~~~--~g~Dvvid~~G~ 275 (376)
T 1e3i_A 261 LTA--GGVDYSLDCAGT 275 (376)
T ss_dssp HHT--SCBSEEEESSCC
T ss_pred HhC--CCccEEEECCCC
Confidence 333 479999999984
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.026 Score=53.89 Aligned_cols=80 Identities=20% Similarity=0.315 Sum_probs=53.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
-.|.++||+|+ |++|...+..+...|+ +|+++++++++++.+ +++ +... ..|..+.+-.+.+ .+
T Consensus 212 ~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~-~~l---------Ga~~---vi~~~~~~~~~~i-~~ 276 (404)
T 3ip1_A 212 RPGDNVVILGG-GPIGLAAVAILKHAGASKVILSEPSEVRRNLA-KEL---------GADH---VIDPTKENFVEAV-LD 276 (404)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHHHHHHH-HHH---------TCSE---EECTTTSCHHHHH-HH
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHc---------CCCE---EEcCCCCCHHHHH-HH
Confidence 36899999998 9999999888888999 899999998876543 222 2221 1344443322222 22
Q ss_pred HHhcCCCeeEEEEcCCC
Q psy13409 93 ILDNESAIHLLINNAGV 109 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~ 109 (330)
+.. ...+|++|.++|.
T Consensus 277 ~t~-g~g~D~vid~~g~ 292 (404)
T 3ip1_A 277 YTN-GLGAKLFLEATGV 292 (404)
T ss_dssp HTT-TCCCSEEEECSSC
T ss_pred HhC-CCCCCEEEECCCC
Confidence 211 1259999999984
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=96.05 E-value=0.018 Score=54.44 Aligned_cols=84 Identities=17% Similarity=0.268 Sum_probs=63.0
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecCh-------------------hHHHHHHHHHHHhhcccCCCC
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSL-------------------EKAETAADDIRTSLKDVKDAG 71 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~-------------------~~l~~~~~~l~~~~~~~~~~~ 71 (330)
.+|++++|+|.|+ ||+|.++++.|+..|. ++.+++++. .+.+.+.+.+.+.. +..
T Consensus 114 ~~L~~~~VlvvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n----p~v 188 (353)
T 3h5n_A 114 DKLKNAKVVILGC-GGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRN----SEI 188 (353)
T ss_dssp HHHHTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHC----TTS
T ss_pred HHHhCCeEEEECC-CHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHC----CCC
Confidence 3578999999998 8999999999999997 799998752 35555555665543 567
Q ss_pred eEEEEEccCCCHHHHHHHHHHHHhcCCCeeEEEEcCC
Q psy13409 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAG 108 (330)
Q Consensus 72 ~v~~i~~Dls~~~si~~l~~~i~~~~g~iDvlInnAG 108 (330)
++..+..+++...++. + +...|++|.+..
T Consensus 189 ~v~~~~~~i~~~~~~~-------~-~~~~DlVvd~~D 217 (353)
T 3h5n_A 189 SVSEIALNINDYTDLH-------K-VPEADIWVVSAD 217 (353)
T ss_dssp EEEEEECCCCSGGGGG-------G-SCCCSEEEECCC
T ss_pred eEEEeecccCchhhhh-------H-hccCCEEEEecC
Confidence 8888888887754322 2 456899998764
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.011 Score=55.59 Aligned_cols=76 Identities=18% Similarity=0.211 Sum_probs=52.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.|.+++|+|+ |+||...+..+...|++|+++++++++++...+++ +... + .|..+.+.+ .
T Consensus 180 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~l---------Ga~~-v--i~~~~~~~~-------~ 239 (357)
T 2cf5_A 180 PGLRGGILGL-GGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDL---------GADD-Y--VIGSDQAKM-------S 239 (357)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTS---------CCSC-E--EETTCHHHH-------H
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHc---------CCce-e--eccccHHHH-------H
Confidence 7899999996 99999999888888999999999987765443121 2221 1 244443322 2
Q ss_pred hcCCCeeEEEEcCCCC
Q psy13409 95 DNESAIHLLINNAGVM 110 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~ 110 (330)
+..+.+|++|.++|..
T Consensus 240 ~~~~g~D~vid~~g~~ 255 (357)
T 2cf5_A 240 ELADSLDYVIDTVPVH 255 (357)
T ss_dssp HSTTTEEEEEECCCSC
T ss_pred HhcCCCCEEEECCCCh
Confidence 2234799999999853
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.1 Score=48.56 Aligned_cols=80 Identities=18% Similarity=0.125 Sum_probs=54.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.+++.|+|| |.+|..++..|+..|. +|++.+++.+.++.....+...........++... .|. +.
T Consensus 14 ~~kI~ViGa-G~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t-~d~---~a--------- 79 (328)
T 2hjr_A 14 RKKISIIGA-GQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGE-NNY---EY--------- 79 (328)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEE-SCG---GG---------
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEEC-CCH---HH---------
Confidence 368999998 9999999999999998 99999999888776544443322111123344432 232 11
Q ss_pred hcCCCeeEEEEcCCCCC
Q psy13409 95 DNESAIHLLINNAGVMM 111 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~ 111 (330)
...-|++|..+|...
T Consensus 80 --l~~aD~VI~avg~p~ 94 (328)
T 2hjr_A 80 --LQNSDVVIITAGVPR 94 (328)
T ss_dssp --GTTCSEEEECCSCCC
T ss_pred --HCCCCEEEEcCCCCC
Confidence 124699999998754
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.058 Score=49.80 Aligned_cols=116 Identities=14% Similarity=0.095 Sum_probs=67.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
+++.|+|+ |.+|..++..|+..|. +|++.+++.++++....++...........++... .|. +.
T Consensus 3 ~kI~VIGa-G~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t-~d~---~a---------- 67 (309)
T 1ur5_A 3 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGT-NNY---AD---------- 67 (309)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEE-SCG---GG----------
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEEC-CCH---HH----------
Confidence 57999999 9999999999999996 89999999887776555554321111122334321 222 11
Q ss_pred cCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcC
Q psy13409 96 NESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSS 156 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS 156 (330)
+..-|++|..+|....+. .+.. +.+..|.- +.+.+.+.+.+.....+|.+.|
T Consensus 68 -~~~aD~Vi~a~g~p~~~g-~~r~---dl~~~n~~----i~~~i~~~i~~~~p~a~vi~~t 119 (309)
T 1ur5_A 68 -TANSDVIVVTSGAPRKPG-MSRE---DLIKVNAD----ITRACISQAAPLSPNAVIIMVN 119 (309)
T ss_dssp -GTTCSEEEECCCC---------C---HHHHHHHH----HHHHHHHHHGGGCTTCEEEECC
T ss_pred -HCCCCEEEEcCCCCCCCC-CCHH---HHHHHHHH----HHHHHHHHHHhhCCCeEEEEcC
Confidence 124699999999754321 1111 22333333 3566666666655455555544
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0097 Score=56.32 Aligned_cols=79 Identities=19% Similarity=0.242 Sum_probs=54.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCC-HHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSS-LKSVRKCAQE 92 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~-~~si~~l~~~ 92 (330)
.|.++||+|+ |+||...+..+...|+ +|+++++++++++.+ +++ +... + .|..+ .+++.+.+.+
T Consensus 193 ~g~~VlV~Ga-G~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a-~~l---------Ga~~-v--i~~~~~~~~~~~~i~~ 258 (378)
T 3uko_A 193 PGSNVAIFGL-GTVGLAVAEGAKTAGASRIIGIDIDSKKYETA-KKF---------GVNE-F--VNPKDHDKPIQEVIVD 258 (378)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHHTCSCEEEECSCTTHHHHH-HTT---------TCCE-E--ECGGGCSSCHHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHc---------CCcE-E--EccccCchhHHHHHHH
Confidence 6899999998 9999999888888899 799999998876633 221 2222 2 24332 2233334443
Q ss_pred HHhcCCCeeEEEEcCCC
Q psy13409 93 ILDNESAIHLLINNAGV 109 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~ 109 (330)
+.. +.+|++|.++|.
T Consensus 259 ~~~--gg~D~vid~~g~ 273 (378)
T 3uko_A 259 LTD--GGVDYSFECIGN 273 (378)
T ss_dssp HTT--SCBSEEEECSCC
T ss_pred hcC--CCCCEEEECCCC
Confidence 322 379999999984
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0089 Score=58.58 Aligned_cols=75 Identities=11% Similarity=0.193 Sum_probs=58.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
.++++|.|+ |.+|+.+|+.|.++|+.|++++++++.++++.+.+ .+.++.+|.++++.++++
T Consensus 3 ~M~iiI~G~-G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~-----------~~~~i~Gd~~~~~~L~~A------ 64 (461)
T 4g65_A 3 AMKIIILGA-GQVGGTLAENLVGENNDITIVDKDGDRLRELQDKY-----------DLRVVNGHASHPDVLHEA------ 64 (461)
T ss_dssp CEEEEEECC-SHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHS-----------SCEEEESCTTCHHHHHHH------
T ss_pred cCEEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc-----------CcEEEEEcCCCHHHHHhc------
Confidence 467999999 89999999999999999999999998876654332 356789999998876554
Q ss_pred cCCCeeEEEEcCC
Q psy13409 96 NESAIHLLINNAG 108 (330)
Q Consensus 96 ~~g~iDvlInnAG 108 (330)
....-|++|...+
T Consensus 65 gi~~ad~~ia~t~ 77 (461)
T 4g65_A 65 GAQDADMLVAVTN 77 (461)
T ss_dssp TTTTCSEEEECCS
T ss_pred CCCcCCEEEEEcC
Confidence 1234688887665
|
| >3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.016 Score=55.01 Aligned_cols=80 Identities=16% Similarity=0.258 Sum_probs=53.7
Q ss_pred CCCEEEEEc-CCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 15 DGKTAIVTG-SNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 15 ~gk~aLITG-as~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
.|.++||.| |+|++|...+..+...|++|+++++++++++.+.+ + +... + .|..+.+-.+.+. ++
T Consensus 170 ~g~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~~~~~~~~~~~~~-l---------Ga~~-~--~~~~~~~~~~~v~-~~ 235 (379)
T 3iup_A 170 EGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQADLLKA-Q---------GAVH-V--CNAASPTFMQDLT-EA 235 (379)
T ss_dssp TTCSCEEESSTTSHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHH-T---------TCSC-E--EETTSTTHHHHHH-HH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHh-C---------CCcE-E--EeCCChHHHHHHH-HH
Confidence 688999997 89999999998888889999999999887654432 1 2221 1 2444433222222 22
Q ss_pred HhcCCCeeEEEEcCCC
Q psy13409 94 LDNESAIHLLINNAGV 109 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~ 109 (330)
... ..+|++|.++|.
T Consensus 236 t~~-~g~d~v~d~~g~ 250 (379)
T 3iup_A 236 LVS-TGATIAFDATGG 250 (379)
T ss_dssp HHH-HCCCEEEESCEE
T ss_pred hcC-CCceEEEECCCc
Confidence 111 258999999985
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.018 Score=54.29 Aligned_cols=79 Identities=22% Similarity=0.251 Sum_probs=53.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCC-HHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSS-LKSVRKCAQE 92 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~-~~si~~l~~~ 92 (330)
.|+++||+|+ |+||...+..+...|+ +|+++++++++++.+. ++ +... + .|..+ .+++.+.+.+
T Consensus 191 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~l---------Ga~~-v--i~~~~~~~~~~~~i~~ 256 (373)
T 1p0f_A 191 PGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI-EL---------GATE-C--LNPKDYDKPIYEVICE 256 (373)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH-HT---------TCSE-E--ECGGGCSSCHHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH-Hc---------CCcE-E--EecccccchHHHHHHH
Confidence 6899999996 9999999888878899 8999999988765432 21 2221 2 23332 1223333333
Q ss_pred HHhcCCCeeEEEEcCCC
Q psy13409 93 ILDNESAIHLLINNAGV 109 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~ 109 (330)
+.. +.+|++|.++|.
T Consensus 257 ~t~--gg~Dvvid~~g~ 271 (373)
T 1p0f_A 257 KTN--GGVDYAVECAGR 271 (373)
T ss_dssp HTT--SCBSEEEECSCC
T ss_pred HhC--CCCCEEEECCCC
Confidence 322 479999999984
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.015 Score=54.50 Aligned_cols=76 Identities=16% Similarity=0.229 Sum_probs=51.1
Q ss_pred CCCCEEEEEcCCCchHHHH-HHHH-HHCCCE-EEEEecChh---HHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCT-ANEL-AKRGAR-VIMACRSLE---KAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVR 87 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~ai-a~~L-~~~G~~-Vil~~R~~~---~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~ 87 (330)
++++++||+|+ |+||... +..+ ...|++ |++++++++ +++.+. ++ +.. .+ |..+.+ +.
T Consensus 171 ~~~~~VlV~Ga-G~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~-~l---------Ga~--~v--~~~~~~-~~ 234 (357)
T 2b5w_A 171 WDPSSAFVLGN-GSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIE-EL---------DAT--YV--DSRQTP-VE 234 (357)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHH-HT---------TCE--EE--ETTTSC-GG
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHH-Hc---------CCc--cc--CCCccC-HH
Confidence 34599999999 9999998 6665 567997 999999887 655432 21 222 22 554432 33
Q ss_pred HHHHHHHhcCCCeeEEEEcCCC
Q psy13409 88 KCAQEILDNESAIHLLINNAGV 109 (330)
Q Consensus 88 ~l~~~i~~~~g~iDvlInnAG~ 109 (330)
+ +.++ .+.+|++|.++|.
T Consensus 235 ~-i~~~---~gg~Dvvid~~g~ 252 (357)
T 2b5w_A 235 D-VPDV---YEQMDFIYEATGF 252 (357)
T ss_dssp G-HHHH---SCCEEEEEECSCC
T ss_pred H-HHHh---CCCCCEEEECCCC
Confidence 3 3444 2379999999983
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.86 E-value=0.038 Score=52.53 Aligned_cols=80 Identities=24% Similarity=0.268 Sum_probs=53.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
.|+++||.|+ |+||...+..+...|+ .|+++++++++++.+. + .+.. . .|.++.+.+.+.+.++
T Consensus 185 ~g~~VlV~Ga-G~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~-~---------lGa~--~--i~~~~~~~~~~~v~~~ 249 (398)
T 1kol_A 185 PGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARLAHAK-A---------QGFE--I--ADLSLDTPLHEQIAAL 249 (398)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-H---------TTCE--E--EETTSSSCHHHHHHHH
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHH-H---------cCCc--E--EccCCcchHHHHHHHH
Confidence 6899999995 9999998888778899 7999999988765442 2 1332 2 3444433232222322
Q ss_pred HhcCCCeeEEEEcCCCC
Q psy13409 94 LDNESAIHLLINNAGVM 110 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~ 110 (330)
.. ...+|++|.++|..
T Consensus 250 t~-g~g~Dvvid~~G~~ 265 (398)
T 1kol_A 250 LG-EPEVDCAVDAVGFE 265 (398)
T ss_dssp HS-SSCEEEEEECCCTT
T ss_pred hC-CCCCCEEEECCCCc
Confidence 21 13699999999864
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.068 Score=49.64 Aligned_cols=116 Identities=17% Similarity=0.134 Sum_probs=68.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCC--EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGA--RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
+++.|+|+ |.+|..++..|+..|. .|++.++++++++....+++..........++... | +.+
T Consensus 1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~--~--~~~---------- 65 (314)
T 3nep_X 1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGT--N--DYG---------- 65 (314)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEE--S--SSG----------
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEEC--C--CHH----------
Confidence 36889997 9999999999999987 89999999987776555555422111112233321 1 111
Q ss_pred hcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcC
Q psy13409 95 DNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSS 156 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS 156 (330)
.+..-|++|.++|....+ .++ -.+.+..|..- ++.+.+.+.+.. .+.++++|-
T Consensus 66 -a~~~aDvVii~ag~~~kp-G~~---R~dl~~~N~~i----~~~i~~~i~~~~p~a~vivvtN 119 (314)
T 3nep_X 66 -PTEDSDVCIITAGLPRSP-GMS---RDDLLAKNTEI----VGGVTEQFVEGSPDSTIIVVAN 119 (314)
T ss_dssp -GGTTCSEEEECCCC-----------CHHHHHHHHHH----HHHHHHHHHTTCTTCEEEECCS
T ss_pred -HhCCCCEEEECCCCCCCC-CCC---HHHHHHhhHHH----HHHHHHHHHHhCCCcEEEecCC
Confidence 123469999999976432 222 23344555544 566666666554 355555553
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.012 Score=53.54 Aligned_cols=41 Identities=29% Similarity=0.325 Sum_probs=38.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHH
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAA 57 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~ 57 (330)
+|+++|.|+ ||.|++++..|++.|.+|+++.|+.++.+++.
T Consensus 118 ~k~vlvlGa-GGaaraia~~L~~~G~~v~V~nRt~~ka~~la 158 (269)
T 3phh_A 118 YQNALILGA-GGSAKALACELKKQGLQVSVLNRSSRGLDFFQ 158 (269)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 899999997 99999999999999999999999998877766
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.1 Score=48.45 Aligned_cols=79 Identities=15% Similarity=0.088 Sum_probs=54.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
+++.|+|+ |.+|..++..|+..|. .|++.++++++++.....+...........++... .|. +.
T Consensus 5 ~kI~VIGa-G~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t-~d~---~a---------- 69 (322)
T 1t2d_A 5 AKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGS-NTY---DD---------- 69 (322)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEE-CCG---GG----------
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEEC-CCH---HH----------
Confidence 57999998 9999999999999998 99999999888876666555432211123334321 222 11
Q ss_pred cCCCeeEEEEcCCCCC
Q psy13409 96 NESAIHLLINNAGVMM 111 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~ 111 (330)
...-|++|..+|...
T Consensus 70 -l~~aD~Vi~a~g~p~ 84 (322)
T 1t2d_A 70 -LAGADVVIVTAGFTK 84 (322)
T ss_dssp -GTTCSEEEECCSCSS
T ss_pred -hCCCCEEEEeCCCCC
Confidence 134699999999754
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.21 Score=46.21 Aligned_cols=116 Identities=15% Similarity=0.139 Sum_probs=69.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCC--EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGA--RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
.+++.|+|+ |.+|..++..|+..|. +|++.+++.++++.....+...........++. . | +.+
T Consensus 6 ~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~--~-~--~~~--------- 70 (316)
T 1ldn_A 6 GARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIW--H-G--DYD--------- 70 (316)
T ss_dssp SCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEE--E-C--CGG---------
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEE--c-C--cHH---------
Confidence 468999999 9999999999998885 899999998766655555554322111122332 2 2 211
Q ss_pred HhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcC
Q psy13409 94 LDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSS 156 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS 156 (330)
.+..-|++|.++|....+.. +.. +.+..|. -+.+.+.+.+.+.....++++.|
T Consensus 71 --al~~aDvViia~~~~~~~g~-~r~---dl~~~n~----~i~~~i~~~i~~~~p~a~~iv~t 123 (316)
T 1ldn_A 71 --DCRDADLVVICAGANQKPGE-TRL---DLVDKNI----AIFRSIVESVMASGFQGLFLVAT 123 (316)
T ss_dssp --GTTTCSEEEECCSCCCCTTT-CSG---GGHHHHH----HHHHHHHHHHHHHTCCSEEEECS
T ss_pred --HhCCCCEEEEcCCCCCCCCC-CHH---HHHHcCh----HHHHHHHHHHHHHCCCCEEEEeC
Confidence 12356999999998654422 222 2334443 34555566555544333444433
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.023 Score=52.25 Aligned_cols=40 Identities=25% Similarity=0.349 Sum_probs=35.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHH
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETA 56 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~ 56 (330)
|+ +||+||+|++|...+..+...|++|+++++++++++.+
T Consensus 148 g~-VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~ 187 (324)
T 3nx4_A 148 GE-VVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYL 187 (324)
T ss_dssp CC-EEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH
T ss_pred Ce-EEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 46 99999999999999998889999999999998876654
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.75 E-value=0.043 Score=51.63 Aligned_cols=78 Identities=14% Similarity=0.234 Sum_probs=51.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
.|+++||+|+ |+||...+..+...|+ .|+++++++++++.+. ++ +... + .|..+.+-.+. +.+.
T Consensus 190 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~-~l---------Ga~~-v--i~~~~~~~~~~-~~~~ 254 (371)
T 1f8f_A 190 PASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRLELAK-QL---------GATH-V--INSKTQDPVAA-IKEI 254 (371)
T ss_dssp TTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH-HH---------TCSE-E--EETTTSCHHHH-HHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH-Hc---------CCCE-E--ecCCccCHHHH-HHHh
Confidence 6899999995 9999999888777899 6999999988765442 22 2221 2 24433222222 2222
Q ss_pred HhcCCCeeEEEEcCCC
Q psy13409 94 LDNESAIHLLINNAGV 109 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~ 109 (330)
..+.+|++|+++|.
T Consensus 255 --~~gg~D~vid~~g~ 268 (371)
T 1f8f_A 255 --TDGGVNFALESTGS 268 (371)
T ss_dssp --TTSCEEEEEECSCC
T ss_pred --cCCCCcEEEECCCC
Confidence 12379999999983
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=95.72 E-value=0.61 Score=43.52 Aligned_cols=117 Identities=15% Similarity=0.077 Sum_probs=75.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCC--EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGA--RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
..+++.|+|+ |.+|..++..|+..|. .|++.+++.++++....++...... ....++.. ..|..+
T Consensus 20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~-~~~~~i~~-t~d~~~---------- 86 (330)
T 3ldh_A 20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLF-LHTAKIVS-GKDYSV---------- 86 (330)
T ss_dssp CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGG-SCCSEEEE-ESSSCS----------
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhc-ccCCeEEE-cCCHHH----------
Confidence 5688999999 9999999999999997 8999999998887777666553211 12233322 234422
Q ss_pred HHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcC
Q psy13409 93 ILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSS 156 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS 156 (330)
+..-|++|..||....+ .++.. +.+..|..- .+.+.+.+.+.. .+.++++|-
T Consensus 87 ----~~daDiVIitaG~p~kp-G~tR~---dll~~N~~I----~k~i~~~I~k~~P~a~ilvvtN 139 (330)
T 3ldh_A 87 ----SAGSKLVVITAGARQQE-GESRL---NLVQRNVNI----FKFIIPNIVKHSPDCLKELHPE 139 (330)
T ss_dssp ----CSSCSEEEECCSCCCCS-SCCTT---GGGHHHHHH----HHHHHHHHHHHCTTCEEEECSS
T ss_pred ----hCCCCEEEEeCCCCCCC-CCCHH---HHHHhhHHH----HHHHHHHHHhhCCCceEEeCCC
Confidence 23569999999986543 22322 334444443 555555555554 355555553
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.039 Score=52.49 Aligned_cols=80 Identities=20% Similarity=0.325 Sum_probs=53.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
.|.++||.|+ |+||...+..+...|+ +|+++++++++++.+. + .+. .. .|..+.+-+...+.++
T Consensus 185 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~----~------lGa--~~--i~~~~~~~~~~~~~~~ 249 (398)
T 2dph_A 185 PGSHVYIAGA-GPVGRCAAAGARLLGAACVIVGDQNPERLKLLS----D------AGF--ET--IDLRNSAPLRDQIDQI 249 (398)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH----T------TTC--EE--EETTSSSCHHHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH----H------cCC--cE--EcCCCcchHHHHHHHH
Confidence 6899999997 9999998887777899 8999999988765432 1 133 22 3554433212222222
Q ss_pred HhcCCCeeEEEEcCCCC
Q psy13409 94 LDNESAIHLLINNAGVM 110 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~ 110 (330)
.. ...+|++|.++|..
T Consensus 250 ~~-g~g~Dvvid~~g~~ 265 (398)
T 2dph_A 250 LG-KPEVDCGVDAVGFE 265 (398)
T ss_dssp HS-SSCEEEEEECSCTT
T ss_pred hC-CCCCCEEEECCCCc
Confidence 22 12599999999854
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=95.69 E-value=0.02 Score=54.32 Aligned_cols=72 Identities=19% Similarity=0.120 Sum_probs=53.0
Q ss_pred CcccCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHH
Q psy13409 6 GKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKS 85 (330)
Q Consensus 6 ~~~~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~s 85 (330)
..++.++.+.+|+++|.|+ |.+|+.+++.+.+.|++|++++.++..... . ..+ ..+..|..|.+.
T Consensus 2 ~~~~~~~~~~~~~IlIlG~-G~lg~~la~aa~~lG~~viv~d~~~~~p~~---~---------~ad--~~~~~~~~d~~~ 66 (377)
T 3orq_A 2 NAMNFNKLKFGATIGIIGG-GQLGKMMAQSAQKMGYKVVVLDPSEDCPCR---Y---------VAH--EFIQAKYDDEKA 66 (377)
T ss_dssp CCSSCCCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCTTCTTG---G---------GSS--EEEECCTTCHHH
T ss_pred CccccccCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCCChhh---h---------hCC--EEEECCCCCHHH
Confidence 3444555678999999998 789999999999999999999887542100 0 011 356689999888
Q ss_pred HHHHHHH
Q psy13409 86 VRKCAQE 92 (330)
Q Consensus 86 i~~l~~~ 92 (330)
+.++++.
T Consensus 67 l~~~~~~ 73 (377)
T 3orq_A 67 LNQLGQK 73 (377)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8777654
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.025 Score=50.90 Aligned_cols=42 Identities=19% Similarity=0.406 Sum_probs=36.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETA 56 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~ 56 (330)
.++| +++|.|+ ||.|++++..|++.|+ +|++++|+.++.+++
T Consensus 106 ~~~~-~vliiGa-Gg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~l 148 (253)
T 3u62_A 106 EVKE-PVVVVGA-GGAARAVIYALLQMGVKDIWVVNRTIERAKAL 148 (253)
T ss_dssp CCCS-SEEEECC-SHHHHHHHHHHHHTTCCCEEEEESCHHHHHTC
T ss_pred CCCC-eEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence 4678 9999998 9999999999999998 899999998765543
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=95.67 E-value=0.14 Score=47.30 Aligned_cols=82 Identities=22% Similarity=0.152 Sum_probs=53.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.+++.|.|+ |.+|..++..|++.|. +|++.+++.+.++.....+...........++... .|. +.
T Consensus 4 ~~kI~VIGa-G~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t-~d~---~a--------- 69 (317)
T 2ewd_A 4 RRKIAVIGS-GQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGT-DDY---AD--------- 69 (317)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEE-SCG---GG---------
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEEC-CCH---HH---------
Confidence 468999998 9999999999999998 99999999877766433332211100112333321 221 11
Q ss_pred hcCCCeeEEEEcCCCCCCC
Q psy13409 95 DNESAIHLLINNAGVMMCP 113 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~ 113 (330)
....|++|.++|....+
T Consensus 70 --~~~aDiVi~avg~p~~~ 86 (317)
T 2ewd_A 70 --ISGSDVVIITASIPGRP 86 (317)
T ss_dssp --GTTCSEEEECCCCSSCC
T ss_pred --hCCCCEEEEeCCCCCCC
Confidence 12469999999976543
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=95.63 E-value=0.022 Score=54.09 Aligned_cols=46 Identities=20% Similarity=0.346 Sum_probs=41.0
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADD 59 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~ 59 (330)
+|+||+++|.|. |.+|..+++.|.+.|++|++.+++.+++++..++
T Consensus 170 ~L~GktV~V~G~-G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~ 215 (364)
T 1leh_A 170 SLEGLAVSVQGL-GNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAE 215 (364)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH
T ss_pred CCCcCEEEEECc-hHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence 699999999998 8899999999999999999999998877665554
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.024 Score=54.69 Aligned_cols=74 Identities=18% Similarity=0.240 Sum_probs=54.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
+..++|.|. |-+|..+++.|.+.|+.|++++++++..+...+ ..+.++.+|.++++.++++
T Consensus 4 ~~~viIiG~-Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~------------~g~~vi~GDat~~~~L~~a------ 64 (413)
T 3l9w_A 4 GMRVIIAGF-GRFGQITGRLLLSSGVKMVVLDHDPDHIETLRK------------FGMKVFYGDATRMDLLESA------ 64 (413)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH------------TTCCCEESCTTCHHHHHHT------
T ss_pred CCeEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh------------CCCeEEEcCCCCHHHHHhc------
Confidence 456899998 889999999999999999999999987665432 1244677888887755443
Q ss_pred cCCCeeEEEEcCC
Q psy13409 96 NESAIHLLINNAG 108 (330)
Q Consensus 96 ~~g~iDvlInnAG 108 (330)
.....|++|.+.+
T Consensus 65 gi~~A~~viv~~~ 77 (413)
T 3l9w_A 65 GAAKAEVLINAID 77 (413)
T ss_dssp TTTTCSEEEECCS
T ss_pred CCCccCEEEECCC
Confidence 1234577776664
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.023 Score=54.59 Aligned_cols=43 Identities=19% Similarity=0.121 Sum_probs=38.7
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETA 56 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~ 56 (330)
.+.+++++|+|+ |.||+.+++.+...|++|++++++..+++..
T Consensus 169 ~l~g~~V~ViGa-G~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~ 211 (401)
T 1x13_A 169 KVPPAKVMVIGA-GVAGLAAIGAANSLGAIVRAFDTRPEVKEQV 211 (401)
T ss_dssp EECCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCGGGHHHH
T ss_pred CcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 478999999997 8999999999999999999999998876654
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=95.45 E-value=0.035 Score=51.80 Aligned_cols=79 Identities=15% Similarity=0.172 Sum_probs=51.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
.|.++||+|+ |+||...+..+...|+ +|+++++++++++.+ +++ +... + .|..+.+-.+.+ .+.
T Consensus 166 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~-~~l---------Ga~~-v--i~~~~~~~~~~v-~~~ 230 (352)
T 3fpc_A 166 LGDTVCVIGI-GPVGLMSVAGANHLGAGRIFAVGSRKHCCDIA-LEY---------GATD-I--INYKNGDIVEQI-LKA 230 (352)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHTTTCSSEEEECCCHHHHHHH-HHH---------TCCE-E--ECGGGSCHHHHH-HHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH-HHh---------CCce-E--EcCCCcCHHHHH-HHH
Confidence 6899999986 9999998888888899 799999998776543 222 2221 2 243333222222 222
Q ss_pred HhcCCCeeEEEEcCCC
Q psy13409 94 LDNESAIHLLINNAGV 109 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~ 109 (330)
. ....+|++|.++|.
T Consensus 231 t-~g~g~D~v~d~~g~ 245 (352)
T 3fpc_A 231 T-DGKGVDKVVIAGGD 245 (352)
T ss_dssp T-TTCCEEEEEECSSC
T ss_pred c-CCCCCCEEEECCCC
Confidence 1 11259999999985
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.31 Score=44.77 Aligned_cols=116 Identities=15% Similarity=0.097 Sum_probs=73.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCC--EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGA--RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
+++.|+|+ |+||..++..|+.++. ++++++.+.+.++-.+.++...........++.. ..|. ++
T Consensus 1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~-~~d~---~~--------- 66 (294)
T 2x0j_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG-GADY---SL--------- 66 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEE-ESCG---GG---------
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEec-CCCH---HH---------
Confidence 36788896 9999999999998875 7999999987777666666553322222233322 2232 21
Q ss_pred hcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcC
Q psy13409 95 DNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSS 156 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS 156 (330)
...-|++|..||....+ .++.+ +.++.|.. +++.+.+.+.+.....+|.+-|
T Consensus 67 --~~~aDvVvitAG~prkp-GmtR~---dLl~~Na~----I~~~i~~~i~~~~p~aivlvvs 118 (294)
T 2x0j_A 67 --LKGSEIIVVTAGLARKP-GMTRL---DLAHKNAG----IIKDIAKKIVENAPESKILVVT 118 (294)
T ss_dssp --GTTCSEEEECCCCCCCS-SSCHH---HHHHHHHH----HHHHHHHHHHTTSTTCEEEECS
T ss_pred --hCCCCEEEEecCCCCCC-CCchH---HHHHHHHH----HHHHHHHHHHhcCCceEEEEec
Confidence 12459999999977543 33433 34555554 4677777777666544555444
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.25 Score=45.92 Aligned_cols=116 Identities=16% Similarity=0.143 Sum_probs=71.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCC--EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGA--RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
-+.+++.|+|+ |.+|..++..|+..+. .|++.+++.++++....++..... .. ..+.+.. | +.++
T Consensus 7 ~~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~-~~--~~~~i~~-~--~~~a------ 73 (326)
T 2zqz_A 7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALP-FT--SPKKIYS-A--EYSD------ 73 (326)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGG-GS--CCCEEEE-C--CGGG------
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHH-hc--CCeEEEE-C--CHHH------
Confidence 34578999999 9999999999998886 899999999888776766655321 11 2222222 2 2221
Q ss_pred HHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEc
Q psy13409 92 EILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLS 155 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iS 155 (330)
+..-|++|..+|....+ ..+. .+.+..|.-- ++.+.+.+.+.. .+.||++|
T Consensus 74 -----~~~aDvVii~ag~~~k~-g~~R---~dl~~~n~~i----~~~i~~~i~~~~p~a~iiv~t 125 (326)
T 2zqz_A 74 -----AKDADLVVITAGAPQKP-GETR---LDLVNKNLKI----LKSIVDPIVDSGFNGIFLVAA 125 (326)
T ss_dssp -----GGGCSEEEECCCCC------CH---HHHHHHHHHH----HHHHHHHHHHHTCCSEEEECS
T ss_pred -----hCCCCEEEEcCCCCCCC-CCCH---HHHHHHHHHH----HHHHHHHHHHHCCCeEEEEeC
Confidence 12459999999975432 2222 2334455444 555555555544 46666653
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.019 Score=52.56 Aligned_cols=40 Identities=28% Similarity=0.414 Sum_probs=36.5
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChh
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLE 51 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~ 51 (330)
.+++||+++|.|.++-+|+.++..|+..|++|.++.|+..
T Consensus 156 i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~ 195 (285)
T 3p2o_A 156 IDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTK 195 (285)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCch
Confidence 5799999999999888999999999999999999987643
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=95.34 E-value=0.31 Score=44.96 Aligned_cols=113 Identities=22% Similarity=0.182 Sum_probs=71.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCC--CEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRG--ARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G--~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
+++.|+|+ |.+|..++..|+..+ ..|++.+++.++++....++...... ....++. . | +.++
T Consensus 1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~-~~~~~v~--~-~--~~~a--------- 64 (310)
T 2xxj_A 1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPF-AHPVWVW--A-G--SYGD--------- 64 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGG-SCCCEEE--E-C--CGGG---------
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhh-cCCeEEE--E-C--CHHH---------
Confidence 47899998 999999999999987 48999999988887766666553211 1122333 2 2 2222
Q ss_pred hcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEc
Q psy13409 95 DNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLS 155 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iS 155 (330)
+..-|++|..+|....+ ..+.. +.+..|.-- ++.+.+.+.+.. .+.||++|
T Consensus 65 --~~~aD~Vii~ag~~~~~-g~~r~---dl~~~n~~i----~~~i~~~i~~~~p~a~iiv~t 116 (310)
T 2xxj_A 65 --LEGARAVVLAAGVAQRP-GETRL---QLLDRNAQV----FAQVVPRVLEAAPEAVLLVAT 116 (310)
T ss_dssp --GTTEEEEEECCCCCCCT-TCCHH---HHHHHHHHH----HHHHHHHHHHHCTTCEEEECS
T ss_pred --hCCCCEEEECCCCCCCC-CcCHH---HHHHhhHHH----HHHHHHHHHHHCCCcEEEEec
Confidence 23569999999976433 22222 334445444 555555555544 46666653
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=95.31 E-value=0.021 Score=53.49 Aligned_cols=37 Identities=30% Similarity=0.430 Sum_probs=31.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChh
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLE 51 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~ 51 (330)
.|.++||+||+|++|...+..+...|++|+++.+..+
T Consensus 167 ~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~ 203 (357)
T 1zsy_A 167 PGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRP 203 (357)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCS
T ss_pred CCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCcc
Confidence 6899999999999999988877778999888776543
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.03 Score=51.38 Aligned_cols=68 Identities=9% Similarity=0.085 Sum_probs=46.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.|.++||+|+ |++|...+..+...|++|++++ ++++++.+ +++ +... ++ | |.+.+
T Consensus 142 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~-~~l---------Ga~~-v~--~--d~~~v-------- 196 (315)
T 3goh_A 142 KQREVLIVGF-GAVNNLLTQMLNNAGYVVDLVS-ASLSQALA-AKR---------GVRH-LY--R--EPSQV-------- 196 (315)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHHTCEEEEEC-SSCCHHHH-HHH---------TEEE-EE--S--SGGGC--------
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEE-ChhhHHHH-HHc---------CCCE-EE--c--CHHHh--------
Confidence 6899999999 9999999888888899999999 76665543 222 2222 22 2 21211
Q ss_pred hcCCCeeEEEEcCCC
Q psy13409 95 DNESAIHLLINNAGV 109 (330)
Q Consensus 95 ~~~g~iDvlInnAG~ 109 (330)
.+.+|++|.++|.
T Consensus 197 --~~g~Dvv~d~~g~ 209 (315)
T 3goh_A 197 --TQKYFAIFDAVNS 209 (315)
T ss_dssp --CSCEEEEECC---
T ss_pred --CCCccEEEECCCc
Confidence 4579999999985
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=95.22 E-value=0.2 Score=46.38 Aligned_cols=113 Identities=12% Similarity=0.127 Sum_probs=69.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCC--EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGA--RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
.+++.|+|+ |.+|..++..|+..+. .|++.+++.++++....++..... .. ..+.+.. | +.++
T Consensus 5 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~-~~--~~~~v~~-~--~~~a-------- 69 (318)
T 1ez4_A 5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQA-FT--APKKIYS-G--EYSD-------- 69 (318)
T ss_dssp BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGG-GS--CCCEEEE-C--CGGG--------
T ss_pred CCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHH-hc--CCeEEEE-C--CHHH--------
Confidence 368999999 9999999999999886 899999999888877777765432 11 2222222 2 2221
Q ss_pred HhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEE
Q psy13409 94 LDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINL 154 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~i 154 (330)
+..-|++|..+|....+. .+ -.+.+..|.-- ++.+.+.+.+.. .+.+|++
T Consensus 70 ---~~~aDvVii~ag~~~~~g-~~---R~dl~~~n~~i----~~~i~~~i~~~~p~a~iiv~ 120 (318)
T 1ez4_A 70 ---CKDADLVVITAGAPQKPG-ES---RLDLVNKNLNI----LSSIVKPVVDSGFDGIFLVA 120 (318)
T ss_dssp ---GTTCSEEEECCCC--------------CHHHHHHH----HHHHHHHHHHTTCCSEEEEC
T ss_pred ---hCCCCEEEECCCCCCCCC-CC---HHHHHHHHHHH----HHHHHHHHHHhCCCeEEEEe
Confidence 234699999999754321 11 12334445444 555555555554 4566665
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.072 Score=49.46 Aligned_cols=103 Identities=17% Similarity=0.155 Sum_probs=63.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHC-CCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKR-GARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~-G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
-.|.+++|.|+ |++|...+..+... |++|+++++++++++.+. ++ +... ++ |..+ +..+.+ .+
T Consensus 170 ~~g~~vlv~Ga-G~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~-~l---------Ga~~-~i--~~~~-~~~~~v-~~ 233 (345)
T 3jv7_A 170 GPGSTAVVIGV-GGLGHVGIQILRAVSAARVIAVDLDDDRLALAR-EV---------GADA-AV--KSGA-GAADAI-RE 233 (345)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHH-HT---------TCSE-EE--ECST-THHHHH-HH
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH-Hc---------CCCE-EE--cCCC-cHHHHH-HH
Confidence 36899999998 99999887776666 789999999988765432 21 2222 22 2222 222222 22
Q ss_pred HHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCC
Q psy13409 93 ILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLA 158 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~ 158 (330)
+.. ...+|++|.++|.. . .++..++.+.. +|+++.++...
T Consensus 234 ~t~-g~g~d~v~d~~G~~--------~---------------~~~~~~~~l~~--~G~iv~~G~~~ 273 (345)
T 3jv7_A 234 LTG-GQGATAVFDFVGAQ--------S---------------TIDTAQQVVAV--DGHISVVGIHA 273 (345)
T ss_dssp HHG-GGCEEEEEESSCCH--------H---------------HHHHHHHHEEE--EEEEEECSCCT
T ss_pred HhC-CCCCeEEEECCCCH--------H---------------HHHHHHHHHhc--CCEEEEECCCC
Confidence 221 12699999999842 1 13344444433 58999887654
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=95.09 E-value=0.13 Score=50.43 Aligned_cols=83 Identities=7% Similarity=0.080 Sum_probs=54.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHC-----CCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKR-----GARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~-----G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
+.+++.|.||++..|.+++..|+.+ +..|++.++++++++...+......+......++... +|. +..
T Consensus 27 ~~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t----~D~---~ea 99 (472)
T 1u8x_X 27 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAAT----TDP---EEA 99 (472)
T ss_dssp CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEE----SCH---HHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEE----CCH---HHH
Confidence 4568999999887788899889988 5679999999988777543322211222234455442 232 112
Q ss_pred HHHHHhcCCCeeEEEEcCCCCC
Q psy13409 90 AQEILDNESAIHLLINNAGVMM 111 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~ 111 (330)
+ ..-|++|..+|...
T Consensus 100 l-------~~AD~VViaag~~~ 114 (472)
T 1u8x_X 100 F-------TDVDFVMAHIRVGK 114 (472)
T ss_dssp H-------SSCSEEEECCCTTH
T ss_pred H-------cCCCEEEEcCCCcc
Confidence 2 23599999998754
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=95.08 E-value=0.081 Score=52.02 Aligned_cols=81 Identities=15% Similarity=0.117 Sum_probs=53.9
Q ss_pred CCEEEEEcCCC-chHHHHHHHHHHC----CCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 16 GKTAIVTGSNT-GIGKCTANELAKR----GARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 16 gk~aLITGas~-gIG~aia~~L~~~----G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.+++.|.||++ |.|.+++..|+.. |.+|++.++++++++...+......+......++... +|. +..+
T Consensus 3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~t----tD~---~eal 75 (480)
T 1obb_A 3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKT----MNL---DDVI 75 (480)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEE----SCH---HHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEE----CCH---HHHh
Confidence 46899999988 8899999988854 7899999999988877655443322222233444432 232 1122
Q ss_pred HHHHhcCCCeeEEEEcCCCC
Q psy13409 91 QEILDNESAIHLLINNAGVM 110 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~ 110 (330)
..-|++|..+|..
T Consensus 76 -------~dAD~VIiaagv~ 88 (480)
T 1obb_A 76 -------IDADFVINTAMVG 88 (480)
T ss_dssp -------TTCSEEEECCCTT
T ss_pred -------CCCCEEEECCCcc
Confidence 2359999999864
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.044 Score=50.11 Aligned_cols=43 Identities=23% Similarity=0.335 Sum_probs=38.3
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAET 55 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~ 55 (330)
.++.|++++|.|+ |.||+++++.|...|++|++.+|+.++.+.
T Consensus 151 ~~l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~ 193 (293)
T 3d4o_A 151 FTIHGANVAVLGL-GRVGMSVARKFAALGAKVKVGARESDLLAR 193 (293)
T ss_dssp SCSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred CCCCCCEEEEEee-CHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence 4689999999996 899999999999999999999999876443
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.3 Score=44.88 Aligned_cols=114 Identities=21% Similarity=0.117 Sum_probs=65.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHC--CCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 18 TAIVTGSNTGIGKCTANELAKR--GARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~--G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
++.|+|+ |.+|..++..|+.. |.+|++.++++++++.....+...........++... .|. ++
T Consensus 2 kI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t-~d~---~~---------- 66 (310)
T 1guz_A 2 KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS-NDY---AD---------- 66 (310)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEE-SCG---GG----------
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEEC-CCH---HH----------
Confidence 6889998 99999999999985 7899999999887775543333211101112233221 222 11
Q ss_pred cCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEc
Q psy13409 96 NESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLS 155 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iS 155 (330)
...-|++|.+++....+ ..+ ..+.+..|..- ++.+.+.+.+.. .+.+|+++
T Consensus 67 -l~~aDvViiav~~p~~~-g~~---r~dl~~~n~~i----~~~i~~~i~~~~~~~~viv~t 118 (310)
T 1guz_A 67 -TANSDIVIITAGLPRKP-GMT---REDLLMKNAGI----VKEVTDNIMKHSKNPIIIVVS 118 (310)
T ss_dssp -GTTCSEEEECCSCCCCT-TCC---HHHHHHHHHHH----HHHHHHHHHHHCSSCEEEECC
T ss_pred -HCCCCEEEEeCCCCCCC-CCC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEEc
Confidence 13469999999854321 111 23445555555 344444443333 45666653
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.22 Score=45.68 Aligned_cols=111 Identities=23% Similarity=0.232 Sum_probs=60.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCC--EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGA--RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
+++.|+|+ |.+|..++..|+..|. +|++.+++.++++.....+..... .....++.. . +.+.
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~-~~~~~~i~~--~---~~~a--------- 64 (304)
T 2v6b_A 1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAP-VSHGTRVWH--G---GHSE--------- 64 (304)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCC-TTSCCEEEE--E---CGGG---------
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhh-hcCCeEEEE--C---CHHH---------
Confidence 36889998 9999999999999998 999999998776654444432211 011222321 1 2221
Q ss_pred hcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCC-CeEEE
Q psy13409 95 DNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAP-ARIIN 153 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~-g~IV~ 153 (330)
...-|++|.++|....+. .+ ..+.+..|..- .+.+.+.+.+... +.+|+
T Consensus 65 --~~~aDvVIi~~~~~~~~g-~~---r~dl~~~n~~i----~~~i~~~i~~~~p~~~vi~ 114 (304)
T 2v6b_A 65 --LADAQVVILTAGANQKPG-ES---RLDLLEKNADI----FRELVPQITRAAPDAVLLV 114 (304)
T ss_dssp --GTTCSEEEECC----------------CHHHHHHH----HHHHHHHHHHHCSSSEEEE
T ss_pred --hCCCCEEEEcCCCCCCCC-Cc---HHHHHHhHHHH----HHHHHHHHHHhCCCeEEEE
Confidence 234699999998654221 11 22334455544 4555555544333 44444
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=95.06 E-value=0.078 Score=49.18 Aligned_cols=113 Identities=19% Similarity=0.135 Sum_probs=63.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCC--EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGA--RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
.+++.|+|+ |.+|..++..|+..|. +|++.+.+.++++....++..... ....+.+. . .+.+
T Consensus 7 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~---~~~~~~i~-~--~~~~--------- 70 (318)
T 1y6j_A 7 RSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLP---FMGQMSLY-A--GDYS--------- 70 (318)
T ss_dssp CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCC---CTTCEEEC-----CGG---------
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHH---hcCCeEEE-E--CCHH---------
Confidence 467899998 9999999999999987 899999998776655555543211 01122221 1 1211
Q ss_pred HhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEE
Q psy13409 94 LDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINL 154 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~i 154 (330)
.+..-|++|..+|....+ ..+ ..+.+..|..- ++.+.+.+.+.. .+.+|++
T Consensus 71 --a~~~aDvVii~~g~p~k~-g~~---r~dl~~~n~~i----~~~i~~~i~~~~p~a~viv~ 122 (318)
T 1y6j_A 71 --DVKDCDVIVVTAGANRKP-GET---RLDLAKKNVMI----AKEVTQNIMKYYNHGVILVV 122 (318)
T ss_dssp --GGTTCSEEEECCCC-------C---HHHHHHHHHHH----HHHHHHHHHHHCCSCEEEEC
T ss_pred --HhCCCCEEEEcCCCCCCC-CcC---HHHHHHhhHHH----HHHHHHHHHHhCCCcEEEEe
Confidence 123569999999975422 122 22345555555 444455554443 3555543
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=95.04 E-value=0.011 Score=55.12 Aligned_cols=84 Identities=23% Similarity=0.224 Sum_probs=54.8
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEE-EEEccCCCHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVV-IRQLDLSSLKSVRKCA 90 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~-~i~~Dls~~~si~~l~ 90 (330)
.++.|++++|.|++.-+|+.+++.|+..|++|++++|+..++.+..+.+ ....+ ...+..++++++++.+
T Consensus 173 ~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~l---------a~~~~~~t~~~~t~~~~L~e~l 243 (320)
T 1edz_A 173 NRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESL---------KLNKHHVEDLGEYSEDLLKKCS 243 (320)
T ss_dssp CTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCS---------SCCCCEEEEEEECCHHHHHHHH
T ss_pred CCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHH---------hhhcccccccccccHhHHHHHh
Confidence 3799999999999777899999999999999999988843211111000 11111 1111113345566665
Q ss_pred HHHHhcCCCeeEEEEcCCCCC
Q psy13409 91 QEILDNESAIHLLINNAGVMM 111 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~ 111 (330)
.+. |++|..+|...
T Consensus 244 ~~A-------DIVIsAtg~p~ 257 (320)
T 1edz_A 244 LDS-------DVVITGVPSEN 257 (320)
T ss_dssp HHC-------SEEEECCCCTT
T ss_pred ccC-------CEEEECCCCCc
Confidence 543 99999998753
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.046 Score=50.10 Aligned_cols=43 Identities=26% Similarity=0.286 Sum_probs=38.6
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAET 55 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~ 55 (330)
.++.|++++|.|+ |.||+++++.|...|++|++.+|+.++.+.
T Consensus 153 ~~l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~ 195 (300)
T 2rir_A 153 YTIHGSQVAVLGL-GRTGMTIARTFAALGANVKVGARSSAHLAR 195 (300)
T ss_dssp SCSTTSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred CCCCCCEEEEEcc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 4789999999997 999999999999999999999999866443
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=94.97 E-value=0.47 Score=43.78 Aligned_cols=77 Identities=18% Similarity=0.188 Sum_probs=52.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCC--EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGA--RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
+++.|.|+ |.+|.+++..|+..|. +|++.+++.++++.....+..... .....++.. ++.+.
T Consensus 1 mkI~VIGa-G~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~-~~~~~~i~~-----~d~~~--------- 64 (319)
T 1a5z_A 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTP-FTRRANIYA-----GDYAD--------- 64 (319)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG-GSCCCEEEE-----CCGGG---------
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhh-hcCCcEEEe-----CCHHH---------
Confidence 36889998 9999999999999998 999999998887776655543221 111223321 22221
Q ss_pred hcCCCeeEEEEcCCCCC
Q psy13409 95 DNESAIHLLINNAGVMM 111 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~ 111 (330)
....|++|.+++...
T Consensus 65 --~~~aDvViiav~~~~ 79 (319)
T 1a5z_A 65 --LKGSDVVIVAAGVPQ 79 (319)
T ss_dssp --GTTCSEEEECCCCCC
T ss_pred --hCCCCEEEEccCCCC
Confidence 124699999998754
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.058 Score=47.69 Aligned_cols=39 Identities=18% Similarity=0.382 Sum_probs=35.4
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChh
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLE 51 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~ 51 (330)
++++||.+||.|| |.+|..-++.|++.|+.|++++.+..
T Consensus 27 l~L~gk~VLVVGg-G~va~~ka~~Ll~~GA~VtVvap~~~ 65 (223)
T 3dfz_A 27 LDLKGRSVLVVGG-GTIATRRIKGFLQEGAAITVVAPTVS 65 (223)
T ss_dssp ECCTTCCEEEECC-SHHHHHHHHHHGGGCCCEEEECSSCC
T ss_pred EEcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 4799999999998 79999999999999999999987653
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=94.83 E-value=0.042 Score=50.07 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=34.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL 50 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~ 50 (330)
++||+++|.|+++-+|+.++..|+..|++|+++.++.
T Consensus 148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t 184 (276)
T 3ngx_A 148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKT 184 (276)
T ss_dssp CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 8999999999988899999999999999999998754
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=94.82 E-value=0.04 Score=50.08 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=39.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDI 60 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l 60 (330)
.+++++|.|+ ||.|++++..|.+.|+ +|+++.|+.++.+++.+.+
T Consensus 118 ~~~~vlvlGa-Ggaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~ 163 (271)
T 1npy_A 118 KNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALY 163 (271)
T ss_dssp TTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHH
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc
Confidence 5789999997 8999999999999998 7999999998877776554
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.043 Score=49.19 Aligned_cols=46 Identities=30% Similarity=0.445 Sum_probs=39.6
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADD 59 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~ 59 (330)
.+++| +++|.|+ |++|+++++.|.+.|++|++++|+.++.++..+.
T Consensus 113 ~~l~~-~v~iiG~-G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~ 158 (263)
T 2d5c_A 113 IPLKG-PALVLGA-GGAGRAVAFALREAGLEVWVWNRTPQRALALAEE 158 (263)
T ss_dssp CCCCS-CEEEECC-SHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH
T ss_pred CCCCC-eEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 36789 9999997 8899999999999999999999998876665544
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.041 Score=50.43 Aligned_cols=39 Identities=31% Similarity=0.367 Sum_probs=35.7
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL 50 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~ 50 (330)
.+++||+++|.|.++-+|+.++..|+..|++|.++.+..
T Consensus 157 i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T 195 (286)
T 4a5o_A 157 ADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT 195 (286)
T ss_dssp CCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC
Confidence 579999999999988899999999999999999997754
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.05 Score=50.16 Aligned_cols=39 Identities=28% Similarity=0.350 Sum_probs=35.8
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL 50 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~ 50 (330)
.+++||+++|.|.++-+|+.++..|+..|++|.++.|..
T Consensus 161 i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T 199 (300)
T 4a26_A 161 IEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGT 199 (300)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTS
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCC
Confidence 579999999999988899999999999999999998754
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=94.76 E-value=0.03 Score=50.78 Aligned_cols=43 Identities=30% Similarity=0.429 Sum_probs=38.2
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETA 56 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~ 56 (330)
++++++++|.|+ |++|++++..|.+.|++|++.+|+.++.++.
T Consensus 126 ~~~~~~v~iiGa-G~~g~aia~~L~~~g~~V~v~~r~~~~~~~l 168 (275)
T 2hk9_A 126 EVKEKSILVLGA-GGASRAVIYALVKEGAKVFLWNRTKEKAIKL 168 (275)
T ss_dssp TGGGSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSHHHHHHH
T ss_pred CcCCCEEEEECc-hHHHHHHHHHHHHcCCEEEEEECCHHHHHHH
Confidence 578999999997 7999999999999999999999998765544
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.12 Score=45.94 Aligned_cols=93 Identities=19% Similarity=0.323 Sum_probs=58.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCE-EEEEecChhHHHHHHHHHHHh----hcccCCCCeEEEEEccCCCHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGAR-VIMACRSLEKAETAADDIRTS----LKDVKDAGEVVIRQLDLSSLKSVRK 88 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~-Vil~~R~~~~l~~~~~~l~~~----~~~~~~~~~v~~i~~Dls~~~si~~ 88 (330)
+.++++.|.|+ |.+|..++..|.+.|++ |.+.+|+.++.++..+.+.-. ........++.++ = .....+..
T Consensus 8 ~~~m~i~iiG~-G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~--a-v~~~~~~~ 83 (266)
T 3d1l_A 8 IEDTPIVLIGA-GNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIV--S-LKDSAFAE 83 (266)
T ss_dssp GGGCCEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEE--C-CCHHHHHH
T ss_pred CCCCeEEEEcC-CHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEE--e-cCHHHHHH
Confidence 45668999997 99999999999999998 889999988777665442100 0011112233222 2 23345677
Q ss_pred HHHHHHhcCCCeeEEEEcCCCC
Q psy13409 89 CAQEILDNESAIHLLINNAGVM 110 (330)
Q Consensus 89 l~~~i~~~~g~iDvlInnAG~~ 110 (330)
+++++.....+=.++|++.+..
T Consensus 84 v~~~l~~~~~~~~ivv~~s~~~ 105 (266)
T 3d1l_A 84 LLQGIVEGKREEALMVHTAGSI 105 (266)
T ss_dssp HHHHHHTTCCTTCEEEECCTTS
T ss_pred HHHHHHhhcCCCcEEEECCCCC
Confidence 7777765443334677776644
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.022 Score=52.58 Aligned_cols=41 Identities=32% Similarity=0.477 Sum_probs=35.7
Q ss_pred CC-EEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHH
Q psy13409 16 GK-TAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETA 56 (330)
Q Consensus 16 gk-~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~ 56 (330)
|+ ++||+||+|+||...+..+...|++|+++++++++++.+
T Consensus 150 g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~ 191 (330)
T 1tt7_A 150 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYL 191 (330)
T ss_dssp GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHH
T ss_pred CCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 44 799999999999999998888999999999998776544
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.67 E-value=0.32 Score=44.77 Aligned_cols=114 Identities=18% Similarity=0.177 Sum_probs=69.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
++.|+|+ |.+|..++..|+..|. .|++.+++.++++....++...........++... .| .++
T Consensus 1 KI~IiGa-G~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t-~d---~~a----------- 64 (308)
T 2d4a_B 1 MITILGA-GKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGS-NS---YED----------- 64 (308)
T ss_dssp CEEEECC-SHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEE-SC---GGG-----------
T ss_pred CEEEECc-CHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEEC-CC---HHH-----------
Confidence 3788998 9999999999998887 69999999888876666665432111123334321 22 111
Q ss_pred CCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEc
Q psy13409 97 ESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLS 155 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iS 155 (330)
+..-|++|..+|....+ .++.. +.+..|.- +.+.+.+.+.+.. .+.+|++|
T Consensus 65 ~~~aD~Vi~~ag~~~k~-G~~r~---dl~~~n~~----i~~~i~~~i~~~~p~a~iiv~t 116 (308)
T 2d4a_B 65 MRGSDIVLVTAGIGRKP-GMTRE---QLLEANAN----TMADLAEKIKAYAKDAIVVITT 116 (308)
T ss_dssp GTTCSEEEECCSCCCCS-SCCTH---HHHHHHHH----HHHHHHHHHHHHCTTCEEEECC
T ss_pred hCCCCEEEEeCCCCCCC-CCcHH---HHHHHHHH----HHHHHHHHHHHHCCCeEEEEeC
Confidence 23469999999976543 22322 23334443 3556666655543 45666653
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=94.62 E-value=0.042 Score=50.35 Aligned_cols=39 Identities=26% Similarity=0.321 Sum_probs=35.5
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL 50 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~ 50 (330)
.+++||+++|.|.++-+|+.++..|...|++|+++.|+.
T Consensus 157 i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t 195 (285)
T 3l07_A 157 IKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT 195 (285)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc
Confidence 579999999999988899999999999999999987753
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=94.57 E-value=0.11 Score=48.07 Aligned_cols=90 Identities=16% Similarity=0.161 Sum_probs=57.2
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHH-------HHHhhcccCCCCeEEEEEccCCCHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADD-------IRTSLKDVKDAGEVVIRQLDLSSLKS 85 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~-------l~~~~~~~~~~~~v~~i~~Dls~~~s 85 (330)
+.+.+++.|.|. |.+|..+++.|++.|++|++.+|++++.++..+. +.+.. ...++.+ .-+.+...
T Consensus 28 ~~~~~~I~iIG~-G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~----~~aDvVi--~~vp~~~~ 100 (320)
T 4dll_A 28 DPYARKITFLGT-GSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAA----RDADIVV--SMLENGAV 100 (320)
T ss_dssp -CCCSEEEEECC-TTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHH----TTCSEEE--ECCSSHHH
T ss_pred ccCCCEEEEECc-cHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHH----hcCCEEE--EECCCHHH
Confidence 345678999977 9999999999999999999999999877665432 11110 1233333 33445555
Q ss_pred HHHHHH--HHHhcCCCeeEEEEcCCC
Q psy13409 86 VRKCAQ--EILDNESAIHLLINNAGV 109 (330)
Q Consensus 86 i~~l~~--~i~~~~g~iDvlInnAG~ 109 (330)
++.++. .+.+...+-.++|++...
T Consensus 101 ~~~v~~~~~~~~~l~~~~~vi~~st~ 126 (320)
T 4dll_A 101 VQDVLFAQGVAAAMKPGSLFLDMASI 126 (320)
T ss_dssp HHHHHTTTCHHHHCCTTCEEEECSCC
T ss_pred HHHHHcchhHHhhCCCCCEEEecCCC
Confidence 666654 444433334566666553
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=94.55 E-value=0.028 Score=52.95 Aligned_cols=81 Identities=16% Similarity=0.216 Sum_probs=57.2
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecC-------------------hhHHHHHHHHHHHhhcccCCCCe
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRS-------------------LEKAETAADDIRTSLKDVKDAGE 72 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~-------------------~~~l~~~~~~l~~~~~~~~~~~~ 72 (330)
+|++.+|+|.|+ ||+|.++++.|+..|. ++.+++.+ ..+.+.+.+.+++.. +..+
T Consensus 33 ~L~~~~VlivG~-GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~ln----p~v~ 107 (346)
T 1y8q_A 33 RLRASRVLLVGL-KGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLN----PMVD 107 (346)
T ss_dssp HHHTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTC----TTSE
T ss_pred HHhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHC----CCeE
Confidence 578899999998 8999999999999998 78888532 245666666666543 5567
Q ss_pred EEEEEccCCCHHHHHHHHHHHHhcCCCeeEEEEcC
Q psy13409 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNA 107 (330)
Q Consensus 73 v~~i~~Dls~~~si~~l~~~i~~~~g~iDvlInnA 107 (330)
+..+..++++ ..+.++ ...|++|.+.
T Consensus 108 v~~~~~~~~~--~~~~~~-------~~~dvVv~~~ 133 (346)
T 1y8q_A 108 VKVDTEDIEK--KPESFF-------TQFDAVCLTC 133 (346)
T ss_dssp EEEECSCGGG--CCHHHH-------TTCSEEEEES
T ss_pred EEEEecccCc--chHHHh-------cCCCEEEEcC
Confidence 7777766643 112222 3468888765
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.29 Score=48.10 Aligned_cols=44 Identities=32% Similarity=0.308 Sum_probs=38.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHH
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDI 60 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l 60 (330)
-+++.|.|+ |-+|..||..|++.|++|++.+++++.+++..+.+
T Consensus 5 ~~kVgVIGa-G~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i 48 (483)
T 3mog_A 5 VQTVAVIGS-GTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGI 48 (483)
T ss_dssp CCCEEEECC-SHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHH
T ss_pred CCEEEEECc-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHH
Confidence 356777777 99999999999999999999999999888876654
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.38 Score=44.47 Aligned_cols=114 Identities=18% Similarity=0.094 Sum_probs=66.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHC-C--CEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKR-G--ARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~-G--~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
+++.|+||+|.+|.+++..|..+ + ..+++++++. +++...-+++.. ....++..+.. -.+.++
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl~~~----~~~~~v~~~~~-~~~~~~-------- 66 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHI----PTAVKIKGFSG-EDATPA-------- 66 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHHHTS----CSSEEEEEECS-SCCHHH--------
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHhhCC----CCCceEEEecC-CCcHHH--------
Confidence 36899999999999999999876 5 3799999987 444334444431 11122322211 012221
Q ss_pred HhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEc
Q psy13409 94 LDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLS 155 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iS 155 (330)
+...|++|..||....+ .++ -.+.++.|..- ++.+.+.+.+.. .+.++++|
T Consensus 67 ---~~~aDivii~ag~~rkp-G~~---R~dll~~N~~I----~~~i~~~i~~~~p~a~vlvvt 118 (312)
T 3hhp_A 67 ---LEGADVVLISAGVARKP-GMD---RSDLFNVNAGI----VKNLVQQVAKTCPKACIGIIT 118 (312)
T ss_dssp ---HTTCSEEEECCSCSCCT-TCC---HHHHHHHHHHH----HHHHHHHHHHHCTTSEEEECS
T ss_pred ---hCCCCEEEEeCCCCCCC-CCC---HHHHHHHHHHH----HHHHHHHHHHHCCCcEEEEec
Confidence 12469999999976432 223 34455566655 444445554443 45666554
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=94.53 E-value=0.079 Score=47.44 Aligned_cols=78 Identities=17% Similarity=0.215 Sum_probs=56.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHC-CCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 18 TAIVTGSNTGIGKCTANELAKR-GARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~-G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
+++|.|++|.+|+.+++.+.+. ++.|+.+....+.+++... . ... +..|++.++.....+..+.+.
T Consensus 2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~~~---~-------~~D---vvIDfT~p~a~~~~~~~a~~~ 68 (245)
T 1p9l_A 2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLTD---G-------NTE---VVIDFTHPDVVMGNLEFLIDN 68 (245)
T ss_dssp EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHHHH---T-------TCC---EEEECSCTTTHHHHHHHHHHT
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHHhc---c-------CCc---EEEEccChHHHHHHHHHHHHc
Confidence 6899999999999999999876 8888766544433333221 1 122 557999999988888877665
Q ss_pred CCCeeEEEEcCCCC
Q psy13409 97 ESAIHLLINNAGVM 110 (330)
Q Consensus 97 ~g~iDvlInnAG~~ 110 (330)
.++++|...|..
T Consensus 69 --g~~~VigTTG~~ 80 (245)
T 1p9l_A 69 --GIHAVVGTTGFT 80 (245)
T ss_dssp --TCEEEECCCCCC
T ss_pred --CCCEEEcCCCCC
Confidence 478888888743
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.48 E-value=0.15 Score=46.21 Aligned_cols=90 Identities=17% Similarity=0.193 Sum_probs=58.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCC---EEEEEecChhHHHHHHHHHHHhh----cccCCCCeEEEEEccCCCHHHHHH
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGA---RVIMACRSLEKAETAADDIRTSL----KDVKDAGEVVIRQLDLSSLKSVRK 88 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~---~Vil~~R~~~~l~~~~~~l~~~~----~~~~~~~~v~~i~~Dls~~~si~~ 88 (330)
.+++.|.|+ |.+|.+++..|++.|+ +|++.+|+.+++++..+.+.-.. .......++.++-+ .+..+..
T Consensus 3 ~~~I~iIG~-G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav---~p~~~~~ 78 (280)
T 3tri_A 3 TSNITFIGG-GNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAV---KPHQIKM 78 (280)
T ss_dssp CSCEEEESC-SHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECS---CGGGHHH
T ss_pred CCEEEEEcc-cHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEe---CHHHHHH
Confidence 467888888 9999999999999998 89999999988777654310000 00002345555544 3456677
Q ss_pred HHHHHHhc-CCCeeEEEEcCCC
Q psy13409 89 CAQEILDN-ESAIHLLINNAGV 109 (330)
Q Consensus 89 l~~~i~~~-~g~iDvlInnAG~ 109 (330)
+++++... ...=.++|++++.
T Consensus 79 vl~~l~~~~l~~~~iiiS~~ag 100 (280)
T 3tri_A 79 VCEELKDILSETKILVISLAVG 100 (280)
T ss_dssp HHHHHHHHHHTTTCEEEECCTT
T ss_pred HHHHHHhhccCCCeEEEEecCC
Confidence 77776553 3222377776653
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=94.43 E-value=0.079 Score=48.41 Aligned_cols=43 Identities=12% Similarity=0.023 Sum_probs=36.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAAD 58 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~ 58 (330)
+.+++.|.|. |.+|..+++.|++.|++|++.+|++++.++..+
T Consensus 6 ~~~~I~iIG~-G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~ 48 (303)
T 3g0o_A 6 TDFHVGIVGL-GSMGMGAARSCLRAGLSTWGADLNPQACANLLA 48 (303)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH
Confidence 3467888876 999999999999999999999999987766543
|
| >1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* | Back alignment and structure |
|---|
Probab=94.43 E-value=0.046 Score=53.09 Aligned_cols=81 Identities=21% Similarity=0.258 Sum_probs=57.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecCh-------------------hHHHHHHHHHHHhhcccCCCCeE
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSL-------------------EKAETAADDIRTSLKDVKDAGEV 73 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~-------------------~~l~~~~~~l~~~~~~~~~~~~v 73 (330)
|++.+|+|.|+ ||+|.++++.|+..|. ++.+++.+. .+.+.+.+.+++.. +..++
T Consensus 38 L~~~~VlvvG~-GGlGs~va~~La~aGvg~i~ivD~D~Ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~ln----p~v~v 112 (434)
T 1tt5_B 38 LDTCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRV----PNCNV 112 (434)
T ss_dssp HHTCCEEEECS-STHHHHHHHHHHHTTCCCEEEEECCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHS----TTCCC
T ss_pred hcCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEcCCEechhccCCCcCCChhHcCcHHHHHHHHHHHhhC----CCCEE
Confidence 47899999998 9999999999999998 788886431 35566666666543 45667
Q ss_pred EEEEccCCCHHHHHHHHHHHHhcCCCeeEEEEcCC
Q psy13409 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAG 108 (330)
Q Consensus 74 ~~i~~Dls~~~si~~l~~~i~~~~g~iDvlInnAG 108 (330)
..+..++.+.. ..++ ...|++|++..
T Consensus 113 ~~~~~~i~~~~--~~~~-------~~~DlVi~~~D 138 (434)
T 1tt5_B 113 VPHFNKIQDFN--DTFY-------RQFHIIVCGLD 138 (434)
T ss_dssp EEEESCGGGBC--HHHH-------TTCSEEEECCS
T ss_pred EEEecccchhh--HHHh-------cCCCEEEECCC
Confidence 77777765432 1222 34688888753
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=94.42 E-value=0.025 Score=52.54 Aligned_cols=72 Identities=11% Similarity=0.098 Sum_probs=55.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
.++++|.|+ |.+|..+++.|.++|. |++++++++..+ .. . ..+.++.+|.++++.++++
T Consensus 115 ~~~viI~G~-G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~----~--------~~~~~i~gd~~~~~~L~~a------ 173 (336)
T 1lnq_A 115 SRHVVICGW-SESTLECLRELRGSEV-FVLAEDENVRKK-VL----R--------SGANFVHGDPTRVSDLEKA------ 173 (336)
T ss_dssp -CEEEEESC-CHHHHHHHTTGGGSCE-EEEESCGGGHHH-HH----H--------TTCEEEESCTTSHHHHHHT------
T ss_pred cCCEEEECC-cHHHHHHHHHHHhCCc-EEEEeCChhhhh-HH----h--------CCcEEEEeCCCCHHHHHhc------
Confidence 568999997 8999999999999999 999999988765 32 1 2467899999998876543
Q ss_pred cCCCeeEEEEcCC
Q psy13409 96 NESAIHLLINNAG 108 (330)
Q Consensus 96 ~~g~iDvlInnAG 108 (330)
.....|.+|...+
T Consensus 174 ~i~~a~~vi~~~~ 186 (336)
T 1lnq_A 174 NVRGARAVIVDLE 186 (336)
T ss_dssp CSTTEEEEEECCS
T ss_pred ChhhccEEEEcCC
Confidence 2245688887664
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=94.40 E-value=0.18 Score=46.04 Aligned_cols=80 Identities=15% Similarity=0.119 Sum_probs=51.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
.+++.|.||.|.||.++++.|.+.|++|++.+|+.+.. ..+.+ ...++.++-+-. ..+..+++++..
T Consensus 21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~~--~~~~~--------~~aDvVilavp~---~~~~~vl~~l~~ 87 (298)
T 2pv7_A 21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAV--AESIL--------ANADVVIVSVPI---NLTLETIERLKP 87 (298)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGG--HHHHH--------TTCSEEEECSCG---GGHHHHHHHHGG
T ss_pred CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcccC--HHHHh--------cCCCEEEEeCCH---HHHHHHHHHHHh
Confidence 46799999889999999999999999999999986531 11111 234555554432 336666766654
Q ss_pred cCCCeeEEEEcCC
Q psy13409 96 NESAIHLLINNAG 108 (330)
Q Consensus 96 ~~g~iDvlInnAG 108 (330)
...+=.++++.++
T Consensus 88 ~l~~~~iv~~~~s 100 (298)
T 2pv7_A 88 YLTENMLLADLTS 100 (298)
T ss_dssp GCCTTSEEEECCS
T ss_pred hcCCCcEEEECCC
Confidence 3322235555544
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.16 Score=48.35 Aligned_cols=45 Identities=20% Similarity=0.101 Sum_probs=40.1
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAA 57 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~ 57 (330)
..+.+++++|.|+ |.+|...++.+...|++|++.+|+..++++..
T Consensus 180 ~~v~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~ 224 (381)
T 3p2y_A 180 GTVKPASALVLGV-GVAGLQALATAKRLGAKTTGYDVRPEVAEQVR 224 (381)
T ss_dssp CEECCCEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSGGGHHHHH
T ss_pred CCcCCCEEEEECc-hHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 3468999999999 89999999999999999999999998876654
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=94.30 E-value=0.068 Score=49.00 Aligned_cols=41 Identities=22% Similarity=0.264 Sum_probs=36.7
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEK 52 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~ 52 (330)
.++.|++++|.|++.-+|+.+++.|+..|++|.+++++...
T Consensus 155 i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~ 195 (288)
T 1b0a_A 155 IDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKN 195 (288)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSC
T ss_pred CCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCchh
Confidence 57999999999998889999999999999999999876543
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.28 E-value=0.1 Score=47.92 Aligned_cols=43 Identities=23% Similarity=0.207 Sum_probs=37.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAA 57 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~ 57 (330)
.+.+++.|.|. |.+|..+++.|++.|++|++.+|++++.+++.
T Consensus 19 ~~m~~I~iIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~ 61 (310)
T 3doj_A 19 SHMMEVGFLGL-GIMGKAMSMNLLKNGFKVTVWNRTLSKCDELV 61 (310)
T ss_dssp CCSCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSGGGGHHHH
T ss_pred ccCCEEEEECc-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 44578899986 99999999999999999999999988766654
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=94.21 E-value=0.13 Score=46.95 Aligned_cols=86 Identities=10% Similarity=0.111 Sum_probs=59.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHH-------HHHhhcccCCCCeEEEEEccCCCHHHHHH
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADD-------IRTSLKDVKDAGEVVIRQLDLSSLKSVRK 88 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~-------l~~~~~~~~~~~~v~~i~~Dls~~~si~~ 88 (330)
.+++.|.|. |.+|..+++.|++.|++|++.+|++++.++..+. +.+. .. .+ ++..-+.+...++.
T Consensus 15 ~~~I~vIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~----~~-aD--vvi~~vp~~~~~~~ 86 (296)
T 3qha_A 15 QLKLGYIGL-GNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADV----AA-AD--LIHITVLDDAQVRE 86 (296)
T ss_dssp CCCEEEECC-STTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHH----TT-SS--EEEECCSSHHHHHH
T ss_pred CCeEEEECc-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHH----Hh-CC--EEEEECCChHHHHH
Confidence 357888886 8999999999999999999999998876665432 1111 01 23 34445556667777
Q ss_pred HHHHHHhcCCCeeEEEEcCCC
Q psy13409 89 CAQEILDNESAIHLLINNAGV 109 (330)
Q Consensus 89 l~~~i~~~~g~iDvlInnAG~ 109 (330)
+++.+.+...+-.++|++...
T Consensus 87 v~~~l~~~l~~g~ivv~~st~ 107 (296)
T 3qha_A 87 VVGELAGHAKPGTVIAIHSTI 107 (296)
T ss_dssp HHHHHHTTCCTTCEEEECSCC
T ss_pred HHHHHHHhcCCCCEEEEeCCC
Confidence 777776655444677777654
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=94.19 E-value=0.11 Score=50.57 Aligned_cols=51 Identities=25% Similarity=0.245 Sum_probs=39.5
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRT 62 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~ 62 (330)
.+++++|+++|.|. |+.|.++|+.|.++|++|.+.+++........+.+++
T Consensus 4 ~~~~~~k~v~viG~-G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~ 54 (451)
T 3lk7_A 4 ITTFENKKVLVLGL-ARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLE 54 (451)
T ss_dssp CCTTTTCEEEEECC-TTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHH
T ss_pred hhhcCCCEEEEEee-CHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHh
Confidence 34688999999999 8899999999999999999999965322223344443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 330 | ||||
| d1xg5a_ | 257 | c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC41 | 6e-35 | |
| d1wmaa1 | 275 | c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydrox | 6e-35 | |
| d1spxa_ | 264 | c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nemato | 1e-32 | |
| d1yb1a_ | 244 | c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase | 4e-32 | |
| d1sbya1 | 254 | c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase | 1e-29 | |
| d1zk4a1 | 251 | c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase | 2e-29 | |
| d1ydea1 | 250 | c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase | 2e-29 | |
| d2d1ya1 | 248 | c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {T | 3e-29 | |
| d1h5qa_ | 260 | c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Aga | 6e-28 | |
| d1hxha_ | 253 | c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydroge | 8e-28 | |
| d1hdca_ | 254 | c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydr | 2e-27 | |
| d1yo6a1 | 250 | c.2.1.2 (A:1-250) Putative carbonyl reductase snif | 2e-27 | |
| d1xkqa_ | 272 | c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorh | 3e-27 | |
| d2gdza1 | 254 | c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrog | 3e-27 | |
| d2ew8a1 | 247 | c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenas | 4e-27 | |
| d2ae2a_ | 259 | c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu | 1e-26 | |
| d1xhla_ | 274 | c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorh | 2e-26 | |
| d1yxma1 | 297 | c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA re | 2e-26 | |
| d1xq1a_ | 259 | c.2.1.2 (A:) Tropinone reductase {Thale cress (Ara | 3e-26 | |
| d1gz6a_ | 302 | c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase do | 5e-26 | |
| d1bdba_ | 276 | c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehy | 6e-26 | |
| d2c07a1 | 251 | c.2.1.2 (A:54-304) beta-keto acyl carrier protein | 3e-25 | |
| d2bgka1 | 268 | c.2.1.2 (A:11-278) Rhizome secoisolariciresinol de | 2e-24 | |
| d1fmca_ | 255 | c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase | 3e-24 | |
| d1nffa_ | 244 | c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycob | 3e-24 | |
| d1vl8a_ | 251 | c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga | 6e-24 | |
| d1iy8a_ | 258 | c.2.1.2 (A:) Levodione reductase {Corynebacterium | 7e-24 | |
| d1ulsa_ | 242 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 2e-23 | |
| d1pr9a_ | 244 | c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapie | 3e-23 | |
| d1cyda_ | 242 | c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus muscul | 3e-23 | |
| d1zema1 | 260 | c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconoba | 7e-23 | |
| d1w6ua_ | 294 | c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondr | 3e-22 | |
| d1xu9a_ | 269 | c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase | 3e-22 | |
| d1ae1a_ | 258 | c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu | 7e-22 | |
| d2rhca1 | 257 | c.2.1.2 (A:5-261) beta-keto acyl carrier protein r | 9e-22 | |
| d2ag5a1 | 245 | c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR fami | 9e-22 | |
| d1oaaa_ | 259 | c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus mus | 2e-21 | |
| d1ja9a_ | 259 | c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reduc | 3e-21 | |
| d1q7ba_ | 243 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 3e-21 | |
| d1zmta1 | 252 | c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Ag | 4e-21 | |
| d1k2wa_ | 256 | c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter s | 4e-21 | |
| d1edoa_ | 244 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 1e-20 | |
| d1g0oa_ | 272 | c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase | 2e-20 | |
| d1geea_ | 261 | c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megat | 2e-20 | |
| d2a4ka1 | 241 | c.2.1.2 (A:2-242) beta-keto acyl carrier protein r | 2e-20 | |
| d2bd0a1 | 240 | c.2.1.2 (A:2-241) Bacterial sepiapterin reductase | 3e-19 | |
| d1x1ta1 | 260 | c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydroge | 4e-19 | |
| d1gega_ | 255 | c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Kl | 1e-18 | |
| d1jtva_ | 285 | c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroi | 1e-17 | |
| d1uzma1 | 237 | c.2.1.2 (A:9-245) beta-keto acyl carrier protein r | 6e-17 | |
| d1mxha_ | 266 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 2e-16 | |
| d1dhra_ | 236 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 4e-16 | |
| d1snya_ | 248 | c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly | 5e-16 | |
| d1ulua_ | 256 | c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermoph | 2e-15 | |
| d1uaya_ | 241 | c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogena | 2e-14 | |
| d2o23a1 | 248 | c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydr | 2e-14 | |
| d1o5ia_ | 234 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 2e-14 | |
| d1qsga_ | 258 | c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli | 1e-13 | |
| d1fjha_ | 257 | c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase | 2e-12 | |
| d1ooea_ | 235 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 3e-11 | |
| d2pd4a1 | 274 | c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacte | 6e-11 | |
| d1e7wa_ | 284 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 2e-10 | |
| d1d7oa_ | 297 | c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (B | 8e-10 | |
| d2h7ma1 | 268 | c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacteri | 9e-10 | |
| d1jaya_ | 212 | c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase | 4e-09 | |
| d1luaa1 | 191 | c.2.1.7 (A:98-288) Methylene-tetrahydromethanopter | 2e-08 | |
| d2fr1a1 | 259 | c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI | 2e-08 | |
| d1uh5a_ | 329 | c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite | 7e-08 | |
| d1rpna_ | 321 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo | 1e-04 | |
| d1xgka_ | 350 | c.2.1.2 (A:) Negative transcriptional regulator Nm | 2e-04 | |
| d2c5aa1 | 363 | c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {T | 4e-04 | |
| d1y1pa1 | 342 | c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo | 6e-04 | |
| d1db3a_ | 357 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric | 7e-04 | |
| d1kewa_ | 361 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 8e-04 | |
| d1t2aa_ | 347 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H | 0.003 |
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Score = 125 bits (316), Expect = 6e-35
Identities = 43/195 (22%), Positives = 79/195 (40%), Gaps = 20/195 (10%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
R + A+VTG++ GIG A L ++G +V+ R++ E A + +++ G
Sbjct: 6 ERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSA----GYPG 61
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNH 129
++ + DLS+ + + I S + + INNAG+ + G++ F N
Sbjct: 62 TLIPYRCDLSNEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNV 121
Query: 130 LGHYLFTLLLLPRIIK--SAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
L + T + + IIN++S++ S T Y +K
Sbjct: 122 LALSICTREAYQSMKERNVDDGHIININSMSGHRV------------LPLSVTHFYSATK 169
Query: 188 LANILFTTELAKRLQ 202
A T L + L+
Sbjct: 170 YAVTALTEGLRQELR 184
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 275 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 126 bits (317), Expect = 6e-35
Identities = 59/337 (17%), Positives = 101/337 (29%), Gaps = 105/337 (31%)
Query: 19 AIVTGSNTGIGKCTANELAKR-GARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQ 77
A+VTG N GIG +L + V++ R + + + A ++ + Q
Sbjct: 6 ALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQ------AEGLSPRFHQ 59
Query: 78 LDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNHLGHYLF 135
LD+ L+S+R + + +L+NNAG+ E+ TN G
Sbjct: 60 LDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDV 119
Query: 136 TLLLLPRIIKSAPARIINLSSLAHTWGDGSM---------------------------HF 168
LLP I R++N+SS+ S
Sbjct: 120 CTELLPLIKPQ--GRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDT 177
Query: 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLT 228
+ +K + AYG +K+ + + A++L
Sbjct: 178 KKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKL--------------------------- 210
Query: 229 ILLCDANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY 288
+ A PG V T+++
Sbjct: 211 ----------------------SEQRKGDKILLNACCPGWVRTDMAGP------------ 236
Query: 289 QRVGGLFIKSPLQGAQTTLYCA-LDKKCERETGLYYA 324
KSP +GA+T +Y A L E G + +
Sbjct: 237 -----KATKSPEEGAETPVYLALLPPDAEGPHGQFVS 268
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 120 bits (301), Expect = 1e-32
Identities = 41/196 (20%), Positives = 66/196 (33%), Gaps = 23/196 (11%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
TR K AI+TGS+ GIG+ TA A+ GA+V + R E+ E I
Sbjct: 1 TRFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQIL---AAGVSEQ 57
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQL------TEDGYELQF 125
V D+++ + L + +L+NNAG + Q + + Y+
Sbjct: 58 NVNSVVADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATL 117
Query: 126 ATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGR 185
N T +P + + + S + Y
Sbjct: 118 NLNLRSVIALTKKAVPHLSSTKGEIVNISSIASGLHATPDF--------------PYYSI 163
Query: 186 SKLANILFTTELAKRL 201
+K A +T A L
Sbjct: 164 AKAAIDQYTRNTAIDL 179
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Score = 118 bits (296), Expect = 4e-32
Identities = 48/266 (18%), Positives = 85/266 (31%), Gaps = 72/266 (27%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
+ G+ ++TG+ GIG+ TA E AK +++++ + E A + +
Sbjct: 4 SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCK------GLGAK 57
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNA--GVMMCPRQLTEDGYELQFATNHL 130
V +D S+ + + A+++ + +L+NNA + E F N L
Sbjct: 58 VHTFVVDCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVL 117
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
H+ T LP + K+ I+ ++S A + AY SK A
Sbjct: 118 AHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSVPFL--------------LAYCSSKFAA 163
Query: 191 ILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250
+ F L L
Sbjct: 164 VGFHKTLTDELA------------------------------------------------ 175
Query: 251 PPGANITNVNTYAVHPGVVDTELSRH 276
IT V T + P V+T ++
Sbjct: 176 --ALQITGVKTTCLCPNFVNTGFIKN 199
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Score = 112 bits (280), Expect = 1e-29
Identities = 53/302 (17%), Positives = 89/302 (29%), Gaps = 82/302 (27%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L K I + GIG T+ EL KR + + +E A+ LK +
Sbjct: 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAE-----LKAINPKVN 56
Query: 73 VVIRQLDLS-SLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLG 131
+ D++ + +K ++I D + +LIN AG++ + E A N G
Sbjct: 57 ITFHTYDVTVPVAESKKLLKKIFDQLKTVDILINGAGIL------DDHQIERTIAINFTG 110
Query: 132 HYLFTLLLLPRIIKSAP---ARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
T +L K I N+ S+ Y SK
Sbjct: 111 LVNTTTAILDFWDKRKGGPGGIIANICSVTG--------------FNAIHQVPVYSASKA 156
Query: 189 ANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248
A + FT LAK
Sbjct: 157 AVVSFTNSLAKLA----------------------------------------------- 169
Query: 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLY 308
P +T +++PG+ T L F+S + + + + ++ Q Q +
Sbjct: 170 ---PITGVT-AY--SINPGITRTPLVHTFNSWLDVEPRVAELLLSHPTQTSEQCGQNFVK 223
Query: 309 CA 310
Sbjct: 224 AI 225
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Score = 111 bits (278), Expect = 2e-29
Identities = 47/192 (24%), Positives = 71/192 (36%), Gaps = 22/192 (11%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RLDGK AI+TG GIG A + + GA+V++ R + E AA + T +
Sbjct: 3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT-------PDQ 55
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHL 130
+ Q D S K + L+NNAG+ + + T + A N
Sbjct: 56 IQFFQHDSSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLD 115
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
G + T L + R+ G ++ I G + GAY SK A
Sbjct: 116 GVFFGTRLGIQRMKNKG-------------LGASIINMSSIEGFVGDPSLGAYNASKGAV 162
Query: 191 ILFTTELAKRLQ 202
+ + A
Sbjct: 163 RIMSKSAALDCA 174
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 110 bits (277), Expect = 2e-29
Identities = 45/193 (23%), Positives = 65/193 (33%), Gaps = 28/193 (14%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
TR GK +VTG GIG GARV++ + ++
Sbjct: 2 TRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL----------P 51
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNA---GVMMCPRQLTEDGYELQFATN 128
V D++ V+ E + + ++NNA P + + G+ N
Sbjct: 52 GAVFILCDVTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELN 111
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
LG Y T L LP + KS +IN+SSL G Y +K
Sbjct: 112 LLGTYTLTKLALPYLRKSQ-GNVINISSLVGAIGQAQA--------------VPYVATKG 156
Query: 189 ANILFTTELAKRL 201
A T LA
Sbjct: 157 AVTAMTKALALDE 169
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Score = 110 bits (276), Expect = 3e-29
Identities = 39/191 (20%), Positives = 63/191 (32%), Gaps = 28/191 (14%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
GK +VTG GIG+ A A+ GA V + E E A +A
Sbjct: 2 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVA------------EAIG 49
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHL 130
Q+DL + + +E + +L+NNA + + + N
Sbjct: 50 GAFFQVDLEDERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLT 109
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
+ L + K I+N++S+ + + AY SK
Sbjct: 110 APMHLSALAAREMRKVGGGAIVNVASVQGLFAEQENA--------------AYNASKGGL 155
Query: 191 ILFTTELAKRL 201
+ T LA L
Sbjct: 156 VNLTRSLALDL 166
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Score = 107 bits (267), Expect = 6e-28
Identities = 44/191 (23%), Positives = 65/191 (34%), Gaps = 13/191 (6%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
KT IVTG N GIG +A GA V + RS A + + +
Sbjct: 6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFG-----VK 60
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNHL 130
Q D+S+ V K Q+I + I LI NAGV + +LT + + + N
Sbjct: 61 TKAYQCDVSNTDIVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVF 120
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
G + + ++ I ++S + G Y SK A
Sbjct: 121 GVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSL------NGSLTQVFYNSSKAAC 174
Query: 191 ILFTTELAKRL 201
LA
Sbjct: 175 SNLVKGLAAEW 185
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Score = 106 bits (267), Expect = 8e-28
Identities = 35/191 (18%), Positives = 65/191 (34%), Gaps = 26/191 (13%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RL GK A+VTG +G+G L GA+V + + + A ++
Sbjct: 3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL---------GER 53
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMM--CPRQLTEDGYELQFATNHL 130
+ + D+SS + +++L+NNAG+++ + + N
Sbjct: 54 SMFVRHDVSSEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTE 113
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
++ + +K IIN++S++ Y SK A
Sbjct: 114 SVFIGCQQGIAA-MKETGGSIINMASVSSWLPIEQYA--------------GYSASKAAV 158
Query: 191 ILFTTELAKRL 201
T A
Sbjct: 159 SALTRAAALSC 169
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Score = 105 bits (264), Expect = 2e-27
Identities = 40/190 (21%), Positives = 72/190 (37%), Gaps = 25/190 (13%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L GKT I+TG G+G A + GARV++A E+ A ++
Sbjct: 3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL---------GDAA 53
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM--MCPRQLTEDGYELQFATNHLG 131
+ LD++ + ++ + ++ L+NNAG+ M + + + N G
Sbjct: 54 RYQHLDVTIEEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTG 113
Query: 132 HYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANI 191
++ ++P + + I+N+SS A G +YG SK
Sbjct: 114 VFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLALT--------------SSYGASKWGVR 159
Query: 192 LFTTELAKRL 201
+ A L
Sbjct: 160 GLSKLAAVEL 169
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Score = 105 bits (262), Expect = 2e-27
Identities = 47/198 (23%), Positives = 70/198 (35%), Gaps = 20/198 (10%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKRGA--RVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
+ +VTG+N GIG +L K +I R +EKA V
Sbjct: 3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIK---------DSRV 53
Query: 74 VIRQLDLSSLKSVRKCAQEILD--NESAIHLLINNAGVMMCPR---QLTEDGYELQFATN 128
+ L ++ KS+ ++ + + LLINNAGV++ + Q N
Sbjct: 54 HVLPLTVTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVN 113
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSL----AHTWGDGSMHFEDINLEKGYSATGAYG 184
L T LLP + +A + S+ T G D AY
Sbjct: 114 TTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQFPVLAYR 173
Query: 185 RSKLANILFTTELAKRLQ 202
SK A +F LA L+
Sbjct: 174 MSKAAINMFGRTLAVDLK 191
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Score = 105 bits (264), Expect = 3e-27
Identities = 45/195 (23%), Positives = 66/195 (33%), Gaps = 23/195 (11%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
R KT I+TGS+ GIG+ TA A+ GA V + RS E+ E I K +
Sbjct: 2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIIL---KSGVSEKQ 58
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM------MCPRQLTEDGYELQFA 126
V D+++ + L I +L+NNAG D Y
Sbjct: 59 VNSVVADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLK 118
Query: 127 TNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRS 186
N T + P ++ S + S +A + Y +
Sbjct: 119 LNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAG--------------PQAQPDFLYYAIA 164
Query: 187 KLANILFTTELAKRL 201
K A +T A L
Sbjct: 165 KAALDQYTRSTAIDL 179
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Score = 105 bits (262), Expect = 3e-27
Identities = 45/187 (24%), Positives = 75/187 (40%), Gaps = 27/187 (14%)
Query: 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVV 74
+GK A+VTG+ GIG+ A L +GA+V + +LE + + + + +
Sbjct: 2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALH----EQFEPQKTL 57
Query: 75 IRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYL 134
Q D++ + +R ++++D+ + +L+NNAGV +E N +
Sbjct: 58 FIQCDVADQQQLRDTFRKVVDHFGRLDILVNNAGVNNEKN------WEKTLQINLVSVIS 111
Query: 135 FTLLLLPRIIKSAPA---RIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANI 191
T L L + K IIN+SSLA Y SK +
Sbjct: 112 GTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQ--------------PVYCASKHGIV 157
Query: 192 LFTTELA 198
FT A
Sbjct: 158 GFTRSAA 164
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Score = 104 bits (261), Expect = 4e-27
Identities = 50/191 (26%), Positives = 79/191 (41%), Gaps = 24/191 (12%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RL K A++TG GIG+ A A GA + +A A A IR
Sbjct: 2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLV--PAPEAEAAIR------NLGRR 53
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM-MCP-RQLTEDGYELQFATNHL 130
V+ + D+S V ++++ +L+NNAG+ + P +LT + ++ F N
Sbjct: 54 VLTVKCDVSQPGDVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVD 113
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
+L +P + ++ RIINL+S + + Y +K AN
Sbjct: 114 SGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKIEAY--------------THYISTKAAN 159
Query: 191 ILFTTELAKRL 201
I FT LA L
Sbjct: 160 IGFTRALASDL 170
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Score = 103 bits (259), Expect = 1e-26
Identities = 45/191 (23%), Positives = 76/191 (39%), Gaps = 23/191 (12%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L+G TA+VTG + GIG ELA GA V R+ ++ R +V
Sbjct: 6 LEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWR------SKGFKV 59
Query: 74 VIRQLDLSSLKSVRKCAQEILDN-ESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHL 130
DLSS ++ + ++ +++L+NNAG+++ + T + Y L + N
Sbjct: 60 EASVCDLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFE 119
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
Y ++L P + S ++ +SS++ YG +K A
Sbjct: 120 AAYHLSVLAHPFLKASERGNVVFISSVSGALAVPYEA--------------VYGATKGAM 165
Query: 191 ILFTTELAKRL 201
T LA
Sbjct: 166 DQLTRCLAFEW 176
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Score = 103 bits (258), Expect = 2e-26
Identities = 43/193 (22%), Positives = 67/193 (34%), Gaps = 21/193 (10%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
R GK+ I+TGS+ GIG+ A AK GA+V + R+ ++ E I K A +
Sbjct: 1 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQIL---KAGVPAEK 57
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQL----TEDGYELQFATN 128
+ D++ L I +L+NNAG + + Y+ F N
Sbjct: 58 INAVVADVTEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLN 117
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
T +IK+ + S +A Y +K
Sbjct: 118 FQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQAHSGY--------------PYYACAKA 163
Query: 189 ANILFTTELAKRL 201
A +T A L
Sbjct: 164 ALDQYTRCTAIDL 176
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 103 bits (259), Expect = 2e-26
Identities = 47/191 (24%), Positives = 79/191 (41%), Gaps = 18/191 (9%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L G+ AIVTG TGIGK EL + G+ V++A R LE+ ++AAD+++ +L K
Sbjct: 9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQ-AR 67
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHL 130
V+ Q ++ + + V + LD I+ L+NN G ++ G+ TN
Sbjct: 68 VIPIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLT 127
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
G + + +K GS+ + + G+ G ++
Sbjct: 128 GTFYMCKAVYSSWMKE---------------HGGSIVNIIVPTKAGFPLAVHSGAARAGV 172
Query: 191 ILFTTELAKRL 201
T LA
Sbjct: 173 YNLTKSLALEW 183
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 102 bits (256), Expect = 3e-26
Identities = 42/189 (22%), Positives = 60/189 (31%), Gaps = 23/189 (12%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L KT +VTG GIG E A GA + R+ + + K +V
Sbjct: 6 LKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQ------KKGFQV 59
Query: 74 VIRQLDLSSLKSVRKCAQEILDN-ESAIHLLINNAGVMMCPR--QLTEDGYELQFATNHL 130
D S K Q + + +LINN G + T + + +TN
Sbjct: 60 TGSVCDASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLE 119
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
Y + L P + S II +SS+A Y +K A
Sbjct: 120 SAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSASVG--------------SIYSATKGAL 165
Query: 191 ILFTTELAK 199
LA
Sbjct: 166 NQLARNLAC 174
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 103 bits (257), Expect = 5e-26
Identities = 37/193 (19%), Positives = 79/193 (40%), Gaps = 20/193 (10%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETA--ADDIRTSLKDVKDA 70
R DG+ +VTG+ G+G+ A A+RGA V++ + + +++++
Sbjct: 4 RFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRR 63
Query: 71 GEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATN 128
G + D S+++ K + LD I +++NNAG++ +++++ +++ +
Sbjct: 64 GGKAVANYD--SVEAGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVH 121
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
G + T + K RII +S + +G+ Y +KL
Sbjct: 122 LRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGNFGQ--------------ANYSAAKL 167
Query: 189 ANILFTTELAKRL 201
+ L
Sbjct: 168 GLLGLANTLVIEG 180
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Score = 102 bits (254), Expect = 6e-26
Identities = 39/196 (19%), Positives = 70/196 (35%), Gaps = 31/196 (15%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
+L G+ ++TG +G+G+ + GA+V + +S E+ D
Sbjct: 2 KLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDH---------GDN 52
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-------MMCPRQLTEDGYELQF 125
V+ D+ SL+ ++ A + I LI NAG+ + P + + ++ F
Sbjct: 53 VLGIVGDVRSLEDQKQAASRCVARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVF 112
Query: 126 ATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGR 185
N G+ LP ++ S I +S+ Y
Sbjct: 113 HINVKGYIHAVKACLPALVASRGNVIFTISNAGF---------------YPNGGGPLYTA 157
Query: 186 SKLANILFTTELAKRL 201
+K A + ELA L
Sbjct: 158 AKHAIVGLVRELAFEL 173
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 99.7 bits (248), Expect = 3e-25
Identities = 51/191 (26%), Positives = 80/191 (41%), Gaps = 22/191 (11%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
+ K A+VTG+ GIG+ A LAK + VI R+ + ++ D+I+ E
Sbjct: 7 CGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIK------SFGYE 60
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHL 130
D+S + + + +IL + +L+NNAG+ ++ D +E TN
Sbjct: 61 SSGYAGDVSKKEEISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLN 120
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
+ T + R+I + RIIN+SS+ G Y SK
Sbjct: 121 SLFYITQPISKRMINNRYGRIINISSIVGL--------------TGNVGQANYSSSKAGV 166
Query: 191 ILFTTELAKRL 201
I FT LAK L
Sbjct: 167 IGFTKSLAKEL 177
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Score = 98.2 bits (244), Expect = 2e-24
Identities = 37/193 (19%), Positives = 71/193 (36%), Gaps = 24/193 (12%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RL K AI+TG GIG+ TA + GA+V++A + + + ++I
Sbjct: 3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNI-------GSPDV 55
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR----QLTEDGYELQFATN 128
+ D++ + VR + + ++ N GV+ + + ++ N
Sbjct: 56 ISFVHCDVTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDIN 115
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
G +L +I + I+ +S++ G + Y +K
Sbjct: 116 VYGAFLVAKHAARVMIPAKKGSIVFTASISSFTA-------------GEGVSHVYTATKH 162
Query: 189 ANILFTTELAKRL 201
A + TT L L
Sbjct: 163 AVLGLTTSLCTEL 175
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 97.0 bits (241), Expect = 3e-24
Identities = 42/192 (21%), Positives = 74/192 (38%), Gaps = 21/192 (10%)
Query: 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDA 70
+ RLDGK AI+TG+ GIGK A A GA V+++ + + A D+I+ +
Sbjct: 6 NLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQ------QLG 59
Query: 71 GEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM-MCPRQLTEDGYELQFATNH 129
G+ + D++S + + A + + +L+NNAG P + + + N
Sbjct: 60 GQAFACRCDITSEQELSALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNV 119
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
+ + L+ P + G + + E +Y SK A
Sbjct: 120 FSFFHLSQLVAPEME--------------KNGGGVILTITSMAAENKNINMTSYASSKAA 165
Query: 190 NILFTTELAKRL 201
+A L
Sbjct: 166 ASHLVRNMAFDL 177
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 96.7 bits (240), Expect = 3e-24
Identities = 39/191 (20%), Positives = 70/191 (36%), Gaps = 25/191 (13%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RL GK A+V+G G+G + GA+V+ E+ + A ++ A
Sbjct: 3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL---------ADA 53
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQL--TEDGYELQFATNHL 130
LD++ + + +H+L+NNAG++ ++ N
Sbjct: 54 ARYVHLDVTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLT 113
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
G +L ++ + ++ IIN+SS+ G + H Y +K A
Sbjct: 114 GVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACH--------------GYTATKFAV 159
Query: 191 ILFTTELAKRL 201
T A L
Sbjct: 160 RGLTKSTALEL 170
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Score = 96.3 bits (239), Expect = 6e-24
Identities = 46/190 (24%), Positives = 74/190 (38%), Gaps = 20/190 (10%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L G+ A+VTG + G+G A LA+ G V++A R+LE+A AA + K E
Sbjct: 3 LRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTE-----KYGVET 57
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNHLG 131
+ + D+S+ + V+K + + + + ++N AG+ + D + N G
Sbjct: 58 MAFRCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFG 117
Query: 132 HYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANI 191
Y + +S IIN+ SL Y SK
Sbjct: 118 TYYVCREAFSLLRESDNPSIINIGSLTVEEVTMPNISA-------------YAASKGGVA 164
Query: 192 LFTTELAKRL 201
T LAK
Sbjct: 165 SLTKALAKEW 174
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Score = 96.3 bits (239), Expect = 7e-24
Identities = 38/192 (19%), Positives = 68/192 (35%), Gaps = 21/192 (10%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
R + ++TG +G+G+ TA LA GA++ + S E E + + + D E
Sbjct: 1 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPD----AE 56
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR---QLTEDGYELQFATNH 129
V+ D+S V + I NNAG+ T ++ + N
Sbjct: 57 VLTTVADVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINL 116
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
G +L +L + + ++N +S+ G G+ Y +K
Sbjct: 117 RGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGIGNQ--------------SGYAAAKHG 162
Query: 190 NILFTTELAKRL 201
+ T A
Sbjct: 163 VVGLTRNSAVEY 174
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Score = 95.1 bits (236), Expect = 2e-23
Identities = 38/191 (19%), Positives = 67/191 (35%), Gaps = 28/191 (14%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RL K ++TG+ GIG+ T AK GAR++ AA+ +
Sbjct: 2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVG----------- 50
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNHL 130
+D++ SV + E L + + +++ AG+ ++ + +EL N
Sbjct: 51 AHPVVMDVADPASVERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLT 110
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
G +L + + P I+ +S + G Y S
Sbjct: 111 GSFLVAKAASEAMREKNPGSIVLTASRVYL---------------GNLGQANYAASMAGV 155
Query: 191 ILFTTELAKRL 201
+ T LA L
Sbjct: 156 VGLTRTLALEL 166
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 94.3 bits (234), Expect = 3e-23
Identities = 38/194 (19%), Positives = 73/194 (37%), Gaps = 31/194 (15%)
Query: 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDA 70
+ L G+ +VTG+ GIG+ T L GARV+ R+ ++ +
Sbjct: 2 ELFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC---------- 51
Query: 71 GEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMM--CPRQLTEDGYELQFATN 128
+ +DL ++ + + + LL+NNA V + ++T++ ++ F N
Sbjct: 52 PGIEPVCVDLGDWEATERALGSV----GPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVN 107
Query: 129 HLGHYLFTLLLLPRIIK-SAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
+ ++ +I P I+N+SS + Y +K
Sbjct: 108 LRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHS--------------VYCSTK 153
Query: 188 LANILFTTELAKRL 201
A + T +A L
Sbjct: 154 GALDMLTKVMALEL 167
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 94.3 bits (234), Expect = 3e-23
Identities = 40/192 (20%), Positives = 75/192 (39%), Gaps = 31/192 (16%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
G A+VTG+ GIG+ T L GA+V+ R+ + A +
Sbjct: 2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC----------PG 51
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV--MMCPRQLTEDGYELQFATNHL 130
+ +DL + K I + LL+NNA + M ++T++ ++ F+ N
Sbjct: 52 IEPVCVDLGDWDATEKALGGI----GPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLR 107
Query: 131 GHYLFTLLLLPRII-KSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
+ + ++ +I + P I+N+SS+ ++ Y +K A
Sbjct: 108 SVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPNL--------------ITYSSTKGA 153
Query: 190 NILFTTELAKRL 201
+ T +A L
Sbjct: 154 MTMLTKAMAMEL 165
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Score = 93.7 bits (232), Expect = 7e-23
Identities = 47/192 (24%), Positives = 74/192 (38%), Gaps = 23/192 (11%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
+ +GK +VTG+ IG TA LA+ G + + + E E A +R + E
Sbjct: 2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVR------EKGVE 55
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNA---GVMMCPRQLTEDGYELQFATNH 129
D++S ++V ++ + I L NNA G + D + N
Sbjct: 56 ARSYVCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINV 115
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
G + + ++I RI+N +S+A G +M AYG SK A
Sbjct: 116 TGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPPNM--------------AAYGTSKGA 161
Query: 190 NILFTTELAKRL 201
I T A L
Sbjct: 162 IIALTETAALDL 173
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} Length = 294 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Score = 92.5 bits (229), Expect = 3e-22
Identities = 33/192 (17%), Positives = 67/192 (34%), Gaps = 22/192 (11%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
GK A +TG TG+GK L+ GA+ ++A R ++ + A+ I + + +
Sbjct: 22 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISS-----QTGNK 76
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMC---PRQLTEDGYELQFATNH 129
V Q D+ V+ E++ +++INNA R + +
Sbjct: 77 VHAIQCDVRDPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLN 136
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
++ + I A ++++++ G G + +K
Sbjct: 137 GTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSGFVV--------------PSASAKAG 182
Query: 190 NILFTTELAKRL 201
+ LA
Sbjct: 183 VEAMSKSLAAEW 194
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 91.7 bits (227), Expect = 3e-22
Identities = 50/272 (18%), Positives = 78/272 (28%), Gaps = 73/272 (26%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L GK IVTG++ GIG+ A LAK GA V++ RS E + A
Sbjct: 11 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLE-----LGAAS 65
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM--MCPRQLTEDGYELQFATNHL 130
+ + + + + +LI N + N L
Sbjct: 66 AHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFL 125
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
+ + T+ LP + +S I+ +SSLA + AY SK A
Sbjct: 126 SYVVLTVAALPMLKQSN-GSIVVVSSLAGKVAYPMV--------------AAYSASKFAL 170
Query: 191 ILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250
F + + K
Sbjct: 171 DGFFSSIRKEY------------------------------------------------- 181
Query: 251 PPGANITNVNTYAVHPGVVDTELSRHFDSIIP 282
+ NV+ G++DTE + S I
Sbjct: 182 --SVSRVNVSITLCVLGLIDTETAMKAVSGIV 211
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Score = 90.9 bits (225), Expect = 7e-22
Identities = 52/191 (27%), Positives = 75/191 (39%), Gaps = 23/191 (12%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L G TA+VTG + GIG ELA GARV R+ ++ + + R + V
Sbjct: 4 LKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWR------EKGLNV 57
Query: 74 VIRQLDLSSLKSVRKCAQEILD-NESAIHLLINNAGVMMCPR--QLTEDGYELQFATNHL 130
DL S K Q + + +++L+NNAGV++ TE Y + TN
Sbjct: 58 EGSVCDLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFE 117
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
Y + + P + S +I LSS+A S+ Y SK A
Sbjct: 118 AAYHLSQIAYPLLKASQNGNVIFLSSIAGFSALPSVS--------------LYSASKGAI 163
Query: 191 ILFTTELAKRL 201
T LA
Sbjct: 164 NQMTKSLACEW 174
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Score = 90.6 bits (224), Expect = 9e-22
Identities = 40/187 (21%), Positives = 61/187 (32%), Gaps = 16/187 (8%)
Query: 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVV 74
D + A+VTG+ +GIG A L K G RV + R E T ++R + E
Sbjct: 1 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELR------EAGVEAD 54
Query: 75 IRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYL 134
R D+ S+ + +++ + +L+NNAG E EL
Sbjct: 55 GRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAG-RPGGGATAELADELWLDVVETNLTG 113
Query: 135 FTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFT 194
R+ K L + + Y SK + FT
Sbjct: 114 V-----FRVTKQVLKAGGMLERGTGRIVNIASTGGKQG----VVHAAPYSASKHGVVGFT 164
Query: 195 TELAKRL 201
L L
Sbjct: 165 KALGLEL 171
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 90.1 bits (223), Expect = 9e-22
Identities = 45/191 (23%), Positives = 73/191 (38%), Gaps = 30/191 (15%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RLDGK I+T + GIG+ A A+ GA+VI + K + +++
Sbjct: 3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQ-----------ELEKYPG 51
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNHL 130
+ R LD + +K + + + +L N AG + E ++ N
Sbjct: 52 IQTRVLD----VTKKKQIDQFANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVR 107
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
YL LP+++ IIN+SS+A + KG Y +K A
Sbjct: 108 SMYLMIKAFLPKMLAQKSGNIINMSSVASSV-------------KGVVNRCVYSTTKAAV 154
Query: 191 ILFTTELAKRL 201
I T +A
Sbjct: 155 IGLTKSVAADF 165
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 89.9 bits (222), Expect = 2e-21
Identities = 38/202 (18%), Positives = 67/202 (33%), Gaps = 29/202 (14%)
Query: 10 ADTRLDGKTAIVTGSNTGIGKCTANELAK---RGARVIMACRSLEKAETAADDIRTSLKD 66
AD L ++TG++ G G+ A +LA+ G+ ++++ RS +++ D
Sbjct: 1 AD-GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPD 59
Query: 67 VKDAGEVVIRQLDLSSLKSVRKCAQEILDNESA----IHLLINNAGVMMCPR-----QLT 117
+K VV+ DL + V++ + + LLINNA +
Sbjct: 60 LK----VVLAAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVND 115
Query: 118 EDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGY 177
+A N T L S ++ + + Y
Sbjct: 116 LAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTV------------VNISSLCALQPY 163
Query: 178 SATGAYGRSKLANILFTTELAK 199
G Y K A + LA
Sbjct: 164 KGWGLYCAGKAARDMLYQVLAA 185
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 89.0 bits (220), Expect = 3e-21
Identities = 40/191 (20%), Positives = 72/191 (37%), Gaps = 24/191 (12%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMAC-RSLEKAETAADDIRTSLKDVKDAGE 72
L GK A+ TG+ GIG+ A EL +RGA V++ S + AE +++ K +
Sbjct: 4 LAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELK------KLGAQ 57
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHL 130
V Q D+S V + + + + +++N+G+ + ++T++ ++ F N
Sbjct: 58 GVAIQADISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTR 117
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
G + L + G + + G Y SK A
Sbjct: 118 GQFFVAQQGLKHCRRG---------------GRIILTSSIAAVMTGIPNHALYAGSKAAV 162
Query: 191 ILFTTELAKRL 201
F A
Sbjct: 163 EGFCRAFAVDC 173
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Score = 88.7 bits (219), Expect = 3e-21
Identities = 45/188 (23%), Positives = 77/188 (40%), Gaps = 25/188 (13%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
+GK A+VTG++ GIG+ A LA RGA+VI S A+ +D +
Sbjct: 2 FEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLG---------ANG 52
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQF--ATNHLG 131
L+++ S+ ++I + +L+NNAG+ + E TN
Sbjct: 53 KGLMLNVTDPASIESVLEKIRAEFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSS 112
Query: 132 HYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANI 191
+ + ++ ++K RII + S+ T G+G Y +K I
Sbjct: 113 VFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNGGQ--------------ANYAAAKAGLI 158
Query: 192 LFTTELAK 199
F+ LA+
Sbjct: 159 GFSKSLAR 166
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Score = 88.5 bits (219), Expect = 4e-21
Identities = 26/187 (13%), Positives = 54/187 (28%), Gaps = 29/187 (15%)
Query: 18 TAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQ 77
TAIVT G +A L++ G V S ++ + A Q
Sbjct: 2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELE------------AFAETYPQ 49
Query: 78 LDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR---QLTEDGYELQFATNHLGHYL 134
L S + + + + + +L++N + + + Y + +
Sbjct: 50 LKPMSEQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFA 109
Query: 135 FTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFT 194
+ ++ K II ++S + Y ++
Sbjct: 110 LVNAVASQMKKRKSGHIIFITSATPFGPWKELST--------------YTSARAGACTLA 155
Query: 195 TELAKRL 201
L+K L
Sbjct: 156 NALSKEL 162
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Score = 88.7 bits (219), Expect = 4e-21
Identities = 52/191 (27%), Positives = 79/191 (41%), Gaps = 24/191 (12%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RLDGKTA++TGS GIG+ A + GARV +A +LE A A +I
Sbjct: 2 RLDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEI---------GPA 52
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMM--CPRQLTEDGYELQFATNHL 130
LD++ S+ +C E+LD +I +L+NNA + ++T + Y+ FA N
Sbjct: 53 ACAIALDVTDQASIDRCVAELLDRWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVS 112
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
G + +I G ++ +G + G Y +K A
Sbjct: 113 GTLFMMQAVARAMIA-------------GGRGGKIINMASQAGRRGEALVGVYCATKAAV 159
Query: 191 ILFTTELAKRL 201
I T L
Sbjct: 160 ISLTQSAGLNL 170
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Score = 87.1 bits (215), Expect = 1e-20
Identities = 43/188 (22%), Positives = 73/188 (38%), Gaps = 23/188 (12%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMAC-RSLEKAETAADDIRTSLKDVKDAGEVVI 75
+VTG++ GIGK A L K G +V++ RS + AE + I G+ +
Sbjct: 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIE------AYGGQAIT 55
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQL--TEDGYELQFATNHLGHY 133
D+S V + +D I +++NNAG+ + + ++ N G +
Sbjct: 56 FGGDVSKEADVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVF 115
Query: 134 LFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILF 193
L T ++K RIIN++S+ G Y +K I F
Sbjct: 116 LCTQAATKIMMKKRKGRIINIASVVGL--------------IGNIGQANYAAAKAGVIGF 161
Query: 194 TTELAKRL 201
+ A+
Sbjct: 162 SKTAAREG 169
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 87.1 bits (215), Expect = 2e-20
Identities = 39/192 (20%), Positives = 73/192 (38%), Gaps = 24/192 (12%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMAC-RSLEKAETAADDIRTSLKDVKDAG 71
L+GK A+VTG+ GIG+ A EL +RG +VI+ S E AE I+ K+
Sbjct: 15 SLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIK------KNGS 68
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNH 129
+ + ++ ++ + + +E + + ++ +N+GV+ +T + ++ F N
Sbjct: 69 DAACVKANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINT 128
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
G + + G + K Y SK A
Sbjct: 129 RGQFFVAREAYKHL---------------EIGGRLILMGSITGQAKAVPKHAVYSGSKGA 173
Query: 190 NILFTTELAKRL 201
F +A +
Sbjct: 174 IETFARCMAIDM 185
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Score = 86.7 bits (214), Expect = 2e-20
Identities = 41/191 (21%), Positives = 80/191 (41%), Gaps = 22/191 (11%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLE-KAETAADDIRTSLKDVKDAGE 72
L+GK ++TGS+TG+GK A A A+V++ RS E +A + ++I+ K GE
Sbjct: 5 LEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIK------KVGGE 58
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM--MCPRQLTEDGYELQFATNHL 130
+ + D++ V Q + + ++INNAG+ + +++ + TN
Sbjct: 59 AIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLT 118
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
G +L + + ++ + ++ ++ + + Y SK
Sbjct: 119 GAFLGSREAIKYFVE-------------NDIKGTVINMSSVHEKIPWPLFVHYAASKGGM 165
Query: 191 ILFTTELAKRL 201
L T LA
Sbjct: 166 KLMTETLALEY 176
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Score = 86.3 bits (213), Expect = 2e-20
Identities = 38/189 (20%), Positives = 61/189 (32%), Gaps = 24/189 (12%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RL GKT +VTG+ +GIG+ + A+ GA ++ R A + E
Sbjct: 2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALE---------AE 52
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGH 132
+ D+S K+V E L+ +H + + AGV +
Sbjct: 53 AIAVVADVSDPKAVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLT 112
Query: 133 YLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANIL 192
F + + ++ S+A G H Y KL +
Sbjct: 113 GSFLVARKAGEVLEEGGSLVLTGSVAGLGAFGLAH---------------YAAGKLGVVG 157
Query: 193 FTTELAKRL 201
LA L
Sbjct: 158 LARTLALEL 166
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Score = 83.3 bits (205), Expect = 3e-19
Identities = 38/194 (19%), Positives = 67/194 (34%), Gaps = 29/194 (14%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGAR-------VIMACRSLEKAETAADDIRTSLKDVKD 69
++TG+ GIG+ A E A+ ++++ R+ E + + R +
Sbjct: 2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECR------AE 55
Query: 70 AGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFAT 127
D+S + VR+ I++ I L+NNAGV LTE+ ++ T
Sbjct: 56 GALTDTITADISDMADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNT 115
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
N G + T L + + I ++S+A T Y SK
Sbjct: 116 NLKGTFFLTQALFALMERQHSGHIFFITSVAATKAFRHS--------------SIYCMSK 161
Query: 188 LANILFTTELAKRL 201
+
Sbjct: 162 FGQRGLVETMRLYA 175
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Score = 83.3 bits (205), Expect = 4e-19
Identities = 46/191 (24%), Positives = 72/191 (37%), Gaps = 22/191 (11%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRS-LEKAETAADDIRTSLKDVKDAGE 72
L GK A+VTGS +GIG A LA +GA +++ + E + + +
Sbjct: 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAA-----QHGVK 56
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHL 130
V+ DLS ++VR + I +L+NNAG+ + ++ A N
Sbjct: 57 VLYDGADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLS 116
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
+ T LP + K RIIN G + + AY +K
Sbjct: 117 AVFHGTAAALPHMKKQGFGRIIN-----IASAHGLVASAN---------KSAYVAAKHGV 162
Query: 191 ILFTTELAKRL 201
+ FT A
Sbjct: 163 VGFTKVTALET 173
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Score = 81.4 bits (200), Expect = 1e-18
Identities = 40/187 (21%), Positives = 61/187 (32%), Gaps = 21/187 (11%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
K A+VTG+ GIGK A L K G V +A + A+ A +I + G V
Sbjct: 2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEIN------QAGGHAVAV 55
Query: 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQF--ATNHLGHYL 134
++D+S V ++ +++NNAGV + + N G
Sbjct: 56 KVDVSDRDQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIW 115
Query: 135 FTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFT 194
+ K G ++ G Y SK A T
Sbjct: 116 GIQAAVEAFKK-------------EGHGGKIINACSQAGHVGNPELAVYSSSKFAVRGLT 162
Query: 195 TELAKRL 201
A+ L
Sbjct: 163 QTAARDL 169
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 79.5 bits (195), Expect = 1e-17
Identities = 35/185 (18%), Positives = 59/185 (31%), Gaps = 14/185 (7%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
++TG ++GIG A LA ++ +L +T + G +
Sbjct: 3 TVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETL 62
Query: 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFT 136
QLD+ KSV + + + + + G++ L ED N +G
Sbjct: 63 QLDVRDSKSVAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRML 122
Query: 137 LLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTE 196
LP + + R++ S+ G Y SK A
Sbjct: 123 QAFLPDMKRRGSGRVLVTGSVGGLMGLPFN--------------DVYCASKFALEGLCES 168
Query: 197 LAKRL 201
LA L
Sbjct: 169 LAVLL 173
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 76.7 bits (188), Expect = 6e-17
Identities = 29/151 (19%), Positives = 63/151 (41%), Gaps = 19/151 (12%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
++ +VTG N GIG A LA G +V + R + +
Sbjct: 5 FVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK-----------------GL 47
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNHLG 131
++D++ +V + + +++ + +L++NAG+ ++TE+ +E N G
Sbjct: 48 FGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTG 107
Query: 132 HYLFTLLLLPRIIKSAPARIINLSSLAHTWG 162
+ + ++ R+I + S++ WG
Sbjct: 108 AFRVAQRASRSMQRNKFGRMIFIGSVSGLWG 138
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Score = 75.7 bits (185), Expect = 2e-16
Identities = 40/193 (20%), Positives = 68/193 (35%), Gaps = 14/193 (7%)
Query: 18 TAIVTGSNTGIGKCTANELAKRGARVIMACRSLEK-AETAADDIRTSLKDVKDAGEVVIR 76
A++TG IG A L ++G RV++ R E A+ ++ AG V+
Sbjct: 3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNA-----ARAGSAVLC 57
Query: 77 QLDLSSLKSVRKCAQEILDNESA----IHLLINNAGVMM----CPRQLTEDGYELQFATN 128
+ DLS S+ C ++I+D +L+NNA P T + +
Sbjct: 58 KGDLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDA 117
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
+ + + P + A AR + ++ D + Y +K
Sbjct: 118 QVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAMTDLPLPGFCVYTMAKH 177
Query: 189 ANILFTTELAKRL 201
A T A L
Sbjct: 178 ALGGLTRAAALEL 190
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 236 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 74.1 bits (181), Expect = 4e-16
Identities = 22/190 (11%), Positives = 49/190 (25%), Gaps = 33/190 (17%)
Query: 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVV 74
+ + +V G +G R V + +A+ ++ + + A +V
Sbjct: 1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVIVKMTDSFTEQADQVT 60
Query: 75 IRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQL---TEDGYELQFATNHLG 131
L + + ++ AG +L + +
Sbjct: 61 --------------AEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWT 106
Query: 132 HYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANI 191
+ + L + + + + A G M YG +K A
Sbjct: 107 STISSHLATKHLKE--GGLLTLAGAKAALDGTPGMIG--------------YGMAKGAVH 150
Query: 192 LFTTELAKRL 201
LA +
Sbjct: 151 QLCQSLAGKN 160
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 74.4 bits (181), Expect = 5e-16
Identities = 37/193 (19%), Positives = 65/193 (33%), Gaps = 15/193 (7%)
Query: 17 KTAIVTGSNTGIGKCTAN---ELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
+ ++TG N G+G L + + CR+ E+A+ D K+ +
Sbjct: 3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLA-------KNHSNI 55
Query: 74 VIRQLDLSSLKSVRK--CAQEILDNESAIHLLINNAGVMM---CPRQLTEDGYELQFATN 128
I ++DL + + K E + + +++L NNAG+ + TN
Sbjct: 56 HILEIDLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTN 115
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
+ + LP + K+A A + AY SK
Sbjct: 116 TVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQGNTDGGMYAYRTSKS 175
Query: 189 ANILFTTELAKRL 201
A T L+ L
Sbjct: 176 ALNAATKSLSVDL 188
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Score = 72.6 bits (177), Expect = 2e-15
Identities = 30/206 (14%), Positives = 60/206 (29%), Gaps = 31/206 (15%)
Query: 14 LDGKTAIVTG--SNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
L GK A+V G + +G A +L + GA V ++ ++ A K + G
Sbjct: 6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAE-------KLAEALG 58
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQ------LTEDGYELQF 125
++ + D++ + + + + + L++ + L
Sbjct: 59 GALLFRADVTQDEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLAL 118
Query: 126 ATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGR 185
+ P + + I+ L+ A EK
Sbjct: 119 EVSAYSLVAVARRAEPLLREGGG--IVTLTYYAS--------------EKVVPKYNVMAI 162
Query: 186 SKLANILFTTELAKRLQVNFSRHYSC 211
+K A LA L R +
Sbjct: 163 AKAALEASVRYLAYELGPKGVRVNAI 188
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 69.4 bits (169), Expect = 2e-14
Identities = 32/196 (16%), Positives = 66/196 (33%), Gaps = 43/196 (21%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
++A+VTG +G+G+ A L RG RV++ ++ +++
Sbjct: 2 RSALVTGGASGLGRAAALALKARGYRVVVLDLR------------------REGEDLIYV 43
Query: 77 QLDLSSLKSVRKCAQEILDNESAIHLLINN-----AGVMMCPRQLTEDGYELQFATNHLG 131
+ D++ + VR+ + ++ ++ + + N LG
Sbjct: 44 EGDVTREEDVRRAVARAQEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLG 103
Query: 132 HYLFTLLLLPRIIKSAP------ARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGR 185
+ L + ++ P I+N +S+A G AY
Sbjct: 104 TFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQIGQ--------------AAYAA 149
Query: 186 SKLANILFTTELAKRL 201
SK + T A+ L
Sbjct: 150 SKGGVVALTLPAAREL 165
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.5 bits (169), Expect = 2e-14
Identities = 32/193 (16%), Positives = 65/193 (33%), Gaps = 21/193 (10%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
+ G A++TG +G+G TA L +GA ++ E A + +
Sbjct: 2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVT 61
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGH 132
+L + ++ A + + + + T + ++ N +G
Sbjct: 62 SEKDVQTALALAKGKFGRVDV-AVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGT 120
Query: 133 YLFTLLLLPRIIKSAPA------RIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRS 186
+ L+ + ++ P IIN +S+A +G AY S
Sbjct: 121 FNVIRLVAGEMGQNEPDQGGQRGVIINTASVAA--------------FEGQVGQAAYSAS 166
Query: 187 KLANILFTTELAK 199
K + T +A+
Sbjct: 167 KGGIVGMTLPIAR 179
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Score = 69.3 bits (169), Expect = 2e-14
Identities = 30/188 (15%), Positives = 66/188 (35%), Gaps = 37/188 (19%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
+ K +V ++ GIG+ A+ L++ GA V + R+ E + + V D
Sbjct: 2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRY-----VVCD---- 52
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNA--GVMMCPRQLTEDGYELQFATNHLG 131
+RK + + + +L+ NA +LT + ++ + L
Sbjct: 53 ------------LRKDLDLLFEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLN 100
Query: 132 HYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANI 191
LP + + RI+ ++S + +++ +++A
Sbjct: 101 MIKIVRNYLPAMKEKGWGRIVAITSFSVISPIENLYT--------------SNSARMALT 146
Query: 192 LFTTELAK 199
F L+
Sbjct: 147 GFLKTLSF 154
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Score = 67.6 bits (164), Expect = 1e-13
Identities = 27/189 (14%), Positives = 56/189 (29%), Gaps = 18/189 (9%)
Query: 13 RLDGKTAIVTG--SNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDA 70
L GK +VTG S I A + + GA + ++ + +
Sbjct: 2 FLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFA-------AQL 54
Query: 71 GEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHL 130
G ++ Q D++ S+ E+ +++ G QL D
Sbjct: 55 GSDIVLQCDVAEDASIDTMFAELGKVWPKFDGFVHSIGFAPGD-QLDGDYVNAVTREGFK 113
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
+ + + K+ + + S+L G+ + G +K +
Sbjct: 114 IAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAE--------RAIPNYNVMGLAKASL 165
Query: 191 ILFTTELAK 199
+A
Sbjct: 166 EANVRYMAN 174
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Score = 63.8 bits (154), Expect = 2e-12
Identities = 23/195 (11%), Positives = 52/195 (26%), Gaps = 13/195 (6%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
+++G TGIG T L G +++ + + + D +
Sbjct: 2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIADLSTAEGRKQAIADVLAKCSK 61
Query: 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFT 136
+D L + ++L N +++ + L + + +
Sbjct: 62 GMDGLVLCAGLGPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLA 121
Query: 137 LLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTE 196
P + ++ G+ + AY SK A + +
Sbjct: 122 FDKNPLALALEAGEEAKARAIVEHAGEQGGNL-------------AYAGSKNALTVAVRK 168
Query: 197 LAKRLQVNFSRHYSC 211
A R +
Sbjct: 169 RAAAWGEAGVRLNTI 183
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 60.3 bits (145), Expect = 3e-11
Identities = 22/189 (11%), Positives = 42/189 (22%), Gaps = 33/189 (17%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVI 75
IV G +G K G V+ S + + + +
Sbjct: 2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILVDGNKNWTEQE----- 56
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINN---AGVMMCPRQLTEDGYELQFATNHLGH 132
+S+ + L + + + +L +
Sbjct: 57 --------QSILEQTASSLQGSQ-VDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSS 107
Query: 133 YLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANIL 192
+ L + + A SM YG +K A
Sbjct: 108 AIAA--KLATTHLKPGGLLQLTGAAAAMGPTPSMIG--------------YGMAKAAVHH 151
Query: 193 FTTELAKRL 201
T+ LA +
Sbjct: 152 LTSSLAAKD 160
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Score = 59.7 bits (143), Expect = 6e-11
Identities = 15/105 (14%), Positives = 36/105 (34%), Gaps = 9/105 (8%)
Query: 13 RLDGKTAIVTG--SNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDA 70
L GK ++ G +N I A +GA + + E E I ++
Sbjct: 2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLN-ESLEKRVRPIA------QEL 54
Query: 71 GEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQ 115
+ +LD+S + + + + ++ ++++
Sbjct: 55 NSPYVYELDVSKEEHFKSLYNSVKKDLGSLDFIVHSVAFAPKEAL 99
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Score = 58.1 bits (139), Expect = 2e-10
Identities = 21/147 (14%), Positives = 40/147 (27%), Gaps = 29/147 (19%)
Query: 19 AIVTGSNTGIGKCTANELAKRGARVIMAC-RSLEKAETAADDIRTSLKD----------- 66
A+VTG+ +G+ A L G V + RS +A + + +
Sbjct: 5 ALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSN 64
Query: 67 -VKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV---------------- 109
++ + + +L+NNA
Sbjct: 65 VATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEP 124
Query: 110 MMCPRQLTEDGYELQFATNHLGHYLFT 136
+ R+ E F +N + Y
Sbjct: 125 CVGDREAMETATADLFGSNAIAPYFLI 151
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Score = 56.7 bits (135), Expect = 8e-10
Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 13 RLDGKTAIVTG--SNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIR 61
L GK A + G + G G A LA GA +++ R
Sbjct: 5 DLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRR 55
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Score = 56.3 bits (134), Expect = 9e-10
Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 13 RLDGKTAIVTG--SNTGIGKCTANELAKRGARVIMACRSLEKAETAADD 59
LDGK +V+G +++ I A ++GA++++ + D
Sbjct: 3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITD 51
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 53.5 bits (127), Expect = 4e-09
Identities = 20/123 (16%), Positives = 45/123 (36%), Gaps = 1/123 (0%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
+ A++ G+ +GK A LA G +++ R EKAE A + R D G
Sbjct: 2 RVALLGGT-GNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNED 60
Query: 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFT 136
+ + + + +D + ++ V+ ++ +++ +
Sbjct: 61 AAEACDIAVLTIPWEHAIDTARDLKNILREKIVVSPLVPVSRGAKGFTYSSERSAAEIVA 120
Query: 137 LLL 139
+L
Sbjct: 121 EVL 123
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Score = 51.4 bits (122), Expect = 2e-08
Identities = 33/194 (17%), Positives = 64/194 (32%), Gaps = 20/194 (10%)
Query: 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVK 68
A + GK A+V +G +A LA GA V++ R L+KA+ AAD +
Sbjct: 16 AAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVN------- 68
Query: 69 DAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATN 128
+V + + + S + + H + + L + ++ + +
Sbjct: 69 KRFKVNVTAAETADDASRAEAVKG-------AHFVFTAGAIG--LELLPQAAWQNESSIE 119
Query: 129 HLGHYLFTLLLLPRIIKSAP-ARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
+ Y L I + + G G + L + A
Sbjct: 120 IVADYNAQPPLGIGGIDATDKGKEYGGKRAFGALGIGGLKL---KLHRACIAKLFESSEG 176
Query: 188 LANILFTTELAKRL 201
+ + +LAK +
Sbjct: 177 VFDAEEIYKLAKEM 190
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Score = 51.9 bits (123), Expect = 2e-08
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 15 DGKTAIVTGSNTGIGKCTANELAKRGAR-VIMACRSLEKAETAADDIR 61
T +VTG G+G A LA+RGA +++ RS A+ A + +
Sbjct: 8 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVA 55
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 329 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 51.1 bits (120), Expect = 7e-08
Identities = 16/123 (13%), Positives = 38/123 (30%), Gaps = 5/123 (4%)
Query: 15 DGKTAIVTG--SNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSL-KDVKDAG 71
+ + G G G A EL+KR ++I + D+
Sbjct: 1 NEDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDK 60
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHL--LINNAGVMMCPRQLTEDGYELQFATNH 129
+ + LD+ + A +I + ++ N + + + ++ +
Sbjct: 61 DKKMNILDMLPFDASFDTANDIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHS 120
Query: 130 LGH 132
L +
Sbjct: 121 LAN 123
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 40.8 bits (94), Expect = 1e-04
Identities = 37/199 (18%), Positives = 65/199 (32%), Gaps = 24/199 (12%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
++A+VTG G A L ++G RV D R L+++ G++
Sbjct: 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSS------DTRWRLRELGIEGDIQYE 54
Query: 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFT 136
D++ SV++ + E + G T + LG
Sbjct: 55 DGDMADACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTT-------GVVDGLGVT--- 104
Query: 137 LLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTE 196
LL I + +P +S + +G +D N + YG +KL T
Sbjct: 105 -HLLEAIRQFSPETRFYQASTSEMFGLIQAERQDENTP--FYPRSPYGVAKLYGHWITVN 161
Query: 197 LAKRLQVN-----FSRHYS 210
+ ++ H S
Sbjct: 162 YRESFGLHASSGILFNHES 180
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Score = 40.4 bits (93), Expect = 2e-04
Identities = 14/85 (16%), Positives = 23/85 (27%), Gaps = 9/85 (10%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
KT V G+ G A G V SL+ ++++ V +
Sbjct: 4 KTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGL---------IAEELQAIPNVTLF 54
Query: 77 QLDLSSLKSVRKCAQEILDNESAIH 101
Q L + + E
Sbjct: 55 QGPLLNNVPLMDTLFEGAHLAFINT 79
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 363 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 39.5 bits (91), Expect = 4e-04
Identities = 24/190 (12%), Positives = 54/190 (28%), Gaps = 28/190 (14%)
Query: 20 IVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLD 79
+TG+ I A L G VI A D + + +D +D
Sbjct: 19 SITGAGGFIASHIARRLKHEGHYVI------------ASDWKKNEHMTEDMFCDEFHLVD 66
Query: 80 LSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLL 139
L +++ K + + + + + + + + + +
Sbjct: 67 LRVMENCLKVTEGV------------DHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNM 114
Query: 140 LPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATG----AYGRSKLANILFTT 195
+ + R SS + +++L++ + A+G KLA
Sbjct: 115 IEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCK 174
Query: 196 ELAKRLQVNF 205
K +
Sbjct: 175 HYNKDFGIEC 184
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Score = 38.6 bits (88), Expect = 6e-04
Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 4/75 (5%)
Query: 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVV 74
+G +VTG+N + +L + G +V RS K +++
Sbjct: 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASK----LANLQKRWDAKYPGRFET 65
Query: 75 IRQLDLSSLKSVRKC 89
D+ + +
Sbjct: 66 AVVEDMLKQGAYDEV 80
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Score = 38.6 bits (89), Expect = 7e-04
Identities = 37/223 (16%), Positives = 64/223 (28%), Gaps = 23/223 (10%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
K A++TG G A L ++G V R T D + +
Sbjct: 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPK-FHLH 60
Query: 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFT 136
DLS ++ + +E ++ L + V + + E + +G T
Sbjct: 61 YGDLSDTSNLTRILRE--VQPDEVYNLGAMSHVAVS-----FESPEYTADVDAMG----T 109
Query: 137 LLLLPRIIKSA---PARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILF 193
L LL I R S+ + +G + Y +KL
Sbjct: 110 LRLLEAIRFLGLEKKTRFYQAST-SELYGLVQEIP--QKETTPFYPRSPYAVAKLYAYWI 166
Query: 194 TTELAKRLQVN-----FSRHYSCRLPKEILGRTKRFSNLTILL 231
T + + H S R + + R + I
Sbjct: 167 TVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQ 209
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 38.6 bits (89), Expect = 8e-04
Identities = 28/196 (14%), Positives = 56/196 (28%), Gaps = 20/196 (10%)
Query: 20 IVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLD 79
++TG IG + K ++ L A SL D+ ++ D
Sbjct: 4 LITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGN-----LESLSDISESNRYNFEHAD 58
Query: 80 LSSLKSVRKCAQEILDNESAIHL--LINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTL 137
+ + + ++ ++ +HL + + P E T L
Sbjct: 59 ICDSAEITRIFEQY-QPDAVMHLAAESHVDRSITGPAAFIETNIV---GTYALLEVARKY 114
Query: 138 LLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKG--------YSATGAYGRSKLA 189
K R ++S+ +GD E N Y+ + Y SK +
Sbjct: 115 WSALGEDKKNNFRFHHIST-DEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKAS 173
Query: 190 NILFTTELAKRLQVNF 205
+ + +
Sbjct: 174 SDHLVRAWRRTYGLPT 189
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.5 bits (83), Expect = 0.003
Identities = 27/201 (13%), Positives = 52/201 (25%), Gaps = 16/201 (7%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
A++TG G A L ++G V R T + G + +
Sbjct: 2 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLH 61
Query: 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFT 136
DL+ + K E+ E ++ + + T + +G
Sbjct: 62 YGDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYT-------ADVDGVGTLRLL 114
Query: 137 LLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTE 196
+ + S+ + +G + YG +KL
Sbjct: 115 DAVK-TCGLINSVKFYQAST-SELYGKVQEI--PQKETTPFYPRSPYGAAKLYAYWIVVN 170
Query: 197 LAKRLQVN-----FSRHYSCR 212
+ + H S R
Sbjct: 171 FREAYNLFAVNGILFNHESPR 191
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 330 | |||
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 100.0 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 100.0 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 100.0 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 100.0 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 100.0 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 100.0 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 100.0 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 100.0 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 100.0 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 100.0 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 100.0 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 100.0 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 100.0 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 100.0 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 100.0 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 100.0 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 100.0 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 100.0 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 100.0 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 100.0 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 100.0 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 100.0 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 100.0 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 100.0 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 100.0 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 100.0 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 100.0 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 100.0 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 100.0 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 100.0 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 100.0 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 100.0 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 100.0 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 100.0 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 100.0 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 100.0 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 100.0 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 100.0 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 100.0 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 100.0 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 100.0 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 100.0 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 100.0 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 100.0 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 100.0 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 100.0 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 100.0 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 100.0 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 100.0 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 100.0 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 100.0 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 100.0 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 100.0 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 100.0 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 100.0 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 100.0 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 100.0 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 100.0 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 100.0 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 100.0 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 100.0 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 100.0 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 100.0 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 100.0 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 100.0 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 99.95 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 99.8 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 99.76 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 99.72 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 99.69 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 99.68 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 99.67 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.67 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.66 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 99.64 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 99.63 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 99.63 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 99.6 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 99.59 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 99.57 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 99.57 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 99.55 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.54 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 99.53 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 99.52 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 99.52 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.5 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 99.5 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 99.5 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 99.47 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 99.23 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 99.19 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 99.17 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 99.09 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 98.97 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 98.97 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 98.93 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 98.69 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 97.94 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.74 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 97.69 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 97.64 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 97.56 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 97.56 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 97.5 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 97.49 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 97.47 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 97.43 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.37 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 97.34 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 97.33 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 97.31 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 97.27 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.22 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 97.19 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 97.15 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 97.13 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 97.13 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 97.07 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 97.0 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.96 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 96.95 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 96.93 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 96.89 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.8 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 96.78 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 96.74 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 96.64 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 96.58 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.57 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 96.54 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 96.54 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 96.52 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.5 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 96.49 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 96.46 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 96.43 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 96.38 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.35 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 96.34 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 96.33 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 96.29 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 96.29 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.27 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 96.2 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.16 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 96.15 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 96.13 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.12 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 96.09 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 96.08 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.08 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 95.97 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 95.92 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 95.87 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 95.86 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 95.73 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 95.66 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 95.63 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 95.56 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.52 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.39 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.31 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 95.21 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 95.14 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 94.88 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 94.81 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 94.8 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 94.79 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 94.76 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 94.62 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 94.51 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 94.47 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.44 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 94.42 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 94.23 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.2 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 94.18 | |
| d1p9oa_ | 290 | Phosphopantothenoylcysteine synthetase {Human (Hom | 94.09 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 93.96 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 93.84 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 93.67 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 93.65 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 93.62 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 93.6 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 93.49 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 93.16 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 93.09 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 93.03 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 92.95 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 92.87 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 92.87 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 92.8 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 92.79 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 92.62 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 92.59 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 92.57 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 92.5 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 92.47 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 92.47 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 92.45 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 92.45 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 92.39 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 92.22 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 92.2 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 92.03 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 92.0 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 91.96 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 91.94 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 91.88 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 91.87 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 91.87 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 91.82 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 91.75 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 91.7 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 91.57 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 91.55 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 91.49 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 91.27 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 91.25 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 91.22 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 91.16 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 91.1 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 91.03 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 90.99 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 90.88 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 90.83 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 90.81 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 90.7 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 90.64 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 90.57 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 90.52 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 90.45 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 90.33 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 89.86 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 89.58 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 89.42 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 88.52 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 88.42 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 88.4 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 88.33 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 88.16 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 87.96 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 87.76 | |
| d1u0sy_ | 118 | CheY protein {Thermotoga maritima [TaxId: 2336]} | 87.68 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 87.63 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 87.55 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 87.31 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 87.0 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 86.99 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 86.86 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 86.85 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 86.74 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 86.71 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 86.6 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 86.49 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 86.18 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 85.99 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 85.7 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 85.56 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 85.51 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 85.42 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 85.15 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 85.12 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 84.61 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 84.54 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 84.43 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 84.3 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 83.94 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 83.73 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 83.54 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 83.23 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 82.99 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 82.95 | |
| d2fr1a2 | 209 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 82.73 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 81.11 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 80.85 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 80.77 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 80.5 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 80.09 |
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.7e-49 Score=360.06 Aligned_cols=241 Identities=21% Similarity=0.296 Sum_probs=215.2
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
.+++|+||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++++. +.++.++.||++++++++++
T Consensus 5 d~m~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~------g~~~~~~~~Dvs~~~~~~~~ 78 (255)
T d1fmca_ 5 DNLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL------GGQAFACRCDITSEQELSAL 78 (255)
T ss_dssp GGGCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHH
T ss_pred CCCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHc------CCcEEEEEccCCCHHHHHHH
Confidence 356899999999999999999999999999999999999999999999999873 67899999999999999999
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCCC-CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 90 AQEILDNESAIHLLINNAGVMMCP-RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~~-~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
++++.+.+|++|+||||||...+. .+.+.++|++++++|+.+++++++.++|+|.++++|+||++||.++..+.
T Consensus 79 ~~~~~~~~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Ii~isS~~~~~~~----- 153 (255)
T d1fmca_ 79 ADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKN----- 153 (255)
T ss_dssp HHHHHHHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCC-----
T ss_pred HHHHHHHcCCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccccchhccc-----
Confidence 999999999999999999987643 57899999999999999999999999999999999999999999988775
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
++..+|++||+|+++|+++||.|++
T Consensus 154 ---------~~~~~Y~asKaal~~lt~~lA~el~---------------------------------------------- 178 (255)
T d1fmca_ 154 ---------INMTSYASSKAAASHLVRNMAFDLG---------------------------------------------- 178 (255)
T ss_dssp ---------TTCHHHHHHHHHHHHHHHHHHHHHH----------------------------------------------
T ss_pred ---------cccccchhHHHHHHHHHHHHHHHhC----------------------------------------------
Confidence 7889999999999999999999999
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+ .|||||+|+||+|+|++.+...... ..+... .|++| +++|+|+|++++||+++ .++|+||+.|.-.
T Consensus 179 ----~---~gIrVN~I~PG~i~T~~~~~~~~~e-~~~~~~~~~pl~R--~g~pedvA~~v~fL~S~-~s~~itG~~i~vD 247 (255)
T d1fmca_ 179 ----E---KNIRVNGIAPGAILTDALKSVITPE-IEQKMLQHTPIRR--LGQPQDIANAALFLCSP-AASWVSGQILTVS 247 (255)
T ss_dssp ----T---TTEEEEEEEECSBCSHHHHTTCCHH-HHHHHHHTCSSCS--CBCHHHHHHHHHHHHSG-GGTTCCSCEEEES
T ss_pred ----c---cCeEEEEeeeCcCcChHhhccCCHH-HHHHHHhcCCCCC--CcCHHHHHHHHHHHhCc-hhcCCcCCEEEEC
Confidence 6 8999999999999999987655432 222333 34555 89999999999999965 6889999988654
Q ss_pred C
Q psy13409 327 D 327 (330)
Q Consensus 327 ~ 327 (330)
+
T Consensus 248 G 248 (255)
T d1fmca_ 248 G 248 (255)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.3e-48 Score=356.32 Aligned_cols=240 Identities=23% Similarity=0.293 Sum_probs=213.2
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
+|+||++|||||++|||+++|+.|+++|++|++++|+.+++++..+++.+.. +.++.++.+|+++++++++++++
T Consensus 2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~-----g~~~~~~~~Dv~~~~~v~~~~~~ 76 (251)
T d1vl8a_ 2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY-----GVETMAFRCDVSNYEEVKKLLEA 76 (251)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-----CCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh-----CCcEEEEEccCCCHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999988887653 67899999999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 93 ILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
+.+.+|+||+||||||+... ..+.+.++|++.+++|+.++++++|.++|+|.+++.|+||+++|..+....
T Consensus 77 ~~~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~~~~~~~------- 149 (251)
T d1vl8a_ 77 VKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVT------- 149 (251)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCCC-------
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccchhcccc-------
Confidence 99999999999999998653 378899999999999999999999999999999989999999997664431
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
.+...+|++||+|+++|+++||.|++
T Consensus 150 ------~~~~~~Y~asKaal~~lt~~lA~e~~------------------------------------------------ 175 (251)
T d1vl8a_ 150 ------MPNISAYAASKGGVASLTKALAKEWG------------------------------------------------ 175 (251)
T ss_dssp ------SSSCHHHHHHHHHHHHHHHHHHHHHG------------------------------------------------
T ss_pred ------CccccchHHHHHhHHHHHHHHHHHhc------------------------------------------------
Confidence 26778999999999999999999999
Q ss_pred CCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 251 PPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 251 ~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+ .|||||+|+||+|+|++.+.........++.. .|++| +.+|+|+|++++||+++ .++|+||+.|.-.
T Consensus 176 --~---~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~pl~R--~~~pedvA~~v~fL~S~-~a~~itG~~i~vD 245 (251)
T d1vl8a_ 176 --R---YGIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLKRIPLGR--TGVPEDLKGVAVFLASE-EAKYVTGQIIFVD 245 (251)
T ss_dssp --G---GTCEEEEEEECCBCSTTTHHHHTCHHHHHHHHHTCTTSS--CBCGGGGHHHHHHHHSG-GGTTCCSCEEEES
T ss_pred --c---cCeEEEEEeeCcccCHHHHhccCCHHHHHHHHhcCCCCC--CCCHHHHHHHHHHHhCc-hhCCCcCcEEEeC
Confidence 6 89999999999999999887655544444444 35555 99999999999999966 6789999998654
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=100.00 E-value=6.8e-49 Score=358.14 Aligned_cols=239 Identities=26% Similarity=0.346 Sum_probs=210.1
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
...|+||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++++. +.++.++.+|+++++++++++
T Consensus 5 ~f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~------g~~~~~~~~Dvt~~~~v~~~~ 78 (251)
T d2c07a1 5 YYCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSF------GYESSGYAGDVSKKEEISEVI 78 (251)
T ss_dssp CCCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTT------TCCEEEEECCTTCHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEccCCCHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999998763 678999999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 91 QEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
+++.+.+|++|+||||||..... .+.+.++|++++++|+.++++++++++|+|++++.|+||++||.++..+.
T Consensus 79 ~~~~~~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~----- 153 (251)
T d2c07a1 79 NKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGN----- 153 (251)
T ss_dssp HHHHHHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC-----
T ss_pred HHHHHhcCCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCHHhcCCC-----
Confidence 99999999999999999987643 67889999999999999999999999999999999999999999998875
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
+...+|++||+|+++|+|+||.|++
T Consensus 154 ---------~~~~~Y~asKaal~~ltr~lA~el~---------------------------------------------- 178 (251)
T d2c07a1 154 ---------VGQANYSSSKAGVIGFTKSLAKELA---------------------------------------------- 178 (251)
T ss_dssp ---------TTCHHHHHHHHHHHHHHHHHHHHHG----------------------------------------------
T ss_pred ---------CCCHHHHHHHHHHHHHHHHHHHHhh----------------------------------------------
Confidence 7889999999999999999999999
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+ .|||||+|+||+|+|++.....+ ...+... .|++| +.+|+|+|++++||+++ .++|+||+.|.-.
T Consensus 179 ----~---~gIrVN~V~PG~v~T~~~~~~~~--~~~~~~~~~~pl~R--~~~pedvA~~v~fL~S~-~s~~itG~~i~vD 246 (251)
T d2c07a1 179 ----S---RNITVNAIAPGFISSDMTDKISE--QIKKNIISNIPAGR--MGTPEEVANLACFLSSD-KSGYINGRVFVID 246 (251)
T ss_dssp ----G---GTEEEEEEEECSBCC-----CCH--HHHHHHHTTCTTSS--CBCHHHHHHHHHHHHSG-GGTTCCSCEEEES
T ss_pred ----h---hCeEEEEEccCCEecccccccCH--HHHHHHHhcCCCCC--CcCHHHHHHHHHHHhCc-hhCCCcCcEEEEC
Confidence 6 89999999999999999876542 2223333 35565 99999999999999966 6789999998654
Q ss_pred C
Q psy13409 327 D 327 (330)
Q Consensus 327 ~ 327 (330)
+
T Consensus 247 G 247 (251)
T d2c07a1 247 G 247 (251)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.8e-49 Score=356.99 Aligned_cols=233 Identities=24% Similarity=0.360 Sum_probs=208.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
+|+||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++ +.++.++.+|+++++++++++++
T Consensus 1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~---------~~~~~~~~~Dv~~~~~v~~~~~~ 71 (243)
T d1q7ba_ 1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYL---------GANGKGLMLNVTDPASIESVLEK 71 (243)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH---------GGGEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHh---------CCCCcEEEEEecCHHHhhhhhhh
Confidence 589999999999999999999999999999999999999988887776 34578899999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 93 ILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
+.+.+|++|+||||||..... .+.+.++|++.+++|+.++++++|.++|+|+++++|+||++||.++..+.
T Consensus 72 ~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~~------- 144 (243)
T d1q7ba_ 72 IRAEFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGN------- 144 (243)
T ss_dssp HHHHTCSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC-------
T ss_pred hhcccCCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecchhhcCCC-------
Confidence 999999999999999987643 78899999999999999999999999999999989999999999988875
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
+...+|++||+|+++|++++|.|++
T Consensus 145 -------~~~~~Y~asKaal~~lt~~lA~ela------------------------------------------------ 169 (243)
T d1q7ba_ 145 -------GGQANYAAAKAGLIGFSKSLAREVA------------------------------------------------ 169 (243)
T ss_dssp -------TTCHHHHHHHHHHHHHHHHHHHHHG------------------------------------------------
T ss_pred -------CCCHHHHHHHHHHHHHHHHHHHHhC------------------------------------------------
Confidence 7889999999999999999999999
Q ss_pred CCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 251 PPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 251 ~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+ .|||||+|+||+|+|++.+...... .+... .|++| +.+|+|+|++++||+++ .++|+||+.|.-.
T Consensus 170 --~---~gIrVN~I~PG~i~T~~~~~~~~~~--~~~~~~~~pl~R--~~~pedvA~~v~fL~S~-~s~~itGq~i~vd 237 (243)
T d1q7ba_ 170 --S---RGITVNVVAPGFIETDMTRALSDDQ--RAGILAQVPAGR--LGGAQEIANAVAFLASD-EAAYITGETLHVN 237 (243)
T ss_dssp --G---GTEEEEEEEECSBCCHHHHTSCHHH--HHHHHTTCTTSS--CBCHHHHHHHHHHHHSG-GGTTCCSCEEEES
T ss_pred --c---cCeEEEEEecceEechhhhhhhhhH--HHHHHhcCCCCC--CCCHHHHHHHHHHHhCc-hhcCCcCCeEEEC
Confidence 6 8999999999999999987764322 22332 35555 89999999999999965 6789999998654
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=100.00 E-value=3.2e-48 Score=355.03 Aligned_cols=241 Identities=17% Similarity=0.189 Sum_probs=211.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
+|+||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++.+.. .+.++.++.||++|++++++++++
T Consensus 1 rl~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~----~~~~~~~~~~Dvt~~~~v~~~~~~ 76 (258)
T d1iy8a_ 1 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETA----PDAEVLTTVADVSDEAQVEAYVTA 76 (258)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHC----TTCCEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhC----CCCeEEEEeccCCCHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999888887653 466899999999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCC---CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 93 ILDNESAIHLLINNAGVMMC---PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~---~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
+.+.+|++|+||||||+..+ ..+.+.++|++++++|+.++++++|.++|+|++++.|+||++||.++..+.
T Consensus 77 ~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~------ 150 (258)
T d1iy8a_ 77 TTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGI------ 150 (258)
T ss_dssp HHHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSBC------
T ss_pred HHHHhCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCCcccccHhhccCC------
Confidence 99999999999999997643 367899999999999999999999999999999999999999999988775
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
+...+|++||+|+.+|+++||.|++
T Consensus 151 --------~~~~~Y~asKaal~~lt~~lA~el~----------------------------------------------- 175 (258)
T d1iy8a_ 151 --------GNQSGYAAAKHGVVGLTRNSAVEYG----------------------------------------------- 175 (258)
T ss_dssp --------SSBHHHHHHHHHHHHHHHHHHHHHG-----------------------------------------------
T ss_pred --------CCchHHHHHHHHHHHHHHHHHHHhC-----------------------------------------------
Confidence 7889999999999999999999999
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCC------chhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCce
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSI------IPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGL 321 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~------~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~ 321 (330)
+ .|||||+|+||+|+|++....... ....+... .|++| +.+|+|+|++++||+++ .++|+||+
T Consensus 176 ---~---~gIrVN~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~pl~R--~~~p~dvA~~v~fL~S~-~s~~itG~ 246 (258)
T d1iy8a_ 176 ---R---YGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVNPSKR--YGEAPEIAAVVAFLLSD-DASYVNAT 246 (258)
T ss_dssp ---G---GTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTTCTTCS--CBCHHHHHHHHHHHTSG-GGTTCCSC
T ss_pred ---c---cCceEEEEeeCcccCHHHHHHHhhcCcccHHHHHHHHHhcCCCCC--CcCHHHHHHHHHHHhCc-hhcCCcCc
Confidence 6 899999999999999987544221 11112222 24555 89999999999999965 68899999
Q ss_pred ecccCC
Q psy13409 322 YYAKAD 327 (330)
Q Consensus 322 ~~~~~~ 327 (330)
.|.-.+
T Consensus 247 ~i~VDG 252 (258)
T d1iy8a_ 247 VVPIDG 252 (258)
T ss_dssp EEEEST
T ss_pred eEEcCc
Confidence 886543
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=100.00 E-value=5.9e-48 Score=353.43 Aligned_cols=239 Identities=24% Similarity=0.277 Sum_probs=213.2
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
++|+||++|||||++|||+++|+.|+++|++|++++|+.++++++.++++.. +.++.++.||++++++++++++
T Consensus 4 f~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~------g~~~~~~~~Dv~~~~~v~~~~~ 77 (259)
T d2ae2a_ 4 WNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSK------GFKVEASVCDLSSRSERQELMN 77 (259)
T ss_dssp TCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCEEEEEECCTTCHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCCceEEEeeCCCHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999999998763 6789999999999999999999
Q ss_pred HHHhcCC-CeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 92 EILDNES-AIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 92 ~i~~~~g-~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
++.+.++ ++|++|||||..... .+.+.++|++++++|+.+++++++.++|+|.+++.|+||++||..+..+.
T Consensus 78 ~~~~~~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~----- 152 (259)
T d2ae2a_ 78 TVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAV----- 152 (259)
T ss_dssp HHHHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTSCC-----
T ss_pred HHHHHhCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhccccccccccccccccc-----
Confidence 9999886 899999999987543 68899999999999999999999999999999989999999999988775
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
+....|++||+|+++|+|+||.|++
T Consensus 153 ---------~~~~~Y~asKaal~~lt~~lA~el~---------------------------------------------- 177 (259)
T d2ae2a_ 153 ---------PYEAVYGATKGAMDQLTRCLAFEWA---------------------------------------------- 177 (259)
T ss_dssp ---------TTCHHHHHHHHHHHHHHHHHHHHTG----------------------------------------------
T ss_pred ---------ccccchHHHHHHHHHHHHHHHHHhC----------------------------------------------
Confidence 7889999999999999999999999
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHH---HH--HHhhhhhccChHHHHHHHHHhhccccccccCceec
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAW---LY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYY 323 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~ 323 (330)
+ .|||||+|+||+|+|++.+.........+. .. .|++| +.+|+|+|++++||+++ .++|+||+.|
T Consensus 178 ----~---~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~pl~R--~g~pedvA~~v~fL~S~-~s~~itG~~i 247 (259)
T d2ae2a_ 178 ----K---DNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCALRR--MGEPKELAAMVAFLCFP-AASYVTGQII 247 (259)
T ss_dssp ----G---GTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHTSTTCS--CBCHHHHHHHHHHHHSG-GGTTCCSCEE
T ss_pred ----c---CceEEEEeeeCcccCHHHHhhhhchhhHHHHHHHHhcCCCCC--CcCHHHHHHHHHHHhCc-hhCCCcCcEE
Confidence 6 799999999999999998766554332222 22 35555 89999999999999965 6789999998
Q ss_pred ccC
Q psy13409 324 AKA 326 (330)
Q Consensus 324 ~~~ 326 (330)
.-.
T Consensus 248 ~VD 250 (259)
T d2ae2a_ 248 YVD 250 (259)
T ss_dssp EES
T ss_pred EEC
Confidence 643
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=7.3e-48 Score=352.87 Aligned_cols=241 Identities=22% Similarity=0.220 Sum_probs=191.1
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
..+|+||++|||||++|||+++|+.|+++|++|++++|+.++++++.++++.. +.++.++.||+++++++++++
T Consensus 3 ~F~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~~ 76 (259)
T d1xq1a_ 3 RWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKK------GFQVTGSVCDASLRPEREKLM 76 (259)
T ss_dssp TTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTSHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCceEEEeccCCCHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999998763 668999999999999999999
Q ss_pred HHHHhcC-CCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCc
Q psy13409 91 QEILDNE-SAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 91 ~~i~~~~-g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~ 167 (330)
+++.+.+ |++|+||||||...+. .+.+.++|++++++|+.++++++|.++|+|++++.|+||++||..+..+.
T Consensus 77 ~~~~~~~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~---- 152 (259)
T d1xq1a_ 77 QTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSA---- 152 (259)
T ss_dssp HHHHHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC------------
T ss_pred HHHHHHhCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccccccccccccccccccc----
Confidence 9999987 7899999999987643 78899999999999999999999999999999999999999999988774
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
+...+|++||+|+++|+++||.|++
T Consensus 153 ----------~~~~~Y~asKaal~~lt~~lA~e~~--------------------------------------------- 177 (259)
T d1xq1a_ 153 ----------SVGSIYSATKGALNQLARNLACEWA--------------------------------------------- 177 (259)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHHHHHG---------------------------------------------
T ss_pred ----------cccccccccccchhhhhHHHHHHhc---------------------------------------------
Confidence 6788999999999999999999999
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHH-HHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWL-YQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+ .|||||+|+||+|+|++.............. ..|++| +.+|+|+|++++||+++ .++|+||+.|.-.
T Consensus 178 -----~---~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~pl~R--~~~pedvA~~v~fL~S~-~s~~iTG~~i~vD 246 (259)
T d1xq1a_ 178 -----S---DGIRANAVAPAVIATPLAEAVYDDEFKKVVISRKPLGR--FGEPEEVSSLVAFLCMP-AASYITGQTICVD 246 (259)
T ss_dssp -----G---GTCEEEEEECCSCC---------------------------CCGGGGHHHHHHHTSG-GGTTCCSCEEECC
T ss_pred -----c---cCeEEEEeccCcccCHHhhhhchHHHHHHHHhCCCCCC--CcCHHHHHHHHHHHhCc-hhcCCcCcEEEeC
Confidence 6 8999999999999999987654432221111 256776 89999999999999965 6889999998654
Q ss_pred C
Q psy13409 327 D 327 (330)
Q Consensus 327 ~ 327 (330)
+
T Consensus 247 G 247 (259)
T d1xq1a_ 247 G 247 (259)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=100.00 E-value=6.8e-48 Score=352.96 Aligned_cols=239 Identities=26% Similarity=0.313 Sum_probs=203.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecC-hhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRS-LEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~-~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
|+||++|||||++|||+++|++|+++|++|++++|+ .+.++++.+++.+. .+.++.++.+|+++++++++++++
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~-----~g~~~~~~~~Dv~~~~~v~~~~~~ 76 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQ-----HGVKVLYDGADLSKGEAVRGLVDN 76 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHH-----HTSCEEEECCCTTSHHHHHHHHHH
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHh-----cCCcEEEEECCCCCHHHHHHHHHH
Confidence 799999999999999999999999999999999997 56677887777665 367899999999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 93 ILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
+.+.+|++|+||||||..... .+.+.++|++.+++|+.++++++++++|+|++++.|+||++||.++..+.
T Consensus 77 ~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~------- 149 (260)
T d1x1ta1 77 AVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVAS------- 149 (260)
T ss_dssp HHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC-------
T ss_pred HHHHhCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeecccccceecc-------
Confidence 999999999999999987543 78899999999999999999999999999999999999999999998885
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
+...+|++||+|+++|+++||.|++
T Consensus 150 -------~~~~~Y~asKaal~~lt~~lA~el~------------------------------------------------ 174 (260)
T d1x1ta1 150 -------ANKSAYVAAKHGVVGFTKVTALETA------------------------------------------------ 174 (260)
T ss_dssp -------TTCHHHHHHHHHHHHHHHHHHHHHT------------------------------------------------
T ss_pred -------CCcchhhhhhhhHHHhHHHHHHHhc------------------------------------------------
Confidence 7888999999999999999999999
Q ss_pred CCCCCCCceeEEEeeCcccccCcccccCCCc----------hhhHHH--HHHhhhhhccChHHHHHHHHHhhcccccccc
Q psy13409 251 PPGANITNVNTYAVHPGVVDTELSRHFDSII----------PGTAWL--YQRVGGLFIKSPLQGAQTTLYCALDKKCERE 318 (330)
Q Consensus 251 ~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~----------~~~~~~--~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~ 318 (330)
+ .|||||+|+||+|+|++........ ...+.. ..|++| +.+|+|+|++++||+++ .++|+
T Consensus 175 --~---~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl~R--~g~pediA~~v~fL~S~-~a~~i 246 (260)
T d1x1ta1 175 --G---QGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSEKQPSLQ--FVTPEQLGGTAVFLASD-AAAQI 246 (260)
T ss_dssp --T---TTEEEEEEEECCBCC------------------------CHHHHCTTCC--CBCHHHHHHHHHHHHSG-GGTTC
T ss_pred --h---hCcEEEEEecCCCCChhhhhhhhhhhhhcCCChHHHHHHHHHhcCCCCC--CcCHHHHHHHHHHHhCh-hhCCC
Confidence 6 8999999999999999986553321 011111 235555 89999999999999966 68899
Q ss_pred CceecccCC
Q psy13409 319 TGLYYAKAD 327 (330)
Q Consensus 319 ~G~~~~~~~ 327 (330)
||+.|.-.+
T Consensus 247 tG~~i~vDG 255 (260)
T d1x1ta1 247 TGTTVSVDG 255 (260)
T ss_dssp CSCEEEEST
T ss_pred cCCEEEECc
Confidence 999986543
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=100.00 E-value=6.3e-48 Score=350.92 Aligned_cols=236 Identities=26% Similarity=0.296 Sum_probs=196.0
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
+|+||++|||||++|||+++|+.|+++|++|++++|+..+. ..+.+++ .+.++.++.||+++++++++++++
T Consensus 2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~--~~~~~~~------~g~~~~~~~~Dvs~~~~v~~~~~~ 73 (247)
T d2ew8a1 2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPE--AEAAIRN------LGRRVLTVKCDVSQPGDVEAFGKQ 73 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHH--HHHHHHH------TTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHH--HHHHHHH------cCCcEEEEEeeCCCHHHHHHHHHH
Confidence 69999999999999999999999999999999999987532 2233333 367899999999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 93 ILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
+.+.+|++|+||||||+.... .+.+.++|++.+++|+.+++++++.++|+|++++.|+||++||.++..+.
T Consensus 74 ~~~~~G~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~------- 146 (247)
T d2ew8a1 74 VISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKI------- 146 (247)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCC-------
T ss_pred HHHHcCCCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCccccccchhcccC-------
Confidence 999999999999999987643 68899999999999999999999999999999999999999999988775
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
+...+|++||+|+++|+++||.|++
T Consensus 147 -------~~~~~Y~asKaal~~ltk~lA~ela------------------------------------------------ 171 (247)
T d2ew8a1 147 -------EAYTHYISTKAANIGFTRALASDLG------------------------------------------------ 171 (247)
T ss_dssp -------SSCHHHHHHHHHHHHHHHHHHHHHG------------------------------------------------
T ss_pred -------cccccchhhhccHHHHHHHHHHHhc------------------------------------------------
Confidence 7889999999999999999999999
Q ss_pred CCCCCCCceeEEEeeCcccccCcccccCCCchhhHHH--HHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 251 PPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWL--YQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 251 ~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+ .|||||+|+||+|+|++.+............ ..+++| +.+|+|+|++++||+++ .++|+||+.|.-.
T Consensus 172 --~---~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~l~r--~~~pedvA~~v~fL~S~-~s~~itG~~i~vD 241 (247)
T d2ew8a1 172 --K---DGITVNAIAPSLVRTATTEASALSAMFDVLPNMLQAIPR--LQVPLDLTGAAAFLASD-DASFITGQTLAVD 241 (247)
T ss_dssp --G---GTEEEEEEEECCC------------------CTTSSSCS--CCCTHHHHHHHHHHTSG-GGTTCCSCEEEES
T ss_pred --c---cCeEEEEEeeCCCCCccccccccchhHHHHHHHhccCCC--CCCHHHHHHHHHHHhCc-hhcCCcCCeEEEC
Confidence 6 8999999999999999987654332222111 235565 89999999999999966 6789999988643
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=1e-47 Score=349.10 Aligned_cols=230 Identities=23% Similarity=0.338 Sum_probs=207.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
+|+||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++ +.++.++.||+++++++++++++
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~Dv~~~~~v~~~~~~ 73 (244)
T d1nffa_ 3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL---------ADAARYVHLDVTQPAQWKAAVDT 73 (244)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT---------GGGEEEEECCTTCHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---------hCcceEEEeecCCHHHHHHHHHH
Confidence 599999999999999999999999999999999999999888777665 34678899999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 93 ILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
+.+.++++|+||||||.... ..+++.++|++++++|+.++++++|.++|.|.+++.|+||++||..+..+.
T Consensus 74 ~~~~~g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~------- 146 (244)
T d1nffa_ 74 AVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGT------- 146 (244)
T ss_dssp HHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC-------
T ss_pred HHHHhCCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEecccccccccc-------
Confidence 99999999999999998754 378899999999999999999999999999999999999999999998775
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
+...+|++||+|+++|+|++|.|++
T Consensus 147 -------~~~~~Y~asKaal~~ltk~lA~el~------------------------------------------------ 171 (244)
T d1nffa_ 147 -------VACHGYTATKFAVRGLTKSTALELG------------------------------------------------ 171 (244)
T ss_dssp -------TTBHHHHHHHHHHHHHHHHHHHHHG------------------------------------------------
T ss_pred -------ccccchhhHHHHHHHHHHHHHHHhc------------------------------------------------
Confidence 7889999999999999999999999
Q ss_pred CCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 251 PPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 251 ~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+ .|||||+|+||+|+|++.....+... ..+++| +.+|+|+|++++||+++ +++|+||+.|.-.
T Consensus 172 --~---~gIrVN~I~PG~i~T~~~~~~~~~~~-----~~pl~R--~~~p~diA~~v~fL~s~-~s~~itG~~i~vD 234 (244)
T d1nffa_ 172 --P---SGIRVNSIHPGLVKTPMTDWVPEDIF-----QTALGR--AAEPVEVSNLVVYLASD-ESSYSTGAEFVVD 234 (244)
T ss_dssp --G---GTEEEEEEEECCBCSGGGTTSCTTCS-----CCSSSS--CBCHHHHHHHHHHHHSG-GGTTCCSCEEEES
T ss_pred --c---cCEEEEEEeeCCccChhHhhhhHHHH-----hccccC--CCCHHHHHHHHHHHhCh-hhCCCcCCEEEEC
Confidence 6 89999999999999999876554322 145666 89999999999999965 6789999988643
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=100.00 E-value=1.1e-47 Score=352.10 Aligned_cols=238 Identities=23% Similarity=0.275 Sum_probs=209.2
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh-hHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL-EKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~-~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
+|+||++|||||++|||+++|++|+++|++|++++|+. +.++++.+++++ .+.++.++.||++++++++++++
T Consensus 4 dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~------~g~~~~~~~~Dvt~~~~v~~~~~ 77 (261)
T d1geea_ 4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKK------VGGEAIAVKGDVTVESDVINLVQ 77 (261)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH------TTCEEEEEECCTTSHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHh------cCCcEEEEEccCCCHHHHHHHHH
Confidence 59999999999999999999999999999999999985 467777777776 36789999999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCC-eEEEEcCCCcccCCCCCcc
Q psy13409 92 EILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPA-RIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g-~IV~iSS~~~~~~~~~~~~ 168 (330)
++.+.+|+||+||||||...+. .+.+.++|++.+++|+.+++++++.++|+|.+++.+ +||++||.++..+.
T Consensus 78 ~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~~~----- 152 (261)
T d1geea_ 78 SAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPW----- 152 (261)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCC-----
T ss_pred HHHHHhCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhcccC-----
Confidence 9999999999999999987643 788999999999999999999999999999887754 58999999988775
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
+...+|++||+|+++|+++||.|++
T Consensus 153 ---------~~~~~Y~asKaal~~lt~~lA~e~~---------------------------------------------- 177 (261)
T d1geea_ 153 ---------PLFVHYAASKGGMKLMTETLALEYA---------------------------------------------- 177 (261)
T ss_dssp ---------TTCHHHHHHHHHHHHHHHHHHHHHG----------------------------------------------
T ss_pred ---------ccccccccCCccchhhHHHHHHHhh----------------------------------------------
Confidence 7889999999999999999999999
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+ .|||||+|+||+|+|++.......+...+... .|++| +.+|+|+|++++||+++ .++|+||+.|.-.
T Consensus 178 ----~---~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~pl~R--~~~pediA~~v~fL~S~-~s~~itG~~i~vD 247 (261)
T d1geea_ 178 ----P---KGIRVNNIGPGAINTPINAEKFADPEQRADVESMIPMGY--IGEPEEIAAVAAWLASS-EASYVTGITLFAD 247 (261)
T ss_dssp ----G---GTCEEEEEEECSBCSGGGHHHHHSHHHHHHHHTTCTTSS--CBCHHHHHHHHHHHHSG-GGTTCCSCEEEES
T ss_pred ----h---hCcEEEEEeeCcCcCHhHhhhcCCHHHHHHHHhcCCCCC--CCCHHHHHHHHHHHhCc-hhcCCcCCeEEEC
Confidence 6 89999999999999999876543333333333 35555 89999999999999965 6789999998654
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=100.00 E-value=4.2e-48 Score=353.56 Aligned_cols=235 Identities=22% Similarity=0.268 Sum_probs=207.9
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
+|+||++|||||++|||+++|++|+++|++|++++|+.++++++.+++ +.++.++.||+++++++++++++
T Consensus 2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~Dv~~~~~v~~~~~~ 72 (254)
T d1hdca_ 2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL---------GDAARYQHLDVTIEEDWQRVVAY 72 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT---------GGGEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---------CCceEEEEcccCCHHHHHHHHHH
Confidence 589999999999999999999999999999999999998887766553 46789999999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 93 ILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
+.+.+|++|+||||||..... .+.+.++|++.+++|+.+++++++.++|+|++++.|+||++||.++..+.
T Consensus 73 ~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~~~~~~~------- 145 (254)
T d1hdca_ 73 AREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGL------- 145 (254)
T ss_dssp HHHHHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC-------
T ss_pred HHHHcCCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeecccccchhcccc-------
Confidence 999999999999999987643 78899999999999999999999999999999999999999999988775
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
+...+|++||+|+++|+++||.|++
T Consensus 146 -------~~~~~Y~asKaal~~lt~~lA~e~a------------------------------------------------ 170 (254)
T d1hdca_ 146 -------ALTSSYGASKWGVRGLSKLAAVELG------------------------------------------------ 170 (254)
T ss_dssp -------TTCHHHHHHHHHHHHHHHHHHHHHG------------------------------------------------
T ss_pred -------cchhhHHHHHHHHHHHHHHHHHHhC------------------------------------------------
Confidence 7889999999999999999999999
Q ss_pred CCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhcc-ChHHHHHHHHHhhccccccccCceecccC
Q psy13409 251 PPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIK-SPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 251 ~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+ .|||||+|+||+|+|++..+.............+++| ++ .|+|+|++++||+++ +++|+||+.|...
T Consensus 171 --~---~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~pl~R--~g~~PedvA~~v~fL~S~-~a~~itG~~i~vD 239 (254)
T d1hdca_ 171 --T---DRIRVNSVHPGMTYTPMTAETGIRQGEGNYPNTPMGR--VGNEPGEIAGAVVKLLSD-TSSYVTGAELAVD 239 (254)
T ss_dssp --G---GTEEEEEEEECSBCCHHHHHHTCCCSTTSCTTSTTSS--CB-CHHHHHHHHHHHHSG-GGTTCCSCEEEES
T ss_pred --C---CceEEEEeeeCcccCccchhcCHHHHHHHHhCCCCCC--CCCCHHHHHHHHHHHhch-hhCCCCCceEEeC
Confidence 6 8999999999999999887654433222222346666 66 699999999999965 6789999998754
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=100.00 E-value=2.2e-47 Score=349.71 Aligned_cols=238 Identities=23% Similarity=0.245 Sum_probs=209.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
+|+||++|||||++|||+++|+.|+++|++|++++|+.+.++++.+++++ .+.++.++.||+++++++++++++
T Consensus 2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~------~g~~~~~~~~Dv~~~~~v~~~~~~ 75 (260)
T d1zema1 2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVRE------KGVEARSYVCDVTSEEAVIGTVDS 75 (260)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHT------TTSCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh------cCCcEEEEEccCCCHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999988876 367899999999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCC---CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 93 ILDNESAIHLLINNAGVMMC---PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~---~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
+.+.+|++|++|||||...+ ..+.+.++|++.+++|+.+++++++.++|+|.+++.|+||++||.++..+.
T Consensus 76 ~~~~~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~~------ 149 (260)
T d1zema1 76 VVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGP------ 149 (260)
T ss_dssp HHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSCC------
T ss_pred HHHHhCCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCCCCCeeechhhccCC------
Confidence 99999999999999997643 368899999999999999999999999999999999999999999988875
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
+...+|++||+|+++|+++||.|++
T Consensus 150 --------~~~~~Y~asKaal~~ltk~lA~el~----------------------------------------------- 174 (260)
T d1zema1 150 --------PNMAAYGTSKGAIIALTETAALDLA----------------------------------------------- 174 (260)
T ss_dssp --------TTBHHHHHHHHHHHHHHHHHHHHHG-----------------------------------------------
T ss_pred --------cchHHHHHHHHHHHHHHHHHHHHhh-----------------------------------------------
Confidence 7889999999999999999999999
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccC-------------CCc-hhhHHHH--HHhhhhhccChHHHHHHHHHhhccc
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFD-------------SII-PGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDK 313 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~-------------~~~-~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~ 313 (330)
+ .|||||+|+||+|+|++..... ... ...+.+. .|++| +.+|+|+|++++||+++
T Consensus 175 ---~---~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl~R--~g~pedvA~~v~fL~S~- 245 (260)
T d1zema1 175 ---P---YNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVPMRR--YGDINEIPGVVAFLLGD- 245 (260)
T ss_dssp ---G---GTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHHHHHTSTTSS--CBCGGGSHHHHHHHHSG-
T ss_pred ---h---hCCEEEEeccCcccCcchhhcchhhhhhhcccccccCHHHHHHHHHhcCCCCC--CcCHHHHHHHHHHHhCc-
Confidence 6 8999999999999999753221 111 1112222 34555 89999999999999966
Q ss_pred cccccCceecccC
Q psy13409 314 KCERETGLYYAKA 326 (330)
Q Consensus 314 ~~~~~~G~~~~~~ 326 (330)
.++|+||+.|.-.
T Consensus 246 ~s~~itG~~i~VD 258 (260)
T d1zema1 246 DSSFMTGVNLPIA 258 (260)
T ss_dssp GGTTCCSCEEEES
T ss_pred hhcCccCCeEEeC
Confidence 6889999988643
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=100.00 E-value=1.2e-47 Score=349.87 Aligned_cols=239 Identities=27% Similarity=0.338 Sum_probs=208.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
+|+||++|||||++|||+++|+.|+++|++|++++|+.+.++++.+++. .+.++.++.||+++++++++++++
T Consensus 3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~-------~~~~~~~~~~Dv~~~~~v~~~~~~ 75 (251)
T d1zk4a1 3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVG-------TPDQIQFFQHDSSDEDGWTKLFDA 75 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC-------CTTTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC-------CCCcEEEEEccCCCHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999888887764 256899999999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCC-eEEEEcCCCcccCCCCCccc
Q psy13409 93 ILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPA-RIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g-~IV~iSS~~~~~~~~~~~~~ 169 (330)
+.+.+|++|+||||||.... ..+.+.++|++.+++|+.+++++++.++|+|.+++.| +||++||.++..+.
T Consensus 76 ~~~~~G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~~~~------ 149 (251)
T d1zk4a1 76 TEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGD------ 149 (251)
T ss_dssp HHHHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSCC------
T ss_pred HHHHhCCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccceeccC------
Confidence 99999999999999998754 3788999999999999999999999999999988754 89999999988775
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
+...+|++||+|+.+|++++|.|+...
T Consensus 150 --------~~~~~Y~asKaal~~lt~~lA~e~~l~--------------------------------------------- 176 (251)
T d1zk4a1 150 --------PSLGAYNASKGAVRIMSKSAALDCALK--------------------------------------------- 176 (251)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHHHHT---------------------------------------------
T ss_pred --------CCchhHHHHHHHHhcchHHHHHHHhcC---------------------------------------------
Confidence 788999999999999999999995310
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHH-HHHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWL-YQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+ .|||||+|+||+|+|++.............. ..|++| +.+|+|+|++++||+++ .++|+||+.|.-.
T Consensus 177 ---~---~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~pl~R--~~~pedvA~~v~fL~S~-~s~~itG~~i~vD 245 (251)
T d1zk4a1 177 ---D---YDVRVNTVHPGYIKTPLVDDLPGAEEAMSQRTKTPMGH--IGEPNDIAYICVYLASN-ESKFATGSEFVVD 245 (251)
T ss_dssp ---T---CSEEEEEEEECCBCCHHHHTSTTHHHHHTSTTTCTTSS--CBCHHHHHHHHHHHHSG-GGTTCCSCEEEES
T ss_pred ---C---CcEEEEEEeCCCCCChhHHhcCCHHHHHHHHhCCCCCC--CcCHHHHHHHHHHHhCc-hhCCCcCcEEEEC
Confidence 4 7999999999999999987765432211111 245666 89999999999999966 6889999988654
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=2.5e-47 Score=348.62 Aligned_cols=236 Identities=24% Similarity=0.306 Sum_probs=207.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++++. +.++.++.+|++++++++++++++.
T Consensus 1 DgKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~------g~~~~~~~~Dvs~~~~v~~~~~~~~ 74 (257)
T d2rhca1 1 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA------GVEADGRTCDVRSVPEIEALVAAVV 74 (257)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEeecCCHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999763 6789999999999999999999999
Q ss_pred hcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHH--HhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 95 DNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPR--IIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~--l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
+.+|+||+||||||..... .+.+.++|++.+++|+.++++++|+++|+ |.+++.|+||++||..+..+.
T Consensus 75 ~~~g~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~~~~------- 147 (257)
T d2rhca1 75 ERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGV------- 147 (257)
T ss_dssp HHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGTSCC-------
T ss_pred HHhCCCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCccccccccccccccc-------
Confidence 9999999999999987543 68899999999999999999999999997 566677999999999988875
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
+...+|++||+|+++|+|+||+|++
T Consensus 148 -------~~~~~Y~asKaal~~ltk~lA~el~------------------------------------------------ 172 (257)
T d2rhca1 148 -------VHAAPYSASKHGVVGFTKALGLELA------------------------------------------------ 172 (257)
T ss_dssp -------TTCHHHHHHHHHHHHHHHHHHHHTT------------------------------------------------
T ss_pred -------ccchhHHHHHHHHHHHHHHHHHHhh------------------------------------------------
Confidence 7889999999999999999999999
Q ss_pred CCCCCCCceeEEEeeCcccccCcccccCCC---------chhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccC
Q psy13409 251 PPGANITNVNTYAVHPGVVDTELSRHFDSI---------IPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERET 319 (330)
Q Consensus 251 ~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~---------~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~ 319 (330)
+ .|||||+|+||+|+|++.+..... +...+... .|++| +.+|+|+|++++||+++ .++|+|
T Consensus 173 --~---~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~e~~~~~~~~~PlgR--~~~pedia~~v~fL~S~-~s~~it 244 (257)
T d2rhca1 173 --R---TGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARVPIGR--YVQPSEVAEMVAYLIGP-GAAAVT 244 (257)
T ss_dssp --T---SEEEEEEEEECSBCSHHHHHHHHHHHHHTTCCHHHHHHHHHTTSTTSS--CBCHHHHHHHHHHHTSG-GGTTCC
T ss_pred --h---hCcEEEEEeeCCCCCHHHHHHHhhhhhhcccChHHHHHHHHhcCCCCC--CcCHHHHHHHHHHHhCc-hhcCCc
Confidence 6 899999999999999987654211 11222222 34555 89999999999999965 678999
Q ss_pred ceecccC
Q psy13409 320 GLYYAKA 326 (330)
Q Consensus 320 G~~~~~~ 326 (330)
|+.|.-.
T Consensus 245 G~~i~vD 251 (257)
T d2rhca1 245 AQALNVC 251 (257)
T ss_dssp SCEEEES
T ss_pred CceEEEC
Confidence 9998654
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=100.00 E-value=3.2e-47 Score=347.86 Aligned_cols=237 Identities=29% Similarity=0.394 Sum_probs=206.4
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
|+|+||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++ +.++.++.||++++++++++++
T Consensus 1 M~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~---------~~~~~~~~~Dvt~~~~v~~~~~ 71 (256)
T d1k2wa_ 1 MRLDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEI---------GPAACAIALDVTDQASIDRCVA 71 (256)
T ss_dssp CTTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHH---------CTTEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---------CCceEEEEeeCCCHHHHHHHHH
Confidence 4699999999999999999999999999999999999999888877765 4578899999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCCcc
Q psy13409 92 EILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~~~ 168 (330)
++.+.+|++|+||||||.... ..+.+.++|++.+++|+.+++++++.++|.|.+++ +|+||++||.++..+.
T Consensus 72 ~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~----- 146 (256)
T d1k2wa_ 72 ELLDRWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRRGE----- 146 (256)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC-----
T ss_pred HHHHHhCCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhcccc-----
Confidence 999999999999999998753 37889999999999999999999999999876654 6999999999988875
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
+...+|++||+|+++|+++||.|++
T Consensus 147 ---------~~~~~Y~asKaal~~lt~~lA~el~---------------------------------------------- 171 (256)
T d1k2wa_ 147 ---------ALVGVYCATKAAVISLTQSAGLNLI---------------------------------------------- 171 (256)
T ss_dssp ---------TTCHHHHHHHHHHHHHHHHHHHHHG----------------------------------------------
T ss_pred ---------ccccchhhhhhHHHHHHHHHHHHhc----------------------------------------------
Confidence 7889999999999999999999999
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCC---------chhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccc
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSI---------IPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCER 317 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~---------~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~ 317 (330)
+ .|||||+|+||+|+|++++..... ....+... .|++| +.+|+|+|++++||+++ +++|
T Consensus 172 ----~---~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlgR--~~~p~evA~~v~fL~S~-~a~~ 241 (256)
T d1k2wa_ 172 ----R---HGINVNAIAPGVVDGEHWDGVDAKFADYENLPRGEKKRQVGAAVPFGR--MGRAEDLTGMAIFLATP-EADY 241 (256)
T ss_dssp ----G---GTEEEEEEEECCBCCTTHHHHHHHHHHHHTCCTTHHHHHHHHHSTTSS--CBCHHHHHHHHHHTTSG-GGTT
T ss_pred ----c---cCeEEEEEecCCCCchhhhhhhhhhhhhccCChHHHHHHHHhcCCCCC--CcCHHHHHHHHHHHhCc-hhCC
Confidence 6 899999999999999987543221 11122222 35566 99999999999999965 6889
Q ss_pred cCceecccCC
Q psy13409 318 ETGLYYAKAD 327 (330)
Q Consensus 318 ~~G~~~~~~~ 327 (330)
+||+.|.-.+
T Consensus 242 iTG~~i~vDG 251 (256)
T d1k2wa_ 242 IVAQTYNVDG 251 (256)
T ss_dssp CCSCEEEEST
T ss_pred ccCceEEECc
Confidence 9999886543
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=100.00 E-value=1.5e-47 Score=347.95 Aligned_cols=233 Identities=24% Similarity=0.333 Sum_probs=207.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEe-cChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMAC-RSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~-R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
++||||||++|||+++|++|+++|++|++++ |+.+.++++.++++.. +.++.++.+|++++++++++++++.+
T Consensus 2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~------g~~~~~~~~Dv~~~~~v~~~~~~~~~ 75 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAY------GGQAITFGGDVSKEADVEAMMKTAID 75 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH------TCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHc------CCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence 6899999999999999999999999999875 5777788888888764 67899999999999999999999999
Q ss_pred cCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccccc
Q psy13409 96 NESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINL 173 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~ 173 (330)
.+|++|+||||||..... .+.+.++|++.+++|+.++++++|.++|+|+++++|+||++||.++..+.
T Consensus 76 ~~g~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~---------- 145 (244)
T d1edoa_ 76 AWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGN---------- 145 (244)
T ss_dssp HSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC----------
T ss_pred HcCCCCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChhhcCCC----------
Confidence 999999999999987643 78899999999999999999999999999999999999999999998885
Q ss_pred ccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCC
Q psy13409 174 EKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPG 253 (330)
Q Consensus 174 ~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (330)
++..+|++||+|+++|+++||.|++ +
T Consensus 146 ----~~~~~Y~asKaal~~ltk~lA~el~--------------------------------------------------~ 171 (244)
T d1edoa_ 146 ----IGQANYAAAKAGVIGFSKTAAREGA--------------------------------------------------S 171 (244)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHHH--------------------------------------------------T
T ss_pred ----CCCHHHHHHHHHHHHChHHHHHHHh--------------------------------------------------h
Confidence 7889999999999999999999999 6
Q ss_pred CCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 254 ANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 254 ~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
.|||||+|+||+|+|++.+...+. ..+... .+++| +.+|+|+|++++||+.+++++|+||+.|.-.
T Consensus 172 ---~gIrvN~I~PG~i~T~~~~~~~~~--~~~~~~~~~pl~R--~~~p~dvA~~v~fLa~S~~a~~itG~~i~vd 239 (244)
T d1edoa_ 172 ---RNINVNVVCPGFIASDMTAKLGED--MEKKILGTIPLGR--TGQPENVAGLVEFLALSPAASYITGQAFTID 239 (244)
T ss_dssp ---TTEEEEEEEECSBCSHHHHTTCHH--HHHHHHTSCTTCS--CBCHHHHHHHHHHHHHCSGGGGCCSCEEEES
T ss_pred ---hCcEEEEEecceeccHHHHHhhHH--HHHHHHhcCCCCC--CcCHHHHHHHHHHHHCCchhcCCcCCeEEeC
Confidence 899999999999999998775432 222332 35555 9999999999999985668899999998654
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=3.8e-47 Score=344.76 Aligned_cols=231 Identities=21% Similarity=0.270 Sum_probs=200.6
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
|+|+||++|||||++|||+++|+.|+++|++|++++|+.+++++..+++ +..++.||++++++++++++
T Consensus 1 M~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~-----------~~~~~~~Dv~~~~~v~~~~~ 69 (242)
T d1ulsa_ 1 MRLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV-----------GAHPVVMDVADPASVERGFA 69 (242)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-----------TCEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-----------CCeEEEEecCCHHHHHHHHH
Confidence 4689999999999999999999999999999999999998887765433 35678999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 92 EILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
++.+.++++|+||||||+..+. .+.+.++|++.+++|+.++++++|.++|+|.+++.+.|+++||. +..+.
T Consensus 70 ~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~~~ss~-~~~~~------ 142 (242)
T d1ulsa_ 70 EALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASR-VYLGN------ 142 (242)
T ss_dssp HHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCG-GGGCC------
T ss_pred HHHHhcCCceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccccceeeeeccc-cccCC------
Confidence 9999999999999999987643 68999999999999999999999999999998887778777774 44453
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
++..+|++||+|+++|+++||.|++
T Consensus 143 --------~~~~~Y~asKaal~~ltk~lA~ela----------------------------------------------- 167 (242)
T d1ulsa_ 143 --------LGQANYAASMAGVVGLTRTLALELG----------------------------------------------- 167 (242)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHHG-----------------------------------------------
T ss_pred --------CCCcchHHHHHHHHHHHHHHHHHHh-----------------------------------------------
Confidence 6788999999999999999999999
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+ .|||||+|+||+|+|++.....+. ..+... .|++| +.+|+|+|++++||+++ +++|+||+.|.-.
T Consensus 168 ---~---~gIrVN~I~PG~v~T~~~~~~~~~--~~~~~~~~~pl~R--~~~pedia~~v~fL~S~-~s~~itG~~i~vD 235 (242)
T d1ulsa_ 168 ---R---WGIRVNTLAPGFIETRMTAKVPEK--VREKAIAATPLGR--AGKPLEVAYAALFLLSD-ESSFITGQVLFVD 235 (242)
T ss_dssp ---G---GTEEEEEEEECSBCCTTTSSSCHH--HHHHHHHTCTTCS--CBCHHHHHHHHHHHHSG-GGTTCCSCEEEES
T ss_pred ---h---hCcEEEEEeeCcccChhhhcCCHH--HHHHHHhcCCCCC--CCCHHHHHHHHHHHhch-hhCCCCCcEEEEC
Confidence 6 799999999999999998765432 223333 35555 89999999999999966 6789999998654
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=100.00 E-value=1.6e-46 Score=345.26 Aligned_cols=238 Identities=20% Similarity=0.272 Sum_probs=207.2
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
+|+||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++.. ...+.++.||+++++++++++++
T Consensus 3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~-------~~~~~~~~~Dv~~~~~v~~~~~~ 75 (268)
T d2bgka1 3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS-------PDVISFVHCDVTKDEDVRNLVDT 75 (268)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC-------TTTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC-------CCceEEEEccCCCHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999988888743 45688899999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCC----CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 93 ILDNESAIHLLINNAGVMMC----PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~----~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
+.+.+|++|++|||||.... ..+.+.++|++++++|+.++++++|.++|+|.+++.|+||++||..+..+.
T Consensus 76 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~ii~iss~~~~~~~----- 150 (268)
T d2bgka1 76 TIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAG----- 150 (268)
T ss_dssp HHHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCC-----
T ss_pred HHHHcCCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCCCCccccccccccccc-----
Confidence 99999999999999997643 257789999999999999999999999999999989999999999887764
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
......|++||+|+++|++++|.|++
T Consensus 151 --------~~~~~~Y~asKaal~~lt~~lA~el~---------------------------------------------- 176 (268)
T d2bgka1 151 --------EGVSHVYTATKHAVLGLTTSLCTELG---------------------------------------------- 176 (268)
T ss_dssp --------TTSCHHHHHHHHHHHHHHHHHHHHHG----------------------------------------------
T ss_pred --------cccccccchhHHHHHhCHHHHHHHhC----------------------------------------------
Confidence 13345899999999999999999999
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCchhh-HHHH----HHhhhhhccChHHHHHHHHHhhccccccccCceec
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGT-AWLY----QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYY 323 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~ 323 (330)
+ .|||||+|+||+|+|++..+........ +... .+++| +.+|+|+|++++||+++ +++|+||+.|
T Consensus 177 ----~---~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~gr--~~~pedvA~~v~fL~S~-~s~~itGq~i 246 (268)
T d2bgka1 177 ----E---YGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAANLKGT--LLRAEDVADAVAYLAGD-ESKYVSGLNL 246 (268)
T ss_dssp ----G---GTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHTCSSCSC--CCCHHHHHHHHHHHHSG-GGTTCCSCEE
T ss_pred ----h---hCeEEEecCCCCccChHHhhhhcCCHHHHHHHHHhccccCCC--CcCHHHHHHHHHHHhCh-hhCCccCceE
Confidence 6 8999999999999999987765443222 1111 13344 89999999999999966 6789999998
Q ss_pred ccC
Q psy13409 324 AKA 326 (330)
Q Consensus 324 ~~~ 326 (330)
...
T Consensus 247 ~VD 249 (268)
T d2bgka1 247 VID 249 (268)
T ss_dssp EES
T ss_pred EEC
Confidence 654
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.7e-47 Score=346.50 Aligned_cols=233 Identities=24% Similarity=0.341 Sum_probs=202.0
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
.+|+||++|||||++|||+++|+.|+++|++|++++|+.+.++++.+++ .++.++.||++|+++++++++
T Consensus 2 ~rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~----------~~~~~~~~Dvs~~~~v~~~~~ 71 (250)
T d1ydea1 2 TRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL----------PGAVFILCDVTQEDDVKTLVS 71 (250)
T ss_dssp CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC----------TTEEEEECCTTSHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc----------CCCeEEEccCCCHHHHHHHHH
Confidence 3799999999999999999999999999999999999998877766543 357889999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCC---CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 92 EILDNESAIHLLINNAGVMMC---PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~---~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
++.+.+|++|+||||||.... ..+.+.++|++++++|+.+++++++.++|+|+++ +|+||++||.++..+.
T Consensus 72 ~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~-~G~Ii~isS~~~~~~~----- 145 (250)
T d1ydea1 72 ETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS-QGNVINISSLVGAIGQ----- 145 (250)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECCHHHHHCC-----
T ss_pred HHHHhcCCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhC-CCCCcccccccccccc-----
Confidence 999999999999999997643 2678999999999999999999999999999865 4999999999988775
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
+...+|++||+|+++|+++||+|++
T Consensus 146 ---------~~~~~Y~asKaal~~lt~~lA~e~a---------------------------------------------- 170 (250)
T d1ydea1 146 ---------AQAVPYVATKGAVTAMTKALALDES---------------------------------------------- 170 (250)
T ss_dssp ---------TTCHHHHHHHHHHHHHHHHHHHHHG----------------------------------------------
T ss_pred ---------cCcchhHHHHhhHHHHHHHHHHHhc----------------------------------------------
Confidence 7889999999999999999999999
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCc----hhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCcee
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSII----PGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLY 322 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~ 322 (330)
+ .|||||+|+||+|+|++.+...... ...+... .|++| +.+|+|+|++++||+++ ++|+||+.
T Consensus 171 ----~---~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl~R--~g~p~eva~~v~fL~Sd--a~~itG~~ 239 (250)
T d1ydea1 171 ----P---YGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQPLGR--MGQPAEVGAAAVFLASE--ANFCTGIE 239 (250)
T ss_dssp ----G---GTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHHTSTTSS--CBCHHHHHHHHHHHHHH--CTTCCSCE
T ss_pred ----c---cCeEEEEEeeCCCCChhHHHHhhcCCCHHHHHHHHHhcCCCCC--CCCHHHHHHHHHHHhCc--cCCCcCCe
Confidence 6 8999999999999999976543321 1111111 35666 89999999999999964 68999998
Q ss_pred cccC
Q psy13409 323 YAKA 326 (330)
Q Consensus 323 ~~~~ 326 (330)
|.-.
T Consensus 240 i~vD 243 (250)
T d1ydea1 240 LLVT 243 (250)
T ss_dssp EEES
T ss_pred EEEC
Confidence 8644
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=7.9e-47 Score=348.53 Aligned_cols=242 Identities=23% Similarity=0.219 Sum_probs=209.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
+|+||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++.+... ...++.++.||+++++++++++++
T Consensus 1 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~ 77 (274)
T d1xhla_ 1 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGV---PAEKINAVVADVTEASGQDDIINT 77 (274)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC---CGGGEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC---CCcceEEEEeeCCCHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999876421 235799999999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCCC----CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 93 ILDNESAIHLLINNAGVMMCP----RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~----~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
+.+.+|++|++|||||..... .+.+.++|++.+++|+.+++.++++++|+|.++++|+|+++||.++..+.
T Consensus 78 ~~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~ii~~ss~~~~~~~----- 152 (274)
T d1xhla_ 78 TLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQAH----- 152 (274)
T ss_dssp HHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSSSCC-----
T ss_pred HHHHcCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccccccccchhhhhccccC-----
Confidence 999999999999999975432 45678899999999999999999999999998888888888888776664
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
++..+|++||+|+++|+|++|.|++
T Consensus 153 ---------~~~~~Y~asKaal~~ltk~lA~ela---------------------------------------------- 177 (274)
T d1xhla_ 153 ---------SGYPYYACAKAALDQYTRCTAIDLI---------------------------------------------- 177 (274)
T ss_dssp ---------TTSHHHHHHHHHHHHHHHHHHHHHG----------------------------------------------
T ss_pred ---------CCCceehhhhhHHHHHHHHHHHHHh----------------------------------------------
Confidence 7788999999999999999999999
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHH----H-----HHhhhhhccChHHHHHHHHHhhccccccccC
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWL----Y-----QRVGGLFIKSPLQGAQTTLYCALDKKCERET 319 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~----~-----~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~ 319 (330)
+ .|||||+|+||+|+|++...........+.. . .|++| +++|+|+|++++||++.+.++|+|
T Consensus 178 ----~---~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~iPlgR--~g~pediA~~v~fL~S~d~s~~it 248 (274)
T d1xhla_ 178 ----Q---HGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKECIPVGH--CGKPEEIANIIVFLADRNLSSYII 248 (274)
T ss_dssp ----G---GTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTCTTSS--CBCHHHHHHHHHHHHCHHHHTTCC
T ss_pred ----H---hCCceeeeccCCCcCchhhhhcccchhhHHHHHHHHHHHcCCCCCC--CcCHHHHHHHHHHHcCCccccCcc
Confidence 6 8999999999999999887654332222211 1 25566 899999999999999755678999
Q ss_pred ceecccC
Q psy13409 320 GLYYAKA 326 (330)
Q Consensus 320 G~~~~~~ 326 (330)
|+.|.-.
T Consensus 249 G~~i~vD 255 (274)
T d1xhla_ 249 GQSIVAD 255 (274)
T ss_dssp SCEEEES
T ss_pred CcEEEeC
Confidence 9988654
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=2.6e-47 Score=344.94 Aligned_cols=226 Identities=21% Similarity=0.328 Sum_probs=196.0
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
++|+||++|||||++|||+++|+.|+++|++|++++|+.+. ..++..+++|++|+++++++++
T Consensus 3 psl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~-----------------~~~~~~~~~Dv~~~~~v~~~~~ 65 (237)
T d1uzma1 3 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGA-----------------PKGLFGVEVDVTDSDAVDRAFT 65 (237)
T ss_dssp CCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCC-----------------CTTSEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcch-----------------hcCceEEEEecCCHHHHHHHHH
Confidence 57999999999999999999999999999999999998753 3456789999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 92 EILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
++.+.++++|+||||||+..+. .+.+.++|++++++|+.+++.+++.++|+|.+++.|+||++||.++..+.
T Consensus 66 ~~~~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Iv~isS~~~~~~~------ 139 (237)
T d1uzma1 66 AVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGI------ 139 (237)
T ss_dssp HHHHHHSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC----------
T ss_pred HHHHhcCCceEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCCCceEEEcchhhccCC------
Confidence 9999999999999999987543 68899999999999999999999999999999999999999999998775
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
++..+|++||+|+++|+++||.|++
T Consensus 140 --------~~~~~Y~asKaal~~lt~~lA~e~~----------------------------------------------- 164 (237)
T d1uzma1 140 --------GNQANYAASKAGVIGMARSIARELS----------------------------------------------- 164 (237)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHHHHHHG-----------------------------------------------
T ss_pred --------cccHHHHHHHHHHHHHHHHHHhhhh-----------------------------------------------
Confidence 7889999999999999999999999
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+ +|||||+|+||+|+|++.+...+. ..+... .+++| +.+|||+|++++||+++ +++|+||+.|.-.
T Consensus 165 ---~---~gIrVN~I~PG~v~T~~~~~~~~~--~~~~~~~~~pl~R--~~~pedvA~~v~fL~S~-~s~~itG~~i~vd 232 (237)
T d1uzma1 165 ---K---ANVTANVVAPGYIDTDMTRALDER--IQQGALQFIPAKR--VGTPAEVAGVVSFLASE-DASYISGAVIPVD 232 (237)
T ss_dssp ---G---GTEEEEEEEECSBCCHHHHHSCHH--HHHHHGGGCTTCS--CBCHHHHHHHHHHHHSG-GGTTCCSCEEEES
T ss_pred ---c---CCceeeeeeeCcCCChhhhccCHH--HHHHHHhcCCCCC--CcCHHHHHHHHHHHhCc-hhcCCcCCeEEEC
Confidence 6 899999999999999998765432 222222 35555 89999999999999966 6789999998654
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.2e-46 Score=345.26 Aligned_cols=241 Identities=22% Similarity=0.256 Sum_probs=197.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
+|+||++|||||++|||+++|++|+++|++|++++|+.++++++.+++++... ...++.++.+|+++++++++++++
T Consensus 2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~---~~~~~~~~~~Dvt~~~~v~~~~~~ 78 (264)
T d1spxa_ 2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGV---SEQNVNSVVADVTTDAGQDEILST 78 (264)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC---CGGGEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC---CcCceEEEEccCCCHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999876421 235799999999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCC------CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCC-cccCCCC
Q psy13409 93 ILDNESAIHLLINNAGVMMC------PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLA-HTWGDGS 165 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~------~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~-~~~~~~~ 165 (330)
+.+.+|++|+||||||...+ ..+.+.++|++.+++|+.+++++++.++|+|.+++ |++|+++|.. +..+.
T Consensus 79 ~~~~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~-g~iI~~~S~~~~~~~~-- 155 (264)
T d1spxa_ 79 TLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK-GEIVNISSIASGLHAT-- 155 (264)
T ss_dssp HHHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCTTSSSSCC--
T ss_pred HHHHhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCcccccc-CcceeeeeeccccccC--
Confidence 99999999999999998642 24568899999999999999999999999998764 6777777665 44553
Q ss_pred CcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccc
Q psy13409 166 MHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCK 245 (330)
Q Consensus 166 ~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (330)
+...+|++||+|+++|+++||.|++
T Consensus 156 ------------~~~~~Y~asKaal~~lt~~lA~el~------------------------------------------- 180 (264)
T d1spxa_ 156 ------------PDFPYYSIAKAAIDQYTRNTAIDLI------------------------------------------- 180 (264)
T ss_dssp ------------TTSHHHHHHHHHHHHHHHHHHHHHG-------------------------------------------
T ss_pred ------------CCchhhhhhhhhHHHHHHHHHHHhc-------------------------------------------
Confidence 7788999999999999999999999
Q ss_pred ccccCCCCCCCCceeEEEeeCcccccCcccccCCCchh-------hHHHH--HHhhhhhccChHHHHHHHHHhhcccccc
Q psy13409 246 NVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPG-------TAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCE 316 (330)
Q Consensus 246 ~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~-------~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~ 316 (330)
+ .|||||+|+||+|+|++.......... .+... .|++| +++|+|+|++++||++++.++
T Consensus 181 -------~---~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl~R--~g~pedvA~~v~fL~S~~~s~ 248 (264)
T d1spxa_ 181 -------Q---HGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECVPAGV--MGQPQDIAEVIAFLADRKTSS 248 (264)
T ss_dssp -------G---GTCEEEEEEECCBCCCC--------------HHHHHHHHHHCTTSS--CBCHHHHHHHHHHHHCHHHHT
T ss_pred -------c---cCeEEEEEeeCCCCCcchhccCCcHHHHHHHHHHHHHHHhcCCCCC--CcCHHHHHHHHHHHhCCcccC
Confidence 6 899999999999999987655322111 11112 34555 999999999999999876688
Q ss_pred ccCceecccC
Q psy13409 317 RETGLYYAKA 326 (330)
Q Consensus 317 ~~~G~~~~~~ 326 (330)
|+||+.|.-.
T Consensus 249 ~itG~~i~vD 258 (264)
T d1spxa_ 249 YIIGHQLVVD 258 (264)
T ss_dssp TCCSCEEEES
T ss_pred CccCceEEeC
Confidence 9999988654
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=1.4e-46 Score=346.42 Aligned_cols=242 Identities=25% Similarity=0.256 Sum_probs=205.3
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
++|+||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++.+... .+.++.++.||++++++++++++
T Consensus 1 prL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~---~~~~~~~~~~Dvs~~~~v~~~~~ 77 (272)
T d1xkqa_ 1 PRFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGV---SEKQVNSVVADVTTEDGQDQIIN 77 (272)
T ss_dssp CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTC---CGGGEEEEECCTTSHHHHHHHHH
T ss_pred CCCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC---CCCceEEEEccCCCHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999998876421 24579999999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCCC------CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcC-CCcccCCC
Q psy13409 92 EILDNESAIHLLINNAGVMMCP------RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSS-LAHTWGDG 164 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~------~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS-~~~~~~~~ 164 (330)
++.+.+|++|+||||||...+. .+.+.++|++++++|+.++++++++++|+|.+++ |++|+++| .++..+.
T Consensus 78 ~~~~~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~-g~iI~~~Ss~a~~~~~- 155 (272)
T d1xkqa_ 78 STLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK-GEIVNVSSIVAGPQAQ- 155 (272)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGSSSCC-
T ss_pred HHHHHhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccC-CccccccchhccccCC-
Confidence 9999999999999999987542 3567778999999999999999999999998765 66666666 4556664
Q ss_pred CCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccc
Q psy13409 165 SMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYC 244 (330)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
+...+|++||+|+++|+++||.|++
T Consensus 156 -------------~~~~~Y~asKaal~~ltk~lA~el~------------------------------------------ 180 (272)
T d1xkqa_ 156 -------------PDFLYYAIAKAALDQYTRSTAIDLA------------------------------------------ 180 (272)
T ss_dssp -------------CSSHHHHHHHHHHHHHHHHHHHHHH------------------------------------------
T ss_pred -------------CCcchhhhHHHHHHHHHHHHHHHhc------------------------------------------
Confidence 7889999999999999999999999
Q ss_pred cccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH---------HHhhhhhccChHHHHHHHHHhhccccc
Q psy13409 245 KNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY---------QRVGGLFIKSPLQGAQTTLYCALDKKC 315 (330)
Q Consensus 245 ~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~e~a~~~~~l~~~~~~ 315 (330)
+ .|||||+|+||+|+|++...........+... .|++| +++|+|+|++++||++++.+
T Consensus 181 --------~---~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~PlgR--~g~pediA~~v~fL~S~~as 247 (272)
T d1xkqa_ 181 --------K---FGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKECIPIGA--AGKPEHIANIILFLADRNLS 247 (272)
T ss_dssp --------T---TTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTCTTSS--CBCHHHHHHHHHHHHCHHHH
T ss_pred --------c---cCeEEEEEeeCCCcchhhhccCCchHHHHHHHHHHHHHhcCCCCCC--CcCHHHHHHHHHHHhCcchh
Confidence 6 89999999999999999876654322221111 24555 89999999999999976555
Q ss_pred cccCceecccC
Q psy13409 316 ERETGLYYAKA 326 (330)
Q Consensus 316 ~~~~G~~~~~~ 326 (330)
.|+||+.|.-.
T Consensus 248 ~~iTG~~i~vD 258 (272)
T d1xkqa_ 248 FYILGQSIVAD 258 (272)
T ss_dssp TTCCSCEEEES
T ss_pred CCccCeEEEeC
Confidence 78999988654
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=8.9e-47 Score=343.57 Aligned_cols=232 Identities=22% Similarity=0.251 Sum_probs=199.7
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
+|+||++|||||++|||+++|+.|+++|++|++++|+++..+ ..+++ ...+++||+++++++++++++
T Consensus 2 ~l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~-~~~~~-----------~~~~~~~Dv~~~~~v~~~~~~ 69 (248)
T d2d1ya1 2 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKE-VAEAI-----------GGAFFQVDLEDERERVRFVEE 69 (248)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHH-HHHHH-----------TCEEEECCTTCHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHc-----------CCeEEEEeCCCHHHHHHHHHH
Confidence 589999999999999999999999999999999999987543 33322 235689999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 93 ILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
+.+.+|+||+||||||...+ ..+.+.++|++.+++|+.++++++|+++|+|++++.|+||++||.++..+.
T Consensus 70 ~~~~~G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~~~~~------- 142 (248)
T d2d1ya1 70 AAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAE------- 142 (248)
T ss_dssp HHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSBC-------
T ss_pred HHHhcCCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccccccccccccccccccc-------
Confidence 99999999999999998754 378899999999999999999999999999999989999999999988775
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
+...+|++||+|+++|+++||+|++
T Consensus 143 -------~~~~~Y~asKaal~~ltk~lA~el~------------------------------------------------ 167 (248)
T d2d1ya1 143 -------QENAAYNASKGGLVNLTRSLALDLA------------------------------------------------ 167 (248)
T ss_dssp -------TTBHHHHHHHHHHHHHHHHHHHHHG------------------------------------------------
T ss_pred -------cccchhHHHHHHHHHHHHHHHHHhh------------------------------------------------
Confidence 7889999999999999999999999
Q ss_pred CCCCCCCceeEEEeeCcccccCcccccCCC----chhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCceecc
Q psy13409 251 PPGANITNVNTYAVHPGVVDTELSRHFDSI----IPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYA 324 (330)
Q Consensus 251 ~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~ 324 (330)
+ .|||||+|+||+|+|++..+.... ....+... .+++| +.+|+|+|++++||+++ .++|+||+.|.
T Consensus 168 --~---~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~pl~R--~~~pedia~~v~fL~S~-~s~~itG~~i~ 239 (248)
T d2d1ya1 168 --P---LRIRVNAVAPGAIATEAVLEAIALSPDPERTRRDWEDLHALRR--LGKPEEVAEAVLFLASE-KASFITGAILP 239 (248)
T ss_dssp --G---GTEEEEEEEECSBCCHHHHHHHC--------CHHHHTTSTTSS--CBCHHHHHHHHHHHHSG-GGTTCCSCEEE
T ss_pred --h---hCcEEEEEeeCCCCCchHHHHhhcCCCHHHHHHHHHhcCCCCC--CcCHHHHHHHHHHHhCc-hhcCCCCcEEE
Confidence 6 899999999999999987644221 11122222 35555 89999999999999965 78899999886
Q ss_pred cC
Q psy13409 325 KA 326 (330)
Q Consensus 325 ~~ 326 (330)
-.
T Consensus 240 vD 241 (248)
T d2d1ya1 240 VD 241 (248)
T ss_dssp ES
T ss_pred cC
Confidence 53
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=100.00 E-value=1.1e-46 Score=343.98 Aligned_cols=236 Identities=20% Similarity=0.222 Sum_probs=205.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
+|+||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++ +.+..++.+|+++++++++++++
T Consensus 3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~---------~~~~~~~~~Dv~~~~~~~~~~~~ 73 (253)
T d1hxha_ 3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL---------GERSMFVRHDVSSEADWTLVMAA 73 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH---------CTTEEEECCCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---------CCCeEEEEeecCCHHHHHHHHHH
Confidence 699999999999999999999999999999999999999888877765 45678899999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 93 ILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
+.+.+|++|+||||||...+ ..+.+.++|++.+++|+.+++++++.++|+|+++ +|+||++||.++..+.
T Consensus 74 ~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~G~Iv~isS~~~~~~~------- 145 (253)
T d1hxha_ 74 VQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKET-GGSIINMASVSSWLPI------- 145 (253)
T ss_dssp HHHHHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT-CEEEEEECCGGGTSCC-------
T ss_pred HHHHhCCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-CCceecccchhhhcCc-------
Confidence 99999999999999998754 3788999999999999999999999999999765 5999999999988775
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
+...+|++||+|+.+|++++|.|+++.
T Consensus 146 -------~~~~~Y~asKaal~~lt~~lA~e~~~~---------------------------------------------- 172 (253)
T d1hxha_ 146 -------EQYAGYSASKAAVSALTRAAALSCRKQ---------------------------------------------- 172 (253)
T ss_dssp -------TTBHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------------------
T ss_pred -------cccccccchhHHHHHHHHHHHHHHhhc----------------------------------------------
Confidence 788999999999999999999999831
Q ss_pred CCCCCCCceeEEEeeCcccccCcccccCCCchhhHHH-----HHHhhhhhccChHHHHHHHHHhhccccccccCceeccc
Q psy13409 251 PPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWL-----YQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAK 325 (330)
Q Consensus 251 ~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~ 325 (330)
+ .+||||+|+||+|+|++.+.........+.. ..+++| +.+|+|+|++++||+++ +++|+||+.|.-
T Consensus 173 --g---~~IrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~gr--~~~pedvA~~v~fL~S~-~s~~itG~~i~V 244 (253)
T d1hxha_ 173 --G---YAIRVNSIHPDGIYTPMMQASLPKGVSKEMVLHDPKLNRAGR--AYMPERIAQLVLFLASD-ESSVMSGSELHA 244 (253)
T ss_dssp --T---CCEEEEEEEESEECCHHHHHHSCTTCCHHHHBCBTTTBTTCC--EECHHHHHHHHHHHHSG-GGTTCCSCEEEE
T ss_pred --C---CCEEEEEEeECCCcCHhHHhhCcchhhHHHHHhCccccccCC--CCCHHHHHHHHHHHhCh-hhCCCcCcEEEE
Confidence 3 4699999999999999876554332222222 134555 88999999999999965 678999998865
Q ss_pred C
Q psy13409 326 A 326 (330)
Q Consensus 326 ~ 326 (330)
.
T Consensus 245 D 245 (253)
T d1hxha_ 245 D 245 (253)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=100.00 E-value=4.4e-46 Score=340.00 Aligned_cols=234 Identities=26% Similarity=0.282 Sum_probs=205.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
|++|||||++|||+++|+.|+++|++|++++|+.++++++.+++++. +.++.++.||++++++++++++++.+.
T Consensus 2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~------g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 75 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQA------GGHAVAVKVDVSDRDQVFAAVEQARKT 75 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999998763 678999999999999999999999999
Q ss_pred CCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCCccccccc
Q psy13409 97 ESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSMHFEDINL 173 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~~~~~~~~ 173 (330)
+|++|+||||||+.... .+.+.++|++++++|+.++++++++++|+|.+++ +++||++||.++..+.
T Consensus 76 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~---------- 145 (255)
T d1gega_ 76 LGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGN---------- 145 (255)
T ss_dssp TTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC----------
T ss_pred hCCccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhcccC----------
Confidence 99999999999987543 6889999999999999999999999999887775 5789999999987775
Q ss_pred ccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCC
Q psy13409 174 EKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPG 253 (330)
Q Consensus 174 ~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (330)
+..++|++||+|+++|+++||.|++ +
T Consensus 146 ----~~~~~Y~asKaal~~ltk~lA~el~--------------------------------------------------~ 171 (255)
T d1gega_ 146 ----PELAVYSSSKFAVRGLTQTAARDLA--------------------------------------------------P 171 (255)
T ss_dssp ----TTBHHHHHHHHHHHHHHHHHHHHHG--------------------------------------------------G
T ss_pred ----cccccchhCHHHHHhhHHHHHHHhh--------------------------------------------------h
Confidence 7889999999999999999999999 6
Q ss_pred CCCCceeEEEeeCcccccCcccccCCC---------chhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCcee
Q psy13409 254 ANITNVNTYAVHPGVVDTELSRHFDSI---------IPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLY 322 (330)
Q Consensus 254 ~~~~~i~v~~v~pG~v~t~~~~~~~~~---------~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~ 322 (330)
.|||||+|+||+|+|+++...... ....+... .|++| +.+|+|+|++++||+++ +++|+||+.
T Consensus 172 ---~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~R--~~~peevA~~v~fL~S~-~a~~itG~~ 245 (255)
T d1gega_ 172 ---LGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRITLGR--LSEPEDVAACVSYLASP-DSDYMTGQS 245 (255)
T ss_dssp ---GTEEEEEEEECSBSSHHHHHHHHHHHHHHTCCTTHHHHHHHTTCTTCS--CBCHHHHHHHHHHHHSG-GGTTCCSCE
T ss_pred ---hCcEEEEEecCcccChHHhhhhhhhHhhhcccchhHHHHHHhcCCCCC--CcCHHHHHHHHHHHhCc-hhCCccCcE
Confidence 899999999999999987654321 11122222 34555 89999999999999965 688999998
Q ss_pred cccC
Q psy13409 323 YAKA 326 (330)
Q Consensus 323 ~~~~ 326 (330)
|.-.
T Consensus 246 i~vD 249 (255)
T d1gega_ 246 LLID 249 (255)
T ss_dssp EEES
T ss_pred EEec
Confidence 8644
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=100.00 E-value=2.9e-46 Score=342.09 Aligned_cols=247 Identities=23% Similarity=0.246 Sum_probs=208.4
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
++++|+||++|||||++|||+++|+.|+++|++|++++|+.+++++..+++.+.. +.++.++.||++++++++++
T Consensus 3 ~~m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~-----g~~~~~~~~Dv~~~~~v~~~ 77 (260)
T d1h5qa_ 3 FTISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEF-----GVKTKAYQCDVSNTDIVTKT 77 (260)
T ss_dssp EEECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHH-----TCCEEEEECCTTCHHHHHHH
T ss_pred CcccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh-----CCceEEEEccCCCHHHHHHH
Confidence 4568999999999999999999999999999999999999999998888886653 67899999999999999999
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcCCCcccCCCCC
Q psy13409 90 AQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSSLAHTWGDGSM 166 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS~~~~~~~~~~ 166 (330)
++++.+.+|++|+||||||..... .+.+.++|++.+++|+.+++++++.++|.|.+++ .++|++++|........
T Consensus 78 ~~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~~~~~-- 155 (260)
T d1h5qa_ 78 IQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQ-- 155 (260)
T ss_dssp HHHHHHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCE--
T ss_pred HHHHHHHhCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeeccccccccc--
Confidence 999999999999999999987543 7889999999999999999999999999987664 56777777765443320
Q ss_pred cccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccc
Q psy13409 167 HFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKN 246 (330)
Q Consensus 167 ~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (330)
....+.++..+|++||+|+++|+|++|.|++
T Consensus 156 -----~~~~~~~~~~~Y~asKaal~~lt~~lA~el~-------------------------------------------- 186 (260)
T d1h5qa_ 156 -----SSLNGSLTQVFYNSSKAACSNLVKGLAAEWA-------------------------------------------- 186 (260)
T ss_dssp -----EETTEECSCHHHHHHHHHHHHHHHHHHHHHG--------------------------------------------
T ss_pred -----cccccCccccchhhhhhhHHHHHHHHHHHhc--------------------------------------------
Confidence 0011225678999999999999999999999
Q ss_pred cccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCceecc
Q psy13409 247 VLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYA 324 (330)
Q Consensus 247 ~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~ 324 (330)
+ .|||||+|+||+|+|++.....+. ..+... .|++| +.+|+|+|++++||+++ .++|+||+.|.
T Consensus 187 ------~---~gIrvN~I~PG~i~T~~~~~~~~~--~~~~~~~~~pl~R--~g~pedvA~~v~fL~S~-~s~~itG~~i~ 252 (260)
T d1h5qa_ 187 ------S---AGIRVNALSPGYVNTDQTAHMDKK--IRDHQASNIPLNR--FAQPEEMTGQAILLLSD-HATYMTGGEYF 252 (260)
T ss_dssp ------G---GTEEEEEEEECSBCCGGGGGSCHH--HHHHHHHTCTTSS--CBCGGGGHHHHHHHHSG-GGTTCCSCEEE
T ss_pred ------h---hCeEEeecCCCcccCcchhccCHH--HHHHHHhcCCCCC--CcCHHHHHHHHHHHhcc-hhCCCcCceEE
Confidence 6 899999999999999998776432 223333 35565 99999999999999965 67899999886
Q ss_pred cC
Q psy13409 325 KA 326 (330)
Q Consensus 325 ~~ 326 (330)
-.
T Consensus 253 VD 254 (260)
T d1h5qa_ 253 ID 254 (260)
T ss_dssp EC
T ss_pred EC
Confidence 54
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.2e-46 Score=336.30 Aligned_cols=233 Identities=21% Similarity=0.287 Sum_probs=201.6
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
|++.|+||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++ ..+..+.+|++|+++++++
T Consensus 1 M~~~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~----------~~~~~~~~Dv~d~~~v~~~ 70 (244)
T d1pr9a_ 1 MELFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC----------PGIEPVCVDLGDWEATERA 70 (244)
T ss_dssp CCCCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS----------TTCEEEECCTTCHHHHHHH
T ss_pred CCCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc----------CCCeEEEEeCCCHHHHHHH
Confidence 456799999999999999999999999999999999999999887776553 2467889999999988766
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhh-CCCeEEEEcCCCcccCCCCC
Q psy13409 90 AQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKS-APARIINLSSLAHTWGDGSM 166 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~-~~g~IV~iSS~~~~~~~~~~ 166 (330)
+ +.++++|+||||||..... .+.+.++|+..+++|+.+++++++.++|.|.++ +.|+||++||.++..+.
T Consensus 71 ~----~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~--- 143 (244)
T d1pr9a_ 71 L----GSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAV--- 143 (244)
T ss_dssp H----TTCCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC---
T ss_pred H----HHhCCceEEEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecccccccccc---
Confidence 5 5679999999999987643 688999999999999999999999999976554 57999999999987774
Q ss_pred cccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccc
Q psy13409 167 HFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKN 246 (330)
Q Consensus 167 ~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (330)
+...+|++||+|+++|+++||+|++
T Consensus 144 -----------~~~~~Y~asKaal~~lt~~lA~el~-------------------------------------------- 168 (244)
T d1pr9a_ 144 -----------TNHSVYCSTKGALDMLTKVMALELG-------------------------------------------- 168 (244)
T ss_dssp -----------TTBHHHHHHHHHHHHHHHHHHHHHG--------------------------------------------
T ss_pred -----------cchhhhhhhHHHHHHHHHHHHHHhC--------------------------------------------
Confidence 7889999999999999999999999
Q ss_pred cccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHH--HhhhhhccChHHHHHHHHHhhccccccccCceecc
Q psy13409 247 VLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQ--RVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYA 324 (330)
Q Consensus 247 ~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~ 324 (330)
+ .|||||+|+||+|+|++.+.........+.... |++| +.+|+|+|++++||+++ .++|+||+.|.
T Consensus 169 ------~---~gIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~pl~R--~~~peevA~~v~fL~S~-~a~~itG~~i~ 236 (244)
T d1pr9a_ 169 ------P---HKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIPLGK--FAEVEHVVNAILFLLSD-RSGMTTGSTLP 236 (244)
T ss_dssp ------G---GTEEEEEEEECCBCSHHHHTTSCSHHHHHHHHTTCTTCS--CBCHHHHHHHHHHHHSG-GGTTCCSCEEE
T ss_pred ------C---CcEEEEEEeeCcCcChHHhhhccChHHHHHHHhcCCCCC--CcCHHHHHHHHHHHhCc-hhCCcCCcEEE
Confidence 6 799999999999999998877665544444443 4555 99999999999999966 67899999886
Q ss_pred cC
Q psy13409 325 KA 326 (330)
Q Consensus 325 ~~ 326 (330)
-.
T Consensus 237 vD 238 (244)
T d1pr9a_ 237 VE 238 (244)
T ss_dssp ES
T ss_pred EC
Confidence 43
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=100.00 E-value=2.4e-45 Score=335.82 Aligned_cols=239 Identities=26% Similarity=0.274 Sum_probs=205.5
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
.+|+||+||||||++|||+++|++|+++|++|++++|++++++++.+++++. +..+.++.||++++++++++++
T Consensus 2 f~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~------~~~~~~~~~D~s~~~~~~~~~~ 75 (258)
T d1ae1a_ 2 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREK------GLNVEGSVCDLLSRTERDKLMQ 75 (258)
T ss_dssp CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCCceEEEeecCCHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999888773 6788999999999999999999
Q ss_pred HHHhcC-CCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 92 EILDNE-SAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 92 ~i~~~~-g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
++.+.+ +.+|++|||||..... .+++.++|++++++|+.+++++++.++|.|.+++.|+||++||.++..+.
T Consensus 76 ~~~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~g~ii~isS~~~~~~~----- 150 (258)
T d1ae1a_ 76 TVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSAL----- 150 (258)
T ss_dssp HHHHHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSCC-----
T ss_pred HHHHHhCCCcEEEeccccccccCccccCCHHHHhhhhhhcccccccccccccccccccccccccccccccccccc-----
Confidence 999988 6899999999987643 78899999999999999999999999999999999999999999988775
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
+...+|+++|+|+++|+++||+|++
T Consensus 151 ---------~~~~~Y~~sK~al~~lt~~lA~el~---------------------------------------------- 175 (258)
T d1ae1a_ 151 ---------PSVSLYSASKGAINQMTKSLACEWA---------------------------------------------- 175 (258)
T ss_dssp ---------TTCHHHHHHHHHHHHHHHHHHHHHG----------------------------------------------
T ss_pred ---------ccchhHHHHHHHHHHHHHHHHHhcC----------------------------------------------
Confidence 7889999999999999999999999
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCc----hhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCcee
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSII----PGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLY 322 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~ 322 (330)
+ .|||||+|+||+|+|++........ ...+.+. .|++| +.+|+|+|++++||+++ +++|+||+.
T Consensus 176 ----~---~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~plgR--~~~pediA~~v~fL~S~-~s~~itG~~ 245 (258)
T d1ae1a_ 176 ----K---DNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTPMGR--AGKPQEVSALIAFLCFP-AASYITGQI 245 (258)
T ss_dssp ----G---GTEEEEEEEECSBC-------------CHHHHHHHHHHSTTCS--CBCHHHHHHHHHHHHSG-GGTTCCSCE
T ss_pred ----c---CcEEEEEEeeCcccCcchhhhhhhhhhhHHHHHHHHhcCCCCC--CcCHHHHHHHHHHHhCh-hhCCCcCcE
Confidence 6 8999999999999999986654432 2222222 34555 89999999999999966 678999998
Q ss_pred cccC
Q psy13409 323 YAKA 326 (330)
Q Consensus 323 ~~~~ 326 (330)
|.-.
T Consensus 246 i~vD 249 (258)
T d1ae1a_ 246 IWAD 249 (258)
T ss_dssp EEES
T ss_pred EEeC
Confidence 7543
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.6e-45 Score=334.09 Aligned_cols=231 Identities=20% Similarity=0.276 Sum_probs=199.8
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
++|+||++|||||++|||+++|++|+++|++|++++|+.++++++.+++ ..+.++.||+++++++++++
T Consensus 1 mdl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~----------~~~~~~~~Dv~~~~~v~~~~- 69 (242)
T d1cyda_ 1 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC----------PGIEPVCVDLGDWDATEKAL- 69 (242)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS----------TTCEEEECCTTCHHHHHHHH-
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc----------CCCeEEEEeCCCHHHHHHHH-
Confidence 4699999999999999999999999999999999999998887766553 24678899999999887654
Q ss_pred HHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhh-CCCeEEEEcCCCcccCCCCCcc
Q psy13409 92 EILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKS-APARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~-~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
+.+|++|+||||||+... ..+.+.++|+..+++|+.+++++++.++|.|.++ .+|+||++||.++..+.
T Consensus 70 ---~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~----- 141 (242)
T d1cyda_ 70 ---GGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTF----- 141 (242)
T ss_dssp ---TTCCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC-----
T ss_pred ---HHcCCCeEEEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccccC-----
Confidence 567999999999998654 3788999999999999999999999999987655 46899999999887774
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
+...+|+++|+|+++|+|+||.|++
T Consensus 142 ---------~~~~~Y~asKaal~~lt~~lA~e~~---------------------------------------------- 166 (242)
T d1cyda_ 142 ---------PNLITYSSTKGAMTMLTKAMAMELG---------------------------------------------- 166 (242)
T ss_dssp ---------TTBHHHHHHHHHHHHHHHHHHHHHG----------------------------------------------
T ss_pred ---------CccccccchHHHHHHHHHHHHHHhC----------------------------------------------
Confidence 7889999999999999999999999
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+ .|||||+|+||+|+|++.+.....+...+... .|++| +.+|+|+|++++||+++ .++|+||+.|.-.
T Consensus 167 ----~---~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~pl~R--~~~peeva~~v~fL~S~-~s~~itG~~i~vD 236 (242)
T d1cyda_ 167 ----P---HKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHPLRK--FAEVEDVVNSILFLLSD-RSASTSGGGILVD 236 (242)
T ss_dssp ----G---GTEEEEEEEECCBTTHHHHHHTCCHHHHHHHHHHSTTSS--CBCHHHHHHHHHHHHSG-GGTTCCSSEEEES
T ss_pred ----c---cCeecccCCCCCccCHHHHhhcCCHHHHHHHHhcCCCCC--CcCHHHHHHHHHHHhCc-hhcCcCCceEEeC
Confidence 6 89999999999999999887765554444444 34555 99999999999999965 6889999988643
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6e-45 Score=332.99 Aligned_cols=242 Identities=23% Similarity=0.274 Sum_probs=207.6
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
|.+|+||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++++.. .+.++.++.||+++++++++++
T Consensus 5 M~~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~----~~~~~~~~~~Dls~~~~v~~~v 80 (257)
T d1xg5a_ 5 MERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAG----YPGTLIPYRCDLSNEEDILSMF 80 (257)
T ss_dssp CGGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT----CSSEEEEEECCTTCHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC----CCceEEEEEccCCCHHHHHHHH
Confidence 345999999999999999999999999999999999999999999999998753 3568999999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC--CCeEEEEcCCCcccCCCCC
Q psy13409 91 QEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA--PARIINLSSLAHTWGDGSM 166 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~--~g~IV~iSS~~~~~~~~~~ 166 (330)
+++.+.+|+||+||||||...+ ..+.+.++|+..+++|+.+++++++.++|.|.+++ +|+||++||.++..+.
T Consensus 81 ~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~--- 157 (257)
T d1xg5a_ 81 SAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVL--- 157 (257)
T ss_dssp HHHHHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCC---
T ss_pred HHHHHhcCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcCCC---
Confidence 9999999999999999998764 37899999999999999999999999999998765 6999999999886553
Q ss_pred cccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccc
Q psy13409 167 HFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKN 246 (330)
Q Consensus 167 ~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (330)
+......|++||+|+.+|+++||.|+...
T Consensus 158 ---------p~~~~~~Y~~sKaal~~ltr~la~el~~~------------------------------------------ 186 (257)
T d1xg5a_ 158 ---------PLSVTHFYSATKYAVTALTEGLRQELREA------------------------------------------ 186 (257)
T ss_dssp ---------SCGGGHHHHHHHHHHHHHHHHHHHHHHHT------------------------------------------
T ss_pred ---------CCcccHHHHHHHHHHHhCHHHHHHHHHhC------------------------------------------
Confidence 12566789999999999999999998310
Q ss_pred cccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCcee
Q psy13409 247 VLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLY 322 (330)
Q Consensus 247 ~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~ 322 (330)
+ .|||||+|+||+++|++................++++ +.+|+|+|++++||+++ .++++||+.
T Consensus 187 ------~---~~I~vn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~r--~~~pedvA~~v~fL~s~-~a~~itG~i 250 (257)
T d1xg5a_ 187 ------Q---THIRATCISPGVVETQFAFKLHDKDPEKAAATYEQMK--CLKPEDVAEAVIYVLST-PAHIQIGDI 250 (257)
T ss_dssp ------T---CCCEEEEEEESCBCSSHHHHHTTTCHHHHHHHHC-----CBCHHHHHHHHHHHHHS-CTTEEEEEE
T ss_pred ------C---CCEEEEEEeCCCCCChhhhhcChhhHHHHHhcCCCCC--CcCHHHHHHHHHHHhCC-hhcCeECCE
Confidence 5 7999999999999999987665443322222345555 89999999999999977 468999985
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.2e-45 Score=340.12 Aligned_cols=245 Identities=22% Similarity=0.286 Sum_probs=210.2
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
+..+|+||++|||||++|||+++|+.|+++|++|++++|+.+++++..++++..... ..+.++.++.||++++++++++
T Consensus 6 ~~g~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~-~~~~~~~~~~~Dvs~~~~v~~~ 84 (297)
T d1yxma1 6 APGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPP-TKQARVIPIQCNIRNEEEVNNL 84 (297)
T ss_dssp CTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCT-TCCCCEEEEECCTTCHHHHHHH
T ss_pred CCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhcc-ccCceEEEEeccCCCHHHHHHH
Confidence 445799999999999999999999999999999999999999999999998765322 1367899999999999999999
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCC--CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCc
Q psy13409 90 AQEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~--~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~ 167 (330)
++++.+.+|++|+||||||.... ..+.+.++|++.+++|+.++++++++++|.|.+++.++||++||.. ..+.
T Consensus 85 ~~~~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~Ii~~ss~~-~~~~---- 159 (297)
T d1yxma1 85 VKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPT-KAGF---- 159 (297)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCC-TTCC----
T ss_pred HHHHHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhccccccccccccccc-cccc----
Confidence 99999999999999999998653 3788999999999999999999999999999999889999987643 3332
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
+....|++||+|+++|++++|.|++
T Consensus 160 ----------~~~~~Y~asKaal~~ltk~lA~el~--------------------------------------------- 184 (297)
T d1yxma1 160 ----------PLAVHSGAARAGVYNLTKSLALEWA--------------------------------------------- 184 (297)
T ss_dssp ----------TTCHHHHHHHHHHHHHHHHHHHHTG---------------------------------------------
T ss_pred ----------cccccchhHHHHHHHHHHHHHHHhc---------------------------------------------
Confidence 6788999999999999999999999
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCCC--chhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCceec
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSI--IPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYY 323 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~ 323 (330)
+ .|||||+|+||+|+|++....... ....+... .+++| +++|+|+|++++||+++ .++|+||+.|
T Consensus 185 -----~---~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~plgR--~g~pedvA~~v~fL~Sd-~s~~iTG~~i 253 (297)
T d1yxma1 185 -----C---SGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKIPAKR--IGVPEEVSSVVCFLLSP-AASFITGQSV 253 (297)
T ss_dssp -----G---GTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGGSTTSS--CBCTHHHHHHHHHHHSG-GGTTCCSCEE
T ss_pred -----c---cCceEEEeeeCcCcCcchhhhccccCHHHHHHHHhcCCCCC--CcCHHHHHHHHHHHhCc-hhcCcCCcEE
Confidence 6 899999999999999987654332 11112222 35565 99999999999999976 6889999988
Q ss_pred ccC
Q psy13409 324 AKA 326 (330)
Q Consensus 324 ~~~ 326 (330)
.-.
T Consensus 254 ~VD 256 (297)
T d1yxma1 254 DVD 256 (297)
T ss_dssp EES
T ss_pred EeC
Confidence 654
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=100.00 E-value=2.7e-45 Score=338.55 Aligned_cols=235 Identities=21% Similarity=0.258 Sum_probs=200.2
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
|+|+||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++ +.++.++.+|++++++++++++
T Consensus 1 M~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~---------~~~~~~~~~Dv~~~~~~~~~~~ 71 (276)
T d1bdba_ 1 MKLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDH---------GDNVLGIVGDVRSLEDQKQAAS 71 (276)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---------GGGEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc---------CCCeeEEecccccHHHHHHHHH
Confidence 4699999999999999999999999999999999999998887766554 4578999999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCCC-------CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCC
Q psy13409 92 EILDNESAIHLLINNAGVMMCP-------RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDG 164 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~-------~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~ 164 (330)
++.+.++++|++|||||+.... .+.+.+.|++++++|+.++++++|.++|.|++++ |+||+++|..+..+.
T Consensus 72 ~~~~~~g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~-g~iI~i~S~~~~~~~- 149 (276)
T d1bdba_ 72 RCVARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR-GNVIFTISNAGFYPN- 149 (276)
T ss_dssp HHHHHHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGTSTT-
T ss_pred HHHHHhCCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC-CCceeeeechhccCC-
Confidence 9999999999999999976432 2334456999999999999999999999998764 899999999888775
Q ss_pred CCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccc
Q psy13409 165 SMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYC 244 (330)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
+...+|++||+|+++|+|+||.|++
T Consensus 150 -------------~~~~~Y~asKaal~~ltr~lA~ela------------------------------------------ 174 (276)
T d1bdba_ 150 -------------GGGPLYTAAKHAIVGLVRELAFELA------------------------------------------ 174 (276)
T ss_dssp -------------SSCHHHHHHHHHHHHHHHHHHHHHT------------------------------------------
T ss_pred -------------CCCchHHHHHHHHHHHHHHHHHHhh------------------------------------------
Confidence 7788999999999999999999998
Q ss_pred cccccCCCCCCCCceeEEEeeCcccccCcccccCCC--------chhhHHHH--HHhhhhhccChHHHHHHHHHhhcccc
Q psy13409 245 KNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSI--------IPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKK 314 (330)
Q Consensus 245 ~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~--------~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~ 314 (330)
++||||+|+||+|+|++....... .+..+... .|++| +.+|+|+|++++||+++++
T Consensus 175 ------------~~IrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlgR--~g~peeva~~v~fL~S~~~ 240 (276)
T d1bdba_ 175 ------------PYVRVNGVGSGGINSDLRGPSSLGMGSKAISTVPLADMLKSVLPIGR--MPEVEEYTGAYVFFATRGD 240 (276)
T ss_dssp ------------TTCEEEEEEECCCCSCCCCCGGGC---------CHHHHHTTTCTTSS--CCCGGGGSHHHHHHHCHHH
T ss_pred ------------cceEEcccCCCCEecCcCCccchhhhhhccCcHHHHHHHHhcCCCCC--CcCHHHHHHHHHHHcCCcc
Confidence 459999999999999986433211 11222222 35566 9999999999999997667
Q ss_pred ccccCceecccC
Q psy13409 315 CERETGLYYAKA 326 (330)
Q Consensus 315 ~~~~~G~~~~~~ 326 (330)
++|+||+.|.-.
T Consensus 241 a~~itG~~i~VD 252 (276)
T d1bdba_ 241 AAPATGALLNYD 252 (276)
T ss_dssp HTTCSSCEEEES
T ss_pred cCCeeCcEEEEC
Confidence 889999998654
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-44 Score=329.80 Aligned_cols=232 Identities=25% Similarity=0.300 Sum_probs=200.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
++||++|||||++|||+++|+.|+++|++|++++|+.+++++..+++.+.. .+.++.++.||++++++++++++++
T Consensus 1 i~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~----~~~~~~~~~~Dv~~~~~v~~~~~~~ 76 (254)
T d2gdza1 1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQF----EPQKTLFIQCDVADQQQLRDTFRKV 76 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTS----CGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhc----CCCcEEEEEeecCCHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999999888886543 3568999999999999999999999
Q ss_pred HhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC---CCeEEEEcCCCcccCCCCCcccc
Q psy13409 94 LDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA---PARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~---~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
.+.+|++|+||||||.. ..++|++++++|+.+++.+++.++|+|.+++ +|+||++||.++..+.
T Consensus 77 ~~~~G~iDilVnnAg~~------~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~~~~------- 143 (254)
T d2gdza1 77 VDHFGRLDILVNNAGVN------NEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPV------- 143 (254)
T ss_dssp HHHHSCCCEEEECCCCC------CSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCC-------
T ss_pred HHHcCCcCeeccccccc------ccccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhccCC-------
Confidence 99999999999999986 3467899999999999999999999998764 4789999999998875
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHH--HHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTE--LAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~--la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
+...+|++||+|+.+|+|+ ||.|++
T Consensus 144 -------~~~~~Y~asKaal~~ltrs~ala~e~~---------------------------------------------- 170 (254)
T d2gdza1 144 -------AQQPVYCASKHGIVGFTRSAALAANLM---------------------------------------------- 170 (254)
T ss_dssp -------TTCHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------------------
T ss_pred -------CCccchHHHHHHHHHHHHHHHHHHHhc----------------------------------------------
Confidence 7889999999999999997 688998
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCc------hhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCcee
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSII------PGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLY 322 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~ 322 (330)
+ +|||||+|+||+|+|++.+...... ...+......+..++.+|+|+|++++||++++ ++||+.
T Consensus 171 ----~---~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~fL~s~~---~itG~~ 240 (254)
T d2gdza1 171 ----N---SGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMIKYYGILDPPLIANGLITLIEDD---ALNGAI 240 (254)
T ss_dssp ----T---CCEEEEEEEESCBSSHHHHGGGCHHHHGGGGGGHHHHHHHHHHHCCBCHHHHHHHHHHHHHCT---TCSSCE
T ss_pred ----C---CCEEEEEEEcCCCCChhhhhccccccccccHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHcCC---CCCCCE
Confidence 6 8999999999999999987654431 12223333333334999999999999999763 599998
Q ss_pred ccc
Q psy13409 323 YAK 325 (330)
Q Consensus 323 ~~~ 325 (330)
+.-
T Consensus 241 i~V 243 (254)
T d2gdza1 241 MKI 243 (254)
T ss_dssp EEE
T ss_pred EEE
Confidence 854
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=100.00 E-value=2.7e-44 Score=325.49 Aligned_cols=221 Identities=22% Similarity=0.297 Sum_probs=199.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCE-------EEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGAR-------VIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~-------Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
++||||||++|||+++|+.|+++|++ |++++|+.++++++.+++++ .+.++.++.||++|+++++++
T Consensus 2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~------~g~~~~~~~~Dvt~~~~v~~~ 75 (240)
T d2bd0a1 2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRA------EGALTDTITADISDMADVRRL 75 (240)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHT------TTCEEEEEECCTTSHHHHHHH
T ss_pred CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHh------cCCcEEEEEecCCCHHHHHHH
Confidence 46899999999999999999999997 99999999999999998876 367899999999999999999
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCc
Q psy13409 90 AQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~ 167 (330)
++++.+.+|++|+||||||..... .+.+.++|++++++|+.|++++++.++|+|+++++|+||++||.++..+.
T Consensus 76 ~~~~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~---- 151 (240)
T d2bd0a1 76 TTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKAF---- 151 (240)
T ss_dssp HHHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC----
T ss_pred HHHHHHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechhhcCCC----
Confidence 999999999999999999987643 78899999999999999999999999999999989999999999998875
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
++.++|++||+|+.+|+++||.|++
T Consensus 152 ----------~~~~~Y~asK~al~~lt~~la~el~--------------------------------------------- 176 (240)
T d2bd0a1 152 ----------RHSSIYCMSKFGQRGLVETMRLYAR--------------------------------------------- 176 (240)
T ss_dssp ----------TTCHHHHHHHHHHHHHHHHHHHHHT---------------------------------------------
T ss_pred ----------CCChHHHHHHHHHHHHHHHHHHHhC---------------------------------------------
Confidence 7889999999999999999999999
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCcee
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLY 322 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~ 322 (330)
+ .|||||+|+||+|+|+++........ ++ +.+|+|+|++++||++++ +++++|+.
T Consensus 177 -----~---~gIrvn~i~PG~v~T~~~~~~~~~~~---------~~--~~~PedvA~~v~~l~s~~-~~~~~~~~ 231 (240)
T d2bd0a1 177 -----K---CNVRITDVQPGAVYTPMWGKVDDEMQ---------AL--MMMPEDIAAPVVQAYLQP-SRTVVEEI 231 (240)
T ss_dssp -----T---TTEEEEEEEECCBCSTTTCCCCSTTG---------GG--SBCHHHHHHHHHHHHTSC-TTEEEEEE
T ss_pred -----c---CCeEEEEeeeCcccCchhhhcCHhhH---------hc--CCCHHHHHHHHHHHHcCC-ccCccCCE
Confidence 6 89999999999999999877654321 22 789999999999999875 45777764
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.8e-44 Score=328.79 Aligned_cols=238 Identities=15% Similarity=0.102 Sum_probs=195.5
Q ss_pred CCCCCCCCEEEEEcCCC--chHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHH
Q psy13409 10 ADTRLDGKTAIVTGSNT--GIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVR 87 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~--gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~ 87 (330)
+..+|+||++|||||+| |||+++|++|+++|++|++++|++...++..+ +... ..+..++.+|++++++++
T Consensus 2 ~~~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~-~~~~------~~~~~~~~~D~~~~~~v~ 74 (256)
T d1ulua_ 2 LTVDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEK-LAEA------LGGALLFRADVTQDEELD 74 (256)
T ss_dssp EEECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH-HHHH------TTCCEEEECCTTCHHHHH
T ss_pred CCcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHH-hhhc------cCcccccccccCCHHHHH
Confidence 45689999999999986 99999999999999999999999765554433 3332 456778999999999999
Q ss_pred HHHHHHHhcCCCeeEEEEcCCCCCC------CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCccc
Q psy13409 88 KCAQEILDNESAIHLLINNAGVMMC------PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTW 161 (330)
Q Consensus 88 ~l~~~i~~~~g~iDvlInnAG~~~~------~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~ 161 (330)
++++++.+.+|++|+||||||.... ..+.+.++|+..+++|+.+++.+++.++|+|.+ +|+||++||..+..
T Consensus 75 ~~~~~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~--~G~Iv~isS~~~~~ 152 (256)
T d1ulua_ 75 ALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLRE--GGGIVTLTYYASEK 152 (256)
T ss_dssp HHHHHHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEE--EEEEEEEECGGGTS
T ss_pred HHHHHHHHhcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhcc--CCEEEEEeehHhcC
Confidence 9999999999999999999998642 256788899999999999999999999998865 48999999999877
Q ss_pred CCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCc
Q psy13409 162 GDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTN 241 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (330)
+. +...+|++||+|+++|+|++|+|++
T Consensus 153 ~~--------------~~~~~Y~asKaal~~ltr~lA~ela--------------------------------------- 179 (256)
T d1ulua_ 153 VV--------------PKYNVMAIAKAALEASVRYLAYELG--------------------------------------- 179 (256)
T ss_dssp BC--------------TTCHHHHHHHHHHHHHHHHHHHHHG---------------------------------------
T ss_pred CC--------------CCchHHHHHHHHHHHHHHHHHHHhc---------------------------------------
Confidence 74 7889999999999999999999999
Q ss_pred ccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccC
Q psy13409 242 HYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERET 319 (330)
Q Consensus 242 ~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~ 319 (330)
+ .|||||+|+||+|+|++...........+... .|++| +.+|+|+|++++||+++ +++|+|
T Consensus 180 -----------~---~gIrVN~I~PG~i~t~~~~~~~~~~~~~~~~~~~~pl~R--~~~pedvA~~v~fL~S~-~s~~it 242 (256)
T d1ulua_ 180 -----------P---KGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPLRR--NITQEEVGNLGLFLLSP-LASGIT 242 (256)
T ss_dssp -----------G---GTCEEEEEEECCC----------CHHHHHHHHHHSTTSS--CCCHHHHHHHHHHHHSG-GGTTCC
T ss_pred -----------c---cCCEEeeeccceeeeccccchhhhHHHHHHHHhcCCCCC--CcCHHHHHHHHHHHhCc-hhCCcc
Confidence 6 89999999999999999877665544444443 35555 99999999999999965 678999
Q ss_pred ceecccC
Q psy13409 320 GLYYAKA 326 (330)
Q Consensus 320 G~~~~~~ 326 (330)
|+.|.-.
T Consensus 243 G~~i~VD 249 (256)
T d1ulua_ 243 GEVVYVD 249 (256)
T ss_dssp SCEEEES
T ss_pred CCeEEEC
Confidence 9998643
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=100.00 E-value=2.4e-44 Score=325.97 Aligned_cols=230 Identities=23% Similarity=0.273 Sum_probs=194.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
+|+||++|||||++|||+++|++|+++|++|++++|+.+++++..++ .+.++.+++||+++++++++++++
T Consensus 2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~---------~~~~~~~~~~Dls~~~~i~~~~~~ 72 (241)
T d2a4ka1 2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAA---------LEAEAIAVVADVSDPKAVEAVFAE 72 (241)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT---------CCSSEEEEECCTTSHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH---------cCCceEEEEecCCCHHHHHHHHHH
Confidence 68999999999999999999999999999999999999887665543 357889999999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 93 ILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
+.+.+|++|+||||||..... .+.+.++|+.++++|+.+++.+++.++|+|.+ ++.|+++||.+. .+.
T Consensus 73 i~~~~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~--~~~i~~~ss~a~-~~~------- 142 (241)
T d2a4ka1 73 ALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEE--GGSLVLTGSVAG-LGA------- 142 (241)
T ss_dssp HHHHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCT--TCEEEEECCCTT-CCH-------
T ss_pred HHHHhCCccEeccccccccccchhhhhcccccccccccccccccccccccccccc--ccceeecccccc-ccc-------
Confidence 999999999999999987543 68999999999999999999999999998865 356666666543 332
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
+++..|+++|+|+++|+++||+|++
T Consensus 143 -------~~~~~Y~~sK~al~~lt~~lA~el~------------------------------------------------ 167 (241)
T d2a4ka1 143 -------FGLAHYAAGKLGVVGLARTLALELA------------------------------------------------ 167 (241)
T ss_dssp -------HHHHHHHHCSSHHHHHHHHHHHHHT------------------------------------------------
T ss_pred -------cCccccchhhHHHHHHHHHHHHHHh------------------------------------------------
Confidence 6788999999999999999999999
Q ss_pred CCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 251 PPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 251 ~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+ .|||||+|+||+|+|++.....+. ..+... .+++| +.+|+|+|++++||+++ .++|+||+.|.-.
T Consensus 168 --~---~gIrvN~I~PG~v~T~~~~~~~~~--~~~~~~~~~p~~r--~~~p~dva~~v~fL~S~-~s~~itG~~i~vD 235 (241)
T d2a4ka1 168 --R---KGVRVNVLLPGLIQTPMTAGLPPW--AWEQEVGASPLGR--AGRPEEVAQAALFLLSE-ESAYITGQALYVD 235 (241)
T ss_dssp --T---TTCEEEEEEECSBCCGGGTTSCHH--HHHHHHHTSTTCS--CBCHHHHHHHHHHHHSG-GGTTCCSCEEEES
T ss_pred --H---hCCEEeeeccCcCCCHHHHhhhHh--HHHHHHhCCCCCC--CcCHHHHHHHHHHHhcc-hhCCCcCceEEeC
Confidence 6 899999999999999988765432 222222 45555 89999999999999965 7789999988644
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=100.00 E-value=3.7e-44 Score=326.65 Aligned_cols=227 Identities=17% Similarity=0.153 Sum_probs=196.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhcC
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNE 97 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~~ 97 (330)
|+|||||++|||+++|+.|+++|++|++++|+.+.++++.+.... +..+|++++++++++++++.+.+
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~~~~------------~~~~dv~~~~~~~~~~~~~~~~~ 69 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAET------------YPQLKPMSEQEPAELIEAVTSAY 69 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHH------------CTTSEECCCCSHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhhhCc------------EEEeccCCHHHHHHHHHHHHHHc
Confidence 799999999999999999999999999999998887776543322 24689999999999999999999
Q ss_pred CCeeEEEEcCCCCCC---CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccc
Q psy13409 98 SAIHLLINNAGVMMC---PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLE 174 (330)
Q Consensus 98 g~iDvlInnAG~~~~---~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~ 174 (330)
|+||+||||||.... ..+.+.++|++.+++|+.++++++|.++|+|.+++.|+||++||.++..+.
T Consensus 70 G~iDiLVnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IV~isS~~~~~~~----------- 138 (252)
T d1zmta1 70 GQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPW----------- 138 (252)
T ss_dssp SCCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTSCC-----------
T ss_pred CCCCEEEECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccceeeccccccccccc-----------
Confidence 999999999997543 368899999999999999999999999999999999999999999987774
Q ss_pred cCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCCC
Q psy13409 175 KGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGA 254 (330)
Q Consensus 175 ~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (330)
+...+|++||+|+++|+|+||+|++ +
T Consensus 139 ---~~~~~Y~asKaal~~lt~~lA~ela--------------------------------------------------~- 164 (252)
T d1zmta1 139 ---KELSTYTSARAGACTLANALSKELG--------------------------------------------------E- 164 (252)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHG--------------------------------------------------G-
T ss_pred ---ccccccccccccHHHHHHHHHHHhc--------------------------------------------------c-
Confidence 7788999999999999999999999 6
Q ss_pred CCCceeEEEeeCcccccCcccccCCC------chhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 255 NITNVNTYAVHPGVVDTELSRHFDSI------IPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 255 ~~~~i~v~~v~pG~v~t~~~~~~~~~------~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
.|||||+|+||+|+|++....... ++..+... .+++| +++|+|+|++++||+++ +++|+||+.|.-.
T Consensus 165 --~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~e~~~~~~~~~pl~R--~g~pedvA~~v~fL~S~-~s~~iTG~~i~vd 239 (252)
T d1zmta1 165 --YNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTALQR--LGTQKELGELVAFLASG-SCDYLTGQVFWLA 239 (252)
T ss_dssp --GTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHHSSSSS--CBCHHHHHHHHHHHHTT-SCGGGTTCEEEES
T ss_pred --cCcEEEEEecCCCcCcchhhhhhcccccCCHHHHHHHHhcCCCCC--CcCHHHHHHHHHHHhCc-hhcCCcCCeEEEC
Confidence 899999999999999987665432 12222232 34555 89999999999999966 6789999998654
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.6e-43 Score=320.15 Aligned_cols=238 Identities=20% Similarity=0.176 Sum_probs=204.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHH---CCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAK---RGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~---~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
.|+||++|||||++|||+++|++|++ +|++|++++|+.++++++.+++.... .+.++.++.||++++++++++
T Consensus 3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~----~~~~~~~~~~Dvs~~~~v~~l 78 (259)
T d1oaaa_ 3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQ----PDLKVVLAAADLGTEAGVQRL 78 (259)
T ss_dssp CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHC----TTSEEEEEECCTTSHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhc----CCceEEEEEccCCCHHHHHHH
Confidence 58999999999999999999999986 79999999999999999999998764 466899999999999999999
Q ss_pred HHHHHhc----CCCeeEEEEcCCCCCC-----CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC--CCeEEEEcCCC
Q psy13409 90 AQEILDN----ESAIHLLINNAGVMMC-----PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA--PARIINLSSLA 158 (330)
Q Consensus 90 ~~~i~~~----~g~iDvlInnAG~~~~-----~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~--~g~IV~iSS~~ 158 (330)
++.+.+. ++.+|++|||||...+ ..+.+.++|++++++|+.+++++++.++|+|.+++ .|+||++||.+
T Consensus 79 ~~~~~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~ 158 (259)
T d1oaaa_ 79 LSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLC 158 (259)
T ss_dssp HHHHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGG
T ss_pred HHHHHHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCccccccccccc
Confidence 9998773 4689999999997542 25788899999999999999999999999998875 57999999999
Q ss_pred cccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCC
Q psy13409 159 HTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQT 238 (330)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (330)
+..+. +.+.+|++||+|+++|+++||.| .
T Consensus 159 ~~~~~--------------~~~~~Y~asKaal~~lt~~la~e-~------------------------------------ 187 (259)
T d1oaaa_ 159 ALQPY--------------KGWGLYCAGKAARDMLYQVLAAE-E------------------------------------ 187 (259)
T ss_dssp GTSCC--------------TTCHHHHHHHHHHHHHHHHHHHH-C------------------------------------
T ss_pred ccCCC--------------ccchHHHHHHHHHHHHHHHHHhC-C------------------------------------
Confidence 88775 78899999999999999999998 3
Q ss_pred CCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCC---CchhhHHHH--HHhhhhhccChHHHHHHHHHhhccc
Q psy13409 239 PTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDS---IIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDK 313 (330)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~ 313 (330)
+|||||+|+||+|+|++.+.... .+...+.+. .+.++ +.+|+|+|+.++||+++
T Consensus 188 ------------------~gIrVn~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~r--~~~p~evA~~i~~ll~~- 246 (259)
T d1oaaa_ 188 ------------------PSVRVLSYAPGPLDNDMQQLARETSKDPELRSKLQKLKSDGA--LVDCGTSAQKLLGLLQK- 246 (259)
T ss_dssp ------------------TTEEEEEEECCSBSSHHHHHHHHHCSCHHHHHHHHHHHHTTC--SBCHHHHHHHHHHHHHH-
T ss_pred ------------------CCCEEEEEEcCCCCCHHHHHhhhcCCCHHHHHHHHhcCCCCC--CCCHHHHHHHHHHHhhh-
Confidence 68999999999999998764422 222333333 34444 89999999999999965
Q ss_pred cccccCceecccCC
Q psy13409 314 KCERETGLYYAKAD 327 (330)
Q Consensus 314 ~~~~~~G~~~~~~~ 327 (330)
.+|+||++|+.+|
T Consensus 247 -~s~~TG~~idv~d 259 (259)
T d1oaaa_ 247 -DTFQSGAHVDFYD 259 (259)
T ss_dssp -CCSCTTEEEETTC
T ss_pred -ccCCCCCeEEecC
Confidence 3699999999876
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=100.00 E-value=3.3e-43 Score=321.40 Aligned_cols=238 Identities=22% Similarity=0.251 Sum_probs=201.0
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEe-cChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMAC-RSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~-R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
.|+||+||||||++|||+++|+.|+++|++|++++ |+.+.++++.+++++ .+.++.+++||++++++++++++
T Consensus 3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~------~g~~~~~~~~D~~~~~~v~~~~~ 76 (259)
T d1ja9a_ 3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKK------LGAQGVAIQADISKPSEVVALFD 76 (259)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH------TTCCEEEEECCTTSHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHH------cCCCceEecCCCCCHHHHHHHHH
Confidence 59999999999999999999999999999999875 556667888888876 37789999999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 92 EILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
++.+.+|.||++|||||..... .+.+.++|++.+++|+.+++++++.++|+|+++ +++++++|..+....
T Consensus 77 ~~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~--g~~iii~s~~~~~~~------ 148 (259)
T d1ja9a_ 77 KAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRG--GRIILTSSIAAVMTG------ 148 (259)
T ss_dssp HHHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEE--EEEEEECCGGGTCCS------
T ss_pred HHHHHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcC--CcccccccccccccC------
Confidence 9999999999999999987543 678999999999999999999999999999653 688888887665431
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
.+....|+++|+|+++|+|+||.|++
T Consensus 149 -------~~~~~~Y~asK~al~~l~r~lA~e~~----------------------------------------------- 174 (259)
T d1ja9a_ 149 -------IPNHALYAGSKAAVEGFCRAFAVDCG----------------------------------------------- 174 (259)
T ss_dssp -------CCSCHHHHHHHHHHHHHHHHHHHHHG-----------------------------------------------
T ss_pred -------CCCchhHHHHHHHHHHHHHHHHHHHh-----------------------------------------------
Confidence 37889999999999999999999999
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCC-----------chhhHHHH--HHhhhhhccChHHHHHHHHHhhcccccc
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSI-----------IPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCE 316 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~-----------~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~ 316 (330)
+ .|||||+|+||+|+|++.+..... ....+... .+++| +++|+|+|++++||+++ +++
T Consensus 175 ---~---~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~R--~g~p~eVa~~v~fL~S~-~a~ 245 (259)
T d1ja9a_ 175 ---A---KGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANMNPLKR--IGYPADIGRAVSALCQE-ESE 245 (259)
T ss_dssp ---G---GTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHHTSTTSS--CBCHHHHHHHHHHHHSG-GGT
T ss_pred ---h---cCeEEeccCcCCccChhhhhhhhhhhhhhcccCCHHHHHHHHHhCCCCCC--CcCHHHHHHHHHHHhCc-hhc
Confidence 6 799999999999999986432211 11122222 34555 89999999999999976 678
Q ss_pred ccCceecccCC
Q psy13409 317 RETGLYYAKAD 327 (330)
Q Consensus 317 ~~~G~~~~~~~ 327 (330)
|+||+.|.-.+
T Consensus 246 ~itG~~i~vDG 256 (259)
T d1ja9a_ 246 WINGQVIKLTG 256 (259)
T ss_dssp TCCSCEEEEST
T ss_pred CCcCceEEeCC
Confidence 99999987543
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=4.9e-43 Score=315.84 Aligned_cols=221 Identities=18% Similarity=0.200 Sum_probs=188.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
|+||++|||||++|||+++|+.|+++|++|++++|+.+.+++. + ..++.||+++. ++.+
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~-------------~--~~~~~~Dv~~~------~~~~ 60 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRS-------------G--HRYVVCDLRKD------LDLL 60 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHT-------------C--SEEEECCTTTC------HHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHhc-------------C--CcEEEcchHHH------HHHH
Confidence 7999999999999999999999999999999999997654331 2 24578999864 3445
Q ss_pred HhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccc
Q psy13409 94 LDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDI 171 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~ 171 (330)
.+.++++|+||||||..... .+.+.++|++.+++|+.+++.+++.++|.|++++.|+||+++|..+..+.
T Consensus 61 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~G~ii~i~S~~~~~~~-------- 132 (234)
T d1o5ia_ 61 FEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISPI-------- 132 (234)
T ss_dssp HHHSCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC--------
T ss_pred HHHhCCCcEEEecccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccccccccccccccccccc--------
Confidence 56789999999999976533 68899999999999999999999999999999989999999998877664
Q ss_pred ccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCC
Q psy13409 172 NLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHP 251 (330)
Q Consensus 172 ~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (330)
+....|++||+|+++|+|++|.|++
T Consensus 133 ------~~~~~Y~asKaal~~ltk~lA~ela------------------------------------------------- 157 (234)
T d1o5ia_ 133 ------ENLYTSNSARMALTGFLKTLSFEVA------------------------------------------------- 157 (234)
T ss_dssp ------TTBHHHHHHHHHHHHHHHHHHHHHG-------------------------------------------------
T ss_pred ------cccccchhHHHHHHHHHHHHHHHhc-------------------------------------------------
Confidence 7888999999999999999999999
Q ss_pred CCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 252 PGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 252 ~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+ .|||||+|+||+|+|++......... .+... .|++| +.+|+|+|++++||+++ +++|+||+.|.-.
T Consensus 158 -~---~gIrVN~I~PG~v~T~~~~~~~~~~~-~~~~~~~~pl~R--~~~pediA~~v~fL~S~-~s~~itG~~i~vD 226 (234)
T d1o5ia_ 158 -P---YGITVNCVAPGWTETERVKELLSEEK-KKQVESQIPMRR--MAKPEEIASVVAFLCSE-KASYLTGQTIVVD 226 (234)
T ss_dssp -G---GTEEEEEEEECSBCCTTHHHHSCHHH-HHHHHTTSTTSS--CBCHHHHHHHHHHHHSG-GGTTCCSCEEEES
T ss_pred -c---cCeEEeecccCccchhhhhhhcCHHH-HHHHHhcCCCCC--CcCHHHHHHHHHHHhCh-hhcCCcCcEEEEC
Confidence 6 79999999999999999876554322 22232 45566 99999999999999965 6889999998654
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=100.00 E-value=1.5e-42 Score=318.94 Aligned_cols=240 Identities=20% Similarity=0.298 Sum_probs=203.3
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecC-hhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRS-LEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~-~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
..+|+||++|||||++|||+++|+.|+++|++|++++|+ .+.++++.+++.+ .+.++.++.+|++++++++++
T Consensus 13 ~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~------~g~~~~~~~~D~~~~~~v~~~ 86 (272)
T d1g0oa_ 13 SASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKK------NGSDAACVKANVGVVEDIVRM 86 (272)
T ss_dssp GGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH------TTCCEEEEECCTTCHHHHHHH
T ss_pred CcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHh------hCCceeeEeCCCCCHHHHHHH
Confidence 346999999999999999999999999999999999887 5567777777766 367899999999999999999
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCc
Q psy13409 90 AQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~ 167 (330)
++++.+.++++|++|||+|..... .+.+.++|++.+++|+.+++.+++.++|+|.+ .|++++++|..+..+.
T Consensus 87 ~~~~~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~--~g~~i~i~s~~~~~~~---- 160 (272)
T d1g0oa_ 87 FEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEI--GGRLILMGSITGQAKA---- 160 (272)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCT--TCEEEEECCGGGTCSS----
T ss_pred HHHHHHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccc--cccccccccccccccc----
Confidence 999999999999999999987543 68899999999999999999999999999976 4899999988765542
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
.+....|+++|+|+++|+|++|+||+
T Consensus 161 ---------~~~~~~Y~asKaal~~ltk~lA~e~~--------------------------------------------- 186 (272)
T d1g0oa_ 161 ---------VPKHAVYSGSKGAIETFARCMAIDMA--------------------------------------------- 186 (272)
T ss_dssp ---------CSSCHHHHHHHHHHHHHHHHHHHHHG---------------------------------------------
T ss_pred ---------ccchhhHHHHHHHHHHHHHHHHHHhc---------------------------------------------
Confidence 36778899999999999999999999
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCCCc---------hhhH--HH--HHHhhhhhccChHHHHHHHHHhhcccc
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSII---------PGTA--WL--YQRVGGLFIKSPLQGAQTTLYCALDKK 314 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~---------~~~~--~~--~~~~~~~~~~~~~e~a~~~~~l~~~~~ 314 (330)
+ .|||||+|+||+|+|++.+...... .... .. ..|++| +.+|+|+|++++||+++ .
T Consensus 187 -----~---~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlgR--~~~peevA~~v~fL~s~-~ 255 (272)
T d1g0oa_ 187 -----D---KKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWSPLRR--VGLPIDIARVVCFLASN-D 255 (272)
T ss_dssp -----G---GTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHHSCTTCS--CBCHHHHHHHHHHHHSG-G
T ss_pred -----h---hCeEEEEEccCCcCChHHHHHHHhhhhcccccchHHHHHHHHHccCCCCC--CcCHHHHHHHHHHHhCc-h
Confidence 6 8999999999999999865432211 1111 11 134566 99999999999999965 6
Q ss_pred ccccCceecccCC
Q psy13409 315 CERETGLYYAKAD 327 (330)
Q Consensus 315 ~~~~~G~~~~~~~ 327 (330)
++|+||+.|.-.+
T Consensus 256 s~~itG~~i~vDG 268 (272)
T d1g0oa_ 256 GGWVTGKVIGIDG 268 (272)
T ss_dssp GTTCCSCEEEEST
T ss_pred hcCccCceEeECC
Confidence 7899999886543
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3e-42 Score=312.84 Aligned_cols=220 Identities=24% Similarity=0.319 Sum_probs=196.7
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
.+|+||++|||||++|||+++|++|+++|++|++++|+.++++++.++++. .+.++.++.||++|+++++++++
T Consensus 3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~------~~~~~~~~~~Dvs~~~~v~~~~~ 76 (244)
T d1yb1a_ 3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKG------LGAKVHTFVVDCSNREDIYSSAK 76 (244)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH------TTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh------cCCcEEEEEeeCCCHHHHHHHHH
Confidence 469999999999999999999999999999999999999999999999876 36789999999999999999999
Q ss_pred HHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 92 EILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
.+.+.+|.+|++|||||..... .+.+.+.|++++++|+.|++++++.++|.|.+++.|+||++||.++..+.
T Consensus 77 ~i~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~~~~~------ 150 (244)
T d1yb1a_ 77 KVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSV------ 150 (244)
T ss_dssp HHHHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CCCH------
T ss_pred HHHHHcCCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchhcCCC------
Confidence 9999999999999999987643 67888999999999999999999999999999999999999999998875
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
+.+++|++||+|+++|+++|+.|++
T Consensus 151 --------~~~~~Y~asKaal~~~~~~La~El~----------------------------------------------- 175 (244)
T d1yb1a_ 151 --------PFLLAYCSSKFAAVGFHKTLTDELA----------------------------------------------- 175 (244)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------------
T ss_pred --------CCcHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------------
Confidence 7889999999999999999999997
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccc
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDK 313 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~ 313 (330)
+.+.+||+||+|+||+|+|++.+... ...++ ..+|+|+|+.++..+..+
T Consensus 176 ---~~~~~gI~V~~i~PG~v~T~~~~~~~----------~~~~~--~~~pe~va~~i~~~~~~~ 224 (244)
T d1yb1a_ 176 ---ALQITGVKTTCLCPNFVNTGFIKNPS----------TSLGP--TLEPEEVVNRLMHGILTE 224 (244)
T ss_dssp ---HTTCTTEEEEEEEETHHHHCSTTCTH----------HHHCC--CCCHHHHHHHHHHHHHTT
T ss_pred ---hhcCCCEEEEEEEcCCCCChhhhCcC----------ccccC--CCCHHHHHHHHHHHHhcC
Confidence 33336999999999999999876531 12223 679999999999877554
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=100.00 E-value=1.5e-41 Score=314.96 Aligned_cols=244 Identities=18% Similarity=0.199 Sum_probs=204.5
Q ss_pred cCCCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHH
Q psy13409 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRK 88 (330)
Q Consensus 9 ~~~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~ 88 (330)
+...+|+||++|||||++|||+++|++|+++|++|++++|+.+++++..+++.+.. +.++.++.||+++++++++
T Consensus 18 ~~~~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~-----g~~~~~~~~D~~~~~~v~~ 92 (294)
T d1w6ua_ 18 LPPNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT-----GNKVHAIQCDVRDPDMVQN 92 (294)
T ss_dssp SCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-----SSCEEEEECCTTCHHHHHH
T ss_pred CCCCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhc-----CCceEEEEecccChHHHHH
Confidence 33458999999999999999999999999999999999999999999998887763 6788999999999999999
Q ss_pred HHHHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhh-CCCeEEEEcCCCcccCCCC
Q psy13409 89 CAQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKS-APARIINLSSLAHTWGDGS 165 (330)
Q Consensus 89 l~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~-~~g~IV~iSS~~~~~~~~~ 165 (330)
+++.+.+.++++|++|||||..... ...+.++++..+.+|+.+.+.+.+...+.+... ..+.+++++|..+..+.
T Consensus 93 ~~~~~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~~~~-- 170 (294)
T d1w6ua_ 93 TVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGS-- 170 (294)
T ss_dssp HHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHCC--
T ss_pred Hhhhhhhhccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchhhhcc--
Confidence 9999999999999999999987643 678889999999999999999988877766554 45677888887776664
Q ss_pred CcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccc
Q psy13409 166 MHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCK 245 (330)
Q Consensus 166 ~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (330)
+...+|++||+|+++|+|++|.|++
T Consensus 171 ------------~~~~~YsasKaal~~ltk~lA~ela------------------------------------------- 195 (294)
T d1w6ua_ 171 ------------GFVVPSASAKAGVEAMSKSLAAEWG------------------------------------------- 195 (294)
T ss_dssp ------------TTCHHHHHHHHHHHHHHHHHHHHHG-------------------------------------------
T ss_pred ------------cccchHHHHHHHHHHHHHHHHHHHh-------------------------------------------
Confidence 6788999999999999999999999
Q ss_pred ccccCCCCCCCCceeEEEeeCcccccCcccccCCC-chhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCcee
Q psy13409 246 NVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSI-IPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLY 322 (330)
Q Consensus 246 ~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~ 322 (330)
+ .|||||+|+||+|+|++....... ....+... .+++| +++|+|+|++++||+++ .++|+||+.
T Consensus 196 -------~---~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~pl~R--~~~pediA~~v~fL~sd-~s~~itG~~ 262 (294)
T d1w6ua_ 196 -------K---YGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIPCGR--LGTVEELANLAAFLCSD-YASWINGAV 262 (294)
T ss_dssp -------G---GTEEEEEEEECCBCC------CCTTSHHHHHHHTTCTTSS--CBCHHHHHHHHHHHTSG-GGTTCCSCE
T ss_pred -------H---hCeEEEEEccCccccchhhhccCCcHHHHHHHhhcCCCCC--CCCHHHHHHHHHHHhCc-hhcCCCCcE
Confidence 6 899999999999999998765433 22333333 35566 99999999999999966 678999999
Q ss_pred cccCC
Q psy13409 323 YAKAD 327 (330)
Q Consensus 323 ~~~~~ 327 (330)
|...+
T Consensus 263 i~vDG 267 (294)
T d1w6ua_ 263 IKFDG 267 (294)
T ss_dssp EEEST
T ss_pred EEECC
Confidence 87543
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=2.9e-42 Score=322.13 Aligned_cols=225 Identities=20% Similarity=0.309 Sum_probs=196.2
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecC---------hhHHHHHHHHHHHhhcccCCCCeEEEEEccCC
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRS---------LEKAETAADDIRTSLKDVKDAGEVVIRQLDLS 81 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~---------~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls 81 (330)
.++|+||++|||||++|||+++|+.|+++|++|++++|+ ...++++.+++... .....+|++
T Consensus 2 Pm~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~d~~ 72 (302)
T d1gz6a_ 2 PLRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRR---------GGKAVANYD 72 (302)
T ss_dssp CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHT---------TCEEEEECC
T ss_pred CcCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhc---------ccccccccc
Confidence 468999999999999999999999999999999998664 45566666666543 345678999
Q ss_pred CHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCc
Q psy13409 82 SLKSVRKCAQEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAH 159 (330)
Q Consensus 82 ~~~si~~l~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~ 159 (330)
+.++++++++.+.+.+|+||+||||||+..+. .+.+.++|++.+++|+.+++++++.++|+|++++.|+||++||.++
T Consensus 73 ~~~~~~~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~~~ 152 (302)
T d1gz6a_ 73 SVEAGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASG 152 (302)
T ss_dssp CGGGHHHHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHH
T ss_pred hHHHHHHHHHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCChhh
Confidence 99999999999999999999999999987643 7889999999999999999999999999999998999999999999
Q ss_pred ccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCC
Q psy13409 160 TWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTP 239 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (330)
..+. ++..+|++||+|+.+|+++||.|++
T Consensus 153 ~~~~--------------~~~~~Y~asKaal~~lt~~la~E~~------------------------------------- 181 (302)
T d1gz6a_ 153 IYGN--------------FGQANYSAAKLGLLGLANTLVIEGR------------------------------------- 181 (302)
T ss_dssp HHCC--------------TTCHHHHHHHHHHHHHHHHHHHHTG-------------------------------------
T ss_pred cCCC--------------CCcHHHHHHHHHHHHHHHHHHHHHh-------------------------------------
Confidence 8885 7889999999999999999999999
Q ss_pred CcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccC
Q psy13409 240 TNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERET 319 (330)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~ 319 (330)
+ .|||||+|+||++.|++...... .+.+ ..+|+|+|++++||+++ .+ ++|
T Consensus 182 -------------~---~gIrVN~I~PG~~~t~~~~~~~~----------~~~~--~~~PedvA~~v~fL~S~-~a-~it 231 (302)
T d1gz6a_ 182 -------------K---NNIHCNTIAPNAGSRMTETVMPE----------DLVE--ALKPEYVAPLVLWLCHE-SC-EEN 231 (302)
T ss_dssp -------------G---GTEEEEEEEEECCSTTTGGGSCH----------HHHH--HSCGGGTHHHHHHHTST-TC-CCC
T ss_pred -------------c---cCCceeeeCCCCCCcchhhcCcH----------hhHh--cCCHHHHHHHHHHHcCC-Cc-CCC
Confidence 6 89999999999998887554431 2233 57899999999999965 44 799
Q ss_pred ceeccc
Q psy13409 320 GLYYAK 325 (330)
Q Consensus 320 G~~~~~ 325 (330)
|+.|.-
T Consensus 232 G~~i~v 237 (302)
T d1gz6a_ 232 GGLFEV 237 (302)
T ss_dssp SCEEEE
T ss_pred CcEEEe
Confidence 998753
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.9e-42 Score=312.99 Aligned_cols=231 Identities=25% Similarity=0.312 Sum_probs=193.4
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
|.+|+||++|||||++|||+++++.|+++|++|++++|++++++++.+ ...+....+|+.+.+.++..
T Consensus 1 m~~l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~-----------~~~~~~~~~d~~~~~~~~~~- 68 (245)
T d2ag5a1 1 MGRLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEK-----------YPGIQTRVLDVTKKKQIDQF- 68 (245)
T ss_dssp CCTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGG-----------STTEEEEECCTTCHHHHHHH-
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-----------ccCCceeeeecccccccccc-
Confidence 346999999999999999999999999999999999999877655421 34577888999887766555
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCccc-CCCCCc
Q psy13409 91 QEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTW-GDGSMH 167 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~-~~~~~~ 167 (330)
.+.++.+|+||||||..... .+.+.++|+..+++|+.+++.+++.++|+|.+++.|+||++||..+.. +
T Consensus 69 ---~~~~~~id~lVn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~----- 140 (245)
T d2ag5a1 69 ---ANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKG----- 140 (245)
T ss_dssp ---HHHCSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBC-----
T ss_pred ---ccccccceeEEecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCCCceeeeeechhhccCC-----
Confidence 44568999999999987653 678999999999999999999999999999999999999999987643 3
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
.+...+|+++|+|+++|+|+||+|++
T Consensus 141 ---------~~~~~~Y~~sKaal~~l~r~lA~e~~--------------------------------------------- 166 (245)
T d2ag5a1 141 ---------VVNRCVYSTTKAAVIGLTKSVAADFI--------------------------------------------- 166 (245)
T ss_dssp ---------CTTBHHHHHHHHHHHHHHHHHHHHHG---------------------------------------------
T ss_pred ---------ccchhHHHHHHHHHHHHHHHHHHHhh---------------------------------------------
Confidence 37888999999999999999999999
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCCCch----hhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCce
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIP----GTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGL 321 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~ 321 (330)
+ +|||||+|+||+|+|++.++...... ..+... .+++| +.+|+|+|+++.||+++ +++|+||+
T Consensus 167 -----~---~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl~R--~~~pedva~~v~fL~s~-~s~~iTG~ 235 (245)
T d2ag5a1 167 -----Q---QGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQKTGR--FATAEEIAMLCVYLASD-ESAYVTGN 235 (245)
T ss_dssp -----G---GTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTCTTSS--CEEHHHHHHHHHHHHSG-GGTTCCSC
T ss_pred -----h---hCcEEEEEeeceeechhhHhhhhhhhhhHHHHHHHHhcCCCCC--CcCHHHHHHHHHHHhCh-hhCCCcCc
Confidence 6 89999999999999998765433211 112222 35555 89999999999999965 67899999
Q ss_pred ecccC
Q psy13409 322 YYAKA 326 (330)
Q Consensus 322 ~~~~~ 326 (330)
.|.-.
T Consensus 236 ~i~VD 240 (245)
T d2ag5a1 236 PVIID 240 (245)
T ss_dssp EEEEC
T ss_pred eEEeC
Confidence 88644
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=100.00 E-value=5.7e-42 Score=312.66 Aligned_cols=231 Identities=23% Similarity=0.265 Sum_probs=194.3
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCC-CHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLS-SLKSVRKCA 90 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls-~~~si~~l~ 90 (330)
++|+||++|||||++|||+++|++|+++|++|++++|+.++.+...+..... .+.++.++.+|++ +.+++++++
T Consensus 1 m~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~d~~~~~~~~~~~~ 75 (254)
T d1sbya1 1 MDLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAIN-----PKVNITFHTYDVTVPVAESKKLL 75 (254)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHC-----TTSEEEEEECCTTSCHHHHHHHH
T ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHHHhhC-----CCCCEEEEEeecCCCHHHHHHHH
Confidence 4699999999999999999999999999999999998877765554333332 4679999999998 677899999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC---CCeEEEEcCCCcccCCCCCc
Q psy13409 91 QEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA---PARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~---~g~IV~iSS~~~~~~~~~~~ 167 (330)
+.+.+.+++||+||||||.. +.++|++++++|+.|++++++.++|.|.+++ .|+||++||.++..+.
T Consensus 76 ~~~~~~~g~iDilvnnAG~~------~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~~~---- 145 (254)
T d1sbya1 76 KKIFDQLKTVDILINGAGIL------DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAI---- 145 (254)
T ss_dssp HHHHHHHSCCCEEEECCCCC------CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCC----
T ss_pred HHHHHHcCCCCEEEeCCCCC------CHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhccCC----
Confidence 99999999999999999965 5788999999999999999999999998763 5889999999998775
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccc
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
+.+.+|++||+|+.+|+++||.|+.
T Consensus 146 ----------~~~~~Y~asKaal~~~t~~la~el~--------------------------------------------- 170 (254)
T d1sbya1 146 ----------HQVPVYSASKAAVVSFTNSLAKLAP--------------------------------------------- 170 (254)
T ss_dssp ----------TTSHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------
T ss_pred ----------CCCHHHHHHHHHHHHHHHHHHhhcc---------------------------------------------
Confidence 7889999999999999999999998
Q ss_pred ccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecc
Q psy13409 248 LFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYA 324 (330)
Q Consensus 248 ~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~ 324 (330)
+ .|||||+|+||+|+|++.+.........+.........+..+|||+|+.++++++. ..||+.|.
T Consensus 171 -----~---~gIrVn~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~va~~~~~~~~~----~~tG~vi~ 235 (254)
T d1sbya1 171 -----I---TGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLLSHPTQTSEQCGQNFVKAIEA----NKNGAIWK 235 (254)
T ss_dssp -----H---HSEEEEEEEECSEESHHHHSCCCGGGSCTTHHHHHTTSCCEEHHHHHHHHHHHHHH----CCTTCEEE
T ss_pred -----c---cCeEEEEEEeCCCcCccccccccchhHHHHHHhccccCCCCCHHHHHHHHHHhhhC----CCCCCEEE
Confidence 5 79999999999999998876654433333333322233477999999999888743 45898764
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.6e-41 Score=302.97 Aligned_cols=231 Identities=19% Similarity=0.232 Sum_probs=193.1
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
+|+||++|||||++|||+++|++|+++|++|++++|+.+.+++..+++ +.+.....+|+.+.+.++.....
T Consensus 2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l---------~~~~~~~~~~~~~~~~~~~~~~~ 72 (248)
T d2o23a1 2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL---------GNNCVFAPADVTSEKDVQTALAL 72 (248)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHH---------CTTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---------CCCcccccccccccccccccccc
Confidence 589999999999999999999999999999999999999988887765 45678899999999999999999
Q ss_pred HHhcCCCeeEEEEcCCCCCC--------CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhh------CCCeEEEEcCCC
Q psy13409 93 ILDNESAIHLLINNAGVMMC--------PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKS------APARIINLSSLA 158 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~--------~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~------~~g~IV~iSS~~ 158 (330)
+......+|.+++|++.... ..+.+.++|++++++|+.++++++++++|+|..+ ++|+||++||..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~ 152 (248)
T d2o23a1 73 AKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVA 152 (248)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTH
T ss_pred cccccccccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchh
Confidence 98888899999999876532 2466789999999999999999999999998654 468999999999
Q ss_pred cccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCC
Q psy13409 159 HTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQT 238 (330)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (330)
+..+. ++..+|++||+|+++|+++||+|++
T Consensus 153 ~~~~~--------------~~~~~Y~asKaal~~lt~~la~e~~------------------------------------ 182 (248)
T d2o23a1 153 AFEGQ--------------VGQAAYSASKGGIVGMTLPIARDLA------------------------------------ 182 (248)
T ss_dssp HHHCC--------------TTCHHHHHHHHHHHHHHHHHHHHHG------------------------------------
T ss_pred hccCC--------------CCchHHHHHHHHHHHHHHHHHHHhc------------------------------------
Confidence 88775 7889999999999999999999999
Q ss_pred CCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHh-hhhhccChHHHHHHHHHhhccccccc
Q psy13409 239 PTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRV-GGLFIKSPLQGAQTTLYCALDKKCER 317 (330)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~a~~~~~l~~~~~~~~ 317 (330)
+ .|||||+|+||+|+|++.....+..........++ +| +++|+|+|++++||++ ++|
T Consensus 183 --------------~---~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~pl~~R--~g~peevA~~v~fL~s---~~~ 240 (248)
T d2o23a1 183 --------------P---IGIRVMTIAPGLFGTPLLTSLPEKVCNFLASQVPFPSR--LGDPAEYAHLVQAIIE---NPF 240 (248)
T ss_dssp --------------G---GTEEEEEEEECCBCCC----------CHHHHTCSSSCS--CBCHHHHHHHHHHHHH---CTT
T ss_pred --------------c---cCcceeeeccCceecchhhcCCHHHHHHHHhcCCCCCC--CcCHHHHHHHHHHHHh---CCC
Confidence 6 89999999999999999877654321111111233 55 8999999999999985 369
Q ss_pred cCceecc
Q psy13409 318 ETGLYYA 324 (330)
Q Consensus 318 ~~G~~~~ 324 (330)
+||+.|.
T Consensus 241 itGq~I~ 247 (248)
T d2o23a1 241 LNGEVIR 247 (248)
T ss_dssp CCSCEEE
T ss_pred CCceEeE
Confidence 9999874
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.5e-40 Score=305.45 Aligned_cols=236 Identities=20% Similarity=0.191 Sum_probs=186.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEE---EEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVI---MACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vi---l~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
.|+||||||++|||+++|+.|+++|++|+ ++.|+.+..+++.+..++.. ..+.++.++.||++|++++++++++
T Consensus 2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~Dv~~~~~~~~~~~~ 78 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALA---CPPGSLETLQLDVRDSKSVAAARER 78 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTT---CCTTSEEEEECCTTCHHHHHHHHHT
T ss_pred CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHh---ccCCceEEEeccccchHhhhhhhhh
Confidence 58899999999999999999999998754 44565554444444333321 1467899999999999999999987
Q ss_pred HHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 93 ILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
+.+ +.+|++|||+|..... .+.+.++|++++++|+.|++++++.++|+|.+++.|+||++||.++..+.
T Consensus 79 ~~~--g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~~g~~~~------- 149 (285)
T d1jtva_ 79 VTE--GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGL------- 149 (285)
T ss_dssp CTT--SCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTSCC-------
T ss_pred ccc--cchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEechhhcCCC-------
Confidence 743 7899999999987654 67899999999999999999999999999999989999999999998885
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
+..+.|++||+|+.+|+++||.|++
T Consensus 150 -------~~~~~Y~asKaal~~l~~~la~El~------------------------------------------------ 174 (285)
T d1jtva_ 150 -------PFNDVYCASKFALEGLCESLAVLLL------------------------------------------------ 174 (285)
T ss_dssp -------TTCHHHHHHHHHHHHHHHHHHHHHG------------------------------------------------
T ss_pred -------CCchHHHHHHHHHHHHHHHHHHHhh------------------------------------------------
Confidence 7889999999999999999999999
Q ss_pred CCCCCCCceeEEEeeCcccccCcccccCCCch---------hhHHH------HHHhhhhhccChHHHHHHHHHhhccc--
Q psy13409 251 PPGANITNVNTYAVHPGVVDTELSRHFDSIIP---------GTAWL------YQRVGGLFIKSPLQGAQTTLYCALDK-- 313 (330)
Q Consensus 251 ~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~---------~~~~~------~~~~~~~~~~~~~e~a~~~~~l~~~~-- 313 (330)
+ .|||||+|+||+|+|++.+....... ..+.. .......++.+|||||+++++++..+
T Consensus 175 --~---~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PeeVA~~v~~~~~~~~p 249 (285)
T d1jtva_ 175 --P---FGVHLSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTFHRFYQYLAHSKQVFREAAQNPEEVAEVFLTALRAPKP 249 (285)
T ss_dssp --G---GTEEEEEEEECCBCC-------CCHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHCBCHHHHHHHHHHHHHCSSC
T ss_pred --c---cCcEEEEEecCCCCChHHHHhccCHHHHhhccchhHHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHHhCCCC
Confidence 6 89999999999999999876543211 01111 12233334889999999999999754
Q ss_pred cccccCceec
Q psy13409 314 KCERETGLYY 323 (330)
Q Consensus 314 ~~~~~~G~~~ 323 (330)
...|++|+.+
T Consensus 250 ~~ry~~g~~~ 259 (285)
T d1jtva_ 250 TLRYFTTERF 259 (285)
T ss_dssp CSEEESCSTT
T ss_pred CeEEecHHHH
Confidence 4567888644
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.7e-40 Score=305.62 Aligned_cols=236 Identities=25% Similarity=0.360 Sum_probs=194.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHC-CCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKR-GARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~-G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
+++|||||++|||+++|++|+++ |++|++++|+.++++++.++++.. +.++.++.||+++.++++++++++.+
T Consensus 4 rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dvs~~~sv~~~~~~~~~ 77 (275)
T d1wmaa1 4 HVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAE------GLSPRFHQLDIDDLQSIRALRDFLRK 77 (275)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHT------TCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred eEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEEecCCHHHHHHHHHHHHH
Confidence 45599999999999999999986 899999999999999999999874 66789999999999999999999999
Q ss_pred cCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc-----
Q psy13409 96 NESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF----- 168 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~----- 168 (330)
.+++||+||||||+..+. .+.+.++|+.++++|++|++.+++.++|.|++ .|+||++||..+..+.+....
T Consensus 78 ~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~--~g~ivnisS~~~~~~~~~~~~y~~~k 155 (275)
T d1wmaa1 78 EYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKP--QGRVVNVSSIMSVRALKSCSPELQQK 155 (275)
T ss_dssp HHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEE--EEEEEEECCHHHHHHHHTSCHHHHHH
T ss_pred hcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCcccccccceeccccccchhhhhh
Confidence 999999999999987543 56677889999999999999999999999965 489999999877544211100
Q ss_pred -----------------------cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccc
Q psy13409 169 -----------------------EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFS 225 (330)
Q Consensus 169 -----------------------~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (330)
.... .....+..+|++||+|+.+|++.+|++++.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~aY~~sK~a~~~~t~~la~~l~~~--------------------- 213 (275)
T d1wmaa1 156 FRSETITEEELVGLMNKFVEDTKKGVH-QKEGWPSSAYGVTKIGVTVLSRIHARKLSEQ--------------------- 213 (275)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHHHTTCT-TTTTCCSCHHHHHHHHHHHHHHHHHHHHHHH---------------------
T ss_pred hcccccchhhhccccccchhccccccc-ccCCCchHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 0000 1122345679999999999999999999731
Q ss_pred hhhhhhhcccCCCCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHH
Q psy13409 226 NLTILLCDANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQT 305 (330)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~ 305 (330)
....||+||+|+||+|+|++.+... ..+|+|+|++
T Consensus 214 ----------------------------~~~~~I~vn~v~PG~v~T~m~~~~~-----------------~~~pee~A~~ 248 (275)
T d1wmaa1 214 ----------------------------RKGDKILLNACCPGWVRTDMAGPKA-----------------TKSPEEGAET 248 (275)
T ss_dssp ----------------------------CTTSCCEEEEEECCSBCSTTTCTTC-----------------SBCHHHHTHH
T ss_pred ----------------------------hCCCCeEEEEEecccccCCcccCcc-----------------cCCHHHHHHH
Confidence 1126999999999999999976532 4689999999
Q ss_pred HHHhhc-cccccccCceecccCC
Q psy13409 306 TLYCAL-DKKCERETGLYYAKAD 327 (330)
Q Consensus 306 ~~~l~~-~~~~~~~~G~~~~~~~ 327 (330)
++|++. .++..+.+|+|++..+
T Consensus 249 ~~~~a~~~~~~~~~~G~~~~~~~ 271 (275)
T d1wmaa1 249 PVYLALLPPDAEGPHGQFVSEKR 271 (275)
T ss_dssp HHHHHSCCTTCCCCCSCEEETTE
T ss_pred HHHHHcCChhhcCCCeEEEECCE
Confidence 999974 4566788999998654
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=100.00 E-value=1.6e-38 Score=287.99 Aligned_cols=223 Identities=21% Similarity=0.273 Sum_probs=182.2
Q ss_pred CEEEEEcCCCchHHHHHHHHH---HCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELA---KRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~---~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
|+||||||++|||+++|++|+ ++|++|++++|+.++++++.+..+. +.++.++.||++|+++++++++.+
T Consensus 3 KtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dvs~~~~v~~~~~~i 75 (248)
T d1snya_ 3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKN-------HSNIHILEIDLRNFDAYDKLVADI 75 (248)
T ss_dssp SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHH-------CTTEEEEECCTTCGGGHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhc-------CCcEEEEEEEeccHHHHHHHHhhh
Confidence 789999999999999999997 4799999999999988776543332 568999999999999999999988
Q ss_pred Hh--cCCCeeEEEEcCCCCCCC---CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhh-----------CCCeEEEEcCC
Q psy13409 94 LD--NESAIHLLINNAGVMMCP---RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKS-----------APARIINLSSL 157 (330)
Q Consensus 94 ~~--~~g~iDvlInnAG~~~~~---~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~-----------~~g~IV~iSS~ 157 (330)
.+ .++++|+||||||+.... .+.+.++|++++++|+.+++.+++.++|+|++. +.|+||+++|.
T Consensus 76 ~~~~~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S~ 155 (248)
T d1snya_ 76 EGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSI 155 (248)
T ss_dssp HHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCG
T ss_pred HHHhhcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhcccccccccccccccccccc
Confidence 54 678999999999986543 578889999999999999999999999999874 36899999999
Q ss_pred CcccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCC
Q psy13409 158 AHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQ 237 (330)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (330)
.+..+. .+.+++.+|++||+|+.+|++++|.|++
T Consensus 156 ~g~~~~-----------~~~~~~~~Y~aSKaal~~lt~~la~e~~----------------------------------- 189 (248)
T d1snya_ 156 LGSIQG-----------NTDGGMYAYRTSKSALNAATKSLSVDLY----------------------------------- 189 (248)
T ss_dssp GGCSTT-----------CCSCCCHHHHHHHHHHHHHHHHHHHHHG-----------------------------------
T ss_pred ccccCC-----------CCCCChHHHHHHHHHHHHHHHHHHHHhC-----------------------------------
Confidence 876653 1236678999999999999999999999
Q ss_pred CCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccc
Q psy13409 238 TPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCER 317 (330)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~ 317 (330)
+ .||+||+|+||+|+|++...... .++++.++.++.++.. ....
T Consensus 190 ---------------~---~gI~vn~v~PG~v~T~m~~~~~~-----------------~~~~~~~~~i~~~i~~-l~~~ 233 (248)
T d1snya_ 190 ---------------P---QRIMCVSLHPGWVKTDMGGSSAP-----------------LDVPTSTGQIVQTISK-LGEK 233 (248)
T ss_dssp ---------------G---GTCEEEEECCCSBCSTTTCTTCS-----------------BCHHHHHHHHHHHHHH-CCGG
T ss_pred ---------------C---CCeEEEEcCCCcccCCcccccCC-----------------CCchHHHHHHHHHHHh-cCcc
Confidence 5 79999999999999999875432 1233344444444332 2235
Q ss_pred cCceecccCCC
Q psy13409 318 ETGLYYAKADL 328 (330)
Q Consensus 318 ~~G~~~~~~~~ 328 (330)
.||++|++.+.
T Consensus 234 ~tG~~i~~dG~ 244 (248)
T d1snya_ 234 QNGGFVNYDGT 244 (248)
T ss_dssp GTTCEECTTSC
T ss_pred CCCcEEEECCe
Confidence 68999987653
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.8e-38 Score=283.73 Aligned_cols=235 Identities=13% Similarity=0.119 Sum_probs=197.7
Q ss_pred CCCCCEEEEEcCCC--chHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNT--GIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 13 ~~~gk~aLITGas~--gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.|+||++|||||++ |||+++|+.|+++|++|++++|++...++.. ++... ......+.+|+++..++..++
T Consensus 2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~ 74 (258)
T d1qsga_ 2 FLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVE-EFAAQ------LGSDIVLQCDVAEDASIDTMF 74 (258)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHH-HHHHH------TTCCCEEECCTTCHHHHHHHH
T ss_pred cCCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HHHhh------cCCcceeecccchHHHHHHHH
Confidence 48999999999998 8999999999999999999999976555443 33332 456678899999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCC-------CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCC
Q psy13409 91 QEILDNESAIHLLINNAGVMMCP-------RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGD 163 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~-------~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~ 163 (330)
.++.+.++.+|++|||++..... .....+.+...+++|+.+.+.+++.+.+++.+ ++.||++||..+..+.
T Consensus 75 ~~~~~~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Ii~iss~~~~~~~ 152 (258)
T d1qsga_ 75 AELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNP--GSALLTLSYLGAERAI 152 (258)
T ss_dssp HHHHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE--EEEEEEEECGGGTSBC
T ss_pred HHhhhcccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccC--CcEEEEecchhhccCC
Confidence 99999999999999999886432 24566778889999999999999999998754 4789999998876664
Q ss_pred CCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccc
Q psy13409 164 GSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHY 243 (330)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (330)
+....|++||+|+++|++++|+||+
T Consensus 153 --------------~~~~~Y~~sKaal~~ltr~lA~el~----------------------------------------- 177 (258)
T d1qsga_ 153 --------------PNYNVMGLAKASLEANVRYMANAMG----------------------------------------- 177 (258)
T ss_dssp --------------TTTTHHHHHHHHHHHHHHHHHHHHT-----------------------------------------
T ss_pred --------------CCcHHHHHHHHHHHHHHHHHHHHhC-----------------------------------------
Confidence 6778999999999999999999999
Q ss_pred ccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCce
Q psy13409 244 CKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGL 321 (330)
Q Consensus 244 ~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~ 321 (330)
+ +|||||+|+||+|+|++...........+... .|++| +.+|||+|++++||+++ .++|+||+
T Consensus 178 ---------~---~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~pl~R--~~~peeia~~v~fL~s~-~s~~itG~ 242 (258)
T d1qsga_ 178 ---------P---EGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRR--TVTIEDVGNSAAFLCSD-LSAGISGE 242 (258)
T ss_dssp ---------T---TTEEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTTSS--CCCHHHHHHHHHHHTSG-GGTTCCSC
T ss_pred ---------c---cCceeecccccccccccccccchhhhHHHHHHhCCCCCC--CcCHHHHHHHHHHHhCc-hhcCccCc
Confidence 6 89999999999999999887655544444443 45555 99999999999999965 67899999
Q ss_pred ecccC
Q psy13409 322 YYAKA 326 (330)
Q Consensus 322 ~~~~~ 326 (330)
.+.-.
T Consensus 243 ~i~vD 247 (258)
T d1qsga_ 243 VVHVD 247 (258)
T ss_dssp EEEES
T ss_pred eEEEC
Confidence 88643
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=3.2e-38 Score=286.35 Aligned_cols=228 Identities=25% Similarity=0.280 Sum_probs=179.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCC--EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGA--RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
|+.|+||||||++|||+++|++|+++|+ +|++++|+.++++++. +. .+.++.++.||++++++++++++
T Consensus 1 M~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~----~~-----~~~~~~~~~~Dvs~~~~v~~~~~ 71 (250)
T d1yo6a1 1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELK----SI-----KDSRVHVLPLTVTCDKSLDTFVS 71 (250)
T ss_dssp CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHH----TC-----CCTTEEEEECCTTCHHHHHHHHH
T ss_pred CcCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHH----Hh-----hCCceEEEEEecCCHHHHHHHHH
Confidence 4569999999999999999999999996 6999999998876543 22 36789999999999999999999
Q ss_pred HHHhcCC--CeeEEEEcCCCCCC---CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-----------CCeEEEEc
Q psy13409 92 EILDNES--AIHLLINNAGVMMC---PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-----------PARIINLS 155 (330)
Q Consensus 92 ~i~~~~g--~iDvlInnAG~~~~---~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-----------~g~IV~iS 155 (330)
.+.+.++ .+|+||||||+..+ ..+.+.++|++++++|+.|++++++.++|+|++++ .+++++++
T Consensus 72 ~i~~~~~~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s 151 (250)
T d1yo6a1 72 KVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITIS 151 (250)
T ss_dssp HHHHHHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEEC
T ss_pred HHHHHhCCCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceeccccccc
Confidence 9988765 49999999998653 36788899999999999999999999999998752 37899998
Q ss_pred CCCcccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhccc
Q psy13409 156 SLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDAN 235 (330)
Q Consensus 156 S~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (330)
|..+....... ..+..+..+|++||+|+.+|+++||.|++
T Consensus 152 ~~~~~~~~~~~-------~~~~~~~~aY~aSKaal~~l~~~la~el~--------------------------------- 191 (250)
T d1yo6a1 152 SGLGSITDNTS-------GSAQFPVLAYRMSKAAINMFGRTLAVDLK--------------------------------- 191 (250)
T ss_dssp CGGGCSTTCCS-------TTSSSCBHHHHHHHHHHHHHHHHHHHHTG---------------------------------
T ss_pred cccccccCCcc-------cccchhHHHHHHHHHHHHHHHHHHHHHhc---------------------------------
Confidence 87665543110 11224566799999999999999999998
Q ss_pred CCCCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccc
Q psy13409 236 LQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKC 315 (330)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~ 315 (330)
+ .||+||+|+||+|+|+|..... ..+|+|.|+.++.++....
T Consensus 192 -----------------~---~gI~v~~i~PG~v~T~m~~~~~-----------------~~~~e~~a~~~~~~~~~~~- 233 (250)
T d1yo6a1 192 -----------------D---DNVLVVNFCPGWVQTNLGGKNA-----------------ALTVEQSTAELISSFNKLD- 233 (250)
T ss_dssp -----------------G---GTCEEEEEECCCC------------------------------HHHHHHHHHHHTTCC-
T ss_pred -----------------c---cCeEEEEEecCCCCCCCCCCCC-----------------CCCHHHHHHHHHHHHhcCC-
Confidence 5 8999999999999999875321 3589999999999986654
Q ss_pred cccCceecccCCC
Q psy13409 316 ERETGLYYAKADL 328 (330)
Q Consensus 316 ~~~~G~~~~~~~~ 328 (330)
...+|+||.+...
T Consensus 234 ~~~sG~f~~~~g~ 246 (250)
T d1yo6a1 234 NSHNGRFFMRNLK 246 (250)
T ss_dssp GGGTTCEEETTEE
T ss_pred CCCCeEEECCCCe
Confidence 3579999987654
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.9e-37 Score=283.18 Aligned_cols=217 Identities=24% Similarity=0.211 Sum_probs=190.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
|+||++|||||++|||+++|++|+++|++|++++|+.++++++.+++... .+..+..+.+|+++.++++.+.+.+
T Consensus 12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~-----~~~~~~~~~~d~~~~~~~~~~~~~~ 86 (269)
T d1xu9a_ 12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLEL-----GAASAHYIAGTMEDMTFAEQFVAQA 86 (269)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH-----TCSEEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhh-----hcccchhhhhhhhhHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999887765 4788999999999999999999999
Q ss_pred HhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccc
Q psy13409 94 LDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDI 171 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~ 171 (330)
.+.++.+|++|||||..... .+.+.++|++++++|+.+++.+++.++|+|.++ +|+||++||.++..+.
T Consensus 87 ~~~~g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~-~G~ii~isS~~~~~~~-------- 157 (269)
T d1xu9a_ 87 GKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS-NGSIVVVSSLAGKVAY-------- 157 (269)
T ss_dssp HHHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEEGGGTSCC--------
T ss_pred HHHhCCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhc-CCcceEeccchhcCCC--------
Confidence 99999999999999987543 677999999999999999999999999999754 6999999999988885
Q ss_pred ccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCC
Q psy13409 172 NLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHP 251 (330)
Q Consensus 172 ~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (330)
+...+|++||+|+++|+++|+.|++..
T Consensus 158 ------p~~~~Y~asKaal~~~~~~La~El~~~----------------------------------------------- 184 (269)
T d1xu9a_ 158 ------PMVAAYSASKFALDGFFSSIRKEYSVS----------------------------------------------- 184 (269)
T ss_dssp ------TTCHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------------
T ss_pred ------CCchHHHHHHHHHHHHHHHHHHHhhhc-----------------------------------------------
Confidence 788999999999999999999998721
Q ss_pred CCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhc
Q psy13409 252 PGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCAL 311 (330)
Q Consensus 252 ~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~ 311 (330)
+ .||+||+|+||+|+|++.+....... .....+|+|+|+.++....
T Consensus 185 -~---~~I~V~~v~PG~v~T~~~~~~~~~~~----------~~~~~~~e~~a~~i~~~~~ 230 (269)
T d1xu9a_ 185 -R---VNVSITLCVLGLIDTETAMKAVSGIV----------HMQAAPKEECALEIIKGGA 230 (269)
T ss_dssp -T---CCCEEEEEEECCBCCHHHHHHSCGGG----------GGGCBCHHHHHHHHHHHHH
T ss_pred -C---CCEEEEEEecCcCCCcHHHHhccCCc----------cccCCCHHHHHHHHHHHhh
Confidence 3 58999999999999998765433211 1124678888888877553
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=100.00 E-value=5.6e-37 Score=281.46 Aligned_cols=236 Identities=16% Similarity=0.108 Sum_probs=179.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecC-hhHHHHHHHHHHHhhccc------------CCCCeEEEEEccCCCH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRS-LEKAETAADDIRTSLKDV------------KDAGEVVIRQLDLSSL 83 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~-~~~l~~~~~~l~~~~~~~------------~~~~~v~~i~~Dls~~ 83 (330)
+++|||||++|||+++|+.|+++|++|++++++ .+.++++.++++...... .....+..+.+|++++
T Consensus 3 pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dv~~~ 82 (284)
T d1e7wa_ 3 PVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVTLF 82 (284)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCBCHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHhhcCCceEEEEeecccccccccccccccccCCCH
Confidence 689999999999999999999999999998764 566777777777653210 0122334456679999
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEcCCCCCCC--CCCChhh--------------HHHhHHHHHHHHHHHHHHHHHHHhh--
Q psy13409 84 KSVRKCAQEILDNESAIHLLINNAGVMMCP--RQLTEDG--------------YELQFATNHLGHYLFTLLLLPRIIK-- 145 (330)
Q Consensus 84 ~si~~l~~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~--------------~~~~l~vN~~g~~~l~~~~l~~l~~-- 145 (330)
++++++++++.+.+|++|+||||||...+. .+.+.++ +...+.+|+.+++++.+.+.+.+..
T Consensus 83 ~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~ 162 (284)
T d1e7wa_ 83 TRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTP 162 (284)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccchhhhhH
Confidence 999999999999999999999999987543 3333333 3357899999999999999887543
Q ss_pred ----hCCCeEEEEcCCCcccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccc
Q psy13409 146 ----SAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRT 221 (330)
Q Consensus 146 ----~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~ 221 (330)
.+.++||+++|..+..+. ++..+|++||+|+++|++++|+||+
T Consensus 163 ~~~~~~~~~ii~~~s~~~~~~~--------------~~~~~Y~asKaal~~lt~~lA~el~------------------- 209 (284)
T d1e7wa_ 163 AKHRGTNYSIINMVDAMTNQPL--------------LGYTIYTMAKGALEGLTRSAALELA------------------- 209 (284)
T ss_dssp GGGSCSCEEEEEECCTTTTSCC--------------TTCHHHHHHHHHHHHHHHHHHHHHG-------------------
T ss_pred HHhcCCCCcccccccccccCCc--------------cceeeeccccccchhhhHHHHHHhC-------------------
Confidence 235789999998877664 7788999999999999999999999
Q ss_pred cccchhhhhhhcccCCCCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HH-hhhhhccC
Q psy13409 222 KRFSNLTILLCDANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QR-VGGLFIKS 298 (330)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~-~~~~~~~~ 298 (330)
+ .|||||+|+||++.+.. ... ....+... .+ .+| +++
T Consensus 210 -------------------------------~---~gIrvN~I~PG~t~~~~--~~~--~~~~~~~~~~~pl~~R--~~~ 249 (284)
T d1e7wa_ 210 -------------------------------P---LQIRVNGVGPGLSVLVD--DMP--PAVWEGHRSKVPLYQR--DSS 249 (284)
T ss_dssp -------------------------------G---GTEEEEEEEESSBCCGG--GSC--HHHHHHHHTTCTTTTS--CBC
T ss_pred -------------------------------C---ccccccccccccccccc--cCC--HHHHHHHHhcCCCCCC--CCC
Confidence 6 89999999999865532 221 11222222 23 255 899
Q ss_pred hHHHHHHHHHhhccccccccCceecccC
Q psy13409 299 PLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 299 ~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
|+|+|++++||+++ +++|+||+.|.-.
T Consensus 250 peeiA~~v~fL~S~-~s~~itG~~i~VD 276 (284)
T d1e7wa_ 250 AAEVSDVVIFLCSS-KAKYITGTCVKVD 276 (284)
T ss_dssp HHHHHHHHHHHHSG-GGTTCCSCEEEES
T ss_pred HHHHHHHHHHHhCc-hhcCccCCeEEEC
Confidence 99999999999965 6789999988644
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=100.00 E-value=1.2e-36 Score=281.14 Aligned_cols=247 Identities=16% Similarity=0.111 Sum_probs=187.9
Q ss_pred CCCCCCCCEEEEEcCCC--chHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcc--cC------CCCeEEEEEcc
Q psy13409 10 ADTRLDGKTAIVTGSNT--GIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKD--VK------DAGEVVIRQLD 79 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~--gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~--~~------~~~~v~~i~~D 79 (330)
+.++|+||++|||||++ |||+++|+.|+++|++|++++|+................. .. ...++..+..+
T Consensus 2 ~~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (297)
T d1d7oa_ 2 LPIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAV 81 (297)
T ss_dssp CCCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTT
T ss_pred CCcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhh
Confidence 45789999999999875 9999999999999999999999865433332222111100 00 00122222222
Q ss_pred ------------------CCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCC----CCCCCChhhHHHhHHHHHHHHHHHHH
Q psy13409 80 ------------------LSSLKSVRKCAQEILDNESAIHLLINNAGVMM----CPRQLTEDGYELQFATNHLGHYLFTL 137 (330)
Q Consensus 80 ------------------ls~~~si~~l~~~i~~~~g~iDvlInnAG~~~----~~~~~~~~~~~~~l~vN~~g~~~l~~ 137 (330)
.++..+++++++++.+.+|++|+||||||... +..+.+.++|++.+++|+.+++.+++
T Consensus 82 ~~~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~ 161 (297)
T d1d7oa_ 82 FDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLS 161 (297)
T ss_dssp CCSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHH
T ss_pred ccccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhhhhh
Confidence 24556678999999999999999999999753 23678999999999999999999999
Q ss_pred HHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhh
Q psy13409 138 LLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEI 217 (330)
Q Consensus 138 ~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~ 217 (330)
++++.+.++ |+++++++.+..... .+....|+++|+++..+++.++.|++.
T Consensus 162 ~~~~~~~~~--g~~~~~~~~~~~~~~-------------~~~~~~y~~aKaa~~~l~~~~a~e~~~-------------- 212 (297)
T d1d7oa_ 162 HFLPIMNPG--GASISLTYIASERII-------------PGYGGGMSSAKAALESDTRVLAFEAGR-------------- 212 (297)
T ss_dssp HHGGGEEEE--EEEEEEECGGGTSCC-------------TTCTTTHHHHHHHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHhhcC--Ccceeeeehhhcccc-------------cccccceecccccccccccccchhccc--------------
Confidence 999887654 667777776654432 256678999999999999999999962
Q ss_pred cccccccchhhhhhhcccCCCCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhh
Q psy13409 218 LGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLF 295 (330)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~ 295 (330)
+ .|||||+|+||+|+|++.+.....+...++.. .|++|
T Consensus 213 -----------------------------------~---~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~PlgR-- 252 (297)
T d1d7oa_ 213 -----------------------------------K---QNIRVNTISAGPLGSRAAKAIGFIDTMIEYSYNNAPIQK-- 252 (297)
T ss_dssp -----------------------------------H---HCCEEEEEEECCCBCCCSSCCSHHHHHHHHHHHHSSSCC--
T ss_pred -----------------------------------c---ceEEecccccccccchhhhhccCCHHHHHHHHhCCCCCC--
Confidence 3 59999999999999999876544444444443 35566
Q ss_pred ccChHHHHHHHHHhhccccccccCceecccC
Q psy13409 296 IKSPLQGAQTTLYCALDKKCERETGLYYAKA 326 (330)
Q Consensus 296 ~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~ 326 (330)
+.+|+|+|++++||+++ .++|+||+.|...
T Consensus 253 ~~~peevA~~v~fL~S~-~a~~itGq~i~vD 282 (297)
T d1d7oa_ 253 TLTADEVGNAAAFLVSP-LASAITGATIYVD 282 (297)
T ss_dssp CBCHHHHHHHHHHHTSG-GGTTCCSCEEEES
T ss_pred CCCHHHHHHHHHHHhCc-hhcCCcCceEEEC
Confidence 89999999999999965 6889999988654
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=100.00 E-value=6.3e-37 Score=288.71 Aligned_cols=242 Identities=13% Similarity=0.098 Sum_probs=186.4
Q ss_pred CCCEEEEEc--CCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhccc------CCCCeEEEE----------
Q psy13409 15 DGKTAIVTG--SNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDV------KDAGEVVIR---------- 76 (330)
Q Consensus 15 ~gk~aLITG--as~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~------~~~~~v~~i---------- 76 (330)
.+|++|||| +++|||+++|+.|+++|++|++++++............+..... .........
T Consensus 1 n~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (329)
T d1uh5a_ 1 NEDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAN 80 (329)
T ss_dssp CCCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCSSGG
T ss_pred CCcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcccccceehhhc
Confidence 479999999 55899999999999999999999998776554444332222110 011122233
Q ss_pred ----------EccCCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCC----CCCCChhhHHHhHHHHHHHHHHHHHHHHHH
Q psy13409 77 ----------QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMC----PRQLTEDGYELQFATNHLGHYLFTLLLLPR 142 (330)
Q Consensus 77 ----------~~Dls~~~si~~l~~~i~~~~g~iDvlInnAG~~~~----~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~ 142 (330)
.+|+++.++++++++.+.+.+|+||++|||+|...+ ..+++.++|++.+++|+++.+.++|+++|+
T Consensus 81 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~~~ 160 (329)
T d1uh5a_ 81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNI 160 (329)
T ss_dssp GCCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred ccchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHHHhh
Confidence 346778888999999999999999999999997643 367899999999999999999999999999
Q ss_pred HhhhCCCeEEEEcCCCcccCCCCCcccccccccCCCc-chhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccc
Q psy13409 143 IIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSA-TGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRT 221 (330)
Q Consensus 143 l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~ 221 (330)
|.+ +|+||++||.++..+. +. ...|++||+|+++|+|+||.||+.
T Consensus 161 m~~--~GsIv~iss~~~~~~~--------------p~y~~~y~asKaal~~ltr~lA~Ela~------------------ 206 (329)
T d1uh5a_ 161 MKP--QSSIISLTYHASQKVV--------------PGYGGGMSSAKAALESDTRVLAYHLGR------------------ 206 (329)
T ss_dssp EEE--EEEEEEEECGGGTSCC--------------TTCTTTHHHHHHHHHHHHHHHHHHHHH------------------
T ss_pred ccc--ccccccceeehhcccc--------------cccchhhhhhhccccccchhhHHHHhc------------------
Confidence 954 5899999998877664 33 457999999999999999999972
Q ss_pred cccchhhhhhhcccCCCCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCC----------------------
Q psy13409 222 KRFSNLTILLCDANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDS---------------------- 279 (330)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~---------------------- 279 (330)
. .|||||+|+||+|+|+..+....
T Consensus 207 -------------------------------~---~gIRVNaI~PG~i~T~a~~~i~g~~~~~~~~~~~~~~~~~~~~~~ 252 (329)
T d1uh5a_ 207 -------------------------------N---YNIRINTISAGPLKSRAATAINKLNNTYENNTNQNKNRNRHDVHN 252 (329)
T ss_dssp -------------------------------H---HCCEEEEEEECCCCCTTGGGCC-----------------------
T ss_pred -------------------------------c---cCcEEEEEecCcccchhhhcccchhhhhhhhhhhhhccccccccc
Confidence 1 49999999999999954332110
Q ss_pred ---------------------CchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCceecccCC
Q psy13409 280 ---------------------IIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYAKAD 327 (330)
Q Consensus 280 ---------------------~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~~~~ 327 (330)
.....+... .|++| +.+|+|+|++++||+++ .++|+||+.|...+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl~R--~~~pedvA~~v~fLaSd-~s~~iTGq~i~VDG 320 (329)
T d1uh5a_ 253 IMNNSGEKEEKKISASQNYTFIDYAIEYSEKYAPLRQ--KLLSTDIGSVASFLLSR-ESRAITGQTIYVDN 320 (329)
T ss_dssp -------------------CHHHHHHHHHHHHSSSCS--CCCHHHHHHHHHHHHSG-GGTTCCSCEEEEST
T ss_pred cccccccccchhhhhhhcccchHHHHHHHhccCCCCC--CcCHHHHHHHHHHHhCc-hhCCccCCeEEECC
Confidence 011111112 35566 89999999999999966 78899999986543
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=100.00 E-value=7.8e-36 Score=273.07 Aligned_cols=234 Identities=15% Similarity=0.107 Sum_probs=174.8
Q ss_pred CCCCCEEEEEcCCC--chHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNT--GIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 13 ~~~gk~aLITGas~--gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.|+||++|||||+| |||+++|+.|+++|++|++++|++. +++..+++.+. .....++.+|+++++++++++
T Consensus 2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~-~~~~~~~l~~~------~~~~~~~~~d~~~~~~~~~~~ 74 (274)
T d2pd4a1 2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQE------LNSPYVYELDVSKEEHFKSLY 74 (274)
T ss_dssp TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHHHH------TTCCCEEECCTTCHHHHHHHH
T ss_pred cCCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHhh------CCceeEeeecccchhhHHHHH
Confidence 48999999999765 9999999999999999999999964 44445555553 455677899999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCC---CCC---ChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCe-EEEEcCCCcccCC
Q psy13409 91 QEILDNESAIHLLINNAGVMMCP---RQL---TEDGYELQFATNHLGHYLFTLLLLPRIIKSAPAR-IINLSSLAHTWGD 163 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~---~~~---~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~-IV~iSS~~~~~~~ 163 (330)
+++.+.++.+|++|||+|..... ... ....+...+.++.++.+...+.. +...+.++ |+++||.+...+
T Consensus 75 ~~~~~~~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~s~~~~~~~- 150 (274)
T d2pd4a1 75 NSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTL---KPLLNNGASVLTLSYLGSTKY- 150 (274)
T ss_dssp HHHHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHH---GGGEEEEEEEEEEECGGGTSB-
T ss_pred HHHHHHcCCCCeEEeecccccccccccccccccchhhhhhhcccccccccccccc---ccccccCcceeeecccccccc-
Confidence 99999999999999999987543 222 22222333333333333333333 22223344 555555444333
Q ss_pred CCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccc
Q psy13409 164 GSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHY 243 (330)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (330)
......|+++|+|+++++|++|.|++
T Consensus 151 -------------~~~~~~y~asK~al~~ltr~lA~e~~----------------------------------------- 176 (274)
T d2pd4a1 151 -------------MAHYNVMGLAKAALESAVRYLAVDLG----------------------------------------- 176 (274)
T ss_dssp -------------CTTCHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------
T ss_pred -------------cccchhhhHHHHHHHHHHHhhHHHhc-----------------------------------------
Confidence 26677899999999999999999999
Q ss_pred ccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhccccccccCce
Q psy13409 244 CKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCALDKKCERETGL 321 (330)
Q Consensus 244 ~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~ 321 (330)
+ .|||||+|+||+++|++............... .+++| +.+|+|+|++++||+++ .++++||+
T Consensus 177 ---------~---~GIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r--~~~pedIA~~v~fL~S~-~s~~itG~ 241 (274)
T d2pd4a1 177 ---------K---HHIRVNALSAGPIRTLASSGIADFRMILKWNEINAPLRK--NVSLEEVGNAGMYLLSS-LSSGVSGE 241 (274)
T ss_dssp ---------T---TTCEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTTSS--CCCHHHHHHHHHHHHSG-GGTTCCSC
T ss_pred ---------C---cCceecccccCcccCccccccCchHHHHHHHhhhhhccC--CcCHHHHHHHHHHHhCh-hhCCCcCc
Confidence 6 89999999999999999877665443333333 44555 99999999999999976 68899999
Q ss_pred ecccC
Q psy13409 322 YYAKA 326 (330)
Q Consensus 322 ~~~~~ 326 (330)
.|...
T Consensus 242 ~i~vD 246 (274)
T d2pd4a1 242 VHFVD 246 (274)
T ss_dssp EEEES
T ss_pred eEEEC
Confidence 88643
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.2e-36 Score=272.49 Aligned_cols=218 Identities=22% Similarity=0.269 Sum_probs=179.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
+|++|||||++|||+++|++|+++|++|++++|+.+ ..+...+.+|+++......+.....+
T Consensus 1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~------------------~~~~~~~~~d~~~~~~~~~~~~~~~~ 62 (241)
T d1uaya_ 1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE------------------GEDLIYVEGDVTREEDVRRAVARAQE 62 (241)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC------------------SSSSEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc------------------cccceEeeccccchhhhHHHHHhhhc
Confidence 599999999999999999999999999999999864 34567889999999999999888777
Q ss_pred cCCCeeEEEEcCCCCCC------CCCCChhhHHHhHHHHHHHHHHHHHHHHHHH------hhhCCCeEEEEcCCCcccCC
Q psy13409 96 NESAIHLLINNAGVMMC------PRQLTEDGYELQFATNHLGHYLFTLLLLPRI------IKSAPARIINLSSLAHTWGD 163 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~------~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l------~~~~~g~IV~iSS~~~~~~~ 163 (330)
... .+.++++++.... ....+.+.+++.+++|+.+++.+++.+.+.+ .+++.|+||++||..+..+.
T Consensus 63 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~~ 141 (241)
T d1uaya_ 63 EAP-LFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQ 141 (241)
T ss_dssp HSC-EEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCC
T ss_pred ccc-ccchhhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhccCC
Confidence 654 4555566654322 1456778899999999999999999999984 44457999999999988875
Q ss_pred CCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccc
Q psy13409 164 GSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHY 243 (330)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (330)
++..+|+++|+|+++|+++||.|++
T Consensus 142 --------------~~~~~Y~asKaal~~lt~~lA~ela----------------------------------------- 166 (241)
T d1uaya_ 142 --------------IGQAAYAASKGGVVALTLPAARELA----------------------------------------- 166 (241)
T ss_dssp --------------TTCHHHHHHHHHHHHHHHHHHHHHG-----------------------------------------
T ss_pred --------------CCchhhHHHHHHHHHHHHHHHHHHh-----------------------------------------
Confidence 7889999999999999999999999
Q ss_pred ccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHh-hhhhccChHHHHHHHHHhhccccccccCc
Q psy13409 244 CKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRV-GGLFIKSPLQGAQTTLYCALDKKCERETG 320 (330)
Q Consensus 244 ~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~e~a~~~~~l~~~~~~~~~~G 320 (330)
+ .|||||+|+||+|+|++........ .+... .++ +| +++|+|+|++++||+++ +|+||
T Consensus 167 ---------~---~gIrVN~V~PG~i~T~~~~~~~~~~--~~~~~~~~~~~~R--~g~pedvA~~v~fL~s~---~~iTG 227 (241)
T d1uaya_ 167 ---------G---WGIRVVTVAPGLFDTPLLQGLPEKA--KASLAAQVPFPPR--LGRPEEYAALVLHILEN---PMLNG 227 (241)
T ss_dssp ---------G---GTEEEEEEEECSCSSHHHHTSCHHH--HHHHHTTCCSSCS--CCCHHHHHHHHHHHHHC---TTCCS
T ss_pred ---------h---cCCceeeecCCcccccccchhhhhH--HHHHHhcCCCCCC--CcCHHHHHHHHHHHHhC---CCCCC
Confidence 6 8999999999999999887654322 12222 222 44 89999999999999963 59999
Q ss_pred eecccC
Q psy13409 321 LYYAKA 326 (330)
Q Consensus 321 ~~~~~~ 326 (330)
+.|.-.
T Consensus 228 ~~i~VD 233 (241)
T d1uaya_ 228 EVVRLD 233 (241)
T ss_dssp CEEEES
T ss_pred CEEEEC
Confidence 998653
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=4.3e-36 Score=270.24 Aligned_cols=216 Identities=14% Similarity=0.069 Sum_probs=180.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
+||++|||||++|||+++|+.|+++|++|++++++... .........+|.++.++.+.+...+.
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENE----------------EASASVIVKMTDSFTEQADQVTAEVG 64 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCT----------------TSSEEEECCCCSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccc----------------cccccceeecccCcHHHHHHHHHHHH
Confidence 58999999999999999999999999999999987642 23455677888888888888888876
Q ss_pred hc--CCCeeEEEEcCCCCCC---CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 95 DN--ESAIHLLINNAGVMMC---PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 95 ~~--~g~iDvlInnAG~~~~---~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
+. .+++|+||||||.... ..+.+.++|++++++|+.+++++++.++|+|.+ +|+||++||.++..+.
T Consensus 65 ~~~~~~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~--~G~Iv~isS~~~~~~~------ 136 (236)
T d1dhra_ 65 KLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKE--GGLLTLAGAKAALDGT------ 136 (236)
T ss_dssp HHHTTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEE--EEEEEEECCGGGGSCC------
T ss_pred HHhCCCCceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhccc--ccceeEEccHHHcCCc------
Confidence 64 3579999999996542 256677889999999999999999999999965 5999999999988775
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCccccccccc
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
+...+|++||+|+++|+++||.|++..
T Consensus 137 --------~~~~~Y~asKaal~~lt~~la~El~~~--------------------------------------------- 163 (236)
T d1dhra_ 137 --------PGMIGYGMAKGAVHQLCQSLAGKNSGM--------------------------------------------- 163 (236)
T ss_dssp --------TTBHHHHHHHHHHHHHHHHHTSTTSSC---------------------------------------------
T ss_pred --------cCCcccHHHHHHHHHHHHHHHHHhccC---------------------------------------------
Confidence 788999999999999999999998710
Q ss_pred CCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecc
Q psy13409 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYA 324 (330)
Q Consensus 250 ~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~ 324 (330)
+ +|||||+|+||+|+|++.+....... .++ ...|+++|+.+++|+++ ...++||..+.
T Consensus 164 ---~---~gI~vn~v~PG~v~T~~~~~~~~~~~--------~~~--~~~pe~va~~~~~l~s~-~~~~i~G~~i~ 221 (236)
T d1dhra_ 164 ---P---SGAAAIAVLPVTLDTPMNRKSMPEAD--------FSS--WTPLEFLVETFHDWITG-NKRPNSGSLIQ 221 (236)
T ss_dssp ---C---TTCEEEEEEESCEECHHHHHHSTTSC--------GGG--SEEHHHHHHHHHHHHTT-TTCCCTTCEEE
T ss_pred ---C---CcEEEEEEEeccCcCCcchhhCccch--------hhc--CCCHHHHHHHHHHHhCC-CccCCCCCeEE
Confidence 3 69999999999999999765443322 122 56899999999999966 56799998664
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=100.00 E-value=2.2e-34 Score=261.45 Aligned_cols=232 Identities=19% Similarity=0.163 Sum_probs=181.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhH-HHHHHHHHHHhhcccCCCCeEEEEEccCCC----HHHHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEK-AETAADDIRTSLKDVKDAGEVVIRQLDLSS----LKSVRKCAQ 91 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~-l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~----~~si~~l~~ 91 (330)
+++|||||++|||+++|+.|+++|++|++++|+.++ .+++.+++... .+.+...+.+|+.+ ++.++++++
T Consensus 2 ~vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (266)
T d1mxha_ 2 PAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAA-----RAGSAVLCKGDLSLSSSLLDCCEDIID 76 (266)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH-----STTCEEEEECCCSSSTTHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHHHhh-----cCCceEEEecccccchhHHHHHHHHHH
Confidence 589999999999999999999999999999998654 56777777776 36677777776654 566778888
Q ss_pred HHHhcCCCeeEEEEcCCCCCCCC-------------CCChhhHHHhHHHHHHHHHHHHHHHHHHHhhh-----CCCeEEE
Q psy13409 92 EILDNESAIHLLINNAGVMMCPR-------------QLTEDGYELQFATNHLGHYLFTLLLLPRIIKS-----APARIIN 153 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~~-------------~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~-----~~g~IV~ 153 (330)
.+.+.+|++|++|||||+..+.. +.....+...+..|..+.+...+...+.+... ..+.+++
T Consensus 77 ~~~~~~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (266)
T d1mxha_ 77 CSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVN 156 (266)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEE
T ss_pred HHHHHhCCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccccccccchh
Confidence 88889999999999999875431 22334456678889999888888777766443 2467788
Q ss_pred EcCCCcccCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhc
Q psy13409 154 LSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCD 233 (330)
Q Consensus 154 iSS~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (330)
++|..+..+. +++..|++||+|+++|++++|+|++
T Consensus 157 ~~~~~~~~~~--------------~~~~~Y~asKaal~~lt~~lA~e~~------------------------------- 191 (266)
T d1mxha_ 157 LCDAMTDLPL--------------PGFCVYTMAKHALGGLTRAAALELA------------------------------- 191 (266)
T ss_dssp ECCGGGGSCC--------------TTCHHHHHHHHHHHHHHHHHHHHHG-------------------------------
T ss_pred hhhccccccC--------------cchhhhhhhHHHHhhhHHHHHHHhC-------------------------------
Confidence 8887776664 7899999999999999999999999
Q ss_pred ccCCCCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH--HHhhhhhccChHHHHHHHHHhhc
Q psy13409 234 ANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY--QRVGGLFIKSPLQGAQTTLYCAL 311 (330)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~a~~~~~l~~ 311 (330)
+ .|||||+|+||+|+|+..... ...+... .++++. +++|||+|++++||++
T Consensus 192 -------------------~---~gIrVN~I~PG~i~t~~~~~~----~~~~~~~~~~pl~r~-~~~peeva~~v~fL~s 244 (266)
T d1mxha_ 192 -------------------P---RHIRVNAVAPGLSLLPPAMPQ----ETQEEYRRKVPLGQS-EASAAQIADAIAFLVS 244 (266)
T ss_dssp -------------------G---GTEEEEEEEESSBSCCSSSCH----HHHHHHHTTCTTTSC-CBCHHHHHHHHHHHHS
T ss_pred -------------------c---cCcEEEEeccCcEeccccCCH----HHHHHHHhcCCCCCC-CCCHHHHHHHHHHHhC
Confidence 6 899999999999999865431 1222222 244442 5899999999999996
Q ss_pred cccccccCceecccC
Q psy13409 312 DKKCERETGLYYAKA 326 (330)
Q Consensus 312 ~~~~~~~~G~~~~~~ 326 (330)
+ +++|+||+.|.-.
T Consensus 245 ~-~s~~itG~~i~vD 258 (266)
T d1mxha_ 245 K-DAGYITGTTLKVD 258 (266)
T ss_dssp G-GGTTCCSCEEEES
T ss_pred c-hhCCccCCeEEEC
Confidence 6 6789999987643
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=6.5e-35 Score=262.10 Aligned_cols=216 Identities=13% Similarity=0.073 Sum_probs=177.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
+++||||||++|||++++++|+++|++|++++|+... .......+.+|+.+.++.....+.+.+
T Consensus 2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (235)
T d1ooea_ 2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAND----------------QADSNILVDGNKNWTEQEQSILEQTAS 65 (235)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCT----------------TSSEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchh----------------cccccceeccccCchhHHHHHHHHHHH
Confidence 4567999999999999999999999999999998653 133456677888888887777666655
Q ss_pred --cCCCeeEEEEcCCCCCC---CCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 96 --NESAIHLLINNAGVMMC---PRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 96 --~~g~iDvlInnAG~~~~---~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
.+++||+||||||.... ..+.+.+.|+.++++|+.+++.+++.++|+|++ +|+||++||..+..+.
T Consensus 66 ~~~~g~iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~--~g~Iv~isS~~~~~~~------- 136 (235)
T d1ooea_ 66 SLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKP--GGLLQLTGAAAAMGPT------- 136 (235)
T ss_dssp HHTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEE--EEEEEEECCGGGGSCC-------
T ss_pred HhcCCCeeEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhccccccc--ceEEEEeccHHhcCCc-------
Confidence 57899999999997543 244556789999999999999999999999965 4899999999888775
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccC
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
+.+.+|++||+|+++|+++||.|++..
T Consensus 137 -------~~~~~Y~asKaal~~l~~~la~e~~~~---------------------------------------------- 163 (235)
T d1ooea_ 137 -------PSMIGYGMAKAAVHHLTSSLAAKDSGL---------------------------------------------- 163 (235)
T ss_dssp -------TTBHHHHHHHHHHHHHHHHHHSTTSSC----------------------------------------------
T ss_pred -------ccccchHHHHHHHHHHHHHHHHHhccC----------------------------------------------
Confidence 788999999999999999999998721
Q ss_pred CCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhccccccccCceecc
Q psy13409 251 PPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYYA 324 (330)
Q Consensus 251 ~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~~G~~~~ 324 (330)
+ .+|+||+|+||+++|++.+........ .+ ..+|+|+|+.+++++..+...++||+.+.
T Consensus 164 --~---~~i~v~~i~Pg~~~T~~~~~~~~~~~~--------~~--~~~~~~va~~~~~~l~~~~~~~~tG~~i~ 222 (235)
T d1ooea_ 164 --P---DNSAVLTIMPVTLDTPMNRKWMPNADH--------SS--WTPLSFISEHLLKWTTETSSRPSSGALLK 222 (235)
T ss_dssp --C---TTCEEEEEEESCBCCHHHHHHSTTCCG--------GG--CBCHHHHHHHHHHHHHCGGGCCCTTCEEE
T ss_pred --C---CceEEEEEecCcCcCcchhhhCcCCcc--------cc--CCCHHHHHHHHHHHhcCccccCCCceEEE
Confidence 3 699999999999999987765433221 12 67899999999877767777789998774
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=100.00 E-value=1.4e-34 Score=263.36 Aligned_cols=235 Identities=16% Similarity=0.083 Sum_probs=182.5
Q ss_pred CCCCCEEEEEcC--CCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 13 RLDGKTAIVTGS--NTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 13 ~~~gk~aLITGa--s~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.|+||++||||| ++|||+++|+.|+++|++|++++|+..++.+ .+.+. .+.+...++||++++++++.++
T Consensus 3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~~---~~~~~-----~~~~~~~~~~dv~~~~~~~~~~ 74 (268)
T d2h7ma1 3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQ---RITDR-----LPAKAPLLELDVQNEEHLASLA 74 (268)
T ss_dssp TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHHH---HHHTT-----SSSCCCEEECCTTCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHHH---HHHHH-----cCCceeeEeeeccccccccccc
Confidence 589999999994 5799999999999999999999999876533 23332 3667788999999999999999
Q ss_pred HHHHhc---CCCeeEEEEcCCCCCCC-------CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcc
Q psy13409 91 QEILDN---ESAIHLLINNAGVMMCP-------RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHT 160 (330)
Q Consensus 91 ~~i~~~---~g~iDvlInnAG~~~~~-------~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~ 160 (330)
+.+.+. ++.+|++|||+|..... .+.+.+++...+++|+.+.+...+.+.+.+.. +.+++++|....
T Consensus 75 ~~v~~~~~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~s~~~~ 151 (268)
T d2h7ma1 75 GRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNP---GGSIVGMDFDPS 151 (268)
T ss_dssp HHHHHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE---EEEEEEEECCCS
T ss_pred chhhhccccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhccc---cccccccccccc
Confidence 888664 57899999999976421 46778889999999999999888887765432 445555554544
Q ss_pred cCCCCCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCC
Q psy13409 161 WGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPT 240 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (330)
.+. +.+..|+++|+|+.+|++++|+|++
T Consensus 152 ~~~--------------p~~~~y~~sK~a~~~ltr~lA~e~~-------------------------------------- 179 (268)
T d2h7ma1 152 RAM--------------PAYNWMTVAKSALESVNRFVAREAG-------------------------------------- 179 (268)
T ss_dssp SCC--------------TTTHHHHHHHHHHHHHHHHHHHHHH--------------------------------------
T ss_pred ccC--------------cccchhhccccchhhccccchhhhh--------------------------------------
Confidence 443 6788999999999999999999999
Q ss_pred cccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhH------HH----HH--HhhhhhccChHHHHHHHHH
Q psy13409 241 NHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTA------WL----YQ--RVGGLFIKSPLQGAQTTLY 308 (330)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~------~~----~~--~~~~~~~~~~~e~a~~~~~ 308 (330)
+ .|||||+|+||+|+|++............ .. .. |+++ ++.+|+|+|++++|
T Consensus 180 ------------~---~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~r-r~~~p~dva~~v~f 243 (268)
T d2h7ma1 180 ------------K---YGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQRAPIGW-NMKDATPVAKTVCA 243 (268)
T ss_dssp ------------T---TTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHHHHHHHHCTTCC-CTTCCHHHHHHHHH
T ss_pred ------------c---cCCcceEEecCCCCChhhhhhccchhhhhhccchHHHHHHHHhcCCCCC-CCCCHHHHHHHHHH
Confidence 6 89999999999999998764433211111 11 11 2222 38899999999999
Q ss_pred hhccccccccCceecccCC
Q psy13409 309 CALDKKCERETGLYYAKAD 327 (330)
Q Consensus 309 l~~~~~~~~~~G~~~~~~~ 327 (330)
|+++ .++|+||+.|...+
T Consensus 244 L~Sd-~a~~iTG~~i~vDG 261 (268)
T d2h7ma1 244 LLSD-WLPATTGDIIYADG 261 (268)
T ss_dssp HHSS-SCTTCCSEEEEEST
T ss_pred HhCc-hhcCccCCEEEECc
Confidence 9965 77899999886543
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=100.00 E-value=3e-32 Score=246.17 Aligned_cols=226 Identities=17% Similarity=0.109 Sum_probs=161.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh-
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD- 95 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~- 95 (330)
|+||||||++|||+++|++|+++|++|++++|+..+ ..+|+++++.......++..
T Consensus 2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~-----------------------~~~d~~~~~~~~~~~~~~~~~ 58 (257)
T d1fjha_ 2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAE-----------------------VIADLSTAEGRKQAIADVLAK 58 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSS-----------------------EECCTTSHHHHHHHHHHHHTT
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHH-----------------------HHHHhcCHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999997531 35799999888877666554
Q ss_pred cCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc------
Q psy13409 96 NESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE------ 169 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~------ 169 (330)
..+.+|++|||||+.. ..+.+.....+|..+...+.+..++.+.+.....+.++++.............
T Consensus 59 ~~~~id~lv~~Ag~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (257)
T d1fjha_ 59 CSKGMDGLVLCAGLGP-----QTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEA 133 (257)
T ss_dssp CTTCCSEEEECCCCCT-----TCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHH
T ss_pred hCCCCcEEEEcCCCCC-----cHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcceeeeeccccchhhhhhhhhhhccC
Confidence 4568999999999764 34567788899999999999999998888777777777665433211000000
Q ss_pred --------ccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCc
Q psy13409 170 --------DINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTN 241 (330)
Q Consensus 170 --------~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (330)
-.......+...+|++||+|+++|+|+||.||+
T Consensus 134 g~~~~i~s~~~~~~~~~~~~~Y~asKaal~~ltr~lA~el~--------------------------------------- 174 (257)
T d1fjha_ 134 GEEAKARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWG--------------------------------------- 174 (257)
T ss_dssp TCHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHH---------------------------------------
T ss_pred CcEEEEeeehhccCCCcchHHHHHHhhhhhccccccccccc---------------------------------------
Confidence 000000123456799999999999999999999
Q ss_pred ccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHH---HHhhhhhccChHHHHHHHHHhhcccccccc
Q psy13409 242 HYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLY---QRVGGLFIKSPLQGAQTTLYCALDKKCERE 318 (330)
Q Consensus 242 ~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~e~a~~~~~l~~~~~~~~~ 318 (330)
+ .|||||+|+||+|+|++.+.........+... .|++| +.+|+|+|++++||+++ +++|+
T Consensus 175 -----------~---~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~PlgR--~g~p~eva~~v~fL~S~-~s~~i 237 (257)
T d1fjha_ 175 -----------E---AGVRLNTIAPGATETPLLQAGLQDPRYGESIAKFVPPMGR--RAEPSEMASVIAFLMSP-AASYV 237 (257)
T ss_dssp -----------H---TTCEEEEEEECC---------------------CCCSTTS--CCCTHHHHHHHHHHTSG-GGTTC
T ss_pred -----------c---ccccccccccCCcCChhHHhhcCCHHHHHHHHhcCCCCCC--CcCHHHHHHHHHHHhCc-hhCCc
Confidence 6 89999999999999999876655443333322 36676 99999999999999966 68899
Q ss_pred CceecccC
Q psy13409 319 TGLYYAKA 326 (330)
Q Consensus 319 ~G~~~~~~ 326 (330)
||+.|.-.
T Consensus 238 tG~~i~vD 245 (257)
T d1fjha_ 238 HGAQIVID 245 (257)
T ss_dssp CSCEEEES
T ss_pred cCceEEeC
Confidence 99988654
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=99.95 E-value=7e-28 Score=218.35 Aligned_cols=212 Identities=19% Similarity=0.185 Sum_probs=164.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecCh---hHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSL---EKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~---~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.++++|||||++|||++++++|+++|+ +|++++|+. +..++..++++. .+.++.++.||++|++++++++
T Consensus 8 p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~------~g~~v~~~~~Dv~d~~~~~~~~ 81 (259)
T d2fr1a1 8 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEA------LGARTTVAACDVTDRESVRELL 81 (259)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHH------TTCEEEEEECCTTCHHHHHHHH
T ss_pred CcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHh------ccccccccccccchHHHHHHhh
Confidence 467999999999999999999999999 699999974 345556666654 3789999999999999999999
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCC--CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc
Q psy13409 91 QEILDNESAIHLLINNAGVMMCP--RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~--~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~ 168 (330)
+.+.+. +.+|.+|||+|..... .+.+.++|+..+++|+.+++++.+. +...+.++||++||.++..+.
T Consensus 82 ~~i~~~-~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~----~~~~~~~~iv~~SS~a~~~g~----- 151 (259)
T d2fr1a1 82 GGIGDD-VPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHEL----TRELDLTAFVLFSSFASAFGA----- 151 (259)
T ss_dssp HTSCTT-SCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHH----HTTSCCSEEEEEEEHHHHTCC-----
T ss_pred cccccc-ccccccccccccccccccccccHHHHHHHhhhhccchhHHHHH----hhccCCceEeeecchhhccCC-----
Confidence 987654 5899999999987654 6789999999999999998887665 344567899999999999886
Q ss_pred cccccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccc
Q psy13409 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
++...|+++|+++++|++.++
T Consensus 152 ---------~~~~~YaAaka~l~~la~~~~-------------------------------------------------- 172 (259)
T d2fr1a1 152 ---------PGLGGYAPGNAYLDGLAQQRR-------------------------------------------------- 172 (259)
T ss_dssp ---------TTCTTTHHHHHHHHHHHHHHH--------------------------------------------------
T ss_pred ---------cccHHHHHHHHhHHHHHHHHH--------------------------------------------------
Confidence 788999999999988766554
Q ss_pred cCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhcccc
Q psy13409 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKK 314 (330)
Q Consensus 249 ~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~ 314 (330)
. .||++++|+||.+.+........ .+. ....|. ...+|+++++.+..++..+.
T Consensus 173 ----~---~Gi~v~~I~pg~~~~~g~~~~~~----~~~-~~~~G~-~~~~~~~~~~~l~~~l~~~~ 225 (259)
T d2fr1a1 173 ----S---DGLPATAVAWGTWAGSGMAEGPV----ADR-FRRHGV-IEMPPETACRALQNALDRAE 225 (259)
T ss_dssp ----H---TTCCCEEEEECCBC-----------------CTTTTE-ECBCHHHHHHHHHHHHHTTC
T ss_pred ----h---CCCCEEECCCCcccCCccccchH----HHH-HHhcCC-CCCCHHHHHHHHHHHHhCCC
Confidence 2 68999999999886543221110 011 111121 25689999999999886543
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=1.6e-18 Score=162.91 Aligned_cols=172 Identities=16% Similarity=0.113 Sum_probs=122.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHH--HHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKA--ETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l--~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
|+||||||+|.||.+++++|++.|++|++++|..... ++. +.+... ......++.++.+|++|.++++++++..
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~Dl~d~~~~~~~~~~~- 77 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERV-DHIYQD--PHTCNPKFHLHYGDLSDTSNLTRILREV- 77 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC------------------------CCEEECCCCSSCHHHHHHHHHHH-
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhH-HHHHhh--hhhcCCCeEEEEeecCCHHHHHHHHhcc-
Confidence 8999999999999999999999999999999964321 111 111110 0113568999999999999999998875
Q ss_pred hcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccc
Q psy13409 95 DNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLE 174 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~ 174 (330)
.+|++||+|+..... .+.++....+++|+.|+.+++.++...-. ++..++|++||.. .+|.+ ...++++.
T Consensus 78 ----~~d~v~h~aa~~~~~--~~~~~~~~~~~~Nv~gt~nllea~~~~~~-~~~~r~i~~SS~~-vYG~~--~~~~~~E~ 147 (357)
T d1db3a_ 78 ----QPDEVYNLGAMSHVA--VSFESPEYTADVDAMGTLRLLEAIRFLGL-EKKTRFYQASTSE-LYGLV--QEIPQKET 147 (357)
T ss_dssp ----CCSEEEECCCCCTTT--TTTSCHHHHHHHHTHHHHHHHHHHHHTTC-TTTCEEEEEEEGG-GGTTC--CSSSBCTT
T ss_pred ----CCCEEEEeecccccc--hhhhCHHHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEEchh-hhCCC--CCCCcCCC
Confidence 689999999986543 23456677889999998888777644321 2245799999854 55532 23355666
Q ss_pred cCCCcchhhHHhHHHHHHHHHHHHHHhc
Q psy13409 175 KGYSATGAYGRSKLANILFTTELAKRLQ 202 (330)
Q Consensus 175 ~~~~~~~~Y~asK~a~~~~~~~la~~~~ 202 (330)
.+..+...|+.||.+.+.+++.+++.++
T Consensus 148 ~~~~P~~~Y~~sK~~~E~~~~~~~~~~~ 175 (357)
T d1db3a_ 148 TPFYPRSPYAVAKLYAYWITVNYRESYG 175 (357)
T ss_dssp SCCCCCSHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHhC
Confidence 6666778999999999999999887643
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=99.76 E-value=2.7e-17 Score=153.30 Aligned_cols=227 Identities=14% Similarity=0.068 Sum_probs=153.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
--+||+||||||+|.||.+++++|+++|++|+++.|+.++...+.+...... .......+..|+++.++++.++
T Consensus 8 ~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~-- 81 (342)
T d1y1pa1 8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKY----PGRFETAVVEDMLKQGAYDEVI-- 81 (342)
T ss_dssp SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHS----TTTEEEEECSCTTSTTTTTTTT--
T ss_pred CCCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccc----cccccEEEeccccchhhhhhhc--
Confidence 3479999999999999999999999999999999999877666554433221 3455667889999988766554
Q ss_pred HHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhh-CCCeEEEEcCCCcccCCCCCcccc-
Q psy13409 93 ILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKS-APARIINLSSLAHTWGDGSMHFED- 170 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~-~~g~IV~iSS~~~~~~~~~~~~~~- 170 (330)
...|.++|+++..... ......+.+|+.++.++++.+ .+. +-.++|++||..+..+. .+....
T Consensus 82 -----~~~~~v~~~a~~~~~~-----~~~~~~~~~nv~gt~~ll~~~----~~~~~v~~~i~~SS~~~~~~~-~~~~~~~ 146 (342)
T d1y1pa1 82 -----KGAAGVAHIASVVSFS-----NKYDEVVTPAIGGTLNALRAA----AATPSVKRFVLTSSTVSALIP-KPNVEGI 146 (342)
T ss_dssp -----TTCSEEEECCCCCSCC-----SCHHHHHHHHHHHHHHHHHHH----HTCTTCCEEEEECCGGGTCCC-CTTCCCC
T ss_pred -----ccchhhhhhccccccc-----ccccccccchhhhHHHHHHhh----hcccccccccccccceeeccC-CCCCCCc
Confidence 3479999999875421 234456778999977666654 333 35799999997654432 111111
Q ss_pred -----------------cccccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhc
Q psy13409 171 -----------------INLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCD 233 (330)
Q Consensus 171 -----------------~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (330)
+....+..+..+|+.+|.+.+.++..++++.+
T Consensus 147 ~~~e~~~~~~~~~~~~~~~e~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~------------------------------- 195 (342)
T d1y1pa1 147 YLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENK------------------------------- 195 (342)
T ss_dssp EECTTCCCHHHHHHHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHC-------------------------------
T ss_pred cccccccccccccccccccccCCCCCcCcccchhHhHHHHHHHhhhhcc-------------------------------
Confidence 12222334566899999999999999998876
Q ss_pred ccCCCCCcccccccccCCCCCCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHh-----------hhhhccChHHH
Q psy13409 234 ANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRV-----------GGLFIKSPLQG 302 (330)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~e~ 302 (330)
.++++.+|+|+.|-.+.............+....+ +...+..++|+
T Consensus 196 -----------------------~~~~~~~i~p~~v~Gp~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~v~v~Dv 252 (342)
T d1y1pa1 196 -----------------------PHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALMPPQYYVSAVDI 252 (342)
T ss_dssp -----------------------CSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHHHHTCCSEEEEEHHHH
T ss_pred -----------------------cccccceecccceeCCCCCccccccchHHHHHHHHcCCcCcccCCccceeeeeHHHH
Confidence 67888999999887764332222111112221111 11115678999
Q ss_pred HHHHHHhhcccc
Q psy13409 303 AQTTLYCALDKK 314 (330)
Q Consensus 303 a~~~~~l~~~~~ 314 (330)
|++++.++..+.
T Consensus 253 a~~~i~~l~~~~ 264 (342)
T d1y1pa1 253 GLLHLGCLVLPQ 264 (342)
T ss_dssp HHHHHHHHHCTT
T ss_pred HHHHHHhhcCcc
Confidence 999888876543
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=99.72 E-value=1.4e-19 Score=156.48 Aligned_cols=155 Identities=17% Similarity=0.187 Sum_probs=113.4
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
..+|+||+++||||++|||+++++.|+++|++|++++|+.+++++..+.+.... ++....+|+++.+++++++
T Consensus 18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~d~~~~~~~~~~~ 90 (191)
T d1luaa1 18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRF-------KVNVTAAETADDASRAEAV 90 (191)
T ss_dssp TSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH-------TCCCEEEECCSHHHHHHHT
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhcc-------chhhhhhhcccHHHHHHHh
Confidence 458999999999999999999999999999999999999999999988887642 3456889999998887664
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 91 QEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
+.+|+||||||... ...+.++|+..+++|+.+.++.+..+...+.... .....+++.... +.
T Consensus 91 -------~~iDilin~Ag~g~--~~~~~e~~~~~~~~nv~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-g~------- 152 (191)
T d1luaa1 91 -------KGAHFVFTAGAIGL--ELLPQAAWQNESSIEIVADYNAQPPLGIGGIDAT-DKGKEYGGKRAF-GA------- 152 (191)
T ss_dssp -------TTCSEEEECCCTTC--CCBCHHHHHTCTTCCEEEECCCSSSCSBTTCCTT-CEEEEETTEEEE-CH-------
T ss_pred -------cCcCeeeecCcccc--ccCCHHHHHhhhcceeehhHhhHHHHHHHhhhhc-cCcEEecceEEE-ec-------
Confidence 56899999999743 4567889999999888776665444333222211 222222322211 10
Q ss_pred cccccCCCcchhhHHhHHHHHHHHH
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTT 195 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~ 195 (330)
. ..+...|+++|+++..+++
T Consensus 153 ~-----~~g~~~y~~sk~a~~~l~~ 172 (191)
T d1luaa1 153 L-----GIGGLKLKLHRACIAKLFE 172 (191)
T ss_dssp H-----HHHHHHHHHHHHHHHHHTS
T ss_pred c-----CcCcHHHHHHHHHHHHHHh
Confidence 0 0233469999999988764
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.69 E-value=2.6e-15 Score=141.89 Aligned_cols=171 Identities=12% Similarity=0.135 Sum_probs=117.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhH----------------HHHHHHHHHHhhcccCCCCeEEEEEcc
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEK----------------AETAADDIRTSLKDVKDAGEVVIRQLD 79 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~----------------l~~~~~~l~~~~~~~~~~~~v~~i~~D 79 (330)
||+||||||+|.||.+++++|+++|+.|++++..... ..+....+... .+.++.++.+|
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~D 75 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKAL-----TGKSIELYVGD 75 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHH-----HCCCCEEEESC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhh-----cCCCcEEEEcc
Confidence 7899999999999999999999999999999732211 11122222222 25678999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCC-CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCC-eEEEEcCC
Q psy13409 80 LSSLKSVRKCAQEILDNESAIHLLINNAGVMMCP-RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPA-RIINLSSL 157 (330)
Q Consensus 80 ls~~~si~~l~~~i~~~~g~iDvlInnAG~~~~~-~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g-~IV~iSS~ 157 (330)
++|.+.++.+++.. ++|++||.|+..... ...+.+.....+.+|+.|+.+++..+.. .+.. .+++.||
T Consensus 76 l~d~~~l~~~~~~~-----~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~----~~~~~~~i~~ss- 145 (393)
T d1i24a_ 76 ICDFEFLAESFKSF-----EPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKE----FGEECHLVKLGT- 145 (393)
T ss_dssp TTSHHHHHHHHHHH-----CCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHH----HCTTCEEEEECC-
T ss_pred CCCHHHHHHHHHhh-----cchheeccccccccccccccccccccccccccccccHHHHHHHH----hccccceeeccc-
Confidence 99999999998875 689999999876543 3345566778899999998877776543 3334 4455554
Q ss_pred CcccCCCCCcc--------ccc---ccccCCCcchhhHHhHHHHHHHHHHHHHHh
Q psy13409 158 AHTWGDGSMHF--------EDI---NLEKGYSATGAYGRSKLANILFTTELAKRL 201 (330)
Q Consensus 158 ~~~~~~~~~~~--------~~~---~~~~~~~~~~~Y~asK~a~~~~~~~la~~~ 201 (330)
...++...... ++. +...+..+...|+.+|.+.+.++..+++++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~ 200 (393)
T d1i24a_ 146 MGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW 200 (393)
T ss_dssp GGGGCCCSSCBCSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccHHHHHhhhhccccccccccc
Confidence 44444221111 000 001123455689999999999999887764
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=5.2e-16 Score=143.78 Aligned_cols=170 Identities=15% Similarity=0.131 Sum_probs=119.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChh-----HHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLE-----KAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~-----~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
|+||||||+|.||.+++++|+++|++|++++|..+ +++........ ....++.++.+|++|.+.+..++.
T Consensus 2 KI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Dl~d~~~~~~~~~ 76 (347)
T d1t2aa_ 2 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQA-----HIEGNMKLHYGDLTDSTCLVKIIN 76 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC--------------CEEEEECCTTCHHHHHHHHH
T ss_pred CEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHhhchhh-----hccCCcEEEEeecCCchhhHHHHh
Confidence 34599999999999999999999999999999642 11111111111 124678999999999999999887
Q ss_pred HHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccc
Q psy13409 92 EILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDI 171 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~ 171 (330)
.. .+++++++++.... ....+.....+++|+.++.+++.++...-.. +..++|++||.+ .+|.+ ...++
T Consensus 77 ~~-----~~~~v~~~~a~~~~--~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~-~~~~~i~~SS~~-vyg~~--~~~~~ 145 (347)
T d1t2aa_ 77 EV-----KPTEIYNLGAQSHV--KISFDLAEYTADVDGVGTLRLLDAVKTCGLI-NSVKFYQASTSE-LYGKV--QEIPQ 145 (347)
T ss_dssp HH-----CCSEEEECCSCCCH--HHHHHSHHHHHHHHTHHHHHHHHHHHHTTCT-TTCEEEEEEEGG-GTCSC--SSSSB
T ss_pred hc-----ccceeeeeeecccc--chhhccchhhhhhHHHHHHHHHHHHHHcCCC-CCcEEEEecchh-eecCC--CCCCC
Confidence 75 67888888886532 1233445567899999988887776543221 235799998854 55532 22345
Q ss_pred ccccCCCcchhhHHhHHHHHHHHHHHHHHhc
Q psy13409 172 NLEKGYSATGAYGRSKLANILFTTELAKRLQ 202 (330)
Q Consensus 172 ~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~ 202 (330)
++..++.+...|+.||.+.+.++..+++.++
T Consensus 146 ~E~~~~~P~~~Yg~sK~~aE~~~~~~~~~~~ 176 (347)
T d1t2aa_ 146 KETTPFYPRSPYGAAKLYAYWIVVNFREAYN 176 (347)
T ss_dssp CTTSCCCCCSHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 5566667788999999999999998877643
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.67 E-value=1.1e-15 Score=140.90 Aligned_cols=170 Identities=16% Similarity=0.118 Sum_probs=119.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChh-----HHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLE-----KAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~-----~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.|+||||||+|.||++++++|+++|++|++++|..+ ++..+...... .....+.++.+|+++.++++..+
T Consensus 1 ~k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Di~~~~~~~~~~ 75 (339)
T d1n7ha_ 1 RKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHN-----VNKALMKLHYADLTDASSLRRWI 75 (339)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC-------------CCEEEEECCTTCHHHHHHHH
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCcccchhhhhhhhhhhhh-----ccccceEEEEccccCHHHHHHHH
Confidence 389999999999999999999999999999998532 21111111111 13567889999999999998887
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCC-CeEEEEcCCCcccCCCCCccc
Q psy13409 91 QEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAP-ARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~-g~IV~iSS~~~~~~~~~~~~~ 169 (330)
+.. .+|++||+|+.... ....+.....+.+|+.+...++.++......... .+++..||. ...+. ...
T Consensus 76 ~~~-----~~D~Vih~Aa~~~~--~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~-~~~~~---~~~ 144 (339)
T d1n7ha_ 76 DVI-----KPDEVYNLAAQSHV--AVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSS-EMFGS---TPP 144 (339)
T ss_dssp HHH-----CCSEEEECCSCCCH--HHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEG-GGGTT---SCS
T ss_pred hhh-----ccchhhhccccccc--cccccCccccccccccccchhhhhhhhcccccccceeeeecccc-eeccc---CCC
Confidence 764 78999999997532 2233556678899999999988888766555433 344444443 33332 122
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHh
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRL 201 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~ 201 (330)
+.++..+..+...|+.+|.+.+.++..+++..
T Consensus 145 ~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~ 176 (339)
T d1n7ha_ 145 PQSETTPFHPRSPYAASKCAAHWYTVNYREAY 176 (339)
T ss_dssp SBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHh
Confidence 34445556678899999999999988887653
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=99.67 E-value=7.7e-16 Score=142.94 Aligned_cols=167 Identities=18% Similarity=0.120 Sum_probs=118.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
++||||||+|.||.++++.|+++|++|++++|............... ...++.++++|++|.+.+.++++..
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~d~~~l~~~~~~~--- 72 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERL-----GGKHPTFVEGDIRNEALMTEILHDH--- 72 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHH-----HTSCCEEEECCTTCHHHHHHHHHHT---
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhh-----cCCCCEEEEeecCCHHHHHHHHhcc---
Confidence 46999999999999999999999999999987332211111111111 2467899999999999988887753
Q ss_pred CCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccccC
Q psy13409 97 ESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKG 176 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~ 176 (330)
.+|++||+|+.... ..+.++....+++|+.|+.++++++.. .+-.++|++||.....+. ......+....
T Consensus 73 --~~d~ViHlAa~~~~--~~~~~~~~~~~~~Nv~gt~nlL~~~~~----~~v~~~i~~Ss~~vy~~~--~~~~~~e~~~~ 142 (338)
T d1udca_ 73 --AIDTVIHFAGLKAV--GESVQKPLEYYDNNVNGTLRLISAMRA----ANVKNFIFSSSATVYGDQ--PKIPYVESFPT 142 (338)
T ss_dssp --TCSEEEECCSCCCH--HHHHHCHHHHHHHHHHHHHHHHHHHHH----HTCCEEEEEEEGGGGCSC--CSSSBCTTSCC
T ss_pred --CCCEEEECCCccch--hhHHhCHHHHHHhHHHHHHHHHHHHHH----hCCCEEEecCcceEEccc--ccccccccccc
Confidence 58999999996532 123345567899999998887776644 445789999886643332 22222233334
Q ss_pred CCcchhhHHhHHHHHHHHHHHHHHh
Q psy13409 177 YSATGAYGRSKLANILFTTELAKRL 201 (330)
Q Consensus 177 ~~~~~~Y~asK~a~~~~~~~la~~~ 201 (330)
..+...|+.+|.+.+.+++..+.+.
T Consensus 143 ~~p~~~Y~~sK~~~e~~~~~~~~~~ 167 (338)
T d1udca_ 143 GTPQSPYGKSKLMVEQILTDLQKAQ 167 (338)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCcchHHHHHhhhhHHHHHHHhhc
Confidence 4567789999999999998877764
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.66 E-value=5.6e-16 Score=144.29 Aligned_cols=170 Identities=20% Similarity=0.170 Sum_probs=121.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
|+||||||+|.||.+++++|+++|++|+++++............... ...++.++.+|++|.++++.++...
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~-----~~~~v~~~~~Dl~d~~~l~~~~~~~--- 73 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVL-----TKHHIPFYEVDLCDRKGLEKVFKEY--- 73 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHH-----HTSCCCEEECCTTCHHHHHHHHHHS---
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhHHhh-----cccCCeEEEeecCCHHHHHHHHhcc---
Confidence 78999999999999999999999999999976432111111111111 2457889999999999998887653
Q ss_pred CCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCC-CCccccccccc
Q psy13409 97 ESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDG-SMHFEDINLEK 175 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~-~~~~~~~~~~~ 175 (330)
.+|++||+|+...... ..+.......+|+.+..+++.++.. .+..++|++||........ .+..++++...
T Consensus 74 --~~d~VihlAa~~~~~~--~~~~~~~~~~~N~~~t~~ll~~~~~----~~i~~~i~~SS~~vyg~~~~~~~~~~~~e~~ 145 (347)
T d1z45a2 74 --KIDSVIHFAGLKAVGE--STQIPLRYYHNNILGTVVLLELMQQ----YNVSKFVFSSSATVYGDATRFPNMIPIPEEC 145 (347)
T ss_dssp --CCCEEEECCSCCCHHH--HHHSHHHHHHHHHHHHHHHHHHHHH----HTCCEEEEEEEGGGGCCGGGSTTCCSBCTTS
T ss_pred --CCCEEEEccccccccc--cccCcccccccchhhhHHHHHHHHh----cccceEEeecceeeecCcccCCCCCcccccc
Confidence 6899999999764221 2234456778999998888777643 4456899999976433221 12234555555
Q ss_pred CCCcchhhHHhHHHHHHHHHHHHHHhc
Q psy13409 176 GYSATGAYGRSKLANILFTTELAKRLQ 202 (330)
Q Consensus 176 ~~~~~~~Y~asK~a~~~~~~~la~~~~ 202 (330)
+..+...|+.+|.+.+.+++.+.+...
T Consensus 146 ~~~p~~~Y~~sK~~~E~~~~~~~~~~~ 172 (347)
T d1z45a2 146 PLGPTNPYGHTKYAIENILNDLYNSDK 172 (347)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHST
T ss_pred CCCCCChhHhHHHHHHHHHHHHHHhhc
Confidence 666778899999999999998877644
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.64 E-value=2.8e-15 Score=137.27 Aligned_cols=166 Identities=17% Similarity=0.146 Sum_probs=117.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
|+||||||+|.||++++++|+++|++|+.++|...... ...++.. ....++.++.+|++|.+++.+.+...
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~--~~~l~~~----~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 71 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDT--RWRLREL----GIEGDIQYEDGDMADACSVQRAVIKA--- 71 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCC--CHHHHHT----TCGGGEEEEECCTTCHHHHHHHHHHH---
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCccc--HHHHHHh----cccCCcEEEEccccChHHhhhhhccc---
Confidence 78999999999999999999999999999998653211 0111111 13467999999999999988887765
Q ss_pred CCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCC-eEEEEcCCCcccCCCCCccccccccc
Q psy13409 97 ESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPA-RIINLSSLAHTWGDGSMHFEDINLEK 175 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g-~IV~iSS~~~~~~~~~~~~~~~~~~~ 175 (330)
..++++++++..... ...+.....+..|+.++.+++..+.. .+.. ++++.|| ...++.. ...+.++..
T Consensus 72 --~~~~~~~~a~~~~~~--~~~~~~~~~~~~n~~g~~~~l~~~~~----~~~~~~~i~~Ss-~~~~~~~--~~~~~~E~~ 140 (321)
T d1rpna_ 72 --QPQEVYNLAAQSFVG--ASWNQPVTTGVVDGLGVTHLLEAIRQ----FSPETRFYQAST-SEMFGLI--QAERQDENT 140 (321)
T ss_dssp --CCSEEEECCSCCCHH--HHTTSHHHHHHHHTHHHHHHHHHHHH----HCTTSEEEEEEE-GGGGCSC--SSSSBCTTS
T ss_pred --ccccccccccccccc--ccccchHHHHhhhhhchHHHHHHHHH----hCCCcccccccc-hhhcCcc--cCCCCCCCC
Confidence 567888888765322 12234567788999997777666543 4433 4555555 4455532 223344555
Q ss_pred CCCcchhhHHhHHHHHHHHHHHHHHhc
Q psy13409 176 GYSATGAYGRSKLANILFTTELAKRLQ 202 (330)
Q Consensus 176 ~~~~~~~Y~asK~a~~~~~~~la~~~~ 202 (330)
+..+...|+.+|.+.+.++..++.+.+
T Consensus 141 ~~~p~~~Y~~sK~~~E~~~~~~~~~~~ 167 (321)
T d1rpna_ 141 PFYPRSPYGVAKLYGHWITVNYRESFG 167 (321)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccccChhHHHHHHHHHHHHHHHhhcC
Confidence 667788999999999999998887654
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=99.63 E-value=2.4e-15 Score=141.30 Aligned_cols=171 Identities=13% Similarity=0.149 Sum_probs=119.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEE-EecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIM-ACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil-~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
++||||||+|.||.+++++|++.|+.|++ +++...... ... ........++.++.+|++|.++++.+++..
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~--~~~----~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~-- 72 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGN--LES----LSDISESNRYNFEHADICDSAEITRIFEQY-- 72 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCC--GGG----GTTTTTCTTEEEEECCTTCHHHHHHHHHHH--
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcccc--HHH----HHhhhhcCCcEEEEccCCCHHHHHHHHHhC--
Confidence 46999999999999999999999997544 554321100 001 111224568999999999999998888764
Q ss_pred cCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhh-----CCCeEEEEcCCCcccCCCCCc---
Q psy13409 96 NESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKS-----APARIINLSSLAHTWGDGSMH--- 167 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~-----~~g~IV~iSS~~~~~~~~~~~--- 167 (330)
.+|++||+|+.... ..+..+....+++|+.+..++++.+....... +..++|++||... +|.....
T Consensus 73 ---~~d~VihlAa~~~~--~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~v-yg~~~~~~~~ 146 (361)
T d1kewa_ 73 ---QPDAVMHLAAESHV--DRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEV-YGDLPHPDEV 146 (361)
T ss_dssp ---CCSEEEECCSCCCH--HHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGG-GCCCCCGGGS
T ss_pred ---CCCEEEECccccch--hhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEecccee-eCCCccCCcc
Confidence 68999999986532 12334556789999999999999888765432 2468999999653 4321111
Q ss_pred ----ccccc-cccCCCcchhhHHhHHHHHHHHHHHHHHh
Q psy13409 168 ----FEDIN-LEKGYSATGAYGRSKLANILFTTELAKRL 201 (330)
Q Consensus 168 ----~~~~~-~~~~~~~~~~Y~asK~a~~~~~~~la~~~ 201 (330)
..+.. ...+..+...|+.||.+.+.++..++..+
T Consensus 147 ~~~~~~~~~~e~~~~~p~s~Yg~sK~~~E~~~~~~~~~~ 185 (361)
T d1kewa_ 147 ENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTY 185 (361)
T ss_dssp CTTSCCCCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 01111 22334566789999999999999998764
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=2.9e-15 Score=129.77 Aligned_cols=193 Identities=12% Similarity=0.077 Sum_probs=126.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
|..|+|+||||+|+||++++++|+++|++|+++.|+.+++... ...++.++.+|++|.++++++++
T Consensus 1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~------------~~~~~~~~~gD~~d~~~l~~al~-- 66 (205)
T d1hdoa_ 1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE------------GPRPAHVVVGDVLQAADVDKTVA-- 66 (205)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS------------SCCCSEEEESCTTSHHHHHHHHT--
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccc------------cccccccccccccchhhHHHHhc--
Confidence 4678999999999999999999999999999999998764211 24567889999999998877764
Q ss_pred HhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccccc
Q psy13409 94 LDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINL 173 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~ 173 (330)
..|++|+++|...+... . +++..+ .+.+++.+++.+-.++|++||.......
T Consensus 67 -----~~d~vi~~~g~~~~~~~---~------~~~~~~----~~~l~~aa~~~~v~r~i~~ss~~~~~~~---------- 118 (205)
T d1hdoa_ 67 -----GQDAVIVLLGTRNDLSP---T------TVMSEG----ARNIVAAMKAHGVDKVVACTSAFLLWDP---------- 118 (205)
T ss_dssp -----TCSEEEECCCCTTCCSC---C------CHHHHH----HHHHHHHHHHHTCCEEEEECCGGGTSCT----------
T ss_pred -----CCCEEEEEeccCCchhh---h------hhhHHH----HHHHHHHHHhcCCCeEEEEeeeeccCCC----------
Confidence 36999999997543211 1 123334 3444555667777899999986543221
Q ss_pred ccCCCcchhhHHhHHHHHHHHHHHHHHhcccccccccccCchhhcccccccchhhhhhhcccCCCCCcccccccccCCCC
Q psy13409 174 EKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPG 253 (330)
Q Consensus 174 ~~~~~~~~~Y~asK~a~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (330)
...++....|...|...+.+. + .
T Consensus 119 ~~~~~~~~~~~~~~~~~e~~l-------~--------------------------------------------------~ 141 (205)
T d1hdoa_ 119 TKVPPRLQAVTDDHIRMHKVL-------R--------------------------------------------------E 141 (205)
T ss_dssp TCSCGGGHHHHHHHHHHHHHH-------H--------------------------------------------------H
T ss_pred ccccccccccchHHHHHHHHH-------H--------------------------------------------------h
Confidence 011233345666665544322 2 2
Q ss_pred CCCCceeEEEeeCcccccCcccccCCCchhhHHHHHHhhhhhccChHHHHHHHHHhhcccc
Q psy13409 254 ANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCALDKK 314 (330)
Q Consensus 254 ~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~~~~l~~~~~ 314 (330)
.+++...|.||++............. .......+.+.+|+|+.++.++..++
T Consensus 142 ---~~~~~tiirp~~~~~~~~~~~~~~~~------~~~~~~~~i~~~DvA~~~~~~l~~~~ 193 (205)
T d1hdoa_ 142 ---SGLKYVAVMPPHIGDQPLTGAYTVTL------DGRGPSRVISKHDLGHFMLRCLTTDE 193 (205)
T ss_dssp ---TCSEEEEECCSEEECCCCCSCCEEES------SSCSSCSEEEHHHHHHHHHHTTSCST
T ss_pred ---cCCceEEEecceecCCCCcccEEEee------CCCCCCCcCCHHHHHHHHHHHhCCCC
Confidence 57888889999874432211100000 01111225789999999999997654
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=99.60 E-value=1.2e-14 Score=134.69 Aligned_cols=170 Identities=14% Similarity=0.099 Sum_probs=122.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
.+||+||||||+|.||.++++.|+++|++|++++|+........+... ....+.++.+|++|.+++..+++..
T Consensus 6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~-------~~~~i~~~~~Dl~d~~~l~~~~~~~ 78 (356)
T d1rkxa_ 6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETAR-------VADGMQSEIGDIRDQNKLLESIREF 78 (356)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTT-------TTTTSEEEECCTTCHHHHHHHHHHH
T ss_pred hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhh-------cccCCeEEEeeccChHhhhhhhhhc
Confidence 479999999999999999999999999999999998754333322211 2456889999999999988887765
Q ss_pred HhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccccc
Q psy13409 94 LDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINL 173 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~ 173 (330)
.+|+++|+|+.... ..+.+.....+++|+.+..+++.++.. .+...+++.+|....... .....+.+.
T Consensus 79 -----~~~~v~~~aa~~~~--~~~~~~~~~~~~~Nv~g~~n~l~~~~~----~~~~~~~~~~s~~~~~~~-~~~~~~~~~ 146 (356)
T d1rkxa_ 79 -----QPEIVFHMAAQPLV--RLSYSEPVETYSTNVMGTVYLLEAIRH----VGGVKAVVNITSDKCYDN-KEWIWGYRE 146 (356)
T ss_dssp -----CCSEEEECCSCCCH--HHHHHCHHHHHHHHTHHHHHHHHHHHH----HCCCCEEEEECCGGGBCC-CCSSSCBCT
T ss_pred -----hhhhhhhhhccccc--cccccCCccccccccccchhhhhhhhc----cccccccccccccccccc-ccccccccc
Confidence 68999999986532 223455677888999997777766544 333444444444433332 222233344
Q ss_pred ccCCCcchhhHHhHHHHHHHHHHHHHHhc
Q psy13409 174 EKGYSATGAYGRSKLANILFTTELAKRLQ 202 (330)
Q Consensus 174 ~~~~~~~~~Y~asK~a~~~~~~~la~~~~ 202 (330)
..+..+...|+.+|.+.+.+++.++.++.
T Consensus 147 ~~~~~p~~~y~~~k~~~e~~~~~~~~~~~ 175 (356)
T d1rkxa_ 147 NEAMGGYDPYSNSKGCAELVTSSYRNSFF 175 (356)
T ss_dssp TSCBCCSSHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccccCCCCccccccccchhhhhHHhhhcc
Confidence 44555677899999999999999988765
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.59 E-value=4.2e-14 Score=130.89 Aligned_cols=167 Identities=14% Similarity=0.087 Sum_probs=118.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChh----HHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLE----KAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~----~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
.+-|++|||||+|.||.+++++|.+.|++|++++|... ............ ...++.++.+|+.|.......
T Consensus 14 ~~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~~d~~~~~~~ 88 (341)
T d1sb8a_ 14 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEK-----QWSNFKFIQGDIRNLDDCNNA 88 (341)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHH-----HHTTEEEEECCTTSHHHHHHH
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHHhhhhc-----ccCCeeEEeeccccccccccc
Confidence 35589999999999999999999999999999987322 222221111111 235688999999998765544
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccc
Q psy13409 90 AQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFE 169 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~ 169 (330)
. ...+.++|.++.... ..+.++....+++|+.|..+++..+.. .+..++|++||... +|... ..
T Consensus 89 ~-------~~~~~v~~~~a~~~~--~~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~~i~~SS~~v-yg~~~--~~ 152 (341)
T d1sb8a_ 89 C-------AGVDYVLHQAALGSV--PRSINDPITSNATNIDGFLNMLIAARD----AKVQSFTYAASSST-YGDHP--GL 152 (341)
T ss_dssp H-------TTCSEEEECCSCCCH--HHHHHCHHHHHHHHTHHHHHHHHHHHH----TTCSEEEEEEEGGG-GTTCC--CS
T ss_pred c-------ccccccccccccccc--cccccCccchhheeehhHHHHHHHHHh----cCCceEEEccccee-eCCCC--CC
Confidence 3 246888888875432 124566677899999998888776643 44569999999764 44321 22
Q ss_pred ccccccCCCcchhhHHhHHHHHHHHHHHHHHh
Q psy13409 170 DINLEKGYSATGAYGRSKLANILFTTELAKRL 201 (330)
Q Consensus 170 ~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~ 201 (330)
++++..+..+...|+.+|.+.+.+++.+++..
T Consensus 153 ~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~ 184 (341)
T d1sb8a_ 153 PKVEDTIGKPLSPYAVTKYVNELYADVFSRCY 184 (341)
T ss_dssp SBCTTCCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCCCCCCCCcchHHHHHHHHHHHHHHHHh
Confidence 35555566677899999999999999888753
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=99.57 E-value=1.2e-13 Score=126.37 Aligned_cols=167 Identities=17% Similarity=0.110 Sum_probs=118.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhH-HHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRGARVIMACRSLEK-AETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~-l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
+||||||+|.||.+++++|+++|++|+++++-... ..+..+.+. ...++.++.+|+++.++++++++..
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~-------~~~~~~~i~~Di~~~~~l~~~~~~~--- 71 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLS-------SLGNFEFVHGDIRNKNDVTRLITKY--- 71 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHH-------TTCCCEEEECCTTCHHHHHHHHHHH---
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhh-------ccCCcEEEEcccCCHHHHHHHHHhc---
Confidence 68999999999999999999999999998753211 111222222 2467899999999999999888765
Q ss_pred CCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc--------
Q psy13409 97 ESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF-------- 168 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~-------- 168 (330)
.+|++||+|+..... ...++....+++|+.|+.++++++. +.+..+.|++||.....+......
T Consensus 72 --~~d~Vih~aa~~~~~--~~~~~~~~~~~~Nv~gt~nll~~~~----~~~~~~~i~~sS~~~~~~~~~~~~~~~~~~~~ 143 (338)
T d1orra_ 72 --MPDSCFHLAGQVAMT--TSIDNPCMDFEINVGGTLNLLEAVR----QYNSNCNIIYSSTNKVYGDLEQYKYNETETRY 143 (338)
T ss_dssp --CCSEEEECCCCCCHH--HHHHCHHHHHHHHHHHHHHHHHHHH----HHCTTCEEEEEEEGGGGTTCTTSCEEECSSCE
T ss_pred --CCceEEeeccccccc--ccccChHHHHHHHHHHHHHHHHhhh----cccccccccccccccccccccccccccccccc
Confidence 689999999876422 2234557788999999887776653 345566677777665554321110
Q ss_pred ------cccccccCCCcchhhHHhHHHHHHHHHHHHHHhc
Q psy13409 169 ------EDINLEKGYSATGAYGRSKLANILFTTELAKRLQ 202 (330)
Q Consensus 169 ------~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~ 202 (330)
..........+...|+.+|...+.+....+..+.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~y~~~k~~~e~~~~~~~~~~~ 183 (338)
T d1orra_ 144 TCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARIFG 183 (338)
T ss_dssp EETTCTTCBCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccccCcccCCccccccccccccchhhhhhhhhhhccC
Confidence 1111223345678899999999999988888765
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=99.57 E-value=6.4e-14 Score=129.45 Aligned_cols=162 Identities=10% Similarity=-0.047 Sum_probs=111.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
++||||||+|.||++++++|+++|+ +|+++++......+. ....++.++.+|+++.+++.+.+.+
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~-----------~~~~~~~~i~~Di~~~~~~~~~~~~--- 66 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRF-----------LNHPHFHFVEGDISIHSEWIEYHVK--- 66 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGG-----------TTCTTEEEEECCTTTCSHHHHHHHH---
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhh-----------ccCCCeEEEECccCChHHHHHHHHh---
Confidence 4699999999999999999999994 899998865432221 1356899999999987765553321
Q ss_pred cCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc----ccc
Q psy13409 96 NESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF----EDI 171 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~----~~~ 171 (330)
.+|++||+|+..... ...++....+.+|+.+..+++..+.. . +.+.+++||.....+...... ...
T Consensus 67 ---~~d~Vih~a~~~~~~--~~~~~~~~~~~~nv~gt~~ll~~~~~----~-~~~~~~~ss~~~~~~~~~~~~~~~~~~~ 136 (342)
T d2blla1 67 ---KCDVVLPLVAIATPI--EYTRNPLRVFELDFEENLRIIRYCVK----Y-RKRIIFPSTSEVYGMCSDKYFDEDHSNL 136 (342)
T ss_dssp ---HCSEEEECBCCCCHH--HHHHSHHHHHHHHTHHHHHHHHHHHH----T-TCEEEEECCGGGGBTCCCSSBCTTTCCC
T ss_pred ---CCCcccccccccccc--ccccCCcccccccccccccccccccc----c-cccccccccccccccccccccccccccc
Confidence 379999999976432 12244456788999998888777533 2 356677776554333222111 111
Q ss_pred ccccCCCcchhhHHhHHHHHHHHHHHHHHhc
Q psy13409 172 NLEKGYSATGAYGRSKLANILFTTELAKRLQ 202 (330)
Q Consensus 172 ~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~ 202 (330)
.......+...|+.||.+.+.+++.+++.++
T Consensus 137 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~ 167 (342)
T d2blla1 137 IVGPVNKPRWIYSVSKQLLDRVIWAYGEKEG 167 (342)
T ss_dssp BCCCTTCGGGHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccCCCcchhhhcccchhhhhhhhhcccC
Confidence 1222334567899999999999999887643
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=5.9e-14 Score=128.90 Aligned_cols=159 Identities=16% Similarity=0.130 Sum_probs=106.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
.|+||||||+|.||.+++++|+++|++|++++|......+.... .....++.....|+.+.
T Consensus 1 kKKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~-------~~~~~~~d~~~~~~~~~------------ 61 (312)
T d2b69a1 1 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEH-------WIGHENFELINHDVVEP------------ 61 (312)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGG-------GTTCTTEEEEECCTTSC------------
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHHHH-------hcCCCceEEEehHHHHH------------
Confidence 37899999999999999999999999999998743211111111 11244566666666432
Q ss_pred cCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc--cc-cc
Q psy13409 96 NESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF--ED-IN 172 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~--~~-~~ 172 (330)
.+..+|++||+|+...... ...+..+.+++|+.+..++++++. +.+ .++|++||.+ .++.+.... ++ +.
T Consensus 62 ~~~~~d~VihlAa~~~~~~--~~~~~~~~~~~Nv~g~~~ll~~~~----~~~-~k~I~~SS~~-vy~~~~~~~~~e~~~~ 133 (312)
T d2b69a1 62 LYIEVDQIYHLASPASPPN--YMYNPIKTLKTNTIGTLNMLGLAK----RVG-ARLLLASTSE-VYGDPEVHPQSEDYWG 133 (312)
T ss_dssp CCCCCSEEEECCSCCSHHH--HTTCHHHHHHHHHHHHHHHHHHHH----HHT-CEEEEEEEGG-GGBSCSSSSBCTTCCC
T ss_pred HHcCCCEEEECcccCCchh--HHhCHHHHHHHHHHHHHHHHHHHH----HcC-CcEEEEEChh-eecCCCCCCCCccccC
Confidence 2346899999999764321 224556778999999888877653 333 5899999854 444322221 11 22
Q ss_pred cccCCCcchhhHHhHHHHHHHHHHHHHHh
Q psy13409 173 LEKGYSATGAYGRSKLANILFTTELAKRL 201 (330)
Q Consensus 173 ~~~~~~~~~~Y~asK~a~~~~~~~la~~~ 201 (330)
...+..+...|+.||.+.+.+++.+++++
T Consensus 134 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~ 162 (312)
T d2b69a1 134 HVNPIGPRACYDEGKRVAETMCYAYMKQE 162 (312)
T ss_dssp BCCSSSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHHHh
Confidence 22345567889999999999999888764
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=8e-14 Score=129.13 Aligned_cols=166 Identities=14% Similarity=0.099 Sum_probs=116.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecC------hhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRS------LEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~------~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
|+||||||+|.||.+++++|++.|+.|+++++. ........+.+... ...++.++.+|++|.++++..+
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~d~~~l~~~~ 77 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQEL-----TGRSVEFEEMDILDQGALQRLF 77 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHH-----HTCCCEEEECCTTCHHHHHHHH
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCccccccccchHHHHHHHHh-----cCCCcEEEEeeccccccccccc
Confidence 789999999999999999999999999998742 11111222222222 2568899999999999988877
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 91 QEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
.. ..+++++|+|+.... ..+..+..+.+++|+.+..+++.++ .+.+-.++|++||....... .....
T Consensus 78 ~~-----~~~~~i~h~Aa~~~~--~~~~~~p~~~~~~Nv~gt~~l~~~~----~~~~v~~~i~~ss~~~~~~~--~~~~~ 144 (346)
T d1ek6a_ 78 KK-----YSFMAVIHFAGLKAV--GESVQKPLDYYRVNLTGTIQLLEIM----KAHGVKNLVFSSSATVYGNP--QYLPL 144 (346)
T ss_dssp HH-----CCEEEEEECCSCCCH--HHHHHCHHHHHHHHHHHHHHHHHHH----HHTTCCEEEEEEEGGGGCSC--SSSSB
T ss_pred cc-----cccccccccccccCc--HhhHhCHHHHHHhhhcccccccchh----hhcCcccccccccceeeecc--ccccc
Confidence 65 368899999997542 2233445677899999977776664 34455688888886544332 12222
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHH
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKR 200 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~ 200 (330)
............|+.+|.+.+..++.+++.
T Consensus 145 ~~~~~~~~~~~~Y~~~k~~~e~~~~~~~~~ 174 (346)
T d1ek6a_ 145 DEAHPTGGCTNPYGKSKFFIEEMIRDLCQA 174 (346)
T ss_dssp CTTSCCCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccCChHHHHHHHHHHHHHHHHHh
Confidence 222223345568999999999998887764
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=99.53 E-value=1.8e-14 Score=133.81 Aligned_cols=164 Identities=18% Similarity=0.145 Sum_probs=109.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecC--hhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRS--LEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~--~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
-|+||||||+|.||.+++++|+++|+.|.++.++ ..... ...+.. ..+.++.++.+|++|.+.+..++.
T Consensus 2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~--~~~~~~-----~~~~~i~~~~~Di~d~~~~~~~~~-- 72 (346)
T d1oc2a_ 2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGN--KANLEA-----ILGDRVELVVGDIADAELVDKLAA-- 72 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCC--GGGTGG-----GCSSSEEEEECCTTCHHHHHHHHT--
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCcccc--HHHHHH-----hhcCCeEEEEccCCCHHHHHHHHh--
Confidence 4789999999999999999999999865444432 11000 000001 135689999999999988877753
Q ss_pred HhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCC---------
Q psy13409 94 LDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDG--------- 164 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~--------- 164 (330)
..+.++|.|+..... ....+....+++|+.+..+++..+.. . +.++|++||.. .++..
T Consensus 73 -----~~~~v~~~a~~~~~~--~~~~~~~~~~~~N~~g~~nll~~~~~----~-~~k~i~~ss~~-vyg~~~~~~~~~~~ 139 (346)
T d1oc2a_ 73 -----KADAIVHYAAESHND--NSLNDPSPFIHTNFIGTYTLLEAARK----Y-DIRFHHVSTDE-VYGDLPLREDLPGH 139 (346)
T ss_dssp -----TCSEEEECCSCCCHH--HHHHCCHHHHHHHTHHHHHHHHHHHH----H-TCEEEEEEEGG-GGCCBCCGGGSTTT
T ss_pred -----hhhhhhhhhhccccc--chhhCcccceeeehHhHHhhhhhhcc----c-cccccccccce-EecccCcccccccc
Confidence 357788998876432 12244567789999998888766533 2 25778887764 34321
Q ss_pred -CCcccccccccCCCcchhhHHhHHHHHHHHHHHHHHh
Q psy13409 165 -SMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRL 201 (330)
Q Consensus 165 -~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~ 201 (330)
.....+++...+..+...|+.+|.+.+.+++.+++++
T Consensus 140 ~~~~~~~~~e~~~~~p~s~Y~~sK~~~E~~~~~~~~~~ 177 (346)
T d1oc2a_ 140 GEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSF 177 (346)
T ss_dssp TCSTTSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 0011233334455566789999999999998887653
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=99.52 E-value=2.6e-14 Score=131.41 Aligned_cols=164 Identities=13% Similarity=0.092 Sum_probs=113.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEE------EEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARV------IMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~V------il~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
++||||||+|.||.+++++|+++|+.| +..++....... . .........++.++.+|+++.......
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~--~----~~~~~~~~~~~~~~~~d~~~~~~~~~~- 73 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNR--A----NLAPVDADPRLRFVHGDIRDAGLLARE- 73 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCG--G----GGGGGTTCTTEEEEECCTTCHHHHHHH-
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccH--h----HhhhhhcCCCeEEEEeccccchhhhcc-
Confidence 469999999999999999999998754 334332111000 0 001112356899999999998765543
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 91 QEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
...+|.+||+|+..... .........+++|+.+..++++++. +.+..++|++||... ++.. ...+
T Consensus 74 ------~~~~d~vi~~a~~~~~~--~~~~~~~~~~~~N~~gt~~ll~~~~----~~~~~~~I~~Ss~~~-yg~~--~~~~ 138 (322)
T d1r6da_ 74 ------LRGVDAIVHFAAESHVD--RSIAGASVFTETNVQGTQTLLQCAV----DAGVGRVVHVSTNQV-YGSI--DSGS 138 (322)
T ss_dssp ------TTTCCEEEECCSCCCHH--HHHHCCHHHHHHHTHHHHHHHHHHH----HTTCCEEEEEEEGGG-GCCC--SSSC
T ss_pred ------ccccceEEeeccccccc--ccccchHHHhhhhHHHHHHHHHHHH----HcCCceEEEeeccee-ecCC--CCCC
Confidence 23679999999875422 2334456678899999888877764 344578999998654 4422 2234
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhc
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQ 202 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~ 202 (330)
+++..+..+...|+.+|.+.+.+++.++++.+
T Consensus 139 ~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~ 170 (322)
T d1r6da_ 139 WTESSPLEPNSPYAASKAGSDLVARAYHRTYG 170 (322)
T ss_dssp BCTTSCCCCCSHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 56666677788999999999999999987643
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.52 E-value=6.5e-14 Score=121.00 Aligned_cols=120 Identities=17% Similarity=0.133 Sum_probs=85.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCE--EEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGAR--VIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~--Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
++||||||+|+||+++++.|+++|+. |+...|++++... ...++.++.+|+++.+++.++++
T Consensus 4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~-------------~~~~~~~~~~d~~~~~~~~~~~~--- 67 (252)
T d2q46a1 4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEK-------------IGGEADVFIGDITDADSINPAFQ--- 67 (252)
T ss_dssp CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHH-------------TTCCTTEEECCTTSHHHHHHHHT---
T ss_pred CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHh-------------ccCCcEEEEeeeccccccccccc---
Confidence 79999999999999999999999964 6667788765432 24567889999999998877654
Q ss_pred hcCCCeeEEEEcCCCCCCC-----------CCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcc
Q psy13409 95 DNESAIHLLINNAGVMMCP-----------RQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHT 160 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~-----------~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~ 160 (330)
.+|.+||+++..... .............+|+.+...+.... .....+...+.|+....
T Consensus 68 ----~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~s~~~~~ 136 (252)
T d2q46a1 68 ----GIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAA----KVAGVKHIVVVGSMGGT 136 (252)
T ss_dssp ----TCSEEEECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHH----HHHTCSEEEEEEETTTT
T ss_pred ----cceeeEEEEeeccccccccchhhhhhcccccccchhhhccccccceeecccc----ccccccccccccccccC
Confidence 469999999865421 11222334455677888866655443 33445778888776543
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.50 E-value=4.3e-13 Score=126.07 Aligned_cols=177 Identities=16% Similarity=0.118 Sum_probs=120.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHH-CCCEEEEEec---------ChhHHHHHHHHHHHhhccc--CCCCeEEEEEccCCC
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAK-RGARVIMACR---------SLEKAETAADDIRTSLKDV--KDAGEVVIRQLDLSS 82 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~-~G~~Vil~~R---------~~~~l~~~~~~l~~~~~~~--~~~~~v~~i~~Dls~ 82 (330)
++++||||||+|.||.+++++|++ .|++|+++++ .....++....+....... .....+.++.+|++|
T Consensus 1 ~~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d 80 (383)
T d1gy8a_ 1 SHMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN 80 (383)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC
T ss_pred CcCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccC
Confidence 367899999999999999999986 6899999874 1222333444443322111 134578899999999
Q ss_pred HHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccC
Q psy13409 83 LKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWG 162 (330)
Q Consensus 83 ~~si~~l~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~ 162 (330)
.+.++++++. ...+|++||+|+..... ...+.....+++|+.+...++.++. +.+..++++++|......
T Consensus 81 ~~~l~~~~~~----~~~~d~ViH~Aa~~~~~--~~~~~~~~~~~~N~~~t~~~l~~~~----~~~~~~~~~~~s~~~~~~ 150 (383)
T d1gy8a_ 81 EDFLNGVFTR----HGPIDAVVHMCAFLAVG--ESVRDPLKYYDNNVVGILRLLQAML----LHKCDKIIFSSSAAIFGN 150 (383)
T ss_dssp HHHHHHHHHH----SCCCCEEEECCCCCCHH--HHHHCHHHHHHHHHHHHHHHHHHHH----HTTCCEEEEEEEGGGTBS
T ss_pred HHHhhhhhhc----cceeehhhccccccccc--ccccccccccccccccccccchhhh----ccCCcccccccccccccc
Confidence 9988888764 35689999999976432 1224455678889999777766553 455567887777654322
Q ss_pred CCCC----cccccccccCCCcchhhHHhHHHHHHHHHHHHHHh
Q psy13409 163 DGSM----HFEDINLEKGYSATGAYGRSKLANILFTTELAKRL 201 (330)
Q Consensus 163 ~~~~----~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~ 201 (330)
.... ...++.......+...|+.+|.+.+.+++.+++.+
T Consensus 151 ~~~~~~~~~~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~ 193 (383)
T d1gy8a_ 151 PTMGSVSTNAEPIDINAKKSPESPYGESKLIAERMIRDCAEAY 193 (383)
T ss_dssp CCC-----CCCCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccCCCCCCHHHhhHhHHHHHHHHHHHHh
Confidence 1111 11334444455667889999999999999888764
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=6.6e-13 Score=120.96 Aligned_cols=149 Identities=13% Similarity=0.071 Sum_probs=104.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
.|+||||||+|.||.+++++|+++|+.|+++++.. .+|+.+.+.++.+++.-
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~--------------------------~~~~~~~~~~~~~~~~~-- 53 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD--------------------------ELNLLDSRAVHDFFASE-- 53 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT--------------------------TCCTTCHHHHHHHHHHH--
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCch--------------------------hccccCHHHHHHHHhhc--
Confidence 47899999999999999999999999988765432 15889998888877643
Q ss_pred cCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc--ccccc
Q psy13409 96 NESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF--EDINL 173 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~--~~~~~ 173 (330)
.+|.++|+|+..... ........+.+++|+.++.+++.++. +.+-.++|++||.+. ++...... ++.+.
T Consensus 54 ---~~d~v~~~a~~~~~~-~~~~~~~~~~~~~Nv~gt~~ll~~a~----~~~v~~~i~~SS~~v-yg~~~~~~~~E~~~~ 124 (315)
T d1e6ua_ 54 ---RIDQVYLAAAKVGGI-VANNTYPADFIYQNMMIESNIIHAAH----QNDVNKLLFLGSSCI-YPKLAKQPMAESELL 124 (315)
T ss_dssp ---CCSEEEECCCCCCCH-HHHHHCHHHHHHHHHHHHHHHHHHHH----HTTCCEEEEECCGGG-SCTTCCSSBCGGGTT
T ss_pred ---CCCEEEEcchhcccc-ccchhhHHHHHHHHHHHHHHHHHHHH----HcCCCEEEEECCceE-cCCCCCCCccCCccc
Confidence 589999999765321 12234445567889999777766653 344568999999764 44322211 11111
Q ss_pred cc-CCCcchhhHHhHHHHHHHHHHHHHHh
Q psy13409 174 EK-GYSATGAYGRSKLANILFTTELAKRL 201 (330)
Q Consensus 174 ~~-~~~~~~~Y~asK~a~~~~~~~la~~~ 201 (330)
+. +.+....|+.||.+.+.+++.+.++.
T Consensus 125 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~ 153 (315)
T d1e6ua_ 125 QGTLEPTNEPYAIAKIAGIKLCESYNRQY 153 (315)
T ss_dssp SSCCCGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 11 22234579999999999999997753
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.50 E-value=6.3e-14 Score=130.68 Aligned_cols=164 Identities=15% Similarity=0.058 Sum_probs=114.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
++++||||||+|.||.+++++|+++|++|+++++...... . .......+..+|+.+.+.+..+++
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~------~------~~~~~~~~~~~D~~~~~~~~~~~~--- 78 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHM------T------EDMFCDEFHLVDLRVMENCLKVTE--- 78 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSS------C------GGGTCSEEEECCTTSHHHHHHHHT---
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccch------h------hhcccCcEEEeechhHHHHHHHhh---
Confidence 6888999999999999999999999999999987543210 0 012344677889999877655543
Q ss_pred hcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcc----cc
Q psy13409 95 DNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF----ED 170 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~----~~ 170 (330)
.+|.+||+|+..... ..........+.+|+.+..+++.++ .+.+..++|++||............ ..
T Consensus 79 ----~~d~Vih~a~~~~~~-~~~~~~~~~~~~~n~~gt~~ll~~~----~~~~vk~~i~~SS~~~~~~~~~~~~~~~~~~ 149 (363)
T d2c5aa1 79 ----GVDHVFNLAADMGGM-GFIQSNHSVIMYNNTMISFNMIEAA----RINGIKRFFYASSACIYPEFKQLETTNVSLK 149 (363)
T ss_dssp ----TCSEEEECCCCCCCH-HHHTTCHHHHHHHHHHHHHHHHHHH----HHTTCSEEEEEEEGGGSCGGGSSSSSSCEEC
T ss_pred ----cCCeEeecccccccc-cccccccccccccccchhhHHHHhH----HhhCccccccccccccccccccccccccccc
Confidence 479999999876432 1123455667888999977776665 4455578999999664322111000 11
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhc
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQ 202 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~ 202 (330)
.....+..+...|+.+|.+.+.+++.+.++++
T Consensus 150 ~~e~~~~~p~~~Yg~sK~~~E~~~~~~~~~~g 181 (363)
T d2c5aa1 150 ESDAWPAEPQDAFGLEKLATEELCKHYNKDFG 181 (363)
T ss_dssp GGGGSSBCCSSHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCCcCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 12222344567899999999999999998887
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=4.2e-14 Score=124.64 Aligned_cols=141 Identities=16% Similarity=0.065 Sum_probs=100.2
Q ss_pred CCCCCCCCEEEEEcCCCchHHHHHHHHHHCCC--EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHH
Q psy13409 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGA--RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVR 87 (330)
Q Consensus 10 ~~~~~~gk~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~ 87 (330)
.+.++++|+||||||||.||.+++++|+++|. +|+++.|++..... ....++....+|+.+.+++.
T Consensus 8 ~~~~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~------------~~~~~i~~~~~D~~~~~~~~ 75 (232)
T d2bkaa1 8 EDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDE------------EAYKNVNQEVVDFEKLDDYA 75 (232)
T ss_dssp HHHHHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCS------------GGGGGCEEEECCGGGGGGGG
T ss_pred HHhCCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcc------------cccceeeeeeeccccccccc
Confidence 34567899999999999999999999999995 89999997643211 02346677778888766543
Q ss_pred HHHHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCc
Q psy13409 88 KCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMH 167 (330)
Q Consensus 88 ~l~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~ 167 (330)
.. ....|++||++|... ..........+|+.++..+.+.+ .+.+-.++|++||.....
T Consensus 76 ~~-------~~~~d~vi~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a----~~~~v~~fi~~Ss~~~~~------ 133 (232)
T d2bkaa1 76 SA-------FQGHDVGFCCLGTTR-----GKAGAEGFVRVDRDYVLKSAELA----KAGGCKHFNLLSSKGADK------ 133 (232)
T ss_dssp GG-------GSSCSEEEECCCCCH-----HHHHHHHHHHHHTHHHHHHHHHH----HHTTCCEEEEECCTTCCT------
T ss_pred cc-------ccccccccccccccc-----cccchhhhhhhcccccceeeecc----cccCccccccCCcccccc------
Confidence 32 345799999998652 22344556778888877776665 335567899999975422
Q ss_pred ccccccccCCCcchhhHHhHHHHHHHH
Q psy13409 168 FEDINLEKGYSATGAYGRSKLANILFT 194 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~Y~asK~a~~~~~ 194 (330)
.....|+.+|...+...
T Consensus 134 ----------~~~~~Y~~~K~~~E~~l 150 (232)
T d2bkaa1 134 ----------SSNFLYLQVKGEVEAKV 150 (232)
T ss_dssp ----------TCSSHHHHHHHHHHHHH
T ss_pred ----------CccchhHHHHHHhhhcc
Confidence 23456999998866443
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.23 E-value=3.5e-11 Score=103.57 Aligned_cols=130 Identities=12% Similarity=0.082 Sum_probs=85.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCC--EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGA--RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
-|++|||||||.||++++++|+++|+ .|++..|+... ...++ ..+..|..++ .
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~----------------~~~~~---~~~~~d~~~~------~ 56 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA----------------EHPRL---DNPVGPLAEL------L 56 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC----------------CCTTE---ECCBSCHHHH------G
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchh----------------hcccc---cccccchhhh------h
Confidence 38999999999999999999999997 56766665421 12233 3344443322 1
Q ss_pred HhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccccc
Q psy13409 94 LDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINL 173 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~ 173 (330)
......+|.+|+++|..... ........++|+.++..+.+.+ .+.+-.+++++||..+. +
T Consensus 57 ~~~~~~~d~vi~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~a----~~~~v~~~i~~Ss~~~~-~----------- 116 (212)
T d2a35a1 57 PQLDGSIDTAFCCLGTTIKE----AGSEEAFRAVDFDLPLAVGKRA----LEMGARHYLVVSALGAD-A----------- 116 (212)
T ss_dssp GGCCSCCSEEEECCCCCHHH----HSSHHHHHHHHTHHHHHHHHHH----HHTTCCEEEEECCTTCC-T-----------
T ss_pred hccccchheeeeeeeeeccc----cccccccccchhhhhhhccccc----ccccccccccccccccc-c-----------
Confidence 22345689999999865321 1223456778888877776654 44556789999986542 2
Q ss_pred ccCCCcchhhHHhHHHHHHHH
Q psy13409 174 EKGYSATGAYGRSKLANILFT 194 (330)
Q Consensus 174 ~~~~~~~~~Y~asK~a~~~~~ 194 (330)
.....|..+|...+...
T Consensus 117 ----~~~~~y~~~K~~~E~~l 133 (212)
T d2a35a1 117 ----KSSIFYNRVKGELEQAL 133 (212)
T ss_dssp ----TCSSHHHHHHHHHHHHH
T ss_pred ----ccccchhHHHHHHhhhc
Confidence 34567999998765433
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.19 E-value=5.1e-10 Score=99.21 Aligned_cols=137 Identities=23% Similarity=0.294 Sum_probs=93.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
++||||||+|.||.+++++|.++|++|+.++|+. +|++|.++++++++..
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~---------------------------~D~~d~~~~~~~l~~~--- 51 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD---------------------------LDITNVLAVNKFFNEK--- 51 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT---------------------------CCTTCHHHHHHHHHHH---
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh---------------------------ccCCCHHHHHHHHHHc---
Confidence 4699999999999999999999999999998752 4899999998888765
Q ss_pred CCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccccC
Q psy13409 97 ESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKG 176 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~ 176 (330)
.+|++||+|+..... ..........+.|+.....+...... . ...+++.||.. .++. ....+.+...+
T Consensus 52 --~~d~vih~a~~~~~~--~~~~~~~~~~~~n~~~~~~~~~~~~~----~-~~~~~~~ss~~-v~~~--~~~~~~~e~~~ 119 (281)
T d1vl0a_ 52 --KPNVVINCAAHTAVD--KCEEQYDLAYKINAIGPKNLAAAAYS----V-GAEIVQISTDY-VFDG--EAKEPITEFDE 119 (281)
T ss_dssp --CCSEEEECCCCCCHH--HHHHCHHHHHHHHTHHHHHHHHHHHH----H-TCEEEEEEEGG-GSCS--CCSSCBCTTSC
T ss_pred --CCCEEEeeccccccc--cccccchhhccccccccccccccccc----c-cccccccccce-eeec--ccccccccccc
Confidence 689999999865321 12233345566676665555444322 2 24556666543 3332 22333455555
Q ss_pred CCcchhhHHhHHHHHHHHH
Q psy13409 177 YSATGAYGRSKLANILFTT 195 (330)
Q Consensus 177 ~~~~~~Y~asK~a~~~~~~ 195 (330)
..+...|+.+|...+.+++
T Consensus 120 ~~~~~~~~~~k~~~e~~~~ 138 (281)
T d1vl0a_ 120 VNPQSAYGKTKLEGENFVK 138 (281)
T ss_dssp CCCCSHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhhHHHHHHH
Confidence 6777889999988665543
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=99.17 E-value=6.3e-11 Score=105.70 Aligned_cols=141 Identities=17% Similarity=0.099 Sum_probs=98.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
++||||||+|.||.+++++|.++|. ++.++++... +.+|++|.+.++++++..
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g~-~v~~~~~~~~-----------------------~~~Dl~~~~~~~~~i~~~--- 53 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVGN-LIALDVHSKE-----------------------FCGDFSNPKGVAETVRKL--- 53 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTSE-EEEECTTCSS-----------------------SCCCTTCHHHHHHHHHHH---
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-EEEEECCCcc-----------------------ccCcCCCHHHHHHHHHHc---
Confidence 4699999999999999999999886 4444444320 346999999999888765
Q ss_pred CCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccccccccC
Q psy13409 97 ESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKG 176 (330)
Q Consensus 97 ~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~~ 176 (330)
.+|++||+||..... ...+.....+++|+.+...+..++. + .+.+++++||... ++.. ...+.++..+
T Consensus 54 --~~D~Vih~Aa~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~----~-~~~~~~~~ss~~~-~~~~--~~~~~~E~~~ 121 (298)
T d1n2sa_ 54 --RPDVIVNAAAHTAVD--KAESEPELAQLLNATSVEAIAKAAN----E-TGAWVVHYSTDYV-FPGT--GDIPWQETDA 121 (298)
T ss_dssp --CCSEEEECCCCCCHH--HHTTCHHHHHHHHTHHHHHHHHHHT----T-TTCEEEEEEEGGG-SCCC--TTCCBCTTSC
T ss_pred --CCCEEEEeccccccc--ccccCccccccccccccccchhhhh----c-ccccccccccccc-ccCC--CCCCCccccc
Confidence 689999999976432 2234446677889888777766542 2 2467777777543 3322 2234555556
Q ss_pred CCcchhhHHhHHHHHHHHHH
Q psy13409 177 YSATGAYGRSKLANILFTTE 196 (330)
Q Consensus 177 ~~~~~~Y~asK~a~~~~~~~ 196 (330)
+.+...|+.+|.+.+.+.+.
T Consensus 122 ~~p~~~y~~~k~~~e~~~~~ 141 (298)
T d1n2sa_ 122 TSPLNVYGKTKLAGEKALQD 141 (298)
T ss_dssp CCCSSHHHHHHHHHHHHHHH
T ss_pred cCCCchHhhhhhhhhhhHHh
Confidence 66778999999987765543
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=99.09 E-value=3.3e-10 Score=101.44 Aligned_cols=83 Identities=11% Similarity=0.081 Sum_probs=60.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHH-HHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAE-TAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~-~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.++||||||+|.||++++++|+++|++|+++.|+..... ...+.+... ...++.++.+|+++.+++.+.+.
T Consensus 3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~-----~~~~v~~v~~d~~d~~~~~~~~~--- 74 (312)
T d1qyda_ 3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYF-----KQLGAKLIEASLDDHQRLVDALK--- 74 (312)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHH-----HTTTCEEECCCSSCHHHHHHHHT---
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhh-----ccCCcEEEEeecccchhhhhhcc---
Confidence 345999999999999999999999999999999753211 111111111 24568889999999888776654
Q ss_pred hcCCCeeEEEEcCCCC
Q psy13409 95 DNESAIHLLINNAGVM 110 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~ 110 (330)
..+.++++++..
T Consensus 75 ----~~~~~~~~~~~~ 86 (312)
T d1qyda_ 75 ----QVDVVISALAGG 86 (312)
T ss_dssp ----TCSEEEECCCCS
T ss_pred ----Ccchhhhhhhhc
Confidence 357888888754
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=98.97 E-value=2.8e-09 Score=94.90 Aligned_cols=154 Identities=14% Similarity=0.081 Sum_probs=91.1
Q ss_pred EEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh--
Q psy13409 19 AIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD-- 95 (330)
Q Consensus 19 aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~-- 95 (330)
||||||+|.||.+++++|+++|+ .|+++++-.... +.... .. . ..+|..+. +.+......
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~-~~~~~-~~-------~-----~~~~~~~~---~~~~~~~~~~~ 64 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGT-KFVNL-VD-------L-----NIADYMDK---EDFLIQIMAGE 64 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGG-GGHHH-HT-------S-----CCSEEEEH---HHHHHHHHTTC
T ss_pred EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcc-hhhcc-cc-------c-----chhhhccc---hHHHHHHhhhh
Confidence 89999999999999999999997 577776432211 11111 10 0 11222222 223333332
Q ss_pred cCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccccccc
Q psy13409 96 NESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEK 175 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~~~ 175 (330)
.+..+++++|.|+..... ....+...+.|+.+...++..+. ..+ -++|+.||.....+.. ....+...
T Consensus 65 ~~~~~~~i~~~aa~~~~~----~~~~~~~~~~~~~~~~~~l~~~~----~~~-i~~v~~ss~~~~~~~~---~~~~~~~~ 132 (307)
T d1eq2a_ 65 EFGDVEAIFHEGACSSTT----EWDGKYMMDNNYQYSKELLHYCL----ERE-IPFLYASSAATYGGRT---SDFIESRE 132 (307)
T ss_dssp CCSSCCEEEECCSCCCTT----CCCHHHHHHHTHHHHHHHHHHHH----HHT-CCEEEEEEGGGGTTCC---SCBCSSGG
T ss_pred cccchhhhhhhccccccc----ccccccccccccccccccccccc----ccc-cccccccccccccccc---cccccccc
Confidence 446788999988755322 22334556677777666655443 333 3456666655444432 22223333
Q ss_pred CCCcchhhHHhHHHHHHHHHHHHHHh
Q psy13409 176 GYSATGAYGRSKLANILFTTELAKRL 201 (330)
Q Consensus 176 ~~~~~~~Y~asK~a~~~~~~~la~~~ 201 (330)
...+...|+.+|.+.+.+++.++++.
T Consensus 133 ~~~~~~~Y~~~K~~~e~~~~~~~~~~ 158 (307)
T d1eq2a_ 133 YEKPLNVYGYSKFLFDEYVRQILPEA 158 (307)
T ss_dssp GCCCSSHHHHHHHHHHHHHHHHGGGC
T ss_pred ccccccccccccchhhhhcccccccc
Confidence 44667789999999999988876553
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=98.97 E-value=2e-09 Score=95.35 Aligned_cols=84 Identities=14% Similarity=0.220 Sum_probs=62.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHH--HHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAE--TAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~--~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
+.|+||||||+|.||++++++|++.|++|++++|+..... .....+... ....+.++.+|+.+..+....++
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~~~~~~~~~~~~- 75 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESF-----KASGANIVHGSIDDHASLVEAVK- 75 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHH-----HTTTCEEECCCTTCHHHHHHHHH-
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhh-----ccCCcEEEEeecccchhhhhhhh-
Confidence 4588999999999999999999999999999999754321 111222221 24567888999999887766654
Q ss_pred HHhcCCCeeEEEEcCCCC
Q psy13409 93 ILDNESAIHLLINNAGVM 110 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~ 110 (330)
..+.+|++++..
T Consensus 76 ------~~~~vi~~~~~~ 87 (307)
T d1qyca_ 76 ------NVDVVISTVGSL 87 (307)
T ss_dssp ------TCSEEEECCCGG
T ss_pred ------hceeeeeccccc
Confidence 357888888643
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=98.93 E-value=6.9e-09 Score=95.40 Aligned_cols=133 Identities=17% Similarity=0.043 Sum_probs=83.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHH-HHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKS-VRKCAQEI 93 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~s-i~~l~~~i 93 (330)
+.|+|+||||||.||.+++++|+++|++|+++.|+.++... ..+. ...++.++.+|++|..+ ++.++
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~--~~~~-------~~~~v~~~~gD~~d~~~~~~~a~--- 69 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIA--EELQ-------AIPNVTLFQGPLLNNVPLMDTLF--- 69 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHH--HHHH-------TSTTEEEEESCCTTCHHHHHHHH---
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhh--hhhc-------ccCCCEEEEeeCCCcHHHHHHHh---
Confidence 57999999999999999999999999999999998765322 2222 24568899999998654 33332
Q ss_pred HhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCccccccc
Q psy13409 94 LDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINL 173 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~~~~ 173 (330)
...|.++.+..... .. ++....+ ++....+.+..+++++||.......
T Consensus 70 ----~~~~~~~~~~~~~~------~~--------~~~~~~~----~~~aa~~agv~~~v~~Ss~~~~~~~---------- 117 (350)
T d1xgka_ 70 ----EGAHLAFINTTSQA------GD--------EIAIGKD----LADAAKRAGTIQHYIYSSMPDHSLY---------- 117 (350)
T ss_dssp ----TTCSEEEECCCSTT------SC--------HHHHHHH----HHHHHHHHSCCSEEEEEECCCGGGT----------
T ss_pred ----cCCceEEeeccccc------ch--------hhhhhhH----HHHHHHHhCCCceEEEeeccccccC----------
Confidence 24576666553221 01 1222222 2333344555678888886543221
Q ss_pred ccCCCcchhhHHhHHHHHHH
Q psy13409 174 EKGYSATGAYGRSKLANILF 193 (330)
Q Consensus 174 ~~~~~~~~~Y~asK~a~~~~ 193 (330)
.......|..+|...+.+
T Consensus 118 --~~~~~~~~~~~k~~~~~~ 135 (350)
T d1xgka_ 118 --GPWPAVPMWAPKFTVENY 135 (350)
T ss_dssp --SSCCCCTTTHHHHHHHHH
T ss_pred --CcccchhhhhhHHHHHHH
Confidence 112334566777665444
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.69 E-value=1.8e-12 Score=108.70 Aligned_cols=47 Identities=30% Similarity=0.388 Sum_probs=42.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHh
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTS 63 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~ 63 (330)
+++.|+||+|+||+++|+.|++.|++|++.+|++++++++.+++...
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~~~ 47 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRI 47 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc
Confidence 35788888899999999999999999999999999999998888764
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=97.94 E-value=2.3e-05 Score=65.28 Aligned_cols=89 Identities=19% Similarity=0.222 Sum_probs=65.6
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
..++++|+|+|.|+ ||.|++++..|.+.|. +++++.|+.+.+++..+..++... .........|+.+.+++...
T Consensus 13 ~~~l~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~ 87 (182)
T d1vi2a1 13 GFDIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNE----NTDCVVTVTDLADQQAFAEA 87 (182)
T ss_dssp TCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHH----HSSCEEEEEETTCHHHHHHH
T ss_pred CCCcCCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHh----hcCcceEeeecccccchhhh
Confidence 45789999999999 8999999999999998 799999998766665543332211 22334567888887766554
Q ss_pred HHHHHhcCCCeeEEEEcCCCCC
Q psy13409 90 AQEILDNESAIHLLINNAGVMM 111 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~ 111 (330)
.. ..|++||+.....
T Consensus 88 ~~-------~~diiIN~Tp~G~ 102 (182)
T d1vi2a1 88 LA-------SADILTNGTKVGM 102 (182)
T ss_dssp HH-------TCSEEEECSSTTS
T ss_pred hc-------ccceeccccCCcc
Confidence 43 4699999987654
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.74 E-value=5.2e-05 Score=61.47 Aligned_cols=75 Identities=23% Similarity=0.309 Sum_probs=54.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
++|+|+|.|| |.+|+.+|+.|+++|++|++++|+.++++++.+.+ ........+..+....+..+.
T Consensus 1 ~~K~IliiGa-G~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~----------~~~~~~~~~~~~~~~~~~~i~--- 66 (182)
T d1e5qa1 1 ATKSVLMLGS-GFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGV----------QHSTPISLDVNDDAALDAEVA--- 66 (182)
T ss_dssp CCCEEEEECC-STTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTC----------TTEEEEECCTTCHHHHHHHHT---
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcc----------cccccccccccchhhhHhhhh---
Confidence 4799999988 99999999999999999999999999877765432 234445556666555444432
Q ss_pred hcCCCeeEEEEcC
Q psy13409 95 DNESAIHLLINNA 107 (330)
Q Consensus 95 ~~~g~iDvlInnA 107 (330)
..|.++...
T Consensus 67 ----~~~~~i~~~ 75 (182)
T d1e5qa1 67 ----KHDLVISLI 75 (182)
T ss_dssp ----TSSEEEECS
T ss_pred ----ccceeEeec
Confidence 236665544
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.69 E-value=0.00011 Score=60.31 Aligned_cols=79 Identities=18% Similarity=0.320 Sum_probs=55.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
+|.++||+||+|++|...+......|++|+++.+++++.+.+. ++ ..+.+ .|.++++-.+++.+..
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~-~~--------Ga~~v----i~~~~~~~~~~i~~~t- 93 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVL-QN--------GAHEV----FNHREVNYIDKIKKYV- 93 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HT--------TCSEE----EETTSTTHHHHHHHHH-
T ss_pred CCCEEEEEeccccccccccccccccCccccccccccccccccc-cc--------Ccccc----cccccccHHHHhhhhh-
Confidence 6999999999999999999988899999999999877654332 21 12222 3666655444433322
Q ss_pred hcCCCeeEEEEcCC
Q psy13409 95 DNESAIHLLINNAG 108 (330)
Q Consensus 95 ~~~g~iDvlInnAG 108 (330)
....+|+++++.|
T Consensus 94 -~~~g~d~v~d~~g 106 (174)
T d1yb5a2 94 -GEKGIDIIIEMLA 106 (174)
T ss_dssp -CTTCEEEEEESCH
T ss_pred -ccCCceEEeeccc
Confidence 1235899999886
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=97.64 E-value=9.6e-05 Score=61.07 Aligned_cols=79 Identities=16% Similarity=0.278 Sum_probs=55.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
+|.++||+||+|++|.+.+......|++|+.+.+++++.+... +. +....+ |-.+++..+...+..
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~----~~------Ga~~vi---~~~~~~~~~~~~~~~- 94 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLK----QI------GFDAAF---NYKTVNSLEEALKKA- 94 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH----HT------TCSEEE---ETTSCSCHHHHHHHH-
T ss_pred CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHH----hh------hhhhhc---ccccccHHHHHHHHh-
Confidence 6999999999999999999999999999999999987654432 21 222222 334433333333322
Q ss_pred hcCCCeeEEEEcCC
Q psy13409 95 DNESAIHLLINNAG 108 (330)
Q Consensus 95 ~~~g~iDvlInnAG 108 (330)
....+|+++++.|
T Consensus 95 -~~~Gvd~v~D~vG 107 (182)
T d1v3va2 95 -SPDGYDCYFDNVG 107 (182)
T ss_dssp -CTTCEEEEEESSC
T ss_pred -hcCCCceeEEecC
Confidence 2346999999998
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=97.56 E-value=9e-05 Score=60.81 Aligned_cols=79 Identities=18% Similarity=0.247 Sum_probs=59.1
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
..+++||.|+|.|+ ||.+++++..|.+.|.+|+++.|+.++.+++.+.+... ..+..+ +..+.
T Consensus 13 ~~~~~~k~vlIlGa-GGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~-------~~~~~~--~~~~~------- 75 (170)
T d1nyta1 13 SFIRPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHT-------GSIQAL--SMDEL------- 75 (170)
T ss_dssp TCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGG-------SSEEEC--CSGGG-------
T ss_pred CCCCCCCEEEEECC-cHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhc-------cccccc--ccccc-------
Confidence 35789999999998 89999999999999999999999999988877766442 223322 22110
Q ss_pred HHHHhcCCCeeEEEEcCCCCC
Q psy13409 91 QEILDNESAIHLLINNAGVMM 111 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~ 111 (330)
.....|++||+.....
T Consensus 76 -----~~~~~dliIN~Tp~G~ 91 (170)
T d1nyta1 76 -----EGHEFDLIINATSSGI 91 (170)
T ss_dssp -----TTCCCSEEEECCSCGG
T ss_pred -----cccccceeecccccCc
Confidence 1235799999986654
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=97.56 E-value=0.00011 Score=59.80 Aligned_cols=75 Identities=27% Similarity=0.413 Sum_probs=57.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
++++++++|.|+ |++|..+++.|...|+ +|.++.|+.++.+++.+.+. ..+ . +.+++...+.
T Consensus 21 ~l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~---------~~~--~-----~~~~~~~~l~ 83 (159)
T d1gpja2 21 SLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLG---------GEA--V-----RFDELVDHLA 83 (159)
T ss_dssp CCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHT---------CEE--C-----CGGGHHHHHH
T ss_pred CcccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhh---------ccc--c-----cchhHHHHhc
Confidence 589999999998 9999999999999998 69999999988877776542 221 1 2334444433
Q ss_pred HHHhcCCCeeEEEEcCCCCC
Q psy13409 92 EILDNESAIHLLINNAGVMM 111 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~ 111 (330)
..|++|++.+...
T Consensus 84 -------~~Divi~atss~~ 96 (159)
T d1gpja2 84 -------RSDVVVSATAAPH 96 (159)
T ss_dssp -------TCSEEEECCSSSS
T ss_pred -------cCCEEEEecCCCC
Confidence 3599999998654
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=97.50 E-value=0.00018 Score=59.18 Aligned_cols=79 Identities=16% Similarity=0.248 Sum_probs=60.4
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
+..++||+++|.|+ ||.+++++..|.+.+.+|+++.|+.+++++..+.+... .++.....|-.
T Consensus 13 ~~~~~~k~vlIlGa-GGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~-------~~~~~~~~~~~--------- 75 (171)
T d1p77a1 13 NWLRPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPY-------GNIQAVSMDSI--------- 75 (171)
T ss_dssp TCCCTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGG-------SCEEEEEGGGC---------
T ss_pred CCCCCCCEEEEECC-cHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhc-------cccchhhhccc---------
Confidence 45789999999998 88999999999988889999999999988888877542 34444444321
Q ss_pred HHHHhcCCCeeEEEEcCCCCC
Q psy13409 91 QEILDNESAIHLLINNAGVMM 111 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~ 111 (330)
.....|++||+.....
T Consensus 76 -----~~~~~diiIN~tp~g~ 91 (171)
T d1p77a1 76 -----PLQTYDLVINATSAGL 91 (171)
T ss_dssp -----CCSCCSEEEECCCC--
T ss_pred -----cccccceeeecccccc
Confidence 1246799999987664
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.49 E-value=0.00015 Score=56.78 Aligned_cols=73 Identities=15% Similarity=0.287 Sum_probs=56.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
++++|.|+ |.+|+.+++.|.+.|+.|++++++++..++..+++ .+.++.+|.++++.++++ .
T Consensus 1 M~IvI~G~-G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~-----------~~~vi~Gd~~~~~~l~~~------~ 62 (132)
T d1lssa_ 1 MYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-----------DALVINGDCTKIKTLEDA------G 62 (132)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----------SSEEEESCTTSHHHHHHT------T
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh-----------hhhhccCcccchhhhhhc------C
Confidence 47899998 99999999999999999999999998877654321 346788999998865544 1
Q ss_pred CCCeeEEEEcC
Q psy13409 97 ESAIHLLINNA 107 (330)
Q Consensus 97 ~g~iDvlInnA 107 (330)
....|.++...
T Consensus 63 i~~a~~vv~~t 73 (132)
T d1lssa_ 63 IEDADMYIAVT 73 (132)
T ss_dssp TTTCSEEEECC
T ss_pred hhhhhhhcccC
Confidence 23457776653
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=97.47 E-value=0.00022 Score=58.31 Aligned_cols=80 Identities=15% Similarity=0.238 Sum_probs=57.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.|++++|+||+|++|...+......|++|+++++++++.+.+.+ + +.. ...|.++++-.+++ .++.
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~-l---------Ga~---~vi~~~~~d~~~~v-~~~t 93 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK-A---------GAW---QVINYREEDLVERL-KEIT 93 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH-H---------TCS---EEEETTTSCHHHHH-HHHT
T ss_pred CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHh-c---------CCe---EEEECCCCCHHHHH-HHHh
Confidence 58999999999999999999988999999999999988655432 2 222 12366665433333 2221
Q ss_pred hcCCCeeEEEEcCCC
Q psy13409 95 DNESAIHLLINNAGV 109 (330)
Q Consensus 95 ~~~g~iDvlInnAG~ 109 (330)
....+|+++++.|.
T Consensus 94 -~g~g~d~v~d~~g~ 107 (179)
T d1qora2 94 -GGKKVRVVYDSVGR 107 (179)
T ss_dssp -TTCCEEEEEECSCG
T ss_pred -CCCCeEEEEeCccH
Confidence 23468999999973
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.43 E-value=0.00013 Score=60.50 Aligned_cols=106 Identities=14% Similarity=0.118 Sum_probs=67.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
.+|.++||+||+||+|.+.+......|++|+.+.+++++.+.+.+ + +.... + |-.+. .+.....
T Consensus 30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~-l---------Ga~~v-i--~~~~~--~~~~~~~- 93 (176)
T d1xa0a2 30 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRV-L---------GAKEV-L--AREDV--MAERIRP- 93 (176)
T ss_dssp GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHH-T---------TCSEE-E--ECC------------
T ss_pred CCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHh-c---------cccee-e--ecchh--HHHHHHH-
Confidence 468999999999999999988888899999999999887655432 1 33322 2 22221 1111111
Q ss_pred HhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccC
Q psy13409 94 LDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWG 162 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~ 162 (330)
-..+.+|++|.+.|... ....+..++. +|++|.++...+...
T Consensus 94 -~~~~gvD~vid~vgg~~------------------------~~~~l~~l~~--~Griv~~G~~~g~~~ 135 (176)
T d1xa0a2 94 -LDKQRWAAAVDPVGGRT------------------------LATVLSRMRY--GGAVAVSGLTGGAEV 135 (176)
T ss_dssp -CCSCCEEEEEECSTTTT------------------------HHHHHHTEEE--EEEEEECSCCSSSCC
T ss_pred -hhccCcCEEEEcCCchh------------------------HHHHHHHhCC--CceEEEeecccCccc
Confidence 12357999999998431 2233333433 589999998765443
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.37 E-value=0.0008 Score=54.39 Aligned_cols=83 Identities=22% Similarity=0.234 Sum_probs=56.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
-.|.+++|+| +|+||...+..+...|++|+++++++++++.+.+ + +.... +..|-.+ ++.....+.+
T Consensus 25 ~~g~~vlV~G-~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~-~---------ga~~~-~~~~~~~-~~~~~~~~~~ 91 (170)
T d1e3ja2 25 QLGTTVLVIG-AGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN-C---------GADVT-LVVDPAK-EEESSIIERI 91 (170)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-T---------TCSEE-EECCTTT-SCHHHHHHHH
T ss_pred CCCCEEEEEc-ccccchhhHhhHhhhcccccccchHHHHHHHHHH-c---------CCcEE-Eeccccc-cccchhhhhh
Confidence 3688999997 5899999999888899999999999988655432 1 22222 2233322 2233444445
Q ss_pred HhcC-CCeeEEEEcCCC
Q psy13409 94 LDNE-SAIHLLINNAGV 109 (330)
Q Consensus 94 ~~~~-g~iDvlInnAG~ 109 (330)
.+.. ..+|++|.++|.
T Consensus 92 ~~~~g~g~D~vid~~g~ 108 (170)
T d1e3ja2 92 RSAIGDLPNVTIDCSGN 108 (170)
T ss_dssp HHHSSSCCSEEEECSCC
T ss_pred hcccccCCceeeecCCC
Confidence 4443 468999999984
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.34 E-value=0.00029 Score=57.74 Aligned_cols=79 Identities=18% Similarity=0.263 Sum_probs=53.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
+|.++||+||+|++|...+..+...|++|+++.+++++.+. +++. +.. .+ .|..+++-.+.+ .+..
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~----l~~~------Ga~-~v--i~~~~~~~~~~v-~~~t 90 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREM----LSRL------GVE-YV--GDSRSVDFADEI-LELT 90 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHH----HHTT------CCS-EE--EETTCSTHHHHH-HHHT
T ss_pred CCCEEEEECCCCCcccccchhhccccccceeeecccccccc----cccc------ccc-cc--ccCCccCHHHHH-HHHh
Confidence 58999999999999999999888899999999998776433 2221 222 22 244454322322 2221
Q ss_pred hcCCCeeEEEEcCC
Q psy13409 95 DNESAIHLLINNAG 108 (330)
Q Consensus 95 ~~~g~iDvlInnAG 108 (330)
....+|+++++.|
T Consensus 91 -~~~g~d~v~d~~g 103 (183)
T d1pqwa_ 91 -DGYGVDVVLNSLA 103 (183)
T ss_dssp -TTCCEEEEEECCC
T ss_pred -CCCCEEEEEeccc
Confidence 1236999999997
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=97.33 E-value=0.00033 Score=58.13 Aligned_cols=87 Identities=16% Similarity=0.214 Sum_probs=57.1
Q ss_pred CCCEEEE-EcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 15 DGKTAIV-TGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 15 ~gk~aLI-TGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
.|.+++| +||+|++|.+.+...-..|++|+++.|+.+..++..+.+++. ..+.+ +..|-.+..++...+.++
T Consensus 28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~l-----Gad~v--i~~~~~~~~~~~~~v~~~ 100 (189)
T d1gu7a2 28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKEL-----GATQV--ITEDQNNSREFGPTIKEW 100 (189)
T ss_dssp TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHH-----TCSEE--EEHHHHHCGGGHHHHHHH
T ss_pred CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhc-----cccEE--EeccccchhHHHHHHHHH
Confidence 4555555 799999999998888888999999999887777766666554 12222 222211222333344444
Q ss_pred Hh-cCCCeeEEEEcCC
Q psy13409 94 LD-NESAIHLLINNAG 108 (330)
Q Consensus 94 ~~-~~g~iDvlInnAG 108 (330)
.+ ..+.+|+++++.|
T Consensus 101 ~~~~g~~vdvv~D~vg 116 (189)
T d1gu7a2 101 IKQSGGEAKLALNCVG 116 (189)
T ss_dssp HHHHTCCEEEEEESSC
T ss_pred HhhccCCceEEEECCC
Confidence 33 4457999999987
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.31 E-value=0.0063 Score=48.27 Aligned_cols=117 Identities=18% Similarity=0.204 Sum_probs=71.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCC--EEEEEecChh--HHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGA--RVIMACRSLE--KAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~~--~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
+++.|+||+|.+|.+++..|+.+|. ++++++++.+ +++....++...........++.....+ +.+.
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~--d~~~------- 71 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDE--NLRI------- 71 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETT--CGGG-------
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcc--hHHH-------
Confidence 3689999999999999999999984 8999998763 3444445555432222223344333321 1111
Q ss_pred HHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEE
Q psy13409 93 ILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINL 154 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~i 154 (330)
...-|++|.+||....+ .++. .+.+..|.. +++.+.+.+.+.....|+.+
T Consensus 72 ----l~~aDvVVitAG~~~~~-g~sR---~dl~~~Na~----iv~~i~~~i~~~~~~~iivV 121 (145)
T d1hyea1 72 ----IDESDVVIITSGVPRKE-GMSR---MDLAKTNAK----IVGKYAKKIAEICDTKIFVI 121 (145)
T ss_dssp ----GTTCSEEEECCSCCCCT-TCCH---HHHHHHHHH----HHHHHHHHHHHHCCCEEEEC
T ss_pred ----hccceEEEEecccccCC-CCCh---hhhhhhhHH----HHHHHHHHHhccCCCeEEEE
Confidence 12459999999975433 2232 334445544 36777777766655555543
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=97.27 E-value=0.0021 Score=51.27 Aligned_cols=119 Identities=11% Similarity=0.128 Sum_probs=73.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCC--EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGA--RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
|++.|+|+ |.+|..++..|+.+|. ++++.++++++++....++....... .........|..+ +
T Consensus 2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~--~~~~~~~~~d~~~---l-------- 67 (146)
T d1hyha1 2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANL--EAHGNIVINDWAA---L-------- 67 (146)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGS--SSCCEEEESCGGG---G--------
T ss_pred CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhcccccc--CCccceeccCHHH---h--------
Confidence 67888896 9999999999999884 79999999988776666666543322 2223333334322 1
Q ss_pred hcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcC
Q psy13409 95 DNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSS 156 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS 156 (330)
..-|++|.+||......+....+-.+.++.|. .+++.+.+.+.+.....++.+-|
T Consensus 68 ---~~adiVVitaG~~~~~~~~~g~~R~~l~~~N~----~i~~~i~~~i~~~~p~aivivvt 122 (146)
T d1hyha1 68 ---ADADVVISTLGNIKLQQDNPTGDRFAELKFTS----SMVQSVGTNLKESGFHGVLVVIS 122 (146)
T ss_dssp ---TTCSEEEECCSCGGGTC-------CTTHHHHH----HHHHHHHHHHHHTTCCSEEEECS
T ss_pred ---ccccEEEEeccccccccccCCccHHHHHHHHH----HHHHHHHHHHhhcCCCeEEEEec
Confidence 23599999999765332211122233344454 44777777777766555555555
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.22 E-value=0.0008 Score=55.18 Aligned_cols=80 Identities=20% Similarity=0.323 Sum_probs=54.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
.|.+++|+|+ |+||...+..+...|+ +|+++++++++++.+ +++ +... ++ |.++.+ .....+++
T Consensus 28 ~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a-~~l---------Ga~~-vi--~~~~~~-~~~~~~~i 92 (182)
T d1vj0a2 28 AGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSPNRLKLA-EEI---------GADL-TL--NRRETS-VEERRKAI 92 (182)
T ss_dssp BTCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESCHHHHHHH-HHT---------TCSE-EE--ETTTSC-HHHHHHHH
T ss_pred CCCEEEEECC-Cccchhheeccccccccccccccccccccccc-ccc---------cceE-EE--eccccc-hHHHHHHH
Confidence 6999999997 8999999999989998 899999999887544 222 2222 22 443322 22222333
Q ss_pred HhcC--CCeeEEEEcCCC
Q psy13409 94 LDNE--SAIHLLINNAGV 109 (330)
Q Consensus 94 ~~~~--g~iDvlInnAG~ 109 (330)
.+.. ..+|++|.++|.
T Consensus 93 ~~~~~~~g~Dvvid~vG~ 110 (182)
T d1vj0a2 93 MDITHGRGADFILEATGD 110 (182)
T ss_dssp HHHTTTSCEEEEEECSSC
T ss_pred HHhhCCCCceEEeecCCc
Confidence 3322 258999999985
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.19 E-value=0.0067 Score=48.17 Aligned_cols=117 Identities=17% Similarity=0.118 Sum_probs=74.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCC--EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGA--RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.-.++++.|+|+ |.+|.+++..|+..|. +|++++++++.++....++....... ...+.....|..+
T Consensus 3 ~~~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~--~~~~~~~~~d~~~-------- 71 (148)
T d1ldna1 3 NNGGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFA--PKPVDIWHGDYDD-------- 71 (148)
T ss_dssp TTTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSS--SSCCEEEECCGGG--------
T ss_pred CCCCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCcccc--CCCeEEEECCHHH--------
Confidence 346788999997 9999999999999885 79999999988777666666532221 2233333444321
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCC-CeEEEE
Q psy13409 91 QEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAP-ARIINL 154 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~-g~IV~i 154 (330)
...-|++|.++|....+.+ +. .+.+..|. .+++.+.+.+.+... +.+|++
T Consensus 72 ------l~daDvvvitag~~~~~~~-~R---~dl~~~N~----~i~~~i~~~i~~~~p~a~~ivv 122 (148)
T d1ldna1 72 ------CRDADLVVICAGANQKPGE-TR---LDLVDKNI----AIFRSIVESVMASGFQGLFLVA 122 (148)
T ss_dssp ------TTTCSEEEECCSCCCCTTT-CS---GGGHHHHH----HHHHHHHHHHHHHTCCSEEEEC
T ss_pred ------hccceeEEEecccccccCc-ch---hHHHHHHH----HHHHHHHHHHHhhCCCceEEEe
Confidence 2245999999997654322 22 22233443 346666676666654 444444
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=97.15 E-value=0.0036 Score=49.75 Aligned_cols=116 Identities=14% Similarity=0.158 Sum_probs=71.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCC--CEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRG--ARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G--~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
+.+++.|.|+ |.+|..++..|+.+| .+|+++++++++++....++...... .........|..+
T Consensus 4 ~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~---~~~~~~~~~d~~~---------- 69 (146)
T d1ez4a1 4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAF---TAPKKIYSGEYSD---------- 69 (146)
T ss_dssp TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGG---SCCCEEEECCGGG----------
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccc---cCCceEeeccHHH----------
Confidence 5678999996 999999999999998 47999999998776666666543211 1223334444321
Q ss_pred HHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcC
Q psy13409 93 ILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSS 156 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS 156 (330)
...-|++|.++|....+. .+-.+.+..|.. +++.+.+.+.+.....|+.+.|
T Consensus 70 ----~~~adivvitag~~~~~g----~~r~~l~~~N~~----i~~~~~~~i~~~~p~aivivvt 121 (146)
T d1ez4a1 70 ----CKDADLVVITAGAPQKPG----ESRLDLVNKNLN----ILSSIVKPVVDSGFDGIFLVAA 121 (146)
T ss_dssp ----GTTCSEEEECCCC--------------CHHHHHH----HHHHHHHHHHHTTCCSEEEECS
T ss_pred ----hccccEEEEecccccCCC----CCHHHHHHHHHH----HHHHHHHHHhhcCCCcEEEEeC
Confidence 124599999999764331 222333445543 4677777777766555655555
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=97.13 E-value=0.00078 Score=54.93 Aligned_cols=43 Identities=21% Similarity=0.296 Sum_probs=37.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETA 56 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~ 56 (330)
-.|++++|+||+|++|...+..+...|++|+.+++++++.+..
T Consensus 26 ~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~ 68 (171)
T d1iz0a2 26 RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALP 68 (171)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHH
T ss_pred CCCCEEEEEeccccchhhhhhhhcccccccccccccccccccc
Confidence 3799999999999999999998888999999999988765543
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=97.13 E-value=0.00035 Score=49.83 Aligned_cols=43 Identities=23% Similarity=0.302 Sum_probs=38.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETA 56 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~ 56 (330)
-++.+++|+||+||+|...+..+...|++|+.+.+++++.+.+
T Consensus 30 ~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~ 72 (77)
T d1o8ca2 30 PQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYL 72 (77)
T ss_dssp GGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH
T ss_pred cCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHH
Confidence 4789999999999999999998888899999999998876544
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=97.07 E-value=0.001 Score=56.97 Aligned_cols=80 Identities=18% Similarity=0.173 Sum_probs=56.4
Q ss_pred CCCCCCEEEEEcCC----------------CchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEE
Q psy13409 12 TRLDGKTAIVTGSN----------------TGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVI 75 (330)
Q Consensus 12 ~~~~gk~aLITGas----------------~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~ 75 (330)
.+|+|+++|||+|. |..|.+||+++..+|+.|+++.-.... .....+..
T Consensus 2 ~dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~---------------~~p~~~~~ 66 (223)
T d1u7za_ 2 NDLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSL---------------PTPPFVKR 66 (223)
T ss_dssp CTTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCC---------------CCCTTEEE
T ss_pred cccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhccccc---------------Cccccccc
Confidence 47999999999775 789999999999999999888664321 02334444
Q ss_pred EEccCCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCC
Q psy13409 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMM 111 (330)
Q Consensus 76 i~~Dls~~~si~~l~~~i~~~~g~iDvlInnAG~~~ 111 (330)
+ .+...+++...+... ....|++|++|++.-
T Consensus 67 ~--~~~t~~~m~~~~~~~---~~~~D~~i~aAAvsD 97 (223)
T d1u7za_ 67 V--DVMTALEMEAAVNAS---VQQQNIFIGCAAVAD 97 (223)
T ss_dssp E--ECCSHHHHHHHHHHH---GGGCSEEEECCBCCS
T ss_pred c--eehhhHHHHHHHHhh---hccceeEeeeechhh
Confidence 3 445555555444443 345699999999764
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=97.00 E-value=0.0075 Score=48.22 Aligned_cols=123 Identities=20% Similarity=0.072 Sum_probs=73.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
+.+++.|.|+ |.+|..++..|+..+. ++++.+.+++.++.....+............+.. . ++. +...
T Consensus 6 k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~--~--~~~---~~~~--- 74 (154)
T d1pzga1 6 RRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA--E--YSY---EAAL--- 74 (154)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE--E--CSH---HHHH---
T ss_pred CCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEec--c--Cch---hhhh---
Confidence 5688888897 9999999999988885 8999999988777776666543222111122211 1 111 1111
Q ss_pred HhcCCCeeEEEEcCCCCCCCCCCC-hhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcC
Q psy13409 94 LDNESAIHLLINNAGVMMCPRQLT-EDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSS 156 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~~~~~~-~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS 156 (330)
..-|++|..+|....+.+.+ ...-.+.+..|..- ++.+.+.+.+.....++.+.|
T Consensus 75 ----~~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~i----v~~i~~~i~~~~p~aiviivs 130 (154)
T d1pzga1 75 ----TGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKI----IREIGQNIKKYCPKTFIIVVT 130 (154)
T ss_dssp ----TTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHH----HHHHHHHHHHHCTTCEEEECC
T ss_pred ----cCCCeEEEecccccCCCCCCcccchhhhhhhhHHH----HHHHHHHHHhcCCCcEEEEeC
Confidence 13599999999876442211 11223334444444 666777666666555555444
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.96 E-value=0.0021 Score=51.83 Aligned_cols=80 Identities=15% Similarity=0.176 Sum_probs=54.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
.|.+++|+|++|++|..++..+...|+ +|+++++++++++...+ + +.. ..+ |.++++-.+...+..
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~-~---------Ga~-~~i--~~~~~~~~~~~~~~~ 93 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR-A---------GAD-YVI--NASMQDPLAEIRRIT 93 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH-H---------TCS-EEE--ETTTSCHHHHHHHHT
T ss_pred CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHH-c---------CCc-eee--ccCCcCHHHHHHHHh
Confidence 689999999999999999999988885 89999999877554432 2 222 222 344444334433222
Q ss_pred HhcCCCeeEEEEcCCC
Q psy13409 94 LDNESAIHLLINNAGV 109 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~ 109 (330)
..+.+|++|.++|.
T Consensus 94 --~~~~~d~vid~~g~ 107 (170)
T d1jvba2 94 --ESKGVDAVIDLNNS 107 (170)
T ss_dssp --TTSCEEEEEESCCC
T ss_pred --hcccchhhhccccc
Confidence 22459999999984
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=96.95 E-value=0.00072 Score=52.48 Aligned_cols=73 Identities=18% Similarity=0.132 Sum_probs=54.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
|.++|.|+ |-+|+.+++.|.+.|++|++++.+++..++..+ .....+.+|.++++.++++-
T Consensus 1 k~~iIiG~-G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~------------~~~~~~~gd~~~~~~l~~a~------ 61 (134)
T d2hmva1 1 KQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS------------YATHAVIANATEENELLSLG------ 61 (134)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTT------------TCSEEEECCTTCTTHHHHHT------
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHH------------hCCcceeeecccchhhhccC------
Confidence 56788887 899999999999999999999999987665431 12345678999988765541
Q ss_pred CCCeeEEEEcCC
Q psy13409 97 ESAIHLLINNAG 108 (330)
Q Consensus 97 ~g~iDvlInnAG 108 (330)
....|.+|...+
T Consensus 62 i~~a~~vi~~~~ 73 (134)
T d2hmva1 62 IRNFEYVIVAIG 73 (134)
T ss_dssp GGGCSEEEECCC
T ss_pred CccccEEEEEcC
Confidence 123577766654
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=96.93 E-value=0.027 Score=45.23 Aligned_cols=119 Identities=16% Similarity=0.152 Sum_probs=77.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCC--EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGA--RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.++.+++.|.|+ |.+|..++..|+.+|. ++++++++++.....+.++...... .+........|..+
T Consensus 17 ~~~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~--~~~~~~~~~~d~~~-------- 85 (160)
T d1i0za1 17 TVPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLF--LQTPKIVADKDYSV-------- 85 (160)
T ss_dssp CCCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGG--CCCSEEEECSSGGG--------
T ss_pred cCCCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccc--cCCCeEEeccchhh--------
Confidence 467789999997 9999999999999996 7999999988876666666542211 12233333334322
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcC
Q psy13409 91 QEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSS 156 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS 156 (330)
...-|++|..||....+ ..+. .+.+..|.. +++.+.+.+.+.....|+.+-|
T Consensus 86 ------~~~adiVVitAg~~~~~-g~tR---~~l~~~N~~----i~~~i~~~i~~~~p~aiiivvt 137 (160)
T d1i0za1 86 ------TANSKIVVVTAGVRQQE-GESR---LNLVQRNVN----VFKFIIPQIVKYSPDCIIIVVS 137 (160)
T ss_dssp ------GTTCSEEEECCSCCCCT-TCCG---GGGHHHHHH----HHHHHHHHHHHHCTTCEEEECS
T ss_pred ------cccccEEEEecCCcccc-Ccch---HHHHHHHHH----HHHHHHHHHHhcCCCcEEEEeC
Confidence 12359999999976533 2222 233444444 5788888887776555554444
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.89 E-value=0.013 Score=47.04 Aligned_cols=120 Identities=18% Similarity=0.192 Sum_probs=76.2
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCC--EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGA--RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
..++..++.|+|+ |.+|..+|..|+.+|. ++++++++.+.+.....+++..... .+........|..+
T Consensus 15 ~~~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~--~~~~~~~~~~d~~~------- 84 (159)
T d2ldxa1 15 DKLSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLF--LSTPKIVFGKDYNV------- 84 (159)
T ss_dssp CCCCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTT--CSCCEEEEESSGGG-------
T ss_pred ccCCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchh--cCCCeEEeccchhh-------
Confidence 3467778889996 9999999999999985 7999999988877666666543211 12233333334322
Q ss_pred HHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcC
Q psy13409 90 AQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSS 156 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS 156 (330)
...-|++|..||....+. .+..+ .++.|.. +++.+.+.+.+.....|+.+-|
T Consensus 85 -------~~~adivvitag~~~~~~-~~R~d---ll~~N~~----i~~~i~~~i~~~~p~~ivivvt 136 (159)
T d2ldxa1 85 -------SANSKLVIITAGARMVSG-QTRLD---LLQRNVA----IMKAIVPGVIQNSPDCKIIVVT 136 (159)
T ss_dssp -------GTTEEEEEECCSCCCCTT-TCSSC---TTHHHHH----HHHHHTTTHHHHSTTCEEEECS
T ss_pred -------hccccEEEEecccccCCC-CCHHH---HHHHHHH----HHHHHHHHHhccCCCeEEEEeC
Confidence 134699999999765442 22222 2333443 3677777777666544444444
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.80 E-value=0.0053 Score=49.46 Aligned_cols=81 Identities=20% Similarity=0.246 Sum_probs=54.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
.|.+++|.|+ |++|...+..+...|+ +|+++++++.+++... ++ +... ++..+-.+..+....++..
T Consensus 26 ~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~-~~---------Ga~~-~~~~~~~~~~~~~~~~~~~ 93 (171)
T d1pl8a2 26 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK-EI---------GADL-VLQISKESPQEIARKVEGQ 93 (171)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HT---------TCSE-EEECSSCCHHHHHHHHHHH
T ss_pred CCCEEEEECC-CccHHHHHHHHHHcCCceEEeccCCHHHHHHHH-Hh---------CCcc-ccccccccccccccccccc
Confidence 5789999987 9999999999989999 7999999998876442 22 2222 2333333433333333322
Q ss_pred HhcCCCeeEEEEcCCC
Q psy13409 94 LDNESAIHLLINNAGV 109 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~ 109 (330)
....+|++|.++|.
T Consensus 94 --~g~g~Dvvid~~G~ 107 (171)
T d1pl8a2 94 --LGCKPEVTIECTGA 107 (171)
T ss_dssp --HTSCCSEEEECSCC
T ss_pred --CCCCceEEEeccCC
Confidence 22368999999984
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.78 E-value=0.004 Score=49.37 Aligned_cols=114 Identities=20% Similarity=0.204 Sum_probs=67.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHCCC--EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRGA--RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
++.|+||+|.+|.+++..|+.+|. ++++++.+..+.+ ...+.. .........-+ ...+....+
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~--a~Dl~~-------~~~~~~~~~~~-~~~~~~~~~----- 66 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGV--AADLSH-------IETRATVKGYL-GPEQLPDCL----- 66 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHH--HHHHTT-------SSSSCEEEEEE-SGGGHHHHH-----
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchh--hHHHhh-------hhhhcCCCeEE-cCCChHHHh-----
Confidence 688999999999999999999985 6999998765322 223321 11111111111 222222222
Q ss_pred cCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcC
Q psy13409 96 NESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSS 156 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS 156 (330)
..-|++|..+|....+ .++. .+.++.|..- ++.+.+.+.+.....++.+.|
T Consensus 67 --~~aDivVitag~~~~~-g~sR---~~ll~~N~~i----~~~i~~~i~~~~p~~iiivvt 117 (144)
T d1mlda1 67 --KGCDVVVIPAGVPRKP-GMTR---DDLFNTNATI----VATLTAACAQHCPDAMICIIS 117 (144)
T ss_dssp --TTCSEEEECCSCCCCT-TCCG---GGGHHHHHHH----HHHHHHHHHHHCTTSEEEECS
T ss_pred --CCCCEEEECCCcCCCC-CCCc---chHHHHHHHH----HHHHHHHHHhcCCCeEEEEec
Confidence 2359999999975433 2233 3345566655 677777777766544544444
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.74 E-value=0.0018 Score=53.32 Aligned_cols=79 Identities=16% Similarity=0.264 Sum_probs=52.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCE-EEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGAR-VIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~-Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
.+++|||+||+||+|...+......|++ |+.+.++.++..++.+++ +... ..|.++++ ..+.++++
T Consensus 30 ~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~---------gad~---vi~~~~~~-~~~~~~~~ 96 (187)
T d1vj1a2 30 SNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSEL---------GFDA---AVNYKTGN-VAEQLREA 96 (187)
T ss_dssp SCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHS---------CCSE---EEETTSSC-HHHHHHHH
T ss_pred CCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcc---------cceE---Eeeccchh-HHHHHHHH
Confidence 3589999999999999999888888986 555667766655544332 2222 23555433 33334444
Q ss_pred HhcCCCeeEEEEcCC
Q psy13409 94 LDNESAIHLLINNAG 108 (330)
Q Consensus 94 ~~~~g~iDvlInnAG 108 (330)
.. ..+|+++.+.|
T Consensus 97 ~~--~GvDvv~D~vG 109 (187)
T d1vj1a2 97 CP--GGVDVYFDNVG 109 (187)
T ss_dssp CT--TCEEEEEESSC
T ss_pred hc--cCceEEEecCC
Confidence 22 35999999997
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=96.64 E-value=0.0019 Score=48.89 Aligned_cols=39 Identities=18% Similarity=0.354 Sum_probs=35.5
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChh
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLE 51 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~ 51 (330)
++++||+++|.|+ |.+|..-++.|++.|++|++++....
T Consensus 8 l~l~~k~vlVvG~-G~va~~ka~~ll~~ga~v~v~~~~~~ 46 (113)
T d1pjqa1 8 CQLRDRDCLIVGG-GDVAERKARLLLEAGARLTVNALTFI 46 (113)
T ss_dssp ECCBTCEEEEECC-SHHHHHHHHHHHHTTBEEEEEESSCC
T ss_pred EEeCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 5799999999999 78999999999999999999887654
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=96.58 E-value=0.0097 Score=47.39 Aligned_cols=115 Identities=8% Similarity=-0.052 Sum_probs=65.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHCCC---------EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHH
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRGA---------RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRK 88 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G~---------~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~ 88 (330)
++.|+||+|.+|..++..|+..+. +++...++...++....++... .......+...-.+.+
T Consensus 6 KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~---- 76 (154)
T d1y7ta1 6 RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDC-----AFPLLAGLEATDDPKV---- 76 (154)
T ss_dssp EEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTT-----TCTTEEEEEEESCHHH----
T ss_pred EEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhcc-----ccccccccccCCchhh----
Confidence 899999999999999999998752 2333345555555554444432 1222333322221211
Q ss_pred HHHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcC
Q psy13409 89 CAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSS 156 (330)
Q Consensus 89 l~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS 156 (330)
....-|++|..+|....+ ..+.. +.+..|.. +++.+.+.+.+.. +..+|.+.|
T Consensus 77 -------~~~~advViitaG~~~~p-g~~r~---dl~~~N~~----i~~~~~~~i~k~a~~~~~vivvs 130 (154)
T d1y7ta1 77 -------AFKDADYALLVGAAPRKA-GMERR---DLLQVNGK----IFTEQGRALAEVAKKDVKVLVVG 130 (154)
T ss_dssp -------HTTTCSEEEECCCCCCCT-TCCHH---HHHHHHHH----HHHHHHHHHHHHSCTTCEEEECS
T ss_pred -------hcccccEEEeecCcCCCC-CCcHH---HHHHHHHH----HHHHHHHHHHHhCCCCcEEEEec
Confidence 123469999999986432 22333 33444444 4777777777653 334444433
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.57 E-value=0.008 Score=48.27 Aligned_cols=77 Identities=19% Similarity=0.139 Sum_probs=52.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.|.+++|.|+ |++|...+..+...|++|+++++++++++... ++ +.... + |..+.+.. ..
T Consensus 27 ~g~~vlI~Ga-G~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~-~l---------Ga~~~-i--~~~~~~~~------~~ 86 (168)
T d1piwa2 27 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDAM-KM---------GADHY-I--ATLEEGDW------GE 86 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHHH-HH---------TCSEE-E--EGGGTSCH------HH
T ss_pred CCCEEEEECC-CCcchhHHHHhhhccccccccccchhHHHHhh-cc---------CCcEE-e--eccchHHH------HH
Confidence 6899999987 89999988877788999999999988876543 22 22222 2 22111111 12
Q ss_pred hcCCCeeEEEEcCCCCC
Q psy13409 95 DNESAIHLLINNAGVMM 111 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~ 111 (330)
...+..|++|.+.+...
T Consensus 87 ~~~~~~d~vi~~~~~~~ 103 (168)
T d1piwa2 87 KYFDTFDLIVVCASSLT 103 (168)
T ss_dssp HSCSCEEEEEECCSCST
T ss_pred hhhcccceEEEEecCCc
Confidence 23456899999987643
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=96.54 E-value=0.029 Score=43.80 Aligned_cols=113 Identities=20% Similarity=0.170 Sum_probs=71.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHCCC--EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRGA--RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
++.|.|+ |.+|.+++..|+.++. ++++.++++++++....++...... .........|. +++
T Consensus 2 KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~---~~~~~~~~~~~---~~~--------- 65 (140)
T d1a5za1 2 KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPF---TRRANIYAGDY---ADL--------- 65 (140)
T ss_dssp EEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGG---SCCCEEEECCG---GGG---------
T ss_pred EEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccc---cccccccCCcH---HHh---------
Confidence 5778897 8999999999998884 7999999998877666665543221 12233333332 211
Q ss_pred cCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcC
Q psy13409 96 NESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSS 156 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS 156 (330)
..-|++|.+||....+. .+. .+.+..|. .+++.+.+.+.+..+..++.+-|
T Consensus 66 --~~adivvitag~~~~~g-~~r---~dl~~~N~----~I~~~i~~~i~~~~p~aivivvt 116 (140)
T d1a5za1 66 --KGSDVVIVAAGVPQKPG-ETR---LQLLGRNA----RVMKEIARNVSKYAPDSIVIVVT 116 (140)
T ss_dssp --TTCSEEEECCCCCCCSS-CCH---HHHHHHHH----HHHHHHHHHHHHHCTTCEEEECS
T ss_pred --cCCCEEEEecccccCCC-cch---hhhhcccc----chHHHHHHHHHhcCCCcEEEEeC
Confidence 23599999999765432 222 22334443 45777777777766555555544
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=96.54 E-value=0.027 Score=44.70 Aligned_cols=121 Identities=16% Similarity=0.135 Sum_probs=73.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
+.++.|.|+ |.+|.+++..|+.++. ++++.+++.+.++....+++...........+ ...| +.++
T Consensus 3 ~~KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v--~~~~--~~~~--------- 68 (150)
T d1t2da1 3 KAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKV--SGSN--TYDD--------- 68 (150)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCE--EEEC--CGGG---------
T ss_pred CCeEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEE--Eecc--cccc---------
Confidence 356888896 9999999998888885 79999999887776666665432111122222 2221 1111
Q ss_pred hcCCCeeEEEEcCCCCCCCCCC-ChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcC
Q psy13409 95 DNESAIHLLINNAGVMMCPRQL-TEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSS 156 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~~~~-~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS 156 (330)
...-|++|.++|....+.+. ...+-.+.+..|.. +++.+.+.+.+.....++.+-|
T Consensus 69 --~~~advvvitag~~~~~g~~~~~~~R~~l~~~N~~----iv~~i~~~i~~~~p~aivivvt 125 (150)
T d1t2da1 69 --LAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNK----IMIEIGGHIKKNCPNAFIIVVT 125 (150)
T ss_dssp --GTTCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHH----HHHHHHHHHHHHCTTSEEEECS
T ss_pred --cCCCcEEEEecccccCCCCCccccchhHHHHHHHH----HHHHHHHHHHhcCCCeEEEEec
Confidence 12459999999987544222 11223344555654 4677777777766555555544
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=96.52 E-value=0.013 Score=45.97 Aligned_cols=116 Identities=15% Similarity=0.086 Sum_probs=69.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
|++.|+|+ |.+|.++|..|+.++. ++++.+.+++..+....++...........++.. ..|..+
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~-~~d~~~------------- 66 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTG-TNNYAD------------- 66 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEE-ESCGGG-------------
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEe-cCcHHH-------------
Confidence 57788896 9999999999999885 8999999888766655555432211112222321 122222
Q ss_pred cCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcC
Q psy13409 96 NESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSS 156 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS 156 (330)
...-|++|.+||....+.. + -.+.+..|. .+++.+.+.+.+..+..++.+.|
T Consensus 67 -~~~advvvitag~~~~~~~-~---r~dl~~~N~----~i~~~i~~~i~k~~p~aivivvt 118 (142)
T d1uxja1 67 -TANSDVIVVTSGAPRKPGM-S---REDLIKVNA----DITRACISQAAPLSPNAVIIMVN 118 (142)
T ss_dssp -GTTCSEEEECCSCC-------------CHHHHH----HHHHHHHHHHGGGCTTCEEEECS
T ss_pred -hcCCCEEEEeeeccCCcCc-c---hhHHHhHHH----HHHHHHHHHHhccCCCceEEEeC
Confidence 1235999999997653322 2 223334444 45788888888766555555544
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.50 E-value=0.0041 Score=50.62 Aligned_cols=80 Identities=19% Similarity=0.177 Sum_probs=53.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
.|.+++|.|+ |+||...+..+...|+ +|+++++++++++... ++ +.. .+ +|..+++-.+++ .+.
T Consensus 27 ~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~-~l---------Ga~-~~--i~~~~~~~~~~v-~~~ 91 (174)
T d1jqba2 27 MGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAK-FY---------GAT-DI--LNYKNGHIEDQV-MKL 91 (174)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHH-HH---------TCS-EE--ECGGGSCHHHHH-HHH
T ss_pred CCCEEEEEcC-CcchhhhhhhhhcccccccccccchhhhHHHHH-hh---------Ccc-cc--ccccchhHHHHH-HHH
Confidence 6889999986 8999999988888898 7999999988765543 22 221 12 344443323322 222
Q ss_pred HhcCCCeeEEEEcCCCC
Q psy13409 94 LDNESAIHLLINNAGVM 110 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~ 110 (330)
.+ ...+|++|.++|..
T Consensus 92 t~-g~G~D~vid~~g~~ 107 (174)
T d1jqba2 92 TN-GKGVDRVIMAGGGS 107 (174)
T ss_dssp TT-TSCEEEEEECSSCT
T ss_pred hh-ccCcceEEEccCCH
Confidence 11 23499999999953
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.49 E-value=0.03 Score=44.08 Aligned_cols=115 Identities=17% Similarity=0.136 Sum_probs=65.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHC-C--CEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKR-G--ARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~-G--~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
+++.|+|++|.+|.+++..|+.+ + .++++.+..+ ..+...-++.... .......+ .+-.+.+. +
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-~~~g~a~Dl~h~~----~~~~~~~~-~~~~~~~~---~---- 67 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIP----TAVKIKGF-SGEDATPA---L---- 67 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-THHHHHHHHHTSC----SSCEEEEE-CSSCCHHH---H----
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc-cchhHHHHHHCCc----cccCCcEE-EcCCCccc---c----
Confidence 46889999999999999988643 4 5899999865 3333333443321 11222222 22223222 1
Q ss_pred HhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcC
Q psy13409 94 LDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSS 156 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS 156 (330)
..-|++|..+|....+ ..+. .+.+..|..- ++.+.+.+.+.....+|.+-|
T Consensus 68 ----~~aDvvvitaG~~~k~-g~~R---~dl~~~N~~i----~~~v~~~i~~~~p~aivivvt 118 (145)
T d2cmda1 68 ----EGADVVLISAGVRRKP-GMDR---SDLFNVNAGI----VKNLVQQVAKTCPKACIGIIT 118 (145)
T ss_dssp ----TTCSEEEECCSCCCCT-TCCG---GGGHHHHHHH----HHHHHHHHHHHCTTSEEEECS
T ss_pred ----CCCCEEEECCCccCCC-Ccch---hhHHHHHHHH----HHHHHHHHHhhCCCcEEEEcc
Confidence 1249999999986433 2233 3344555443 666777777665444444443
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.46 E-value=0.0024 Score=52.20 Aligned_cols=50 Identities=36% Similarity=0.545 Sum_probs=44.1
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHh
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTS 63 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~ 63 (330)
.+++||.|+|.|+ ||.+++++..|.+.| +|.+..|+.++.+++.+.+...
T Consensus 14 ~~~~~k~vlIlGa-GG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~ 63 (177)
T d1nvta1 14 GRVKDKNIVIYGA-GGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEK 63 (177)
T ss_dssp CCCCSCEEEEECC-SHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHH
T ss_pred CCcCCCEEEEECC-cHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHh
Confidence 4689999999998 889999999998766 9999999999999888877654
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=96.43 E-value=0.022 Score=44.60 Aligned_cols=115 Identities=20% Similarity=0.134 Sum_probs=68.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHCCC--EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRGA--RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
++.|+|+ |.+|.+++..|+..|. ++++.++++++++.....+...........++ ... .+.++
T Consensus 2 KI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i--~~~--~~~~~---------- 66 (142)
T d1guza1 2 KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKV--TGS--NDYAD---------- 66 (142)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEE--EEE--SCGGG----------
T ss_pred EEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceE--Eec--CCHHH----------
Confidence 5778896 9999999999999984 89999999887665554443322111122333 222 12221
Q ss_pred cCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcC
Q psy13409 96 NESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSS 156 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS 156 (330)
...-|++|.++|....+. .+. .+.+..|.. +++.+.+.+.+..+..++.+-|
T Consensus 67 -~~dadvvvitag~~~~~g-~~r---~~l~~~N~~----i~~~i~~~i~~~~p~aivivvt 118 (142)
T d1guza1 67 -TANSDIVIITAGLPRKPG-MTR---EDLLMKNAG----IVKEVTDNIMKHSKNPIIIVVS 118 (142)
T ss_dssp -GTTCSEEEECCSCCCCTT-CCH---HHHHHHHHH----HHHHHHHHHHHHCSSCEEEECC
T ss_pred -hcCCeEEEEEEecCCCCC-Cch---HHHHHHHHH----HHHHHHHHhhccCCCeEEEEec
Confidence 124599999999764332 222 233344443 3566666666655544555544
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=96.38 E-value=0.054 Score=42.41 Aligned_cols=114 Identities=15% Similarity=0.120 Sum_probs=69.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHCCC--EEEEEecC--hhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRGA--RVIMACRS--LEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~--~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
++.|+|++|.+|.+++..|+.++. ++++.+.+ .+.++....++..... . .........|. ++
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~-~--~~~~~i~~~~~---~~-------- 67 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIA-Y--DSNTRVRQGGY---ED-------- 67 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHT-T--TCCCEEEECCG---GG--------
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhccc-c--cCCceEeeCCH---HH--------
Confidence 688999999999999999999986 68998864 3334333444443221 1 22333333343 21
Q ss_pred HhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcC
Q psy13409 94 LDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSS 156 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS 156 (330)
...-|++|..||....+. ++ -.+.++.|.. +++.+.+.+.+.....++.+-|
T Consensus 68 ---~~~aDiVvitaG~~~~~g-~~---R~dl~~~N~~----I~~~i~~~i~~~~p~~i~ivvt 119 (142)
T d1o6za1 68 ---TAGSDVVVITAGIPRQPG-QT---RIDLAGDNAP----IMEDIQSSLDEHNDDYISLTTS 119 (142)
T ss_dssp ---GTTCSEEEECCCCCCCTT-CC---HHHHHHHHHH----HHHHHHHHHHTTCSCCEEEECC
T ss_pred ---hhhcCEEEEecccccccC-Cc---hhhHHHHHHH----HHHHHHHHHHhcCCCceEEEec
Confidence 124599999999754332 22 3344555544 4778888887776544554444
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.35 E-value=0.014 Score=46.42 Aligned_cols=41 Identities=22% Similarity=0.226 Sum_probs=35.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETA 56 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~ 56 (330)
.|.+++|.|+ |+||...+..+...|++|+++++++.+++..
T Consensus 27 ~g~~VlV~Ga-G~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a 67 (166)
T d1llua2 27 PGQWVAISGI-GGLGHVAVQYARAMGLHVAAIDIDDAKLELA 67 (166)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCCEEEEeec-cccHHHHHHHHHHcCCccceecchhhHHHhh
Confidence 6899999886 9999999988888899999999998876543
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=96.34 E-value=0.0067 Score=47.93 Aligned_cols=76 Identities=14% Similarity=0.116 Sum_probs=57.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhcC
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNE 97 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~~ 97 (330)
+++|.|. |.+|..+++.|.++|.+|++++.+++...+..+... ...+.++.+|.++++.++++- .
T Consensus 5 HiII~G~-g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~--------~~~~~vi~Gd~~d~~~L~~a~------i 69 (153)
T d1id1a_ 5 HFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL--------GDNADVIPGDSNDSSVLKKAG------I 69 (153)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH--------CTTCEEEESCTTSHHHHHHHT------T
T ss_pred EEEEECC-CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhh--------cCCcEEEEccCcchHHHHHhc------c
Confidence 5888888 799999999999999999999999876555554443 346788999999987665541 2
Q ss_pred CCeeEEEEcCC
Q psy13409 98 SAIHLLINNAG 108 (330)
Q Consensus 98 g~iDvlInnAG 108 (330)
...+.+|...+
T Consensus 70 ~~a~~vi~~~~ 80 (153)
T d1id1a_ 70 DRCRAILALSD 80 (153)
T ss_dssp TTCSEEEECSS
T ss_pred ccCCEEEEccc
Confidence 34677777653
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=96.33 E-value=0.0094 Score=46.91 Aligned_cols=83 Identities=14% Similarity=0.111 Sum_probs=56.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
...-|++.|.||.|.+|..+++.|.+.|++|.+.+|+.....+.. . ....+.....+ ..++...+.+
T Consensus 6 ~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~~~~---~-------~~~~~v~~~~~---~~~~~~v~~~ 72 (152)
T d2pv7a2 6 NSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAESI---L-------ANADVVIVSVP---INLTLETIER 72 (152)
T ss_dssp CTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHHHH---H-------TTCSEEEECSC---GGGHHHHHHH
T ss_pred CCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccccchh---h-------hhccccccccc---hhhheeeeec
Confidence 445679999999999999999999999999999999876543321 1 13344443333 4456666666
Q ss_pred HHhcCCCeeEEEEcCC
Q psy13409 93 ILDNESAIHLLINNAG 108 (330)
Q Consensus 93 i~~~~g~iDvlInnAG 108 (330)
+......=.+++..+.
T Consensus 73 ~~~~~~~~~iiiD~~S 88 (152)
T d2pv7a2 73 LKPYLTENMLLADLTS 88 (152)
T ss_dssp HGGGCCTTSEEEECCS
T ss_pred ccccccCCceEEEecc
Confidence 6665433345665554
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=96.29 E-value=0.0016 Score=52.98 Aligned_cols=44 Identities=27% Similarity=0.410 Sum_probs=37.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAA 57 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~ 57 (330)
.++.+|||+||+||+|.+.+......|++|+.+.+++++.+.+.
T Consensus 22 ~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~ 65 (167)
T d1tt7a2 22 PEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLK 65 (167)
T ss_dssp GGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHH
T ss_pred CCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHH
Confidence 35778999999999999988777778999999999988766543
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.29 E-value=0.045 Score=42.86 Aligned_cols=116 Identities=16% Similarity=0.116 Sum_probs=71.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCC--EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGA--RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
+++.|.|+ |.+|.+++..|+.+|. ++++++++++.++....+++..........++. ...|..+
T Consensus 1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~-~~~d~~~------------ 66 (142)
T d1ojua1 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIV-GGADYSL------------ 66 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEE-EESCGGG------------
T ss_pred CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccc-cCCCHHH------------
Confidence 36778896 9999999999998885 699999998887665555554322211222222 2223321
Q ss_pred hcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcC
Q psy13409 95 DNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSS 156 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS 156 (330)
...-|++|..||....+ ..+. .+.+..|. .+++.+.+.+.+.....++.+.|
T Consensus 67 --~~~adiVvitag~~~~~-g~~r---~~l~~~n~----~i~~~i~~~i~~~~p~aivivvt 118 (142)
T d1ojua1 67 --LKGSEIIVVTAGLARKP-GMTR---LDLAHKNA----GIIKDIAKKIVENAPESKILVVT 118 (142)
T ss_dssp --GTTCSEEEECCCCCCCS-SCCH---HHHHHHHH----HHHHHHHHHHHTTSTTCEEEECS
T ss_pred --hccccEEEEeccccCCC-CCch---HHHHHHhh----HHHHHHHHHHHhhCCCcEEEEec
Confidence 12359999999965433 2222 33333444 34777777777766555555555
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.27 E-value=0.011 Score=47.27 Aligned_cols=75 Identities=19% Similarity=0.256 Sum_probs=52.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.|.+++|.|+ |+||...+..+...|+++++++++.++.+. .+++ +... ..|..+.+.. .
T Consensus 30 ~G~~VlI~Ga-G~vG~~a~qlak~~Ga~~i~~~~~~~~~~~-a~~l---------Gad~---~i~~~~~~~~-------~ 88 (168)
T d1uufa2 30 PGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKREA-AKAL---------GADE---VVNSRNADEM-------A 88 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHHH-HHHH---------TCSE---EEETTCHHHH-------H
T ss_pred CCCEEEEecc-chHHHHHHHHhhcccccchhhccchhHHHH-Hhcc---------CCcE---EEECchhhHH-------H
Confidence 6899999986 899999988888889999999999887643 3333 2222 1355554432 1
Q ss_pred hcCCCeeEEEEcCCCC
Q psy13409 95 DNESAIHLLINNAGVM 110 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~ 110 (330)
.....+|++|.++|..
T Consensus 89 ~~~~~~D~vid~~g~~ 104 (168)
T d1uufa2 89 AHLKSFDFILNTVAAP 104 (168)
T ss_dssp TTTTCEEEEEECCSSC
T ss_pred HhcCCCceeeeeeecc
Confidence 2235799999999853
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=96.20 E-value=0.092 Score=41.04 Aligned_cols=114 Identities=18% Similarity=0.182 Sum_probs=70.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHCCC--EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRGA--RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
++.|+|+ |.+|.++|..|+.+|. +++++++++++++....+++...... ....+ ....|..+
T Consensus 3 Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~-~~~~i-~~~~~~~~------------- 66 (143)
T d1llda1 3 KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFY-PTVSI-DGSDDPEI------------- 66 (143)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGS-TTCEE-EEESCGGG-------------
T ss_pred EEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccC-CCcee-ecCCCHHH-------------
Confidence 4677797 9999999999999986 79999999987766655665432221 12222 22223211
Q ss_pred cCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcC
Q psy13409 96 NESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSS 156 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS 156 (330)
...-|++|..||....+ ..+.. +.+..|. .+++.+.+.+.+.....++.+.|
T Consensus 67 -~~daDvVVitaG~~~~~-g~~R~---dl~~~N~----~i~~~i~~~i~~~~p~ai~ivvt 118 (143)
T d1llda1 67 -CRDADMVVITAGPRQKP-GQSRL---ELVGATV----NILKAIMPNLVKVAPNAIYMLIT 118 (143)
T ss_dssp -GTTCSEEEECCCCCCCT-TCCHH---HHHHHHH----HHHHHHHHHHHHHCTTSEEEECC
T ss_pred -hhCCcEEEEecccccCC-CCchh---hhhhhhH----HHHHHHHHHHHhhCCCeEEEEeC
Confidence 12359999999976433 22322 3444554 44677777777766555555544
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.16 E-value=0.0082 Score=48.55 Aligned_cols=79 Identities=13% Similarity=0.207 Sum_probs=52.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCE-EEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGAR-VIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~-Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
-.|.+++|.|+ |+||...+..+...|+. |+++++++.+++.+. ++ +.. .+ .|..+++ +.+.+++
T Consensus 27 ~~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~-~~---------Ga~-~~--i~~~~~~-~~~~i~~ 91 (174)
T d1f8fa2 27 TPASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRLELAK-QL---------GAT-HV--INSKTQD-PVAAIKE 91 (174)
T ss_dssp CTTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH-HH---------TCS-EE--EETTTSC-HHHHHHH
T ss_pred CCCCEEEEeCC-CHHHhhhhhcccccccceeeeeccHHHHHHHHH-Hc---------CCe-EE--EeCCCcC-HHHHHHH
Confidence 36899999997 89999999888888885 566778887765543 22 211 22 2444433 3333333
Q ss_pred HHhcCCCeeEEEEcCCC
Q psy13409 93 ILDNESAIHLLINNAGV 109 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~ 109 (330)
+ ..+.+|++|.+.|.
T Consensus 92 ~--t~gg~D~vid~~G~ 106 (174)
T d1f8fa2 92 I--TDGGVNFALESTGS 106 (174)
T ss_dssp H--TTSCEEEEEECSCC
T ss_pred H--cCCCCcEEEEcCCc
Confidence 3 23479999999984
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=96.15 E-value=0.0036 Score=51.35 Aligned_cols=43 Identities=23% Similarity=0.302 Sum_probs=37.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETA 56 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~ 56 (330)
.++.++||+||+||+|...+...-..|++|+.+.+++++.+.+
T Consensus 30 ~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~ 72 (177)
T d1o89a2 30 PQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYL 72 (177)
T ss_dssp GGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH
T ss_pred CCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHH
Confidence 4567999999999999998888888999999999998886544
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=96.13 E-value=0.0072 Score=48.79 Aligned_cols=81 Identities=20% Similarity=0.281 Sum_probs=54.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
.|.+++|.|+ +|+|...+..+...|+ +|+++++++++++...+. +..-.+...|- .+.++...+..
T Consensus 28 ~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~----------Ga~~~i~~~~~--~~~~~~~~~~~ 94 (176)
T d2jhfa2 28 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV----------GATECVNPQDY--KKPIQEVLTEM 94 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----------TCSEEECGGGC--SSCHHHHHHHH
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh----------CCeeEEecCCc--hhHHHHHHHHH
Confidence 7899999999 7899999999999986 899999999886644321 22222211121 22344444433
Q ss_pred HhcCCCeeEEEEcCCCC
Q psy13409 94 LDNESAIHLLINNAGVM 110 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~ 110 (330)
..+.+|++|.+.|..
T Consensus 95 --~~~G~D~vid~~G~~ 109 (176)
T d2jhfa2 95 --SNGGVDFSFEVIGRL 109 (176)
T ss_dssp --TTSCBSEEEECSCCH
T ss_pred --hcCCCCEEEecCCch
Confidence 234689999999853
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.12 E-value=0.016 Score=47.02 Aligned_cols=80 Identities=20% Similarity=0.242 Sum_probs=54.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHH-HHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKS-VRKCAQ 91 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~s-i~~l~~ 91 (330)
-.|.+++|+|+ ||+|...+..+...|+ +|+++++++++++...+ + +....+ |..+.+. .+...+
T Consensus 28 ~~g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~-~---------GA~~~i---n~~~~~~~~~~~~~ 93 (176)
T d1d1ta2 28 KPGSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMA-V---------GATECI---SPKDSTKPISEVLS 93 (176)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH-H---------TCSEEE---CGGGCSSCHHHHHH
T ss_pred CCCCEEEEECC-CchhHHHHHHHHHcCCceEEEecCcHHHHHHHHh-c---------CCcEEE---CccccchHHHHHHH
Confidence 36999999987 9999999999999996 89999999998775433 2 333322 2222222 222222
Q ss_pred HHHhcCCCeeEEEEcCCC
Q psy13409 92 EILDNESAIHLLINNAGV 109 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~ 109 (330)
.. ....+|++|.+.|.
T Consensus 94 ~~--~g~G~d~vi~~~g~ 109 (176)
T d1d1ta2 94 EM--TGNNVGYTFEVIGH 109 (176)
T ss_dssp HH--HTSCCCEEEECSCC
T ss_pred Hh--ccccceEEEEeCCc
Confidence 22 22468999999984
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=96.09 E-value=0.017 Score=45.95 Aligned_cols=88 Identities=16% Similarity=0.208 Sum_probs=57.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHH--Hhhc--ccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIR--TSLK--DVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~--~~~~--~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
+++.|.|. |-+|..+|+.|.+.|++|++.+|+++..++..+.-. .... +.-...++.++-+ ..+++++++++
T Consensus 1 MkI~iIG~-G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilav---p~~~~~~vl~~ 76 (165)
T d2f1ka2 1 MKIGVVGL-GLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCT---PIQLILPTLEK 76 (165)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECS---CHHHHHHHHHH
T ss_pred CEEEEEee-cHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccC---cHhhhhhhhhh
Confidence 35778877 999999999999999999999999887665543210 0000 0112344544433 35678888888
Q ss_pred HHhcCCCeeEEEEcCC
Q psy13409 93 ILDNESAIHLLINNAG 108 (330)
Q Consensus 93 i~~~~g~iDvlInnAG 108 (330)
+.+....=.++++.++
T Consensus 77 l~~~l~~~~iv~~~~s 92 (165)
T d2f1ka2 77 LIPHLSPTAIVTDVAS 92 (165)
T ss_dssp HGGGSCTTCEEEECCS
T ss_pred hhhhcccccceeeccc
Confidence 8765544456666554
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=96.08 E-value=0.0043 Score=50.21 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=39.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDI 60 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l 60 (330)
++|.++|.|+ ||.+++++..|.+.|+ +|.++.|+.++.+.+.+.+
T Consensus 16 ~~~~vlIlGa-GGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~ 61 (167)
T d1npya1 16 KNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALY 61 (167)
T ss_dssp TTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHH
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhh
Confidence 6889999998 9999999999999997 7999999998877766544
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.08 E-value=0.0025 Score=46.45 Aligned_cols=38 Identities=16% Similarity=0.220 Sum_probs=34.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChh
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLE 51 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~ 51 (330)
+++||+++|.|. |.-|.++|+.|.++|++|++.+.+..
T Consensus 2 ~~~~K~v~ViGl-G~sG~s~a~~L~~~g~~v~~~D~~~~ 39 (93)
T d2jfga1 2 DYQGKNVVIIGL-GLTGLSCVDFFLARGVTPRVMDTRMT 39 (93)
T ss_dssp CCTTCCEEEECC-SHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred CcCCCEEEEEeE-CHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence 589999999999 77899999999999999999998654
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=95.97 E-value=0.0066 Score=48.87 Aligned_cols=41 Identities=24% Similarity=0.180 Sum_probs=37.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHH
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAA 57 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~ 57 (330)
.|++.|.|+ |.+|.++|..|++.|++|.+.+|+++..+.+.
T Consensus 1 sk~iaIiGa-G~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~ 41 (184)
T d1bg6a2 1 SKTYAVLGL-GNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQ 41 (184)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 488999999 99999999999999999999999988766654
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=95.92 E-value=0.029 Score=43.94 Aligned_cols=114 Identities=20% Similarity=0.151 Sum_probs=64.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCC--EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGA--RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
+++.|+|+ |.+|..++..|+.++. ++++++++.+.++....++..... ..........|. ++
T Consensus 2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~---~~~~~~~~~~~~---~~--------- 65 (142)
T d1y6ja1 2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLP---FMGQMSLYAGDY---SD--------- 65 (142)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCC---CTTCEEEC--CG---GG---------
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcc---cCCCeeEeeCcH---HH---------
Confidence 45667787 9999999999999985 799999998776555555543211 122333322222 11
Q ss_pred hcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcC
Q psy13409 95 DNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSS 156 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS 156 (330)
...-|++|..||....+. .+ -.+.+..|. .+++.+.+.+.+.....++.+-|
T Consensus 66 --~~~adivvitag~~~~~~-~~---r~~l~~~N~----~i~~~i~~~i~~~~p~ai~ivvt 117 (142)
T d1y6ja1 66 --VKDCDVIVVTAGANRKPG-ET---RLDLAKKNV----MIAKEVTQNIMKYYNHGVILVVS 117 (142)
T ss_dssp --GTTCSEEEECCCC-------C---HHHHHHHHH----HHHHHHHHHHHHHCCSCEEEECS
T ss_pred --hCCCceEEEecccccCcC-cc---hhHHhhHHH----HHHHHHHHHhhccCCCceEEEec
Confidence 124599999999764332 22 233444554 44677777777765444444444
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=95.87 E-value=0.018 Score=47.26 Aligned_cols=45 Identities=22% Similarity=0.234 Sum_probs=39.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRT 62 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~ 62 (330)
|++.|.|+ |-+|..+|..++..|++|++.+++++.+++..+.+..
T Consensus 5 ~~vaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~ 49 (186)
T d1wdka3 5 KQAAVLGA-GIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAK 49 (186)
T ss_dssp SSEEEECC-HHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHH
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhh
Confidence 56889999 8899999999999999999999999887777666543
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.86 E-value=0.0084 Score=49.62 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=41.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHh
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTS 63 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~ 63 (330)
|++.|.|+ |-+|..+|..++..|++|++.+++++.+++..+.+++.
T Consensus 5 kkvaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~ 50 (192)
T d1f0ya2 5 KHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEES 50 (192)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHH
T ss_pred EEEEEECc-CHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHH
Confidence 78999999 88999999999999999999999998888777766543
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=95.73 E-value=0.078 Score=42.92 Aligned_cols=116 Identities=10% Similarity=-0.037 Sum_probs=64.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCC---C----EEEEEecCh--hHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRG---A----RVIMACRSL--EKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVR 87 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G---~----~Vil~~R~~--~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~ 87 (330)
.+|.||||+|.||..++..|++.+ . .+.+.+... ..++...-+++... ...+..+..- ++. .
T Consensus 25 ~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a-----~~~~~~~~~~-~~~---~ 95 (175)
T d7mdha1 25 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSL-----YPLLREVSIG-IDP---Y 95 (175)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTT-----CTTEEEEEEE-SCH---H
T ss_pred cEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccc-----cccccCcccc-ccc---h
Confidence 469999999999999999999753 1 455555543 33444444443321 1111111111 111 1
Q ss_pred HHHHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhC-CCeEEEEcC
Q psy13409 88 KCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSA-PARIINLSS 156 (330)
Q Consensus 88 ~l~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~-~g~IV~iSS 156 (330)
+.+...|++|..+|....+ .++.. +.+..|. .+++.+.+.+.+.. +..+|.+.|
T Consensus 96 -------~~~~~aDvVvi~ag~~rkp-g~tR~---Dll~~N~----~I~k~~~~~i~~~a~~~~~vlvv~ 150 (175)
T d7mdha1 96 -------EVFEDVDWALLIGAKPRGP-GMERA---ALLDING----QIFADQGKALNAVASKNVKVLVVG 150 (175)
T ss_dssp -------HHTTTCSEEEECCCCCCCT-TCCHH---HHHHHHH----HHHHHHHHHHHHHSCTTCEEEECS
T ss_pred -------hhccCCceEEEeeccCCCC-CCcHH---HHHHHHH----HHHHHHHHHHHhhCCCCcEEEEec
Confidence 1234579999999986433 33333 3444453 44677777777753 344444444
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=95.66 E-value=0.015 Score=47.03 Aligned_cols=80 Identities=19% Similarity=0.223 Sum_probs=54.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHH-HHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKS-VRKCAQ 91 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~s-i~~l~~ 91 (330)
-.|.+++|.|+ ||+|...+..+...|+ +|+++++++++++...+ + +..- ++ |.++.+. ++....
T Consensus 26 ~~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~-l---------Ga~~-~i--~~~~~d~~~~~~~~ 91 (174)
T d1p0fa2 26 TPGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE-L---------GATE-CL--NPKDYDKPIYEVIC 91 (174)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH-T---------TCSE-EE--CGGGCSSCHHHHHH
T ss_pred CCCCEEEEECC-CchhHHHHHHHHHcCCceeeccCChHHHHHHHHH-c---------CCcE-EE--cCCCchhHHHHHHH
Confidence 47899999986 9999999999999997 79999999988765432 1 2222 22 3333221 233332
Q ss_pred HHHhcCCCeeEEEEcCCC
Q psy13409 92 EILDNESAIHLLINNAGV 109 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~ 109 (330)
.. ..+..|++|.++|.
T Consensus 92 ~~--~~~G~d~vid~~g~ 107 (174)
T d1p0fa2 92 EK--TNGGVDYAVECAGR 107 (174)
T ss_dssp HH--TTSCBSEEEECSCC
T ss_pred Hh--cCCCCcEEEEcCCC
Confidence 22 33469999999984
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=95.63 E-value=0.033 Score=44.52 Aligned_cols=78 Identities=17% Similarity=0.211 Sum_probs=51.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
.|.+++|.|+ |++|...+..+...|+ .|+++++++++++...+. +.. .++ |.++ +.++...+..
T Consensus 32 ~g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~----------ga~-~~i--~~~~-~~~~~~~~~~ 96 (172)
T d1h2ba2 32 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL----------GAD-HVV--DARR-DPVKQVMELT 96 (172)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT----------TCS-EEE--ETTS-CHHHHHHHHT
T ss_pred CCCEEEEeCC-ChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc----------ccc-eee--cCcc-cHHHHHHHhh
Confidence 5899999986 9999998888888886 678888988775544321 222 222 3332 3344433321
Q ss_pred HhcCCCeeEEEEcCCC
Q psy13409 94 LDNESAIHLLINNAGV 109 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~ 109 (330)
....+|++|.++|.
T Consensus 97 --~~~g~d~vid~~g~ 110 (172)
T d1h2ba2 97 --RGRGVNVAMDFVGS 110 (172)
T ss_dssp --TTCCEEEEEESSCC
T ss_pred --CCCCceEEEEecCc
Confidence 12359999999984
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=95.56 E-value=0.037 Score=44.53 Aligned_cols=93 Identities=12% Similarity=0.079 Sum_probs=60.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcc---------cCCCCeEEEEEccCCCHHHH
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKD---------VKDAGEVVIRQLDLSSLKSV 86 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~---------~~~~~~v~~i~~Dls~~~si 86 (330)
.+.|-|.|- |-+|..+|+.|++.|++|++.+|++++.+++.+.-...... ...-.....+...+.+.+.+
T Consensus 2 ~~nIg~IGl-G~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v 80 (176)
T d2pgda2 2 QADIALIGL-AVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAV 80 (176)
T ss_dssp CBSEEEECC-SHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHH
T ss_pred CCcEEEEeE-hHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHH
Confidence 356778887 99999999999999999999999998877765431100000 00011122333456666777
Q ss_pred HHHHHHHHhcCCCeeEEEEcCCC
Q psy13409 87 RKCAQEILDNESAIHLLINNAGV 109 (330)
Q Consensus 87 ~~l~~~i~~~~g~iDvlInnAG~ 109 (330)
....+.+......-+++|.+...
T Consensus 81 ~~v~~~l~~~~~~g~iiid~sT~ 103 (176)
T d2pgda2 81 DNFIEKLVPLLDIGDIIIDGGNS 103 (176)
T ss_dssp HHHHHHHHHHCCTTCEEEECSCC
T ss_pred HHHHHHHHhccccCcEEEecCcc
Confidence 77777776655445677777654
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.52 E-value=0.021 Score=45.68 Aligned_cols=79 Identities=18% Similarity=0.226 Sum_probs=52.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCC-HHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSS-LKSVRKCAQE 92 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~-~~si~~l~~~ 92 (330)
.|.+++|.|+ ||+|...+..+...|+ .|+++++++.+++. .+++ +..- ++ |..+ .+.+.+.++.
T Consensus 28 ~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~-ak~l---------Ga~~-~i--~~~~~~~~~~~~~~~ 93 (176)
T d2fzwa2 28 PGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKFAR-AKEF---------GATE-CI--NPQDFSKPIQEVLIE 93 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHH-HHHH---------TCSE-EE--CGGGCSSCHHHHHHH
T ss_pred CCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcccHHHHHH-HHHh---------CCcE-EE--eCCchhhHHHHHHHH
Confidence 6899999998 6999999998888996 67888888877543 3333 2221 22 2222 2334444443
Q ss_pred HHhcCCCeeEEEEcCCC
Q psy13409 93 ILDNESAIHLLINNAGV 109 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~ 109 (330)
. ..+.+|++|.+.|.
T Consensus 94 ~--~~~g~D~vid~~G~ 108 (176)
T d2fzwa2 94 M--TDGGVDYSFECIGN 108 (176)
T ss_dssp H--TTSCBSEEEECSCC
T ss_pred H--cCCCCcEeeecCCC
Confidence 3 23469999999984
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.39 E-value=0.05 Score=42.87 Aligned_cols=41 Identities=24% Similarity=0.263 Sum_probs=35.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETA 56 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~ 56 (330)
.|.+++|.|+ |+||...+..+...|++|+++++++++++..
T Consensus 27 ~g~~vlv~G~-G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~ 67 (168)
T d1rjwa2 27 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLELA 67 (168)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred CCCEEEEeec-ccchhhhhHHHhcCCCeEeccCCCHHHhhhh
Confidence 6889999975 9999999888888999999999999886644
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.31 E-value=0.023 Score=46.90 Aligned_cols=80 Identities=19% Similarity=0.192 Sum_probs=52.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
.|.+++|.|+ |+||...+..+...|+ +|+++++++++++...+ .+... ..|-.+.+ +.+-+.++
T Consensus 25 ~G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~----------~Ga~~---~~~~~~~~-~~~~i~~~ 89 (195)
T d1kola2 25 PGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA----------QGFEI---ADLSLDTP-LHEQIAAL 89 (195)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----------TTCEE---EETTSSSC-HHHHHHHH
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhhcccceeeecccchhhHhhhh----------ccccE---EEeCCCcC-HHHHHHHH
Confidence 6899999987 8999888887777787 79999999887754432 13322 22333333 33333333
Q ss_pred HhcCCCeeEEEEcCCCC
Q psy13409 94 LDNESAIHLLINNAGVM 110 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~ 110 (330)
. .....|++|.+.|..
T Consensus 90 t-~g~g~D~vid~vG~~ 105 (195)
T d1kola2 90 L-GEPEVDCAVDAVGFE 105 (195)
T ss_dssp H-SSSCEEEEEECCCTT
T ss_pred h-CCCCcEEEEECcccc
Confidence 2 234689999999854
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=95.21 E-value=0.043 Score=44.25 Aligned_cols=80 Identities=23% Similarity=0.234 Sum_probs=53.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCH-HHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSL-KSVRKCAQ 91 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~-~si~~l~~ 91 (330)
-.|.+++|.|+ |+||...+..+...|+ .|+++++++++++... ++ +... ++ |.... +..+...+
T Consensus 27 ~~G~~VlV~G~-G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~-~~---------Ga~~-~i--~~~~~~~~~~~~~~ 92 (174)
T d1e3ia2 27 TPGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK-AL---------GATD-CL--NPRELDKPVQDVIT 92 (174)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HT---------TCSE-EE--CGGGCSSCHHHHHH
T ss_pred CCCCEEEEECC-ChHHHHHHHHHHHhCCceeeeeccchHHHHHHH-Hh---------CCCc-cc--CCccchhhhhhhHh
Confidence 36899999976 9999999999999998 6888999988764432 22 2222 22 22221 22333333
Q ss_pred HHHhcCCCeeEEEEcCCC
Q psy13409 92 EILDNESAIHLLINNAGV 109 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~ 109 (330)
.. ..+.+|++|.++|.
T Consensus 93 ~~--~~~G~d~vie~~G~ 108 (174)
T d1e3ia2 93 EL--TAGGVDYSLDCAGT 108 (174)
T ss_dssp HH--HTSCBSEEEESSCC
T ss_pred hh--hcCCCcEEEEeccc
Confidence 33 23479999999994
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.14 E-value=0.0082 Score=47.36 Aligned_cols=37 Identities=16% Similarity=0.350 Sum_probs=33.5
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecC
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRS 49 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~ 49 (330)
.+|+||++||+|| |.+|..-++.|++.|++|++++..
T Consensus 9 ~~l~gkrvLViGg-G~va~~ka~~Ll~~GA~VtVvap~ 45 (150)
T d1kyqa1 9 HQLKDKRILLIGG-GEVGLTRLYKLMPTGCKLTLVSPD 45 (150)
T ss_dssp ECCTTCEEEEEEE-SHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred eeeCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4699999999999 779999999999999999998654
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=94.88 E-value=0.07 Score=42.42 Aligned_cols=80 Identities=16% Similarity=0.211 Sum_probs=52.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHH-HHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKS-VRKCAQ 91 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~s-i~~l~~ 91 (330)
-.|.+++|.|+ ||+|...+..+...|. .|+++++++++++...+ + +..- ++ |..+++. +++..+
T Consensus 27 k~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~-~---------GAd~-~i--n~~~~~~~~~~~~~ 92 (175)
T d1cdoa2 27 EPGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV-F---------GATD-FV--NPNDHSEPISQVLS 92 (175)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH-T---------TCCE-EE--CGGGCSSCHHHHHH
T ss_pred CCCCEEEEEec-CCccchHHHHHHHHhhchheeecchHHHHHHHHH-c---------CCcE-EE--cCCCcchhHHHHHH
Confidence 37899999987 7788888888888876 79999999988765432 1 2222 22 3333222 233333
Q ss_pred HHHhcCCCeeEEEEcCCC
Q psy13409 92 EILDNESAIHLLINNAGV 109 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~ 109 (330)
.. ..+.+|++|.+.|.
T Consensus 93 ~~--~~~G~d~vid~~G~ 108 (175)
T d1cdoa2 93 KM--TNGGVDFSLECVGN 108 (175)
T ss_dssp HH--HTSCBSEEEECSCC
T ss_pred hh--ccCCcceeeeecCC
Confidence 22 22468999999984
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=94.81 E-value=0.028 Score=46.81 Aligned_cols=44 Identities=32% Similarity=0.438 Sum_probs=38.7
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETA 56 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~ 56 (330)
.+|+||+++|-|- |.+|.++++.|.+.|++|++.+.+...+...
T Consensus 23 ~~L~gk~v~IqG~-G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~ 66 (201)
T d1c1da1 23 GSLDGLTVLVQGL-GAVGGSLASLAAEAGAQLLVADTDTERVAHA 66 (201)
T ss_dssp CCSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEecchHHHHHHH
Confidence 3699999999985 8899999999999999999999988765543
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.80 E-value=0.26 Score=40.23 Aligned_cols=39 Identities=26% Similarity=0.191 Sum_probs=33.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETA 56 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~ 56 (330)
+++.|.|. |-+|..+|..|++.|++|++.+.+.+..+.+
T Consensus 1 MkI~ViGl-G~vGl~~a~~la~~g~~V~g~D~n~~~i~~l 39 (202)
T d1mv8a2 1 MRISIFGL-GYVGAVCAGCLSARGHEVIGVDVSSTKIDLI 39 (202)
T ss_dssp CEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred CEEEEECC-CHhHHHHHHHHHhCCCcEEEEeCCHHHHHHh
Confidence 35777866 9999999999999999999999998765544
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=94.79 E-value=0.091 Score=41.45 Aligned_cols=90 Identities=17% Similarity=0.145 Sum_probs=52.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhccc-CCCCeEEEEEccCCCHHHHHHHH---HHH
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDV-KDAGEVVIRQLDLSSLKSVRKCA---QEI 93 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~-~~~~~v~~i~~Dls~~~si~~l~---~~i 93 (330)
+|-|.|- |-+|..+|+.|++.|++|++.+|++++.++..+.-....... ..-.+..++.+-+.+.++++.++ +.+
T Consensus 2 kIgiIGl-G~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~ 80 (161)
T d1vpda2 2 KVGFIGL-GIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI 80 (161)
T ss_dssp EEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred EEEEEeh-hHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcch
Confidence 4677776 999999999999999999999999988776543210000000 00011223334556666666665 223
Q ss_pred HhcCCCeeEEEEcCC
Q psy13409 94 LDNESAIHLLINNAG 108 (330)
Q Consensus 94 ~~~~g~iDvlInnAG 108 (330)
.....+-+++|.+..
T Consensus 81 ~~~~~~g~iiid~sT 95 (161)
T d1vpda2 81 IEGAKPGTVLIDMSS 95 (161)
T ss_dssp HHHCCTTCEEEECSC
T ss_pred hhccCCCCEEEECCC
Confidence 333223356666554
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=94.76 E-value=0.034 Score=47.23 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=32.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecC
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRS 49 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~ 49 (330)
+|++++|+|.|+ ||+|..++..|+..|. +++++|.+
T Consensus 27 kL~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D 63 (247)
T d1jw9b_ 27 ALKDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFD 63 (247)
T ss_dssp HHHHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred HHhCCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCc
Confidence 588999999997 9999999999999998 79998853
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=94.62 E-value=0.091 Score=39.27 Aligned_cols=72 Identities=18% Similarity=0.212 Sum_probs=54.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
...+.++.|.|| |-+|+.++....+.|++|++.+.+++.... ...-.++..|+.|.+.+..+...
T Consensus 8 ~~~~~kigIlGg-GQL~rMla~aA~~lG~~v~v~d~~~~~PA~--------------~va~~~i~~~~~d~~~l~~~~~~ 72 (111)
T d1kjqa2 8 RPAATRVMLLGS-GELGKEVAIECQRLGVEVIAVDRYADAPAM--------------HVAHRSHVINMLDGDALRRVVEL 72 (111)
T ss_dssp STTCCEEEEESC-SHHHHHHHHHHHTTTCEEEEEESSTTCGGG--------------GGSSEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEEeC-CHHHHHHHHHHHHCCCEEEEEcCCCCCchh--------------hcCCeEEECCCCCHHHHHHHHHh
Confidence 345678999997 899999999999999999999987653211 01125678999999998888765
Q ss_pred HHhcCCCeeEEE
Q psy13409 93 ILDNESAIHLLI 104 (330)
Q Consensus 93 i~~~~g~iDvlI 104 (330)
. .+|++.
T Consensus 73 ~-----~~DviT 79 (111)
T d1kjqa2 73 E-----KPHYIV 79 (111)
T ss_dssp H-----CCSEEE
T ss_pred h-----CCceEE
Confidence 4 467764
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=94.51 E-value=0.016 Score=44.23 Aligned_cols=70 Identities=14% Similarity=0.155 Sum_probs=49.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhc
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN 96 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~ 96 (330)
|+++|.|. |.+|..+++.|. |..|+++..+++..+... . ..+.++.+|.++++.++++ .
T Consensus 1 kHivI~G~-g~~g~~l~~~L~--~~~i~vi~~d~~~~~~~~----~--------~~~~~i~Gd~~~~~~L~~a------~ 59 (129)
T d2fy8a1 1 RHVVICGW-SESTLECLRELR--GSEVFVLAEDENVRKKVL----R--------SGANFVHGDPTRVSDLEKA------N 59 (129)
T ss_dssp CCEEEESC-CHHHHHHHHTSC--GGGEEEEESCTTHHHHHH----H--------TTCEEEESCTTSHHHHHHT------T
T ss_pred CEEEEECC-CHHHHHHHHHHc--CCCCEEEEcchHHHHHHH----h--------cCccccccccCCHHHHHHh------h
Confidence 67899987 889999999994 667888888887655432 1 2467788999998765543 2
Q ss_pred CCCeeEEEEcC
Q psy13409 97 ESAIHLLINNA 107 (330)
Q Consensus 97 ~g~iDvlInnA 107 (330)
..+-+.+|.+.
T Consensus 60 i~~A~~vi~~~ 70 (129)
T d2fy8a1 60 VRGARAVIVNL 70 (129)
T ss_dssp CTTCSEEEECC
T ss_pred hhcCcEEEEec
Confidence 23456666544
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.47 E-value=0.21 Score=39.16 Aligned_cols=105 Identities=7% Similarity=-0.067 Sum_probs=57.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHCCC-------EEEEEecChh--HHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHH
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRGA-------RVIMACRSLE--KAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRK 88 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G~-------~Vil~~R~~~--~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~ 88 (330)
++.|+||+|.+|.+++..|++.+. .+++.+.+.. .++...-++.... ......+.. ++.+ +
T Consensus 5 KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~--~~~~--~- 74 (154)
T d5mdha1 5 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCA-----LPLLKDVIA--TDKE--E- 74 (154)
T ss_dssp EEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTC-----CTTEEEEEE--ESCH--H-
T ss_pred EEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccc-----ccccccccc--Cccc--c-
Confidence 789999999999999999987542 3555555432 2333322222211 111111111 1111 1
Q ss_pred HHHHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy13409 89 CAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKS 146 (330)
Q Consensus 89 l~~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~ 146 (330)
+.....|++|..+|....+.+ +.++ .++.|. .+++.+.+.+.+.
T Consensus 75 ------~~~~~~dvVVitag~~~~~g~-sr~d---ll~~N~----~i~k~~~~~i~k~ 118 (154)
T d5mdha1 75 ------IAFKDLDVAILVGSMPRRDGM-ERKD---LLKANV----KIFKCQGAALDKY 118 (154)
T ss_dssp ------HHTTTCSEEEECCSCCCCTTC-CTTT---THHHHH----HHHHHHHHHHHHH
T ss_pred ------cccCCceEEEEecccCCCCCC-chhH---HHHHhH----HHHHHHHHHHHhh
Confidence 112356999999998764432 2222 233444 3467777777665
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=94.44 E-value=0.034 Score=44.89 Aligned_cols=43 Identities=21% Similarity=0.260 Sum_probs=38.3
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKA 53 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l 53 (330)
..++.||+++|.|-|.-+|+-++..|.++|++|+++.+....+
T Consensus 32 ~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~~l 74 (166)
T d1b0aa1 32 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNL 74 (166)
T ss_dssp TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCH
T ss_pred CcccccceEEEEeccccccHHHHHHHHHhhccccccccccchh
Confidence 3579999999999999999999999999999999988766543
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=94.42 E-value=0.067 Score=43.91 Aligned_cols=40 Identities=20% Similarity=0.130 Sum_probs=35.6
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChh
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLE 51 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~ 51 (330)
..+++||++.|.|. |.||+.+++.+...|.+|+..++...
T Consensus 42 ~~~l~g~tvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~ 81 (191)
T d1gdha1 42 GEKLDNKTLGIYGF-GSIGQALAKRAQGFDMDIDYFDTHRA 81 (191)
T ss_dssp BCCCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSCC
T ss_pred cceecccceEEeec-ccchHHHHHHHHhhcccccccccccc
Confidence 34688999999998 99999999999999999999987654
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=94.23 E-value=0.022 Score=44.81 Aligned_cols=35 Identities=23% Similarity=0.207 Sum_probs=31.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEK 52 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~ 52 (330)
++|+|.|+ |.||..++..|++.|++|.+++|+...
T Consensus 1 MkI~IiGa-G~iG~~~a~~L~~~G~~V~~~~r~~~~ 35 (167)
T d1ks9a2 1 MKITVLGC-GALGQLWLTALCKQGHEVQGWLRVPQP 35 (167)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCCceEEEEcCHHH
Confidence 47899999 999999999999999999999998753
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.20 E-value=0.032 Score=45.23 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=39.4
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAE 54 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~ 54 (330)
..+++||.++|.|-|.-+|+-++..|+++|++|.++++....+.
T Consensus 34 ~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~l~ 77 (170)
T d1a4ia1 34 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLD 77 (170)
T ss_dssp TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHH
T ss_pred CcccccceEEEEecCCccchHHHHHHHhccCceEEEecccccHH
Confidence 45799999999999999999999999999999999988765543
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.18 E-value=0.057 Score=43.36 Aligned_cols=41 Identities=37% Similarity=0.458 Sum_probs=37.4
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEK 52 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~ 52 (330)
+..|.||+++|.|- |.||+.+|+.|...|++|+++..++-+
T Consensus 19 ~~~l~Gk~v~V~Gy-G~iG~g~A~~~rg~G~~V~v~e~dp~~ 59 (163)
T d1li4a1 19 DVMIAGKVAVVAGY-GDVGKGCAQALRGFGARVIITEIDPIN 59 (163)
T ss_dssp CCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred CceecCCEEEEecc-ccccHHHHHHHHhCCCeeEeeecccch
Confidence 45689999999998 799999999999999999999999754
|
| >d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Phosphopantothenoylcysteine synthetase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.09 E-value=0.061 Score=47.19 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=21.6
Q ss_pred CchHHHHHHHHHHCCCEEEEEecC
Q psy13409 26 TGIGKCTANELAKRGARVIMACRS 49 (330)
Q Consensus 26 ~gIG~aia~~L~~~G~~Vil~~R~ 49 (330)
|..|.++|+.|...|+.|+++.+.
T Consensus 46 Gk~G~alA~~~~~~Ga~V~li~g~ 69 (290)
T d1p9oa_ 46 GRRGATSAEAFLAAGYGVLFLYRA 69 (290)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEEET
T ss_pred hHHHHHHHHHHHHcCCEEEEEecC
Confidence 679999999999999999998654
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.96 E-value=0.072 Score=43.80 Aligned_cols=84 Identities=14% Similarity=0.171 Sum_probs=61.4
Q ss_pred CCCEEE-EEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 15 DGKTAI-VTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 15 ~gk~aL-ITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
.|.+++ +|-|+||...++.+.+ . +.+|+++++++..++...+.++. .+.++.++..++++.+. +....
T Consensus 23 ~~~~~lD~t~G~Gghs~~il~~~-~-~~~vi~~D~d~~~l~~a~~~l~~------~~~r~~~~~~~f~~~~~---~~~~~ 91 (192)
T d1m6ya2 23 DEKIILDCTVGEGGHSRAILEHC-P-GCRIIGIDVDSEVLRIAEEKLKE------FSDRVSLFKVSYREADF---LLKTL 91 (192)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHC-T-TCEEEEEESCHHHHHHHHHHTGG------GTTTEEEEECCGGGHHH---HHHHT
T ss_pred CCCEEEEecCCCcHHHHHHHhcC-C-CCeEEEeechHHHHHHHHHhhcc------ccccccchhHHHhhHHH---HHHHc
Confidence 344444 6778888888888876 2 46899999999988877766654 26789999999977543 22221
Q ss_pred HhcCCCeeEEEEcCCCCC
Q psy13409 94 LDNESAIHLLINNAGVMM 111 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~ 111 (330)
..+.+|.++...|++.
T Consensus 92 --~~~~vdgIl~DlGvSs 107 (192)
T d1m6ya2 92 --GIEKVDGILMDLGVST 107 (192)
T ss_dssp --TCSCEEEEEEECSCCH
T ss_pred --CCCCcceeeeccchhH
Confidence 2368999999999864
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=93.84 E-value=0.44 Score=41.83 Aligned_cols=83 Identities=13% Similarity=0.039 Sum_probs=55.4
Q ss_pred CCCEEE-EEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 15 DGKTAI-VTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 15 ~gk~aL-ITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
++++|| +..++|+++.+. +..|++|+.++.+...++.+.+-+.... . ...++.++..|+. ++++..
T Consensus 132 ~~~rVLdlf~~tG~~sl~a----a~~GA~V~~VD~s~~al~~a~~N~~ln~--~-~~~~~~~i~~D~~------~~l~~~ 198 (309)
T d2igta1 132 RPLKVLNLFGYTGVASLVA----AAAGAEVTHVDASKKAIGWAKENQVLAG--L-EQAPIRWICEDAM------KFIQRE 198 (309)
T ss_dssp SCCEEEEETCTTCHHHHHH----HHTTCEEEEECSCHHHHHHHHHHHHHHT--C-TTSCEEEECSCHH------HHHHHH
T ss_pred CCCeEEEecCCCcHHHHHH----HhCCCeEEEEeChHHHHHHHHHhhhhhc--c-cCCcEEEEeCCHH------HhHHHH
Confidence 577888 455566666554 4579999999999988777666544321 0 2346888888873 344444
Q ss_pred HhcCCCeeEEEEcCCCC
Q psy13409 94 LDNESAIHLLINNAGVM 110 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~ 110 (330)
.....+.|+||...-..
T Consensus 199 ~~~~~~fD~IilDPP~f 215 (309)
T d2igta1 199 ERRGSTYDIILTDPPKF 215 (309)
T ss_dssp HHHTCCBSEEEECCCSE
T ss_pred hhcCCCCCEEEECCCcc
Confidence 44456789999987544
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=93.67 E-value=0.096 Score=43.19 Aligned_cols=39 Identities=21% Similarity=0.175 Sum_probs=35.4
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChh
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLE 51 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~ 51 (330)
.+|.||++.|.|- |.||+.+++.|...|++|+..++...
T Consensus 39 ~el~gk~vgIiG~-G~IG~~va~~l~~fg~~V~~~d~~~~ 77 (197)
T d1j4aa1 39 REVRDQVVGVVGT-GHIGQVFMQIMEGFGAKVITYDIFRN 77 (197)
T ss_dssp CCGGGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred ccccCCeEEEecc-cccchhHHHhHhhhcccccccCcccc
Confidence 4689999999998 99999999999999999999987654
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=93.65 E-value=0.17 Score=40.68 Aligned_cols=78 Identities=18% Similarity=0.149 Sum_probs=57.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
+.--+++|.|+ |-.|++-++.....|+.|.+.+.+.++++++...+.. .+.+ -.++.+.+++.+.+
T Consensus 30 v~pa~V~ViGa-GvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~---------~~~~---~~~~~~~l~~~~~~- 95 (168)
T d1pjca1 30 VKPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS---------RVEL---LYSNSAEIETAVAE- 95 (168)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG---------GSEE---EECCHHHHHHHHHT-
T ss_pred CCCcEEEEECC-ChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc---------ccee---ehhhhhhHHHhhcc-
Confidence 45789999999 8899999999999999999999999988776555432 2222 23455555554442
Q ss_pred HhcCCCeeEEEEcCCCCC
Q psy13409 94 LDNESAIHLLINNAGVMM 111 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~ 111 (330)
-|++|..+=+..
T Consensus 96 ------aDivI~aalipG 107 (168)
T d1pjca1 96 ------ADLLIGAVLVPG 107 (168)
T ss_dssp ------CSEEEECCCCTT
T ss_pred ------CcEEEEeeecCC
Confidence 499999987654
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.62 E-value=0.021 Score=53.00 Aligned_cols=81 Identities=21% Similarity=0.258 Sum_probs=54.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecCh-------------------hHHHHHHHHHHHhhcccCCCCeE
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSL-------------------EKAETAADDIRTSLKDVKDAGEV 73 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~-------------------~~l~~~~~~l~~~~~~~~~~~~v 73 (330)
|++.+|||.|+ ||||.++++.|+..|. ++.+++.+. .+.+.+.+.+++.. +..++
T Consensus 35 l~~~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~n----p~v~i 109 (426)
T d1yovb1 35 LDTCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRV----PNCNV 109 (426)
T ss_dssp HHHCCEEEECS-STTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHS----TTCCC
T ss_pred HhcCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhC----CCCce
Confidence 56789999999 8899999999999998 799988631 34444555555443 45566
Q ss_pred EEEEccCCCHHHHHHHHHHHHhcCCCeeEEEEcCC
Q psy13409 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAG 108 (330)
Q Consensus 74 ~~i~~Dls~~~si~~l~~~i~~~~g~iDvlInnAG 108 (330)
..+..++.+.. +.++ ...|++|++..
T Consensus 110 ~~~~~~i~~~~--~~~~-------~~~DlVi~~~D 135 (426)
T d1yovb1 110 VPHFNKIQDFN--DTFY-------RQFHIIVCGLD 135 (426)
T ss_dssp EEECSCGGGBC--HHHH-------TTCSEEEECCS
T ss_pred EeeeccccchH--HHHH-------HhcchheeccC
Confidence 66666665432 1222 23577776653
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=93.60 E-value=0.32 Score=39.74 Aligned_cols=77 Identities=21% Similarity=0.243 Sum_probs=54.9
Q ss_pred CCCCCCEEEEEcCCCc-hHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTG-IGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 12 ~~~~gk~aLITGas~g-IG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
.+++|+++|=.|++.| +|. .++..|+ .|++++.++..++.+.+-++. .+.+..++..|+...
T Consensus 43 ~dl~g~~vLDlg~GtG~l~i----~a~~~g~~~v~~vdi~~~~~~~a~~N~~~------~~~~~~~~~~d~~~~------ 106 (201)
T d1wy7a1 43 GDIEGKVVADLGAGTGVLSY----GALLLGAKEVICVEVDKEAVDVLIENLGE------FKGKFKVFIGDVSEF------ 106 (201)
T ss_dssp TSSTTCEEEEETCTTCHHHH----HHHHTTCSEEEEEESCHHHHHHHHHHTGG------GTTSEEEEESCGGGC------
T ss_pred CCCCCCEEEECcCcchHHHH----HHHHcCCCEEEEEcCcHHHHHHHHHHHHH------cCCCceEEECchhhh------
Confidence 4689999998887655 443 3456776 899999998877766554433 356778888887442
Q ss_pred HHHHHhcCCCeeEEEEcCCCCC
Q psy13409 90 AQEILDNESAIHLLINNAGVMM 111 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~ 111 (330)
.+++|++|.|+-...
T Consensus 107 -------~~~fD~Vi~nPP~~~ 121 (201)
T d1wy7a1 107 -------NSRVDIVIMNPPFGS 121 (201)
T ss_dssp -------CCCCSEEEECCCCSS
T ss_pred -------CCcCcEEEEcCcccc
Confidence 357899999987643
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=93.49 E-value=0.22 Score=39.14 Aligned_cols=89 Identities=16% Similarity=0.129 Sum_probs=54.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCC--EEEEEecChhHHHHHHHHHHHh--hcc----cCCCCeEEEEEccCCCHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGA--RVIMACRSLEKAETAADDIRTS--LKD----VKDAGEVVIRQLDLSSLKSVRK 88 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~~~l~~~~~~l~~~--~~~----~~~~~~v~~i~~Dls~~~si~~ 88 (330)
|+++|.|. |-||..+|+.|.+.|+ +|+..+++.+.++...+.-... ... ......+.++. +..+++..
T Consensus 2 k~I~IIG~-G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila---~p~~~~~~ 77 (171)
T d2g5ca2 2 QNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLS---SPVRTFRE 77 (171)
T ss_dssp CEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEEC---SCHHHHHH
T ss_pred CEEEEEcc-CHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhcccccccccc---CCchhhhh
Confidence 46889986 9999999999999996 7888999988766554331000 000 00122333322 23456777
Q ss_pred HHHHHHhcCCCeeEEEEcCCC
Q psy13409 89 CAQEILDNESAIHLLINNAGV 109 (330)
Q Consensus 89 l~~~i~~~~g~iDvlInnAG~ 109 (330)
+++++.+....=.+++..++.
T Consensus 78 vl~~l~~~~~~~~ii~d~~s~ 98 (171)
T d2g5ca2 78 IAKKLSYILSEDATVTDQGSV 98 (171)
T ss_dssp HHHHHHHHSCTTCEEEECCSC
T ss_pred hhhhhhccccccccccccccc
Confidence 777776655444556555553
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=93.16 E-value=0.075 Score=41.52 Aligned_cols=41 Identities=27% Similarity=0.400 Sum_probs=34.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHCC-CEEEEEecChhHHHHHHHH
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRG-ARVIMACRSLEKAETAADD 59 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G-~~Vil~~R~~~~l~~~~~~ 59 (330)
++.+.|+ |-+|.++++.|++.| ++|++.+|++++++++.++
T Consensus 2 kI~fIG~-G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~ 43 (152)
T d1yqga2 2 NVYFLGG-GNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKE 43 (152)
T ss_dssp EEEEECC-SHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHH
T ss_pred EEEEEcC-cHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhh
Confidence 5778877 999999999999888 7999999999887666543
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=93.09 E-value=0.11 Score=43.98 Aligned_cols=48 Identities=19% Similarity=0.335 Sum_probs=41.7
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADD 59 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~ 59 (330)
..+|+||+++|-|- |.+|.++++.|.+.|++|++++.+...+.....+
T Consensus 34 ~~~l~g~~v~IqG~-GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~ 81 (230)
T d1leha1 34 SDSLEGLAVSVQGL-GNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAE 81 (230)
T ss_dssp SCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH
T ss_pred CCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHh
Confidence 35699999999998 8999999999999999999999998776655543
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=93.03 E-value=0.064 Score=40.53 Aligned_cols=36 Identities=17% Similarity=0.153 Sum_probs=32.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChh
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLE 51 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~ 51 (330)
++++++|.|| |.+|.++|..|.+.|.+|.++.+.+.
T Consensus 29 ~~~~vvIIGg-G~iG~E~A~~l~~~g~~Vtli~~~~~ 64 (121)
T d1d7ya2 29 PQSRLLIVGG-GVIGLELAATARTAGVHVSLVETQPR 64 (121)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred cCCeEEEECc-chhHHHHHHHhhcccceEEEEeeccc
Confidence 4689999998 99999999999999999999998754
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=92.95 E-value=0.074 Score=43.83 Aligned_cols=35 Identities=37% Similarity=0.451 Sum_probs=31.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL 50 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~ 50 (330)
+.|+|+|.|| |-.|.++|..|+++|++|.++.|..
T Consensus 5 ~~~kVvVIGa-GiaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 5 SQKRVVVLGS-GVIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp CSCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCcEEEECc-cHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 5678999999 8999999999999999999999863
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=92.87 E-value=0.082 Score=39.93 Aligned_cols=36 Identities=28% Similarity=0.236 Sum_probs=32.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL 50 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~ 50 (330)
-++|+++|.|| |.+|.++|..|++.|.+|.++.+..
T Consensus 28 ~~~k~vvViGg-G~iG~E~A~~l~~~g~~Vtlie~~~ 63 (123)
T d1nhpa2 28 PEVNNVVVIGS-GYIGIEAAEAFAKAGKKVTVIDILD 63 (123)
T ss_dssp TTCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred cCCCEEEEECC-hHHHHHHHHHhhccceEEEEEEecC
Confidence 35789999988 9999999999999999999998864
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=92.87 E-value=0.24 Score=36.74 Aligned_cols=33 Identities=18% Similarity=0.079 Sum_probs=30.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSL 50 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~ 50 (330)
|+++|.|| |-+|.++|..|.+.|.+|.++.|.+
T Consensus 22 ~~vvIiGg-G~ig~E~A~~l~~~G~~Vtlve~~~ 54 (116)
T d1gesa2 22 ERVAVVGA-GYIGVELGGVINGLGAKTHLFEMFD 54 (116)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CEEEEECC-ChhhHHHHHHhhccccEEEEEeecc
Confidence 67889998 9999999999999999999999864
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=92.80 E-value=0.29 Score=37.23 Aligned_cols=75 Identities=12% Similarity=0.193 Sum_probs=55.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEE-ecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMA-CRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~-~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
+++.|.|++|-.|+++++.+.+.|+.++.. +++... .. ...+ +..|+|.++.....++.+.+
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~~-------------~~-~~~D---VvIDFS~p~~~~~~l~~~~~ 63 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGVE-------------EL-DSPD---VVIDFSSPEALPKTVDLCKK 63 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEEE-------------EC-SCCS---EEEECSCGGGHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcHH-------------Hh-ccCC---EEEEecCHHHHHHHHHHHHh
Confidence 368999999999999999999999986654 444321 00 1223 34699999999999998877
Q ss_pred cCCCeeEEEEcCCCC
Q psy13409 96 NESAIHLLINNAGVM 110 (330)
Q Consensus 96 ~~g~iDvlInnAG~~ 110 (330)
. .+.+++-..|..
T Consensus 64 ~--~~p~ViGTTG~~ 76 (128)
T d1vm6a3 64 Y--RAGLVLGTTALK 76 (128)
T ss_dssp H--TCEEEECCCSCC
T ss_pred c--CCCEEEEcCCCC
Confidence 6 456788777754
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=92.79 E-value=0.41 Score=41.99 Aligned_cols=83 Identities=14% Similarity=0.136 Sum_probs=57.0
Q ss_pred CCCCEEEEEc-CCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 14 LDGKTAIVTG-SNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 14 ~~gk~aLITG-as~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
.+|++||=.+ ++|+++.++ +..+.+|+.++.++..++.+.+.++.. .-.++.++..|..+ +.+.
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~----a~g~~~V~~vD~s~~al~~a~~n~~~n-----gl~~~~~i~~d~~~------~~~~ 208 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHL----ALGFREVVAVDSSAEALRRAEENARLN-----GLGNVRVLEANAFD------LLRR 208 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHH----HHHEEEEEEEESCHHHHHHHHHHHHHT-----TCTTEEEEESCHHH------HHHH
T ss_pred hCCCeeeccCCCCcHHHHHH----HhcCCcEEeecchHHHHHHHHHHHHHc-----CCCCcceeeccHHH------Hhhh
Confidence 5789999666 456665544 345679999999999888777666543 22468888888744 3334
Q ss_pred HHhcCCCeeEEEEcCCCCC
Q psy13409 93 ILDNESAIHLLINNAGVMM 111 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~ 111 (330)
......+.|++|.++....
T Consensus 209 ~~~~~~~fD~Vi~DpP~~~ 227 (318)
T d1wxxa2 209 LEKEGERFDLVVLDPPAFA 227 (318)
T ss_dssp HHHTTCCEEEEEECCCCSC
T ss_pred hHhhhcCCCEEEEcCCccc
Confidence 4444568999999986543
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.62 E-value=0.21 Score=37.55 Aligned_cols=33 Identities=18% Similarity=0.209 Sum_probs=30.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSL 50 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~ 50 (330)
|+++|.|| |-||.++|..|.+.|.+|.++.|.+
T Consensus 23 k~vvIvGg-G~iG~E~A~~l~~~G~~Vtlv~~~~ 55 (125)
T d3grsa2 23 GRSVIVGA-GYIAVEMAGILSALGSKTSLMIRHD 55 (125)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CEEEEEcC-CccHHHHHHHHhcCCcEEEEEeecc
Confidence 78999999 8999999999999999999999964
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.59 E-value=0.2 Score=37.62 Aligned_cols=34 Identities=18% Similarity=0.160 Sum_probs=31.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL 50 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~ 50 (330)
-|+++|.|| |-||.++|..|.+.|.+|.++.+.+
T Consensus 23 p~~~vIiG~-G~ig~E~A~~l~~lG~~Vtii~~~~ 56 (122)
T d1v59a2 23 PKRLTIIGG-GIIGLEMGSVYSRLGSKVTVVEFQP 56 (122)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCeEEEECC-CchHHHHHHHHHhhCcceeEEEecc
Confidence 378999999 9999999999999999999998865
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=92.57 E-value=0.25 Score=39.54 Aligned_cols=34 Identities=15% Similarity=0.259 Sum_probs=30.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChh
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLE 51 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~ 51 (330)
+++.|.|+ |..|.++|..|++.|++|.+.+|..+
T Consensus 1 MkI~ViGa-G~~GtalA~~la~~g~~V~l~~r~~~ 34 (180)
T d1txga2 1 MIVSILGA-GAMGSALSVPLVDNGNEVRIWGTEFD 34 (180)
T ss_dssp CEEEEESC-CHHHHHHHHHHHHHCCEEEEECCGGG
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCEEEEEEeccc
Confidence 46889998 99999999999999999999998644
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=92.50 E-value=0.096 Score=41.02 Aligned_cols=42 Identities=17% Similarity=0.285 Sum_probs=35.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHH
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDI 60 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l 60 (330)
++.|.|+ |-+|.++++.|.+.|++|++.+|+.++.+++.+++
T Consensus 2 kIg~IG~-G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~ 43 (152)
T d2ahra2 2 KIGIIGV-GKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL 43 (152)
T ss_dssp EEEEECC-SHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH
T ss_pred EEEEEec-cHHHHHHHHHHHhCCCeEEEEcChHHhHHhhcccc
Confidence 4667766 99999999999999999999999988877665543
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.47 E-value=0.58 Score=40.49 Aligned_cols=76 Identities=22% Similarity=0.222 Sum_probs=53.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
++|++||-.|++.|+ ++..+++.|+ +|++++.++.. ....+...+. +...++.++..|+.+...
T Consensus 34 ~~~~~VLDiGcG~G~---lsl~aa~~Ga~~V~aid~s~~~-~~a~~~~~~~----~~~~~i~~~~~~~~~l~~------- 98 (311)
T d2fyta1 34 FKDKVVLDVGCGTGI---LSMFAAKAGAKKVLGVDQSEIL-YQAMDIIRLN----KLEDTITLIKGKIEEVHL------- 98 (311)
T ss_dssp TTTCEEEEETCTTSH---HHHHHHHTTCSEEEEEESSTHH-HHHHHHHHHT----TCTTTEEEEESCTTTSCC-------
T ss_pred CCcCEEEEECCCCCH---HHHHHHHcCCCEEEEEeCHHHH-HHHHHHHHHh----CCCccceEEEeeHHHhcC-------
Confidence 689999999998775 5666777887 79999988753 3333333332 246789999999877431
Q ss_pred HHhcCCCeeEEEEcC
Q psy13409 93 ILDNESAIHLLINNA 107 (330)
Q Consensus 93 i~~~~g~iDvlInnA 107 (330)
...+.|+++...
T Consensus 99 ---~~~~~D~Ivse~ 110 (311)
T d2fyta1 99 ---PVEKVDVIISEW 110 (311)
T ss_dssp ---SCSCEEEEEECC
T ss_pred ---ccccceEEEEee
Confidence 224789998754
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=92.47 E-value=0.35 Score=39.61 Aligned_cols=73 Identities=25% Similarity=0.237 Sum_probs=51.3
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.++.||+||=.|+++|+ ++..++..|+ +|+.++.++..++.+.+. -.++.++.+|+.+.
T Consensus 45 ~dl~Gk~VLDlGcGtG~---l~i~a~~~ga~~V~~vDid~~a~~~ar~N----------~~~~~~~~~D~~~l------- 104 (197)
T d1ne2a_ 45 GNIGGRSVIDAGTGNGI---LACGSYLLGAESVTAFDIDPDAIETAKRN----------CGGVNFMVADVSEI------- 104 (197)
T ss_dssp TSSBTSEEEEETCTTCH---HHHHHHHTTBSEEEEEESCHHHHHHHHHH----------CTTSEEEECCGGGC-------
T ss_pred CCCCCCEEEEeCCCCcH---HHHHHHHcCCCcccccccCHHHHHHHHHc----------cccccEEEEehhhc-------
Confidence 46899999999987773 2334666776 699999998766543321 23567888888542
Q ss_pred HHHHhcCCCeeEEEEcCCCC
Q psy13409 91 QEILDNESAIHLLINNAGVM 110 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~ 110 (330)
.++.|++|.|.-+.
T Consensus 105 ------~~~fD~Vi~NPPfg 118 (197)
T d1ne2a_ 105 ------SGKYDTWIMNPPFG 118 (197)
T ss_dssp ------CCCEEEEEECCCC-
T ss_pred ------CCcceEEEeCcccc
Confidence 36799999997653
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=92.45 E-value=0.26 Score=36.74 Aligned_cols=34 Identities=21% Similarity=0.142 Sum_probs=31.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL 50 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~ 50 (330)
-|+++|.|| |-||.++|..|.+.|.+|.++.|..
T Consensus 22 p~~v~IiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~ 55 (117)
T d1onfa2 22 SKKIGIVGS-GYIAVELINVIKRLGIDSYIFARGN 55 (117)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred CCEEEEECC-chHHHHHHHHHHhccccceeeehhc
Confidence 478999998 9999999999999999999999864
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.45 E-value=0.12 Score=40.83 Aligned_cols=39 Identities=18% Similarity=0.089 Sum_probs=33.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETA 56 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~ 56 (330)
++|.|.|- |-+|.++|++|+++|++|.+.+|+.++.+..
T Consensus 2 ~kIg~IGl-G~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~ 40 (162)
T d3cuma2 2 KQIAFIGL-GHMGAPMATNLLKAGYLLNVFDLVQSAVDGL 40 (162)
T ss_dssp CEEEEECC-STTHHHHHHHHHHTTCEEEEECSSHHHHHHH
T ss_pred CEEEEEEE-HHHHHHHHHHHHHCCCeEEEEECchhhhhhh
Confidence 35677765 9999999999999999999999998776544
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.39 E-value=0.083 Score=39.30 Aligned_cols=35 Identities=26% Similarity=0.242 Sum_probs=31.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChh
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLE 51 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~ 51 (330)
-|+++|.|| |-||.++|..|.+.|.+|.++.|.+.
T Consensus 22 p~~v~IiGg-G~ig~E~A~~l~~~G~~Vtlve~~~~ 56 (117)
T d1ebda2 22 PKSLVVIGG-GYIGIELGTAYANFGTKVTILEGAGE 56 (117)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCeEEEECC-CccceeeeeeecccccEEEEEEecce
Confidence 478999999 99999999999999999999988753
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=92.22 E-value=0.078 Score=43.33 Aligned_cols=40 Identities=25% Similarity=0.243 Sum_probs=34.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAA 57 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~ 57 (330)
+++.|.|+ |..|.++|..|++.|++|.+.+|+++..+.+.
T Consensus 8 ~KI~ViGa-G~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~ 47 (189)
T d1n1ea2 8 NKAVVFGS-GAFGTALAMVLSKKCREVCVWHMNEEEVRLVN 47 (189)
T ss_dssp EEEEEECC-SHHHHHHHHHHHTTEEEEEEECSCHHHHHHHH
T ss_pred ceEEEECC-CHHHHHHHHHHHHcCCeEEEEEecHHHHHHHh
Confidence 46889998 78999999999999999999999987655443
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=92.20 E-value=0.98 Score=35.74 Aligned_cols=123 Identities=10% Similarity=0.048 Sum_probs=64.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHC-----CCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKR-----GARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~-----G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
..++.|.||++.-...++..++.+ +.+|++.+.++++++.....+...........++... . |. +..+
T Consensus 3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---d~---~eal 75 (167)
T d1u8xx1 3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAAT-T---DP---EEAF 75 (167)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEE-S---CH---HHHH
T ss_pred CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEec-C---Ch---hhcc
Confidence 446777787553222233444432 2379999999999886666655543332233344332 1 21 1121
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHH----------------HHHHHHHHHHHHHHHhhhCCCeEEEE
Q psy13409 91 QEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATN----------------HLGHYLFTLLLLPRIIKSAPARIINL 154 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN----------------~~g~~~l~~~~l~~l~~~~~g~IV~i 154 (330)
..-|++|+.+|....+ ..+-++.+..| ..-.+-+++.+.+.+.+.....++.+
T Consensus 76 -------~~AD~Vvitag~~~~~----g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~P~A~li~ 144 (167)
T d1u8xx1 76 -------TDVDFVMAHIRVGKYA----MRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLN 144 (167)
T ss_dssp -------SSCSEEEECCCTTHHH----HHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred -------CCCCEEEECCCcCCCC----ceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhCCCeEEEE
Confidence 2359999999976432 11112222222 12234456677777777665455544
Q ss_pred cC
Q psy13409 155 SS 156 (330)
Q Consensus 155 SS 156 (330)
-|
T Consensus 145 ~T 146 (167)
T d1u8xx1 145 YS 146 (167)
T ss_dssp CC
T ss_pred eC
Confidence 44
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=92.03 E-value=0.16 Score=40.57 Aligned_cols=41 Identities=27% Similarity=0.344 Sum_probs=37.7
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEK 52 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~ 52 (330)
+..+.||+++|.|- |.+|+.+|..|...|++|+++..++-+
T Consensus 18 ~~~laGk~vvV~GY-G~vGrG~A~~~rg~Ga~V~V~E~DPi~ 58 (163)
T d1v8ba1 18 DFLISGKIVVICGY-GDVGKGCASSMKGLGARVYITEIDPIC 58 (163)
T ss_dssp CCCCTTSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSCHHH
T ss_pred CceecCCEEEEecc-cccchhHHHHHHhCCCEEEEEecCchh
Confidence 45689999999999 899999999999999999999999854
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=92.00 E-value=0.41 Score=35.23 Aligned_cols=36 Identities=22% Similarity=0.272 Sum_probs=32.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL 50 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~ 50 (330)
..+|.++|.|| |-||..+|..|.+.|.+|.++.|.+
T Consensus 20 ~~~~~vvVvGg-G~ig~E~A~~l~~~g~~vt~i~~~~ 55 (121)
T d1mo9a2 20 EPGSTVVVVGG-SKTAVEYGCFFNATGRRTVMLVRTE 55 (121)
T ss_dssp CCCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhcchhheEeeccc
Confidence 45899999998 9999999999999999999999864
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=91.96 E-value=0.094 Score=41.90 Aligned_cols=41 Identities=24% Similarity=0.267 Sum_probs=34.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHH
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADD 59 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~ 59 (330)
++-|.|- |-+|.+++++|+++|++|.+.+|++++.+++.+.
T Consensus 3 kIGvIGl-G~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~ 43 (178)
T d1pgja2 3 DVGVVGL-GVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKA 43 (178)
T ss_dssp SEEEECC-SHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH
T ss_pred EEEEEee-hHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHc
Confidence 3556665 9999999999999999999999999887776554
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=91.94 E-value=0.071 Score=44.27 Aligned_cols=34 Identities=24% Similarity=0.169 Sum_probs=30.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL 50 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~ 50 (330)
+|+|+|.|| |--|+..|.+|++.|++|+++.++.
T Consensus 1 ~KkV~IIGa-G~aGL~aA~~La~~G~~V~vlE~~~ 34 (373)
T d1seza1 1 AKRVAVIGA-GVSGLAAAYKLKIHGLNVTVFEAEG 34 (373)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 689999998 7789999999999999999998764
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=91.88 E-value=0.084 Score=39.73 Aligned_cols=34 Identities=32% Similarity=0.341 Sum_probs=31.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL 50 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~ 50 (330)
++.++|.|| |.+|.++|..|.+.|.+|.++.|.+
T Consensus 32 ~~~vvIiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~ 65 (122)
T d1xhca2 32 SGEAIIIGG-GFIGLELAGNLAEAGYHVKLIHRGA 65 (122)
T ss_dssp HSEEEEEEC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCcEEEECC-cHHHHHHHHHhhcccceEEEEeccc
Confidence 478999998 9999999999999999999998864
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.87 E-value=0.4 Score=39.75 Aligned_cols=80 Identities=19% Similarity=0.163 Sum_probs=61.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.|.+||..|+++|--.++..+|. |.+|+.+.++++-.+...+.+.+. .-.++.++..|..+-.
T Consensus 78 ~g~~VLeIGsGsGY~taila~l~--g~~V~~ie~~~~l~~~a~~~l~~~-----g~~nv~~~~gd~~~g~---------- 140 (215)
T d1jg1a_ 78 PGMNILEVGTGSGWNAALISEIV--KTDVYTIERIPELVEFAKRNLERA-----GVKNVHVILGDGSKGF---------- 140 (215)
T ss_dssp TTCCEEEECCTTSHHHHHHHHHH--CSCEEEEESCHHHHHHHHHHHHHT-----TCCSEEEEESCGGGCC----------
T ss_pred ccceEEEecCCCChhHHHHHHhh--CceeEEEeccHHHHHHHHHHHHHc-----CCceeEEEECccccCC----------
Confidence 58899999999998888888877 567999999988777777666654 3578999999986411
Q ss_pred hcCCCeeEEEEcCCCCC
Q psy13409 95 DNESAIHLLINNAGVMM 111 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~~ 111 (330)
...++.|.++.+++...
T Consensus 141 ~~~~pfD~Iiv~~a~~~ 157 (215)
T d1jg1a_ 141 PPKAPYDVIIVTAGAPK 157 (215)
T ss_dssp GGGCCEEEEEECSBBSS
T ss_pred cccCcceeEEeeccccc
Confidence 22367899998888753
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=91.87 E-value=0.7 Score=37.98 Aligned_cols=76 Identities=16% Similarity=0.086 Sum_probs=56.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
-+++++|=.|++.| .++..|+++|++|+.++.++.-++.+.+.... .+.++.++..|+.+.+
T Consensus 40 ~~~~~iLDiGcGtG---~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~------~~~~i~~~~~d~~~l~--------- 101 (251)
T d1wzna1 40 REVRRVLDLACGTG---IPTLELAERGYEVVGLDLHEEMLRVARRKAKE------RNLKIEFLQGDVLEIA--------- 101 (251)
T ss_dssp SCCCEEEEETCTTC---HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH------TTCCCEEEESCGGGCC---------
T ss_pred CCCCEEEEeCCCCC---ccchhhcccceEEEEEeecccccccccccccc------ccccchheehhhhhcc---------
Confidence 35678999998776 34567888999999999999877776666554 2557889999986632
Q ss_pred HhcCCCeeEEEEcCCC
Q psy13409 94 LDNESAIHLLINNAGV 109 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~ 109 (330)
.-+..|++++.-+.
T Consensus 102 --~~~~fD~I~~~~~~ 115 (251)
T d1wzna1 102 --FKNEFDAVTMFFST 115 (251)
T ss_dssp --CCSCEEEEEECSSG
T ss_pred --cccccchHhhhhhh
Confidence 12468988876443
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.82 E-value=0.1 Score=42.06 Aligned_cols=38 Identities=34% Similarity=0.354 Sum_probs=35.3
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecC
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRS 49 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~ 49 (330)
.+++||.++|.|-|.=+|+-++..|+++|++|..++.+
T Consensus 25 ~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~ 62 (171)
T d1edza1 25 NRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN 62 (171)
T ss_dssp CTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred CCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccc
Confidence 47999999999999999999999999999999988765
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=91.75 E-value=3.7 Score=35.57 Aligned_cols=84 Identities=11% Similarity=0.081 Sum_probs=56.5
Q ss_pred CCCCEEEEE-cCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 14 LDGKTAIVT-GSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 14 ~~gk~aLIT-Gas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
.+|++||=. .++|+++.+ ++..|+ .|+.++.+...++...+.++... + ...++.++..|+. ..++
T Consensus 143 ~~g~~VLdlf~~~G~~sl~----aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~--l-~~~~~~~i~~d~~------~~l~ 209 (317)
T d2b78a2 143 AAGKTVLNLFSYTAAFSVA----AAMGGAMATTSVDLAKRSRALSLAHFEANH--L-DMANHQLVVMDVF------DYFK 209 (317)
T ss_dssp TBTCEEEEETCTTTHHHHH----HHHTTBSEEEEEESCTTHHHHHHHHHHHTT--C-CCTTEEEEESCHH------HHHH
T ss_pred hCCCceeecCCCCcHHHHH----HHhCCCceEEEecCCHHHHHHHHHHHHHhc--c-cCcceEEEEccHH------HHHH
Confidence 368888854 456776654 344677 79999999988777666654321 1 2357888888873 3444
Q ss_pred HHHhcCCCeeEEEEcCCCC
Q psy13409 92 EILDNESAIHLLINNAGVM 110 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~ 110 (330)
...+...+.|++|..+-..
T Consensus 210 ~~~~~~~~fD~Ii~DPP~f 228 (317)
T d2b78a2 210 YARRHHLTYDIIIIDPPSF 228 (317)
T ss_dssp HHHHTTCCEEEEEECCCCC
T ss_pred HHHhhcCCCCEEEEcChhh
Confidence 4555556899999987544
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=91.70 E-value=0.53 Score=38.65 Aligned_cols=81 Identities=16% Similarity=0.114 Sum_probs=58.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.|.+||-.|+++|--.++..++...+..|+.++.+++.++...+.+... .-.++.++..|..+..
T Consensus 75 ~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~-----~~~n~~~~~~d~~~~~---------- 139 (213)
T d1dl5a1 75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERL-----GIENVIFVCGDGYYGV---------- 139 (213)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHT-----TCCSEEEEESCGGGCC----------
T ss_pred ccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhh-----cccccccccCchHHcc----------
Confidence 5889999998887766666666656679999999999888887777654 3457777777764311
Q ss_pred hcCCCeeEEEEcCCCC
Q psy13409 95 DNESAIHLLINNAGVM 110 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~ 110 (330)
...+..|+++.+++..
T Consensus 140 ~~~~~fD~I~~~~~~~ 155 (213)
T d1dl5a1 140 PEFSPYDVIFVTVGVD 155 (213)
T ss_dssp GGGCCEEEEEECSBBS
T ss_pred ccccchhhhhhhccHH
Confidence 1224689999888754
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=91.57 E-value=0.51 Score=34.95 Aligned_cols=35 Identities=23% Similarity=0.044 Sum_probs=31.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL 50 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~ 50 (330)
.-++++|.|| |-||..+|..|++.|.+|.++.+..
T Consensus 21 ~p~~i~IiG~-G~ig~E~A~~l~~~G~~Vtiv~~~~ 55 (119)
T d3lada2 21 VPGKLGVIGA-GVIGLELGSVWARLGAEVTVLEAMD 55 (119)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCCeEEEECC-ChHHHHHHHHHHHcCCceEEEEeec
Confidence 3488999999 9999999999999999999998764
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=91.55 E-value=0.32 Score=39.32 Aligned_cols=39 Identities=18% Similarity=0.024 Sum_probs=35.1
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL 50 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~ 50 (330)
..++.++++.|.|. |.||..+++.+...|.+|+..++..
T Consensus 39 ~~~l~~~~vgiiG~-G~IG~~va~~l~~fg~~v~~~d~~~ 77 (188)
T d1sc6a1 39 SFEARGKKLGIIGY-GHIGTQLGILAESLGMYVYFYDIEN 77 (188)
T ss_dssp CCCSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred cccccceEEEEeec-ccchhhhhhhcccccceEeeccccc
Confidence 34689999999987 9999999999999999999998864
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=91.49 E-value=0.17 Score=40.95 Aligned_cols=38 Identities=29% Similarity=0.301 Sum_probs=34.8
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL 50 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~ 50 (330)
..+.||++.|.|. |.||..+++.+...|++|+..+|+.
T Consensus 38 ~~l~gk~vgIiG~-G~IG~~va~~l~~~g~~v~~~d~~~ 75 (181)
T d1qp8a1 38 PLIQGEKVAVLGL-GEIGTRVGKILAALGAQVRGFSRTP 75 (181)
T ss_dssp CCCTTCEEEEESC-STHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CcccCceEEEecc-ccccccceeeeeccccccccccccc
Confidence 3589999999999 7799999999999999999998875
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=91.27 E-value=0.37 Score=37.45 Aligned_cols=90 Identities=16% Similarity=0.153 Sum_probs=56.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHhcC
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNE 97 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~~~ 97 (330)
++-+.|- |-+|..++++|++.|+.+ +..|+.++..+..+...........-.....+...+.+.+.+......+.+..
T Consensus 2 kIg~IGl-G~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~l~~~~ 79 (156)
T d2cvza2 2 KVAFIGL-GAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVAEALYPYL 79 (156)
T ss_dssp CEEEECC-STTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHHHHHTTTC
T ss_pred eEEEEeH-HHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcCCcccccccccceeEEEecccchhhhhhhhccccccc
Confidence 3566776 999999999999888755 57788777666555432211111111122233345556677777777777766
Q ss_pred CCeeEEEEcCCC
Q psy13409 98 SAIHLLINNAGV 109 (330)
Q Consensus 98 g~iDvlInnAG~ 109 (330)
.+-.++|.+...
T Consensus 80 ~~~~~iid~sT~ 91 (156)
T d2cvza2 80 REGTYWVDATSG 91 (156)
T ss_dssp CTTEEEEECSCC
T ss_pred cccccccccccC
Confidence 666777777654
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.25 E-value=0.081 Score=42.18 Aligned_cols=36 Identities=14% Similarity=0.057 Sum_probs=31.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCE-EEEEecChh
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGAR-VIMACRSLE 51 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~-Vil~~R~~~ 51 (330)
.+|+|+|.|| |-.|...|..|+++|++ |+++.|+..
T Consensus 3 ~~~kVaIIGa-GpaGl~aA~~l~~~G~~~V~v~E~~~~ 39 (196)
T d1gtea4 3 YSAKIALLGA-GPASISCASFLARLGYSDITIFEKQEY 39 (196)
T ss_dssp GGCCEEEECC-SHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred CCCEEEEECC-hHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence 3689999999 89999999999999984 989888753
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=91.22 E-value=0.3 Score=40.62 Aligned_cols=77 Identities=16% Similarity=0.073 Sum_probs=58.1
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
.+.++++|=.|++.|. ++..|++.|.+|+.++.++.-++.+.+.... .+.++.++..|+.+.+
T Consensus 35 ~~~~~~vLDiGCG~G~---~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~------~~~~v~~~~~d~~~~~-------- 97 (246)
T d1y8ca_ 35 NLVFDDYLDLACGTGN---LTENLCPKFKNTWAVDLSQEMLSEAENKFRS------QGLKPRLACQDISNLN-------- 97 (246)
T ss_dssp TCCTTEEEEETCTTST---THHHHGGGSSEEEEECSCHHHHHHHHHHHHH------TTCCCEEECCCGGGCC--------
T ss_pred CCCCCeEEEEeCcCCH---HHHHHHHhCCccEeeccchhhhhhccccccc------cCccceeeccchhhhc--------
Confidence 4678899999988774 6778888999999999999887776665544 3557888988886532
Q ss_pred HHhcCCCeeEEEEcCCC
Q psy13409 93 ILDNESAIHLLINNAGV 109 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~ 109 (330)
..+..|++++..+.
T Consensus 98 ---~~~~fD~i~~~~~~ 111 (246)
T d1y8ca_ 98 ---INRKFDLITCCLDS 111 (246)
T ss_dssp ---CSCCEEEEEECTTG
T ss_pred ---ccccccccceeeee
Confidence 23478999876543
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.16 E-value=0.17 Score=40.98 Aligned_cols=41 Identities=32% Similarity=0.301 Sum_probs=36.4
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhH
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEK 52 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~ 52 (330)
...+.||++.|.|. |.||+++++.+...|.+|+..++....
T Consensus 39 ~~~l~~k~vgiiG~-G~IG~~va~~~~~fg~~v~~~d~~~~~ 79 (184)
T d1ygya1 39 GTEIFGKTVGVVGL-GRIGQLVAQRIAAFGAYVVAYDPYVSP 79 (184)
T ss_dssp BCCCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTSCH
T ss_pred cccccceeeeeccc-cchhHHHHHHhhhccceEEeecCCCCh
Confidence 34689999999997 999999999999999999999987653
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=91.10 E-value=0.75 Score=36.78 Aligned_cols=82 Identities=13% Similarity=0.314 Sum_probs=57.4
Q ss_pred CCCCCEEE-EEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 13 RLDGKTAI-VTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 13 ~~~gk~aL-ITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
.++|+++| +..|+|.+|.+ .+++|+ .|++++.+....+-+.+-++... ...++.++..|+. +++
T Consensus 39 ~~~~~~vLDlfaGsG~~g~e----a~srGa~~v~~ve~~~~a~~~~~~N~~~~~----~~~~~~i~~~D~~------~~l 104 (182)
T d2fhpa1 39 YFDGGMALDLYSGSGGLAIE----AVSRGMDKSICIEKNFAALKVIKENIAITK----EPEKFEVRKMDAN------RAL 104 (182)
T ss_dssp CCSSCEEEETTCTTCHHHHH----HHHTTCSEEEEEESCHHHHHHHHHHHHHHT----CGGGEEEEESCHH------HHH
T ss_pred hcCCCEEEEcccccccccce----eeecchhHHHHHHHHHHHHHHHHHHhhhhh----cccccccccccch------hhh
Confidence 46889888 55667778876 455888 69999999887776666554431 3457888888873 345
Q ss_pred HHHHhcCCCeeEEEEcCC
Q psy13409 91 QEILDNESAIHLLINNAG 108 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG 108 (330)
++..+.....|+++..+-
T Consensus 105 ~~~~~~~~~fDlIflDPP 122 (182)
T d2fhpa1 105 EQFYEEKLQFDLVLLDPP 122 (182)
T ss_dssp HHHHHTTCCEEEEEECCC
T ss_pred hhhcccCCCcceEEechh
Confidence 555555567899987764
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=91.03 E-value=0.44 Score=34.97 Aligned_cols=34 Identities=24% Similarity=0.162 Sum_probs=30.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL 50 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~ 50 (330)
.++++|.|| |-+|.++|..|.+.|.+|.++.+.+
T Consensus 21 p~~vvIiGg-G~~G~E~A~~l~~~g~~Vtlve~~~ 54 (115)
T d1lvla2 21 PQHLVVVGG-GYIGLELGIAYRKLGAQVSVVEARE 54 (115)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCeEEEECC-CHHHHHHHHHHhhcccceEEEeeec
Confidence 478999988 9999999999999999999998864
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.99 E-value=0.46 Score=36.46 Aligned_cols=77 Identities=16% Similarity=0.192 Sum_probs=53.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHC-CCEEEEE-ecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 18 TAIVTGSNTGIGKCTANELAKR-GARVIMA-CRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~-G~~Vil~-~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
++.|.|++|-+|+++++.+.+. ++.++.. ++.. .+.. +.. .+.+ +..|+|.++.....++.+.+
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~-~~~~----~~~------~~~D---vvIDFS~p~~~~~~~~~~~~ 66 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD-PLSL----LTD------GNTE---VVIDFTHPDVVMGNLEFLID 66 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC-CTHH----HHT------TTCS---EEEECCCTTTHHHHHHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC-chhh----hcc------ccCC---EEEEcccHHHHHHHHHHHHh
Confidence 5889999999999999988765 5676553 4432 2211 111 1223 45799999999999988877
Q ss_pred cCCCeeEEEEcCCCC
Q psy13409 96 NESAIHLLINNAGVM 110 (330)
Q Consensus 96 ~~g~iDvlInnAG~~ 110 (330)
. .+.++|-..|..
T Consensus 67 ~--~~~~ViGTTG~~ 79 (135)
T d1yl7a1 67 N--GIHAVVGTTGFT 79 (135)
T ss_dssp T--TCEEEECCCCCC
T ss_pred c--CCCEEEeccccc
Confidence 6 466777777753
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.88 E-value=1.3 Score=38.24 Aligned_cols=78 Identities=23% Similarity=0.187 Sum_probs=52.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
.+|++||-.|++.|+ ++..+++.|+ +|++++.++. .....+.+... +...++.++..|+.+.+.
T Consensus 32 ~~~~~VLDiGcG~G~---ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n----~~~~~v~~~~~~~~~~~~------- 96 (316)
T d1oria_ 32 FKDKVVLDVGSGTGI---LCMFAAKAGARKVIGIECSSI-SDYAVKIVKAN----KLDHVVTIIKGKVEEVEL------- 96 (316)
T ss_dssp HTTCEEEEETCTTSH---HHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHT----TCTTTEEEEESCTTTCCC-------
T ss_pred CCcCEEEEEecCCcH---HHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHh----CCccccceEeccHHHccc-------
Confidence 479999999988775 4556777886 7999997754 33333333322 145679999999877431
Q ss_pred HHhcCCCeeEEEEcCCC
Q psy13409 93 ILDNESAIHLLINNAGV 109 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~ 109 (330)
....+|+++.....
T Consensus 97 ---~~~~~D~ivs~~~~ 110 (316)
T d1oria_ 97 ---PVEKVDIIISEWMG 110 (316)
T ss_dssp ---SSSCEEEEEECCCB
T ss_pred ---ccceeEEEeeeeee
Confidence 23578999876543
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.83 E-value=0.41 Score=39.80 Aligned_cols=86 Identities=17% Similarity=0.153 Sum_probs=62.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.|.+||-.|+++|--.++..++.....+|+.++++++-++.+.+.+++.........++.+...|.....
T Consensus 76 ~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~---------- 145 (224)
T d1i1na_ 76 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY---------- 145 (224)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC----------
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccccc----------
Confidence 5889999999999888888888887889999999998888777766543211112356777777864311
Q ss_pred hcCCCeeEEEEcCCCC
Q psy13409 95 DNESAIHLLINNAGVM 110 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~ 110 (330)
...+..|+++.+++..
T Consensus 146 ~~~~~fD~I~~~~~~~ 161 (224)
T d1i1na_ 146 AEEAPYDAIHVGAAAP 161 (224)
T ss_dssp GGGCCEEEEEECSBBS
T ss_pred chhhhhhhhhhhcchh
Confidence 1234789999988754
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=90.81 E-value=2.8 Score=32.91 Aligned_cols=81 Identities=15% Similarity=0.087 Sum_probs=48.8
Q ss_pred CCEEEEEcCCCchHHH--HHHHHHHC----CCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 16 GKTAIVTGSNTGIGKC--TANELAKR----GARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 16 gk~aLITGas~gIG~a--ia~~L~~~----G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
..++.|.|| |.+|.. ++..|+.. +.+|++.+.++++++.....++..........++... +|. +..
T Consensus 2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~----td~---~ea 73 (171)
T d1obba1 2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKT----MNL---DDV 73 (171)
T ss_dssp CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEE----SCH---HHH
T ss_pred CcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEe----CCh---hhc
Confidence 357888897 666654 55556543 3589999999998877666665543333333333221 221 222
Q ss_pred HHHHHhcCCCeeEEEEcCCCCC
Q psy13409 90 AQEILDNESAIHLLINNAGVMM 111 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~~ 111 (330)
+ ...|++|+.++...
T Consensus 74 L-------~dad~Vv~~~~~g~ 88 (171)
T d1obba1 74 I-------IDADFVINTAMVGG 88 (171)
T ss_dssp H-------TTCSEEEECCCTTH
T ss_pred c-------cCCCeEeeeccccc
Confidence 2 23599999988653
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=90.70 E-value=0.14 Score=41.89 Aligned_cols=40 Identities=23% Similarity=0.266 Sum_probs=36.0
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChh
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLE 51 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~ 51 (330)
..+|.||++.|.|. |.||+.+++.|...|++|+..++...
T Consensus 44 ~~eL~gktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~ 83 (193)
T d1mx3a1 44 AARIRGETLGIIGL-GRVGQAVALRAKAFGFNVLFYDPYLS 83 (193)
T ss_dssp CCCCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred ceeeeCceEEEecc-ccccccceeeeeccccceeeccCccc
Confidence 35699999999988 99999999999999999999988654
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=90.64 E-value=0.13 Score=39.90 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=30.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCC--EEEEEecCh
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGA--RVIMACRSL 50 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~--~Vil~~R~~ 50 (330)
.||+++|.|| |-+|..+|..|.+.+. +|+++.+++
T Consensus 1 ~gkrivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 1 AGRKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CCCcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 5899999999 8899999999999884 788887764
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=90.57 E-value=0.16 Score=38.76 Aligned_cols=35 Identities=20% Similarity=0.157 Sum_probs=32.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL 50 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~ 50 (330)
.+++++|.|| |-+|.++|..|.+.|.+|.++.+.+
T Consensus 34 ~~k~v~VIGg-G~iG~E~A~~l~~~g~~Vtvie~~~ 68 (133)
T d1q1ra2 34 ADNRLVVIGG-GYIGLEVAATAIKANMHVTLLDTAA 68 (133)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred cCCEEEEECC-chHHHHHHHHHHhhCcceeeeeecc
Confidence 5789999998 9999999999999999999999864
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=90.52 E-value=0.12 Score=42.61 Aligned_cols=39 Identities=26% Similarity=0.213 Sum_probs=35.5
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChh
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLE 51 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~ 51 (330)
.+|.||++.|.|. |.||+.+++.|...|++|+..++...
T Consensus 41 ~~l~~ktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~ 79 (199)
T d1dxya1 41 KELGQQTVGVMGT-GHIGQVAIKLFKGFGAKVIAYDPYPM 79 (199)
T ss_dssp CCGGGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred ccccceeeeeeec-ccccccccccccccceeeeccCCccc
Confidence 4689999999998 99999999999999999999988643
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=90.45 E-value=0.29 Score=39.60 Aligned_cols=39 Identities=15% Similarity=0.080 Sum_probs=35.5
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL 50 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~ 50 (330)
..+++|+++.|.|. |.||.++++.|...|.+|+..++..
T Consensus 39 ~~~l~~~~vgiiG~-G~IG~~va~~l~~fg~~v~~~d~~~ 77 (188)
T d2naca1 39 AYDLEAMHVGTVAA-GRIGLAVLRRLAPFDVHLHYTDRHR 77 (188)
T ss_dssp CCCCTTCEEEEECC-SHHHHHHHHHHGGGTCEEEEECSSC
T ss_pred ceeccccceeeccc-cccchhhhhhhhccCceEEEEeecc
Confidence 45689999999998 9999999999999999999999864
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=90.33 E-value=0.39 Score=35.89 Aligned_cols=34 Identities=21% Similarity=0.187 Sum_probs=31.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL 50 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~ 50 (330)
-|+++|.|| |-||.++|..|.+.|.+|.++.|.+
T Consensus 25 p~~~viiG~-G~iglE~A~~~~~~G~~Vtvi~~~~ 58 (123)
T d1dxla2 25 PKKLVVIGA-GYIGLEMGSVWGRIGSEVTVVEFAS 58 (123)
T ss_dssp CSEEEESCC-SHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCeEEEEcc-chHHHHHHHHHHhcCCeEEEEEEcc
Confidence 478999999 9999999999999999999998865
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.86 E-value=0.15 Score=38.41 Aligned_cols=32 Identities=28% Similarity=0.278 Sum_probs=29.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHCCCEEEEEecC
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRS 49 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~G~~Vil~~R~ 49 (330)
++++|.|| |-||.++|..|.+.|.+|.++.|+
T Consensus 21 ~~vvIIGg-G~iG~E~A~~l~~lG~~Vtii~~~ 52 (122)
T d1h6va2 21 GKTLVVGA-SYVALECAGFLAGIGLDVTVMVRS 52 (122)
T ss_dssp CSEEEECC-SHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CeEEEECC-CccHHHHHHHHhhcCCeEEEEEec
Confidence 67889998 999999999999999999999876
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=89.58 E-value=3.3 Score=35.90 Aligned_cols=83 Identities=13% Similarity=0.107 Sum_probs=56.0
Q ss_pred CCCEEEEEcC-CCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 15 DGKTAIVTGS-NTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 15 ~gk~aLITGa-s~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
.|++||=.++ +|+++.+++ ..|+ +|+.++.++..++.+.+.+.... ...++.++..|+.+ ....
T Consensus 145 ~g~~VLDl~~g~G~~si~~a----~~ga~~V~~vD~s~~al~~a~~N~~~ng----l~~~~~~~~~d~~~------~~~~ 210 (324)
T d2as0a2 145 PGDRVLDVFTYTGGFAIHAA----IAGADEVIGIDKSPRAIETAKENAKLNG----VEDRMKFIVGSAFE------EMEK 210 (324)
T ss_dssp TTCEEEETTCTTTHHHHHHH----HTTCSEEEEEESCHHHHHHHHHHHHHTT----CGGGEEEEESCHHH------HHHH
T ss_pred CCCeeecccCcccchhhhhh----hcCCcEEEeecCCHHHHHHHHHHHHHcC----CCccceeeechhhh------hhHH
Confidence 4888886664 566665544 4676 79999999998877766655431 23577888888732 3333
Q ss_pred HHhcCCCeeEEEEcCCCCC
Q psy13409 93 ILDNESAIHLLINNAGVMM 111 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~~~ 111 (330)
......+.|++|.++....
T Consensus 211 ~~~~~~~fD~Vi~DpP~~~ 229 (324)
T d2as0a2 211 LQKKGEKFDIVVLDPPAFV 229 (324)
T ss_dssp HHHTTCCEEEEEECCCCSC
T ss_pred HHhccCCCCchhcCCcccc
Confidence 4445568999999876543
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.42 E-value=0.64 Score=38.22 Aligned_cols=85 Identities=12% Similarity=0.119 Sum_probs=57.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcc------------cCCCCeEEEEEccCC
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKD------------VKDAGEVVIRQLDLS 81 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~------------~~~~~~v~~i~~Dls 81 (330)
..+++||..|++.| ..+..|+++|++|+.++-++..++.+.+........ .....++.++.+|+.
T Consensus 44 ~~~~rvLd~GCG~G---~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 120 (229)
T d2bzga1 44 KSGLRVFFPLCGKA---VEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF 120 (229)
T ss_dssp CCSCEEEETTCTTC---THHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred CCCCEEEEeCCCCc---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence 36889999998776 457888999999999999998876665543321100 013467888999886
Q ss_pred CHHHHHHHHHHHHhcCCCeeEEEEcCCCC
Q psy13409 82 SLKSVRKCAQEILDNESAIHLLINNAGVM 110 (330)
Q Consensus 82 ~~~si~~l~~~i~~~~g~iDvlInnAG~~ 110 (330)
+... ...+..|+++......
T Consensus 121 ~l~~---------~~~~~fd~i~~~~~l~ 140 (229)
T d2bzga1 121 DLPR---------TNIGKFDMIWDRGALV 140 (229)
T ss_dssp GGGG---------SCCCCEEEEEESSSTT
T ss_pred hccc---------cccCceeEEEEEEEEE
Confidence 5331 2235678777665543
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=88.52 E-value=0.17 Score=42.51 Aligned_cols=31 Identities=29% Similarity=0.265 Sum_probs=28.7
Q ss_pred EEEEcCCCchHHHHHHHHHHCCCEEEEEecCh
Q psy13409 19 AIVTGSNTGIGKCTANELAKRGARVIMACRSL 50 (330)
Q Consensus 19 aLITGas~gIG~aia~~L~~~G~~Vil~~R~~ 50 (330)
|+|.|| |-+|.++|.+|+++|.+|+++.+..
T Consensus 7 vvIIGa-Gi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 7 AVVIGG-GIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp EEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred EEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 788888 9999999999999999999999864
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=88.42 E-value=0.37 Score=38.81 Aligned_cols=37 Identities=24% Similarity=0.214 Sum_probs=33.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL 50 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~ 50 (330)
..+.|+++|.|| |-.|.+.|..|+++|++|++..++.
T Consensus 40 ~~~~k~V~IIGa-GPAGL~AA~~la~~G~~Vtl~E~~~ 76 (179)
T d1ps9a3 40 AVQKKNLAVVGA-GPAGLAFAINAAARGHQVTLFDAHS 76 (179)
T ss_dssp CSSCCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCCCcEEEEECc-cHHHHHHHHHHHhhccceEEEeccC
Confidence 357899999999 8889999999999999999999864
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=88.40 E-value=2.3 Score=33.52 Aligned_cols=77 Identities=22% Similarity=0.200 Sum_probs=53.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.|.++|=.|+++| .++..|++.+.+|+.++.++..++.+.+.+++.. ...++.++.+|..+ ..
T Consensus 33 ~g~~VLDiGcGsG---~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~g----l~~~v~~~~gda~~----------~~ 95 (186)
T d1l3ia_ 33 KNDVAVDVGCGTG---GVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHG----LGDNVTLMEGDAPE----------AL 95 (186)
T ss_dssp TTCEEEEESCTTS---HHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTT----CCTTEEEEESCHHH----------HH
T ss_pred CCCEEEEEECCeE---cccccccccceEEEEecCCHHHHHHHHHHHHHcC----CCcceEEEECchhh----------cc
Confidence 5888888887665 2334456677899999999998888777766531 24689999888522 22
Q ss_pred hcCCCeeEEEEcCC
Q psy13409 95 DNESAIHLLINNAG 108 (330)
Q Consensus 95 ~~~g~iDvlInnAG 108 (330)
.....+|.++.+.+
T Consensus 96 ~~~~~~D~v~~~~~ 109 (186)
T d1l3ia_ 96 CKIPDIDIAVVGGS 109 (186)
T ss_dssp TTSCCEEEEEESCC
T ss_pred cccCCcCEEEEeCc
Confidence 33457899887654
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=88.33 E-value=2.8 Score=31.92 Aligned_cols=79 Identities=10% Similarity=0.164 Sum_probs=53.3
Q ss_pred CCCCCEEEEEc-CCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 13 RLDGKTAIVTG-SNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 13 ~~~gk~aLITG-as~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
+++|+++|=.| |+|.+|.+ .+.+|+ +|+.++.+....+.+.+-++.. ....++.++..|... ++
T Consensus 12 ~~~g~~vlDl~~GtG~~~ie----a~~rga~~v~~ve~~~~a~~~~~~n~~~~----~~~~~~~ii~~D~~~------~l 77 (152)
T d2esra1 12 YFNGGRVLDLFAGSGGLAIE----AVSRGMSAAVLVEKNRKAQAIIQDNIIMT----KAENRFTLLKMEAER------AI 77 (152)
T ss_dssp CCCSCEEEEETCTTCHHHHH----HHHTTCCEEEEECCCHHHHHHHHHHHHTT----TCGGGEEEECSCHHH------HH
T ss_pred hCCCCeEEEcCCccCHHHHH----HHHhCcceeeeehhchhhhhhhhhhhhhc----ccccchhhhcccccc------cc
Confidence 57899999666 45556654 456786 8999999988776665555432 234678999888532 22
Q ss_pred HHHHhcCCCeeEEEEcCC
Q psy13409 91 QEILDNESAIHLLINNAG 108 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG 108 (330)
+ ......|+++..+.
T Consensus 78 ~---~~~~~fDiIf~DPP 92 (152)
T d2esra1 78 D---CLTGRFDLVFLDPP 92 (152)
T ss_dssp H---HBCSCEEEEEECCS
T ss_pred c---ccccccceeEechh
Confidence 2 23457899988763
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=88.16 E-value=0.25 Score=40.80 Aligned_cols=35 Identities=26% Similarity=0.150 Sum_probs=31.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL 50 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~ 50 (330)
..++|+|.|| |--|..+|..|+++|++|+++.|++
T Consensus 3 ~~~kV~IiGa-G~aGl~~A~~L~~~G~~v~v~Er~~ 37 (265)
T d2voua1 3 TTDRIAVVGG-SISGLTAALMLRDAGVDVDVYERSP 37 (265)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCcEEEECc-CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 5678999999 8889999999999999999998865
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=87.96 E-value=2.5 Score=35.92 Aligned_cols=79 Identities=19% Similarity=0.227 Sum_probs=52.8
Q ss_pred CEEEEEcCCCc-hHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 17 KTAIVTGSNTG-IGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 17 k~aLITGas~g-IG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
++++-.|+++| |+.+++ + ...++|++++.++..++-+.+-.+.. +...++.++..|+.+. ..+
T Consensus 112 ~~vld~g~GsG~i~~~la-~--~~~~~v~a~Dis~~Al~~A~~Na~~~----~~~~~~~i~~~~~~~~---------~~~ 175 (271)
T d1nv8a_ 112 KTVADIGTGSGAIGVSVA-K--FSDAIVFATDVSSKAVEIARKNAERH----GVSDRFFVRKGEFLEP---------FKE 175 (271)
T ss_dssp CEEEEESCTTSHHHHHHH-H--HSSCEEEEEESCHHHHHHHHHHHHHT----TCTTSEEEEESSTTGG---------GGG
T ss_pred cEEEEeeeeeehhhhhhh-h--cccceeeechhhhhHHHHHHHHHHHc----CCCceeEEeecccccc---------ccc
Confidence 45665565555 555543 3 35679999999998877666555442 1345777888888653 223
Q ss_pred cCCCeeEEEEcCCCCC
Q psy13409 96 NESAIHLLINNAGVMM 111 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~ 111 (330)
..+++|++|.|.-+..
T Consensus 176 ~~~~fDlIVsNPPYI~ 191 (271)
T d1nv8a_ 176 KFASIEMILSNPPYVK 191 (271)
T ss_dssp GTTTCCEEEECCCCBC
T ss_pred ccCcccEEEEcccccC
Confidence 4578999999998775
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=87.76 E-value=0.43 Score=37.38 Aligned_cols=68 Identities=19% Similarity=0.067 Sum_probs=48.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcc-------cCCCCeEEEEEccCCCHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKD-------VKDAGEVVIRQLDLSSLK 84 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~-------~~~~~~v~~i~~Dls~~~ 84 (330)
..|++||..|++.| ..+..|+++|++|+.++.++.-++...+..+..... ......+.++.+|+.+..
T Consensus 19 ~~~~rvLd~GCG~G---~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 93 (201)
T d1pjza_ 19 VPGARVLVPLCGKS---QDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALT 93 (201)
T ss_dssp CTTCEEEETTTCCS---HHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSST
T ss_pred CCCCEEEEecCcCC---HHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccc
Confidence 47899999998777 367788999999999999998887776655332110 001344567788887744
|
| >d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Thermotoga maritima [TaxId: 2336]
Probab=87.68 E-value=2.7 Score=30.62 Aligned_cols=82 Identities=12% Similarity=0.261 Sum_probs=56.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 16 gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
||++||.=-..-+-..+...|.+.|+.|+.++.+.... .+.+++. ...+.++..++-+.+.+ .+++++++
T Consensus 1 GkrILivDD~~~~~~~l~~~L~~~g~~v~~~a~~~~~a---l~~~~~~------~~dliilD~~mp~~~G~-e~~~~ir~ 70 (118)
T d1u0sy_ 1 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREA---VEKYKEL------KPDIVTMDITMPEMNGI-DAIKEIMK 70 (118)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHH---HHHHHHH------CCSEEEEECSCGGGCHH-HHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCHHHH---HHHHHhc------cCCEEEEecCCCCCCHH-HHHHHHHH
Confidence 78999999989999999999999999998777665443 3333332 34566665555555444 45566666
Q ss_pred cCCCeeEEEEcC
Q psy13409 96 NESAIHLLINNA 107 (330)
Q Consensus 96 ~~g~iDvlInnA 107 (330)
....+-+++..+
T Consensus 71 ~~~~~pvi~ls~ 82 (118)
T d1u0sy_ 71 IDPNAKIIVCSA 82 (118)
T ss_dssp HCTTCCEEEEEC
T ss_pred hCCCCcEEEEEc
Confidence 666677766654
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=87.63 E-value=0.28 Score=42.82 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=31.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChh
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLE 51 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~ 51 (330)
+.|+++|.|| |--|..+|..|+++|++|.++.++..
T Consensus 1 k~KKI~IIGa-G~sGL~aA~~L~k~G~~V~viEk~~~ 36 (314)
T d2bi7a1 1 KSKKILIVGA-GFSGAVIGRQLAEKGHQVHIIDQRDH 36 (314)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCCEEEEECC-cHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 4689999999 77899999999999999999988753
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=87.55 E-value=0.4 Score=37.03 Aligned_cols=37 Identities=16% Similarity=0.211 Sum_probs=30.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHH
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAET 55 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~ 55 (330)
++.|.|. |-+|.++++.|+++|++|++.+++.....+
T Consensus 2 kIgiIG~-G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~ 38 (152)
T d1i36a2 2 RVGFIGF-GEVAQTLASRLRSRGVEVVTSLEGRSPSTI 38 (152)
T ss_dssp EEEEESC-SHHHHHHHHHHHHTTCEEEECCTTCCHHHH
T ss_pred EEEEEcH-HHHHHHHHHHHHHCCCeEEEEcCchhHHHH
Confidence 4667766 999999999999999999998887765443
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=87.31 E-value=0.45 Score=39.20 Aligned_cols=37 Identities=16% Similarity=0.210 Sum_probs=33.1
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL 50 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~ 50 (330)
.-.+|+++|.|| |-.|...|..|+++|++|.++.++.
T Consensus 46 ~~~~k~VvIIGa-GpAGl~aA~~l~~~G~~v~l~E~~~ 82 (233)
T d1djqa3 46 TKNKDSVLIVGA-GPSGSEAARVLMESGYTVHLTDTAE 82 (233)
T ss_dssp CSSCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred ccCCceEEEEcc-cHHHHHHHHHHHHhccceeeEeecc
Confidence 357899999999 8889999999999999999998764
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=87.00 E-value=0.45 Score=36.70 Aligned_cols=38 Identities=18% Similarity=0.175 Sum_probs=31.0
Q ss_pred CCCCEEEEE-cCCCchHHHHHHHHHHCCCEEEEEecChh
Q psy13409 14 LDGKTAIVT-GSNTGIGKCTANELAKRGARVIMACRSLE 51 (330)
Q Consensus 14 ~~gk~aLIT-Gas~gIG~aia~~L~~~G~~Vil~~R~~~ 51 (330)
.-++.++|. .+++.||.++|..|++.|++|.++.+...
T Consensus 37 ~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~ 75 (156)
T d1djqa2 37 KIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL 75 (156)
T ss_dssp CCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred ccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence 346666665 35699999999999999999999988753
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=86.99 E-value=0.41 Score=36.01 Aligned_cols=35 Identities=14% Similarity=0.050 Sum_probs=31.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL 50 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~ 50 (330)
..+.++|.|| |-||.++|..|.+.|.+|.++.+.+
T Consensus 25 ~p~~vvIiGg-G~IG~E~A~~~~~~G~~Vtive~~~ 59 (125)
T d1ojta2 25 VPGKLLIIGG-GIIGLEMGTVYSTLGSRLDVVEMMD 59 (125)
T ss_dssp CCSEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred cCCeEEEECC-CHHHHHHHHHhhcCCCEEEEEEeec
Confidence 3588999999 9999999999999999999998764
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=86.86 E-value=3.1 Score=32.21 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=32.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHC--CCEEEEE--ecChhHHHHHHHHH
Q psy13409 17 KTAIVTGSNTGIGKCTANELAKR--GARVIMA--CRSLEKAETAADDI 60 (330)
Q Consensus 17 k~aLITGas~gIG~aia~~L~~~--G~~Vil~--~R~~~~l~~~~~~l 60 (330)
|++.|.|+||.||.....-+.++ .++|+.. .+|.+.+.+...++
T Consensus 2 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~N~~~L~~q~~~f 49 (151)
T d1q0qa2 2 KQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEF 49 (151)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESSCHHHHHHHHHHH
T ss_pred CeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecCcHHHHHHHHHHH
Confidence 57999999999999999988887 3676554 45555555555444
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=86.85 E-value=2.1 Score=36.05 Aligned_cols=75 Identities=16% Similarity=0.148 Sum_probs=52.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
...|+++|=.|+++|+ ++..+++.|++|+.++.++..++.+.+..+.. +.++.++..|+.+ .
T Consensus 118 ~~~g~~VLDiGcGsG~---l~i~aa~~g~~V~gvDis~~av~~A~~na~~n------~~~~~~~~~d~~~------~--- 179 (254)
T d2nxca1 118 LRPGDKVLDLGTGSGV---LAIAAEKLGGKALGVDIDPMVLPQAEANAKRN------GVRPRFLEGSLEA------A--- 179 (254)
T ss_dssp CCTTCEEEEETCTTSH---HHHHHHHTTCEEEEEESCGGGHHHHHHHHHHT------TCCCEEEESCHHH------H---
T ss_pred cCccCEEEEcccchhH---HHHHHHhcCCEEEEEECChHHHHHHHHHHHHc------CCceeEEeccccc------c---
Confidence 3579999999998886 23356678999999999999888777665542 4455667766421 1
Q ss_pred HHhcCCCeeEEEEcC
Q psy13409 93 ILDNESAIHLLINNA 107 (330)
Q Consensus 93 i~~~~g~iDvlInnA 107 (330)
. ..++.|+++.|.
T Consensus 180 -~-~~~~fD~V~ani 192 (254)
T d2nxca1 180 -L-PFGPFDLLVANL 192 (254)
T ss_dssp -G-GGCCEEEEEEEC
T ss_pred -c-cccccchhhhcc
Confidence 1 235789998773
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=86.74 E-value=1.1 Score=37.16 Aligned_cols=86 Identities=16% Similarity=0.189 Sum_probs=58.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHH-CC----CEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAK-RG----ARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~-~G----~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
+|.+||..|+++|--.++..+++. .| .+|+.+.++++-++...+.+...........++.++..|..+..
T Consensus 80 ~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~----- 154 (223)
T d1r18a_ 80 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGY----- 154 (223)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCC-----
T ss_pred CCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccc-----
Confidence 689999999988877777777764 44 48999999987766665544332110001357888888875411
Q ss_pred HHHHHhcCCCeeEEEEcCCCC
Q psy13409 90 AQEILDNESAIHLLINNAGVM 110 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~ 110 (330)
...+..|.++.+++..
T Consensus 155 -----~~~~~fD~Iiv~~a~~ 170 (223)
T d1r18a_ 155 -----PPNAPYNAIHVGAAAP 170 (223)
T ss_dssp -----GGGCSEEEEEECSCBS
T ss_pred -----ccccceeeEEEEeech
Confidence 1235789999988864
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=86.71 E-value=1.3 Score=36.65 Aligned_cols=76 Identities=12% Similarity=0.026 Sum_probs=52.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.|.+||-.|+++|--.+ .|++.+.+|+.+.+++...+.+.+.+. ...++.++..|...--
T Consensus 70 ~g~~VLdIG~GsGy~ta---~La~l~~~V~aiE~~~~~~~~A~~~~~-------~~~nv~~~~~d~~~g~---------- 129 (224)
T d1vbfa_ 70 KGQKVLEIGTGIGYYTA---LIAEIVDKVVSVEINEKMYNYASKLLS-------YYNNIKLILGDGTLGY---------- 129 (224)
T ss_dssp TTCEEEEECCTTSHHHH---HHHHHSSEEEEEESCHHHHHHHHHHHT-------TCSSEEEEESCGGGCC----------
T ss_pred ccceEEEecCCCCHHHH---HHHHHhcccccccccHHHHHHHHHHHh-------cccccccccCchhhcc----------
Confidence 68899999998885444 455556799999999887666544332 2467888888875411
Q ss_pred hcCCCeeEEEEcCCCC
Q psy13409 95 DNESAIHLLINNAGVM 110 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~ 110 (330)
...++.|.+|.+++..
T Consensus 130 ~~~~pfD~Iiv~~a~~ 145 (224)
T d1vbfa_ 130 EEEKPYDRVVVWATAP 145 (224)
T ss_dssp GGGCCEEEEEESSBBS
T ss_pred hhhhhHHHHHhhcchh
Confidence 1235789999888753
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=86.60 E-value=1.5 Score=34.85 Aligned_cols=76 Identities=13% Similarity=0.050 Sum_probs=54.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
++.+||=.|++.|. ++..|++.|++|+.++.++.-++.+.+..... +..+..+..|..+..
T Consensus 37 ~~~~ILDiGcG~G~---~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~------~~~~~~~~~d~~~l~---------- 97 (226)
T d1ve3a1 37 KRGKVLDLACGVGG---FSFLLEDYGFEVVGVDISEDMIRKAREYAKSR------ESNVEFIVGDARKLS---------- 97 (226)
T ss_dssp SCCEEEEETCTTSH---HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCCEEEECCTTSCC----------
T ss_pred CCCEEEEECCCcch---hhhhHhhhhcccccccccccchhhhhhhhccc------ccccccccccccccc----------
Confidence 45678999988775 56678889999999999988877776655542 456677888887632
Q ss_pred hcCCCeeEEEEcCCC
Q psy13409 95 DNESAIHLLINNAGV 109 (330)
Q Consensus 95 ~~~g~iDvlInnAG~ 109 (330)
...+..|++++....
T Consensus 98 ~~~~~fD~I~~~~~l 112 (226)
T d1ve3a1 98 FEDKTFDYVIFIDSI 112 (226)
T ss_dssp SCTTCEEEEEEESCG
T ss_pred ccCcCceEEEEecch
Confidence 112468998877543
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=86.49 E-value=0.29 Score=41.20 Aligned_cols=35 Identities=26% Similarity=0.263 Sum_probs=31.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL 50 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~ 50 (330)
+-|+|+|.|| |--|...|..|+++|++|+++.++.
T Consensus 29 ~pkkV~IIGa-G~aGLsaA~~L~~~G~~V~vlE~~~ 63 (370)
T d2iida1 29 NPKHVVIVGA-GMAGLSAAYVLAGAGHQVTVLEASE 63 (370)
T ss_dssp SCCEEEEECC-BHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 4579999999 7779999999999999999998764
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=86.18 E-value=1 Score=32.17 Aligned_cols=37 Identities=16% Similarity=0.060 Sum_probs=30.7
Q ss_pred CCCEEEEEcCCCchH-HHHHHHHHHCCCEEEEEecChhH
Q psy13409 15 DGKTAIVTGSNTGIG-KCTANELAKRGARVIMACRSLEK 52 (330)
Q Consensus 15 ~gk~aLITGas~gIG-~aia~~L~~~G~~Vil~~R~~~~ 52 (330)
+.|++.+.|- +|+| .++|+.|.++|+.|...|+....
T Consensus 7 ~~~~ihfiGi-gG~GMs~LA~~L~~~G~~VsGSD~~~~~ 44 (96)
T d1p3da1 7 RVQQIHFIGI-GGAGMSGIAEILLNEGYQISGSDIADGV 44 (96)
T ss_dssp TCCEEEEETT-TSTTHHHHHHHHHHHTCEEEEEESCCSH
T ss_pred hCCEEEEEEE-CHHHHHHHHHHHHhCCCEEEEEeCCCCh
Confidence 5688999987 6666 56799999999999999998654
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.99 E-value=5 Score=34.47 Aligned_cols=78 Identities=21% Similarity=0.163 Sum_probs=52.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQE 92 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~ 92 (330)
++|++||-.|++.|+ ++..+++.|+ +|++++.++ .+..+.+..+.. +...++.++..|+.+.+
T Consensus 37 ~~~~~VLDlGcGtG~---ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~----~~~~~i~~i~~~~~~l~-------- 100 (328)
T d1g6q1_ 37 FKDKIVLDVGCGTGI---LSMFAAKHGAKHVIGVDMSS-IIEMAKELVELN----GFSDKITLLRGKLEDVH-------- 100 (328)
T ss_dssp HTTCEEEEETCTTSH---HHHHHHHTCCSEEEEEESST-HHHHHHHHHHHT----TCTTTEEEEESCTTTSC--------
T ss_pred CCcCEEEEeCCCCCH---HHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHh----CccccceEEEeehhhcc--------
Confidence 579999999988774 4556677887 799998775 333333333322 24678999999987642
Q ss_pred HHhcCCCeeEEEEcCCC
Q psy13409 93 ILDNESAIHLLINNAGV 109 (330)
Q Consensus 93 i~~~~g~iDvlInnAG~ 109 (330)
-.....|+++...-.
T Consensus 101 --~~~~~~D~i~se~~~ 115 (328)
T d1g6q1_ 101 --LPFPKVDIIISEWMG 115 (328)
T ss_dssp --CSSSCEEEEEECCCB
T ss_pred --CcccceeEEEEEecc
Confidence 112468999886543
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=85.70 E-value=0.44 Score=38.58 Aligned_cols=44 Identities=16% Similarity=0.108 Sum_probs=37.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAAD 58 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~ 58 (330)
+.--.++|.|| |-.|++-++-....|++|.+.+.+..+++++.+
T Consensus 27 V~pa~VvViGa-GvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~ 70 (183)
T d1l7da1 27 VPPARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAATKEQVES 70 (183)
T ss_dssp ECCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHH
T ss_pred cCCcEEEEEcC-cHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHH
Confidence 44568999999 889999999999999999999999988766543
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.56 E-value=0.57 Score=40.75 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=33.1
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEec
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACR 48 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R 48 (330)
..+|+||+++|-|- |.+|.++|+.|.+.|++|+.++-
T Consensus 31 ~~~L~gktvaIqGf-GnVG~~~A~~L~e~Gakvv~vsD 67 (293)
T d1hwxa1 31 TPGFGDKTFAVQGF-GNVGLHSMRYLHRFGAKCVAVGE 67 (293)
T ss_dssp CSSSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEc
Confidence 34799999999998 89999999999999999988764
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=85.51 E-value=2.3 Score=33.60 Aligned_cols=77 Identities=12% Similarity=0.141 Sum_probs=55.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
+++.+||=.|++.| + .+..|+++|++|+.++.++..++.+.+..... .-.++.+...|+.+..
T Consensus 29 ~~~grvLDiGcG~G--~-~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~-----~~~~~~~~~~d~~~~~--------- 91 (198)
T d2i6ga1 29 VAPGRTLDLGCGNG--R-NSLYLAANGYDVTAWDKNPASMANLERIKAAE-----GLDNLQTDLVDLNTLT--------- 91 (198)
T ss_dssp SCSCEEEEETCTTS--H-HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-----TCTTEEEEECCTTTCC---------
T ss_pred CCCCcEEEECCCCC--H-HHHHHHHHhhhhccccCcHHHHHHHHHHhhhc-----cccchhhhheeccccc---------
Confidence 46678999998655 3 55678889999999999998887776655542 2346788888887633
Q ss_pred HhcCCCeeEEEEcCCC
Q psy13409 94 LDNESAIHLLINNAGV 109 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~ 109 (330)
..+..|+++.+.-.
T Consensus 92 --~~~~fD~I~~~~~~ 105 (198)
T d2i6ga1 92 --FDGEYDFILSTVVM 105 (198)
T ss_dssp --CCCCEEEEEEESCG
T ss_pred --ccccccEEEEeeee
Confidence 12468998876643
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=85.42 E-value=0.49 Score=39.95 Aligned_cols=36 Identities=36% Similarity=0.529 Sum_probs=32.2
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEec
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACR 48 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R 48 (330)
.+|+|++++|-|- |.+|.++|+.|.+.|++|+.++-
T Consensus 27 ~~l~g~~v~IqGf-GnVG~~~a~~L~~~Gakvv~vsD 62 (242)
T d1v9la1 27 GGIEGKTVAIQGM-GNVGRWTAYWLEKMGAKVIAVSD 62 (242)
T ss_dssp SCCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEEEC
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEeec
Confidence 3689999999986 99999999999999999887664
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=85.15 E-value=1.8 Score=34.85 Aligned_cols=78 Identities=14% Similarity=0.086 Sum_probs=55.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEIL 94 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~ 94 (330)
.+++||=.|++.|+- +..|+++|++|+.++-+++-++.+.+.+... ...++.++.+|..+..-
T Consensus 15 ~~~rVLDiGcG~G~~---~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~-----~~~~i~~~~~d~~~l~~--------- 77 (231)
T d1vl5a_ 15 GNEEVLDVATGGGHV---ANAFAPFVKKVVAFDLTEDILKVARAFIEGN-----GHQQVEYVQGDAEQMPF--------- 77 (231)
T ss_dssp SCCEEEEETCTTCHH---HHHHGGGSSEEEEEESCHHHHHHHHHHHHHT-----TCCSEEEEECCC-CCCS---------
T ss_pred CcCEEEEecccCcHH---HHHHHHhCCEEEEEECCHHHHhhhhhccccc-----ccccccccccccccccc---------
Confidence 368999999887743 3567788999999999998777665555443 35678999999876420
Q ss_pred hcCCCeeEEEEcCCCC
Q psy13409 95 DNESAIHLLINNAGVM 110 (330)
Q Consensus 95 ~~~g~iDvlInnAG~~ 110 (330)
..+..|+++......
T Consensus 78 -~~~~fD~v~~~~~l~ 92 (231)
T d1vl5a_ 78 -TDERFHIVTCRIAAH 92 (231)
T ss_dssp -CTTCEEEEEEESCGG
T ss_pred -ccccccccccccccc
Confidence 125789998887654
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.12 E-value=0.35 Score=38.43 Aligned_cols=31 Identities=19% Similarity=0.138 Sum_probs=28.1
Q ss_pred EEEEcCCCchHHHHHHHHHHCCCEEEEEecCh
Q psy13409 19 AIVTGSNTGIGKCTANELAKRGARVIMACRSL 50 (330)
Q Consensus 19 aLITGas~gIG~aia~~L~~~G~~Vil~~R~~ 50 (330)
|+|.|| |--|...|..|++.|.+|.++.++.
T Consensus 8 viViGa-G~~Gl~~A~~La~~G~~V~vlE~~~ 38 (297)
T d2bcgg1 8 VIVLGT-GITECILSGLLSVDGKKVLHIDKQD 38 (297)
T ss_dssp EEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred EEEECc-CHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 788887 8889999999999999999999874
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=84.61 E-value=0.21 Score=36.45 Aligned_cols=38 Identities=13% Similarity=0.108 Sum_probs=32.1
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh
Q psy13409 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL 50 (330)
Q Consensus 12 ~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~ 50 (330)
.+++||+|+|.|+ |--|..+|.+|+..+.+|+...|..
T Consensus 28 ~~f~gK~VlVVG~-g~Sa~dia~~l~~~ak~v~~~~~r~ 65 (107)
T d2gv8a2 28 ELFVGESVLVVGG-ASSANDLVRHLTPVAKHPIYQSLLG 65 (107)
T ss_dssp GGGTTCCEEEECS-SHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred hhcCCCeEEEECC-CCCHHHHHHHHHHhcCEEEEEEecC
Confidence 4589999999999 5778999999999888877776654
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=84.54 E-value=0.37 Score=40.99 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=28.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHCCC-EEEEEecCh
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRGA-RVIMACRSL 50 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~~ 50 (330)
.|+|.|| |-+|.++|.+|+++|. +|+++.|+.
T Consensus 3 dViIIGa-Gi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 3 RIVIIGA-GIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 4889998 8999999999999996 699998863
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=84.43 E-value=0.38 Score=40.35 Aligned_cols=31 Identities=26% Similarity=0.428 Sum_probs=28.0
Q ss_pred EEEEcCCCchHHHHHHHHHHCCCEEEEEecCh
Q psy13409 19 AIVTGSNTGIGKCTANELAKRGARVIMACRSL 50 (330)
Q Consensus 19 aLITGas~gIG~aia~~L~~~G~~Vil~~R~~ 50 (330)
++|.|| |-.|..+|.+|+++|.+|+++.+..
T Consensus 6 vvIIGa-Gi~Gls~A~~La~~G~~V~viE~~~ 36 (281)
T d2gf3a1 6 VIVVGA-GSMGMAAGYQLAKQGVKTLLVDAFD 36 (281)
T ss_dssp EEEECC-SHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred EEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 788888 8899999999999999999998853
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=84.30 E-value=0.55 Score=40.01 Aligned_cols=37 Identities=27% Similarity=0.370 Sum_probs=32.6
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEec
Q psy13409 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACR 48 (330)
Q Consensus 11 ~~~~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R 48 (330)
..+++|++++|-|- |.+|..+++.|.+.|++|+.+.-
T Consensus 31 ~~~l~g~~v~IQGf-GnVG~~~a~~L~e~GakvvavsD 67 (255)
T d1bgva1 31 NDTLVGKTVALAGF-GNVAWGAAKKLAELGAKAVTLSG 67 (255)
T ss_dssp TCCSTTCEEEECCS-SHHHHHHHHHHHHHTCEEEEEEE
T ss_pred CCCCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEec
Confidence 35799999999995 99999999999999999887653
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=83.94 E-value=0.41 Score=37.30 Aligned_cols=32 Identities=16% Similarity=0.107 Sum_probs=26.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEe
Q psy13409 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMAC 47 (330)
Q Consensus 15 ~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~ 47 (330)
+++.|+|.|| |.+|.++|..|.+.|.+|.++.
T Consensus 2 ~~~~VvIIGg-G~~G~e~A~~l~~~g~~v~v~~ 33 (185)
T d1q1ra1 2 ANDNVVIVGT-GLAGVEVAFGLRASGWEGNIRL 33 (185)
T ss_dssp CSCEEEEECC-SHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCCEEEECC-cHHHHHHHHHHHHcCCceEEEE
Confidence 4788999998 9999999999999998654443
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=83.73 E-value=1.4 Score=31.04 Aligned_cols=70 Identities=16% Similarity=0.052 Sum_probs=46.2
Q ss_pred CEEEEEcCCCchHH-HHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHHHh
Q psy13409 17 KTAIVTGSNTGIGK-CTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILD 95 (330)
Q Consensus 17 k~aLITGas~gIG~-aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i~~ 95 (330)
+++-+.|- +|+|. ++|+.|.++|+.|...|+...... +.|++. +..+. ..-|..+
T Consensus 2 ~~ihfiGI-gG~GMs~LA~~L~~~G~~VsGSD~~~~~~t---~~L~~~------Gi~i~-~gh~~~~------------- 57 (89)
T d1j6ua1 2 MKIHFVGI-GGIGMSAVALHEFSNGNDVYGSNIEETERT---AYLRKL------GIPIF-VPHSADN------------- 57 (89)
T ss_dssp CEEEEETT-TSHHHHHHHHHHHHTTCEEEEECSSCCHHH---HHHHHT------TCCEE-SSCCTTS-------------
T ss_pred cEEEEEeE-CHHHHHHHHHHHHhCCCeEEEEeCCCChhH---HHHHHC------CCeEE-eeecccc-------------
Confidence 45677776 77787 789999999999999999865432 335442 43332 1112211
Q ss_pred cCCCeeEEEEcCCCCC
Q psy13409 96 NESAIHLLINNAGVMM 111 (330)
Q Consensus 96 ~~g~iDvlInnAG~~~ 111 (330)
....|++|...++..
T Consensus 58 -i~~~d~vV~SsAI~~ 72 (89)
T d1j6ua1 58 -WYDPDLVIKTPAVRD 72 (89)
T ss_dssp -CCCCSEEEECTTCCT
T ss_pred -cCCCCEEEEecCcCC
Confidence 235799999998863
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.54 E-value=0.36 Score=45.58 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=31.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHCCC-EEEEEecC
Q psy13409 13 RLDGKTAIVTGSNTGIGKCTANELAKRGA-RVIMACRS 49 (330)
Q Consensus 13 ~~~gk~aLITGas~gIG~aia~~L~~~G~-~Vil~~R~ 49 (330)
+|.+.+|+|.|+ ||+|.++++.|+..|. ++++++.+
T Consensus 22 ~L~~s~VlvvG~-gglG~Ei~knLvl~GVg~itivD~d 58 (529)
T d1yova1 22 ALESAHVCLINA-TATGTEILKNLVLPGIGSFTIIDGN 58 (529)
T ss_dssp HHHHCEEEECCC-SHHHHHHHHHHHTTTCSEEEEECCS
T ss_pred HHhCCCEEEECC-CHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 467889999998 8999999999999997 78888753
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=83.23 E-value=5.8 Score=30.77 Aligned_cols=78 Identities=12% Similarity=0.083 Sum_probs=47.6
Q ss_pred CCCEEEEEc-CCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 15 DGKTAIVTG-SNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 15 ~gk~aLITG-as~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
+|+++|=.| |+|.+|. +++++|++|++++.++..++.+.+-++... ...++....+ +.+....
T Consensus 41 ~g~~vLDl~~G~G~~~i----~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~----~~~~v~~~~~--------d~~~~~~ 104 (171)
T d1ws6a1 41 RRGRFLDPFAGSGAVGL----EAASEGWEAVLVEKDPEAVRLLKENVRRTG----LGARVVALPV--------EVFLPEA 104 (171)
T ss_dssp TCCEEEEETCSSCHHHH----HHHHTTCEEEEECCCHHHHHHHHHHHHHHT----CCCEEECSCH--------HHHHHHH
T ss_pred CCCeEEEeccccchhhh----hhhhccchhhhcccCHHHHhhhhHHHHhhc----cccceeeeeh--------hcccccc
Confidence 677888555 4555554 456689999999999988776666555431 2334433222 2233333
Q ss_pred HhcCCCeeEEEEcCC
Q psy13409 94 LDNESAIHLLINNAG 108 (330)
Q Consensus 94 ~~~~g~iDvlInnAG 108 (330)
.....+.|+++.++-
T Consensus 105 ~~~~~~fD~If~DPP 119 (171)
T d1ws6a1 105 KAQGERFTVAFMAPP 119 (171)
T ss_dssp HHTTCCEEEEEECCC
T ss_pred cccCCccceeEEccc
Confidence 344467899998864
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=82.99 E-value=1.2 Score=34.72 Aligned_cols=76 Identities=17% Similarity=0.072 Sum_probs=42.2
Q ss_pred EEEEEcCCCchHHHHHHH-HHH-C----CCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHH
Q psy13409 18 TAIVTGSNTGIGKCTANE-LAK-R----GARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQ 91 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~-L~~-~----G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~ 91 (330)
++.|.||++ +|...+-. |+. . +.+|++.+.++++++...+....... ....+.. - ++. ++.+
T Consensus 2 KIaiIGaGs-~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~---~~~~~~~---t-~~~---~~~l- 69 (162)
T d1up7a1 2 RIAVIGGGS-SYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVK---DRFKVLI---S-DTF---EGAV- 69 (162)
T ss_dssp EEEEETTTC-TTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHT---TSSEEEE---C-SSH---HHHH-
T ss_pred EEEEECCCH-HHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhc---cCceEEE---e-cCc---cccc-
Confidence 578889844 56555533 222 1 35899999999987765544333221 1223222 1 221 1111
Q ss_pred HHHhcCCCeeEEEEcCCCCC
Q psy13409 92 EILDNESAIHLLINNAGVMM 111 (330)
Q Consensus 92 ~i~~~~g~iDvlInnAG~~~ 111 (330)
..-|++|..+|...
T Consensus 70 ------~~aDvVVita~~~~ 83 (162)
T d1up7a1 70 ------VDAKYVIFQFRPGG 83 (162)
T ss_dssp ------TTCSEEEECCCTTH
T ss_pred ------CCCCEEEEecccCC
Confidence 23499999999753
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=82.95 E-value=3.7 Score=34.86 Aligned_cols=79 Identities=15% Similarity=0.117 Sum_probs=55.3
Q ss_pred CCCEEEEEc-CCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 15 DGKTAIVTG-SNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 15 ~gk~aLITG-as~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
++..+|=.| |||-||.+++..+ ...+|++++.++..++-+.+-.+.. .-.++.++..|+.+.-
T Consensus 108 ~~~~vlDlGtGSG~I~i~la~~~--p~~~v~avDis~~Al~~A~~Na~~~-----~~~~v~~~~~d~~~~~--------- 171 (274)
T d2b3ta1 108 QPCRILDLGTGTGAIALALASER--PDCEIIAVDRMPDAVSLAQRNAQHL-----AIKNIHILQSDWFSAL--------- 171 (274)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHC--TTSEEEEECSSHHHHHHHHHHHHHH-----TCCSEEEECCSTTGGG---------
T ss_pred cccceeeeehhhhHHHHHHHhhC--CcceeeeccchhHHHhHHHHHHHHh-----Ccccceeeeccccccc---------
Confidence 345566666 5677777777654 3569999999998877766655543 2246999999986532
Q ss_pred HhcCCCeeEEEEcCCCCC
Q psy13409 94 LDNESAIHLLINNAGVMM 111 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~~~ 111 (330)
...++|++|.|.-+..
T Consensus 172 --~~~~fDlIvsNPPYi~ 187 (274)
T d2b3ta1 172 --AGQQFAMIVSNPPYID 187 (274)
T ss_dssp --TTCCEEEEEECCCCBC
T ss_pred --CCCceeEEEecchhhh
Confidence 1247999999988764
|
| >d2fr1a2 c.2.1.2 (A:1448-1656) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=82.73 E-value=9.5 Score=30.00 Aligned_cols=134 Identities=12% Similarity=0.024 Sum_probs=72.9
Q ss_pred CCCCCEEEEEcCC--CchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHH
Q psy13409 13 RLDGKTAIVTGSN--TGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCA 90 (330)
Q Consensus 13 ~~~gk~aLITGas--~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~ 90 (330)
...|.+++|.... ...+.+++..|...|..++.+.-... .+ .+.+.
T Consensus 22 ~~~g~~lv~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~-----------------------------~~---~~~l~ 69 (209)
T d2fr1a2 22 RLDGTWLVAKYAGTADETSTAAREALESAGARVRELVVDAR-----------------------------CG---RDELA 69 (209)
T ss_dssp CCCSEEEEEECTTSSHHHHHHHHHHHHTTSCEEEEEECCTT-----------------------------CC---HHHHH
T ss_pred CCCCcEEEEeCCCCchHHHHHHHHHHHhCCCeEEEecCCCc-----------------------------cC---HHHHH
Confidence 3566666665433 34667788888888887766543321 01 12233
Q ss_pred HHHHhcCCCeeEEEEcCCCCCCCCCCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhCCCeEEEEcCCCcccCCCCCcccc
Q psy13409 91 QEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFED 170 (330)
Q Consensus 91 ~~i~~~~g~iDvlInnAG~~~~~~~~~~~~~~~~l~vN~~g~~~l~~~~l~~l~~~~~g~IV~iSS~~~~~~~~~~~~~~ 170 (330)
.. ....+.++.+|+..+......... +. ....+...+.++|.+.. .....++.+++......+.
T Consensus 70 ~~-~~~~~~~~~vv~l~~~~~~~~~~~-~~----~~~~~~~~l~l~qal~~---~~~~~~l~~vT~~a~~~~~------- 133 (209)
T d2fr1a2 70 ER-LRSVGEVAGVLSLLAVDEAEPEEA-PL----ALASLADTLSLVQAMVS---AELGCPLWTVTESAVATGP------- 133 (209)
T ss_dssp HH-HTTSCCCSEEEECTTTTCCCCSSC-GG----GCHHHHHHHHHHHHHHH---TTCCCCEEEEEESCSCSST-------
T ss_pred HH-hhccCCCCeEEEeCCCCCCCCcch-hH----HHHHHHHHHHHHHHHHh---CCCCCcEEEEEcCCcccCC-------
Confidence 22 234467888888876543221111 11 11234455556665533 2224667777654332221
Q ss_pred cccccCCCcchhhHHhHHHHHHHHHHHHHHhc
Q psy13409 171 INLEKGYSATGAYGRSKLANILFTTELAKRLQ 202 (330)
Q Consensus 171 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~~~~ 202 (330)
.-..-....+++.+|+|+++.|+-
T Consensus 134 --------~d~~~~p~~A~l~Gl~r~~~~E~P 157 (209)
T d2fr1a2 134 --------FERVRNAAHGALWGVGRVIALENP 157 (209)
T ss_dssp --------TSCCSCGGGHHHHHHHHHHHHHCG
T ss_pred --------CcccCCHhHHhHHHHHHHHHHhCC
Confidence 112234567899999999999974
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=81.11 E-value=8.2 Score=29.02 Aligned_cols=87 Identities=14% Similarity=0.081 Sum_probs=54.2
Q ss_pred CCCEEEEEcCC---CchHHHHHHHHHHCCCEEEEEecChhHHHH--HHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHH
Q psy13409 15 DGKTAIVTGSN---TGIGKCTANELAKRGARVIMACRSLEKAET--AADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKC 89 (330)
Q Consensus 15 ~gk~aLITGas---~gIG~aia~~L~~~G~~Vil~~R~~~~l~~--~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l 89 (330)
+-|++.|.|+| +..|..+++.|.+.|++|+.+..+...... +...+. ++.....+..+ +...+.+..+
T Consensus 18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i~G~~~~~sl~----dlp~~iD~v~i---~vp~~~~~~~ 90 (139)
T d2d59a1 18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVL----DIPDKIEVVDL---FVKPKLTMEY 90 (139)
T ss_dssp HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGG----GCSSCCSEEEE---CSCHHHHHHH
T ss_pred cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccccCCCccccccc----ccCccceEEEE---EeCHHHHHHH
Confidence 46899999998 689999999999999999998765321110 000011 11112222222 2356677788
Q ss_pred HHHHHhcCCCeeEEEEcCCCC
Q psy13409 90 AQEILDNESAIHLLINNAGVM 110 (330)
Q Consensus 90 ~~~i~~~~g~iDvlInnAG~~ 110 (330)
++++.+.. +..++...|..
T Consensus 91 ~~e~~~~g--~k~v~~~~G~~ 109 (139)
T d2d59a1 91 VEQAIKKG--AKVVWFQYNTY 109 (139)
T ss_dssp HHHHHHHT--CSEEEECTTCC
T ss_pred HHHHHHhC--CCEEEEecccc
Confidence 88877753 45677777754
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=80.85 E-value=2.9 Score=33.70 Aligned_cols=78 Identities=13% Similarity=0.072 Sum_probs=53.3
Q ss_pred CCCEEEEEcCCC-chHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 15 DGKTAIVTGSNT-GIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 15 ~gk~aLITGas~-gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
.+.++|=.|++. .+...+++.+...|++|+.++-+++-++.+.+.+.+.. ....+.....|+.+.+
T Consensus 39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~----~~~~~~~~~~d~~~~~--------- 105 (225)
T d1im8a_ 39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH----SEIPVEILCNDIRHVE--------- 105 (225)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSC----CSSCEEEECSCTTTCC---------
T ss_pred CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhc----ccchhhhccchhhccc---------
Confidence 577899999754 45566666555578999999999988887766665432 4567777777775422
Q ss_pred HhcCCCeeEEEEcCC
Q psy13409 94 LDNESAIHLLINNAG 108 (330)
Q Consensus 94 ~~~~g~iDvlInnAG 108 (330)
+...|+++.+..
T Consensus 106 ---~~~~d~i~~~~~ 117 (225)
T d1im8a_ 106 ---IKNASMVILNFT 117 (225)
T ss_dssp ---CCSEEEEEEESC
T ss_pred ---cccceeeEEeee
Confidence 235677666544
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=80.50 E-value=6.2 Score=30.94 Aligned_cols=79 Identities=16% Similarity=0.148 Sum_probs=53.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHCCCEEEEEecChhHHHHHHHHHHHhhcccCCCCeEEEEEccCCCHHHHHHHHHHH
Q psy13409 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93 (330)
Q Consensus 14 ~~gk~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~v~~i~~Dls~~~si~~l~~~i 93 (330)
..+++||=.|++.| .++..|++.+.+|++++.++..++.+.+.++... ....++.++..|+.+.-
T Consensus 51 ~~~~~VLDiGcG~G---~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~---l~~~~i~~~~~d~~~~~--------- 115 (194)
T d1dusa_ 51 DKDDDILDLGCGYG---VIGIALADEVKSTTMADINRRAIKLAKENIKLNN---LDNYDIRVVHSDLYENV--------- 115 (194)
T ss_dssp CTTCEEEEETCTTS---HHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTT---CTTSCEEEEECSTTTTC---------
T ss_pred CCCCeEEEEeecCC---hhHHHHHhhccccceeeeccccchhHHHHHHHhC---CccceEEEEEcchhhhh---------
Confidence 46899998887665 3344566678899999999887766655554321 12457889999986521
Q ss_pred HhcCCCeeEEEEcCCC
Q psy13409 94 LDNESAIHLLINNAGV 109 (330)
Q Consensus 94 ~~~~g~iDvlInnAG~ 109 (330)
.....|+++.|...
T Consensus 116 --~~~~fD~Ii~~~p~ 129 (194)
T d1dusa_ 116 --KDRKYNKIITNPPI 129 (194)
T ss_dssp --TTSCEEEEEECCCS
T ss_pred --ccCCceEEEEcccE
Confidence 12468999988653
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=80.09 E-value=0.56 Score=38.41 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=28.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHCCCEEEEEecCh
Q psy13409 18 TAIVTGSNTGIGKCTANELAKRGARVIMACRSL 50 (330)
Q Consensus 18 ~aLITGas~gIG~aia~~L~~~G~~Vil~~R~~ 50 (330)
.|+|.|| |--|+..|..|+++|++|+++.++.
T Consensus 2 ~V~IIGa-G~aGL~aA~~L~~~G~~V~vlE~~~ 33 (347)
T d2ivda1 2 NVAVVGG-GISGLAVAHHLRSRGTDAVLLESSA 33 (347)
T ss_dssp CEEEECC-BHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred eEEEECC-CHHHHHHHHHHHhCCCCEEEEecCC
Confidence 5889998 7789999999999999999998764
|