Diaphorina citri psyllid: psy14552


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290
EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIGAKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGNEANYK
ccccEEEEEEcccEEEEEEccEEEEECcccccccccEEEEEEccccCEEEECcccEEEEECcccccCECccccccccEEEEEEEcccEEEEEEEccCEEEEECcccccccccccccEEEEEEcccEEEEEEcccEEEEEEEccccccEEEEEEEEEcccEEEEEEccccccccEEEcEEEEEEEccEEEEEEccccccCEEEEEccccccccEEEEEEEcccccccccccccccccccEEEEEEEccccEEEEEEEcccccccccCEEECcccccEEEEEEEcccccccc
EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIGAKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIE****************TLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQG******
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EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIGAKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGNEANYK

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Splicing factor 3B subunit 3 Subunit of the splicing factor SF3B required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex. Belongs also to the minor U12-dependent spliceosome, which is involved in the splicing of rare class of nuclear pre-mRNA intron.confidentQ15393
Splicing factor 3B subunit 3 Subunit of the splicing factor SF3B required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex. Belongs also to the minor U12-dependent spliceosome, which is involved in the splicing of rare class of nuclear pre-mRNA intron.confidentQ1LVE8
Splicing factor 3B subunit 3 Subunit of the splicing factor SF3B required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex. Belongs also to the minor U12-dependent spliceosome, which is involved in the splicing of rare class of nuclear pre-mRNA intron.confidentQ921M3

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0071011 [CC]precatalytic spliceosomeprobableGO:0005575, GO:0032991, GO:0043231, GO:0005634, GO:0044464, GO:0005623, GO:0030529, GO:0044446, GO:0043229, GO:0044428, GO:0044422, GO:0044424, GO:0005622, GO:0043227, GO:0043226, GO:0005681
GO:0071013 [CC]catalytic step 2 spliceosomeprobableGO:0005575, GO:0032991, GO:0043231, GO:0005634, GO:0044464, GO:0005623, GO:0030529, GO:0044446, GO:0043229, GO:0044428, GO:0044422, GO:0044424, GO:0005622, GO:0043227, GO:0043226, GO:0005681
GO:0005689 [CC]U12-type spliceosomal complexprobableGO:0005575, GO:0032991, GO:0043231, GO:0005634, GO:0044464, GO:0005623, GO:0030529, GO:0044446, GO:0043229, GO:0044428, GO:0044422, GO:0044424, GO:0005622, GO:0043227, GO:0043226, GO:0005681
GO:0009987 [BP]cellular processprobableGO:0008150

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 3EI3, chain A
Confidence level:very confident
Coverage over the Query: 1-101,140-219,236-289
View the alignment between query and template
View the model in PyMOL
Template: 3EI3, chain A
Confidence level:confident
Coverage over the Query: 77-218
View the alignment between query and template
View the model in PyMOL
Template: 3JRO, chain A
Confidence level:probable
Coverage over the Query: 86-223,235-258
View the alignment between query and template
View the model in PyMOL