Psyllid ID: psy14535

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-----
Protein Sequence
MEEGETERKKFYNLDRGGRTTMSIKPVYRPKIVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNGNARIRTEENE
Secondary Structure (PSIPRED)
ccccHHHHHHccccccccccEEEEccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccEEEEEEcHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHccccEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccEEEEccccccccEEEEccccEcccccccccEcccccccccccccHHHEccccccccccccccccHccccccccccEEEEEccHHHHHHHHHHcHHHHHHHHHHccHHHHHHHHHHHHHcccEEEccccEEEccccc
Coil and Loop (DISEMBL)
meegeterkkfynldrggrttmsikpvyrpkivKKRRKVFIRHQSDRYKKLHrswrkpkgidnrvrrrfkgqylmpnigygsakktrhmlpnHFLKVVVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLtngnarirteene
Flexible Loop (DISEMBL)
meegeterkkfynldrggrttmsikpvyrpkivkkrrkvfirhqsdrykklhrswrkpkgidnrvrrrfkgqylmpnIGYGSAKKTRHMLPNHFLKVVVHNVKELEVLMMQNRKYCAEIghavsskkrrdIVQRAQqlsirltngnarirteene
Low Complexity Region (SEG)
MEEGETERKKFYNLDRGGRTTMSikpvyrpkivkkrrkvfirHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNGNARIRTEENE
Disordered region (IsUnstruct)
*******************TTMSIKPVYRPKIVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHNVKELEVLMMQNRKYCAEIGHAV********************************
Disordered Region (DISOPRED)
****************G*RTTMSIKPVYRPKIVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNG**********
Disordered Region (DISEMBL)
MEEGETERKKFYNLDRGGRTTMSIKPVYRPKIVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNGNARIRTEENE
Disordered Region (DISPRO)
***************RGGRTTMSIKPVYRPKIVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNGNARIR*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEEGETERKKFYNLDRGGRTTMSIKPVYRPKIVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNGNARIRTEENE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	155	2.2.26 [Sep-21-2011]
Q962T1	134	60S ribosomal protein L32	N/A	N/A	0.864	1.0	0.805	2e-59
Q8WRF3	134	60S ribosomal protein L32	yes	N/A	0.864	1.0	0.798	5e-58
P84323	134	60S ribosomal protein L32	yes	N/A	0.864	1.0	0.768	2e-56
P84327	134	60S ribosomal protein L32	N/A	N/A	0.864	1.0	0.768	2e-56
P84326	134	60S ribosomal protein L32	N/A	N/A	0.864	1.0	0.768	2e-56
P84325	134	60S ribosomal protein L32	N/A	N/A	0.864	1.0	0.768	2e-56
P84324	134	60S ribosomal protein L32	N/A	N/A	0.864	1.0	0.768	2e-56
P84311	134	60S ribosomal protein L32	N/A	N/A	0.864	1.0	0.768	2e-56
P84313	134	60S ribosomal protein L32	N/A	N/A	0.864	1.0	0.768	2e-56
P84314	134	60S ribosomal protein L32	N/A	N/A	0.864	1.0	0.768	2e-56

>sp|Q962T1|RL32_SPOFR 60S ribosomal protein L32 OS=Spodoptera frugiperda GN=RpL32 PE=2 SV=1

 Score =  227 bits (579), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 108/134 (80%), Positives = 121/134 (90%)

Query: 22  MSIKPVYRPKIVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYG 81
           M+I+PVYRP IVKKR K FIRHQSDRY KL R+WRKP+GIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 60

Query: 82  SAKKTRHMLPNHFLKVVVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIR 141
           S KKTRHMLPN F KV+VHNV+ELE+LMMQNRKYCAEI H VSSKKR+ IV+RAQQLSIR
Sbjct: 61  SNKKTRHMLPNGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKTIVERAQQLSIR 120

Query: 142 LTNGNARIRTEENE 155
           +TN  AR+R++ENE
Sbjct: 121 VTNSAARLRSQENE 134

Spodoptera frugiperda (taxid: 7108)

>sp|Q8WRF3|RL32_APIME 60S ribosomal protein L32 OS=Apis mellifera GN=RpL32 PE=2 SV=1

 Score =  223 bits (567), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 107/134 (79%), Positives = 119/134 (88%)

Query: 22  MSIKPVYRPKIVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYG 81
           M+I+PVYRP IVKKR K FIRHQSDRY KL R+WRKPKGIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MAIRPVYRPTIVKKRTKKFIRHQSDRYSKLKRNWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 82  SAKKTRHMLPNHFLKVVVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIR 141
           S KKTRHMLP  F KV+VHNVKELEVLMMQNRK+CAEI H  SSKKR+ IV+RAQQLSIR
Sbjct: 61  SNKKTRHMLPTGFRKVLVHNVKELEVLMMQNRKFCAEIAHGGSSKKRKSIVERAQQLSIR 120

Query: 142 LTNGNARIRTEENE 155
           +T  +AR+R++ENE
Sbjct: 121 VTYASARLRSQENE 134

Apis mellifera (taxid: 7460)

>sp|P84323|RL32_DROPS 60S ribosomal protein L32 OS=Drosophila pseudoobscura pseudoobscura GN=RpL32 PE=3 SV=1

 Score =  217 bits (553), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 103/134 (76%), Positives = 117/134 (87%)

Query: 22  MSIKPVYRPKIVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYG 81
           M+I+P YRPKI+KKR K FIRHQSDRY KL   WRKPKGIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MTIRPAYRPKIIKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 82  SAKKTRHMLPNHFLKVVVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIR 141
           S K+TRHMLP  F K +VHNV+ELEVL+MQNR YC EI HAVSSKKR++IV+RA+QLSIR
Sbjct: 61  SNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHAVSSKKRKEIVERAKQLSIR 120

Query: 142 LTNGNARIRTEENE 155
           LTN N R+R++ENE
Sbjct: 121 LTNPNGRLRSQENE 134

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|P84327|RL32_DROPE 60S ribosomal protein L32 OS=Drosophila persimilis GN=RpL32 PE=3 SV=1

 Score =  217 bits (553), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 103/134 (76%), Positives = 117/134 (87%)

Query: 22  MSIKPVYRPKIVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYG 81
           M+I+P YRPKI+KKR K FIRHQSDRY KL   WRKPKGIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MTIRPAYRPKIIKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 82  SAKKTRHMLPNHFLKVVVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIR 141
           S K+TRHMLP  F K +VHNV+ELEVL+MQNR YC EI HAVSSKKR++IV+RA+QLSIR
Sbjct: 61  SNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHAVSSKKRKEIVERAKQLSIR 120

Query: 142 LTNGNARIRTEENE 155
           LTN N R+R++ENE
Sbjct: 121 LTNPNGRLRSQENE 134

Drosophila persimilis (taxid: 7234)

>sp|P84326|RL32_DROMI 60S ribosomal protein L32 OS=Drosophila miranda GN=RpL32 PE=3 SV=1

 Score =  217 bits (553), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 103/134 (76%), Positives = 117/134 (87%)

Query: 22  MSIKPVYRPKIVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYG 81
           M+I+P YRPKI+KKR K FIRHQSDRY KL   WRKPKGIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MTIRPAYRPKIIKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 82  SAKKTRHMLPNHFLKVVVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIR 141
           S K+TRHMLP  F K +VHNV+ELEVL+MQNR YC EI HAVSSKKR++IV+RA+QLSIR
Sbjct: 61  SNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHAVSSKKRKEIVERAKQLSIR 120

Query: 142 LTNGNARIRTEENE 155
           LTN N R+R++ENE
Sbjct: 121 LTNPNGRLRSQENE 134

Drosophila miranda (taxid: 7229)

>sp|P84325|RL32_DROAZ 60S ribosomal protein L32 OS=Drosophila azteca GN=RpL32 PE=3 SV=1

 Score =  217 bits (553), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 103/134 (76%), Positives = 117/134 (87%)

Query: 22  MSIKPVYRPKIVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYG 81
           M+I+P YRPKI+KKR K FIRHQSDRY KL   WRKPKGIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MTIRPAYRPKIIKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 82  SAKKTRHMLPNHFLKVVVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIR 141
           S K+TRHMLP  F K +VHNV+ELEVL+MQNR YC EI HAVSSKKR++IV+RA+QLSIR
Sbjct: 61  SNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHAVSSKKRKEIVERAKQLSIR 120

Query: 142 LTNGNARIRTEENE 155
           LTN N R+R++ENE
Sbjct: 121 LTNPNGRLRSQENE 134

Drosophila azteca (taxid: 7249)

>sp|P84324|RL32_DROAI 60S ribosomal protein L32 OS=Drosophila affinis GN=RpL32 PE=3 SV=1

 Score =  217 bits (553), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 103/134 (76%), Positives = 117/134 (87%)

Query: 22  MSIKPVYRPKIVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYG 81
           M+I+P YRPKI+KKR K FIRHQSDRY KL   WRKPKGIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MTIRPAYRPKIIKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 82  SAKKTRHMLPNHFLKVVVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIR 141
           S K+TRHMLP  F K +VHNV+ELEVL+MQNR YC EI HAVSSKKR++IV+RA+QLSIR
Sbjct: 61  SNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHAVSSKKRKEIVERAKQLSIR 120

Query: 142 LTNGNARIRTEENE 155
           LTN N R+R++ENE
Sbjct: 121 LTNPNGRLRSQENE 134

Drosophila affinis (taxid: 7246)

>sp|P84311|RL32_DROSU 60S ribosomal protein L32 OS=Drosophila subobscura GN=RpL32 PE=3 SV=1

 Score =  217 bits (553), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 103/134 (76%), Positives = 117/134 (87%)

Query: 22  MSIKPVYRPKIVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYG 81
           M+I+P YRPKI+KKR K FIRHQSDRY KL   WRKPKGIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MTIRPAYRPKIIKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 82  SAKKTRHMLPNHFLKVVVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIR 141
           S K+TRHMLP  F K +VHNV+ELEVL+MQNR YC EI HAVSSKKR++IV+RA+QLSIR
Sbjct: 61  SNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRIYCGEIAHAVSSKKRKEIVERAKQLSIR 120

Query: 142 LTNGNARIRTEENE 155
           LTN N R+R++ENE
Sbjct: 121 LTNPNGRLRSQENE 134

Drosophila subobscura (taxid: 7241)

>sp|P84313|RL32_DROMD 60S ribosomal protein L32 OS=Drosophila madeirensis GN=RpL32 PE=3 SV=1

 Score =  217 bits (553), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 103/134 (76%), Positives = 117/134 (87%)

Query: 22  MSIKPVYRPKIVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYG 81
           M+I+P YRPKI+KKR K FIRHQSDRY KL   WRKPKGIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MTIRPAYRPKIIKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 82  SAKKTRHMLPNHFLKVVVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIR 141
           S K+TRHMLP  F K +VHNV+ELEVL+MQNR YC EI HAVSSKKR++IV+RA+QLSIR
Sbjct: 61  SNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRIYCGEIAHAVSSKKRKEIVERAKQLSIR 120

Query: 142 LTNGNARIRTEENE 155
           LTN N R+R++ENE
Sbjct: 121 LTNPNGRLRSQENE 134

Drosophila madeirensis (taxid: 30013)

>sp|P84314|RL32_DROGU 60S ribosomal protein L32 OS=Drosophila guanche GN=RpL32 PE=3 SV=1

 Score =  217 bits (553), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 103/134 (76%), Positives = 117/134 (87%)

Query: 22  MSIKPVYRPKIVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYG 81
           M+I+P YRPKI+KKR K FIRHQSDRY KL   WRKPKGIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MTIRPAYRPKIIKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 82  SAKKTRHMLPNHFLKVVVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIR 141
           S K+TRHMLP  F K +VHNV+ELEVL+MQNR YC EI HAVSSKKR++IV+RA+QLSIR
Sbjct: 61  SNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRIYCGEIAHAVSSKKRKEIVERAKQLSIR 120

Query: 142 LTNGNARIRTEENE 155
           LTN N R+R++ENE
Sbjct: 121 LTNPNGRLRSQENE 134

Drosophila guanche (taxid: 7266)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
110671486	134	putative ribosomal protein L32e [Diaphor	0.864	1.0	1.0	4e-72
66472210	134	ribosomal protein 49 [Athalia rosae]	0.864	1.0	0.843	8e-60
307181335	134	60S ribosomal protein L32 [Camponotus fl	0.864	1.0	0.835	9e-60
156551533	134	PREDICTED: 60S ribosomal protein L32 iso	0.864	1.0	0.835	2e-59
285027699	134	ribosomal protein L32 [Solenopsis invict	0.864	1.0	0.835	2e-59
307199477	134	60S ribosomal protein L32 [Harpegnathos	0.864	1.0	0.835	2e-59
340721129	134	PREDICTED: 60S ribosomal protein L32-lik	0.864	1.0	0.828	3e-59
292397874	134	ribosomal protein L32 isoform B [Nylande	0.864	1.0	0.835	3e-59
70909855	134	ribosomal protein L32e [Sphaerius sp. AP	0.864	1.0	0.828	3e-59
90820010	134	putative ribosomal protein 49 [Graphocep	0.864	1.0	0.835	3e-59

>gi|110671486|gb|ABG81994.1| putative ribosomal protein L32e [Diaphorina citri]

 Score =  275 bits (703), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 134/134 (100%), Positives = 134/134 (100%)

Query: 22  MSIKPVYRPKIVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYG 81
           MSIKPVYRPKIVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MSIKPVYRPKIVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 82  SAKKTRHMLPNHFLKVVVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIR 141
           SAKKTRHMLPNHFLKVVVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIR
Sbjct: 61  SAKKTRHMLPNHFLKVVVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIR 120

Query: 142 LTNGNARIRTEENE 155
           LTNGNARIRTEENE
Sbjct: 121 LTNGNARIRTEENE 134

Source: Diaphorina citri

Species: Diaphorina citri

Genus: Diaphorina

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66472210|dbj|BAD98920.1| ribosomal protein 49 [Athalia rosae]

 Score =  234 bits (598), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 113/134 (84%), Positives = 122/134 (91%)

Query: 22  MSIKPVYRPKIVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYG 81
           MSI+PVYRP IVKKR K FIRHQSDRY KL R+WRKPKGIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MSIRPVYRPTIVKKRTKKFIRHQSDRYDKLRRNWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 82  SAKKTRHMLPNHFLKVVVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIR 141
           S KKTRHMLP  F KV+VHNVKELEVLMMQNRK+CAEI HAVSSKKR+ IV+RAQQLSIR
Sbjct: 61  SNKKTRHMLPTGFRKVLVHNVKELEVLMMQNRKFCAEIAHAVSSKKRKAIVERAQQLSIR 120

Query: 142 LTNGNARIRTEENE 155
           +TN NAR+R+EENE
Sbjct: 121 VTNANARLRSEENE 134

Source: Athalia rosae

Species: Athalia rosae

Genus: Athalia

Family: Tenthredinidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307181335|gb|EFN68969.1| 60S ribosomal protein L32 [Camponotus floridanus]

 Score =  234 bits (597), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 112/134 (83%), Positives = 124/134 (92%)

Query: 22  MSIKPVYRPKIVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYG 81
           MSI+PVYRPKIVKKR K FIRHQSDRY KL R+WRKPKGIDNRVRRRFKGQYLMP+IGYG
Sbjct: 1   MSIRPVYRPKIVKKRTKKFIRHQSDRYDKLKRNWRKPKGIDNRVRRRFKGQYLMPSIGYG 60

Query: 82  SAKKTRHMLPNHFLKVVVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIR 141
           S+KKTRHMLP  F KV+VHNVKELEVLMMQNRK+CAEI HAVSSKKR+ IV+RAQQLSIR
Sbjct: 61  SSKKTRHMLPTGFRKVLVHNVKELEVLMMQNRKFCAEIAHAVSSKKRKAIVERAQQLSIR 120

Query: 142 LTNGNARIRTEENE 155
           +TN +AR+R+EENE
Sbjct: 121 VTNASARLRSEENE 134

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156551533|ref|XP_001601522.1| PREDICTED: 60S ribosomal protein L32 isoform 1 [Nasonia vitripennis]

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 112/134 (83%), Positives = 122/134 (91%)

Query: 22  MSIKPVYRPKIVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYG 81
           MSI+PVYRPKIVKKR K FIRHQSDRY KL R+WRKPKGIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MSIRPVYRPKIVKKRTKKFIRHQSDRYDKLKRNWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 82  SAKKTRHMLPNHFLKVVVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIR 141
           S +KTRHMLP  F KV+VHNVKELEVLMMQNRK+CAEI H VSSKKR+ IV+RAQQLSIR
Sbjct: 61  SNQKTRHMLPTGFRKVLVHNVKELEVLMMQNRKFCAEIAHGVSSKKRKTIVERAQQLSIR 120

Query: 142 LTNGNARIRTEENE 155
           +TN NAR+R+EENE
Sbjct: 121 VTNANARLRSEENE 134

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|285027699|gb|ADC34223.1| ribosomal protein L32 [Solenopsis invicta]

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 112/134 (83%), Positives = 123/134 (91%)

Query: 22  MSIKPVYRPKIVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYG 81
           MSI+PVYRPKIVKKR K FIRHQSDRY KL R+WRKPKGIDNRVRRRFKGQYLMP+IGYG
Sbjct: 1   MSIRPVYRPKIVKKRTKKFIRHQSDRYNKLKRNWRKPKGIDNRVRRRFKGQYLMPSIGYG 60

Query: 82  SAKKTRHMLPNHFLKVVVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIR 141
           S KKTRHMLP  F KV+VHNVKELEVLMMQNRK+CAEI HAVSSKKR+ IV+RAQQLSIR
Sbjct: 61  SNKKTRHMLPTGFRKVLVHNVKELEVLMMQNRKFCAEIAHAVSSKKRKSIVERAQQLSIR 120

Query: 142 LTNGNARIRTEENE 155
           +TN +AR+R+EENE
Sbjct: 121 VTNASARLRSEENE 134

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307199477|gb|EFN80090.1| 60S ribosomal protein L32 [Harpegnathos saltator]

 Score =  233 bits (593), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 112/134 (83%), Positives = 123/134 (91%)

Query: 22  MSIKPVYRPKIVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYG 81
           MSI+PVYRPKIVKKR K FIRHQSDRY KL R+WRKPKGIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MSIRPVYRPKIVKKRTKKFIRHQSDRYDKLKRNWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 82  SAKKTRHMLPNHFLKVVVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIR 141
           S KKTRHMLP  F KV+VHNVKELEVLMMQNRK+CAEI HAVSSKKR+ IV+RA+QLSIR
Sbjct: 61  SNKKTRHMLPTGFRKVLVHNVKELEVLMMQNRKFCAEIAHAVSSKKRKSIVERARQLSIR 120

Query: 142 LTNGNARIRTEENE 155
           +TN +AR+R+EENE
Sbjct: 121 VTNASARLRSEENE 134

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340721129|ref|XP_003398978.1| PREDICTED: 60S ribosomal protein L32-like [Bombus terrestris] gi|350399427|ref|XP_003485519.1| PREDICTED: 60S ribosomal protein L32-like [Bombus impatiens]

 Score =  233 bits (593), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 111/134 (82%), Positives = 123/134 (91%)

Query: 22  MSIKPVYRPKIVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYG 81
           M+I+PVYRPKIVKKR K FIRHQSDRY KL R+WRKPKGIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MAIRPVYRPKIVKKRTKKFIRHQSDRYSKLKRNWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 82  SAKKTRHMLPNHFLKVVVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIR 141
           S KKTRHMLP  F KV+VHNVKELEVLMMQNRK+CAEI H VSSKKR+ IV+RAQQLSIR
Sbjct: 61  SNKKTRHMLPTGFRKVLVHNVKELEVLMMQNRKFCAEIAHGVSSKKRKSIVERAQQLSIR 120

Query: 142 LTNGNARIRTEENE 155
           +TNG+AR+R++ENE
Sbjct: 121 VTNGSARLRSQENE 134

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|292397874|gb|ADE27977.1| ribosomal protein L32 isoform B [Nylanderia nr. pubens LZ-2010]

 Score =  233 bits (593), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 112/134 (83%), Positives = 123/134 (91%)

Query: 22  MSIKPVYRPKIVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYG 81
           MSI+PVYRPKIVKKR K FIRHQSDRY KL R+WRKPKGIDNRVRRRFKGQYLMP+IGYG
Sbjct: 1   MSIRPVYRPKIVKKRTKKFIRHQSDRYDKLKRNWRKPKGIDNRVRRRFKGQYLMPSIGYG 60

Query: 82  SAKKTRHMLPNHFLKVVVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIR 141
           S KKTRHMLP  F KV+VHNVKELEVLMMQNRK+CAEI HAVSSKKR+ IV+RAQQLSIR
Sbjct: 61  SNKKTRHMLPTGFRKVLVHNVKELEVLMMQNRKFCAEIAHAVSSKKRKAIVERAQQLSIR 120

Query: 142 LTNGNARIRTEENE 155
           +TN +AR+R+EENE
Sbjct: 121 VTNASARLRSEENE 134

Source: Nylanderia nr. pubens LZ-2010

Species: Nylanderia nr. pubens LZ-2010

Genus: Nylanderia

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|70909855|emb|CAJ17414.1| ribosomal protein L32e [Sphaerius sp. APV-2005]

 Score =  232 bits (592), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 111/134 (82%), Positives = 123/134 (91%)

Query: 22  MSIKPVYRPKIVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYG 81
           M+I+P YRPKIVKKR K FIRHQSDRY KL R+WRKPKGIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MTIRPAYRPKIVKKRTKKFIRHQSDRYCKLKRNWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 82  SAKKTRHMLPNHFLKVVVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIR 141
           S KKTRHMLP+ F KV+VHNV+ELE LMMQNRKYCAEIGHAVSSKKR+ IV+RAQQLSIR
Sbjct: 61  SNKKTRHMLPSGFRKVLVHNVRELEALMMQNRKYCAEIGHAVSSKKRKAIVERAQQLSIR 120

Query: 142 LTNGNARIRTEENE 155
           +TN NAR+R++ENE
Sbjct: 121 VTNANARLRSQENE 134

Source: Sphaerius sp. APV-2005

Species: Sphaerius sp. APV-2005

Genus: Sphaerius

Family: Sphaeriusidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|90820010|gb|ABD98762.1| putative ribosomal protein 49 [Graphocephala atropunctata]

 Score =  232 bits (592), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 112/134 (83%), Positives = 122/134 (91%)

Query: 22  MSIKPVYRPKIVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYG 81
           M+I+PVYRP IVKKR K FIRHQSDRY KL RSWRKPKGIDNRVRRRFKGQYLMP+IGYG
Sbjct: 1   MAIRPVYRPTIVKKRTKRFIRHQSDRYIKLRRSWRKPKGIDNRVRRRFKGQYLMPSIGYG 60

Query: 82  SAKKTRHMLPNHFLKVVVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIR 141
           S KKT+HMLP  F KV+VHNVKELEVLMMQNRKYCAEI HAVSSKKR+ IV+RAQQLSIR
Sbjct: 61  SNKKTKHMLPTGFRKVLVHNVKELEVLMMQNRKYCAEIAHAVSSKKRKAIVERAQQLSIR 120

Query: 142 LTNGNARIRTEENE 155
           +TN NAR+R+EENE
Sbjct: 121 VTNANARLRSEENE 134

Source: Graphocephala atropunctata

Species: Graphocephala atropunctata

Genus: Graphocephala

Family: Cicadellidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
FB|FBgn0002626	134	RpL32 "Ribosomal protein L32"	0.729	0.843	0.761	2.4e-44
UNIPROTKB|Q3SZQ6	135	RPL32 "60S ribosomal protein L	0.729	0.837	0.743	2.5e-42
UNIPROTKB|E2RKA8	135	RPL32 "60S ribosomal protein L	0.729	0.837	0.743	3.2e-42
UNIPROTKB|P62910	135	RPL32 "60S ribosomal protein L	0.729	0.837	0.743	3.2e-42
UNIPROTKB|Q6QAT0	135	RPL32 "60S ribosomal protein L	0.729	0.837	0.743	3.2e-42
MGI|MGI:98038	135	Rpl32 "ribosomal protein L32"	0.729	0.837	0.743	3.2e-42
RGD|621203	135	Rpl32 "ribosomal protein L32"	0.729	0.837	0.743	3.2e-42
UNIPROTKB|P62912	135	Rpl32 "60S ribosomal protein L	0.729	0.837	0.743	3.2e-42
UNIPROTKB|F8W727	153	RPL32 "60S ribosomal protein L	0.696	0.705	0.731	3.2e-41
UNIPROTKB|D3YTB1	133	RPL32 "60S ribosomal protein L	0.716	0.834	0.738	4.6e-41

FB|FBgn0002626 RpL32 "Ribosomal protein L32" [Drosophila melanogaster (taxid:7227)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 86/113 (76%), Positives = 98/113 (86%)

Query:    43 HQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHNV 102
             HQSDRY KL   WRKPKGIDNRVRRRFKGQYLMPNIGYGS K+TRHMLP  F K +VHNV
Sbjct:    22 HQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNV 81

Query:   103 KELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNGNARIRTEENE 155
             +ELEVL+MQNR YC EI H VSSKKR++IV+RA+QLS+RLTN N R+R++ENE
Sbjct:    82 RELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVRLTNPNGRLRSQENE 134

GO:0006412 "translation" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS;NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS

GO:0005840 "ribosome" evidence=NAS

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0000022 "mitotic spindle elongation" evidence=IMP

UNIPROTKB|Q3SZQ6 RPL32 "60S ribosomal protein L32" [Bos taurus (taxid:9913)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 84/113 (74%), Positives = 98/113 (86%)

Query:    43 HQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHNV 102
             HQSDRY K+ R+WRKP+GIDNRVRRRFKGQ LMPNIGYGS KKT+HMLP+ F K +VHNV
Sbjct:    23 HQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNV 82

Query:   103 KELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNGNARIRTEENE 155
             KELEVL+M N+ YCAEI H VSSK R+ IV+RA QL+IR+TN NAR+R+EENE
Sbjct:    83 KELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRITNPNARLRSEENE 135

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|E2RKA8 RPL32 "60S ribosomal protein L32" [Canis lupus familiaris (taxid:9615)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 84/113 (74%), Positives = 98/113 (86%)

Query:    43 HQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHNV 102
             HQSDRY K+ R+WRKP+GIDNRVRRRFKGQ LMPNIGYGS KKT+HMLP+ F K +VHNV
Sbjct:    23 HQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNV 82

Query:   103 KELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNGNARIRTEENE 155
             KELEVL+M N+ YCAEI H VSSK R+ IV+RA QL+IR+TN NAR+R+EENE
Sbjct:    83 KELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P62910 RPL32 "60S ribosomal protein L32" [Homo sapiens (taxid:9606)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 84/113 (74%), Positives = 98/113 (86%)

Query:    43 HQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHNV 102
             HQSDRY K+ R+WRKP+GIDNRVRRRFKGQ LMPNIGYGS KKT+HMLP+ F K +VHNV
Sbjct:    23 HQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNV 82

Query:   103 KELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNGNARIRTEENE 155
             KELEVL+M N+ YCAEI H VSSK R+ IV+RA QL+IR+TN NAR+R+EENE
Sbjct:    83 KELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135

GO:0006412 "translation" evidence=NAS;TAS

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|Q6QAT0 RPL32 "60S ribosomal protein L32" [Sus scrofa (taxid:9823)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 84/113 (74%), Positives = 98/113 (86%)

Query:    43 HQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHNV 102
             HQSDRY K+ R+WRKP+GIDNRVRRRFKGQ LMPNIGYGS KKT+HMLP+ F K +VHNV
Sbjct:    23 HQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNV 82

Query:   103 KELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNGNARIRTEENE 155
             KELEVL+M N+ YCAEI H VSSK R+ IV+RA QL+IR+TN NAR+R+EENE
Sbjct:    83 KELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

MGI|MGI:98038 Rpl32 "ribosomal protein L32" [Mus musculus (taxid:10090)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 84/113 (74%), Positives = 98/113 (86%)

Query:    43 HQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHNV 102
             HQSDRY K+ R+WRKP+GIDNRVRRRFKGQ LMPNIGYGS KKT+HMLP+ F K +VHNV
Sbjct:    23 HQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNV 82

Query:   103 KELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNGNARIRTEENE 155
             KELEVL+M N+ YCAEI H VSSK R+ IV+RA QL+IR+TN NAR+R+EENE
Sbjct:    83 KELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135

GO:0003735 "structural constituent of ribosome" evidence=IC

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IC

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO;IDA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

RGD|621203 Rpl32 "ribosomal protein L32" [Rattus norvegicus (taxid:10116)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 84/113 (74%), Positives = 98/113 (86%)

Query:    43 HQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHNV 102
             HQSDRY K+ R+WRKP+GIDNRVRRRFKGQ LMPNIGYGS KKT+HMLP+ F K +VHNV
Sbjct:    23 HQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNV 82

Query:   103 KELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNGNARIRTEENE 155
             KELEVL+M N+ YCAEI H VSSK R+ IV+RA QL+IR+TN NAR+R+EENE
Sbjct:    83 KELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA;ISO

UNIPROTKB|P62912 Rpl32 "60S ribosomal protein L32" [Rattus norvegicus (taxid:10116)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 84/113 (74%), Positives = 98/113 (86%)

Query:    43 HQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHNV 102
             HQSDRY K+ R+WRKP+GIDNRVRRRFKGQ LMPNIGYGS KKT+HMLP+ F K +VHNV
Sbjct:    23 HQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNV 82

Query:   103 KELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNGNARIRTEENE 155
             KELEVL+M N+ YCAEI H VSSK R+ IV+RA QL+IR+TN NAR+R+EENE
Sbjct:    83 KELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|F8W727 RPL32 "60S ribosomal protein L32" [Homo sapiens (taxid:9606)]

 Score = 414 (150.8 bits), Expect = 3.2e-41, Sum P(2) = 3.2e-41
 Identities = 79/108 (73%), Positives = 92/108 (85%)

Query:    48 YKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHNVKELEV 107
             Y  L R+WRKP+GIDNRVRRRFKGQ LMPNIGYGS KKT+HMLP+ F K +VHNVKELEV
Sbjct:    46 YYFLQRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEV 105

Query:   108 LMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNGNARIRTEENE 155
             L+M N+ YCAEI H VSSK R+ IV+RA QL+IR+TN NAR+R+EENE
Sbjct:   106 LLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 153

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|D3YTB1 RPL32 "60S ribosomal protein L32" [Homo sapiens (taxid:9606)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 82/111 (73%), Positives = 96/111 (86%)

Query:    43 HQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHNV 102
             HQSDRY K+ R+WRKP+GIDNRVRRRFKGQ LMPNIGYGS KKT+HMLP+ F K +VHNV
Sbjct:    23 HQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNV 82

Query:   103 KELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNGNARIRTEE 153
             KELEVL+M N+ YCAEI H VSSK R+ IV+RA QL+IR+TN NAR+R+EE
Sbjct:    83 KELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEE 133

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9UX90	RL32_SULSO	No assigned EC number	0.344	0.7548	0.8478	yes	N/A
Q236T0	RL32_TETTS	No assigned EC number	0.5037	0.8580	0.9925	N/A	N/A
Q8SS18	RL32_ENCCU	No assigned EC number	0.4961	0.8451	0.9424	yes	N/A
Q9HH82	RL32_PYRFU	No assigned EC number	0.4035	0.7096	0.8461	yes	N/A
O26128	RL32_METTH	No assigned EC number	0.3796	0.6838	0.9814	yes	N/A
P84312	RL32_DROBF	No assigned EC number	0.7686	0.8645	1.0	N/A	N/A
P84313	RL32_DROMD	No assigned EC number	0.7686	0.8645	1.0	N/A	N/A
P84311	RL32_DROSU	No assigned EC number	0.7686	0.8645	1.0	N/A	N/A
P84314	RL32_DROGU	No assigned EC number	0.7686	0.8645	1.0	N/A	N/A
P61128	RL32_DROSI	No assigned EC number	0.7611	0.8645	1.0	N/A	N/A
Q3SZQ6	RL32_BOVIN	No assigned EC number	0.7218	0.8580	0.9851	yes	N/A
P04359	RL32_DROME	No assigned EC number	0.7611	0.8645	1.0	yes	N/A
P62910	RL32_HUMAN	No assigned EC number	0.7218	0.8580	0.9851	yes	N/A
P62911	RL32_MOUSE	No assigned EC number	0.7218	0.8580	0.9851	yes	N/A
P62912	RL32_RAT	No assigned EC number	0.7218	0.8580	0.9851	yes	N/A
P61127	RL32_DROYA	No assigned EC number	0.7611	0.8645	1.0	N/A	N/A
P54010	RL32_METJA	No assigned EC number	0.3571	0.7096	0.7534	yes	N/A
O59435	RL32_PYRHO	No assigned EC number	0.3947	0.7096	0.8461	yes	N/A
Q751I7	RL32_ASHGO	No assigned EC number	0.5447	0.7935	0.9389	yes	N/A
Q962T1	RL32_SPOFR	No assigned EC number	0.8059	0.8645	1.0	N/A	N/A
C5A268	RL32_THEGJ	No assigned EC number	0.3565	0.7161	0.8740	yes	N/A
P84323	RL32_DROPS	No assigned EC number	0.7686	0.8645	1.0	yes	N/A
P84327	RL32_DROPE	No assigned EC number	0.7686	0.8645	1.0	N/A	N/A
P84326	RL32_DROMI	No assigned EC number	0.7686	0.8645	1.0	N/A	N/A
P84325	RL32_DROAZ	No assigned EC number	0.7686	0.8645	1.0	N/A	N/A
P84324	RL32_DROAI	No assigned EC number	0.7686	0.8645	1.0	N/A	N/A
E2RKA8	RL32_CANFA	No assigned EC number	0.7218	0.8580	0.9851	yes	N/A
O42935	RL32B_SCHPO	No assigned EC number	0.5163	0.7870	0.9606	yes	N/A
Q76KA3	RL32_MACFA	No assigned EC number	0.7218	0.8580	0.9851	N/A	N/A
Q90YT6	RL32_ICTPU	No assigned EC number	0.6992	0.8580	0.9851	N/A	N/A
B6YSN1	RL32_THEON	No assigned EC number	0.3596	0.7096	0.8730	yes	N/A
Q6FS03	RL32_CANGA	No assigned EC number	0.5121	0.7935	0.9389	yes	N/A
Q94460	RL32_DROAC	No assigned EC number	0.7611	0.8645	1.0	N/A	N/A
Q8ZVV9	RL32_PYRAE	No assigned EC number	0.3513	0.6967	0.7105	yes	N/A
Q6QAT0	RL32_PIG	No assigned EC number	0.7218	0.8580	0.9851	yes	N/A
C6A177	RL32_THESM	No assigned EC number	0.3703	0.6709	0.8188	yes	N/A
P17932	RL32P_MOUSE	No assigned EC number	0.6541	0.8580	0.9851	no	N/A
Q9FHG2	RL322_ARATH	No assigned EC number	0.6	0.8387	0.9774	yes	N/A
Q8TW13	RL32_METKA	No assigned EC number	0.3805	0.7161	0.8473	yes	N/A
Q9HIS4	RL32_THEAC	No assigned EC number	0.3181	0.8064	0.9615	yes	N/A
Q55AB5	RL32_DICDI	No assigned EC number	0.5692	0.8387	0.9774	yes	N/A
P38061	RL32_YEAST	No assigned EC number	0.5040	0.7935	0.9461	yes	N/A
Q5JJG5	RL32_PYRKO	No assigned EC number	0.3684	0.7096	0.8730	yes	N/A
Q9V1V2	RL32_PYRAB	No assigned EC number	0.3947	0.7096	0.8461	yes	N/A
P79015	RL32A_SCHPO	No assigned EC number	0.5163	0.7870	0.9606	yes	N/A
Q8WRF3	RL32_APIME	No assigned EC number	0.7985	0.8645	1.0	yes	N/A
P49211	RL321_ARATH	No assigned EC number	0.6307	0.8387	0.9774	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	155
PTZ00159	133	PTZ00159, PTZ00159, 60S ribosomal protein L32; Pro	2e-64
cd00513	107	cd00513, Ribosomal_L32_L32e, Ribosomal_L32_L32e: L	9e-57
pfam01655	110	pfam01655, Ribosomal_L32e, Ribosomal protein L32	6e-55
COG1717	133	COG1717, RPL32, Ribosomal protein L32E [Translatio	6e-36
PRK08562	125	PRK08562, rpl32e, 50S ribosomal protein L32e; Vali	3e-25
PRK12766	232	PRK12766, PRK12766, 50S ribosomal protein L32e; Pr	2e-09

>gnl|CDD|240297 PTZ00159, PTZ00159, 60S ribosomal protein L32; Provisional

 Score =  192 bits (490), Expect = 2e-64
 Identities = 82/133 (61%), Positives = 105/133 (78%)

Query: 23  SIKPVYRPKIVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGS 82
            +KP  + KIVKKR K F R QS+R+ ++  SWRKP+GIDNRVRRRFKG  LMP IGYGS
Sbjct: 1   MVKPKVKKKIVKKRTKKFTRFQSERFPRVKPSWRKPRGIDNRVRRRFKGTRLMPKIGYGS 60

Query: 83  AKKTRHMLPNHFLKVVVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRL 142
            KKTR++LP+ F K  V NVK+LE+L+M NRKY AEI H VS++KR+ IV+RA++L++R+
Sbjct: 61  DKKTRYLLPSGFYKFPVRNVKDLEMLLMHNRKYAAEIAHNVSARKRKAIVERAKELNVRV 120

Query: 143 TNGNARIRTEENE 155
            NGNAR+R EE E
Sbjct: 121 LNGNARLRKEEKE 133

Length = 133

>gnl|CDD|238284 cd00513, Ribosomal_L32_L32e, Ribosomal_L32_L32e: L32 is a protein from the large subunit that contains a surface-exposed globular domain and a finger-like projection that extends into the RNA core to stabilize the tertiary structure

 Score =  172 bits (438), Expect = 9e-57
 Identities = 69/107 (64%), Positives = 85/107 (79%)

Query: 38  KVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKV 97
           K F RHQSDRYK+L  SWRKP+GIDN+VRRRFKG+  MP IGYGS KKTR + P+ F KV
Sbjct: 1   KKFKRHQSDRYKRLGDSWRKPRGIDNKVRRRFKGKPAMPKIGYGSPKKTRGLHPSGFKKV 60

Query: 98  VVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTN 144
           +VHNVKELEVL M NR Y A I H V ++KR++IV+RA++L I++ N
Sbjct: 61  LVHNVKELEVLDMHNRTYAARIAHTVGARKRKEIVERAKELGIKVLN 107

L32 does not appear to play a role in forming the A (aminacyl), P (peptidyl) or E (exit) sites of the ribosome, but does interact with 23S rRNA, which has a "kink-turn" secondary structure motif. L32 is overexpressed in human prostate cancer and has been identified as a stably expressed housekeeping gene in macrophages of human chronic obstructive pulmonary disease (COPD) patients. In Schizosaccharomyces pombe, L32 has also been suggested to play a role as a transcriptional regulator in the nucleus. Found in archaea and eukaryotes, this protein is known as L32 in eukaryotes and L32e in archaea. Length = 107

>gnl|CDD|190064 pfam01655, Ribosomal_L32e, Ribosomal protein L32

 Score =  168 bits (427), Expect = 6e-55
 Identities = 65/110 (59%), Positives = 85/110 (77%)

Query: 36  RRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFL 95
           + K F RHQSDRYK+L  SWRKP+GIDN+VRRRFKG+  MP IGYGS KK R + P+ F 
Sbjct: 1   KTKKFKRHQSDRYKRLKPSWRKPRGIDNKVRRRFKGKPPMPKIGYGSPKKVRGLHPSGFK 60

Query: 96  KVVVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNG 145
           +V+VHNVK+LE L+M NR Y A I H V ++KR++IV+RA++L I++ N 
Sbjct: 61  EVLVHNVKDLEKLLMDNRTYAARIAHTVGARKRKEIVERAKELGIKVLNP 110

This family includes ribosomal protein L32 from eukaryotes and archaebacteria. Length = 110

>gnl|CDD|224631 COG1717, RPL32, Ribosomal protein L32E [Translation, ribosomal structure and biogenesis]

 Score =  120 bits (303), Expect = 6e-36
 Identities = 52/127 (40%), Positives = 83/127 (65%), Gaps = 3/127 (2%)

Query: 25  KPVYRPKIVKKRRKV-FIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSA 83
           K + + + V KR+K  F R +SDRYK+L   WR+P+GID+++RR+ KG+  M  IGY S 
Sbjct: 9   KRLLKIRRVLKRKKPEFKRQESDRYKRLGEKWRRPRGIDSKMRRKLKGKPPMVKIGYRSP 68

Query: 84  KKTRHMLPNHFLKVVVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLT 143
           K  R + P+ + +V+VHNVK+LE L  + +   A I   V ++KR +I++RA++L I++ 
Sbjct: 69  KAVRGLHPSGYEEVLVHNVKDLEKLDPETQ--AARIASTVGARKRIEILERARELGIKVL 126

Query: 144 NGNARIR 150
           N   R+ 
Sbjct: 127 NPGGRVE 133

Length = 133

>gnl|CDD|236288 PRK08562, rpl32e, 50S ribosomal protein L32e; Validated

 Score = 93.1 bits (232), Expect = 3e-25
 Identities = 41/115 (35%), Positives = 70/115 (60%), Gaps = 2/115 (1%)

Query: 31  KIVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHML 90
             +K+++  F R    RYK+L   WR+P+G+D+++R + KG+  +  +GY S K  R + 
Sbjct: 11  LKLKRKKPEFKRQDWHRYKRLGDKWRRPRGLDSKMRLKLKGKPAIVEVGYRSPKAVRGLH 70

Query: 91  PNHFLKVVVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNG 145
           P+ + +V+VHNVKELE L        A I   V  +KR +I+++A++L I++ N 
Sbjct: 71  PSGYEEVLVHNVKELEKL--DPETQAARIASTVGKRKRLEILKKARELGIKVLNP 123

Length = 125

>gnl|CDD|183731 PRK12766, PRK12766, 50S ribosomal protein L32e; Provisional

 Score = 54.1 bits (130), Expect = 2e-09
 Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 6/118 (5%)

Query: 31  KIVKKRRKV----FIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKT 86
           +++ +RR+     F R    + K+   SWR+P+G  ++ RR  KG+      G+ +    
Sbjct: 106 RLLTQRRREGKPQFNRQDYHKKKRTPTSWRRPRGGLSKQRRGIKGKGDTVEAGFRTPTAV 165

Query: 87  RHMLPNHFLKVVVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTN 144
           R   P+ F +V VHN  +LE   +        I   V ++KR  I + A++  IR+ N
Sbjct: 166 RGKHPSGFEEVRVHNTDDLE--GVDGDTEAVRIASKVGARKRERIEEVAEEQGIRVLN 221

Length = 232

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	155
PTZ00159	133	60S ribosomal protein L32; Provisional	100.0
KOG0878|consensus	124		100.0
PF01655	110	Ribosomal_L32e: Ribosomal protein L32; InterPro: I	100.0
cd00513	107	Ribosomal_L32_L32e Ribosomal_L32_L32e: L32 is a pr	100.0
PRK08562	125	rpl32e 50S ribosomal protein L32e; Validated	100.0
PRK12766	232	50S ribosomal protein L32e; Provisional	100.0
COG1717	133	RPL32 Ribosomal protein L32E [Translation, ribosom	100.0

>PTZ00159 60S ribosomal protein L32; Provisional

Probab=100.00  E-value=7.5e-68  Score=411.20  Aligned_cols=132  Identities=62%  Similarity=1.019  Sum_probs=130.3

Q ss_pred             ecCCCCCccccccCCCcccccccccccccccccCCccCCcchhhhccCCcCCCCCCCCCCccccccCCCCceEEEEechh
Q psy14535         24 IKPVYRPKIVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHNVK  103 (155)
Q Consensus        24 ~~pl~k~kivKKr~~kF~R~~sdr~~rvk~sWRKPrGiDnkvRrr~kG~~~mP~iGYgS~k~tR~l~PsGf~~vlV~Nvk  103 (155)
                      +.|+++++|+||++++|+|||||+|+||++|||||+||||+||++|+|+++||+||||||++|||||||||++|+|||++
T Consensus         2 ~~p~~~~~ivkkr~~kF~R~~s~ry~rl~~sWRKPrGiDnkvRrr~kG~~~mp~iGYgS~k~tR~l~PsG~~~vlV~N~k   81 (133)
T PTZ00159          2 VKPKVKKKIVKKRTKKFTRFQSERFPRVKPSWRKPRGIDNRVRRRFKGTRLMPKIGYGSDKKTRYLLPSGFYKFPVRNVK   81 (133)
T ss_pred             CCCccccccccccCCcccccchhhccccccccCCCCCcccchhccccCccCCCcCccCCChhhcccCCCCCeeEEecCHH
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHhhcCcceEEEeecCCccccHHHHHHHHHHcCCceecCCcceeecccC
Q psy14535        104 ELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNGNARIRTEENE  155 (155)
Q Consensus       104 eLe~L~m~n~~~aaeIAh~Vg~kkR~~I~erA~el~ikV~N~~arl~~ee~e  155 (155)
                      |||.|+|||++|||||||+||++||++|+++|+||||+|+||+|||++||+|
T Consensus        82 eLe~L~m~~~~~aa~Ia~~Vg~rKR~~I~~rA~eL~ikV~N~~arl~~ee~e  133 (133)
T PTZ00159         82 DLEMLLMHNRKYAAEIAHNVSARKRKAIVERAKELNVRVLNGNARLRKEEKE  133 (133)
T ss_pred             HHHHHhcCCcceEEEEecccccchHHHHHHHHHHhCCcccCCCcccchhhcC
Confidence            9999999999999999999999999999999999999999999999999987

>KOG0878|consensus

Probab=100.00  E-value=4.7e-65  Score=388.98  Aligned_cols=124  Identities=72%  Similarity=1.161  Sum_probs=121.8

Q ss_pred             eeecCCCCCccccccCCCcccccccccccccccccCCccCCcchhhhccCCcCCCCCCCCCCccccccCCCCceEEEEec
Q psy14535         22 MSIKPVYRPKIVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHN  101 (155)
Q Consensus        22 ~~~~pl~k~kivKKr~~kF~R~~sdr~~rvk~sWRKPrGiDnkvRrr~kG~~~mP~iGYgS~k~tR~l~PsGf~~vlV~N  101 (155)
                      |+++||++|||+||++++|+|||||+|++++++||||+||||+|||||+|+++||+||||||++||||+||||++|+|||
T Consensus         1 ~~~~pl~~~kivkkr~kkFirh~sdry~~v~~~WrkPrGiDnrVrRRFkgqilMPnIgYgsnKkTrh~lP~G~~kflv~n   80 (124)
T KOG0878|consen    1 ATMRPLVKPKIVKKRTKKFIRHQSDRYVRVKESWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTRHMLPNGFKKFLVHN   80 (124)
T ss_pred             CCCccccccHHHHHhcccccccccchhhhhhhhccCCCcchhHHHHHhccceeccccccCCCccceecCChhhhHHhhhh
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHhhcCcceEEEeecCCccccHHHHHHHHHHcCCceecC
Q psy14535        102 VKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNG  145 (155)
Q Consensus       102 vkeLe~L~m~n~~~aaeIAh~Vg~kkR~~I~erA~el~ikV~N~  145 (155)
                      |+|||+|+|||++|||||||+||++||++|+|||+||||+|||+
T Consensus        81 vkele~Llm~nk~YcaEIAhnVsak~r~~Ivera~qL~i~vtn~  124 (124)
T KOG0878|consen   81 VKELEVLLMHNKTYCAEIAHNVSAKKRKAIVERAAQLGIRVTNR  124 (124)
T ss_pred             hhHHHHHHHhhHHHHHHHhhccccccHHHHHHHHHhhceeccCC
Confidence            99999999999999999999999999999999999999999996

>PF01655 Ribosomal_L32e: Ribosomal protein L32; InterPro: IPR001515 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=1.7e-60  Score=360.03  Aligned_cols=110  Identities=67%  Similarity=1.087  Sum_probs=86.5

Q ss_pred             cCCCcccccccccccccccccCCccCCcchhhhccCCcCCCCCCCCCCccccccCCCCceEEEEechhhhHHHhhcCcce
Q psy14535         36 RRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHNVKELEVLMMQNRKY  115 (155)
Q Consensus        36 r~~kF~R~~sdr~~rvk~sWRKPrGiDnkvRrr~kG~~~mP~iGYgS~k~tR~l~PsGf~~vlV~NvkeLe~L~m~n~~~  115 (155)
                      +|++|+|||||+|+||++|||||+||||++|++|+|+++||+||||||++|||||||||++|+||||+|||.|+|||++|
T Consensus         1 k~~~F~R~~s~r~~rl~~sWRKPrGiDnk~Rrr~kG~~~mp~iGYgs~k~tR~l~PsG~~~~lV~n~~eLe~L~m~~~~~   80 (110)
T PF01655_consen    1 KTKKFIRHQSDRYKRLKDSWRKPRGIDNKVRRRFKGKPLMPNIGYGSPKKTRGLHPSGFRKVLVHNVKELEVLLMDNKSY   80 (110)
T ss_dssp             --S--B-TTTTTSTTS-SS-----SSS-TCCHT-TTS---S-GCGS--TTTTTB-TTSSEEEEESSHHHHHHCHHHTTTE
T ss_pred             CCCcccccccccccccccccCCCCcccCcceeeecCccCccccccCCCccccccCCCCCeEEEEeccchHHHHhcCCcce
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeecCCccccHHHHHHHHHHcCCceecC
Q psy14535        116 CAEIGHAVSSKKRRDIVQRAQQLSIRLTNG  145 (155)
Q Consensus       116 aaeIAh~Vg~kkR~~I~erA~el~ikV~N~  145 (155)
                      ||||||+||+|||++|+|+|+||||+|+||
T Consensus        81 ~~~Ia~~Vg~kkr~~I~erA~el~ikV~N~  110 (110)
T PF01655_consen   81 AAEIAHNVGSKKRKEIVERAAELGIKVLNP  110 (110)
T ss_dssp             EEEE-TTS-HHHHHHHHHHHHHHT-EBSSH
T ss_pred             EEEEecCcccccHHHHHHHHHHhCCcccCC
Confidence            999999999999999999999999999996

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The L32e family consists of proteins that have 135 to 240 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3O58_b 3IZS_h 1S1I 3O5H_b 2ZKR_y 1Q7Y_Z 1VQ7_Y 3CCQ_Y 3CCV_Y 3CC7_Y ....

>cd00513 Ribosomal_L32_L32e Ribosomal_L32_L32e: L32 is a protein from the large subunit that contains a surface-exposed globular domain and a finger-like projection that extends into the RNA core to stabilize the tertiary structure

Probab=100.00  E-value=1.9e-59  Score=353.03  Aligned_cols=107  Identities=64%  Similarity=1.047  Sum_probs=106.1

Q ss_pred             CCcccccccccccccccccCCccCCcchhhhccCCcCCCCCCCCCCccccccCCCCceEEEEechhhhHHHhhcCcceEE
Q psy14535         38 KVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHNVKELEVLMMQNRKYCA  117 (155)
Q Consensus        38 ~kF~R~~sdr~~rvk~sWRKPrGiDnkvRrr~kG~~~mP~iGYgS~k~tR~l~PsGf~~vlV~NvkeLe~L~m~n~~~aa  117 (155)
                      ++|.|||||+|+||++|||||+||||+||++|+|+++||+||||||++|||||||||++|+|||++|||+|+|||++|||
T Consensus         1 ~kF~R~~s~r~~rl~~sWRkPrGiDnkvRrr~kg~~~mp~iGYgS~k~tR~l~PsG~~~~lV~N~~eLe~l~~~n~~~~a   80 (107)
T cd00513           1 KKFKRHQSDRYKRLGDSWRKPRGIDNKVRRRFKGKPAMPKIGYGSPKKTRGLHPSGFKKVLVHNVKELEVLDMHNRTYAA   80 (107)
T ss_pred             CCccccchhcccccccccCCCCCcccchhccccCCCCCCcccCCCChhhcccCCCCCeEEEecCHHHHHHHhccCCeeEE
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCccccHHHHHHHHHHcCCceec
Q psy14535        118 EIGHAVSSKKRRDIVQRAQQLSIRLTN  144 (155)
Q Consensus       118 eIAh~Vg~kkR~~I~erA~el~ikV~N  144 (155)
                      ||||+||+|||++|+++|+||||+|+|
T Consensus        81 ~Ia~~Vg~rKR~~I~~rA~el~ikV~N  107 (107)
T cd00513          81 RIAHTVGARKRKEIVERAKELGIKVLN  107 (107)
T ss_pred             EEecccccchHHHHHHHHHHhCCcccC
Confidence            999999999999999999999999998

L32 does not appear to play a role in forming the A (aminacyl), P (peptidyl) or E (exit) sites of the ribosome, but does interact with 23S rRNA, which has a "kink-turn" secondary structure motif. L32 is overexpressed in human prostate cancer and has been identified as a stably expressed housekeeping gene in macrophages of human chronic obstructive pulmonary disease (COPD) patients. In Schizosaccharomyces pombe, L32 has also been suggested to play a role as a transcriptional regulator in the nucleus. Found in archaea and eukaryotes, this protein is known as L32 in eukaryotes and L32e in archaea.

>PRK08562 rpl32e 50S ribosomal protein L32e; Validated

Probab=100.00  E-value=1e-58  Score=356.93  Aligned_cols=113  Identities=36%  Similarity=0.685  Sum_probs=111.0

Q ss_pred             cccccCCCcccccccccccccccccCCccCCcchhhhccCCcCCCCCCCCCCccccccCCCCceEEEEechhhhHHHhhc
Q psy14535         32 IVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHNVKELEVLMMQ  111 (155)
Q Consensus        32 ivKKr~~kF~R~~sdr~~rvk~sWRKPrGiDnkvRrr~kG~~~mP~iGYgS~k~tR~l~PsGf~~vlV~NvkeLe~L~m~  111 (155)
                      .+||++++|.|||||+|++|++|||||+||||+||++|+|+++||+||||||++|||||||||++|+||||+|||.|  |
T Consensus        12 ~~kkk~~kF~R~~s~r~~rl~~sWRKPrGiDnkvRrr~kg~~~mp~iGYgS~k~tR~l~PsG~~~vlV~N~keLe~l--~   89 (125)
T PRK08562         12 KLKRKKPEFKRQDWHRYKRLGDKWRRPRGLDSKMRLKLKGKPAIVEVGYRSPKAVRGLHPSGYEEVLVHNVKELEKL--D   89 (125)
T ss_pred             HhhccCCCcccccccccccccccCCCCCCcccchhccccCCCCCCcCCcCCChhhcccCCCCCeeEEecCHHHhhhc--c
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999  8


Q ss_pred             CcceEEEeecCCccccHHHHHHHHHHcCCceecCC
Q psy14535        112 NRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNGN  146 (155)
Q Consensus       112 n~~~aaeIAh~Vg~kkR~~I~erA~el~ikV~N~~  146 (155)
                      |++|||||||+||++||++|+++|+||||+|+||.
T Consensus        90 ~~~~aa~Ia~~Vg~rKR~~I~~rA~el~ikV~N~~  124 (125)
T PRK08562         90 PETQAARIASTVGKRKRLEILKKARELGIKVLNPG  124 (125)
T ss_pred             CCceEEEEeccccchhHHHHHHHHHHhCCcccCCC
Confidence            99999999999999999999999999999999996

>PRK12766 50S ribosomal protein L32e; Provisional

Probab=100.00  E-value=7.6e-54  Score=357.56  Aligned_cols=112  Identities=28%  Similarity=0.433  Sum_probs=109.6

Q ss_pred             cccCCCcccccccccccccccccCCccCCcchhhhccCCcCCCCCCCCCCccccccCCCCceEEEEechhhhHHHhhcCc
Q psy14535         34 KKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHNVKELEVLMMQNR  113 (155)
Q Consensus        34 KKr~~kF~R~~sdr~~rvk~sWRKPrGiDnkvRrr~kG~~~mP~iGYgS~k~tR~l~PsGf~~vlV~NvkeLe~L~m~n~  113 (155)
                      ++++|+|+|||||+|+||++|||||+||||+||++|+|+++||+||||||++|||||||||++|+||||+|||+|  ||+
T Consensus       113 ~~~~p~F~R~~~~r~~r~~~sWRkPrGidnk~Rr~~kg~~~mp~iGYgS~k~~R~l~PsG~~~vlV~N~~eLe~l--~~~  190 (232)
T PRK12766        113 REGKPQFNRQDYHKKKRTPTSWRRPRGGLSKQRRGIKGKGDTVEAGFRTPTAVRGKHPSGFEEVRVHNTDDLEGV--DGD  190 (232)
T ss_pred             hccCCCeecccccccccccccCCCCCCCccchhcccCCCCCCCcCCCCCChhhcccCCCCCeeEEecCHHHHhhc--cCc
Confidence            567899999999999999999999999999999999999999999999999999999999999999999999999  899


Q ss_pred             ceEEEeecCCccccHHHHHHHHHHcCCceecCCc
Q psy14535        114 KYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNGNA  147 (155)
Q Consensus       114 ~~aaeIAh~Vg~kkR~~I~erA~el~ikV~N~~a  147 (155)
                      +|||+|||+||+|||++|+++|+||||+|+||+-
T Consensus       191 ~~aa~Ia~~Vg~rKR~~I~erA~el~ikV~N~~~  224 (232)
T PRK12766        191 TEAVRIASKVGARKRERIEEVAEEQGIRVLNPTY  224 (232)
T ss_pred             ceEEEeeccccchhHHHHHHHHHHhCCcccCCCc
Confidence            9999999999999999999999999999999984

>COG1717 RPL32 Ribosomal protein L32E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=9.4e-54  Score=331.20  Aligned_cols=125  Identities=40%  Similarity=0.695  Sum_probs=116.6

Q ss_pred             eecCCCCCccccc-cCCCcccccccccccccccccCCccCCcchhhhccCCcCCCCCCCCCCccccccCCCCceEEEEec
Q psy14535         23 SIKPVYRPKIVKK-RRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHN  101 (155)
Q Consensus        23 ~~~pl~k~kivKK-r~~kF~R~~sdr~~rvk~sWRKPrGiDnkvRrr~kG~~~mP~iGYgS~k~tR~l~PsGf~~vlV~N  101 (155)
                      ...+|++++++.| ++|+|+||+||+|+|++++||+|+||||++|++++|.++||+|||+||+++||||||||++|||||
T Consensus         7 ~~~rLl~ir~~~k~kKp~F~R~~~~Rykrl~~~WRrPrG~dsK~Rr~~kg~p~~v~iGyrsPk~vRglhPSG~~~VlV~N   86 (133)
T COG1717           7 ERKRLLKIRRVLKRKKPEFKRQESDRYKRLGEKWRRPRGIDSKMRRKLKGKPPMVKIGYRSPKAVRGLHPSGYEEVLVHN   86 (133)
T ss_pred             HHHHHHHHHHHHHhccchhhhHHHHHHhhhhhhccCCCCchHHHHHHhcCCCCCcccCCCCcHhhcccCCCccceeeeec
Confidence            3456778886655 567899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHhhcCcceEEEeecCCccccHHHHHHHHHHcCCceecCCcce
Q psy14535        102 VKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNGNARI  149 (155)
Q Consensus       102 vkeLe~L~m~n~~~aaeIAh~Vg~kkR~~I~erA~el~ikV~N~~arl  149 (155)
                      ++|||.|+  +.++||+|||+||++||.+|+++|.||||+|+||++|+
T Consensus        87 v~dLe~ld--p~~~aarIAs~VG~rKR~eI~~rA~elGikVlN~~~r~  132 (133)
T COG1717          87 VKDLEKLD--PETQAARIASTVGARKRIEILERARELGIKVLNPGGRV  132 (133)
T ss_pred             HHHHhhcC--chhHHHHHHHhhhHHHHHHHHHHHHHhCcEEeCCcccc
Confidence            99999995  45789999999999999999999999999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	155
2zkr_y	135	Structure Of A Mammalian Ribosomal 60s Subunit With		3e-46
3izr_h	133	Localization Of The Large Subunit Ribosomal Protein		4e-40
3zf7_i	132	High-resolution Cryo-electron Microscopy Structure		3e-27
4a17_X	134	T.Thermophila 60s Ribosomal Subunit In Complex With		2e-25
1s1i_0	130	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		2e-24
3jyw_0	109	Structure Of The 60s Proteins For Eukaryotic Riboso		1e-23
2zkr_9	58	Structure Of A Mammalian Ribosomal 60s Subunit With		3e-17
3j21_b	130	Promiscuous Behavior Of Proteins In Archaeal Riboso		7e-17
1jj2_X	240	Fully Refined Crystal Structure Of The Haloarcula M		1e-07
1s72_Y	241	Refined Crystal Structure Of The Haloarcula Marismo		1e-07
3cma_Y	240	The Structure Of Cca And Cca-Phe-Cap-Bio Bound To T		1e-07
3g4s_Y	142	Co-Crystal Structure Of Tiamulin Bound To The Large		3e-07
1ffk_V	143	Crystal Structure Of The Large Ribosomal Subunit Fr		4e-07

>pdb|2ZKR|YY Chain y, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 135

Iteration: 1
 Score =  180 bits (456), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 84/113 (74%), Positives = 98/113 (86%)
Query: 43  HQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHNV 102
           HQSDRY K+ R+WRKP+GIDNRVRRRFKGQ LMPNIGYGS KKT+HMLP+ F K +VHNV
Sbjct: 23  HQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNV 82
Query: 103 KELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNGNARIRTEENE 155
           KELEVL+M N+ YCAEI H VSSK R+ IV+RA QL+IR+TN NAR+R+EENE
Sbjct: 83  KELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135

>pdb|3IZR|HH Chain h, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 133

Iteration: 1
 Score =  160 bits (404), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 90/111 (81%)
Query: 45  SDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHNVKE 104
           SDRY  L  SWR+PKGID+RVRR+FKG  LMPNIGYGS KKTRH LPN F K VVHNV E
Sbjct: 23  SDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSE 82
Query: 105 LEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNGNARIRTEENE 155
           LE+LMM NR YCAEI H VS++KR++IV+RA QL I +TN  AR+R++E+E
Sbjct: 83  LELLMMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE 133

>pdb|3ZF7|II Chain i, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 132

Iteration: 1
 Score =  117 bits (292), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 53/108 (49%), Positives = 79/108 (73%)
Query: 43  HQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHNV 102
           H+ + + +L  SWRKP+G D+ VRRR+KGQ  MPN GYGS ++T+++ P+ F    V+NV
Sbjct: 21  HRCELFPQLSSSWRKPRGEDSPVRRRYKGQKAMPNKGYGSDRRTKYITPSGFKNFPVNNV 80
Query: 103 KELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNGNARIR 150
           ++L +L+MQNRKY   I H V +K R+ IV++A +L +RL NGNA++R
Sbjct: 81  QDLYMLLMQNRKYAGVISHTVGAKARKAIVRKAHELDVRLINGNAKLR 128

>pdb|4A17|X Chain X, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 134

Iteration: 1
 Score =  111 bits (277), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 54/111 (48%), Positives = 81/111 (72%)
Query: 44  QSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHNVK 103
           +S+ + KL  SWR+P+GIDNRVRRRF+GQ  M  IG+ S   T+H+LPN F K ++ N  
Sbjct: 23  ESEDFAKLDSSWRRPRGIDNRVRRRFRGQRRMAKIGFASDAATKHLLPNGFKKFLIRNPA 82
Query: 104 ELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNGNARIRTEEN 154
           +LE+L+M NR YC EI H +S++ +  +V+RA +L +RLTN NA+++ +E+
Sbjct: 83  DLEILLMNNRTYCGEIAHNISAQVKAALVKRAAELGVRLTNANAKVKVQES 133

>pdb|1S1I|0 Chain 0, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h. Length = 130

Iteration: 1
 Score =  107 bits (268), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/110 (48%), Positives = 71/110 (64%)
Query: 43  HQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHNV 102
           H SDRY ++  +WRK KGID+ VRRRF+G    P IGYGS KKT+ + P+     +V NV
Sbjct: 20  HHSDRYHRVAENWRKQKGIDSVVRRRFRGNISQPKIGYGSNKKTKFLSPSGHKTFLVANV 79
Query: 103 KELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNGNARIRTE 152
           K+LE L M  + Y AEI H +S+K R  I+ RA+ L I++TN   R+  E
Sbjct: 80  KDLETLTMHTKTYAAEIAHNISAKNRVVILARAKALGIKVTNPKGRLALE 129

>pdb|3JYW|0 Chain 0, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 109

Iteration: 1
 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/102 (50%), Positives = 68/102 (66%)
Query: 43  HQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHNV 102
           H SDRY ++  +WRK KGID+ VRRRF+G    P IGYGS KKT+ + P+     +V NV
Sbjct: 7   HHSDRYHRVAENWRKQKGIDSVVRRRFRGNISQPKIGYGSNKKTKFLSPSGHKTFLVANV 66
Query: 103 KELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTN 144
           K+LE L M  + Y AEI H +S+K R  I+ RA+ L I++TN
Sbjct: 67  KDLETLTMHTKTYAAEIAHNISAKNRVVILARAKALGIKVTN 108

>pdb|2ZKR|9 Chain 9, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 58

Iteration: 1
 Score = 84.0 bits (206), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 39/57 (68%), Positives = 47/57 (82%)
Query: 88  HMLPNHFLKVVVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTN 144
           HMLP+ F K +VHNVKELEVL+M N+ YCAEI H VSSK R+ IV+RA QL+IR+TN
Sbjct: 1   HMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTN 57

>pdb|3J21|BB Chain b, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 130

Iteration: 1
 Score = 82.8 bits (203), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 62/90 (68%), Gaps = 2/90 (2%)
Query: 55  WRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHNVKELEVLMMQNRK 114
           WR+PKGID+++R + KG+   P+IG+ S K  R + P+ + +V+VHNVKELE L    ++
Sbjct: 40  WRRPKGIDSKMRLKLKGKPRSPSIGWSSPKLVRGLHPSGYEEVLVHNVKELEAL--DPKR 97
Query: 115 YCAEIGHAVSSKKRRDIVQRAQQLSIRLTN 144
             A I H V  KKR +I++RA++L I++ N
Sbjct: 98  QAARIAHTVGKKKRIEIIKRAEELGIKVLN 127

>pdb|1JJ2|X Chain X, Fully Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 240

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 49  KKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHNVKELEVL 108
           K++  SWRKP+G  ++ RR  KG+      G+ S    R   P+ F +V VHNV +LE  
Sbjct: 137 KRVSTSWRKPRGQLSKQRRGIKGKGDTVEAGFRSPTAVRGKHPSGFEEVRVHNVDDLE-- 194
Query: 109 MMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTN 144
            +        I   V ++KR  I + A+   IR+ N
Sbjct: 195 GVDGDTEAVRIASKVGARKRERIEEEAEDAGIRVLN 230

>pdb|1S72|Y Chain Y, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 241

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 49  KKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHNVKELEVL 108
           K++  SWRKP+G  ++ RR  KG+      G+ S    R   P+ F +V VHNV +LE  
Sbjct: 138 KRVSTSWRKPRGQLSKQRRGIKGKGDTVEAGFRSPTAVRGKHPSGFEEVRVHNVDDLE-- 195
Query: 109 MMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTN 144
            +        I   V ++KR  I + A+   IR+ N
Sbjct: 196 GVDGDTEAVRIASKVGARKRERIEEEAEDAGIRVLN 231

>pdb|3CMA|Y Chain Y, The Structure Of Cca And Cca-Phe-Cap-Bio Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui Length = 240

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 49  KKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHNVKELEVL 108
           K++  SWRKP+G  ++ RR  KG+      G+ S    R   P+ F +V VHNV +LE  
Sbjct: 138 KRVSTSWRKPRGQLSKQRRGIKGKGDTVEAGFRSPTAVRGKHPSGFEEVRVHNVDDLE-- 195
Query: 109 MMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTN 144
            +        I   V ++KR  I + A+   IR+ N
Sbjct: 196 GVDGDTEAVRIASKVGARKRERIEEEAEDAGIRVLN 231

>pdb|3G4S|Y Chain Y, Co-Crystal Structure Of Tiamulin Bound To The Large Ribosomal Subunit Length = 142

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 49  KKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHNVKELEVL 108
           K++  SWRKP+G  ++ RR  KG+      G+ S    R   P+ F +V VHNV +LE  
Sbjct: 43  KRVSTSWRKPRGQLSKQRRGIKGKGDTVEAGFRSPTAVRGKHPSGFEEVRVHNVDDLE-- 100
Query: 109 MMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTN 144
            +        I   V ++KR  I + A+   IR+ N
Sbjct: 101 GVDGDTEAVRIASKVGARKRERIEEEAEDAGIRVLN 136

>pdb|1FFK|V Chain V, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 143

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 49  KKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHNVKELEVL 108
           K++  SWRKP+G  ++ RR  KG+      G+ S    R   P+ F +V VHNV +LE  
Sbjct: 40  KRVSTSWRKPRGQLSKQRRGIKGKGDTVEAGFRSPTAVRGKHPSGFEEVRVHNVDDLE-- 97
Query: 109 MMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTN 144
            +        I   V ++KR  I + A+   IR+ N
Sbjct: 98  GVDGDTEAVRINSKVGARKRERIEEEAEDAGIRVLN 133
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	155
4a17_X	134	RPL32, 60S ribosomal protein L32; eukaryotic ribos	6e-48
3iz5_H	258	60S ribosomal protein L7A (L7AE); eukaryotic ribos	2e-47
2zkr_y	135	60S ribosomal protein L32; protein-RNA complex, 60	8e-47
3u5e_e	130	60S ribosomal protein L32, 60S ribosomal protein L	7e-46
1vq8_Y	241	50S ribosomal protein L32E; ribosome 50S, protein-	3e-40

>4a17_X RPL32, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_X 4a1c_X 4a1e_X Length = 134

 Score =  150 bits (380), Expect = 6e-48
 Identities = 67/133 (50%), Positives = 97/133 (72%)

Query: 22  MSIKPVYRPKIVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYG 81
           M+IKPV   KI+KKR K F+R +S+ + KL  SWR+P+GIDNRVRRRF+GQ  M  IG+ 
Sbjct: 1   MAIKPVAHKKIIKKRTKKFVRFESEDFAKLDSSWRRPRGIDNRVRRRFRGQRRMAKIGFA 60

Query: 82  SAKKTRHMLPNHFLKVVVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIR 141
           S   T+H+LPN F K ++ N  +LE+L+M NR YC EI H +S++ +  +V+RA +L +R
Sbjct: 61  SDAATKHLLPNGFKKFLIRNPADLEILLMNNRTYCGEIAHNISAQVKAALVKRAAELGVR 120

Query: 142 LTNGNARIRTEEN 154
           LTN NA+++ +E+
Sbjct: 121 LTNANAKVKVQES 133

>2zkr_y 60S ribosomal protein L32; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 135

 Score =  147 bits (373), Expect = 8e-47
 Identities = 96/132 (72%), Positives = 114/132 (86%)

Query: 24  IKPVYRPKIVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSA 83
           ++P+ +PKIVKKR K FIRHQSDRY K+ R+WRKP+GIDNRVRRRFKGQ LMPNIGYGS 
Sbjct: 4   LRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSN 63

Query: 84  KKTRHMLPNHFLKVVVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLT 143
           KKT+HMLP+ F K +VHNVKELEVL+M N+ YCAEI H VSSK R+ IV+RA QL+IR+T
Sbjct: 64  KKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVT 123

Query: 144 NGNARIRTEENE 155
           N NAR+R+EENE
Sbjct: 124 NPNARLRSEENE 135

>3u5e_e 60S ribosomal protein L32, 60S ribosomal protein L31-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_h 1s1i_0 3izs_h 3o5h_b 3o58_b 3u5i_e 3jyw_0 Length = 130

 Score =  145 bits (366), Expect = 7e-46
 Identities = 62/129 (48%), Positives = 82/129 (63%)

Query: 24  IKPVYRPKIVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSA 83
           +  +  PKIVKK  K F RH SDRY ++  +WRK KGID+ VRRRF+G    P IGYGS 
Sbjct: 1   MASLPHPKIVKKHTKKFKRHHSDRYHRVAENWRKQKGIDSVVRRRFRGNISQPKIGYGSN 60

Query: 84  KKTRHMLPNHFLKVVVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLT 143
           KKT+ + P+     +V NVK+LE L M  + Y AEI H +S+K R  I+ RA+ L I++T
Sbjct: 61  KKTKFLSPSGHKTFLVANVKDLETLTMHTKTYAAEIAHNISAKNRVVILARAKALGIKVT 120

Query: 144 NGNARIRTE 152
           N   R+  E
Sbjct: 121 NPKGRLALE 129

>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ... Length = 241

 Score =  134 bits (337), Expect = 3e-40
 Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 2/111 (1%)

Query: 34  KKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNH 93
           +  +  F R    + K++  SWRKP+G  ++ RR  KG+      G+ S    R   P+ 
Sbjct: 123 RVGKPQFNRQDHHKKKRVSTSWRKPRGQLSKQRRGIKGKGDTVEAGFRSPTAVRGKHPSG 182

Query: 94  FLKVVVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTN 144
           F +V VHNV +LE   +        I   V ++KR  I + A+   IR+ N
Sbjct: 183 FEEVRVHNVDDLE--GVDGDTEAVRIASKVGARKRERIEEEAEDAGIRVLN 231

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	155
4a17_X	134	RPL32, 60S ribosomal protein L32; eukaryotic ribos	100.0
3u5e_e	130	60S ribosomal protein L32, 60S ribosomal protein L	100.0
3iz5_h	133	60S ribosomal protein L32 (L32E); eukaryotic ribos	100.0
2zkr_y	135	60S ribosomal protein L32; protein-RNA complex, 60	100.0
3j21_b	130	PFEL32, 50S ribosomal protein L32E; archaea, archa	100.0
1vq8_Y	241	50S ribosomal protein L32E; ribosome 50S, protein-	100.0

>4a17_X RPL32, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_X 4a1c_X 4a1e_X

Probab=100.00  E-value=1.7e-72  Score=436.52  Aligned_cols=134  Identities=50%  Similarity=0.918  Sum_probs=124.7

Q ss_pred             eeecCCCCCccccccCCCcccccccccccccccccCCccCCcchhhhccCCcCCCCCCCCCCccccccCCCCceEEEEec
Q psy14535         22 MSIKPVYRPKIVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHN  101 (155)
Q Consensus        22 ~~~~pl~k~kivKKr~~kF~R~~sdr~~rvk~sWRKPrGiDnkvRrr~kG~~~mP~iGYgS~k~tR~l~PsGf~~vlV~N  101 (155)
                      |+++||++|+||||+|++|+|||||+|++|++|||||+||||+||++|+|+++||+||||||++|||||||||++|+|||
T Consensus         1 ~~~~~~~~~kivKkrtkkF~R~~sdry~ri~~~WRKPrGiDnrvRrrfKG~~~mp~iGYgS~kktR~l~PsGf~~~lV~N   80 (134)
T 4a17_X            1 MAIKPVAHKKIIKKRTKKFVRFESEDFAKLDSSWRRPRGIDNRVRRRFRGQRRMAKIGFASDAATKHLLPNGFKKFLIRN   80 (134)
T ss_dssp             --CCCCCCCCCCCSCCSCCCCTTTTTCSSSCCSCCCCCCSSCTGGGTCTTSCCCCCSTTSCCTTTTTBCTTSCEEEEECS
T ss_pred             CCccCCCCCcceeccCCCccccccccccccCCCCCCCCCcccchhhcccCccCCCccCcCCChhhcccCCCCCeEEEeCC
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHhhcCcceEEEeecCCccccHHHHHHHHHHcCCceecCCcceeecccC
Q psy14535        102 VKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNGNARIRTEENE  155 (155)
Q Consensus       102 vkeLe~L~m~n~~~aaeIAh~Vg~kkR~~I~erA~el~ikV~N~~arl~~ee~e  155 (155)
                      |+|||+|+|||++|||||||+||++||++|+|+|+||||+||||+|||++|||.
T Consensus        81 vkeLe~Llm~n~~~aaeIAh~Vs~rkR~~IverA~qL~irV~Np~arl~~ee~~  134 (134)
T 4a17_X           81 PADLEILLMNNRTYCGEIAHNISAQVKAALVKRAAELGVRLTNANAKVKVQESA  134 (134)
T ss_dssp             SHHHHHHHHHTTTEEEEECTTSCHHHHHHHHHHHHHHTCCBSSCCCC-------
T ss_pred             HHHHHHHhcCCcccEEEEecCcccccHHHHHHHHHHhCCcccCCcccceecccC
Confidence            999999999999999999999999999999999999999999999999999983

>3u5e_e 60S ribosomal protein L32, 60S ribosomal protein L31-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_h 1s1i_0 3izs_h 3o5h_b 3o58_b 3u5i_e 4b6a_e 3jyw_0

Probab=100.00  E-value=2.7e-71  Score=427.98  Aligned_cols=128  Identities=48%  Similarity=0.793  Sum_probs=125.6

Q ss_pred             CCCCCccccccCCCcccccccccccccccccCCccCCcchhhhccCCcCCCCCCCCCCccccccCCCCceEEEEechhhh
Q psy14535         26 PVYRPKIVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHNVKEL  105 (155)
Q Consensus        26 pl~k~kivKKr~~kF~R~~sdr~~rvk~sWRKPrGiDnkvRrr~kG~~~mP~iGYgS~k~tR~l~PsGf~~vlV~NvkeL  105 (155)
                      ||++|+||||+|++|+|||||+|++|++|||||+||||+||++|+|+++||+||||||++|||||||||++|+||||+||
T Consensus         3 ~~~~~kivKkrtkkF~R~~sdry~ri~~~WRKPrGiDnrvRrrfkG~~~mp~iGYgS~kktr~l~PsGf~~~lV~NvkeL   82 (130)
T 3u5e_e            3 SLPHPKIVKKHTKKFKRHHSDRYHRVAENWRKQKGIDSVVRRRFRGNISQPKIGYGSNKKTKFLSPSGHKTFLVANVKDL   82 (130)
T ss_dssp             CCCCSCCCCSCCSCCCCTTTTTCTTSCSSCCCCCCSSCTTTTTCTTSCCCCCGGGCCCTTTTTBCTTSCEEEEESSHHHH
T ss_pred             CCCCCceeeccCCCccccccccccccCCCCCCCCCcccchhccccCCcCCCcCCCCCChhhcccCCCCCceEEeCCHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCcceEEEeecCCccccHHHHHHHHHHcCCceecCCcceeecc
Q psy14535        106 EVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNGNARIRTEE  153 (155)
Q Consensus       106 e~L~m~n~~~aaeIAh~Vg~kkR~~I~erA~el~ikV~N~~arl~~ee  153 (155)
                      |+|+|||++|||||||+||++||++|+|+|+||||+||||+|||++||
T Consensus        83 e~Llm~n~~~~aeIAh~Vs~rkR~~IverA~ql~irV~Np~arl~~ee  130 (130)
T 3u5e_e           83 ETLTMHTKTYAAEIAHNISAKNRVVILARAKALGIKVTNPKGRLALEA  130 (130)
T ss_dssp             GGGTTCTTTEEEEECTTCCHHHHHHHHHHHHHHTCCBSCTTTTCCC--
T ss_pred             HHHhcCCcccEEEEecccccccHHHHHHHHHHhCCcccCCCccccccC
Confidence            999999999999999999999999999999999999999999999997

>2zkr_y 60S ribosomal protein L32; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=100.00  E-value=1.2e-71  Score=432.18  Aligned_cols=135  Identities=71%  Similarity=1.136  Sum_probs=59.6

Q ss_pred             eeeecCCCCCccccccCCCcccccccccccccccccCCccCCcchhhhccCCcCCCCCCCCCCccccccCCCCceEEEEe
Q psy14535         21 TMSIKPVYRPKIVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVH  100 (155)
Q Consensus        21 ~~~~~pl~k~kivKKr~~kF~R~~sdr~~rvk~sWRKPrGiDnkvRrr~kG~~~mP~iGYgS~k~tR~l~PsGf~~vlV~  100 (155)
                      +|++.||++++|+||++++|+|||||+|+||++|||||+||||+||++|+|+++||+||||||++|||||||||++|+||
T Consensus         1 ~m~~~~~~~~kivKkr~~kF~R~~sdry~rl~~~WRKPrGiDnrvRrrfkG~~~mp~iGYgS~k~tR~l~PsGf~~~lV~   80 (135)
T 2zkr_y            1 MAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVH   80 (135)
T ss_dssp             ----CTTTTTSSSSSCCCC-CCTTTTTCTTSCC-CCCCCCSSCTTTCC-CCSCCCSCTTSCCCTTCC-------------
T ss_pred             CCCCcCCCCccccccCCCcccCcchhhccccCccccCCCCCcccceeeccCCCCCCcccCCCChhhcccCCCCCeEEEeC
Confidence            47788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhHHHhhcCcceEEEeecCCccccHHHHHHHHHHcCCceecCCcceeecccC
Q psy14535        101 NVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNGNARIRTEENE  155 (155)
Q Consensus       101 NvkeLe~L~m~n~~~aaeIAh~Vg~kkR~~I~erA~el~ikV~N~~arl~~ee~e  155 (155)
                      ||+|||+|+|||++|||||||+||++||++|+|+|+||||+||||+|||++||+|
T Consensus        81 NvkeLe~Llm~n~~~aaeIah~Vs~kKR~~IverA~eL~IkV~N~~arl~~~e~e  135 (135)
T 2zkr_y           81 NVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE  135 (135)
T ss_dssp             -------------------------------------------------------
T ss_pred             CHHHHHHHhcCCCceEEEEecccccccHHHHHHHHHHhCCeeeCCccccchhccC
Confidence            9999999999999999999999999999999999999999999999999999987

>3j21_b PFEL32, 50S ribosomal protein L32E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=2.9e-60  Score=366.52  Aligned_cols=114  Identities=40%  Similarity=0.728  Sum_probs=110.7

Q ss_pred             cccccCCCcccccccccccccc--cccCCccCCcchhhhccCCcCCCCCCCCCCccccccCCCCceEEEEechhhhHHHh
Q psy14535         32 IVKKRRKVFIRHQSDRYKKLHR--SWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHNVKELEVLM  109 (155)
Q Consensus        32 ivKKr~~kF~R~~sdr~~rvk~--sWRKPrGiDnkvRrr~kG~~~mP~iGYgS~k~tR~l~PsGf~~vlV~NvkeLe~L~  109 (155)
                      .+|+++|+|+|||||+|++|++  |||||+||||+||++|+|+++||+||||||++|||||||||++|+||||+|||+| 
T Consensus        15 ~~k~k~pkF~R~~sdr~~ri~~~~~WRKPrGiDnrvRrrfKG~~~mp~iGYgS~kktR~l~PsGf~~~lV~NvkeLe~L-   93 (130)
T 3j21_b           15 RLKRKKPRFLRQEWWRYPKFKNDPKWRRPKGIDSKMRLKLKGKPRSPSIGWSSPKLVRGLHPSGYEEVLVHNVKELEAL-   93 (130)
T ss_dssp             HHHHCCCCCCCSCCSSCSSSCSSCCCCCCCCSSCHHHHTCTTSCCCCCGGGCCCTTTTTCCTTSCEEEEECSTTTTTTC-
T ss_pred             HHhhcCCCeeccccccceecCCCCCCCCCCCcccchhccccCCCCCCccCCCCcccccccCCCCCceEEecCHHHHHhh-
Confidence            4678899999999999999999  9999999999999999999999999999999999999999999999999999999 


Q ss_pred             hcCcceEEEeecCCccccHHHHHHHHHHcCCceecCCc
Q psy14535        110 MQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNGNA  147 (155)
Q Consensus       110 m~n~~~aaeIAh~Vg~kkR~~I~erA~el~ikV~N~~a  147 (155)
                       ||++|||||||+||++||++|+|+|+||||+||||+.
T Consensus        94 -~~~~~~aeIAh~Vs~rkR~~IverA~qL~ikV~Np~~  130 (130)
T 3j21_b           94 -DPKRQAARIAHTVGKKKRIEIIKRAEELGIKVLNPRV  130 (130)
T ss_dssp             -CTTTEEEEECTTCCHHHHHHHHHHHHHHTCCCCCCC-
T ss_pred             -CCCCceEEEecCcccccHHHHHHHHHHhCCcccCCCC
Confidence             9999999999999999999999999999999999973

>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...

Probab=100.00  E-value=1.5e-42  Score=288.16  Aligned_cols=112  Identities=30%  Similarity=0.469  Sum_probs=109.8

Q ss_pred             cccCCCcccccccccccccccccCCccCCcchhhhccCCcCCCCCCCCCCccccccCCCCceEEEEechhhhHHHhhcCc
Q psy14535         34 KKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHNVKELEVLMMQNR  113 (155)
Q Consensus        34 KKr~~kF~R~~sdr~~rvk~sWRKPrGiDnkvRrr~kG~~~mP~iGYgS~k~tR~l~PsGf~~vlV~NvkeLe~L~m~n~  113 (155)
                      ++++|+|+||+||+|+||+++||+|+||||+||++|+|+++||+|||+||+++|++|||||+.|+||||+||++|  +|+
T Consensus       123 ~~~~~efvr~d~d~~~~~~~~wrkP~g~d~~vr~~f~g~~~~~~ig~~s~~k~r~~lp~G~~~~~v~n~~dL~~l--~~~  200 (241)
T 1vq8_Y          123 RVGKPQFNRQDHHKKKRVSTSWRKPRGQLSKQRRGIKGKGDTVEAGFRSPTAVRGKHPSGFEEVRVHNVDDLEGV--DGD  200 (241)
T ss_dssp             HHCCCCCCCTTGGGCTTSCSSCCCCCCTTCTTTTTCTTSCCCCCGGGCCCTTTTTCCTTSCEEEEESSGGGGTTC--CTT
T ss_pred             ccCCCCeeccchhheeecccCcCCCCCccHHHHHHHhCCCCCCccccCCCCceEEECCCCCEeeeccCHhHhhcc--CcH
Confidence            567899999999999999999999999999999999999999999999999999999999999999999999999  899


Q ss_pred             ceEEEeecCCccccHHHHHHHHHHcCCceecCCc
Q psy14535        114 KYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNGNA  147 (155)
Q Consensus       114 ~~aaeIAh~Vg~kkR~~I~erA~el~ikV~N~~a  147 (155)
                      +||++|+|+||+|+|.+|+++|+|+||+||||++
T Consensus       201 ~~~a~i~~~tGskkh~~i~~~A~~~gikv~n~~~  234 (241)
T 1vq8_Y          201 TEAVRIASKVGARKRERIEEEAEDAGIRVLNPTY  234 (241)
T ss_dssp             TEEEEECTTSCHHHHHHHHHHHHHTTCCBSSCCE
T ss_pred             HHHHHHHHHhccHhHHHHHHHHHHcCCcccCCCc
Confidence            9999999999999999999999999999999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	155
d1vqoy1	142	c.9.2.1 (Y:95-236) Ribosomal protein L32e {Archaeo	2e-47

>d1vqoy1 c.9.2.1 (Y:95-236) Ribosomal protein L32e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 142

class: Alpha and beta proteins (a/b)
fold: Barstar-like
superfamily: Ribosomal protein L32e
family: Ribosomal protein L32e
domain: Ribosomal protein L32e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  148 bits (376), Expect = 2e-47
 Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 2/111 (1%)

Query: 34  KKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNH 93
           +  +  F R    + K++  SWRKP+G  ++ RR  KG+      G+ S    R   P+ 
Sbjct: 28  RVGKPQFNRQDHHKKKRVSTSWRKPRGQLSKQRRGIKGKGDTVEAGFRSPTAVRGKHPSG 87

Query: 94  FLKVVVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTN 144
           F +V VHNV +LE   +        I   V ++KR  I + A+   IR+ N
Sbjct: 88  FEEVRVHNVDDLE--GVDGDTEAVRIASKVGARKRERIEEEAEDAGIRVLN 136

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	155
d1vqoy1	142	Ribosomal protein L32e {Archaeon Haloarcula marism	100.0

>d1vqoy1 c.9.2.1 (Y:95-236) Ribosomal protein L32e {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: Barstar-like
superfamily: Ribosomal protein L32e
family: Ribosomal protein L32e
domain: Ribosomal protein L32e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=5.2e-55  Score=339.45  Aligned_cols=112  Identities=30%  Similarity=0.469  Sum_probs=108.5

Q ss_pred             ccccCCCcccccccccccccccccCCccCCcchhhhccCCcCCCCCCCCCCccccccCCCCceEEEEechhhhHHHhhcC
Q psy14535         33 VKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHNVKELEVLMMQN  112 (155)
Q Consensus        33 vKKr~~kF~R~~sdr~~rvk~sWRKPrGiDnkvRrr~kG~~~mP~iGYgS~k~tR~l~PsGf~~vlV~NvkeLe~L~m~n  112 (155)
                      .++++|+|.|||||+|+||+++||||+||||+||++|+|+++||+||||||++|||||||||++|+|||++|||.|  +|
T Consensus        27 ~k~~kp~F~R~~s~r~~Rl~~~WRkPrGiDnkvRr~~KG~~~mp~iGYgspk~~Rgl~PsGf~~vlV~Nv~dLe~l--~~  104 (142)
T d1vqoy1          27 HRVGKPQFNRQDHHKKKRVSTSWRKPRGQLSKQRRGIKGKGDTVEAGFRSPTAVRGKHPSGFEEVRVHNVDDLEGV--DG  104 (142)
T ss_dssp             HHHCCCCCCCTTGGGCTTSCSSCCCCCCTTCTTTTTCTTSCCCCCGGGCCCTTTTTCCTTSCEEEEESSGGGGTTC--CT
T ss_pred             HhccCCCEeecchhhhccccccccCCCCCcchhhccccCCCCCCccccCccHhhcccCcCcCEEEEecCHHHHHhh--CC
Confidence            3557899999999999999999999999999999999999999999999999999999999999999999999988  78


Q ss_pred             cceEEEeecCCccccHHHHHHHHHHcCCceecCC
Q psy14535        113 RKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNGN  146 (155)
Q Consensus       113 ~~~aaeIAh~Vg~kkR~~I~erA~el~ikV~N~~  146 (155)
                      ++|||+|||+||+|||.+|+++|+||||+|+||.
T Consensus       105 ~~~a~~Ia~~Vg~kKR~~Ii~rA~elgikV~NPk  138 (142)
T d1vqoy1         105 DTEAVRIASKVGARKRERIEEEAEDAGIRVLNPT  138 (142)
T ss_dssp             TTEEEEECTTSCHHHHHHHHHHHHHTTCCBSSCC
T ss_pred             CceEEEEEcccchhhHHHHHHHHHHhCCEecCCc
Confidence            9999999999999999999999999999999994