Diaphorina citri psyllid: psy14002

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450----
MVDVYGLAGIIIFYTLVLAIGVWAGTKQKNHGEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPLGYSLALVVGALLFVKPMREASYVTMLDPFQQAYGNRIGGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFAISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLLLAFGGIPWQCLSFPFAISNAQPYLKEPNMTIFSKVDWLGTVETKDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKLTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKVDLTPDEHPHYQVDLTGTAEKVQMSGLPDEHAHTIR
cccHHHHHHHHHHHHHHHHHHHHHEEEEcccccccEEEccccccHHHHHHHHHHHccccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHccccccccHHHHHHccccccccccccc
*VDVYGLAGIIIFYTLVLAIGVWAGTKQKNHGEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPLGYSLALVVGALLFVKPMREASYVTMLDPFQQAYGNRIGGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFAISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLLLAFGGIPWQCLSFPFAISNAQPYLKEPNMTIFSKVDWLGTVETKDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKLTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKVDLTPDEHPHYQVDLTGTAEKVQMS***********
xxxxHHHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHHHxxxxxxxxHHHHHHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHHHHHHHHHxxxxxxHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
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MVDVYGLAGIIIFYTLVLAIGVWAGTKQKNHGEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPLGYSLALVVGALLFVKPMREASYVTMLDPFQQAYGNRIGGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFAISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLLLAFGGIPWQCLSFPFAISNAQPYLKEPNMTIFSKVDWLGTVETKDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKLTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKVDLTPDEHPHYQVDLTGTAEKVQMSGLPDEHAHTIR

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
High-affinity choline transporter 1 Imports choline from the extracellular space to the neuron with high affinity. Choline uptake is the rate-limiting step in acetylcholine synthesis. Sodium ion and chloride ion dependent.confidentO02228
High affinity choline transporter 1 Imports choline from the extracellular space to the neuron with high affinity. Choline uptake is the rate-limiting step in acetylcholine synthesis. Sodium ion- and chloride ion-dependent.confidentQ9GZV3

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0030424 [CC]axonprobableGO:0044464, GO:0005623, GO:0005575, GO:0097458, GO:0043005, GO:0042995
GO:0055085 [BP]transmembrane transportprobableGO:0006810, GO:0009987, GO:0044765, GO:0008150, GO:0044763, GO:0051234, GO:0051179, GO:0044699
GO:0043025 [CC]neuronal cell bodyprobableGO:0005575, GO:0097458, GO:0044297, GO:0005623, GO:0044464
GO:0007268 [BP]synaptic transmissionprobableGO:0044700, GO:0019226, GO:0032501, GO:0044707, GO:0035637, GO:0050877, GO:0009987, GO:0008150, GO:0044763, GO:0023052, GO:0007267, GO:0007154, GO:0044699, GO:0003008
GO:0016021 [CC]integral to membraneprobableGO:0005575, GO:0044425, GO:0016020, GO:0031224
GO:0008021 [CC]synaptic vesicleprobableGO:0043227, GO:0005737, GO:0043231, GO:0016023, GO:0031410, GO:0044444, GO:0044464, GO:0031982, GO:0005623, GO:0031988, GO:0005575, GO:0043229, GO:0044456, GO:0045202, GO:0044424, GO:0005622, GO:0030135, GO:0043226, GO:0030136
GO:0033265 [MF]choline bindingprobableGO:0043169, GO:0043178, GO:0050997, GO:0043167, GO:0036094, GO:0003674, GO:0005488
GO:0015220 [MF]choline transmembrane transporter activityprobableGO:0022891, GO:0022892, GO:0005215, GO:0008324, GO:0022857, GO:0015075, GO:1901618, GO:0003674, GO:0015665

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2XQ2, chain A
Confidence level:very confident
Coverage over the Query: 3-25,43-442
View the alignment between query and template
View the model in PyMOL