Psyllid ID: psy14002

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450----
MVDVYGLAGIIIFYTLVLAIGVWAGTKQKNHGEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPLGYSLALVVGALLFVKPMREASYVTMLDPFQQAYGNRIGGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFAISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLLLAFGGIPWQCLSFPFAISNAQPYLKEPNMTIFSKVDWLGTVETKDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKLTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKVDLTPDEHPHYQVDLTGTAEKVQMSGLPDEHAHTIR
cccHHHHHHHHHHHHHHHHHHHHHEEEEcccccccEEEccccccHHHHHHHHHHHccccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHccccccHHHHHHHHcccccccccccc
cccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEccccccHHEEEEEHEHHHHHHHHHHcHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEcccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHcccccHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccEEEccccccccEEEEccccHHHHHccccccccccccc
MVDVYGLAGIIIFYTLVLAIGVWagtkqknhgeEEVMLAGRNVGLFVGVLTLTAtwvgggyiNATAEALFTTGLVWCQVPLGYSLALVVGALLFVKPMREASYVTMLDPFQQAYGNRIGGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFpfaisnaqpylkepnmtifskidwlgtvetkdyGLWIEGMLLLAfggipwqclsfpfaisnaqpylkepnmtifskvdwlgtvetkdyGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMvdwsaiptygknftaaesnsvLPLVLKELTPNWVAFFGLGAVTAAVMSSAdagilssssmftrniyklsfrpkltpnwvAFFGLGAVTAAVMSSAdagilssssmftrniyklsfrpkvdltpdehphyqvdltgtaekvqmsglpdehahtir
MVDVYGLAGIIIFYTLVLAIGVWAGTKQKNHGEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPLGYSLALVVGALLFVKPMREASYVTMLDPFQQAYGNRIGGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFAISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLLLAFGGIPWQCLSFPFAISNAQPYLKEPNMTIFSKVDWLGTVETKDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKLTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSfrpkvdltpdEHPHYQVDLTGTAEKVQMSGLPDEHAHTIR
MVDVYGLAGIIIFYTLVLAIGVWAGTKQKNHGEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPLGYSLALVVGALLFVKPMREASYVTMLDPFQQAYGNRIGGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFAISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLLLAFGGIPWQCLSFPFAISNAQPYLKEPNMTIFSKVDWLGTVETKDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMssadagilssssMFTRNIYKLSFRPKLTPNWVAFFGLGAVTAAVMssadagilssssMFTRNIYKLSFRPKVDLTPDEHPHYQVDLTGTAEKVQMSGLPDEHAHTIR
**DVYGLAGIIIFYTLVLAIGVWAGTKQKNHGEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPLGYSLALVVGALLFVKPMREASYVTMLDPFQQAYGNRIGGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFAISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLLLAFGGIPWQCLSFPFAISNAQPYLKEPNMTIFSKVDWLGTVETKDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKLTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKVDL*********************************
*VDVYGLAGIIIFYTLVLAIGVWAGTKQKNHGEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPLGYSLALVVGALLFVKPMREASYVTMLDPFQQAYGNRIGGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFAISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLLLAFGGIPWQCLSFPFAISNAQPYLKEPNMTIFSKVDWLGTVETKDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKLTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKVDLTPDEHPHYQVDLTGTAEKVQMSGLPD*******
MVDVYGLAGIIIFYTLVLAIGVWAGTKQKNHGEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPLGYSLALVVGALLFVKPMREASYVTMLDPFQQAYGNRIGGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFAISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLLLAFGGIPWQCLSFPFAISNAQPYLKEPNMTIFSKVDWLGTVETKDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKLTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKVDLTPDEHPHYQVDLTGTAEKVQM************
MVDVYGLAGIIIFYTLVLAIGVWAGTKQKNHGEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPLGYSLALVVGALLFVKPMREASYVTMLDPFQQAYGNRIGGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFAISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLLLAFGGIPWQCLSFPFAISNAQPYLKEPNMTIFSKVDWLGTVETKDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKLTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKVDLTPDEHPHYQVDLTGTAEKVQMS***********
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MVDVYGLAGIIIFYTLVLAIGVWAGTKQKNHGEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPLGYSLALVVGALLFVKPMREASYVTMLDPFQQAYGNRIGGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFAISNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLLLAFGGIPWQCLSFPFAISNAQPYLKEPNMTIFSKVDWLGTVETKDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKLTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKVDLTPDEHPHYQVDLTGTAEKVQMSGLPDEHAHTIR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query454 2.2.26 [Sep-21-2011]
O02228 576 High-affinity choline tra yes N/A 0.779 0.614 0.459 3e-83
Q9VE46 614 High-affinity choline tra yes N/A 0.784 0.579 0.432 1e-81
Q8BGY9 580 High affinity choline tra yes N/A 0.762 0.596 0.457 9e-81
Q9JMD7 580 High affinity choline tra yes N/A 0.759 0.594 0.458 2e-80
Q9GZV3 580 High affinity choline tra yes N/A 0.777 0.608 0.423 4e-75
Q8UWF0 584 High-affinity choline tra N/A N/A 0.764 0.594 0.401 3e-74
>sp|O02228|SC5A7_CAEEL High-affinity choline transporter 1 OS=Caenorhabditis elegans GN=cho-1 PE=2 SV=2 Back     alignment and function desciption
 Score =  309 bits (791), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 180/392 (45%), Positives = 231/392 (58%), Gaps = 38/392 (9%)

Query: 1   MVDVYGLAGIIIFYTLVLAIGVWAGTKQKNHGE---------EEVMLAGRNVGLFVGVLT 51
           M D+ G+  I+ FY L+L +G+WAG K K+  E         EEVMLAGRN+G  VG+ T
Sbjct: 1   MADLLGIVAIVFFYVLILVVGIWAGRKSKSSKELESEAGAATEEVMLAGRNIGTLVGIFT 60

Query: 52  LTATWVGGGYINATAEALFTTGLVWCQVPLGYSLALVVGALLFVKPMREASYVTMLDPFQ 111
           +TATWVGG YIN TAEAL+  GL+ CQ P+GY+++LV+G LLF K MRE  Y+TMLDPFQ
Sbjct: 61  MTATWVGGAYINGTAEALYNGGLLGCQAPVGYAISLVMGGLLFAKKMREEGYITMLDPFQ 120

Query: 112 QAYGNRIGGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFAIS-NAQPYLKEPNMTI 170
             YG RIGGL+++PAL G+ FW A++LS+LG+      LS    I  NA   L       
Sbjct: 121 HKYGQRIGGLMYVPALLGETFWTAAILSALGAT-----LSVILGIDMNASVTLSACIAVF 175

Query: 171 FSKIDWLGTVETKDYGLWIEGMLLLAFGGIPWQCLSFPFAISNAQPYLKEPNMTIFSKVD 230
           ++       V   D        L   F G+ W C+        A+   +          D
Sbjct: 176 YTFTGGYYAVAYTDVV-----QLFCIFVGL-WVCVPAAMVHDGAKDISRNAG-------D 222

Query: 231 WLGTVET-KDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSMAI 289
           W+G +   K+  LWI+ MLLL FGGIPWQ YFQRVLS ++   A  LS ++ + C  MAI
Sbjct: 223 WIGEIGGFKETSLWIDCMLLLVFGGIPWQVYFQRVLSSKTAHGAQTLSFVAGVGCILMAI 282

Query: 290 PAGAFGIIARMVDWSAIPTYG--KNFTAAES------NSVLPLVLKELTPNWVAFFGLGA 341
           P    G IAR  DW  +  Y    N T  ES      N V+PLV + LTP WVAF GLGA
Sbjct: 283 PPALIGAIARNTDWR-MTDYSPWNNGTKVESIPPDKRNMVVPLVFQYLTPRWVAFIGLGA 341

Query: 342 VTAAVMSSADAGILSSSSMFTRNIYKLSFRPK 373
           V+AAVMSSAD+ +LS++SMF  NI+KL+ RP 
Sbjct: 342 VSAAVMSSADSSVLSAASMFAHNIWKLTIRPH 373
Imports choline from the extracellular space to the neuron with high affinity. Choline uptake is the rate-limiting step in acetylcholine synthesis. Sodium ion and chloride ion dependent.
Caenorhabditis elegans (taxid: 6239)
>sp|Q9VE46|SC5A7_DROME High-affinity choline transporter 1 OS=Drosophila melanogaster GN=CG7708 PE=2 SV=2 Back     alignment and function description
>sp|Q8BGY9|SC5A7_MOUSE High affinity choline transporter 1 OS=Mus musculus GN=Slc5a7 PE=1 SV=1 Back     alignment and function description
>sp|Q9JMD7|SC5A7_RAT High affinity choline transporter 1 OS=Rattus norvegicus GN=Slc5a7 PE=2 SV=1 Back     alignment and function description
>sp|Q9GZV3|SC5A7_HUMAN High affinity choline transporter 1 OS=Homo sapiens GN=SLC5A7 PE=1 SV=1 Back     alignment and function description
>sp|Q8UWF0|SC5A7_TORMA High-affinity choline transporter 1 OS=Torpedo marmorata GN=CHT1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query454
307209307 837 High-affinity choline transporter 1 [Har 0.795 0.431 0.498 9e-97
332027966 891 High-affinity choline transporter 1 [Acr 0.817 0.416 0.475 1e-96
383859820 906 PREDICTED: high-affinity choline transpo 0.795 0.398 0.480 6e-96
380025224 923 PREDICTED: high-affinity choline transpo 0.795 0.391 0.472 2e-91
350416697 806 PREDICTED: high-affinity choline transpo 0.775 0.436 0.464 1e-86
340722300 814 PREDICTED: high-affinity choline transpo 0.779 0.434 0.434 1e-86
340722302 806 PREDICTED: high-affinity choline transpo 0.775 0.436 0.464 1e-86
321474987 632 hypothetical protein DAPPUDRAFT_98433 [D 0.797 0.572 0.458 9e-86
393910079 625 high-affinity choline transporter 1 [Loa 0.784 0.569 0.462 2e-84
242023364 604 High-affinity choline transporter, putat 0.779 0.586 0.470 3e-84
>gi|307209307|gb|EFN86392.1| High-affinity choline transporter 1 [Harpegnathos saltator] Back     alignment and taxonomy information
 Score =  360 bits (924), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 192/385 (49%), Positives = 256/385 (66%), Gaps = 24/385 (6%)

Query: 2   VDVYGLAGIIIFYTLVLAIGVWAGTKQKN---HGEEEVMLAGRNVGLFVGVLTLTATWVG 58
           V V G+ G+I+FY  VL +GVWA   ++     G++++MLA R +G  +GV TL ATWVG
Sbjct: 34  VYVTGVIGVIVFYVAVLGVGVWAAAFKRRKAAQGQDDMMLANRGLGPLLGVFTLVATWVG 93

Query: 59  GGYINATAEALFTTGLVWCQVPLGYSLALVVGALLFVKPMREASYVTMLDPFQQAYGNRI 118
           G ++N TAEA+FT GL WCQVP+GYSL+L+ GA+LFV+PMR+A YVTMLDPFQ+ YG  +
Sbjct: 94  GAFVNGTAEAMFTKGLAWCQVPIGYSLSLLFGAMLFVRPMRKAEYVTMLDPFQERYGAGV 153

Query: 119 GGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFAISNAQPYLKEPNMTIFSKIDWLG 178
           GGLLFLPALCGD+FW  +VL +LGS +  +    P     A   L      I++    L 
Sbjct: 154 GGLLFLPALCGDLFWCGAVLRALGSSLAVVAGVDPNISVCASALLA----AIYTVFGGLY 209

Query: 179 TVETKDYGLWIEGMLLLAFGGIPWQCLSFPFAISNAQPYLK-EPNMTIFSKVDWLGTVET 237
           +V   D    +  +L LA        ++ PF+I    P +  E N+ +    DWLG +  
Sbjct: 210 SVACTDALQLLCILLGLA--------IAAPFSI--MHPAVSFEKNLALR---DWLGQIRN 256

Query: 238 KDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAFGII 297
           +D G+W++GMLLL FGGIPWQ YFQR+LS+RST  A  LS +S   C  +AIP+   G++
Sbjct: 257 EDLGVWVDGMLLLVFGGIPWQGYFQRILSIRSTNVATTLSIVSMFGCMILAIPSALIGVV 316

Query: 298 ARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSS 357
           AR  DWS IP Y K F+  + N+ LP+VL+ LTP WV+F GLGA++AAVMSSAD+ IL+S
Sbjct: 317 ARATDWSLIPNYNKTFSTDDGNAALPMVLRYLTPQWVSFVGLGAISAAVMSSADSSILAS 376

Query: 358 SSMFTRNIYKLSFRPKLTP---NWV 379
           SSMFTRN+YKL+ RPK +    NWV
Sbjct: 377 SSMFTRNVYKLTIRPKASERELNWV 401

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|332027966|gb|EGI68017.1| High-affinity choline transporter 1 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|383859820|ref|XP_003705390.1| PREDICTED: high-affinity choline transporter 1-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|380025224|ref|XP_003696377.1| PREDICTED: high-affinity choline transporter 1-like [Apis florea] Back     alignment and taxonomy information
>gi|350416697|ref|XP_003491059.1| PREDICTED: high-affinity choline transporter 1-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340722300|ref|XP_003399545.1| PREDICTED: high-affinity choline transporter 1-like isoform 1 [Bombus terrestris] Back     alignment and taxonomy information
>gi|340722302|ref|XP_003399546.1| PREDICTED: high-affinity choline transporter 1-like isoform 2 [Bombus terrestris] Back     alignment and taxonomy information
>gi|321474987|gb|EFX85951.1| hypothetical protein DAPPUDRAFT_98433 [Daphnia pulex] Back     alignment and taxonomy information
>gi|393910079|gb|EJD75725.1| high-affinity choline transporter 1 [Loa loa] Back     alignment and taxonomy information
>gi|242023364|ref|XP_002432104.1| High-affinity choline transporter, putative [Pediculus humanus corporis] gi|212517478|gb|EEB19366.1| High-affinity choline transporter, putative [Pediculus humanus corporis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query454
FB|FBgn0038641 614 CG7708 [Drosophila melanogaste 0.442 0.327 0.488 2.7e-86
UNIPROTKB|Q9GZV3 580 SLC5A7 "High affinity choline 0.823 0.644 0.432 2.1e-77
ZFIN|ZDB-GENE-090313-273 595 si:dkey-24h22.4 "si:dkey-24h22 0.828 0.631 0.427 3.4e-77
UNIPROTKB|F1P4Q0 578 SLC5A7 "Uncharacterized protei 0.823 0.647 0.430 3.9e-76
RGD|69270 580 Slc5a7 "solute carrier family 0.823 0.644 0.430 3.9e-76
UNIPROTKB|Q8UWF0 584 CHT1 "High-affinity choline tr 0.821 0.638 0.424 5e-76
MGI|MGI:1927126 580 Slc5a7 "solute carrier family 0.825 0.646 0.426 5e-76
UNIPROTKB|Q2KI26 580 SLC5A7 "Solute carrier family 0.823 0.644 0.422 8.1e-76
UNIPROTKB|F1SU25 579 SLC5A7 "Uncharacterized protei 0.823 0.645 0.418 2.1e-75
UNIPROTKB|E2RAJ0 578 SLC5A7 "Uncharacterized protei 0.821 0.645 0.427 4.5e-75
FB|FBgn0038641 CG7708 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 534 (193.0 bits), Expect = 2.7e-86, Sum P(2) = 2.7e-86
 Identities = 105/215 (48%), Positives = 146/215 (67%)

Query:     1 MVDVYGLAGIIIFYTLVLAIGVWAGTKQK--NHGEEEVMLAGRNVGLFVGVLTLTATWVG 58
             M+++ G+  I++FY L+L +G+WAG K++  N  EEEVMLAGR++GLFVG+ T+TATWVG
Sbjct:     1 MINIAGVVSIVLFYLLILVVGIWAGRKKQSGNDSEEEVMLAGRSIGLFVGIFTMTATWVG 60

Query:    59 GGYINATAEALFTTGLVWCQVPLGYSLALVVGALLFVKPMREASYVTMLDPFQQAYGNRI 118
             GGYIN TAEA++T+GLVWCQ P GY+L+LV G + F  PMR+  Y+TMLDP Q ++G R+
Sbjct:    61 GGYINGTAEAIYTSGLVWCQAPFGYALSLVFGGIFFANPMRKQGYITMLDPLQDSFGERM 120

Query:   119 GGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFAISNAQPYLKEPNMTIFSKIDWLG 178
             GGLLFLPALCG+VFW A +L++LG+      LS    + +    +    + IF  +   G
Sbjct:   121 GGLLFLPALCGEVFWAAGILAALGAT-----LSVIIDMDHRTSVILSSCIAIFYTL--FG 173

Query:   179 TVETKDYGLWIEGMLLLAFGGIPWQCLSFPFAISN 213
              + +  Y   I+  L   F G+ W C+  PFA SN
Sbjct:   174 GLYSVAYTDVIQ--LFCIFIGL-WMCI--PFAWSN 203
GO:0005298 "proline:sodium symporter activity" evidence=ISS
GO:0008292 "acetylcholine biosynthetic process" evidence=ISS
GO:0016021 "integral to membrane" evidence=ISS
GO:0015220 "choline transmembrane transporter activity" evidence=ISS
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS
GO:0003333 "amino acid transmembrane transport" evidence=ISS
UNIPROTKB|Q9GZV3 SLC5A7 "High affinity choline transporter 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-090313-273 si:dkey-24h22.4 "si:dkey-24h22.4" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1P4Q0 SLC5A7 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|69270 Slc5a7 "solute carrier family 5 (choline transporter), member 7" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q8UWF0 CHT1 "High-affinity choline transporter 1" [Torpedo marmorata (taxid:7788)] Back     alignment and assigned GO terms
MGI|MGI:1927126 Slc5a7 "solute carrier family 5 (choline transporter), member 7" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KI26 SLC5A7 "Solute carrier family 5 (Choline transporter), member 7" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SU25 SLC5A7 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2RAJ0 SLC5A7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O02228SC5A7_CAEELNo assigned EC number0.45910.77970.6145yesN/A
Q9GZV3SC5A7_HUMANNo assigned EC number0.42350.77750.6086yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query454
cd11474464 cd11474, SLC5sbd_CHT, Na(+)- and Cl(-)-dependent c 1e-101
cd10322455 cd10322, SLC5sbd, Solute carrier 5 family, sodium/ 4e-33
COG0591493 COG0591, PutP, Na+/proline symporter [Amino acid t 1e-25
TIGR00813407 TIGR00813, sss, transporter, SSS family 1e-14
pfam00474406 pfam00474, SSF, Sodium:solute symporter family 3e-12
cd11475464 cd11475, SLC5sbd_PutP, Na(+)/proline cotransporter 6e-12
cd11476493 cd11476, SLC5sbd_DUR3, Na(+)/urea-polyamine cotran 5e-08
cd10327472 cd10327, SLC5sbd_PanF, Na(+)/pantothenate cotransp 3e-06
cd11477495 cd11477, SLC5sbd_u1, Uncharacterized bacterial sol 2e-05
TIGR02119471 TIGR02119, panF, sodium/pantothenate symporter 3e-05
cd11475464 cd11475, SLC5sbd_PutP, Na(+)/proline cotransporter 4e-05
cd11479454 cd11479, SLC5sbd_u3, Uncharacterized bacterial sol 4e-05
cd11479454 cd11479, SLC5sbd_u3, Uncharacterized bacterial sol 1e-04
PRK09442483 PRK09442, panF, sodium/panthothenate symporter; Pr 2e-04
cd10327472 cd10327, SLC5sbd_PanF, Na(+)/pantothenate cotransp 3e-04
cd11478495 cd11478, SLC5sbd_u2, Uncharacterized bacterial sol 4e-04
PRK09442483 PRK09442, panF, sodium/panthothenate symporter; Pr 6e-04
pfam00474406 pfam00474, SSF, Sodium:solute symporter family 8e-04
TIGR00813407 TIGR00813, sss, transporter, SSS family 0.001
COG4145473 COG4145, PanF, Na+/panthothenate symporter [Coenzy 0.001
cd10327472 cd10327, SLC5sbd_PanF, Na(+)/pantothenate cotransp 0.002
TIGR02119471 TIGR02119, panF, sodium/pantothenate symporter 0.002
TIGR02121487 TIGR02121, Na_Pro_sym, sodium/proline symporter 0.002
COG4145473 COG4145, PanF, Na+/panthothenate symporter [Coenzy 0.004
>gnl|CDD|212044 cd11474, SLC5sbd_CHT, Na(+)- and Cl(-)-dependent choline cotransporter CHT and related proteins; solute-binding domain Back     alignment and domain information 
 Score =  310 bits (798), Expect = e-101
 Identities = 138/411 (33%), Positives = 201/411 (48%), Gaps = 64/411 (15%)

Query: 7   LAGIIIFYTLVLAIGVWAGTKQKNHGEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATA 66
           L GII++Y L+L IG+WA  + KN   E+ ++AGR++ L VG  TL ATW GG  I   A
Sbjct: 1   LIGIILYYLLILGIGLWASRRVKN--SEDFLVAGRSLPLPVGTFTLFATWFGGETILGAA 58

Query: 67  EALFTTGLVW-CQVPLGYSLALVVGALLFVKPMREASYVTMLDPFQQAYGNRIGGLLFLP 125
           E  +  GL    Q P GY+L L++G L F KPMR    +T+ D F+Q YG R+  LL +P
Sbjct: 59  ETFYEEGLGGVAQDPFGYALCLILGGLFFAKPMRRMGLLTLGDFFRQRYGRRVEVLLSIP 118

Query: 126 ALCGDVFWIASVLSSLGSVVDTL---------CLSFPFAISNAQPYLKEPNMTIFSKIDW 176
           A+   + W+A+ L +LG V+  +          +S    +            T+F     
Sbjct: 119 AVPSYLGWVAAQLVALGLVLSVILGLPVTLGILISAAIVLI----------YTLFG---- 164

Query: 177 LGTVETKDYGLW------IEGMLLLAFGGIPWQCLSFPFAISNA---QPYLKEPNMTIFS 227
                    G+W      +  ++++  G +    L  PF ++N               F 
Sbjct: 165 ---------GMWSVAYTDVVQLIVIFIGLL----LLVPFVLTNPGGVDASAAAAGKLRF- 210

Query: 228 KVDWLGTVETKDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSM 287
              WLGT    D+ +WI+  L L  G IP Q  FQRVLS +S K A  LS L+       
Sbjct: 211 -FPWLGTKP-SDWLIWIDAWLTLGLGSIPQQDVFQRVLSAKSEKTAQRLSLLAGFGYLLF 268

Query: 288 AIPAGAFGIIARMVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVM 347
           AIP    G+ A  +D        ++    ++  +LP++L+ LTP WV    LGA+ +A+M
Sbjct: 269 AIPPLLIGLAAASIDPDLTSYGLED----DAQLILPILLQYLTPLWVQVLFLGALLSAIM 324

Query: 348 SSADAGILSSSSMFTRNIYKLSFRPKLTP---NWVA-----FFGLGAVTAA 390
           S+AD+ +L+ SS+F+ NIYK  FRPK +     WV       FG  A   A
Sbjct: 325 STADSALLAPSSVFSENIYKP-FRPKASDRELLWVMRISVVVFGAIATLLA 374

Na+/choline co-transport by CHT is Cl- dependent. Human CHT (also called CHT1) is encoded by the SLC5A7 gene, and is expressed in the central nervous system. hCHT1-mediated choline uptake may be the rate-limiting step in acetylcholine synthesis, and essential for cholinergic transmission. Changes in this choline uptake in cortical neurons may contribute to Alzheimer's dementia. This subfamily belongs to the solute carrier 5 (SLC5) transporter family. Length = 464
>gnl|CDD|212032 cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose transporters and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|223664 COG0591, PutP, Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>gnl|CDD|233138 TIGR00813, sss, transporter, SSS family Back     alignment and domain information
>gnl|CDD|109527 pfam00474, SSF, Sodium:solute symporter family Back     alignment and domain information
>gnl|CDD|212045 cd11475, SLC5sbd_PutP, Na(+)/proline cotransporter PutP and related proteins; solute binding domain Back     alignment and domain information
>gnl|CDD|212046 cd11476, SLC5sbd_DUR3, Na(+)/urea-polyamine cotransporter DUR3, and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212037 cd10327, SLC5sbd_PanF, Na(+)/pantothenate cotransporters: PanF of Escherichia coli and related proteins; solute binding domain Back     alignment and domain information
>gnl|CDD|212047 cd11477, SLC5sbd_u1, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain Back     alignment and domain information
>gnl|CDD|131174 TIGR02119, panF, sodium/pantothenate symporter Back     alignment and domain information
>gnl|CDD|212045 cd11475, SLC5sbd_PutP, Na(+)/proline cotransporter PutP and related proteins; solute binding domain Back     alignment and domain information
>gnl|CDD|212049 cd11479, SLC5sbd_u3, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain Back     alignment and domain information
>gnl|CDD|212049 cd11479, SLC5sbd_u3, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain Back     alignment and domain information
>gnl|CDD|236519 PRK09442, panF, sodium/panthothenate symporter; Provisional Back     alignment and domain information
>gnl|CDD|212037 cd10327, SLC5sbd_PanF, Na(+)/pantothenate cotransporters: PanF of Escherichia coli and related proteins; solute binding domain Back     alignment and domain information
>gnl|CDD|212048 cd11478, SLC5sbd_u2, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain Back     alignment and domain information
>gnl|CDD|236519 PRK09442, panF, sodium/panthothenate symporter; Provisional Back     alignment and domain information
>gnl|CDD|109527 pfam00474, SSF, Sodium:solute symporter family Back     alignment and domain information
>gnl|CDD|233138 TIGR00813, sss, transporter, SSS family Back     alignment and domain information
>gnl|CDD|226625 COG4145, PanF, Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|212037 cd10327, SLC5sbd_PanF, Na(+)/pantothenate cotransporters: PanF of Escherichia coli and related proteins; solute binding domain Back     alignment and domain information
>gnl|CDD|131174 TIGR02119, panF, sodium/pantothenate symporter Back     alignment and domain information
>gnl|CDD|233735 TIGR02121, Na_Pro_sym, sodium/proline symporter Back     alignment and domain information
>gnl|CDD|226625 COG4145, PanF, Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 454
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 100.0
PRK09442483 panF sodium/panthothenate symporter; Provisional 100.0
PRK15419502 proline:sodium symporter PutP; Provisional 100.0
PRK12488549 acetate permease; Provisional 100.0
PRK09395551 actP acetate permease; Provisional 100.0
PRK10484523 putative transporter; Provisional 100.0
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 100.0
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 100.0
TIGR03648552 Na_symport_lg probable sodium:solute symporter, VC 100.0
COG0591493 PutP Na+/proline symporter [Amino acid transport a 100.0
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 100.0
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 100.0
TIGR00813407 sss transporter, SSS family. have different number 100.0
COG4147529 DhlC Predicted symporter [General function predict 100.0
KOG3761|consensus 591 100.0
KOG2349|consensus 585 100.0
COG4146 571 Predicted symporter [General function prediction o 100.0
KOG2348|consensus 667 99.94
COG3949349 Uncharacterized membrane protein [Function unknown 99.21
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 98.79
TIGR00909429 2A0306 amino acid transporter. 98.69
TIGR00814397 stp serine transporter. The HAAAP family includes 98.65
PRK00701439 manganese transport protein MntH; Reviewed 98.64
PF01566358 Nramp: Natural resistance-associated macrophage pr 98.59
PF03845320 Spore_permease: Spore germination protein; InterPr 98.46
TIGR00837381 araaP aromatic amino acid transport protein. aroma 98.43
PRK10483414 tryptophan permease; Provisional 98.43
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 98.42
TIGR00912359 2A0309 spore germination protein (amino acid perme 98.41
TIGR01197390 nramp NRAMP (natural resistance-associated macroph 98.41
PRK15132403 tyrosine transporter TyrP; Provisional 98.39
PRK10238456 aromatic amino acid transporter; Provisional 98.39
PRK10249458 phenylalanine transporter; Provisional 98.38
TIGR00908442 2A0305 ethanolamine permease. The three genes used 98.37
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 98.36
PRK15049499 L-asparagine permease; Provisional 98.33
PRK10655438 potE putrescine transporter; Provisional 98.32
PRK10644445 arginine:agmatin antiporter; Provisional 98.29
PRK11017404 codB cytosine permease; Provisional 98.29
PRK11387471 S-methylmethionine transporter; Provisional 98.28
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 98.28
PRK11021410 putative transporter; Provisional 98.27
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 98.27
PRK09664415 tryptophan permease TnaB; Provisional 98.22
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 98.21
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 98.2
PRK13629443 threonine/serine transporter TdcC; Provisional 98.17
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 98.17
PRK10580457 proY putative proline-specific permease; Provision 98.16
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.1
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 98.1
TIGR00906 557 2A0303 cationic amino acid transport permease. 98.08
TIGR00913478 2A0310 amino acid permease (yeast). 98.07
PRK10746461 putative transport protein YifK; Provisional 98.06
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 98.04
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 98.02
PRK10836489 lysine transporter; Provisional 97.98
PRK10197446 gamma-aminobutyrate transporter; Provisional 97.98
PRK11357445 frlA putative fructoselysine transporter; Provisio 97.97
PRK11375484 allantoin permease; Provisional 97.96
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 97.9
PRK15433439 branched-chain amino acid transport system 2 carri 97.88
COG0814415 SdaC Amino acid permeases [Amino acid transport an 97.72
COG1457442 CodB Purine-cytosine permease and related proteins 97.7
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 97.68
TIGR00911501 2A0308 L-type amino acid transporter. 97.63
TIGR00835425 agcS amino acid carrier protein. Members of the AG 97.33
PF02028485 BCCT: BCCT family transporter; InterPro: IPR000060 97.29
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 97.27
TIGR00930 953 2a30 K-Cl cotransporter. 97.25
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 97.21
PTZ00206467 amino acid transporter; Provisional 97.06
PRK09950506 putative transporter; Provisional 97.05
TIGR00907482 2A0304 amino acid permease (GABA permease). 97.01
PRK09928 679 choline transport protein BetT; Provisional 96.9
TIGR00842453 bcct choline/carnitine/betaine transport. properti 96.78
COG0833541 LysP Amino acid transporters [Amino acid transport 96.76
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 96.68
PRK03356504 L-carnitine/gamma-butyrobetaine antiporter; Provis 96.67
COG0531466 PotE Amino acid transporters [Amino acid transport 96.61
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 96.6
COG1292537 BetT Choline-glycine betaine transporter [Cell env 96.55
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 96.47
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 96.42
KOG1303|consensus437 96.1
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 96.04
PLN03074473 auxin influx permease; Provisional 96.03
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 95.86
KOG1287|consensus479 95.52
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 95.49
COG0733439 Na+-dependent transporters of the SNF family [Gene 94.68
KOG1286|consensus 554 94.64
PRK15238496 inner membrane transporter YjeM; Provisional 94.16
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 89.48
COG0591493 PutP Na+/proline symporter [Amino acid transport a 86.07
KOG1289|consensus550 80.47
KOG1304|consensus449 80.34
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information 
Probab=100.00  E-value=1.1e-62  Score=518.20  Aligned_cols=417  Identities=17%  Similarity=0.176  Sum_probs=349.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhcccCCCCcccceecCcccChHHHHHHHHHHhhccccccccchHHHhcchhHHHHHHHHH
Q psy14002          5 YGLAGIIIFYTLVLAIGVWAGTKQKNHGEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQVPLGYS   84 (454)
Q Consensus         5 ~~~~i~~~y~~~~l~ig~~~~r~~~~~~~~df~~agrsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~~~~~~~   84 (454)
                      ++++++++|+++++++|+|.+||.|  |.|||++|||++|+|..++|+.||++|+++++|.++.+|++|+++.|+.+++.
T Consensus         2 ~~~~~~~~y~~~~l~iG~~~~r~~~--s~~df~lagr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~~~~~~g~~   79 (487)
T TIGR02121         2 EILITFGVYLIIMLLIGFYAYKKTT--NLSDYVLGGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSELWIAIGLT   79 (487)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccC--chHHHeeeCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHHHHHHHHHH
Confidence            4677889999999999999999988  89999999999999999999999999999999999999999999999888888


Q ss_pred             HHHHHHHHHHhhhhh-----ccCccCchHHHHHhhcCcc---hhHHHHHHHHHHHHHHHHHHHhhhHhhhccccccccCC
Q psy14002         85 LALVVGALLFVKPMR-----EASYVTMLDPFQQAYGNRI---GGLLFLPALCGDVFWIASVLSSLGSVVDTLCLSFPFAI  156 (454)
Q Consensus        85 l~~~~~~~~~~~~~r-----~~~~~T~~d~l~~Ryg~~~---~~~~~~~~~~~~~~~~~~ql~~~g~i~~~~~~~~~~gi  156 (454)
                      ++.++..++++||+|     |.|..|++|++|+|||++.   +.+.++..++..+.|++.|+.+.++++     +.++|+
T Consensus        80 ~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l-----~~~~gi  154 (487)
T TIGR02121        80 IGAYINWKFVAPRLRVYTEAAHNSITLPDFFENRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLF-----ESTFGL  154 (487)
T ss_pred             HHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhCc
Confidence            887777888999998     6789999999999999764   445566666677789999999999999     999999


Q ss_pred             CchhhhhhhhhhhhhhhchhcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccCCCcchhHhhhhh-cCccCCCC
Q psy14002        157 SNAQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLLLAFGGIPWQCLSFPFAISNAQPYLKEPNMTIFS-KVDWLGTV  235 (454)
Q Consensus       157 ~~~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~~~il~~~~~ii~~~~~~~~~~~~gg~~~l~~~~~~-~~~~~~~~  235 (454)
                      |++.++++..+++++|  |..||+|++++||++|++  +++++ .++   ++....++.||++++.+++++ +++..+..
T Consensus       155 ~~~~~iii~~~i~~~Y--t~~GGl~av~~TD~iQ~~--i~~~~-~~~---v~~~~~~~~GG~~~~~~~l~~~~~~~~~~~  226 (487)
T TIGR02121       155 DYKTGLLIGALIIVIY--TFFGGFLAVSWTDFVQGL--LMFFA-LVL---VPIVALFNLGGFGETLSAVAAINPHLLDMF  226 (487)
T ss_pred             cHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHH--HHHHH-HHH---HHHHHHHHcCCHHHHHHHHHhhCccccCCC
Confidence            9999999999999999  999999999999999964  67776 433   233334556899998887765 23333322


Q ss_pred             CCCchhhHHHHHHHHHHhhhcchhHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCccCc
Q psy14002        236 ETKDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMVDWSAIPTYGKNFTA  315 (454)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~p~~~qr~~aaks~~~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~p~~~~~~~~~~~~  315 (454)
                      ++.....+.+ .+.+.++...+|+++||++++||+|++||+..++..+..+..+...++|+.+..++|+.    ++ .+.
T Consensus       227 ~~~~~~~~~~-~~~~~~g~~~~p~~~qR~~aaks~k~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~----p~-~~~  300 (487)
T TIGR02121       227 KGASVIAIIS-LLAWGLGYFGQPHIIVRFMAIRSHKELPKARRIGMSWMILSLLGAIAVGLTGIAYFNKN----PH-VEL  300 (487)
T ss_pred             CCCCHHHHHH-HHHHHHHhccchHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----cc-ccC
Confidence            3222222333 24456677889999999999999999999999887766665566667788887766541    10 123


Q ss_pred             cCccchHHHHHHHhCchHHHHHHHHHHHHHHHhhhhhHHHhhhhhhhHHHHHhhcCCCCCCC------eehhHHHHHHHH
Q psy14002        316 AESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKLTPN------WVAFFGLGAVTA  389 (454)
Q Consensus       316 ~~~~~~~p~l~~~~lp~~l~gl~~~~~laA~mST~ds~l~a~ss~l~~Di~~~~~~~~~s~~------Ri~~~~i~i~a~  389 (454)
                      .++|.++|.++++.+|||+.|+++++++||.|||+||.+++.|+.++||+|++++|||.+||      |+.+++++++++
T Consensus       301 ~~~d~~~~~~~~~~~p~~l~gl~~a~ilaA~mST~~s~l~s~ss~~~~Diy~~~~~~~~s~~~~l~v~R~~~v~~~~~~~  380 (487)
T TIGR02121       301 VDRETIFIVLSQILFHPWIAGILLAAILAAIMSTISSQLLVSSSALTEDFYKAFFKREASQKELVMVGRLSVLVIAIIAI  380 (487)
T ss_pred             CCcchhHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999988      999999999999


Q ss_pred             HHHhcCCchHHHHHHHHHHhhhhhcccccccccccCCCCcccccccchhhhhc
Q psy14002        390 AVMSSADAGILSSSSMFTRNIYKLSFRPKVDLTPDEHPHYQVDLTGTAEKVQM  442 (454)
Q Consensus       390 ~la~~~~~~i~~l~~~~~~~~~~~~f~p~~~~~~~k~~~~~~~~~g~~~~~~~  442 (454)
                      .+++..+++++++..+++....+...|+.+.+.+|||.|.++.+.|...+...
T Consensus       381 ~~a~~~~~~i~~l~~~~~~~~~~~~~p~~llgl~w~r~t~~ga~~g~i~G~~~  433 (487)
T TIGR02121       381 ILAMNPNSSILNLVGYAWAGFGAAFGPVVLFSLYWKRMTRNGALAGMIIGAVT  433 (487)
T ss_pred             HHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            99998887888887777766555566667799999999999999888776554

This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>KOG3761|consensus Back     alignment and domain information
>KOG2349|consensus Back     alignment and domain information
>COG4146 Predicted symporter [General function prediction only] Back     alignment and domain information
>KOG2348|consensus Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>PRK09950 putative transporter; Provisional Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>PRK09928 choline transport protein BetT; Provisional Back     alignment and domain information
>TIGR00842 bcct choline/carnitine/betaine transport Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>KOG1303|consensus Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>KOG1287|consensus Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>KOG1286|consensus Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>KOG1289|consensus Back     alignment and domain information
>KOG1304|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query454
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 1e-15
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 5e-12
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Length = 593 Back     alignment and structure
 Score = 77.9 bits (192), Expect = 1e-15
 Identities = 68/416 (16%), Positives = 142/416 (34%), Gaps = 32/416 (7%)

Query: 10  IIIFYTLVLAIGVWAG--TKQKNHGEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAE 67
             I+  +++ +G+W     K      E+  LAG+++  +    +L A  +        + 
Sbjct: 16  FAIYVAIIIGVGLWVSRDKKGTQKSTEDYFLAGKSLPWWAVGASLIAANISAEQFIGMSG 75

Query: 68  ALFTTGLVWCQVPLGYSLALVVGALLFVKPMREASYVTMLDPFQQAYGNRIGGLLFLPAL 127
           + ++ GL         ++ L++    F+    E    T+ +  ++ +  ++  +L +  +
Sbjct: 76  SGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEKGIYTIPEFVEKRFNKKLKTILAVFWI 135

Query: 128 CGDVFWIASVLSSLGSVVDTLCLSFPFAISNAQPYLKEPNMTIFSKI-DWLGTVETKDY- 185
              +F   + +  LG +     L  P   S          + +F+ +    G +    + 
Sbjct: 136 SLYIFVNLTSVLYLGGLALETILGIPLMYSILG-------LALFALVYSIYGGLSAVVWT 188

Query: 186 -----------GLWIEGMLLLAFGGIPWQCLSFPFAISNAQPYLKEPNMTIFSKVDWLGT 234
                      G     M +   GG           +  A  + +        +   L  
Sbjct: 189 DVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPG 248

Query: 235 VETKDYGLWIEGMLLLAFGGIPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAF 294
           +     GLW+  +    F     Q   QR L+ +S   A      +A L   +       
Sbjct: 249 IAVLIGGLWVANLYYWGFN----QYIIQRTLAAKSVSEAQKGIVFAAFLALIVPFLVVLP 304

Query: 295 GIIAR------MVDWSAIPTYGKNFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMS 348
           GI A        +  S       N  +A +       L +  P  V      A+ AA++S
Sbjct: 305 GIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLTQFLPVGVKGVVFAALAAAIVS 364

Query: 349 SADAGILSSSSMFTRNIYKLSFRPKLTPNWVAFFGLGAVTAAVMSSADAGILSSSS 404
           S  + + S++++FT +IYK    P    + +   G  A   A++ +A    +    
Sbjct: 365 SLASMLNSTATIFTMDIYKEYISPDSGDHKLVNVGRTAAVVALIIAALIAPMLGGI 420
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Length = 530 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query454
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 100.0
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 100.0
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 99.07
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 98.96
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 98.58
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 97.32
2wsw_A509 BCCT family betaine/carnitine/choline transporter; 97.21
4ain_A539 Glycine betaine transporter BETP; membrane protein 95.92
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
Probab=100.00  E-value=2.3e-60  Score=510.44  Aligned_cols=427  Identities=14%  Similarity=0.115  Sum_probs=327.2

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHhhcccCC--CCcccceecCcccChHHHHHHHHHHhhccccccccchHHHhcchhHHHH
Q psy14002          2 VDVYGLAGIIIFYTLVLAIGVWAGTKQKN--HGEEEVMLAGRNVGLFVGVLTLTATWVGGGYINATAEALFTTGLVWCQV   79 (454)
Q Consensus         2 ~~~~~~~i~~~y~~~~l~ig~~~~r~~~~--~~~~df~~agrsl~~~~~~~s~~at~~sa~~~~G~~~~~y~~G~~~~~~   79 (454)
                      +|+.|++++++|+++++++|+|.+||+|+  +|.|||++|||++|+|+.++|+.||++|+++++|.++.+|++|+.+.++
T Consensus         8 ~~~~d~~i~~~yl~~~~~ig~~~~r~~~~~~~~~~dy~laGR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~   87 (593)
T 2xq2_A            8 LSFIDIMVFAIYVAIIIGVGLWVSRDKKGTQKSTEDYFLAGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASY   87 (593)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHTCC-------------------CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHhcCCCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHH
Confidence            68899999999999999999999888763  3689999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHHHHHHHHhhhhhccCccCchHHHHHhhcCcchhHHHHHHHH-HHHHHHHHHHHhhhHhhhccccccccCCCc
Q psy14002         80 PLGYSLALVVGALLFVKPMREASYVTMLDPFQQAYGNRIGGLLFLPALC-GDVFWIASVLSSLGSVVDTLCLSFPFAISN  158 (454)
Q Consensus        80 ~~~~~l~~~~~~~~~~~~~r~~~~~T~~d~l~~Ryg~~~~~~~~~~~~~-~~~~~~~~ql~~~g~i~~~~~~~~~~gi~~  158 (454)
                      .+++.++.++.++++.|++||.|.+|++|++|+|||++.|.+.+++.++ ..+.+++.|+++.+.++     +.++|+|+
T Consensus        88 ~~~~~~~~~~~~~~~~p~~~r~~~~T~~e~l~~Rfg~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l-----~~~~Gi~~  162 (593)
T 2xq2_A           88 EWMSAITLIIVGKYFLPIFIEKGIYTIPEFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLAL-----ETILGIPL  162 (593)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHTTCCSHHHHHHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH-----HHHHCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhcCccH
Confidence            8888888888889999999999999999999999999988888777664 45568999999999999     99999999


Q ss_pred             hhhhhhhhhhhhhhhchhcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccCCCcchhHhhhh---h-cCccCCC
Q psy14002        159 AQPYLKEPNMTIFSKIDWLGTVETKDYGLWIEGMLLLAFGGIPWQCLSFPFAISNAQPYLKEPNMTIF---S-KVDWLGT  234 (454)
Q Consensus       159 ~~~i~i~~~v~~~Y~~t~~GGl~av~~TD~iQ~~~~il~~~~~ii~~~~~~~~~~~~gg~~~l~~~~~---~-~~~~~~~  234 (454)
                      +.++++.++++++|  |..||+|+++|||++|++  +++++ .++   +++....+.||.+++.+...   + .++..+.
T Consensus       163 ~~~i~i~~~i~~~Y--t~~GGl~av~~TD~iQ~i--iml~~-~l~---v~~~~l~~~gg~~~~~~~~~~~~~~~~~~~~~  234 (593)
T 2xq2_A          163 MYSILGLALFALVY--SIYGGLSAVVWTDVIQVF--FLVLG-GFM---TTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEM  234 (593)
T ss_dssp             HHHHHHHHHHHHHH--HHTTC---CCHHHHHHHH--HHHHH-HHH---HHHHHHHHHHGGGHHHHHHHHHHHHCGGGSCS
T ss_pred             HHHHHHHHHHHHHH--HHhcchHHHHHHHHHHHH--HHHHH-HHH---HHHHHHHHcCCchhHHHHHHHHHhhChhhccc
Confidence            99999999999999  999999999999999964  77777 443   22333344466655443221   1 1222211


Q ss_pred             CCC-Cch----hhHHHHH----HHHHHhh-hcchhHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC
Q psy14002        235 VET-KDY----GLWIEGM----LLLAFGG-IPWQSYFQRVLSLRSTKAAYHLSTLSALLCFSMAIPAGAFGIIARMV-DW  303 (454)
Q Consensus       235 ~~~-~~~----~~~~~~~----~~~~~~~-~~~p~~~qr~~aaks~~~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~-~p  303 (454)
                      ..+ .+.    ..+.+..    ....+++ ..+|+++||++++||+|++||+.++++++..++.+...++|+.++.+ ++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~q~~~qR~laaks~k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~  314 (593)
T 2xq2_A          235 ILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQYIIQRTLAAKSVSEAQKGIVFAAFLALIVPFLVVLPGIAAYVITSD  314 (593)
T ss_dssp             SCCSSSGGGGTSCTTHHHHSTHHHHHHHHHTTTCSHHHHHHTTSCHHHHHHHHHHHHHHTTTHHHHHTHHHHHHHHHHTC
T ss_pred             ccCCCCcccccchHHHHHHHHHHHHHHHhhcCChHHHHHhheeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            111 100    0111111    1223333 46788999999999999999999999999888888778889998877 21


Q ss_pred             CCC-CccCC-----ccCccCccchHHHHHHHhCchHHHHHHHHHHHHHHHhhhhhHHHhhhhhhhHHHHHhhcCCCCCCC
Q psy14002        304 SAI-PTYGK-----NFTAAESNSVLPLVLKELTPNWVAFFGLGAVTAAVMSSADAGILSSSSMFTRNIYKLSFRPKLTPN  377 (454)
Q Consensus       304 ~~~-~~~~~-----~~~~~~~~~~~p~l~~~~lp~~l~gl~~~~~laA~mST~ds~l~a~ss~l~~Di~~~~~~~~~s~~  377 (454)
                      +.. +..+.     .++..++|+++|.++ +.+|+|+.|+++++++||+|||+||.+++.|+.+++|+|+|++|||++||
T Consensus       315 ~~~~~~~~~~~~~~~p~~~~~d~~~p~l~-~~lp~~l~gl~~a~llaA~mST~~s~l~a~st~~~~Diy~~~~~~~~s~~  393 (593)
T 2xq2_A          315 PQLMASLGDIAATNLPSAANADKAYPWLT-QFLPVGVKGVVFAALAAAIVSSLASMLNSTATIFTMDIYKEYISPDSGDH  393 (593)
T ss_dssp             HHHHHHHC-----CCCCSTBGGGHHHHHH-HTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTCSCCCHH
T ss_pred             ccccccccccccccCCCCCChhhHHHHHH-HHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHH
Confidence            100 00000     011247899999999 99999999999999999999999999999999999999999989999988


Q ss_pred             ------eehhHHHHHHHHHHHhc--CCchHHHHHHHHHHhhhhhcccccccccccCCCCcccccccchhhhhc
Q psy14002        378 ------WVAFFGLGAVTAAVMSS--ADAGILSSSSMFTRNIYKLSFRPKVDLTPDEHPHYQVDLTGTAEKVQM  442 (454)
Q Consensus       378 ------Ri~~~~i~i~a~~la~~--~~~~i~~l~~~~~~~~~~~~f~p~~~~~~~k~~~~~~~~~g~~~~~~~  442 (454)
                            |+.+++++++++.++..  ..++++++.....+....++++|++.+.+|||.|.+|.+.|...+...
T Consensus       394 ~~l~v~Ri~~v~~~~ia~~~a~~~~~~~~i~~~~~~~~g~~~~~~~~~~llglfwkr~~~~gA~~g~i~G~~~  466 (593)
T 2xq2_A          394 KLVNVGRTAAVVALIIAALIAPMLGGIGQCFQYIQEYTGLVSPGILAVFLLGLFWKKTTSKGAIIGVVASIPF  466 (593)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHGGGGGGCBCHHHHHHHHHTTTHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence                  88999999999999973  345788877776667777899999999999999999999988776543
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A* Back     alignment and structure
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00