Psyllid ID: psy14552
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 290 | 2.2.26 [Sep-21-2011] | |||||||
| Q5RBI5 | 1217 | Splicing factor 3B subuni | yes | N/A | 0.837 | 0.199 | 0.547 | 4e-79 | |
| Q15393 | 1217 | Splicing factor 3B subuni | yes | N/A | 0.837 | 0.199 | 0.547 | 4e-79 | |
| A0JN52 | 1217 | Splicing factor 3B subuni | yes | N/A | 0.837 | 0.199 | 0.547 | 4e-79 | |
| Q921M3 | 1217 | Splicing factor 3B subuni | yes | N/A | 0.837 | 0.199 | 0.547 | 4e-79 | |
| Q1LVE8 | 1217 | Splicing factor 3B subuni | yes | N/A | 0.837 | 0.199 | 0.547 | 7e-79 | |
| Q4WLI5 | 1225 | Pre-mRNA-splicing factor | yes | N/A | 0.810 | 0.191 | 0.386 | 2e-50 | |
| Q5B1X8 | 1209 | Pre-mRNA-splicing factor | yes | N/A | 0.810 | 0.194 | 0.379 | 3e-48 | |
| Q52E49 | 1216 | Pre-mRNA-splicing factor | N/A | N/A | 0.793 | 0.189 | 0.371 | 6e-44 | |
| Q7RYR4 | 1209 | Pre-mRNA-splicing factor | N/A | N/A | 0.789 | 0.189 | 0.367 | 2e-43 | |
| Q4PGM6 | 1221 | Pre-mRNA-splicing factor | N/A | N/A | 0.834 | 0.198 | 0.365 | 6e-42 |
| >sp|Q5RBI5|SF3B3_PONAB Splicing factor 3B subunit 3 OS=Pongo abelii GN=SF3B3 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 295 bits (754), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 157/287 (54%), Positives = 193/287 (67%), Gaps = 44/287 (15%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
EFDAYI+VSF NATLVLSIGETVEEV+ SGF GTTPTL CS +GD+++VQVYPDGIRHI
Sbjct: 469 EFDAYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIR 528
Query: 61 AKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRC 120
A DK+ V++ K KK IV+C
Sbjct: 529 A-------------DKR----------------------------VNEWKTPGKKTIVKC 547
Query: 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLA 180
AVNQRQ+VIAL GG L+YFEM P +G L+E +E +M ++V+CM+L+N P GEQ SRFLA
Sbjct: 548 AVNQRQVVIALTGGELVYFEMDP-SGQLNEYTERKEMSADVVCMSLANVPPGEQRSRFLA 606
Query: 181 VGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLY 240
VGL DNTVR+ISL P DCL+ ++Q LP ESL ++EMG ++ DE ++G LY
Sbjct: 607 VGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTE--KQDELGERGSIGFLY 664
Query: 241 LYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGNEA 287
L +GLQNG LLR V+D +GDLSD R RYLGSRPVKLF++R QG EA
Sbjct: 665 LNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEA 711
|
Subunit of the splicing factor SF3B required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex. Belongs also to the minor U12-dependent spliceosome, which is involved in the splicing of rare class of nuclear pre-mRNA intron. Pongo abelii (taxid: 9601) |
| >sp|Q15393|SF3B3_HUMAN Splicing factor 3B subunit 3 OS=Homo sapiens GN=SF3B3 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 294 bits (753), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 157/287 (54%), Positives = 193/287 (67%), Gaps = 44/287 (15%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
EFDAYI+VSF NATLVLSIGETVEEV+ SGF GTTPTL CS +GD+++VQVYPDGIRHI
Sbjct: 469 EFDAYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIR 528
Query: 61 AKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRC 120
A DK+ V++ K KK IV+C
Sbjct: 529 A-------------DKR----------------------------VNEWKTPGKKTIVKC 547
Query: 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLA 180
AVNQRQ+VIAL GG L+YFEM P +G L+E +E +M ++V+CM+L+N P GEQ SRFLA
Sbjct: 548 AVNQRQVVIALTGGELVYFEMDP-SGQLNEYTERKEMSADVVCMSLANVPPGEQRSRFLA 606
Query: 181 VGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLY 240
VGL DNTVR+ISL P DCL+ ++Q LP ESL ++EMG ++ DE ++G LY
Sbjct: 607 VGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTE--KQDELGERGSIGFLY 664
Query: 241 LYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGNEA 287
L +GLQNG LLR V+D +GDLSD R RYLGSRPVKLF++R QG EA
Sbjct: 665 LNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEA 711
|
Subunit of the splicing factor SF3B required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex. Belongs also to the minor U12-dependent spliceosome, which is involved in the splicing of rare class of nuclear pre-mRNA intron. Homo sapiens (taxid: 9606) |
| >sp|A0JN52|SF3B3_BOVIN Splicing factor 3B subunit 3 OS=Bos taurus GN=SF3B3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 294 bits (753), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 157/287 (54%), Positives = 193/287 (67%), Gaps = 44/287 (15%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
EFDAYI+VSF NATLVLSIGETVEEV+ SGF GTTPTL CS +GD+++VQVYPDGIRHI
Sbjct: 469 EFDAYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIR 528
Query: 61 AKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRC 120
A DK+ V++ K KK IV+C
Sbjct: 529 A-------------DKR----------------------------VNEWKTPGKKTIVKC 547
Query: 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLA 180
AVNQRQ+VIAL GG L+YFEM P +G L+E +E +M ++V+CM+L+N P GEQ SRFLA
Sbjct: 548 AVNQRQVVIALTGGELVYFEMDP-SGQLNEYTERKEMSADVVCMSLANVPPGEQRSRFLA 606
Query: 181 VGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLY 240
VGL DNTVR+ISL P DCL+ ++Q LP ESL ++EMG ++ DE ++G LY
Sbjct: 607 VGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTE--KQDELGERGSIGFLY 664
Query: 241 LYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGNEA 287
L +GLQNG LLR V+D +GDLSD R RYLGSRPVKLF++R QG EA
Sbjct: 665 LNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEA 711
|
Subunit of the splicing factor SF3B required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex. Belongs also to the minor U12-dependent spliceosome, which is involved in the splicing of rare class of nuclear pre-mRNA intron. Bos taurus (taxid: 9913) |
| >sp|Q921M3|SF3B3_MOUSE Splicing factor 3B subunit 3 OS=Mus musculus GN=Sf3b3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 294 bits (753), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 157/287 (54%), Positives = 193/287 (67%), Gaps = 44/287 (15%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
EFDAYI+VSF NATLVLSIGETVEEV+ SGF GTTPTL CS +GD+++VQVYPDGIRHI
Sbjct: 469 EFDAYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIR 528
Query: 61 AKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRC 120
A DK+ V++ K KK IV+C
Sbjct: 529 A-------------DKR----------------------------VNEWKTPGKKTIVKC 547
Query: 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLA 180
AVNQRQ+VIAL GG L+YFEM P +G L+E +E +M ++V+CM+L+N P GEQ SRFLA
Sbjct: 548 AVNQRQVVIALTGGELVYFEMDP-SGQLNEYTERKEMSADVVCMSLANVPPGEQRSRFLA 606
Query: 181 VGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLY 240
VGL DNTVR+ISL P DCL+ ++Q LP ESL ++EMG ++ DE ++G LY
Sbjct: 607 VGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTE--KQDELGERGSIGFLY 664
Query: 241 LYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGNEA 287
L +GLQNG LLR V+D +GDLSD R RYLGSRPVKLF++R QG EA
Sbjct: 665 LNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEA 711
|
Subunit of the splicing factor SF3B required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex. Belongs also to the minor U12-dependent spliceosome, which is involved in the splicing of rare class of nuclear pre-mRNA intron. Mus musculus (taxid: 10090) |
| >sp|Q1LVE8|SF3B3_DANRE Splicing factor 3B subunit 3 OS=Danio rerio GN=sf3b3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 293 bits (751), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 157/287 (54%), Positives = 192/287 (66%), Gaps = 44/287 (15%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
EFDAYI+VSF NATLVLSIGETVEEV+ SGF GTTPTL CS +G++++VQVYPDGIRHI
Sbjct: 469 EFDAYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIR 528
Query: 61 AKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRC 120
A DK+ V++ K KK I+RC
Sbjct: 529 A-------------DKR----------------------------VNEWKTPGKKTIIRC 547
Query: 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLA 180
AVNQRQ+VIAL GG L+YFEM P +G L+E +E +M ++V+CM+L+N P GEQ SRFLA
Sbjct: 548 AVNQRQVVIALTGGELVYFEMDP-SGQLNEYTERKEMSADVVCMSLANVPPGEQRSRFLA 606
Query: 181 VGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLY 240
VGL DNTVR+ISL P DCL+ ++Q LP ESL ++EMG + DE T+G LY
Sbjct: 607 VGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGVE--KQDELGEKGTIGFLY 664
Query: 241 LYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGNEA 287
L +GLQNG LLR V+D +GDLSD R RYLGSRPVKLF++R QG EA
Sbjct: 665 LNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEA 711
|
Subunit of the splicing factor SF3B required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex. Belongs also to the minor U12-dependent spliceosome, which is involved in the splicing of rare class of nuclear pre-mRNA intron. Danio rerio (taxid: 7955) |
| >sp|Q4WLI5|RSE1_ASPFU Pre-mRNA-splicing factor rse1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rse1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 199 bits (506), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 111/287 (38%), Positives = 161/287 (56%), Gaps = 52/287 (18%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
EFDAYI++SF+N TLVLSIGETVEEV+ +GF T PTL +G++S++QV+P GIRHI
Sbjct: 485 EFDAYIILSFANGTLVLSIGETVEEVTDTGFLSTAPTLAVQQLGEDSLIQVHPRGIRHI- 543
Query: 61 AKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRC 120
++D++ V++ + IV
Sbjct: 544 -------LADRR---------------------------------VNEWPAPQHRSIVAA 563
Query: 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLA 180
A N+RQ+ +AL G ++YFEM + G L E E QM V C++L P G S FLA
Sbjct: 564 ATNERQVAVALSSGEIVYFEMDAD-GTLAEYDERRQMSGTVTCLSLGEVPEGRVRSSFLA 622
Query: 181 VGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLY 240
VG D+TVR++SL P L+ K++Q L +L ++ M +D +G TL Y
Sbjct: 623 VGCDDSTVRILSLDPDSTLENKSVQALTSAPSALNIMSM-------ADSSSGGTTL---Y 672
Query: 241 LYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGNEA 287
L++GL +G LR V+D+ +G+LSD R R+LG++PVKLF++ +G A
Sbjct: 673 LHIGLYSGVYLRTVLDEVTGELSDTRTRFLGAKPVKLFRVSVKGQTA 719
|
Involved in pre-mRNA splicing and cell cycle control. Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879) |
| >sp|Q5B1X8|RSE1_EMENI Pre-mRNA-splicing factor rse1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rse1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 192 bits (487), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 109/287 (37%), Positives = 158/287 (55%), Gaps = 52/287 (18%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
EFDAYIV+SF+N TLVLSIGETVEEV+ +GF + PTL +G++S++Q++P GIRHI
Sbjct: 485 EFDAYIVLSFANGTLVLSIGETVEEVTDTGFLSSAPTLAVQQLGEDSLIQIHPRGIRHI- 543
Query: 61 AKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRC 120
++D++ V++ + IV
Sbjct: 544 -------LADRR---------------------------------VNEWPAPQHRSIVAA 563
Query: 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLA 180
A N+RQ+ +AL G ++YFE+ + G L E E QM V C++L P G S FLA
Sbjct: 564 ATNERQVAVALSSGEIVYFELDAD-GSLAEYDERRQMSGTVTCLSLGEVPEGRVRSSFLA 622
Query: 181 VGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLY 240
VG D+TVR++SL P L+ K++Q L +L +I M +D +G T LY
Sbjct: 623 VGCDDSTVRILSLDPDTTLENKSVQALTAAPSALNIIAM-------ADSSSGGTT---LY 672
Query: 241 LYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGNEA 287
L++GL +G LR +D+ +G+LSD R R+LGS+ VKLF++ G A
Sbjct: 673 LHIGLHSGVYLRTALDEVTGELSDTRTRFLGSKAVKLFQVSVTGQTA 719
|
Involved in pre-mRNA splicing and cell cycle control. Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321) |
| >sp|Q52E49|RSE1_MAGO7 Pre-mRNA-splicing factor RSE1 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=RSE1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 177 bits (450), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 105/283 (37%), Positives = 151/283 (53%), Gaps = 53/283 (18%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
E+DAYIV+SF+N TLVLSIGETVEEVS +GF + PTL +GD+ +VQV+P GIRHI
Sbjct: 488 EYDAYIVLSFTNGTLVLSIGETVEEVSDTGFLSSVPTLAVQQLGDDGLVQVHPKGIRHI- 546
Query: 61 AKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRC 120
R V V++ + IV
Sbjct: 547 --------------------RNGV---------------------VNEWSSPQHRSIVAA 565
Query: 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLA 180
A N+RQ+ +AL G ++YFEM + G L E E +M V ++L P G S +LA
Sbjct: 566 ATNERQVAVALSSGEIVYFEMDTD-GSLAEYDEKKEMFGTVTSLSLGEVPEGRLRSSYLA 624
Query: 181 VGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLY 240
VG D TVR++SL P+ L+ K++Q L +L ++ M D +G TL Y
Sbjct: 625 VGCDDCTVRILSLDPESTLESKSVQALTAAPSALSIMSM-------EDSSSGGTTL---Y 674
Query: 241 LYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQ 283
L++GL +G LR V+D+ +G+L+D R ++LG + V+LF++ Q
Sbjct: 675 LHIGLNSGVYLRTVLDEVTGELTDTRQKFLGPKAVRLFQVSVQ 717
|
Involved in pre-mRNA splicing and cell cycle control. Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) (taxid: 242507) |
| >sp|Q7RYR4|RSE1_NEUCR Pre-mRNA-splicing factor rse-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rse-1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 176 bits (446), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/283 (36%), Positives = 150/283 (53%), Gaps = 54/283 (19%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
++DAYIV+SF+N TLVLSIGETVEEVS SGF T PTL MG++ ++QV+P GIRHI
Sbjct: 488 QYDAYIVLSFTNGTLVLSIGETVEEVSDSGFLTTAPTLAVQQMGEDGLIQVHPKGIRHI- 546
Query: 61 AKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRC 120
+QG V++ + IV
Sbjct: 547 --------------------------------VQGR---------VNEWPAPQHRSIVAA 565
Query: 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLA 180
N+ Q+VIAL G ++YFEM + G L E E +M V +++ P G + S FLA
Sbjct: 566 TANENQVVIALSSGEIVYFEMDSD-GSLAEYDEKKEMSGTVTSLSVGQVPEGLKRSSFLA 624
Query: 181 VGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLY 240
VG D TVR++SL P L+ K++Q L +L ++ M S S+ LY
Sbjct: 625 VGCDDCTVRILSLDPDSTLEMKSIQALTAAPSALSIMSMEDSFGGST-----------LY 673
Query: 241 LYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQ 283
L++GL +G LR V+D+ +G+L+D R ++LG +P +LF++ Q
Sbjct: 674 LHIGLHSGVYLRTVLDEVTGELTDTRQKFLGPKPTRLFQVSVQ 716
|
Involved in pre-mRNA splicing and cell cycle control. Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110) |
| >sp|Q4PGM6|RSE1_USTMA Pre-mRNA-splicing factor RSE1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=RSE1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 171 bits (433), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 105/287 (36%), Positives = 154/287 (53%), Gaps = 45/287 (15%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
E+D+YI++SF N TLVLSIGET+EEVS SGF ++ TL +G ++++QV+P GIRH+
Sbjct: 486 EYDSYIILSFVNGTLVLSIGETIEEVSDSGFLTSSSTLAVQQLGQDALLQVHPHGIRHV- 544
Query: 61 AKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRC 120
+V +N+ +L GR + IV
Sbjct: 545 ------------------LVDKQINE-WATPSLPNGR----------------QTTIVAT 569
Query: 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLA 180
N+RQ+V+AL L+YFE+ + G L+E E M + VL M++ + P G Q + +LA
Sbjct: 570 CTNERQVVVALSSNELVYFELDMD-GQLNEYQERKAMGAGVLTMSMPDCPEGRQRTPYLA 628
Query: 181 VGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLY 240
VG D+TVR+ISL P L ++Q L A S+ M EM D T A +
Sbjct: 629 VGCDDSTVRIISLEPNSTLASISIQALTAPASSICMAEM--LDATIDRNHA------TTF 680
Query: 241 LYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGNEA 287
+ +GLQNG LLR ++D +G L+D R R+LGS+ V+L + + G A
Sbjct: 681 VNIGLQNGVLLRTILDAVTGQLTDTRTRFLGSKAVRLIRTKVHGQAA 727
|
Involved in pre-mRNA splicing and cell cycle control. Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 290 | ||||||
| 328717412 | 1218 | PREDICTED: splicing factor 3B subunit 3- | 0.837 | 0.199 | 0.576 | 2e-81 | |
| 31213215 | 1217 | AGAP005549-PA [Anopheles gambiae str. PE | 0.841 | 0.200 | 0.564 | 4e-80 | |
| 47212603 | 1171 | unnamed protein product [Tetraodon nigro | 0.837 | 0.207 | 0.554 | 2e-78 | |
| 410926437 | 1020 | PREDICTED: splicing factor 3B subunit 3- | 0.837 | 0.238 | 0.557 | 2e-78 | |
| 229577321 | 1216 | splicing factor 3b, subunit 3 [Nasonia v | 0.834 | 0.199 | 0.564 | 3e-78 | |
| 332026090 | 1217 | Splicing factor 3B subunit 3 [Acromyrmex | 0.837 | 0.199 | 0.567 | 3e-78 | |
| 348503892 | 1217 | PREDICTED: splicing factor 3B subunit 3- | 0.837 | 0.199 | 0.554 | 5e-78 | |
| 405970223 | 1217 | Splicing factor 3B subunit 3 [Crassostre | 0.837 | 0.199 | 0.547 | 8e-78 | |
| 322797581 | 1217 | hypothetical protein SINV_00421 [Solenop | 0.837 | 0.199 | 0.557 | 1e-77 | |
| 170041368 | 1215 | splicing factor 3B subunit 3 [Culex quin | 0.834 | 0.199 | 0.547 | 1e-77 |
| >gi|328717412|ref|XP_003246201.1| PREDICTED: splicing factor 3B subunit 3-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 308 bits (789), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 165/286 (57%), Positives = 198/286 (69%), Gaps = 43/286 (15%)
Query: 2 FDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIGA 61
FDAYI+VSFSNATLVLSIGETVEEVS SGF GTTPTL CS +GD+++VQ+YP+G+RHI
Sbjct: 470 FDAYIIVSFSNATLVLSIGETVEEVSDSGFLGTTPTLSCSPLGDDAVVQIYPNGVRHI-- 527
Query: 62 KNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRCA 121
SDK+ MH D K +KKKIV+CA
Sbjct: 528 -----------RSDKR-------------------------MH---DWKAPEKKKIVKCA 548
Query: 122 VNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAV 181
NQRQ+VIAL GG L+YFEM P TG L+E + +M S+VLCMAL+NAPSGEQMSRFLAV
Sbjct: 549 ANQRQVVIALGGGELVYFEMDP-TGHLNEHKDRKEMNSDVLCMALANAPSGEQMSRFLAV 607
Query: 182 GLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYL 241
GL D TVR+ISL DCL Q +Q +P + ESL ++EMGASD SSDEPA +L LYL
Sbjct: 608 GLTDETVRIISLDTTDCLVQLKMQAIPAMPESLCIVEMGASDGGSSDEPAMN-SLSMLYL 666
Query: 242 YVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGNEA 287
+GLQNG LLR V+D +G+++D R RYLG +PVKLFKIR +GNEA
Sbjct: 667 NIGLQNGVLLRTVLDGVTGEMADTRARYLGGKPVKLFKIRTRGNEA 712
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|31213215|ref|XP_315551.1| AGAP005549-PA [Anopheles gambiae str. PEST] gi|21299714|gb|EAA11859.1| AGAP005549-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 304 bits (778), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 162/287 (56%), Positives = 198/287 (68%), Gaps = 43/287 (14%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
EFDAYI+VSF NATLVLSIG+TVEEV+ SGF GTTPTLCCSA+GD+++VQVYPDGIRHI
Sbjct: 469 EFDAYIIVSFVNATLVLSIGDTVEEVTDSGFLGTTPTLCCSALGDDALVQVYPDGIRHIR 528
Query: 61 AKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRC 120
A DK+ V++ K KK I++C
Sbjct: 529 A-------------DKR----------------------------VNEWKAPGKKTIMKC 547
Query: 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLA 180
AVNQRQ+VIAL GG L+YFEM P TG L+E +E +M SEV+CMAL + PSGEQ S FLA
Sbjct: 548 AVNQRQVVIALSGGELVYFEMDP-TGQLNEYTERKKMPSEVMCMALGSVPSGEQRSWFLA 606
Query: 181 VGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLY 240
VGLADNTVR+ISL P DCL +++Q LP AESL ++EMG + TSS++ +T G +Y
Sbjct: 607 VGLADNTVRIISLDPTDCLSPRSMQALPSAAESLCIVEMGTVE-TSSEDDGVTITTGCIY 665
Query: 241 LYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGNEA 287
L +GL NG LLR V+D SGDL+D R RYLGSRPVKLF+I+ QG+EA
Sbjct: 666 LNIGLTNGVLLRTVLDPVSGDLADTRTRYLGSRPVKLFRIQMQGSEA 712
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|47212603|emb|CAF93045.1| unnamed protein product [Tetraodon nigroviridis] | Back alignment and taxonomy information |
|---|
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 159/287 (55%), Positives = 193/287 (67%), Gaps = 44/287 (15%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
EFDAYI+VSF NATLVLSIGETVEEV+ SGF GTTPTL CS +GD+++VQVYPDGIRHI
Sbjct: 469 EFDAYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIR 528
Query: 61 AKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRC 120
A DK+ V++ K KK IVRC
Sbjct: 529 A-------------DKR----------------------------VNEWKTPGKKTIVRC 547
Query: 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLA 180
AVNQRQ+VIAL GG L+YFEM P +G L+E +E +M ++V+CM+L+N P GEQ SRFLA
Sbjct: 548 AVNQRQVVIALTGGELVYFEMDP-SGQLNEYTERKEMSADVVCMSLANVPPGEQRSRFLA 606
Query: 181 VGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLY 240
VGLADNTVR+ISL P DCL+ ++Q LP ESL ++EMG + DE ++G LY
Sbjct: 607 VGLADNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGVE--KQDELGEKASIGFLY 664
Query: 241 LYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGNEA 287
L +GLQNG LLR V+D +GDLSD R RYLGSRPVKLF++R QG EA
Sbjct: 665 LNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEA 711
|
Source: Tetraodon nigroviridis Species: Tetraodon nigroviridis Genus: Tetraodon Family: Tetraodontidae Order: Tetraodontiformes Class: Actinopterygii Phylum: Chordata Superkingdom: Eukaryota |
| >gi|410926437|ref|XP_003976685.1| PREDICTED: splicing factor 3B subunit 3-like, partial [Takifugu rubripes] | Back alignment and taxonomy information |
|---|
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 160/287 (55%), Positives = 192/287 (66%), Gaps = 44/287 (15%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
EFDAYI+VSF NATLVLSIGETVEEV+ SGF GTTPTL CS +GD ++VQVYPDGIRHI
Sbjct: 469 EFDAYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDEALVQVYPDGIRHIR 528
Query: 61 AKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRC 120
A DK+ V++ K KK IVRC
Sbjct: 529 A-------------DKR----------------------------VNEWKTPGKKTIVRC 547
Query: 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLA 180
AVNQRQ+VIAL GG L+YFEM P TG L+E +E +M ++V+CM+L+N P GEQ SRFLA
Sbjct: 548 AVNQRQVVIALTGGELVYFEMDP-TGQLNEYTERKEMSADVVCMSLANVPPGEQRSRFLA 606
Query: 181 VGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLY 240
VGLADNTVR+ISL P DCL+ ++Q LP ESL ++EMG + DE ++G LY
Sbjct: 607 VGLADNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGVE--KQDELGEKGSMGFLY 664
Query: 241 LYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGNEA 287
L +GLQNG LLR V+D +GDLSD R RYLGSRPVKLF++R QG EA
Sbjct: 665 LNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEA 711
|
Source: Takifugu rubripes Species: Takifugu rubripes Genus: Takifugu Family: Tetraodontidae Order: Tetraodontiformes Class: Actinopterygii Phylum: Chordata Superkingdom: Eukaryota |
| >gi|229577321|ref|NP_001153352.1| splicing factor 3b, subunit 3 [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 297 bits (761), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 162/287 (56%), Positives = 192/287 (66%), Gaps = 45/287 (15%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
EFDAYI+VSF NATLVLSIGETVEEV+ SGF GTTPTL CSA+G++++VQVYPDGIRHI
Sbjct: 469 EFDAYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCSALGEDALVQVYPDGIRHIR 528
Query: 61 AKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRC 120
A DK+ V++ K KK I++C
Sbjct: 529 A-------------DKR----------------------------VNEWKAPGKKTIIKC 547
Query: 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLA 180
AVNQRQ+VIAL GG L+YFEM P TG L+E +E +M SEV+CMAL N +GEQ S FLA
Sbjct: 548 AVNQRQVVIALTGGELVYFEMDP-TGQLNEYTERKKMPSEVMCMALGNVAAGEQRSWFLA 606
Query: 181 VGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLY 240
VGL DNTVR+ISL P DCL +++Q LP AESL ++EMG D TS D T L+
Sbjct: 607 VGLQDNTVRIISLDPSDCLAPRSMQALPAAAESLCIVEMGIKDDTSEDSNQMQST---LH 663
Query: 241 LYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGNEA 287
L +GLQNG LLR V+D SGDLSD R RYLGSRPVKLF+IR QGN+A
Sbjct: 664 LNIGLQNGVLLRTVLDPISGDLSDTRTRYLGSRPVKLFRIRMQGNQA 710
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332026090|gb|EGI66238.1| Splicing factor 3B subunit 3 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 297 bits (761), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 163/287 (56%), Positives = 194/287 (67%), Gaps = 44/287 (15%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
E+DAYI+VSF NATLVLSIGETVEEV+ SGF GTTPTL CSA+G++++VQVYPDGIRHI
Sbjct: 469 EYDAYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCSALGEDALVQVYPDGIRHIR 528
Query: 61 AKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRC 120
A DK+ V++ K KK IV+C
Sbjct: 529 A-------------DKR----------------------------VNEWKAPGKKTIVKC 547
Query: 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLA 180
AVNQRQ+VIAL GG L+YFEM P TG L+E +E +M SEV+CMAL N GEQ S FLA
Sbjct: 548 AVNQRQVVIALTGGELVYFEMDP-TGQLNEYTERKKMPSEVMCMALGNVAVGEQRSWFLA 606
Query: 181 VGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLY 240
VGL DNTVR+ISL P DCL +++Q LP AESL ++EMGA D +S E A P +LY
Sbjct: 607 VGLQDNTVRIISLDPSDCLAPRSMQALPAAAESLCIVEMGAKDADNS-EDAAP-QQSSLY 664
Query: 241 LYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGNEA 287
L +GLQNG LLR V+D SGDL+D R RYLGSRPVKLF+IR QGN+A
Sbjct: 665 LNIGLQNGVLLRTVLDPISGDLADTRTRYLGSRPVKLFRIRMQGNQA 711
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|348503892|ref|XP_003439496.1| PREDICTED: splicing factor 3B subunit 3-like [Oreochromis niloticus] | Back alignment and taxonomy information |
|---|
Score = 296 bits (759), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 159/287 (55%), Positives = 193/287 (67%), Gaps = 44/287 (15%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
EFDAYI+VSF NATLVLSIGETVEEV+ SGF GTTPTL CS +G++++VQVYPDGIRHI
Sbjct: 469 EFDAYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIR 528
Query: 61 AKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRC 120
A DK+ V++ K KK IVRC
Sbjct: 529 A-------------DKR----------------------------VNEWKTPGKKTIVRC 547
Query: 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLA 180
AVNQRQ+VIAL GG L+YFEM P +G L+E +E +M ++V+CM+L+N P GEQ SRFLA
Sbjct: 548 AVNQRQVVIALTGGELVYFEMDP-SGQLNEYTERKEMSADVVCMSLANVPPGEQRSRFLA 606
Query: 181 VGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLY 240
VGLADNTVR+ISL P DCL+ ++Q LP ESL ++EMG + DE T+G LY
Sbjct: 607 VGLADNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGVE--KQDELGDKGTIGFLY 664
Query: 241 LYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGNEA 287
L +GLQNG LLR V+D +GDLSD R RYLGSRPVKLF++R QG EA
Sbjct: 665 LNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEA 711
|
Source: Oreochromis niloticus Species: Oreochromis niloticus Genus: Oreochromis Family: Cichlidae Order: Perciformes Class: Actinopterygii Phylum: Chordata Superkingdom: Eukaryota |
| >gi|405970223|gb|EKC35151.1| Splicing factor 3B subunit 3 [Crassostrea gigas] | Back alignment and taxonomy information |
|---|
Score = 296 bits (758), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 157/287 (54%), Positives = 193/287 (67%), Gaps = 44/287 (15%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
EFDAYI+VSF NATLVLSIGETVEEV+ SGF GTTPTL CS +GD+++VQ+YPDGIRHI
Sbjct: 469 EFDAYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCSQLGDDALVQIYPDGIRHI- 527
Query: 61 AKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRC 120
SDK+ V++ K KK IV+C
Sbjct: 528 ------------RSDKR----------------------------VNEWKTPGKKSIVKC 547
Query: 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLA 180
AVNQRQ+VIAL GG L+YFEM P TG L+E +E +M SEV+CMAL P GEQ RFLA
Sbjct: 548 AVNQRQVVIALTGGELVYFEMDP-TGQLNEYTERKEMSSEVVCMALGRVPVGEQRCRFLA 606
Query: 181 VGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLY 240
VGL+DNTVR+ISL P DCL ++Q LP+ +ESL ++EMG ++ + +E P T+G L+
Sbjct: 607 VGLSDNTVRIISLDPSDCLSPLSMQALPEPSESLCIVEMGGTE--AKEETGEPGTVGGLF 664
Query: 241 LYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGNEA 287
L +GLQNG LLR V+D +GDLSD R RYLG RPVKLF+I QG+EA
Sbjct: 665 LNIGLQNGVLLRTVLDNVTGDLSDTRTRYLGVRPVKLFRISMQGSEA 711
|
Source: Crassostrea gigas Species: Crassostrea gigas Genus: Crassostrea Family: Ostreidae Order: Ostreoida Class: Bivalvia Phylum: Mollusca Superkingdom: Eukaryota |
| >gi|322797581|gb|EFZ19622.1| hypothetical protein SINV_00421 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 160/287 (55%), Positives = 195/287 (67%), Gaps = 44/287 (15%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
E+DAYI+VSF NATLVLSIGETVEEV+ SGF GTTPTL CSA+G++++VQVYPDGIRHI
Sbjct: 469 EYDAYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCSALGEDALVQVYPDGIRHIR 528
Query: 61 AKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRC 120
A DK+ V++ K KK IV+C
Sbjct: 529 A-------------DKR----------------------------VNEWKAPGKKTIVKC 547
Query: 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLA 180
AVNQRQ+VIAL GG L+YFEM P TG L+E +E +M SEV+CMAL N GEQ S FLA
Sbjct: 548 AVNQRQVVIALTGGELVYFEMDP-TGQLNEYTERKKMPSEVMCMALGNVAVGEQRSWFLA 606
Query: 181 VGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLY 240
VGL DNTVR+ISL P DCL +++Q LP AESL ++EMGA + +S++ A + +LY
Sbjct: 607 VGLQDNTVRIISLDPSDCLAPRSMQALPAAAESLCIVEMGAKEADNSEDAAPQQS--SLY 664
Query: 241 LYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGNEA 287
L +GLQNG LLR V+D SGDL+D R RYLGSRPVKLF+IR QGN+A
Sbjct: 665 LNIGLQNGVLLRTVLDPISGDLADTRTRYLGSRPVKLFRIRMQGNQA 711
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170041368|ref|XP_001848437.1| splicing factor 3B subunit 3 [Culex quinquefasciatus] gi|167864946|gb|EDS28329.1| splicing factor 3B subunit 3 [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 157/287 (54%), Positives = 193/287 (67%), Gaps = 45/287 (15%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
EFDAYI+VSF NATLVLSIG+TVEEV+ SGF GTTPTLCCSA+GD+++VQVYPDGIRHI
Sbjct: 469 EFDAYIIVSFVNATLVLSIGDTVEEVTDSGFLGTTPTLCCSALGDDALVQVYPDGIRHIR 528
Query: 61 AKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRC 120
A DK+ V++ K KK I++C
Sbjct: 529 A-------------DKR----------------------------VNEWKAPGKKTIIKC 547
Query: 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLA 180
AVN RQ+VIAL GG L+YFEM P TG L+E +E +M S+V+CMAL + P+GEQ + FLA
Sbjct: 548 AVNSRQVVIALSGGELVYFEMDP-TGQLNEYTERKKMPSDVMCMALGSVPAGEQRAWFLA 606
Query: 181 VGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLY 240
VGLADNTVR+ISL P DCL +++Q LP AESL ++EMG + S+E T G Y
Sbjct: 607 VGLADNTVRIISLDPADCLSPRSMQALPSAAESLCIVEMGTGE---SNEEGTVSTAGCFY 663
Query: 241 LYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGNEA 287
L +GL NG LLR V+D SGDL+D R RYLGSRPVKLF+I+ QG+EA
Sbjct: 664 LNIGLTNGVLLRTVLDPVSGDLADTRTRYLGSRPVKLFRIKMQGSEA 710
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 290 | ||||||
| ZFIN|ZDB-GENE-040426-2901 | 1217 | sf3b3 "splicing factor 3b, sub | 0.617 | 0.147 | 0.587 | 7.3e-51 | |
| RGD|1311636 | 902 | Sf3b3 "splicing factor 3b, sub | 0.617 | 0.198 | 0.582 | 2.1e-49 | |
| UNIPROTKB|E9PT66 | 920 | Sf3b3 "Protein Sf3b3" [Rattus | 0.617 | 0.194 | 0.582 | 2.3e-49 | |
| UNIPROTKB|A0JN52 | 1217 | SF3B3 "Splicing factor 3B subu | 0.617 | 0.147 | 0.582 | 5.4e-49 | |
| UNIPROTKB|E2RR33 | 1217 | SF3B3 "Uncharacterized protein | 0.617 | 0.147 | 0.582 | 5.4e-49 | |
| UNIPROTKB|Q15393 | 1217 | SF3B3 "Splicing factor 3B subu | 0.617 | 0.147 | 0.582 | 5.4e-49 | |
| MGI|MGI:1289341 | 1217 | Sf3b3 "splicing factor 3b, sub | 0.617 | 0.147 | 0.582 | 5.4e-49 | |
| UNIPROTKB|F1P529 | 1228 | SF3B3 "Uncharacterized protein | 0.617 | 0.145 | 0.582 | 5.6e-49 | |
| FB|FBgn0035162 | 1227 | CG13900 [Drosophila melanogast | 0.624 | 0.147 | 0.544 | 1.4e-46 | |
| WB|WBGene00019323 | 1220 | teg-4 [Caenorhabditis elegans | 0.679 | 0.161 | 0.4 | 6e-33 |
| ZFIN|ZDB-GENE-040426-2901 sf3b3 "splicing factor 3b, subunit 3" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 526 (190.2 bits), Expect = 7.3e-51, Sum P(2) = 7.3e-51
Identities = 107/182 (58%), Positives = 134/182 (73%)
Query: 106 VSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMA 165
V++ K KK I+RCAVNQRQ+VIAL GG L+YFEM P +G L+E +E +M ++V+CM+
Sbjct: 533 VNEWKTPGKKTIIRCAVNQRQVVIALTGGELVYFEMDP-SGQLNEYTERKEMSADVVCMS 591
Query: 166 LSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPT 225
L+N P GEQ SRFLAVGL DNTVR+ISL P DCL+ ++Q LP ESL ++EMG +
Sbjct: 592 LANVPPGEQRSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGVE-- 649
Query: 226 SSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGN 285
DE T+G LYL +GLQNG LLR V+D +GDLSD R RYLGSRPVKLF++R QG
Sbjct: 650 KQDELGEKGTIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQ 709
Query: 286 EA 287
EA
Sbjct: 710 EA 711
|
|
| RGD|1311636 Sf3b3 "splicing factor 3b, subunit 3" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 522 (188.8 bits), Expect = 2.1e-49, P = 2.1e-49
Identities = 106/182 (58%), Positives = 135/182 (74%)
Query: 106 VSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMA 165
V++ K KK IV+CAVNQRQ+VIAL GG L+YFEM P +G L+E +E +M ++V+CM+
Sbjct: 313 VNEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDP-SGQLNEYTERKEMSADVVCMS 371
Query: 166 LSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPT 225
L+N P GEQ SRFLAVGL DNTVR+ISL P DCL+ ++Q LP ESL ++EMG ++
Sbjct: 372 LANVPPGEQRSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTE-- 429
Query: 226 SSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGN 285
DE ++G LYL +GLQNG LLR V+D +GDLSD R RYLGSRPVKLF++R QG
Sbjct: 430 KQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQ 489
Query: 286 EA 287
EA
Sbjct: 490 EA 491
|
|
| UNIPROTKB|E9PT66 Sf3b3 "Protein Sf3b3" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 522 (188.8 bits), Expect = 2.3e-49, P = 2.3e-49
Identities = 106/182 (58%), Positives = 135/182 (74%)
Query: 106 VSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMA 165
V++ K KK IV+CAVNQRQ+VIAL GG L+YFEM P +G L+E +E +M ++V+CM+
Sbjct: 236 VNEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDP-SGQLNEYTERKEMSADVVCMS 294
Query: 166 LSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPT 225
L+N P GEQ SRFLAVGL DNTVR+ISL P DCL+ ++Q LP ESL ++EMG ++
Sbjct: 295 LANVPPGEQRSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTE-- 352
Query: 226 SSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGN 285
DE ++G LYL +GLQNG LLR V+D +GDLSD R RYLGSRPVKLF++R QG
Sbjct: 353 KQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQ 412
Query: 286 EA 287
EA
Sbjct: 413 EA 414
|
|
| UNIPROTKB|A0JN52 SF3B3 "Splicing factor 3B subunit 3" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 522 (188.8 bits), Expect = 5.4e-49, P = 5.4e-49
Identities = 106/182 (58%), Positives = 135/182 (74%)
Query: 106 VSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMA 165
V++ K KK IV+CAVNQRQ+VIAL GG L+YFEM P +G L+E +E +M ++V+CM+
Sbjct: 533 VNEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDP-SGQLNEYTERKEMSADVVCMS 591
Query: 166 LSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPT 225
L+N P GEQ SRFLAVGL DNTVR+ISL P DCL+ ++Q LP ESL ++EMG ++
Sbjct: 592 LANVPPGEQRSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTE-- 649
Query: 226 SSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGN 285
DE ++G LYL +GLQNG LLR V+D +GDLSD R RYLGSRPVKLF++R QG
Sbjct: 650 KQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQ 709
Query: 286 EA 287
EA
Sbjct: 710 EA 711
|
|
| UNIPROTKB|E2RR33 SF3B3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 522 (188.8 bits), Expect = 5.4e-49, P = 5.4e-49
Identities = 106/182 (58%), Positives = 135/182 (74%)
Query: 106 VSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMA 165
V++ K KK IV+CAVNQRQ+VIAL GG L+YFEM P +G L+E +E +M ++V+CM+
Sbjct: 533 VNEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDP-SGQLNEYTERKEMSADVVCMS 591
Query: 166 LSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPT 225
L+N P GEQ SRFLAVGL DNTVR+ISL P DCL+ ++Q LP ESL ++EMG ++
Sbjct: 592 LANVPPGEQRSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTE-- 649
Query: 226 SSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGN 285
DE ++G LYL +GLQNG LLR V+D +GDLSD R RYLGSRPVKLF++R QG
Sbjct: 650 KQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQ 709
Query: 286 EA 287
EA
Sbjct: 710 EA 711
|
|
| UNIPROTKB|Q15393 SF3B3 "Splicing factor 3B subunit 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 522 (188.8 bits), Expect = 5.4e-49, P = 5.4e-49
Identities = 106/182 (58%), Positives = 135/182 (74%)
Query: 106 VSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMA 165
V++ K KK IV+CAVNQRQ+VIAL GG L+YFEM P +G L+E +E +M ++V+CM+
Sbjct: 533 VNEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDP-SGQLNEYTERKEMSADVVCMS 591
Query: 166 LSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPT 225
L+N P GEQ SRFLAVGL DNTVR+ISL P DCL+ ++Q LP ESL ++EMG ++
Sbjct: 592 LANVPPGEQRSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTE-- 649
Query: 226 SSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGN 285
DE ++G LYL +GLQNG LLR V+D +GDLSD R RYLGSRPVKLF++R QG
Sbjct: 650 KQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQ 709
Query: 286 EA 287
EA
Sbjct: 710 EA 711
|
|
| MGI|MGI:1289341 Sf3b3 "splicing factor 3b, subunit 3" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 522 (188.8 bits), Expect = 5.4e-49, P = 5.4e-49
Identities = 106/182 (58%), Positives = 135/182 (74%)
Query: 106 VSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMA 165
V++ K KK IV+CAVNQRQ+VIAL GG L+YFEM P +G L+E +E +M ++V+CM+
Sbjct: 533 VNEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDP-SGQLNEYTERKEMSADVVCMS 591
Query: 166 LSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPT 225
L+N P GEQ SRFLAVGL DNTVR+ISL P DCL+ ++Q LP ESL ++EMG ++
Sbjct: 592 LANVPPGEQRSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTE-- 649
Query: 226 SSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGN 285
DE ++G LYL +GLQNG LLR V+D +GDLSD R RYLGSRPVKLF++R QG
Sbjct: 650 KQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQ 709
Query: 286 EA 287
EA
Sbjct: 710 EA 711
|
|
| UNIPROTKB|F1P529 SF3B3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 522 (188.8 bits), Expect = 5.6e-49, P = 5.6e-49
Identities = 106/182 (58%), Positives = 135/182 (74%)
Query: 106 VSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMA 165
V++ K KK IV+CAVNQRQ+VIAL GG L+YFEM P +G L+E +E +M ++V+CM+
Sbjct: 533 VNEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDP-SGQLNEYTERKEMSADVVCMS 591
Query: 166 LSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPT 225
L+N P GEQ SRFLAVGL DNTVR+ISL P DCL+ ++Q LP ESL ++EMG ++
Sbjct: 592 LANVPPGEQRSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTE-- 649
Query: 226 SSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGN 285
DE ++G LYL +GLQNG LLR V+D +GDLSD R RYLGSRPVKLF++R QG
Sbjct: 650 KQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQ 709
Query: 286 EA 287
EA
Sbjct: 710 EA 711
|
|
| FB|FBgn0035162 CG13900 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 491 (177.9 bits), Expect = 1.4e-46, Sum P(2) = 1.4e-46
Identities = 103/189 (54%), Positives = 132/189 (69%)
Query: 106 VSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMA 165
V++ K KK I +CAVNQRQ+VI L G L+YFEM P TG L+E +E +M +E++CMA
Sbjct: 533 VNEWKAPGKKSITKCAVNQRQVVITLSGRELVYFEMDP-TGELNEYTERSEMPAEIMCMA 591
Query: 166 LSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPT 225
L P GEQ S FLAVGLADNTVR++SL P +CL ++Q LP AESL ++EMG ++ T
Sbjct: 592 LGTVPEGEQRSWFLAVGLADNTVRILSLDPNNCLTPCSMQALPSPAESLCLVEMGHTEST 651
Query: 226 SS---DEPAGPVTLGN----LYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLF 278
+ D+ A GN +YL +GL NG LLR V+D SGDL+D R RYLGSRPVKLF
Sbjct: 652 TQGGLDDDAPAQRSGNNKGTIYLNIGLSNGVLLRTVLDPVSGDLADTRTRYLGSRPVKLF 711
Query: 279 KIRCQGNEA 287
+I+ QG+EA
Sbjct: 712 RIKMQGSEA 720
|
|
| WB|WBGene00019323 teg-4 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 372 (136.0 bits), Expect = 6.0e-33, P = 6.0e-33
Identities = 84/210 (40%), Positives = 126/210 (60%)
Query: 80 VRCAV--NQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRCAVNQRQIVIALQGGRLI 137
+ CA+ + + I +G R I + +++ K +++IV+CAVN+RQ+ +AL GG L+
Sbjct: 506 IGCAMIGDDSLVQIYSEGIRHIRADKR-INEWKAPPRRQIVKCAVNRRQVAVALTGGELV 564
Query: 138 YFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQD 197
YFE+ G L+E +E +++ CM S GE SRFLA+G DN VR+ISL P D
Sbjct: 565 YFELDLN-GTLNEFTERKLFNADIACMTFSEISEGELNSRFLALGTVDNAVRIISLDPND 623
Query: 198 CLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQ 257
L + Q LP ES+++I+ T +++ G + ++L +GLQNG L R VD
Sbjct: 624 MLMPLSTQSLPCPPESILLID------TPNEDGKG---VAAVHLNIGLQNGCLFRNTVDN 674
Query: 258 TSGDLSDNRMRYLGSRPVKLFKIRCQGNEA 287
+G + D R RYLG+RPVKLFK++CQG A
Sbjct: 675 VTGAIMDTRTRYLGTRPVKLFKVQCQGRSA 704
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q921M3 | SF3B3_MOUSE | No assigned EC number | 0.5470 | 0.8379 | 0.1996 | yes | N/A |
| Q5RBI5 | SF3B3_PONAB | No assigned EC number | 0.5470 | 0.8379 | 0.1996 | yes | N/A |
| A0JN52 | SF3B3_BOVIN | No assigned EC number | 0.5470 | 0.8379 | 0.1996 | yes | N/A |
| Q15393 | SF3B3_HUMAN | No assigned EC number | 0.5470 | 0.8379 | 0.1996 | yes | N/A |
| Q1LVE8 | SF3B3_DANRE | No assigned EC number | 0.5470 | 0.8379 | 0.1996 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 290 | |||
| pfam10433 | 513 | pfam10433, MMS1_N, Mono-functional DNA-alkylating | 2e-12 |
| >gnl|CDD|220751 pfam10433, MMS1_N, Mono-functional DNA-alkylating methyl methanesulfonate N-term | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 2e-12
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 9/107 (8%)
Query: 5 YIVVSFSNATLVLSI----GETVEEVSG-SGFYGTTPTLCCSAMGDNSIVQVYPDGIRHI 59
Y++VSF T VL + GE VEEV SG + TL D I+QV + IR
Sbjct: 385 YLLVSFPFETRVLQLPVDPGEEVEEVDEDSGLDLSVQTLAAGNTSDGVIIQVTENSIRLS 444
Query: 60 GAKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPV 106
+ K++D E + I +VN +++A+ G L+ ++
Sbjct: 445 DLELG--KITD--EWSDEIITAASVNGSLVLVAVAGRNLVSLRIYLG 487
|
MMS1 is a protein that protects against replication-dependent DNA damage in Saccharomyces cerevisiae. MMS1 belongs to the DDB1 family of cullin 4 adaptors and the two proteins are homologous. MMS1 bridges the interaction of MMS22 and Crt10 with Cul8/Rtt101. Cul8/Rtt101 is a cullin protein involved in the regulation of DNA replication subsequent to DNA damage. The N-terminal region of MMS1 and the C-terminal of MMS22 are required for the the MMS1-MMS22 interaction. The human HIV-1 virion-associated protein Vpr assembles with DDB1 through interaction with DCAF1 (chromatin assembly factor) to form an E3 ubiquitin ligase that targets cellular substrates for proteasome-mediated degradation and subsequent G2 arrest. Length = 513 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 290 | |||
| KOG1898|consensus | 1205 | 100.0 | ||
| KOG1897|consensus | 1096 | 100.0 | ||
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 99.65 | |
| KOG1896|consensus | 1366 | 99.45 | ||
| KOG1898|consensus | 1205 | 99.29 | ||
| KOG1897|consensus | 1096 | 99.23 | ||
| COG5161 | 1319 | SFT1 Pre-mRNA cleavage and polyadenylation specifi | 98.21 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 97.56 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.54 | |
| KOG2110|consensus | 391 | 97.44 | ||
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 97.03 | |
| KOG0318|consensus | 603 | 96.86 | ||
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 96.73 | |
| KOG0306|consensus | 888 | 96.66 | ||
| KOG0291|consensus | 893 | 96.64 | ||
| KOG2111|consensus | 346 | 96.63 | ||
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 96.41 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 96.26 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 96.13 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.09 | |
| KOG0318|consensus | 603 | 96.02 | ||
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 95.61 | |
| KOG2110|consensus | 391 | 95.51 | ||
| PTZ00421 | 493 | coronin; Provisional | 95.25 | |
| KOG1538|consensus | 1081 | 95.12 | ||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 95.11 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 95.1 | |
| KOG0647|consensus | 347 | 95.08 | ||
| KOG0283|consensus | 712 | 95.07 | ||
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 94.99 | |
| KOG1539|consensus | 910 | 94.96 | ||
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 94.71 | |
| PF14779 | 257 | BBS1: Ciliary BBSome complex subunit 1 | 94.36 | |
| KOG1274|consensus | 933 | 94.3 | ||
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 94.24 | |
| KOG0647|consensus | 347 | 93.83 | ||
| KOG0266|consensus | 456 | 93.81 | ||
| KOG0279|consensus | 315 | 93.77 | ||
| KOG1036|consensus | 323 | 93.74 | ||
| KOG2106|consensus | 626 | 93.69 | ||
| KOG0310|consensus | 487 | 93.59 | ||
| KOG1539|consensus | 910 | 93.43 | ||
| KOG0299|consensus | 479 | 93.36 | ||
| KOG2048|consensus | 691 | 93.35 | ||
| KOG0316|consensus | 307 | 93.33 | ||
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 93.15 | |
| KOG1036|consensus | 323 | 92.7 | ||
| KOG4649|consensus | 354 | 92.63 | ||
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 92.53 | |
| KOG0266|consensus | 456 | 92.46 | ||
| KOG0646|consensus | 476 | 92.34 | ||
| KOG2114|consensus | 933 | 91.92 | ||
| KOG2106|consensus | 626 | 91.64 | ||
| KOG0277|consensus | 311 | 91.61 | ||
| KOG0296|consensus | 399 | 90.82 | ||
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 89.52 | |
| KOG0294|consensus | 362 | 89.38 | ||
| KOG0310|consensus | 487 | 88.9 | ||
| KOG0291|consensus | 893 | 88.04 | ||
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 87.66 | |
| KOG2321|consensus | 703 | 87.36 | ||
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 87.26 | |
| KOG2048|consensus | 691 | 87.15 | ||
| KOG0270|consensus | 463 | 86.95 | ||
| KOG0294|consensus | 362 | 86.49 | ||
| KOG0319|consensus | 775 | 86.35 | ||
| KOG2055|consensus | 514 | 85.72 | ||
| KOG1407|consensus | 313 | 85.34 | ||
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 85.27 | |
| KOG2445|consensus | 361 | 85.17 | ||
| KOG1273|consensus | 405 | 85.02 | ||
| KOG0283|consensus | 712 | 84.86 | ||
| KOG2055|consensus | 514 | 84.66 | ||
| KOG0646|consensus | 476 | 84.34 | ||
| KOG2111|consensus | 346 | 84.32 | ||
| KOG0277|consensus | 311 | 83.99 | ||
| KOG0772|consensus | 641 | 83.6 | ||
| KOG0296|consensus | 399 | 83.59 | ||
| KOG1332|consensus | 299 | 83.14 | ||
| KOG0299|consensus | 479 | 83.03 | ||
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 83.0 | |
| KOG0772|consensus | 641 | 82.87 | ||
| KOG1240|consensus | 1431 | 82.85 | ||
| KOG1645|consensus | 463 | 82.74 | ||
| KOG0268|consensus | 433 | 82.39 | ||
| KOG0306|consensus | 888 | 82.21 | ||
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 81.87 | |
| KOG0278|consensus | 334 | 81.81 | ||
| KOG2321|consensus | 703 | 80.92 |
| >KOG1898|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=319.03 Aligned_cols=238 Identities=52% Similarity=0.889 Sum_probs=214.0
Q ss_pred CcceEEEEEcCCceEEEEeCCEEEEeecCCccCCCCeEEEEeeCCCeEEEEecCCeEEEeecCcceeeeccCCCCCceEE
Q psy14552 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIGAKNTTWKVSDKKESDKKKIV 80 (290)
Q Consensus 1 ~~~~ylvlS~~~~T~vl~~~~~~~e~~~~gf~~~~~Ti~~~~~~~~~ivQVt~~~v~l~~~~~~~~~~~~~~~~~~~~Iv 80 (290)
.||.||++||.++|+||++|+.+||++++||..+.+|++|+.|+++++|||+++++|++-..++
T Consensus 467 ~ydsyivvsF~n~TlVLsIgesveEvtdsgFls~~~Tl~~~l~Gd~slVQi~~d~iRhi~~~~r---------------- 530 (1205)
T KOG1898|consen 467 VYDSYIVVSFVNGTLVLSIGESVEEVTDSGFLSTTPTLACSLMGDDSLVQIHPDGIRHIRPTKR---------------- 530 (1205)
T ss_pred ccceEEEEEeeccEEEEEcchhHHHhhhcccccCCceEEEEEecCCcEEEEchhhhhhcccccc----------------
Confidence 4899999999999999999999999999999999999999999999999999999999866553
Q ss_pred EEeecCceEEEEeeCCeEEEEEecCCCceecCCCceEEEEEeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcc
Q psy14552 81 RCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESE 160 (290)
Q Consensus 81 ~as~n~~qv~ial~~g~i~~~~~~~~~~~~~~~~~~Ii~as~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~e 160 (290)
..+|..|+++.|+.|+.|+.|++||+++++++||+++. ++++.|+.++.++..+
T Consensus 531 -------------------------~~ew~~P~~~~Iv~~avnr~qiVvalSngelvyfe~d~-sgql~E~~er~tl~~~ 584 (1205)
T KOG1898|consen 531 -------------------------INEWKTPERVRIVKCAVNRRQIVVALSNGELVYFEGDV-SGQLNEFTERVTLSTD 584 (1205)
T ss_pred -------------------------cccccCCCceEEEEEeecceEEEEEccCCeEEEEEecc-Cccceeeeeeeeecee
Confidence 34787888877787788888888888888888888775 5778887677889999
Q ss_pred eeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceE
Q psy14552 161 VLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLY 240 (290)
Q Consensus 161 i~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (290)
++|+++.+...+.+++.||++|..|+++++++|++..+|...+.|.|+..|+|+++++|...+++ ...++|
T Consensus 585 vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~---------~~~~L~ 655 (1205)
T KOG1898|consen 585 VACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGT---------DVAQLY 655 (1205)
T ss_pred ehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccccCCCccceEEEEecccCCc---------cceeEE
Confidence 99999999888888999999999999999999999999999999999999999999999765321 135899
Q ss_pred EEEEecCceEEEEEEeCCCCcccccceEEecCcceEEEEEEeCCceeec
Q psy14552 241 LYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGNEANY 289 (290)
Q Consensus 241 L~iGl~dG~l~~~~~d~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~~~ 289 (290)
|++||+||+|+|+.+|..+|.|.|.|+|+||.+||+++++..+|+.+++
T Consensus 656 l~~GL~NGvllR~~id~v~G~l~d~rtR~lG~~pvkLf~~~~~~~s~vL 704 (1205)
T KOG1898|consen 656 LLIGLRNGVLLRFVIDTVTGQLLDIRTRFLGLRPVKLFPISMRGQSDVL 704 (1205)
T ss_pred EEecccccEEEEEEecccccceeeeheeeeccccceEEEEeecCcceeE
Confidence 9999999999999999999999999999999999999999999998875
|
|
| >KOG1897|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-35 Score=292.62 Aligned_cols=230 Identities=31% Similarity=0.476 Sum_probs=200.4
Q ss_pred CcceEEEEEcCCceEEEEeCCEEEEeecCCccCCCCeEEEEeeCCCeEEEEecCCeEEEeecCcceeeeccCCCCCceEE
Q psy14552 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIGAKNTTWKVSDKKESDKKKIV 80 (290)
Q Consensus 1 ~~~~ylvlS~~~~T~vl~~~~~~~e~~~~gf~~~~~Ti~~~~~~~~~ivQVt~~~v~l~~~~~~~~~~~~~~~~~~~~Iv 80 (290)
++|.|||+||+++|++|.++++++|.+++||.+++|||+|+++.++.++|||+++||+++....
T Consensus 417 ~~d~ylvlsf~~eTrvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs~~iRl~ss~~~---------------- 480 (1096)
T KOG1897|consen 417 NYDNYLVLSFISETRVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVTSNSIRLVSSAGL---------------- 480 (1096)
T ss_pred cCCcEEEEEeccceEEEEEccceEEeccccccccCceEEEEccCCceEEEEecccEEEEcchhh----------------
Confidence 4788999999999999999888999999999999999999999999999999999999976522
Q ss_pred EEeecCceEEEEeeCCeEEEEEecCCCceecCCCceEEEEEeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcc
Q psy14552 81 RCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESE 160 (290)
Q Consensus 81 ~as~n~~qv~ial~~g~i~~~~~~~~~~~~~~~~~~Ii~as~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~e 160 (290)
..+|.+|.++.|.+|.+|..|++||..+..+.|+++.+ ..|.+. .+..+..|
T Consensus 481 -------------------------~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~--~~l~e~-~~~~~e~e 532 (1096)
T KOG1897|consen 481 -------------------------RSEWRPPGKITIGVVSANASQVVVAGGGLALFYLEIED--GGLREV-SHKEFEYE 532 (1096)
T ss_pred -------------------------hhcccCCCceEEEEEeecceEEEEecCccEEEEEEeec--cceeee-eeheecce
Confidence 56899999888888888888999998788888888887 236665 46789999
Q ss_pred eeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceE
Q psy14552 161 VLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLY 240 (290)
Q Consensus 161 i~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (290)
++|++|.|.++++.++.+++||+|+..+.++...|+..+..........+|||+++..+++ ...|
T Consensus 533 vaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~---------------d~~y 597 (1096)
T KOG1897|consen 533 VACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEG---------------DIHY 597 (1096)
T ss_pred eEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeec---------------cceE
Confidence 9999999887666688999999997766666666665555554456677999999999732 2789
Q ss_pred EEEEecCceEEEEEEeCCCCcccccceEEecCcceEEEEEEeCCceeec
Q psy14552 241 LYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGNEANY 289 (290)
Q Consensus 241 L~iGl~dG~l~~~~~d~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~~~ 289 (290)
|+|+++||++++|.+|..+|.++++|++.||++|++|+.++.+++.++|
T Consensus 598 LlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vf 646 (1096)
T KOG1897|consen 598 LLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVF 646 (1096)
T ss_pred EEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEE
Confidence 9999999999999999999999999999999999999999999999987
|
|
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-15 Score=149.53 Aligned_cols=101 Identities=43% Similarity=0.693 Sum_probs=68.9
Q ss_pred ceEEEEEcCCceEEEEeC-----CEEEEeecCCccCCCCeEEEEeeCCCeEEEEecCCeEEEeecCcceeeeccCCCCCc
Q psy14552 3 DAYIVVSFSNATLVLSIG-----ETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIGAKNTTWKVSDKKESDKK 77 (290)
Q Consensus 3 ~~ylvlS~~~~T~vl~~~-----~~~~e~~~~gf~~~~~Ti~~~~~~~~~ivQVt~~~v~l~~~~~~~~~~~~~~~~~~~ 77 (290)
|.|||+|++++|+||+++ ++++|++..+|.++++||+||+++++.+||||+++||+++.+.... ....+||.+.
T Consensus 371 ~~~lv~S~~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~~~~ivQVt~~~i~l~~~~~~~~-~~~w~~~~~~ 449 (504)
T PF10433_consen 371 HSYLVLSFPNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVGDGRIVQVTPKGIRLIDLEDGKL-TQEWKPPAGS 449 (504)
T ss_dssp BSEEEEEESSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEETTTEEEEEESSEEEEEESSSTSE-EEEEE-TTS-
T ss_pred ceEEEEEcCCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcCCCeEEEEecCeEEEEECCCCeE-EEEEeCCCCC
Confidence 789999999999999994 5677775459999999999999999999999999999997543211 1222355555
Q ss_pred eEEEEeecCceEEEEeeCCeEEEEEec
Q psy14552 78 KIVRCAVNQRQIVIALQGGRLIYFEMH 104 (290)
Q Consensus 78 ~Iv~as~n~~qv~ial~~g~i~~~~~~ 104 (290)
.|++|++|++|+++++++|++.||+++
T Consensus 450 ~I~~a~~~~~~v~v~~~~~~~~~~~~~ 476 (504)
T PF10433_consen 450 IIVAASINDPQVLVALSGGELVYFELD 476 (504)
T ss_dssp --SEEEESSSEEEEEE-TTEEEEEEEE
T ss_pred eEEEEEECCCEEEEEEeCCcEEEEEEE
Confidence 666666666666666555555555554
|
... |
| >KOG1896|consensus | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.7e-12 Score=130.50 Aligned_cols=239 Identities=19% Similarity=0.274 Sum_probs=148.9
Q ss_pred cceEEEEEcCCceEEEEeCCEEEEeecCCccCCCCeEEEEeeCCC-eEEEEecCCeEEEeecCcceeeeccCCCCCceEE
Q psy14552 2 FDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDN-SIVQVYPDGIRHIGAKNTTWKVSDKKESDKKKIV 80 (290)
Q Consensus 2 ~~~ylvlS~~~~T~vl~~~~~~~e~~~~gf~~~~~Ti~~~~~~~~-~ivQVt~~~v~l~~~~~~~~~~~~~~~~~~~~Iv 80 (290)
.|.|+++|.+++|+||++|+++.|++.++|..+.+||++|+++++ .||||||+++|++|.+.. -++.++.+.+..++
T Consensus 553 ~h~~lilS~e~~t~il~tge~~~Ev~~s~f~~~~~Tl~~gnlg~~rriVQVtp~~~rllDg~~r--~lq~i~fd~~~~vv 630 (1366)
T KOG1896|consen 553 QHLYLILSTESRTMILETGEELLEVSGSGFTRDGPTLFAGNLGNERRIVQVTPSGLRLLDGDLR--MLQRIPFDSGAIVV 630 (1366)
T ss_pred cceEEEeecccchhhhhccchhhhcccceeEeccceEEEEecCCceEEEEEccceeEEecCcch--heeEeccccCCcEE
Confidence 489999999999999999999999999999999999999999996 699999999999987532 26678889999999
Q ss_pred EEeecCceEEEEeeCCeEEEEEecCCC-ceec--CCCceE--EEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeee
Q psy14552 81 RCAVNQRQIVIALQGGRLIYFEMHPVS-DKKE--SDKKKI--VRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECSE 153 (290)
Q Consensus 81 ~as~n~~qv~ial~~g~i~~~~~~~~~-~~~~--~~~~~I--i~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~ 153 (290)
.+++.|+||++-.++|++.+|++++.. ++.. |....+ ++| +.++.....+. +............
T Consensus 631 ~~sv~dpyv~v~~~~g~i~~~~l~~~s~rl~~~~~~s~~~~sv~~~~dlsg~f~~~s~---------l~~k~~~~~gr~~ 701 (1366)
T KOG1896|consen 631 QTSVADPYVAVRSSEGRITLYDLEEKSHRLALHDPMSFKVVSVSLPADLSGMFTTLSD---------LSLKGNEANGRSS 701 (1366)
T ss_pred EEeccCceEEEEEcCCceEEEEeccccchhhccCcccceeEEEechhhhccceEEEee---------ecccCcccccccc
Confidence 999999999999999999999997652 2211 211122 222 12233333331 1100000000000
Q ss_pred -eeecCcceeEEEeeeCCCC--CccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCC--CCCCCC
Q psy14552 154 -TIQMESEVLCMALSNAPSG--EQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGAS--DPTSSD 228 (290)
Q Consensus 154 -~~~l~~ei~~l~i~~~~~~--~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~--~~~~~~ 228 (290)
.-.+...+ .+....+.+ .+...++++...+|.+.+|.++..+.+..+.... .-++.+........ ...+.+
T Consensus 702 ~~~~~~~~~--~kv~~~egg~~~~~~~~~~~~~e~g~leiy~~pd~~lVf~v~~f~--~~~~~L~~~~~~~~~~~~~s~~ 777 (1366)
T KOG1896|consen 702 EAEGLQSLP--CKVDDEEGGSPEQEPYWCVFVTESGTLEIYALPDFDLVFEVDMFD--TGNRVLMDSRLRGPTTNKESED 777 (1366)
T ss_pred cccccccCC--ccccCCCCCCcccCceEEEEEcCCCceEEEccCCcceEEEeeccC--CCcceEEeecccCccccccccc
Confidence 00000111 111100000 0112677777789999999998656555554333 23444444333222 111111
Q ss_pred --------CCCCCc-cCCceEEEEEecCceEEEEEE
Q psy14552 229 --------EPAGPV-TLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 229 --------~~~~~~-~~~~~~L~iGl~dG~l~~~~~ 255 (290)
.|=+.. .....+|+.=+.+|.++-|+.
T Consensus 778 ~~l~q~~~~~L~~e~~~~e~~L~lv~~~~eil~Yka 813 (1366)
T KOG1896|consen 778 LELKQLFVNPLGSEIVFKEPHLFLVVSDNEILIYKA 813 (1366)
T ss_pred hHHHHhhccccchhhhccCCceEEEEeCceEEEEee
Confidence 111111 124567999999999988885
|
|
| >KOG1898|consensus | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.1e-11 Score=121.25 Aligned_cols=164 Identities=21% Similarity=0.310 Sum_probs=119.0
Q ss_pred CCCCceEEEEeecCceEEEEeeCCeEEEEEecCCCceecC-CCceE---EEE-EeC-------CCE-EEEEEeCCeEEEE
Q psy14552 73 ESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKES-DKKKI---VRC-AVN-------QRQ-IVIALQGGRLIYF 139 (290)
Q Consensus 73 ~~~~~~Iv~as~n~~qv~ial~~g~i~~~~~~~~~~~~~~-~~~~I---i~a-s~~-------~~~-l~Val~~~~i~~l 139 (290)
+|++.+|+.|++|++|+++|++||+++|||++..+++.+- +++++ ++| +.. +.+ +++|+.++.++++
T Consensus 536 ~P~~~~Iv~~avnr~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vrii 615 (1205)
T KOG1898|consen 536 TPERVRIVKCAVNRRQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRII 615 (1205)
T ss_pred CCCceEEEEEeecceEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEE
Confidence 7999999999999999999999999999999987777663 45555 777 422 122 9999999999999
Q ss_pred EEcCCCCCceeeeeeee---cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCC-CceeEeeEEecCCcceEEE
Q psy14552 140 EMHPETGILDECSETIQ---MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQ-DCLKQKNLQGLPDLAESLV 215 (290)
Q Consensus 140 ~l~~~~~~l~~~~~~~~---l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~-~~l~~~~~~~L~~~p~Sl~ 215 (290)
+++++ ..|..+. ... .|.+..++.+.....+.....||++|+.+|.+.++.+|.- +.|.+.+...||..|..+.
T Consensus 616 sL~p~-d~l~~ls-~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~~id~v~G~l~d~rtR~lG~~pvkLf 693 (1205)
T KOG1898|consen 616 SLDPS-DCLQPLS-VQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRFVIDTVTGQLLDIRTRFLGLRPVKLF 693 (1205)
T ss_pred EecCc-ceEEEcc-ccccCCCccceEEEEecccCCccceeEEEEecccccEEEEEEecccccceeeeheeeeccccceEE
Confidence 99983 4443321 112 3445555555433211124789999999999999999874 5688888899999999888
Q ss_pred EEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEE
Q psy14552 216 MIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRM 253 (290)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~ 253 (290)
.+.|..+ ...|...-|++.++.+
T Consensus 694 ~~~~~~~---------------s~vL~lSsr~wl~y~~ 716 (1205)
T KOG1898|consen 694 PISMRGQ---------------SDVLALSSRPWLLYTY 716 (1205)
T ss_pred EEeecCc---------------ceeEEecCChhhhhhh
Confidence 7776432 3345666666655544
|
|
| >KOG1897|consensus | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.8e-10 Score=115.43 Aligned_cols=161 Identities=22% Similarity=0.286 Sum_probs=121.2
Q ss_pred EEeeCCCeEEEEecCCeEEEeecCcceeeeccCCCCCceEEEEeecCceEEEEeeCCeEEEEEecCCCceecCCCceE--
Q psy14552 40 CSAMGDNSIVQVYPDGIRHIGAKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKI-- 117 (290)
Q Consensus 40 ~~~~~~~~ivQVt~~~v~l~~~~~~~~~~~~~~~~~~~~Iv~as~n~~qv~ial~~g~i~~~~~~~~~~~~~~~~~~I-- 117 (290)
.-|+..+.|.-+...+.+- . |. ||.++.|.+|++|.-||++|..++.++|+++++.. +.+..++++
T Consensus 464 lvQvTs~~iRl~ss~~~~~-----~-W~-----~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~ 531 (1096)
T KOG1897|consen 464 LVQVTSNSIRLVSSAGLRS-----E-WR-----PPGKITIGVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEY 531 (1096)
T ss_pred EEEEecccEEEEcchhhhh-----c-cc-----CCCceEEEEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecc
Confidence 3455566677776664332 2 33 89999999999999999999999999999998554 777777777
Q ss_pred -EEE-EeC-----CC---EEEEEEeCCeEEEEEEcCCCCCceee--eeeeecCcceeEEEeeeCCCCCccccEEEEEeCC
Q psy14552 118 -VRC-AVN-----QR---QIVIALQGGRLIYFEMHPETGILDEC--SETIQMESEVLCMALSNAPSGEQMSRFLAVGLAD 185 (290)
Q Consensus 118 -i~a-s~~-----~~---~l~Val~~~~i~~l~l~~~~~~l~~~--~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~d 185 (290)
++| +.+ +. +++||+|+..+..+...|+ ..+... +.-..+|++|.+..+.. ...||.|+++|
T Consensus 532 evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd-~~~~~~~~l~~~~iPRSIl~~~~e~------d~~yLlvalgd 604 (1096)
T KOG1897|consen 532 EVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPD-LILITHEQLSGEIIPRSILLTTFEG------DIHYLLVALGD 604 (1096)
T ss_pred eeEEEecccCCCCCCcceEEEEEeecceEEEEEECCC-cceeeeeccCCCccchheeeEEeec------cceEEEEEcCC
Confidence 888 532 22 4999999888777766653 322111 11224899999988862 26899999999
Q ss_pred CeEEEEEeCCC-CceeEeeEEecCCcceEEEEEEe
Q psy14552 186 NTVRLISLAPQ-DCLKQKNLQGLPDLAESLVMIEM 219 (290)
Q Consensus 186 g~v~i~~l~~~-~~l~~~~~~~L~~~p~Sl~~~~~ 219 (290)
|.+.+|.++.. ..+.+.++..||+.|.++.-..+
T Consensus 605 G~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~s 639 (1096)
T KOG1897|consen 605 GALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSS 639 (1096)
T ss_pred ceEEEEEEEcccceEccccccccCCCCcEEEEEee
Confidence 99999999864 46888888999999999987765
|
|
| >COG5161 SFT1 Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.21 E-value=5.6e-06 Score=84.57 Aligned_cols=100 Identities=13% Similarity=0.191 Sum_probs=84.2
Q ss_pred eEEEEEcCCceEEEEeCCEEEEeecCCccCCCCeEEEEeeCCC-eEEEEecCCeEEEeecCcceeeeccCCCCCceEEEE
Q psy14552 4 AYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDN-SIVQVYPDGIRHIGAKNTTWKVSDKKESDKKKIVRC 82 (290)
Q Consensus 4 ~ylvlS~~~~T~vl~~~~~~~e~~~~gf~~~~~Ti~~~~~~~~-~ivQVt~~~v~l~~~~~~~~~~~~~~~~~~~~Iv~a 82 (290)
.|.++|...+|.||+-++++.+.....|..+..|++++.++++ .+|||||+..+++|.+-.. ++-.+ -+.+-|++.
T Consensus 559 ~~~~ls~~s~S~If~~~e~f~l~~~g~~~rd~~Tl~~~~fgee~rvVQvtp~~l~~yD~~lR~--l~~~~-F~~~~V~~~ 635 (1319)
T COG5161 559 DFYILSRVSDSRIFRWSEEFLLEVSGEYTRDVNTLLFVEFGEENRVVQVTPSYLLRYDQDLRM--LGRVE-FASRAVEAR 635 (1319)
T ss_pred eEEEeecccccceeeccccceeeecceeeccccEEEeeeccCcceEEEecchHhhhhccccee--eeeEe-eceeeeEEE
Confidence 5899999999999999999999998999999999999999985 7999999999999865211 11111 234478999
Q ss_pred eecCceEEEEeeCCeEEEEEecCC
Q psy14552 83 AVNQRQIVIALQGGRLIYFEMHPV 106 (290)
Q Consensus 83 s~n~~qv~ial~~g~i~~~~~~~~ 106 (290)
|+.||++++...+|.+..|++++.
T Consensus 636 Sv~Dp~ilvv~~~g~i~~f~~~ek 659 (1319)
T COG5161 636 SVRDPLILVVRDSGKILTFYDREK 659 (1319)
T ss_pred eccCCEEEEEEecCceEEEEehhh
Confidence 999999999999999999998754
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.069 Score=49.55 Aligned_cols=133 Identities=14% Similarity=0.133 Sum_probs=86.8
Q ss_pred EeCCCEEEEEEe-CCeEEEEEEcCCCCCceeeeeeee-cCc------ceeEEEeeeCCCCCccccEEEEEeC-CCeEEEE
Q psy14552 121 AVNQRQIVIALQ-GGRLIYFEMHPETGILDECSETIQ-MES------EVLCMALSNAPSGEQMSRFLAVGLA-DNTVRLI 191 (290)
Q Consensus 121 s~~~~~l~Val~-~~~i~~l~l~~~~~~l~~~~~~~~-l~~------ei~~l~i~~~~~~~~~~~~l~VGl~-dg~v~i~ 191 (290)
+.++..+.|+.. +++|.++.+++.++.+... .... +|. -.+.+.+.+ ...+++|+.. ++.|.+|
T Consensus 183 ~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~i~~~p------dg~~lyv~~~~~~~I~v~ 255 (330)
T PRK11028 183 HPNQQYAYCVNELNSSVDVWQLKDPHGEIECV-QTLDMMPADFSDTRWAADIHITP------DGRHLYACDRTASLISVF 255 (330)
T ss_pred CCCCCEEEEEecCCCEEEEEEEeCCCCCEEEE-EEEecCCCcCCCCccceeEEECC------CCCEEEEecCCCCeEEEE
Confidence 456667777765 8899999998532444332 2222 222 222344443 2468889875 8899999
Q ss_pred EeCCCC-ceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEec-CceEEEEEEeCCCCcccccceEE
Q psy14552 192 SLAPQD-CLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQ-NGALLRMVVDQTSGDLSDNRMRY 269 (290)
Q Consensus 192 ~l~~~~-~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~-dG~l~~~~~d~~~~~l~~~~~~~ 269 (290)
.++++. .++.+.....+..|+.+.+.. ...+|+++-+ +|.+.-|++|..++.|.......
T Consensus 256 ~i~~~~~~~~~~~~~~~~~~p~~~~~~~------------------dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~~~ 317 (330)
T PRK11028 256 SVSEDGSVLSFEGHQPTETQPRGFNIDH------------------SGKYLIAAGQKSHHISVYEIDGETGLLTELGRYA 317 (330)
T ss_pred EEeCCCCeEEEeEEEeccccCCceEECC------------------CCCEEEEEEccCCcEEEEEEcCCCCcEEEccccc
Confidence 997653 455555455555677764442 2345888876 99999999998888876666666
Q ss_pred ecCcceEEE
Q psy14552 270 LGSRPVKLF 278 (290)
Q Consensus 270 lG~~pv~l~ 278 (290)
.|..|+-+.
T Consensus 318 ~g~~P~~~~ 326 (330)
T PRK11028 318 VGQGPMWVS 326 (330)
T ss_pred cCCCceEEE
Confidence 798887663
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.07 Score=49.66 Aligned_cols=167 Identities=16% Similarity=0.180 Sum_probs=97.2
Q ss_pred CceEEEEee---------C-CeEEEEEecCC----CceecCCCceE---EEE-EeCCCEEEEEEeCCeEEEEEEcCCCCC
Q psy14552 86 QRQIVIALQ---------G-GRLIYFEMHPV----SDKKESDKKKI---VRC-AVNQRQIVIALQGGRLIYFEMHPETGI 147 (290)
Q Consensus 86 ~~qv~ial~---------~-g~i~~~~~~~~----~~~~~~~~~~I---i~a-s~~~~~l~Val~~~~i~~l~l~~~~~~ 147 (290)
.++++|.++ . |+|+.|++... .++......++ +.| +.-+.++++| .++.|++++++.+ ..
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~-~g~~l~v~~l~~~-~~ 119 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVA-VGNKLYVYDLDNS-KT 119 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEE-ETTEEEEEEEETT-SS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEe-ecCEEEEEEccCc-cc
Confidence 366666655 2 99999999763 23332111112 333 3335566666 5889999999973 22
Q ss_pred ceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCC-ceeEeeEEecCCcceEEEEEEecCCCCCC
Q psy14552 148 LDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQD-CLKQKNLQGLPDLAESLVMIEMGASDPTS 226 (290)
Q Consensus 148 l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~-~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~ 226 (290)
+... .....+.-++++... ..+++||.--..+.++.+++.. .|..+++.. .|..+.-+.+-.
T Consensus 120 l~~~-~~~~~~~~i~sl~~~--------~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~---~~~~v~~~~~l~----- 182 (321)
T PF03178_consen 120 LLKK-AFYDSPFYITSLSVF--------KNYILVGDAMKSVSLLRYDEENNKLILVARDY---QPRWVTAAEFLV----- 182 (321)
T ss_dssp EEEE-EEE-BSSSEEEEEEE--------TTEEEEEESSSSEEEEEEETTTE-EEEEEEES---S-BEEEEEEEE------
T ss_pred chhh-heecceEEEEEEecc--------ccEEEEEEcccCEEEEEEEccCCEEEEEEecC---CCccEEEEEEec-----
Confidence 4332 233344445444432 4599999986666777776543 466665433 366665555421
Q ss_pred CCCCCCCccCCceEEEEEecCceEEEEEEeCCCC-------cccccceEEecCcceEEEEEE
Q psy14552 227 SDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSG-------DLSDNRMRYLGSRPVKLFKIR 281 (290)
Q Consensus 227 ~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~~~~-------~l~~~~~~~lG~~pv~l~~~~ 281 (290)
++. .+++|=++|.+.-|..++... .|......++|....++.+..
T Consensus 183 ---------d~~-~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~ 234 (321)
T PF03178_consen 183 ---------DED-TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGS 234 (321)
T ss_dssp ---------SSS-EEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--
T ss_pred ---------CCc-EEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEE
Confidence 223 799999999999999875322 344456778999998886655
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.11 Score=49.30 Aligned_cols=210 Identities=15% Similarity=0.165 Sum_probs=115.0
Q ss_pred eEEEEeeCCCeEEEEecCCeEEEeec--CcceeeeccCCCCCceEEEEeecCc--eEEEE--eeCCeEEEEEecCCCcee
Q psy14552 37 TLCCSAMGDNSIVQVYPDGIRHIGAK--NTTWKVSDKKESDKKKIVRCAVNQR--QIVIA--LQGGRLIYFEMHPVSDKK 110 (290)
Q Consensus 37 Ti~~~~~~~~~ivQVt~~~v~l~~~~--~~~~~~~~~~~~~~~~Iv~as~n~~--qv~ia--l~~g~i~~~~~~~~~~~~ 110 (290)
.|.+-.|...++|=+-++.|-++|.+ +...+| +..||..+.+.+-|.|.. |++.- ...|+|+.|.... +.
T Consensus 89 ~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI-~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n---l~ 164 (391)
T KOG2110|consen 89 SILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTI-ETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN---LQ 164 (391)
T ss_pred ceEEEEEccceEEEEEcccEEEEecccceeehhh-hccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc---ce
Confidence 44555555556666666666666543 111111 122466666666666654 55432 3347888776432 22
Q ss_pred cC----CCceEEEE-E--eCCCEEEEEEeCCe-EEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEE
Q psy14552 111 ES----DKKKIVRC-A--VNQRQIVIALQGGR-LIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVG 182 (290)
Q Consensus 111 ~~----~~~~Ii~a-s--~~~~~l~Val~~~~-i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VG 182 (290)
+. .+..=++| + .++..+|-|...|+ ||+|.+++ ...+.|+ .+=..|..|..++|.+. ..||.+.
T Consensus 165 ~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~-G~kl~eF-RRG~~~~~IySL~Fs~d------s~~L~~s 236 (391)
T KOG2110|consen 165 PVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE-GQKLYEF-RRGTYPVSIYSLSFSPD------SQFLAAS 236 (391)
T ss_pred eeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC-ccEeeee-eCCceeeEEEEEEECCC------CCeEEEe
Confidence 21 22222555 4 44666888766554 68999876 2235454 22235788888888753 5799999
Q ss_pred eCCCeEEEEEeCCCC--cee----------EeeEE---ecC-------CcceEEEEEEecCCCCCCCCCCCCCccCCceE
Q psy14552 183 LADNTVRLISLAPQD--CLK----------QKNLQ---GLP-------DLAESLVMIEMGASDPTSSDEPAGPVTLGNLY 240 (290)
Q Consensus 183 l~dg~v~i~~l~~~~--~l~----------~~~~~---~L~-------~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (290)
...++|++|+|+... ..+ ...+. .++ ++-|+.+-.++...+-.. + -.-.......+
T Consensus 237 S~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~-~-~~l~~~~~~~~ 314 (391)
T KOG2110|consen 237 SNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKN-I-CSLSSIQKIPR 314 (391)
T ss_pred cCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccc-e-EEeeccCCCCE
Confidence 999999999997421 110 01100 111 112444444432221000 0 00000124567
Q ss_pred EEEEecCceEEEEEEeCCCC
Q psy14552 241 LYVGLQNGALLRMVVDQTSG 260 (290)
Q Consensus 241 L~iGl~dG~l~~~~~d~~~~ 260 (290)
+.|+.-||+++.|++++.+|
T Consensus 315 v~vas~dG~~y~y~l~~~~g 334 (391)
T KOG2110|consen 315 VLVASYDGHLYSYRLPPKEG 334 (391)
T ss_pred EEEEEcCCeEEEEEcCCCCC
Confidence 99999999999999998644
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.3 Score=46.03 Aligned_cols=220 Identities=16% Similarity=0.240 Sum_probs=123.6
Q ss_pred CccCCCCeEEEEeeCCCe--EEEEecCC-eEEEeecCcceeeeccCC----CCCceEEEEee--cCceEEEEeeC-CeEE
Q psy14552 30 GFYGTTPTLCCSAMGDNS--IVQVYPDG-IRHIGAKNTTWKVSDKKE----SDKKKIVRCAV--NQRQIVIALQG-GRLI 99 (290)
Q Consensus 30 gf~~~~~Ti~~~~~~~~~--ivQVt~~~-v~l~~~~~~~~~~~~~~~----~~~~~Iv~as~--n~~qv~ial~~-g~i~ 99 (290)
.+..+...|++++..+|. ++.+.+.+ +.... +.+......| ..+.+.=.+.. ..+++.++-.+ .+|.
T Consensus 93 ~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~---~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~ 169 (345)
T PF10282_consen 93 AVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVV---QTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVY 169 (345)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSEEEEEE---EEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred EEecCCCEEEEEEccCCeEEEEEccCCcccceee---eecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEE
Confidence 344678899999988885 56666543 22210 0111000001 12222222222 24455554333 4566
Q ss_pred EEEecCCC-ceec------C--CCceEEEEEeCCCEEEEEE-eCCeEEEEEEcCCCCCceeeeeeee-cCc------cee
Q psy14552 100 YFEMHPVS-DKKE------S--DKKKIVRCAVNQRQIVIAL-QGGRLIYFEMHPETGILDECSETIQ-MES------EVL 162 (290)
Q Consensus 100 ~~~~~~~~-~~~~------~--~~~~Ii~as~~~~~l~Val-~~~~i~~l~l~~~~~~l~~~~~~~~-l~~------ei~ 162 (290)
.|.++... .+.+ + .+-+-++-+.++..+.|.. .+++|..+++++..+.+... +... +|. ..+
T Consensus 170 ~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~ 248 (345)
T PF10282_consen 170 VYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEI-QTISTLPEGFTGENAPA 248 (345)
T ss_dssp EEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE-EEEESCETTSCSSSSEE
T ss_pred EEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEE-EEeeeccccccccCCce
Confidence 66665432 2322 1 1122233345566666655 37899999998434555443 2232 221 344
Q ss_pred EEEeeeCCCCCccccEEEEEeC-CCeEEEEEeCCC-CceeEeeEEec-CCcceEEEEEEecCCCCCCCCCCCCCccCCce
Q psy14552 163 CMALSNAPSGEQMSRFLAVGLA-DNTVRLISLAPQ-DCLKQKNLQGL-PDLAESLVMIEMGASDPTSSDEPAGPVTLGNL 239 (290)
Q Consensus 163 ~l~i~~~~~~~~~~~~l~VGl~-dg~v~i~~l~~~-~~l~~~~~~~L-~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (290)
-+.+.+. ..||.|+.. +++|.+|.+++. +.|+.+..... +..|+.+.+.. .++
T Consensus 249 ~i~ispd------g~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~-----------------~g~- 304 (345)
T PF10282_consen 249 EIAISPD------GRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSP-----------------DGR- 304 (345)
T ss_dssp EEEE-TT------SSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-T-----------------TSS-
T ss_pred eEEEecC------CCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeC-----------------CCC-
Confidence 5555432 478999885 889999999654 56887766665 56799998853 334
Q ss_pred EEEEEe-cCceEEEEEEeCCCCcccccceEEecCcceEE
Q psy14552 240 YLYVGL-QNGALLRMVVDQTSGDLSDNRMRYLGSRPVKL 277 (290)
Q Consensus 240 ~L~iGl-~dG~l~~~~~d~~~~~l~~~~~~~lG~~pv~l 277 (290)
+|+++- .++.+..|++|..+|.|.......-...|+-+
T Consensus 305 ~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci 343 (345)
T PF10282_consen 305 YLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCI 343 (345)
T ss_dssp EEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEE
T ss_pred EEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEE
Confidence 577765 67788889999999998765444455555543
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.28 Score=48.55 Aligned_cols=110 Identities=16% Similarity=0.201 Sum_probs=71.2
Q ss_pred CCceEEEEeecCc-eEEEEeeCCeEEEEE-ecCCCceecCCCceE--EEEEeCCCEEEEEEeCCeEEEEEEcCCCCCcee
Q psy14552 75 DKKKIVRCAVNQR-QIVIALQGGRLIYFE-MHPVSDKKESDKKKI--VRCAVNQRQIVIALQGGRLIYFEMHPETGILDE 150 (290)
Q Consensus 75 ~~~~Iv~as~n~~-qv~ial~~g~i~~~~-~~~~~~~~~~~~~~I--i~as~~~~~l~Val~~~~i~~l~l~~~~~~l~~ 150 (290)
..++...|..++. .+++++ .++|+.+. ...... .|-+-+- +|.+..++.++||..|+.+++++|.. +.+.+
T Consensus 405 g~QP~~lav~~d~~~avv~~-~~~iv~l~~~~~~~~--~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g--~~l~e 479 (603)
T KOG0318|consen 405 GSQPKGLAVLSDGGTAVVAC-ISDIVLLQDQTKVSS--IPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSG--DELKE 479 (603)
T ss_pred CCCceeEEEcCCCCEEEEEe-cCcEEEEecCCccee--eccccccceEEEcCCCCEEEEecccceEEEEEecC--Ccccc
Confidence 4556666666664 555555 44555554 211111 1111111 22245567799999999999999986 23434
Q ss_pred eeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCC
Q psy14552 151 CSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAP 195 (290)
Q Consensus 151 ~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~ 195 (290)
..+....+.+|+++++.|. ..||++|-.++.+..|++..
T Consensus 480 e~~~~~h~a~iT~vaySpd------~~yla~~Da~rkvv~yd~~s 518 (603)
T KOG0318|consen 480 EAKLLEHRAAITDVAYSPD------GAYLAAGDASRKVVLYDVAS 518 (603)
T ss_pred eeeeecccCCceEEEECCC------CcEEEEeccCCcEEEEEccc
Confidence 3334567889999999764 57999999999999999864
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.49 Score=44.72 Aligned_cols=135 Identities=16% Similarity=0.206 Sum_probs=88.1
Q ss_pred EEEEeCCCEEEEEEe-CCeEEEEEEcCCCCCceeeeeee-ecC------cceeEEEeeeCCCCCccccEEEEEeC-CCeE
Q psy14552 118 VRCAVNQRQIVIALQ-GGRLIYFEMHPETGILDECSETI-QME------SEVLCMALSNAPSGEQMSRFLAVGLA-DNTV 188 (290)
Q Consensus 118 i~as~~~~~l~Val~-~~~i~~l~l~~~~~~l~~~~~~~-~l~------~ei~~l~i~~~~~~~~~~~~l~VGl~-dg~v 188 (290)
++-..|+..+-+-+. +++|.+++.++..+.+.++. .+ .+| +.-+.+.+.+ ...||.+.-. ..+|
T Consensus 196 i~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ-~i~tlP~dF~g~~~~aaIhis~------dGrFLYasNRg~dsI 268 (346)
T COG2706 196 IVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQ-TIDTLPEDFTGTNWAAAIHISP------DGRFLYASNRGHDSI 268 (346)
T ss_pred EEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEee-eeccCccccCCCCceeEEEECC------CCCEEEEecCCCCeE
Confidence 444455555444433 88899999887435565542 22 222 3344455542 2478888763 5589
Q ss_pred EEEEeCCCC-ceeEeeEEecCCc-ceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCc-eEEEEEEeCCCCccccc
Q psy14552 189 RLISLAPQD-CLKQKNLQGLPDL-AESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNG-ALLRMVVDQTSGDLSDN 265 (290)
Q Consensus 189 ~i~~l~~~~-~l~~~~~~~L~~~-p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG-~l~~~~~d~~~~~l~~~ 265 (290)
..|++++.+ .|+.+.......+ ||..-+.. ...+|.+...++ .+..|.+|+.+|.|+..
T Consensus 269 ~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~------------------~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~ 330 (346)
T COG2706 269 AVFSVDPDGGKLELVGITPTEGQFPRDFNINP------------------SGRFLIAANQKSDNITVFERDKETGRLTLL 330 (346)
T ss_pred EEEEEcCCCCEEEEEEEeccCCcCCccceeCC------------------CCCEEEEEccCCCcEEEEEEcCCCceEEec
Confidence 999999875 4777766665554 99886663 233477776665 55669999999999876
Q ss_pred ceEEecCcceEE
Q psy14552 266 RMRYLGSRPVKL 277 (290)
Q Consensus 266 ~~~~lG~~pv~l 277 (290)
....-+..||=+
T Consensus 331 ~~~~~~p~Pvcv 342 (346)
T COG2706 331 GRYAVVPEPVCV 342 (346)
T ss_pred ccccCCCCcEEE
Confidence 666778888765
|
|
| >KOG0306|consensus | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.067 Score=54.85 Aligned_cols=139 Identities=22% Similarity=0.369 Sum_probs=88.6
Q ss_pred eEEEEecCCeEEEeecCcceeeeccCC-------CCCceEEEEeec---CceEEEEeeCCeEEEEEecCCCceec--CCC
Q psy14552 47 SIVQVYPDGIRHIGAKNTTWKVSDKKE-------SDKKKIVRCAVN---QRQIVIALQGGRLIYFEMHPVSDKKE--SDK 114 (290)
Q Consensus 47 ~ivQVt~~~v~l~~~~~~~~~~~~~~~-------~~~~~Iv~as~n---~~qv~ial~~g~i~~~~~~~~~~~~~--~~~ 114 (290)
.-+-|+.+++.+.........+|+.+. +.+ ++.|+.- |+||++...+|++-.|.+... ++.+ +.+
T Consensus 377 Rsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~-~l~Eti~AH 453 (888)
T KOG0306|consen 377 RSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASA-SLVETIRAH 453 (888)
T ss_pred eEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehh-hhhhhhhcc
Confidence 355666777776666555666777663 233 3333332 999999999999999988632 2222 111
Q ss_pred c-eE--EEEEeCCCEEEEEEeCCeEEEEEEc--C-CCCC------ceeeeeeeecCcceeEEEeeeCCCCCccccEEEEE
Q psy14552 115 K-KI--VRCAVNQRQIVIALQGGRLIYFEMH--P-ETGI------LDECSETIQMESEVLCMALSNAPSGEQMSRFLAVG 182 (290)
Q Consensus 115 ~-~I--i~as~~~~~l~Val~~~~i~~l~l~--~-~~~~------l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VG 182 (290)
- .| ++-..++..++.|..|.++.+.... . ..+. +.+ ..+++++.+++|+++.|. ..||+||
T Consensus 454 dgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~-~rtLel~ddvL~v~~Spd------gk~LaVs 526 (888)
T KOG0306|consen 454 DGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKH-TRTLELEDDVLCVSVSPD------GKLLAVS 526 (888)
T ss_pred ccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeecc-ceEEeccccEEEEEEcCC------CcEEEEE
Confidence 1 12 2223444557777778888764322 1 0011 111 134569999999999864 5899999
Q ss_pred eCCCeEEEEEeCC
Q psy14552 183 LADNTVRLISLAP 195 (290)
Q Consensus 183 l~dg~v~i~~l~~ 195 (290)
+-|+++.+|.+|.
T Consensus 527 LLdnTVkVyflDt 539 (888)
T KOG0306|consen 527 LLDNTVKVYFLDT 539 (888)
T ss_pred eccCeEEEEEecc
Confidence 9999999999984
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=96.64 E-value=1 Score=46.51 Aligned_cols=155 Identities=14% Similarity=0.193 Sum_probs=100.1
Q ss_pred ccCCCCCceEEEEeecCceEEEEeeCCeEEEEEecCCC---ceecCCCceEEEEEeC--CCEEEEEEe-CCeEEEEEEcC
Q psy14552 70 DKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVS---DKKESDKKKIVRCAVN--QRQIVIALQ-GGRLIYFEMHP 143 (290)
Q Consensus 70 ~~~~~~~~~Iv~as~n~~qv~ial~~g~i~~~~~~~~~---~~~~~~~~~Ii~as~~--~~~l~Val~-~~~i~~l~l~~ 143 (290)
+-++-.+.+.++-+.+++-++-+.-+|++-.+.+...- .+..|+.++..+-+.+ +.-++.|.. ...|.+.++..
T Consensus 388 FteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qT 467 (893)
T KOG0291|consen 388 FTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQT 467 (893)
T ss_pred eccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeec
Confidence 33456788888899999999999999999877664322 3444777766444444 444443433 44777778764
Q ss_pred CCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCC-CCceeEeeEEecCCcceEEEEEEecCC
Q psy14552 144 ETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAP-QDCLKQKNLQGLPDLAESLVMIEMGAS 222 (290)
Q Consensus 144 ~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~-~~~l~~~~~~~L~~~p~Sl~~~~~~~~ 222 (290)
|+|-+++.- -+.-|++++|.+. ...|+-|.||.+|++|.+=. .+..+.+. ++..++-+.|.++
T Consensus 468 --GqllDiLsG--HEgPVs~l~f~~~------~~~LaS~SWDkTVRiW~if~s~~~vEtl~------i~sdvl~vsfrPd 531 (893)
T KOG0291|consen 468 --GQLLDILSG--HEGPVSGLSFSPD------GSLLASGSWDKTVRIWDIFSSSGTVETLE------IRSDVLAVSFRPD 531 (893)
T ss_pred --CeeeehhcC--CCCcceeeEEccc------cCeEEeccccceEEEEEeeccCceeeeEe------eccceeEEEEcCC
Confidence 766565432 3456788888653 35899999999999999732 22333332 3344444554322
Q ss_pred CCCCCCCCCCCccCCceEEEEEecCceEEEEEE
Q psy14552 223 DPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
+.- |-+++-||.+--|..
T Consensus 532 --------------G~e-laVaTldgqItf~d~ 549 (893)
T KOG0291|consen 532 --------------GKE-LAVATLDGQITFFDI 549 (893)
T ss_pred --------------CCe-EEEEEecceEEEEEh
Confidence 232 888999999888875
|
|
| >KOG2111|consensus | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.61 Score=43.64 Aligned_cols=145 Identities=17% Similarity=0.278 Sum_probs=79.7
Q ss_pred EeeCCCeEEEEecCCeEEEeec---CcceeeeccCCCCCceEEEEeecCceEEEEeeC---CeEEEEEecCCC---ceec
Q psy14552 41 SAMGDNSIVQVYPDGIRHIGAK---NTTWKVSDKKESDKKKIVRCAVNQRQIVIALQG---GRLIYFEMHPVS---DKKE 111 (290)
Q Consensus 41 ~~~~~~~ivQVt~~~v~l~~~~---~~~~~~~~~~~~~~~~Iv~as~n~~qv~ial~~---g~i~~~~~~~~~---~~~~ 111 (290)
-.+..+.||=|.++.|-++... ++...+-...-|.| ..+..-...--++|+.+ |+|=...+.... ....
T Consensus 100 V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkG--lC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I 177 (346)
T KOG2111|consen 100 VKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKG--LCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSII 177 (346)
T ss_pred EEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCc--eEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEE
Confidence 3456678899999988887644 22222222222555 22222224445566666 443322221100 0011
Q ss_pred CCCceEEEE-EeC--CCEEEEEEeCCe-EEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCe
Q psy14552 112 SDKKKIVRC-AVN--QRQIVIALQGGR-LIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNT 187 (290)
Q Consensus 112 ~~~~~Ii~a-s~~--~~~l~Val~~~~-i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~ 187 (290)
+.+..-|+| +-| +..+|-|...|+ ||+|.-.. ...+.|. .+=.-+-+|-||+|.+. +.+|+|...-|+
T Consensus 178 ~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~-g~~l~E~-RRG~d~A~iy~iaFSp~------~s~LavsSdKgT 249 (346)
T KOG2111|consen 178 NAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED-GTLLQEL-RRGVDRADIYCIAFSPN------SSWLAVSSDKGT 249 (346)
T ss_pred EcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC-CcEeeee-ecCCchheEEEEEeCCC------ccEEEEEcCCCe
Confidence 122222666 544 344555555554 67887554 1234443 22234678999999753 789999999999
Q ss_pred EEEEEeCC
Q psy14552 188 VRLISLAP 195 (290)
Q Consensus 188 v~i~~l~~ 195 (290)
+++|.+.+
T Consensus 250 lHiF~l~~ 257 (346)
T KOG2111|consen 250 LHIFSLRD 257 (346)
T ss_pred EEEEEeec
Confidence 99999964
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.26 Score=44.40 Aligned_cols=145 Identities=17% Similarity=0.276 Sum_probs=83.4
Q ss_pred EEeecCceEEEEeeCCeEEEEEecCCCceecC-CCceEEEEEeCC-CEEEEEEeCCeEEEEEEcCCCCCcee---ee--e
Q psy14552 81 RCAVNQRQIVIALQGGRLIYFEMHPVSDKKES-DKKKIVRCAVNQ-RQIVIALQGGRLIYFEMHPETGILDE---CS--E 153 (290)
Q Consensus 81 ~as~n~~qv~ial~~g~i~~~~~~~~~~~~~~-~~~~Ii~as~~~-~~l~Val~~~~i~~l~l~~~~~~l~~---~~--~ 153 (290)
++...+..+++++++| |++++......|... ....|.-...-. -.+++.++|+.++++.++.- ..... .. +
T Consensus 2 c~~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l-~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 2 CADSWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLSDGQLYVYDLDSL-EPVSTSAPLAFPK 79 (275)
T ss_pred CcccCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEcCCccEEEEchhh-ccccccccccccc
Confidence 4555678899999998 776776333444441 222243333332 23566677899999887741 00000 00 0
Q ss_pred ------eeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCC-Cce-eEeeEEecCCcceEEEEEEecCCCCC
Q psy14552 154 ------TIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQ-DCL-KQKNLQGLPDLAESLVMIEMGASDPT 225 (290)
Q Consensus 154 ------~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~-~~l-~~~~~~~L~~~p~Sl~~~~~~~~~~~ 225 (290)
.......+.+.+... +.....+|+|+... .+.+|.+... ..+ ...++..++..|.++....
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~---~~~~~~~L~va~kk-~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~------- 148 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNG---GHEGSRRLCVAVKK-KILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLG------- 148 (275)
T ss_pred cccccccccccCCeeEEeecc---ccccceEEEEEECC-EEEEEEEECCcccccceeEEEEcCCCcEEEEEeC-------
Confidence 111122333333111 12246788888865 7888888653 334 5667778888999888773
Q ss_pred CCCCCCCCccCCceEEEEEecCceEE
Q psy14552 226 SSDEPAGPVTLGNLYLYVGLQNGALL 251 (290)
Q Consensus 226 ~~~~~~~~~~~~~~~L~iGl~dG~l~ 251 (290)
..+.+|+++|+.+
T Consensus 149 -------------~~i~v~~~~~f~~ 161 (275)
T PF00780_consen 149 -------------NKICVGTSKGFYL 161 (275)
T ss_pred -------------CEEEEEeCCceEE
Confidence 2488999888543
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.62 Score=39.64 Aligned_cols=148 Identities=12% Similarity=0.193 Sum_probs=81.0
Q ss_pred eEEEEeecC--ceEEEEeeCCeEEEEEecCCCce-ecC-CCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceee
Q psy14552 78 KIVRCAVNQ--RQIVIALQGGRLIYFEMHPVSDK-KES-DKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDEC 151 (290)
Q Consensus 78 ~Iv~as~n~--~qv~ial~~g~i~~~~~~~~~~~-~~~-~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~ 151 (290)
+|.+.+.++ +.++.+..+|.+..+.+...... ... ....+..+ ..++..++++..++.+.++.+... ..+
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~-~~~--- 86 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG-ECV--- 86 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc-cce---
Confidence 455555553 55666666788887777543211 111 11223233 334456788877999999988751 111
Q ss_pred eeee-ecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCC
Q psy14552 152 SETI-QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEP 230 (290)
Q Consensus 152 ~~~~-~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~ 230 (290)
... ..+..+.++.+.+. ..++++|..||.+.+|.+.......... .....+.++...
T Consensus 87 -~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~i~~~~~~------------- 144 (289)
T cd00200 87 -RTLTGHTSYVSSVAFSPD------GRILSSSSRDKTIKVWDVETGKCLTTLR--GHTDWVNSVAFS------------- 144 (289)
T ss_pred -EEEeccCCcEEEEEEcCC------CCEEEEecCCCeEEEEECCCcEEEEEec--cCCCcEEEEEEc-------------
Confidence 122 23446888887532 3567777779999999986322222111 111122233222
Q ss_pred CCCccCCceEEEEEecCceEEEEEEe
Q psy14552 231 AGPVTLGNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 231 ~~~~~~~~~~L~iGl~dG~l~~~~~d 256 (290)
....+++.|..||.+.-|.+.
T Consensus 145 -----~~~~~l~~~~~~~~i~i~d~~ 165 (289)
T cd00200 145 -----PDGTFVASSSQDGTIKLWDLR 165 (289)
T ss_pred -----CcCCEEEEEcCCCcEEEEEcc
Confidence 113457777779988887664
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.21 Score=48.44 Aligned_cols=180 Identities=16% Similarity=0.214 Sum_probs=81.2
Q ss_pred EEEEee--cCceEEEEeeCCeEEEEEecCCCcee---cCCCceEEEEEeCCCEEEEEEe--CCeEEEEEEcCCCCCceee
Q psy14552 79 IVRCAV--NQRQIVIALQGGRLIYFEMHPVSDKK---ESDKKKIVRCAVNQRQIVIALQ--GGRLIYFEMHPETGILDEC 151 (290)
Q Consensus 79 Iv~as~--n~~qv~ial~~g~i~~~~~~~~~~~~---~~~~~~Ii~as~~~~~l~Val~--~~~i~~l~l~~~~~~l~~~ 151 (290)
|...|+ ....+++++..|+++.|......... .+....+--| -+... .+.|.=++-.. ...+.+-
T Consensus 4 v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~di~~r~-~~~~~~g 75 (395)
T PF08596_consen 4 VTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFR-------RFSLNNSPGKLTDISDRA-PPSLKEG 75 (395)
T ss_dssp EEEEEEETTTTEEEEEETTS-EEEEEEEE-------------------------S--GGGSS-SEEE-GGG---TT-SEE
T ss_pred EEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccc-------cccccCCCcceEEehhhC-Ccccccc
Confidence 444444 47899999999999999886543221 0111111111 00000 11111111000 0122222
Q ss_pred eeeee----cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeE--eeEEecC----CcceEEEEEEecC
Q psy14552 152 SETIQ----MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQ--KNLQGLP----DLAESLVMIEMGA 221 (290)
Q Consensus 152 ~~~~~----l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~--~~~~~L~----~~p~Sl~~~~~~~ 221 (290)
+.+.. ....|+++++.+ .-|++||..+|.+.++.+-...-+.. ++...++ ..+.++...-|.-
T Consensus 76 f~P~~l~~~~~g~vtal~~S~-------iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~ 148 (395)
T PF08596_consen 76 FLPLTLLDAKQGPVTALKNSD-------IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTL 148 (395)
T ss_dssp EEEEEEE---S-SEEEEEE-B-------TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-
T ss_pred cCchhheeccCCcEeEEecCC-------CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEec
Confidence 22221 257888888863 46999999999999988843221111 1110011 2455554444421
Q ss_pred CCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeCCC-Ccccc---cceEEecCcceEEEEEEeC
Q psy14552 222 SDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTS-GDLSD---NRMRYLGSRPVKLFKIRCQ 283 (290)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~~~-~~l~~---~~~~~lG~~pv~l~~~~~~ 283 (290)
.+ .......|+||+..|.++.|++.+.+ +..+- ..........+.+.++...
T Consensus 149 ~~----------D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~ 204 (395)
T PF08596_consen 149 GG----------DGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINAD 204 (395)
T ss_dssp TT----------SSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETT
T ss_pred CC----------CcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECC
Confidence 11 01345789999999999999997633 32211 0112344555667777543
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.09 E-value=1.2 Score=41.36 Aligned_cols=161 Identities=12% Similarity=0.101 Sum_probs=96.6
Q ss_pred EEEEeecCceEEEEeeCCeEEEEEecCCCceecCC----CceEEEEEeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeee
Q psy14552 79 IVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESD----KKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSET 154 (290)
Q Consensus 79 Iv~as~n~~qv~ial~~g~i~~~~~~~~~~~~~~~----~~~Ii~as~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~ 154 (290)
+.+....+.+ +++..|+.|..++++....|.+.. ..-+++.+..++.++||..-..+.++..+++..+|..+ .+
T Consensus 91 V~ai~~~~~~-lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~v-a~ 168 (321)
T PF03178_consen 91 VTAICSFNGR-LVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILV-AR 168 (321)
T ss_dssp EEEEEEETTE-EEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEE-EE
T ss_pred ceEhhhhCCE-EEEeecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEE-Ee
Confidence 4455555666 555568999999987654355421 11223335557789999777788888887632346554 33
Q ss_pred eecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCC-------C-ceeEeeEEecCCcceEEEEEEecCCCCCC
Q psy14552 155 IQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQ-------D-CLKQKNLQGLPDLAESLVMIEMGASDPTS 226 (290)
Q Consensus 155 ~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~-------~-~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~ 226 (290)
-..|..++++.+-.. . ..++++-.+|.+.+++.++. . .|..+....++..+.++.-..+....
T Consensus 169 d~~~~~v~~~~~l~d-----~-~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~--- 239 (321)
T PF03178_consen 169 DYQPRWVTAAEFLVD-----E-DTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRS--- 239 (321)
T ss_dssp ESS-BEEEEEEEE-S-----S-SEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--S---
T ss_pred cCCCccEEEEEEecC-----C-cEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecC---
Confidence 345777877776521 2 37888888999999998752 1 47777778889888888555542210
Q ss_pred CCCCCCCccCCceEEEEEecCceEEEEE
Q psy14552 227 SDEPAGPVTLGNLYLYVGLQNGALLRMV 254 (290)
Q Consensus 227 ~~~~~~~~~~~~~~L~iGl~dG~l~~~~ 254 (290)
++........++.|+.+|.+..+.
T Consensus 240 ----~~~~~~~~~~i~~~T~~G~Ig~l~ 263 (321)
T PF03178_consen 240 ----GSSESPNRPQILYGTVDGSIGVLI 263 (321)
T ss_dssp ----SSS-TTEEEEEEEEETTS-EEEEE
T ss_pred ----CCCcccccceEEEEecCCEEEEEE
Confidence 000111246799999999998654
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=96.02 E-value=1 Score=44.77 Aligned_cols=157 Identities=16% Similarity=0.156 Sum_probs=90.4
Q ss_pred CCceEEEEeec--CceEEEEeeCCeEEEEEecCC--CceecCCCceEEEE-EeCC-CEEEEEEeCCeEEEEEEcCCCCC-
Q psy14552 75 DKKKIVRCAVN--QRQIVIALQGGRLIYFEMHPV--SDKKESDKKKIVRC-AVNQ-RQIVIALQGGRLIYFEMHPETGI- 147 (290)
Q Consensus 75 ~~~~Iv~as~n--~~qv~ial~~g~i~~~~~~~~--~~~~~~~~~~Ii~a-s~~~-~~l~Val~~~~i~~l~l~~~~~~- 147 (290)
-.+.|.+.+.+ ..++.-+--+|.|.+-..... ..+.+..+-..|.+ +... .++.-..||.+|+++.+..+ +.
T Consensus 319 HnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~-~~t 397 (603)
T KOG0318|consen 319 HNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDN-GYT 397 (603)
T ss_pred cccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccC-ccc
Confidence 34567777766 466777777788877665432 22332334444555 3333 33444447888888866431 10
Q ss_pred ceee-----------------------------ee------eeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEE
Q psy14552 148 LDEC-----------------------------SE------TIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLIS 192 (290)
Q Consensus 148 l~~~-----------------------------~~------~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~ 192 (290)
=.+. ++ ..++..+++|+++.+ ...+++||..||.|++|+
T Consensus 398 ~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~------~~~~vaVGG~Dgkvhvys 471 (603)
T KOG0318|consen 398 KSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP------DGSEVAVGGQDGKVHVYS 471 (603)
T ss_pred ccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC------CCCEEEEecccceEEEEE
Confidence 0000 00 011334444444443 247899999999999999
Q ss_pred eCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEe
Q psy14552 193 LAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 193 l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d 256 (290)
|......+..++....+.+..+... ....||-+|=.++.++-|.+.
T Consensus 472 l~g~~l~ee~~~~~h~a~iT~vayS------------------pd~~yla~~Da~rkvv~yd~~ 517 (603)
T KOG0318|consen 472 LSGDELKEEAKLLEHRAAITDVAYS------------------PDGAYLAAGDASRKVVLYDVA 517 (603)
T ss_pred ecCCcccceeeeecccCCceEEEEC------------------CCCcEEEEeccCCcEEEEEcc
Confidence 9765433333333434444444433 345689999999999999764
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=1.9 Score=39.92 Aligned_cols=215 Identities=11% Similarity=0.057 Sum_probs=105.9
Q ss_pred CccCCCCeEEEEeeCCCeE--EEEecCC-eEEEeecCcceeeeccCCCCCceEEEEeecCceEEEEe-eCCeEEEEEecC
Q psy14552 30 GFYGTTPTLCCSAMGDNSI--VQVYPDG-IRHIGAKNTTWKVSDKKESDKKKIVRCAVNQRQIVIAL-QGGRLIYFEMHP 105 (290)
Q Consensus 30 gf~~~~~Ti~~~~~~~~~i--vQVt~~~-v~l~~~~~~~~~~~~~~~~~~~~Iv~as~n~~qv~ial-~~g~i~~~~~~~ 105 (290)
.|.++.+.|+++...++.| .++.+++ +..... .+.+....-+..+-+++++.++. .+|.+..+.++.
T Consensus 41 ~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~---------~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 41 VISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAE---------SPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred EECCCCCEEEEEECCCCcEEEEEECCCCceEEeee---------ecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECC
Confidence 3566788999987766644 5555332 332211 11111111222233344444443 246666666653
Q ss_pred CCceec-----CC--CceEEEEEeCCCEEEEEE-eCCeEEEEEEcCCCCCceeee---eeeecCcceeEEEeeeCCCCCc
Q psy14552 106 VSDKKE-----SD--KKKIVRCAVNQRQIVIAL-QGGRLIYFEMHPETGILDECS---ETIQMESEVLCMALSNAPSGEQ 174 (290)
Q Consensus 106 ~~~~~~-----~~--~~~Ii~as~~~~~l~Val-~~~~i~~l~l~~~~~~l~~~~---~~~~l~~ei~~l~i~~~~~~~~ 174 (290)
.+.... +. +..-++.+.++..++|+. .++.|.++.++. .+.+.... .+......+-.+.+.+
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~-~g~l~~~~~~~~~~~~g~~p~~~~~~p------ 184 (330)
T PRK11028 112 DGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD-DGHLVAQEPAEVTTVEGAGPRHMVFHP------ 184 (330)
T ss_pred CCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECC-CCcccccCCCceecCCCCCCceEEECC------
Confidence 221110 11 111122245566776665 468999999876 24442210 0112233344455543
Q ss_pred cccEEEEEeC-CCeEEEEEeCCC-CceeEeeEEecCCcceEE------EEEEecCCCCCCCCCCCCCccCCceEEEEEec
Q psy14552 175 MSRFLAVGLA-DNTVRLISLAPQ-DCLKQKNLQGLPDLAESL------VMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQ 246 (290)
Q Consensus 175 ~~~~l~VGl~-dg~v~i~~l~~~-~~l~~~~~~~L~~~p~Sl------~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~ 246 (290)
...+++|..+ ++.+.+|.+++. +.++.+ +.++..|... .-+.+. ....+||++.+
T Consensus 185 dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~i~~~---------------pdg~~lyv~~~ 247 (330)
T PRK11028 185 NQQYAYCVNELNSSVDVWQLKDPHGEIECV--QTLDMMPADFSDTRWAADIHIT---------------PDGRHLYACDR 247 (330)
T ss_pred CCCEEEEEecCCCEEEEEEEeCCCCCEEEE--EEEecCCCcCCCCccceeEEEC---------------CCCCEEEEecC
Confidence 2468888886 999999999753 344443 2333222211 011111 12346888865
Q ss_pred -CceEEEEEEeCCCCcccccceEEecCcceEE
Q psy14552 247 -NGALLRMVVDQTSGDLSDNRMRYLGSRPVKL 277 (290)
Q Consensus 247 -dG~l~~~~~d~~~~~l~~~~~~~lG~~pv~l 277 (290)
++.+.-|.++...+.+.-......|..|-.+
T Consensus 248 ~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~ 279 (330)
T PRK11028 248 TASLISVFSVSEDGSVLSFEGHQPTETQPRGF 279 (330)
T ss_pred CCCeEEEEEEeCCCCeEEEeEEEeccccCCce
Confidence 6778888887655443323334445444443
|
|
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=95.51 E-value=1.9 Score=41.13 Aligned_cols=152 Identities=14% Similarity=0.248 Sum_probs=94.8
Q ss_pred ceEEEEeecCceEEEEeeCCeEEEEEecC------CCceecCCCceEEEEEeCCCEEEEEE----eCCeEEEEEEcCCCC
Q psy14552 77 KKIVRCAVNQRQIVIALQGGRLIYFEMHP------VSDKKESDKKKIVRCAVNQRQIVIAL----QGGRLIYFEMHPETG 146 (290)
Q Consensus 77 ~~Iv~as~n~~qv~ial~~g~i~~~~~~~------~~~~~~~~~~~Ii~as~~~~~l~Val----~~~~i~~l~l~~~~~ 146 (290)
.+|.++-.|...++++|.+...+ ..+.. ..+|.+ ....+.|-+.|...+.+|. ..+.|++|....
T Consensus 88 t~IL~VrmNr~RLvV~Lee~IyI-ydI~~MklLhTI~t~~~-n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n--- 162 (391)
T KOG2110|consen 88 TSILAVRMNRKRLVVCLEESIYI-YDIKDMKLLHTIETTPP-NPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN--- 162 (391)
T ss_pred CceEEEEEccceEEEEEcccEEE-EecccceeehhhhccCC-CccceEeeccCCCCceEEecCCCCCceEEEEEccc---
Confidence 46999999999999999888333 33321 123322 2222323366655444444 257888887654
Q ss_pred CceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEE-EEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCC
Q psy14552 147 ILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVR-LISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPT 225 (290)
Q Consensus 147 ~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~-i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~ 225 (290)
+......-.-..+++|++|.+. ..+|+-+...|+|. +|.++..+.+...+ =|+.|.+|.-+-|..+
T Consensus 163 -l~~v~~I~aH~~~lAalafs~~------G~llATASeKGTVIRVf~v~~G~kl~eFR---RG~~~~~IySL~Fs~d--- 229 (391)
T KOG2110|consen 163 -LQPVNTINAHKGPLAALAFSPD------GTLLATASEKGTVIRVFSVPEGQKLYEFR---RGTYPVSIYSLSFSPD--- 229 (391)
T ss_pred -ceeeeEEEecCCceeEEEECCC------CCEEEEeccCceEEEEEEcCCccEeeeee---CCceeeEEEEEEECCC---
Confidence 3232211234688999999753 47899999988655 57776444444332 3556777777766433
Q ss_pred CCCCCCCCccCCceEEEEEecCceEEEEEEeCC
Q psy14552 226 SSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQT 258 (290)
Q Consensus 226 ~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~~ 258 (290)
..||-+.-..+.+--|+++..
T Consensus 230 ------------s~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 230 ------------SQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred ------------CCeEEEecCCCeEEEEEeccc
Confidence 336888888888888988553
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=95.25 E-value=2.5 Score=42.20 Aligned_cols=109 Identities=17% Similarity=0.217 Sum_probs=63.4
Q ss_pred EeecCceEEEEee-CCeEEEEEecCCCceec--C---CC-ceEEEE--Ee-CCCEEEEEEeCCeEEEEEEcCCCCC---c
Q psy14552 82 CAVNQRQIVIALQ-GGRLIYFEMHPVSDKKE--S---DK-KKIVRC--AV-NQRQIVIALQGGRLIYFEMHPETGI---L 148 (290)
Q Consensus 82 as~n~~qv~ial~-~g~i~~~~~~~~~~~~~--~---~~-~~Ii~a--s~-~~~~l~Val~~~~i~~l~l~~~~~~---l 148 (290)
+++|+.++++... .|....+..+..+.... | .+ -.|.+. +. ++..++.|..|++|+++.++.. +. .
T Consensus 36 ~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~-~~~~~~ 114 (493)
T PTZ00421 36 IACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEE-GLTQNI 114 (493)
T ss_pred EeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCC-cccccc
Confidence 5667777777654 23344455444333221 0 11 123222 33 4456888888999999998752 11 0
Q ss_pred eeeeeeee-cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCC
Q psy14552 149 DECSETIQ-MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQ 196 (290)
Q Consensus 149 ~~~~~~~~-l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~ 196 (290)
.+.+..+. -...|.++++.+.. ..+|+.|.+|++|.+|.+...
T Consensus 115 ~~~l~~L~gH~~~V~~l~f~P~~-----~~iLaSgs~DgtVrIWDl~tg 158 (493)
T PTZ00421 115 SDPIVHLQGHTKKVGIVSFHPSA-----MNVLASAGADMVVNVWDVERG 158 (493)
T ss_pred CcceEEecCCCCcEEEEEeCcCC-----CCEEEEEeCCCEEEEEECCCC
Confidence 11111111 24578888887532 468999999999999998643
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.84 Score=46.74 Aligned_cols=152 Identities=11% Similarity=0.220 Sum_probs=94.6
Q ss_pred CceEEEEeec--CceEEEEeeCCeEEEEEecC--CCceecCCCce--E--EEEEeC-----CCEEEEEEeCCeEEEEEEc
Q psy14552 76 KKKIVRCAVN--QRQIVIALQGGRLIYFEMHP--VSDKKESDKKK--I--VRCAVN-----QRQIVIALQGGRLIYFEMH 142 (290)
Q Consensus 76 ~~~Iv~as~n--~~qv~ial~~g~i~~~~~~~--~~~~~~~~~~~--I--i~as~~-----~~~l~Val~~~~i~~l~l~ 142 (290)
..++.+||-+ ..|+++-+.+|+|-.-.-.. ...+..|.+.+ | ++|+.+ ...++|.-|+.++.+.+++
T Consensus 132 s~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls 211 (1081)
T KOG1538|consen 132 SSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS 211 (1081)
T ss_pred heeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec
Confidence 4456666654 55677788899886543211 12233333222 3 666322 1238999999999998886
Q ss_pred CCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCC
Q psy14552 143 PETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGAS 222 (290)
Q Consensus 143 ~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~ 222 (290)
- +. +-+...+..++.|++..+- ..|+++|..|+.+.+|.=+. +....++..-.-+=-+...
T Consensus 212 G---~~--Igk~r~L~FdP~CisYf~N------GEy~LiGGsdk~L~~fTR~G------vrLGTvg~~D~WIWtV~~~-- 272 (1081)
T KOG1538|consen 212 G---KQ--IGKDRALNFDPCCISYFTN------GEYILLGGSDKQLSLFTRDG------VRLGTVGEQDSWIWTVQAK-- 272 (1081)
T ss_pred c---ee--ecccccCCCCchhheeccC------CcEEEEccCCCceEEEeecC------eEEeeccccceeEEEEEEc--
Confidence 4 32 2245678999999998743 57999999999999887542 1112233332333333321
Q ss_pred CCCCCCCCCCCccCCceEEEEEecCceEEEEEEeCCC
Q psy14552 223 DPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTS 259 (290)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~~~ 259 (290)
.+..|.-+|-.||.+.-|.+-..+
T Consensus 273 -------------PNsQ~v~~GCqDGTiACyNl~fST 296 (1081)
T KOG1538|consen 273 -------------PNSQYVVVGCQDGTIACYNLIFST 296 (1081)
T ss_pred -------------cCCceEEEEEccCeeehhhhHHhH
Confidence 234568999999999998875443
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=95.11 E-value=1.8 Score=36.71 Aligned_cols=140 Identities=13% Similarity=0.170 Sum_probs=75.2
Q ss_pred CceEEEEeeCCeEEEEEecCCCceec-CCC-ceEEEEEe--CCCEEEEEEeCCeEEEEEEcCCCCCceeeeeee-ecCcc
Q psy14552 86 QRQIVIALQGGRLIYFEMHPVSDKKE-SDK-KKIVRCAV--NQRQIVIALQGGRLIYFEMHPETGILDECSETI-QMESE 160 (290)
Q Consensus 86 ~~qv~ial~~g~i~~~~~~~~~~~~~-~~~-~~Ii~as~--~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~-~l~~e 160 (290)
+.+++.+..+|.+..+.+........ ..+ ..+.+... ++..++.+..++.++++.+.. +.. .... ..+..
T Consensus 63 ~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~---~~~~~~~~~~ 137 (289)
T cd00200 63 GTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET--GKC---LTTLRGHTDW 137 (289)
T ss_pred CCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC--cEE---EEEeccCCCc
Confidence 34677777788888777654211111 111 12433332 323344444489999988764 211 1112 23456
Q ss_pred eeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceE
Q psy14552 161 VLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLY 240 (290)
Q Consensus 161 i~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (290)
+.++.+.+. ..++++|..||.+.+|.+.....+.... .-.....++... ....+
T Consensus 138 i~~~~~~~~------~~~l~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~------------------~~~~~ 191 (289)
T cd00200 138 VNSVAFSPD------GTFVASSSQDGTIKLWDLRTGKCVATLT--GHTGEVNSVAFS------------------PDGEK 191 (289)
T ss_pred EEEEEEcCc------CCEEEEEcCCCcEEEEEccccccceeEe--cCccccceEEEC------------------CCcCE
Confidence 888888642 4677777779999999986332222221 101122233222 12234
Q ss_pred EEEEecCceEEEEEEe
Q psy14552 241 LYVGLQNGALLRMVVD 256 (290)
Q Consensus 241 L~iGl~dG~l~~~~~d 256 (290)
+++|-.||.+.-|.+.
T Consensus 192 l~~~~~~~~i~i~d~~ 207 (289)
T cd00200 192 LLSSSSDGTIKLWDLS 207 (289)
T ss_pred EEEecCCCcEEEEECC
Confidence 7777778888877653
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=95.10 E-value=1.2 Score=35.63 Aligned_cols=93 Identities=17% Similarity=0.185 Sum_probs=60.8
Q ss_pred CEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeE
Q psy14552 125 RQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNL 204 (290)
Q Consensus 125 ~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~ 204 (290)
+.++||+.|..|++|.=++ +...++....|+++.-. .....+-|+.||+|-+|.-. .-+=.+|
T Consensus 16 ~eLlvGs~D~~IRvf~~~e-------~~~Ei~e~~~v~~L~~~-------~~~~F~Y~l~NGTVGvY~~~--~RlWRiK- 78 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGDE-------IVAEITETDKVTSLCSL-------GGGRFAYALANGTVGVYDRS--QRLWRIK- 78 (111)
T ss_pred ceEEEecCCcEEEEEeCCc-------EEEEEecccceEEEEEc-------CCCEEEEEecCCEEEEEeCc--ceeeeec-
Confidence 4599999999999997433 12233444555544322 23568889999999999631 1121121
Q ss_pred EecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceE
Q psy14552 205 QGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGAL 250 (290)
Q Consensus 205 ~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l 250 (290)
=...|.++....++. ++..-|.+|=.||.+
T Consensus 79 --SK~~~~~~~~~D~~g--------------dG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 79 --SKNQVTSMAFYDING--------------DGVPELIVGWSNGKV 108 (111)
T ss_pred --cCCCeEEEEEEcCCC--------------CCceEEEEEecCCeE
Confidence 123688998888743 466779999999975
|
|
| >KOG0647|consensus | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.93 Score=42.24 Aligned_cols=99 Identities=13% Similarity=0.179 Sum_probs=69.4
Q ss_pred EEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCC-CCceeEeeEE
Q psy14552 127 IVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAP-QDCLKQKNLQ 205 (290)
Q Consensus 127 l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~-~~~l~~~~~~ 205 (290)
++-|.||.+|.|...... ..+ .++.+|.-+=++++. .+.++||+.+..|.+|+|.. ...+... .-
T Consensus 130 l~TGSWDKTlKfWD~R~~----~pv-~t~~LPeRvYa~Dv~--------~pm~vVata~r~i~vynL~n~~te~k~~-~S 195 (347)
T KOG0647|consen 130 LVTGSWDKTLKFWDTRSS----NPV-ATLQLPERVYAADVL--------YPMAVVATAERHIAVYNLENPPTEFKRI-ES 195 (347)
T ss_pred eEecccccceeecccCCC----Cee-eeeeccceeeehhcc--------CceeEEEecCCcEEEEEcCCCcchhhhh-cC
Confidence 677789999999977652 132 467889988887663 67999999999999999942 2222222 12
Q ss_pred ecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeC
Q psy14552 206 GLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQ 257 (290)
Q Consensus 206 ~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~ 257 (290)
.|..+-|++++.+ ++..| .+|--+|.+.-..+|.
T Consensus 196 pLk~Q~R~va~f~-----------------d~~~~-alGsiEGrv~iq~id~ 229 (347)
T KOG0647|consen 196 PLKWQTRCVACFQ-----------------DKDGF-ALGSIEGRVAIQYIDD 229 (347)
T ss_pred cccceeeEEEEEe-----------------cCCce-EeeeecceEEEEecCC
Confidence 3666788888876 23333 6777778777777765
|
|
| >KOG0283|consensus | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.28 Score=50.49 Aligned_cols=102 Identities=20% Similarity=0.263 Sum_probs=73.7
Q ss_pred CEEEEEE-eCCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEee
Q psy14552 125 RQIVIAL-QGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKN 203 (290)
Q Consensus 125 ~~l~Val-~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~ 203 (290)
++++++. .|.++++..+.-+ ++++...-+.=|+|+.|.|.+ ..|.+-|+-||.+++|++.. -+++.
T Consensus 380 n~fLLSSSMDKTVRLWh~~~~-----~CL~~F~HndfVTcVaFnPvD-----DryFiSGSLD~KvRiWsI~d---~~Vv~ 446 (712)
T KOG0283|consen 380 NNFLLSSSMDKTVRLWHPGRK-----ECLKVFSHNDFVTCVAFNPVD-----DRYFISGSLDGKVRLWSISD---KKVVD 446 (712)
T ss_pred CCeeEeccccccEEeecCCCc-----ceeeEEecCCeeEEEEecccC-----CCcEeecccccceEEeecCc---CeeEe
Confidence 3444443 4888988877642 445556667779999999886 56999999999999999963 34444
Q ss_pred EEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeC
Q psy14552 204 LQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQ 257 (290)
Q Consensus 204 ~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~ 257 (290)
...+..+..+++... +| -+.+||+-+|.+.-|....
T Consensus 447 W~Dl~~lITAvcy~P-----------------dG-k~avIGt~~G~C~fY~t~~ 482 (712)
T KOG0283|consen 447 WNDLRDLITAVCYSP-----------------DG-KGAVIGTFNGYCRFYDTEG 482 (712)
T ss_pred ehhhhhhheeEEecc-----------------CC-ceEEEEEeccEEEEEEccC
Confidence 455556666666664 33 3589999999999987643
|
|
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.059 Score=53.55 Aligned_cols=54 Identities=26% Similarity=0.648 Sum_probs=34.1
Q ss_pred CCceEEEEEeCCCEEEEEEeCCeEEEEEEcCCCCCceeeee---eeecCcceeEEEeee
Q psy14552 113 DKKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSE---TIQMESEVLCMALSN 168 (290)
Q Consensus 113 ~~~~Ii~as~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~---~~~l~~ei~~l~i~~ 168 (290)
.+..|++|+.++.+++|++.++.+.+|+++.. .+..... ...++.||+|+++.|
T Consensus 447 ~~~~I~~a~~~~~~v~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 447 AGSIIVAASINDPQVLVALSGGELVYFELDDN--KISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp TS---SEEEESSSEEEEEE-TTEEEEEEEETT--EEEEEEE----EE-SS-EEEEE---
T ss_pred CCCeEEEEEECCCEEEEEEeCCcEEEEEEECC--ceeeeeeccccccCCCceEEEEeCC
Confidence 55678899999999999999999999999973 2221111 124899999999875
|
... |
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=94.96 E-value=5.7 Score=41.68 Aligned_cols=108 Identities=15% Similarity=0.266 Sum_probs=73.3
Q ss_pred EEEEeecCceEEEEeeCCeEEEEEecCCCceec-CC-CceEEEEEeC--CCEEEEEEeCCeEEEEEEcCCCCCceeeeee
Q psy14552 79 IVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKE-SD-KKKIVRCAVN--QRQIVIALQGGRLIYFEMHPETGILDECSET 154 (290)
Q Consensus 79 Iv~as~n~~qv~ial~~g~i~~~~~~~~~~~~~-~~-~~~Ii~as~~--~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~ 154 (290)
|..-+..=+-+++-.+.|++..+.+........ ++ ...|+++... -.-++||+.+|+|++|.+.-+ +++-+
T Consensus 165 l~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d-----kil~s 239 (910)
T KOG1539|consen 165 LLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFD-----KILMS 239 (910)
T ss_pred EecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccC-----cEEEE
Confidence 333445556678888889888887754322211 11 1224455322 334999999999999998752 33334
Q ss_pred eecC-cceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCC
Q psy14552 155 IQME-SEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQ 196 (290)
Q Consensus 155 ~~l~-~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~ 196 (290)
...+ ..|+.++|... +.+.+++|..+|.+.+|.|+..
T Consensus 240 Fk~d~g~VtslSFrtD-----G~p~las~~~~G~m~~wDLe~k 277 (910)
T KOG1539|consen 240 FKQDWGRVTSLSFRTD-----GNPLLASGRSNGDMAFWDLEKK 277 (910)
T ss_pred EEccccceeEEEeccC-----CCeeEEeccCCceEEEEEcCCC
Confidence 5555 88999999753 4889999999999999999864
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=94.71 E-value=3.8 Score=38.53 Aligned_cols=120 Identities=18% Similarity=0.223 Sum_probs=74.3
Q ss_pred eCCCEEEEEEe----CCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeC-CCeEEEEEeCCC
Q psy14552 122 VNQRQIVIALQ----GGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLA-DNTVRLISLAPQ 196 (290)
Q Consensus 122 ~~~~~l~Val~----~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~-dg~v~i~~l~~~ 196 (290)
.++..+.++.+ ++.|..+.+++++++|..+.........++-+++.+. ..+|+|+.+ +|++.+|.++++
T Consensus 46 ~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~------g~~l~vany~~g~v~v~~l~~~ 119 (345)
T PF10282_consen 46 PDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPD------GRFLYVANYGGGSVSVFPLDDD 119 (345)
T ss_dssp TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTT------SSEEEEEETTTTEEEEEEECTT
T ss_pred eCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecC------CCEEEEEEccCCeEEEEEccCC
Confidence 34444555444 4588888988744677665322236677777777532 578888885 999999999876
Q ss_pred CceeEeeEEe------------cCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeCCCCcccc
Q psy14552 197 DCLKQKNLQG------------LPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLSD 264 (290)
Q Consensus 197 ~~l~~~~~~~------------L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~~~~~l~~ 264 (290)
+.+....... -+.-|+.+.+.. +++..+..-++...+..|.++...+.|..
T Consensus 120 g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-----------------dg~~v~v~dlG~D~v~~~~~~~~~~~l~~ 182 (345)
T PF10282_consen 120 GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-----------------DGRFVYVPDLGADRVYVYDIDDDTGKLTP 182 (345)
T ss_dssp SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-----------------TSSEEEEEETTTTEEEEEEE-TTS-TEEE
T ss_pred cccceeeeecccCCCCCcccccccccceeEEECC-----------------CCCEEEEEecCCCEEEEEEEeCCCceEEE
Confidence 5454432111 012245554442 34554556899999999999987776643
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF14779 BBS1: Ciliary BBSome complex subunit 1 | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.43 Score=43.59 Aligned_cols=79 Identities=15% Similarity=0.281 Sum_probs=58.4
Q ss_pred cCcceeEEEeeeCC-CCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCcc
Q psy14552 157 MESEVLCMALSNAP-SGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVT 235 (290)
Q Consensus 157 l~~ei~~l~i~~~~-~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~ 235 (290)
-+..|+||+--..+ .+......|++|+.+|.++++. +. .+...++..++.+|..+...-. +
T Consensus 175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd--~~-af~il~~~~lpsvPv~i~~~G~---------------~ 236 (257)
T PF14779_consen 175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILD--PQ-AFTILKQVQLPSVPVFISVSGQ---------------Y 236 (257)
T ss_pred cCceeEEeeeecccccCCCCcceEEEEecCCeEEEEC--ch-hheeEEEEecCCCceEEEEEee---------------e
Confidence 56788998765443 1123568999999999888765 33 5777888889999997776632 3
Q ss_pred C-CceEEEEEecCceEEEE
Q psy14552 236 L-GNLYLYVGLQNGALLRM 253 (290)
Q Consensus 236 ~-~~~~L~iGl~dG~l~~~ 253 (290)
. ....++|..|||.++..
T Consensus 237 devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 237 DEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred eccceEEEEEeCCCEEEEE
Confidence 2 56779999999999865
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.69 Score=48.53 Aligned_cols=111 Identities=12% Similarity=0.116 Sum_probs=80.2
Q ss_pred CCceEEEEeecCceEEEEeeCCeEEEEEecCCC--ceecCCCceE-EEE-EeCCCEEEEEEeCCeEEEEEEcCCCCCcee
Q psy14552 75 DKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVS--DKKESDKKKI-VRC-AVNQRQIVIALQGGRLIYFEMHPETGILDE 150 (290)
Q Consensus 75 ~~~~Iv~as~n~~qv~ial~~g~i~~~~~~~~~--~~~~~~~~~I-i~a-s~~~~~l~Val~~~~i~~l~l~~~~~~l~~ 150 (290)
.|..|.+.+++.++++.+..++.+.-+.+.+.. .+..+--..| ..| +.++..++.|..|-.|.++++++. .+ +
T Consensus 55 ~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~-s~--~ 131 (933)
T KOG1274|consen 55 SGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS-SQ--E 131 (933)
T ss_pred cCceeEEEeecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEecccc-ch--h
Confidence 688999999999999999999999877765431 1211111112 222 556667888878888999998873 22 2
Q ss_pred eeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCC
Q psy14552 151 CSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAP 195 (290)
Q Consensus 151 ~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~ 195 (290)
. .-+....+++++++.+. ..+|++.+-||.|.+|.++.
T Consensus 132 ~-~lrgh~apVl~l~~~p~------~~fLAvss~dG~v~iw~~~~ 169 (933)
T KOG1274|consen 132 K-VLRGHDAPVLQLSYDPK------GNFLAVSSCDGKVQIWDLQD 169 (933)
T ss_pred e-eecccCCceeeeeEcCC------CCEEEEEecCceEEEEEccc
Confidence 1 22456789999999753 58999999999999999974
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=94.24 E-value=4.6 Score=42.43 Aligned_cols=149 Identities=14% Similarity=0.177 Sum_probs=82.9
Q ss_pred eEEEEeec--CceEEEEeeCCeEEEEEecCC----CceecC-----CCceE--EEEE-eCCCEEEEEEeCCeEEEEEEcC
Q psy14552 78 KIVRCAVN--QRQIVIALQGGRLIYFEMHPV----SDKKES-----DKKKI--VRCA-VNQRQIVIALQGGRLIYFEMHP 143 (290)
Q Consensus 78 ~Iv~as~n--~~qv~ial~~g~i~~~~~~~~----~~~~~~-----~~~~I--i~as-~~~~~l~Val~~~~i~~l~l~~ 143 (290)
.|.+++.+ +.+++.+-.+|.|..++.... ..+..+ .+..+ ++.+ ..+.+++.+..|++|+++.+..
T Consensus 485 ~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~ 564 (793)
T PLN00181 485 LVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR 564 (793)
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC
Confidence 34444443 566777777888877765321 011000 11112 1111 2345677777799999998764
Q ss_pred CCCCceeeeeee-ecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCC
Q psy14552 144 ETGILDECSETI-QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGAS 222 (290)
Q Consensus 144 ~~~~l~~~~~~~-~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~ 222 (290)
+.. .... .-...|.++++.+.+ ..+|+.|..||.+.+|.+.....+..+. ... .+..+.+..
T Consensus 565 --~~~---~~~~~~H~~~V~~l~~~p~~-----~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~---~~~---~v~~v~~~~- 627 (793)
T PLN00181 565 --SQL---VTEMKEHEKRVWSIDYSSAD-----PTLLASGSDDGSVKLWSINQGVSIGTIK---TKA---NICCVQFPS- 627 (793)
T ss_pred --CeE---EEEecCCCCCEEEEEEcCCC-----CCEEEEEcCCCEEEEEECCCCcEEEEEe---cCC---CeEEEEEeC-
Confidence 221 1112 234568888886432 4689999999999999986433333321 111 122222211
Q ss_pred CCCCCCCCCCCccCCceEEEEEecCceEEEEEEe
Q psy14552 223 DPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d 256 (290)
....+|..|..||.+.-|.+.
T Consensus 628 -------------~~g~~latgs~dg~I~iwD~~ 648 (793)
T PLN00181 628 -------------ESGRSLAFGSADHKVYYYDLR 648 (793)
T ss_pred -------------CCCCEEEEEeCCCeEEEEECC
Confidence 123458888888888877653
|
|
| >KOG0647|consensus | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.48 Score=44.09 Aligned_cols=98 Identities=21% Similarity=0.155 Sum_probs=64.0
Q ss_pred cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccC
Q psy14552 157 MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTL 236 (290)
Q Consensus 157 l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~ 236 (290)
-..+|++++|.+.. ..++++|.|||+|++|.+...+.+.....+.++.-+-.++-.+ +
T Consensus 26 P~DsIS~l~FSP~~-----~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd-----------------d 83 (347)
T KOG0647|consen 26 PEDSISALAFSPQA-----DNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD-----------------D 83 (347)
T ss_pred cccchheeEecccc-----CceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEcc-----------------C
Confidence 34678999998742 4677799999999999997544455544344443322332221 2
Q ss_pred CceEEEEEecCceEEEEEEeCCCCcccccceEEecCcceEEEEEEe
Q psy14552 237 GNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRC 282 (290)
Q Consensus 237 ~~~~L~iGl~dG~l~~~~~d~~~~~l~~~~~~~lG~~pv~l~~~~~ 282 (290)
+ ..+|.|=-||.+--+. ..++++. .+-.=..||+-+.+--
T Consensus 84 g-skVf~g~~Dk~~k~wD--L~S~Q~~---~v~~Hd~pvkt~~wv~ 123 (347)
T KOG0647|consen 84 G-SKVFSGGCDKQAKLWD--LASGQVS---QVAAHDAPVKTCHWVP 123 (347)
T ss_pred C-ceEEeeccCCceEEEE--ccCCCee---eeeecccceeEEEEec
Confidence 3 5589999999987664 4556543 4556677888766543
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=93.81 E-value=7.3 Score=38.28 Aligned_cols=107 Identities=13% Similarity=0.124 Sum_probs=67.4
Q ss_pred CCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEe
Q psy14552 123 NQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQK 202 (290)
Q Consensus 123 ~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~ 202 (290)
.++.++-|..|++|++..+.. +.....++ .-...|+++++.+. ..+++.|..||.+++|.+...... .+
T Consensus 257 ~g~~i~Sgs~D~tvriWd~~~--~~~~~~l~--~hs~~is~~~f~~d------~~~l~s~s~d~~i~vwd~~~~~~~-~~ 325 (456)
T KOG0266|consen 257 DGNLLVSGSDDGTVRIWDVRT--GECVRKLK--GHSDGISGLAFSPD------GNLLVSASYDGTIRVWDLETGSKL-CL 325 (456)
T ss_pred CCCEEEEecCCCcEEEEeccC--CeEEEeee--ccCCceEEEEECCC------CCEEEEcCCCccEEEEECCCCcee-ee
Confidence 344466666799999998875 33323221 13457888888643 578889988999999998643321 11
Q ss_pred eEEecC-CcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEe
Q psy14552 203 NLQGLP-DLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 203 ~~~~L~-~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d 256 (290)
+ ...+ ..|..+..+.+. .+..||+++..|+.+.-+.+.
T Consensus 326 ~-~~~~~~~~~~~~~~~fs---------------p~~~~ll~~~~d~~~~~w~l~ 364 (456)
T KOG0266|consen 326 K-LLSGAENSAPVTSVQFS---------------PNGKYLLSASLDRTLKLWDLR 364 (456)
T ss_pred e-cccCCCCCCceeEEEEC---------------CCCcEEEEecCCCeEEEEEcc
Confidence 1 1111 122134444442 345689999999999988774
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=93.77 E-value=4.4 Score=37.50 Aligned_cols=107 Identities=12% Similarity=0.180 Sum_probs=69.4
Q ss_pred EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCcee
Q psy14552 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLK 200 (290)
Q Consensus 121 s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~ 200 (290)
+.+++.|+-|-.|+++.+..+++. ..+ ..+.--..|-.+.|.| +...|+.+.. .+|.+|.++....++
T Consensus 201 SpDGslcasGgkdg~~~LwdL~~~-k~l----ysl~a~~~v~sl~fsp------nrywL~~at~-~sIkIwdl~~~~~v~ 268 (315)
T KOG0279|consen 201 SPDGSLCASGGKDGEAMLWDLNEG-KNL----YSLEAFDIVNSLCFSP------NRYWLCAATA-TSIKIWDLESKAVVE 268 (315)
T ss_pred CCCCCEEecCCCCceEEEEEccCC-cee----EeccCCCeEeeEEecC------CceeEeeccC-CceEEEeccchhhhh
Confidence 455666776666888888888862 222 2223234455666653 2455555554 458999998766666
Q ss_pred EeeEEecCC-----cceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEE
Q psy14552 201 QKNLQGLPD-----LAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 201 ~~~~~~L~~-----~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
.++....+. .|+++.+.-. .....||.|.-||.+--+.+
T Consensus 269 ~l~~d~~g~s~~~~~~~clslaws----------------~dG~tLf~g~td~~irv~qv 312 (315)
T KOG0279|consen 269 ELKLDGIGPSSKAGDPICLSLAWS----------------ADGQTLFAGYTDNVIRVWQV 312 (315)
T ss_pred hccccccccccccCCcEEEEEEEc----------------CCCcEEEeeecCCcEEEEEe
Confidence 665444443 6888888864 23345999999999887765
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=93.74 E-value=6 Score=36.98 Aligned_cols=139 Identities=12% Similarity=0.214 Sum_probs=87.1
Q ss_pred EEeecCceEEEEeeCCeEEEEEecCCCceec--CCCceEEEE-EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeec
Q psy14552 81 RCAVNQRQIVIALQGGRLIYFEMHPVSDKKE--SDKKKIVRC-AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQM 157 (290)
Q Consensus 81 ~as~n~~qv~ial~~g~i~~~~~~~~~~~~~--~~~~~Ii~a-s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l 157 (290)
.-+-+...++++.=+|++..+..... ++.. ..+.-+..| -.+..++++|..|+.|+.+.+... .. ..+. +-
T Consensus 20 ~f~~~~~~LLvssWDgslrlYdv~~~-~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~-~~--~~ig--th 93 (323)
T KOG1036|consen 20 KFSPSSSDLLVSSWDGSLRLYDVPAN-SLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTG-NE--DQIG--TH 93 (323)
T ss_pred EEcCcCCcEEEEeccCcEEEEeccch-hhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCC-cc--eeec--cC
Confidence 33334678888989999998887543 2222 233335555 466778999988999999887752 11 1111 22
Q ss_pred CcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecC--CcceEEEEEEecCCCCCCCCCCCCCcc
Q psy14552 158 ESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLP--DLAESLVMIEMGASDPTSSDEPAGPVT 235 (290)
Q Consensus 158 ~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~--~~p~Sl~~~~~~~~~~~~~~~~~~~~~ 235 (290)
..-+.|+.... ....++.|.||+++..|..-. +...+ ..+..+-...
T Consensus 94 ~~~i~ci~~~~------~~~~vIsgsWD~~ik~wD~R~--------~~~~~~~d~~kkVy~~~----------------- 142 (323)
T KOG1036|consen 94 DEGIRCIEYSY------EVGCVISGSWDKTIKFWDPRN--------KVVVGTFDQGKKVYCMD----------------- 142 (323)
T ss_pred CCceEEEEeec------cCCeEEEcccCccEEEEeccc--------cccccccccCceEEEEe-----------------
Confidence 44577776652 256788999999999987431 01111 1233332222
Q ss_pred CCceEEEEEecCceEEEEEEe
Q psy14552 236 LGNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 236 ~~~~~L~iGl~dG~l~~~~~d 256 (290)
.....|.||+.|-.++-|.+-
T Consensus 143 v~g~~LvVg~~~r~v~iyDLR 163 (323)
T KOG1036|consen 143 VSGNRLVVGTSDRKVLIYDLR 163 (323)
T ss_pred ccCCEEEEeecCceEEEEEcc
Confidence 233359999999999999873
|
|
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=93.69 E-value=8.3 Score=38.49 Aligned_cols=101 Identities=13% Similarity=0.154 Sum_probs=61.4
Q ss_pred cCceEEEEeeCCeEEEEEecCCCceecCCCceEEEEE--eCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCccee
Q psy14552 85 NQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRCA--VNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVL 162 (290)
Q Consensus 85 n~~qv~ial~~g~i~~~~~~~~~~~~~~~~~~Ii~as--~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~ 162 (290)
.++|++-+-.++++-.-. +..-+|...-.-...+++ ..+ .+++|...+...++.... ..+.. .+.. ...++
T Consensus 379 s~~q~~T~gqdk~v~lW~-~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~--~~lv~--~~~d-~~~ls 451 (626)
T KOG2106|consen 379 SKNQLLTCGQDKHVRLWN-DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTET--QDLVT--IHTD-NEQLS 451 (626)
T ss_pred ChhheeeccCcceEEEcc-CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEeccc--ceeEE--EEec-CCceE
Confidence 356666666666655433 222345431111112332 334 688888777777766554 11212 2334 77899
Q ss_pred EEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCc
Q psy14552 163 CMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDC 198 (290)
Q Consensus 163 ~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~ 198 (290)
|+++.+. -.+++||..|+.+++|.++.++.
T Consensus 452 ~v~ysp~------G~~lAvgs~d~~iyiy~Vs~~g~ 481 (626)
T KOG2106|consen 452 VVRYSPD------GAFLAVGSHDNHIYIYRVSANGR 481 (626)
T ss_pred EEEEcCC------CCEEEEecCCCeEEEEEECCCCc
Confidence 9999764 47999999999999999987653
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=93.59 E-value=7.3 Score=38.38 Aligned_cols=63 Identities=14% Similarity=0.314 Sum_probs=43.5
Q ss_pred EEE-E--eCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEE
Q psy14552 118 VRC-A--VNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLI 191 (290)
Q Consensus 118 i~a-s--~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~ 191 (290)
++| . .++.+++=|.-|+.+.+|.+.. . .+.-.+.+|..|..+++.+. ...+++|+.||.+.+-
T Consensus 241 VTcL~l~s~~~rLlS~sLD~~VKVfd~t~----~-Kvv~s~~~~~pvLsiavs~d------d~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 241 VTCLRLASDSTRLLSGSLDRHVKVFDTTN----Y-KVVHSWKYPGPVLSIAVSPD------DQTVVIGMSNGLVSIR 306 (487)
T ss_pred EEEEEeecCCceEeecccccceEEEEccc----e-EEEEeeecccceeeEEecCC------CceEEEecccceeeee
Confidence 555 3 3334444444489999998654 2 22346678999999888753 5789999999987764
|
|
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=93.43 E-value=1.3 Score=46.12 Aligned_cols=123 Identities=23% Similarity=0.256 Sum_probs=77.9
Q ss_pred EEEEEEeCCeEEEEEEcCCCCC-ceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeE
Q psy14552 126 QIVIALQGGRLIYFEMHPETGI-LDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNL 204 (290)
Q Consensus 126 ~l~Val~~~~i~~l~l~~~~~~-l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~ 204 (290)
.++||..+|.+.++.+.. +. +.+. ...+..|+++.=.| --..++||+.||.|+++++.-++.|...+
T Consensus 174 KIvvGs~~G~lql~Nvrt--~K~v~~f---~~~~s~IT~ieqsP------aLDVVaiG~~~G~ViifNlK~dkil~sFk- 241 (910)
T KOG1539|consen 174 KIVVGSSQGRLQLWNVRT--GKVVYTF---QEFFSRITAIEQSP------ALDVVAIGLENGTVIIFNLKFDKILMSFK- 241 (910)
T ss_pred eEEEeecCCcEEEEEecc--CcEEEEe---cccccceeEeccCC------cceEEEEeccCceEEEEEcccCcEEEEEE-
Confidence 478887888888887765 22 1111 12456777764332 35799999999999999997665555553
Q ss_pred EecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeCCCCc--ccc------cceEEecCcceE
Q psy14552 205 QGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGD--LSD------NRMRYLGSRPVK 276 (290)
Q Consensus 205 ~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~~~~~--l~~------~~~~~lG~~pv~ 276 (290)
+. -....++..- .+|.+.|-.|-.+|.+.-|.++...-. +.+ ....+|-.+||.
T Consensus 242 ~d-~g~VtslSFr-----------------tDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl 303 (910)
T KOG1539|consen 242 QD-WGRVTSLSFR-----------------TDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVL 303 (910)
T ss_pred cc-ccceeEEEec-----------------cCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceE
Confidence 22 1222333322 367888999999999999988654321 110 224566667776
Q ss_pred EE
Q psy14552 277 LF 278 (290)
Q Consensus 277 l~ 278 (290)
+.
T Consensus 304 ~t 305 (910)
T KOG1539|consen 304 VT 305 (910)
T ss_pred ee
Confidence 64
|
|
| >KOG0299|consensus | Back alignment and domain information |
|---|
Probab=93.36 E-value=8.7 Score=37.71 Aligned_cols=119 Identities=13% Similarity=0.133 Sum_probs=67.0
Q ss_pred eCCeEEEEEecCCCceec-CCCceEEEE-EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeee--------eecCcceeE
Q psy14552 94 QGGRLIYFEMHPVSDKKE-SDKKKIVRC-AVNQRQIVIALQGGRLIYFEMHPETGILDECSET--------IQMESEVLC 163 (290)
Q Consensus 94 ~~g~i~~~~~~~~~~~~~-~~~~~Ii~a-s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~--------~~l~~ei~~ 163 (290)
.++++.++.+.+..++.- +..-.+-+| -.|...++.|..+|.|.+.++-....-+.....+ ..-|+=|+.
T Consensus 306 rDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Wits 385 (479)
T KOG0299|consen 306 RDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITS 385 (479)
T ss_pred ccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceee
Confidence 456666666654444333 222245444 4677778888888888887765421111111111 111123444
Q ss_pred EEeeeCCCCCccccEEEEEeCCCeEEEEEeCCC-CceeEeeEEecCCcceEEEEEE
Q psy14552 164 MALSNAPSGEQMSRFLAVGLADNTVRLISLAPQ-DCLKQKNLQGLPDLAESLVMIE 218 (290)
Q Consensus 164 l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~-~~l~~~~~~~L~~~p~Sl~~~~ 218 (290)
++..+ ++..++-|.|||.|.+|.+.+. ..+..+-..++.....+|.+..
T Consensus 386 la~i~------~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~ 435 (479)
T KOG0299|consen 386 LAVIP------GSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSN 435 (479)
T ss_pred eEecc------cCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEcc
Confidence 44432 5789999999999999999754 2344443333445556776553
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=93.35 E-value=11 Score=38.75 Aligned_cols=68 Identities=18% Similarity=0.308 Sum_probs=48.4
Q ss_pred CCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcc---eeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCce
Q psy14552 123 NQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESE---VLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCL 199 (290)
Q Consensus 123 ~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~e---i~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l 199 (290)
.+.+++|||.|+.+.+|++.++ .+ +. ...++++ +.++++.+. ...++.|+.||.|++|.....+.+
T Consensus 121 ~~~~l~IgcddGvl~~~s~~p~--~I-~~--~r~l~rq~sRvLslsw~~~------~~~i~~Gs~Dg~Iriwd~~~~~t~ 189 (691)
T KOG2048|consen 121 ENTILAIGCDDGVLYDFSIGPD--KI-TY--KRSLMRQKSRVLSLSWNPT------GTKIAGGSIDGVIRIWDVKSGQTL 189 (691)
T ss_pred ccceEEeecCCceEEEEecCCc--eE-EE--EeecccccceEEEEEecCC------ccEEEecccCceEEEEEcCCCceE
Confidence 3566999999998888888772 22 21 3445555 778887532 456999999999999998755555
Q ss_pred eE
Q psy14552 200 KQ 201 (290)
Q Consensus 200 ~~ 201 (290)
..
T Consensus 190 ~~ 191 (691)
T KOG2048|consen 190 HI 191 (691)
T ss_pred EE
Confidence 53
|
|
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=93.33 E-value=6.2 Score=35.90 Aligned_cols=192 Identities=14% Similarity=0.161 Sum_probs=101.1
Q ss_pred EEEeecCCccCCCCeEEEEeeCCCeEEEEecCCeEEEeecCcceeeeccCCCCCceEEEEeecCceEEEEeeCCeEEEEE
Q psy14552 23 VEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIGAKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFE 102 (290)
Q Consensus 23 ~~e~~~~gf~~~~~Ti~~~~~~~~~ivQVt~~~v~l~~~~~~~~~~~~~~~~~~~~Iv~as~n~~qv~ial~~g~i~~~~ 102 (290)
..+++.-.|+.+..-++.|.+. .++|+-|.....+.=.++--.....|.+..+++..++---.+|++--+.
T Consensus 101 ~aqVNtV~fNeesSVv~SgsfD---------~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtyd 171 (307)
T KOG0316|consen 101 LAQVNTVRFNEESSVVASGSFD---------SSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYD 171 (307)
T ss_pred cceeeEEEecCcceEEEecccc---------ceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEE
Confidence 3444444565555555555552 3455555433222211111134556777777888887777788777666
Q ss_pred ecCCCceecC-CCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCC-ceeeeeeeecCcceeEEEeeeCCCCCccccE
Q psy14552 103 MHPVSDKKES-DKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGI-LDECSETIQMESEVLCMALSNAPSGEQMSRF 178 (290)
Q Consensus 103 ~~~~~~~~~~-~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~-l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~ 178 (290)
|... .+... -+.-|.+. +.+++..++++-|++++++.-+ +|+ |.+...+..++.-+=|. +. ++...
T Consensus 172 iR~G-~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~--tGklL~sYkGhkn~eykldc~-l~------qsdth 241 (307)
T KOG0316|consen 172 IRKG-TLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKE--TGKLLKSYKGHKNMEYKLDCC-LN------QSDTH 241 (307)
T ss_pred eecc-eeehhhcCCcceeEEecCCCCEEEEeeccceeeecccc--hhHHHHHhcccccceeeeeee-ec------cccee
Confidence 6432 22111 11113222 4445556667679999987433 343 22332233344444332 11 14567
Q ss_pred EEEEeCCCeEEEEEeCCCCceeEeeEEecCCcc--eEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEE
Q psy14552 179 LAVGLADNTVRLISLAPQDCLKQKNLQGLPDLA--ESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMV 254 (290)
Q Consensus 179 l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p--~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~ 254 (290)
++-|..||.++.|.|-.. +.+.+...+..| .+|... ....-++++++-|.+.-+.
T Consensus 242 V~sgSEDG~Vy~wdLvd~---~~~sk~~~~~~v~v~dl~~h------------------p~~~~f~~A~~~~~~~~~~ 298 (307)
T KOG0316|consen 242 VFSGSEDGKVYFWDLVDE---TQISKLSVVSTVIVTDLSCH------------------PTMDDFITATGHGDLFWYQ 298 (307)
T ss_pred EEeccCCceEEEEEeccc---eeeeeeccCCceeEEeeecc------------------cCccceeEecCCceeceee
Confidence 888889999999998532 233333333333 233222 1233478888888877664
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=93.15 E-value=3.3 Score=33.05 Aligned_cols=92 Identities=17% Similarity=0.087 Sum_probs=61.1
Q ss_pred eeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceE
Q psy14552 161 VLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLY 240 (290)
Q Consensus 161 i~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (290)
+++|++.+.+. .+...|+||+.|..|++|+=+ +.+..+ .....+.+|+-.. + ..
T Consensus 2 V~al~~~d~d~--dg~~eLlvGs~D~~IRvf~~~--e~~~Ei---~e~~~v~~L~~~~------------------~-~~ 55 (111)
T PF14783_consen 2 VTALCLFDFDG--DGENELLVGSDDFEIRVFKGD--EIVAEI---TETDKVTSLCSLG------------------G-GR 55 (111)
T ss_pred eeEEEEEecCC--CCcceEEEecCCcEEEEEeCC--cEEEEE---ecccceEEEEEcC------------------C-CE
Confidence 56677776542 257899999999999999832 233333 3334566665542 1 33
Q ss_pred EEEEecCceEEEEEEeCCCCcccccceEEecCcceEEEEEEeCC
Q psy14552 241 LYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQG 284 (290)
Q Consensus 241 L~iGl~dG~l~~~~~d~~~~~l~~~~~~~lG~~pv~l~~~~~~~ 284 (290)
..-||.||.+--|.-.. ..|+.+=-.+|+.+..+..+|
T Consensus 56 F~Y~l~NGTVGvY~~~~------RlWRiKSK~~~~~~~~~D~~g 93 (111)
T PF14783_consen 56 FAYALANGTVGVYDRSQ------RLWRIKSKNQVTSMAFYDING 93 (111)
T ss_pred EEEEecCCEEEEEeCcc------eeeeeccCCCeEEEEEEcCCC
Confidence 67799999999885322 235555667788888887765
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=92.70 E-value=8.7 Score=35.93 Aligned_cols=153 Identities=16% Similarity=0.269 Sum_probs=96.7
Q ss_pred CCceEEEEeec-CceEEEEeeCCeEEEEEecCCCceecCCCceEEEE-E--eCCCEEEEEEeCCeEEEEEEcCCCCCcee
Q psy14552 75 DKKKIVRCAVN-QRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRC-A--VNQRQIVIALQGGRLIYFEMHPETGILDE 150 (290)
Q Consensus 75 ~~~~Iv~as~n-~~qv~ial~~g~i~~~~~~~~~~~~~~~~~~Ii~a-s--~~~~~l~Val~~~~i~~l~l~~~~~~l~~ 150 (290)
-+.+|..|+.. +.+++....+|+|-.+.++...+...-.+.+.+.| . .....++-|.||.+|.+...... .
T Consensus 53 ~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~-----~ 127 (323)
T KOG1036|consen 53 HGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK-----V 127 (323)
T ss_pred cCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccc-----c
Confidence 34556666655 67888888999998888776554444444455666 3 23455666779999998765421 1
Q ss_pred eeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCC
Q psy14552 151 CSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEP 230 (290)
Q Consensus 151 ~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~ 230 (290)
.......+..|=|++.. ...|+||+.|..+.+|.|.......+.....|.-+-|++++.. +.
T Consensus 128 ~~~~~d~~kkVy~~~v~--------g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~p-n~--------- 189 (323)
T KOG1036|consen 128 VVGTFDQGKKVYCMDVS--------GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVP-NG--------- 189 (323)
T ss_pred cccccccCceEEEEecc--------CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEec-CC---------
Confidence 11123445677777763 5789999999999999986432222333334555668888875 11
Q ss_pred CCCccCCceEEEEEecCceEEEEEEeCC
Q psy14552 231 AGPVTLGNLYLYVGLQNGALLRMVVDQT 258 (290)
Q Consensus 231 ~~~~~~~~~~L~iGl~dG~l~~~~~d~~ 258 (290)
++ -++|.-||-+..=-+|+.
T Consensus 190 -----eG---y~~sSieGRVavE~~d~s 209 (323)
T KOG1036|consen 190 -----EG---YVVSSIEGRVAVEYFDDS 209 (323)
T ss_pred -----Cc---eEEEeecceEEEEccCCc
Confidence 11 467888887764334543
|
|
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=92.63 E-value=8.4 Score=35.60 Aligned_cols=155 Identities=18% Similarity=0.156 Sum_probs=85.4
Q ss_pred CCceEEEEeecCceEEEEeeCCeEEEEEecCC-CceecCCCceEEEE-EeCCCEEEEEEeCCeEEEEEEcCCCCCceeee
Q psy14552 75 DKKKIVRCAVNQRQIVIALQGGRLIYFEMHPV-SDKKESDKKKIVRC-AVNQRQIVIALQGGRLIYFEMHPETGILDECS 152 (290)
Q Consensus 75 ~~~~Iv~as~n~~qv~ial~~g~i~~~~~~~~-~~~~~~~~~~Ii~a-s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~ 152 (290)
+..+.|.+--..++++++--.|.+........ --|+..-+.+|-.. -.-++++++|+.++.++++.... |+. +
T Consensus 12 DaspLVV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~t--Gs~--~- 86 (354)
T KOG4649|consen 12 DASPLVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKT--GSQ--I- 86 (354)
T ss_pred cCCcEEEecCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecc--hhh--e-
Confidence 34445555555566666655555554433222 25777555556332 23467899999999999887764 532 2
Q ss_pred eeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCC
Q psy14552 153 ETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAG 232 (290)
Q Consensus 153 ~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~ 232 (290)
.......+|-+-+-.+.+ ...+.+|..|+..+ .||+...-...+.+.=|++-.|=++.
T Consensus 87 w~f~~~~~vk~~a~~d~~-----~glIycgshd~~~y--alD~~~~~cVykskcgG~~f~sP~i~--------------- 144 (354)
T KOG4649|consen 87 WNFVILETVKVRAQCDFD-----GGLIYCGSHDGNFY--ALDPKTYGCVYKSKCGGGTFVSPVIA--------------- 144 (354)
T ss_pred eeeeehhhhccceEEcCC-----CceEEEecCCCcEE--EecccccceEEecccCCceeccceec---------------
Confidence 223334445443333332 56889999999765 45543222223222222221111111
Q ss_pred CccCCceEEEEEecCceEEEEEEeCCC
Q psy14552 233 PVTLGNLYLYVGLQNGALLRMVVDQTS 259 (290)
Q Consensus 233 ~~~~~~~~L~iGl~dG~l~~~~~d~~~ 259 (290)
.+...||++.-.|.+++...++.+
T Consensus 145 ---~g~~sly~a~t~G~vlavt~~~~~ 168 (354)
T KOG4649|consen 145 ---PGDGSLYAAITAGAVLAVTKNPYS 168 (354)
T ss_pred ---CCCceEEEEeccceEEEEccCCCC
Confidence 234458888899999888775543
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=92.53 E-value=16 Score=38.49 Aligned_cols=100 Identities=17% Similarity=0.282 Sum_probs=62.8
Q ss_pred CceEEEEeeCCeEEEEEecCCCceec-C-CCceEEEEEe---CCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcc
Q psy14552 86 QRQIVIALQGGRLIYFEMHPVSDKKE-S-DKKKIVRCAV---NQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESE 160 (290)
Q Consensus 86 ~~qv~ial~~g~i~~~~~~~~~~~~~-~-~~~~Ii~as~---~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~e 160 (290)
..+++.+-.+|.|..+.+........ . ....|.+++. ++..++.|..|++|+++.+.. +.. .........
T Consensus 545 ~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~--~~~---~~~~~~~~~ 619 (793)
T PLN00181 545 KSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ--GVS---IGTIKTKAN 619 (793)
T ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC--CcE---EEEEecCCC
Confidence 45777777788888776643221111 1 1222433332 345677777799999998875 221 123334457
Q ss_pred eeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCC
Q psy14552 161 VLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAP 195 (290)
Q Consensus 161 i~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~ 195 (290)
+.|+.+.+. ...++++|..||.+.+|.+..
T Consensus 620 v~~v~~~~~-----~g~~latgs~dg~I~iwD~~~ 649 (793)
T PLN00181 620 ICCVQFPSE-----SGRSLAFGSADHKVYYYDLRN 649 (793)
T ss_pred eEEEEEeCC-----CCCEEEEEeCCCeEEEEECCC
Confidence 888887532 257899999999999999853
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=92.46 E-value=12 Score=36.85 Aligned_cols=110 Identities=15% Similarity=0.164 Sum_probs=66.3
Q ss_pred EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCcee
Q psy14552 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLK 200 (290)
Q Consensus 121 s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~ 200 (290)
+.++..++=+..|.+|+++.+... +.....+ ...+.-+.+++|.+. ...++.|.+|+++++|.+....+..
T Consensus 212 s~d~~~l~s~s~D~tiriwd~~~~-~~~~~~l--~gH~~~v~~~~f~p~------g~~i~Sgs~D~tvriWd~~~~~~~~ 282 (456)
T KOG0266|consen 212 SPDGSYLLSGSDDKTLRIWDLKDD-GRNLKTL--KGHSTYVTSVAFSPD------GNLLVSGSDDGTVRIWDVRTGECVR 282 (456)
T ss_pred CCCCcEEEEecCCceEEEeeccCC-CeEEEEe--cCCCCceEEEEecCC------CCEEEEecCCCcEEEEeccCCeEEE
Confidence 344555555556999999998431 2221211 135667888888754 3789999999999999987422222
Q ss_pred EeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeCCCCc
Q psy14552 201 QKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGD 261 (290)
Q Consensus 201 ~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~~~~~ 261 (290)
.+ ..-..+.+-+... ....+|..|=.||.+.-|.+ .++.
T Consensus 283 ~l---~~hs~~is~~~f~-----------------~d~~~l~s~s~d~~i~vwd~--~~~~ 321 (456)
T KOG0266|consen 283 KL---KGHSDGISGLAFS-----------------PDGNLLVSASYDGTIRVWDL--ETGS 321 (456)
T ss_pred ee---eccCCceEEEEEC-----------------CCCCEEEEcCCCccEEEEEC--CCCc
Confidence 22 1112233333332 22345888877998887754 4444
|
|
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=92.34 E-value=7.1 Score=38.32 Aligned_cols=161 Identities=13% Similarity=0.183 Sum_probs=91.9
Q ss_pred CCCceEEEEeecCceEEEEe-eCCeEEEEEecCCCceec--CCCceEEEE---EeCCCEEEEEEeCCeEEEEEEcC----
Q psy14552 74 SDKKKIVRCAVNQRQIVIAL-QGGRLIYFEMHPVSDKKE--SDKKKIVRC---AVNQRQIVIALQGGRLIYFEMHP---- 143 (290)
Q Consensus 74 ~~~~~Iv~as~n~~qv~ial-~~g~i~~~~~~~~~~~~~--~~~~~Ii~a---s~~~~~l~Val~~~~i~~l~l~~---- 143 (290)
-+|.-...++.|.++.++|- -.|.|+.-|+.. +.+.- ..+-+=++| +.+++.+.-|..|+.|++..+-.
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelss-G~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a 158 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSS-GILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSA 158 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEecc-ccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccc
Confidence 35666777888888888886 778888777763 22211 122222555 45566677776788887655432
Q ss_pred CCCCceeeeeeee-cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCC
Q psy14552 144 ETGILDECSETIQ-MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGAS 222 (290)
Q Consensus 144 ~~~~l~~~~~~~~-l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~ 222 (290)
+...-...+..+. -.-+|+-+.+.... -..+|+-...|.++.+|++....-|..+ . .|.++..+-+.
T Consensus 159 ~~~~~~~p~~~f~~HtlsITDl~ig~Gg----~~~rl~TaS~D~t~k~wdlS~g~LLlti---~---fp~si~av~lD-- 226 (476)
T KOG0646|consen 159 DNDHSVKPLHIFSDHTLSITDLQIGSGG----TNARLYTASEDRTIKLWDLSLGVLLLTI---T---FPSSIKAVALD-- 226 (476)
T ss_pred ccCCCccceeeeccCcceeEEEEecCCC----ccceEEEecCCceEEEEEeccceeeEEE---e---cCCcceeEEEc--
Confidence 1111001110111 12234444443221 3567888888999999998633222222 2 45555555542
Q ss_pred CCCCCCCCCCCccCCceEEEEEecCceEEEEEEeCCCC
Q psy14552 223 DPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSG 260 (290)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~~~~ 260 (290)
......|||..+|.+.-+.+...++
T Consensus 227 -------------pae~~~yiGt~~G~I~~~~~~~~~~ 251 (476)
T KOG0646|consen 227 -------------PAERVVYIGTEEGKIFQNLLFKLSG 251 (476)
T ss_pred -------------ccccEEEecCCcceEEeeehhcCCc
Confidence 2345699999999999887755443
|
|
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=91.92 E-value=8 Score=40.81 Aligned_cols=115 Identities=17% Similarity=0.297 Sum_probs=64.5
Q ss_pred eEEEEEeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcc-eeEEEeeeCCCCCccccEEEEEeCCC----eEEE
Q psy14552 116 KIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESE-VLCMALSNAPSGEQMSRFLAVGLADN----TVRL 190 (290)
Q Consensus 116 ~Ii~as~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~e-i~~l~i~~~~~~~~~~~~l~VGl~dg----~v~i 190 (290)
.+.+|+.++..+++|..+|.|.++. . ++.....-...+.+ +..+-+.. +....+.||-.++ .+.+
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln--~---s~~~~~~fqa~~~siv~~L~~~~-----~~~~L~sv~Ed~~~np~llki 96 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILN--S---SFQLIRGFQAYEQSIVQFLYILN-----KQNFLFSVGEDEQGNPVLLKI 96 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEec--c---cceeeehheecchhhhhHhhccc-----CceEEEEEeecCCCCceEEEE
Confidence 4566688888899998888887752 2 12121111123444 44443321 1234455666544 6888
Q ss_pred EEeCCC---C---ceeEeeEEec--C--CcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeC
Q psy14552 191 ISLAPQ---D---CLKQKNLQGL--P--DLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQ 257 (290)
Q Consensus 191 ~~l~~~---~---~l~~~~~~~L--~--~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~ 257 (290)
|++++. . ++-......+ | .-|.|.+.+. +.-..+.||..||.++.++=|.
T Consensus 97 w~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs-----------------~~l~~Iv~Gf~nG~V~~~~GDi 156 (933)
T KOG2114|consen 97 WDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVS-----------------EDLKTIVCGFTNGLVICYKGDI 156 (933)
T ss_pred ecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEE-----------------ccccEEEEEecCcEEEEEcCcc
Confidence 988653 1 1211222221 2 3566666664 2345699999999999987443
|
|
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=91.64 E-value=16 Score=36.59 Aligned_cols=175 Identities=15% Similarity=0.152 Sum_probs=104.2
Q ss_pred CCCCceEEEEeecCceEEEEeeCCeEEEEEecCCCceec-CCCceE--EEEEeCCCEEEEEEeCCeEEEEEEcCCCCCce
Q psy14552 73 ESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKE-SDKKKI--VRCAVNQRQIVIALQGGRLIYFEMHPETGILD 149 (290)
Q Consensus 73 ~~~~~~Iv~as~n~~qv~ial~~g~i~~~~~~~~~~~~~-~~~~~I--i~as~~~~~l~Val~~~~i~~l~l~~~~~~l~ 149 (290)
|++.-+|-...-+.+-++|-.+...|+.-.++....... -.+.++ .+..+...|++-+..|..+++.. + ..+
T Consensus 326 Pe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~---~k~- 400 (626)
T KOG2106|consen 326 PEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D---HKL- 400 (626)
T ss_pred chhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-C---Cce-
Confidence 345556666677777788888888777555443322221 122233 33355566666665688888776 2 122
Q ss_pred eeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCC
Q psy14552 150 ECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDE 229 (290)
Q Consensus 150 ~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~ 229 (290)
+ -.+.+..+.-|+.+.+. ..+++|+..|-.+++...... +-.++.. +.|.|.+-..
T Consensus 401 ~--wt~~~~d~~~~~~fhps-------g~va~Gt~~G~w~V~d~e~~~-lv~~~~d---~~~ls~v~ys----------- 456 (626)
T KOG2106|consen 401 E--WTKIIEDPAECADFHPS-------GVVAVGTATGRWFVLDTETQD-LVTIHTD---NEQLSVVRYS----------- 456 (626)
T ss_pred e--EEEEecCceeEeeccCc-------ceEEEeeccceEEEEecccce-eEEEEec---CCceEEEEEc-----------
Confidence 2 24456777888888753 389999999988877765322 3333222 4555554432
Q ss_pred CCCCccCCceEEEEEecCceEEEEEEeCCCCcccccceEEecCcceEEEEEEeCC
Q psy14552 230 PAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQG 284 (290)
Q Consensus 230 ~~~~~~~~~~~L~iGl~dG~l~~~~~d~~~~~l~~~~~~~lG~~pv~l~~~~~~~ 284 (290)
....+|-+|..|++++-|.++. +|....+-.+-=| .|+.---...++
T Consensus 457 ------p~G~~lAvgs~d~~iyiy~Vs~-~g~~y~r~~k~~g-s~ithLDwS~Ds 503 (626)
T KOG2106|consen 457 ------PDGAFLAVGSHDNHIYIYRVSA-NGRKYSRVGKCSG-SPITHLDWSSDS 503 (626)
T ss_pred ------CCCCEEEEecCCCeEEEEEECC-CCcEEEEeeeecC-ceeEEeeecCCC
Confidence 2235699999999999999987 4443332223334 676554444333
|
|
| >KOG0277|consensus | Back alignment and domain information |
|---|
Probab=91.61 E-value=1.9 Score=39.41 Aligned_cols=94 Identities=18% Similarity=0.260 Sum_probs=54.9
Q ss_pred eeCCeEEEEEecCCCceecC-----CCceEEEE-EeC-CCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcceeEEE
Q psy14552 93 LQGGRLIYFEMHPVSDKKES-----DKKKIVRC-AVN-QRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMA 165 (290)
Q Consensus 93 l~~g~i~~~~~~~~~~~~~~-----~~~~Ii~a-s~~-~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~ 165 (290)
..+|+|..+|.+....+.+- +.--.-.| +.+ .++++.++.||+++++.+...+.-+.... +-.+||-.+.
T Consensus 35 ~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~k---EH~~EV~Svd 111 (311)
T KOG0277|consen 35 AGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFK---EHKREVYSVD 111 (311)
T ss_pred ccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHH---hhhhheEEec
Confidence 46799999988633333221 11112333 344 45677777799999998664222222211 2346776665
Q ss_pred eeeCCCCCccccEEEEEeCCCeEEEEEeC
Q psy14552 166 LSNAPSGEQMSRFLAVGLADNTVRLISLA 194 (290)
Q Consensus 166 i~~~~~~~~~~~~l~VGl~dg~v~i~~l~ 194 (290)
-.+. +...++.+.|||+|.+|.-+
T Consensus 112 wn~~-----~r~~~ltsSWD~TiKLW~~~ 135 (311)
T KOG0277|consen 112 WNTV-----RRRIFLTSSWDGTIKLWDPN 135 (311)
T ss_pred cccc-----cceeEEeeccCCceEeecCC
Confidence 4332 34556677999999999854
|
|
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=90.82 E-value=16 Score=35.06 Aligned_cols=91 Identities=21% Similarity=0.270 Sum_probs=56.0
Q ss_pred cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccC
Q psy14552 157 MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTL 236 (290)
Q Consensus 157 l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~ 236 (290)
...++.|+.+.+... .-+..++|.-||.|.+|.+.. .+.+++-.. +..+.-+. ..
T Consensus 282 ~e~~~esve~~~~ss---~lpL~A~G~vdG~i~iyD~a~---~~~R~~c~h---e~~V~~l~----------------w~ 336 (399)
T KOG0296|consen 282 QEELDESVESIPSSS---KLPLAACGSVDGTIAIYDLAA---STLRHICEH---EDGVTKLK----------------WL 336 (399)
T ss_pred chhhhhhhhhccccc---ccchhhcccccceEEEEeccc---chhheeccC---CCceEEEE----------------Ec
Confidence 345555555554432 357888999999999999852 222221111 12222222 24
Q ss_pred CceEEEEEecCceEEEEEEeCCCCcccccceEEecCcceEE
Q psy14552 237 GNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKL 277 (290)
Q Consensus 237 ~~~~L~iGl~dG~l~~~~~d~~~~~l~~~~~~~lG~~pv~l 277 (290)
+..||+-+..||.+.-| |..+|.+ ++.+-|.+---+
T Consensus 337 ~t~~l~t~c~~g~v~~w--DaRtG~l---~~~y~GH~~~Il 372 (399)
T KOG0296|consen 337 NTDYLLTACANGKVRQW--DARTGQL---KFTYTGHQMGIL 372 (399)
T ss_pred CcchheeeccCceEEee--eccccce---EEEEecCchhee
Confidence 46789999999999766 6778876 466777654333
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=89.52 E-value=16 Score=34.35 Aligned_cols=133 Identities=14% Similarity=0.158 Sum_probs=72.4
Q ss_pred cCceEEEEeeCCeEEEEEecCC-CceecCCCceEEEEEeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcce-e
Q psy14552 85 NQRQIVIALQGGRLIYFEMHPV-SDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEV-L 162 (290)
Q Consensus 85 n~~qv~ial~~g~i~~~~~~~~-~~~~~~~~~~Ii~as~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei-~ 162 (290)
.+..+.+...+|.+..+..... ..|..+... ...-...+.++.++..++.++.++... +.+ ..+...++... +
T Consensus 240 ~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~-~~~p~~~~~~vyv~~~~G~l~~~d~~t--G~~--~W~~~~~~~~~~s 314 (377)
T TIGR03300 240 DGGQVYAVSYQGRVAALDLRSGRVLWKRDASS-YQGPAVDDNRLYVTDADGVVVALDRRS--GSE--LWKNDELKYRQLT 314 (377)
T ss_pred ECCEEEEEEcCCEEEEEECCCCcEEEeeccCC-ccCceEeCCEEEEECCCCeEEEEECCC--CcE--EEccccccCCccc
Confidence 3567777777888888877533 246553211 111123456677776788888887654 431 11111222211 1
Q ss_pred EEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcc--eEEEEEEecCCCCCCCCCCCCCccCCceE
Q psy14552 163 CMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLA--ESLVMIEMGASDPTSSDEPAGPVTLGNLY 240 (290)
Q Consensus 163 ~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p--~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (290)
...+ ...+++++..||.++.++.+.. +.+.+..++.-+ .+-++. +. .
T Consensus 315 sp~i--------~g~~l~~~~~~G~l~~~d~~tG---~~~~~~~~~~~~~~~sp~~~-------------------~~-~ 363 (377)
T TIGR03300 315 APAV--------VGGYLVVGDFEGYLHWLSREDG---SFVARLKTDGSGIASPPVVV-------------------GD-G 363 (377)
T ss_pred cCEE--------ECCEEEEEeCCCEEEEEECCCC---CEEEEEEcCCCccccCCEEE-------------------CC-E
Confidence 1111 1357889999999888775432 222233333211 111122 22 3
Q ss_pred EEEEecCceEEEE
Q psy14552 241 LYVGLQNGALLRM 253 (290)
Q Consensus 241 L~iGl~dG~l~~~ 253 (290)
||++..||.|+.|
T Consensus 364 l~v~~~dG~l~~~ 376 (377)
T TIGR03300 364 LLVQTRDGDLYAF 376 (377)
T ss_pred EEEEeCCceEEEe
Confidence 9999999999877
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=89.38 E-value=17 Score=34.30 Aligned_cols=105 Identities=12% Similarity=0.175 Sum_probs=66.0
Q ss_pred ceEEEEeecCceEEEEeeCCeEEEEEecCCC---ceecCCCceEEEEEe--CC--CEEEEEEeCCeEEEEEEcCCCCCce
Q psy14552 77 KKIVRCAVNQRQIVIALQGGRLIYFEMHPVS---DKKESDKKKIVRCAV--NQ--RQIVIALQGGRLIYFEMHPETGILD 149 (290)
Q Consensus 77 ~~Iv~as~n~~qv~ial~~g~i~~~~~~~~~---~~~~~~~~~Ii~as~--~~--~~l~Val~~~~i~~l~l~~~~~~l~ 149 (290)
-.|.+.+++.+|++=--++-+|..|.|.... .+..+.+ .|.|+.- .. +.++=|..|+.|.++..++ ..
T Consensus 44 ~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~Hag-sitaL~F~~~~S~shLlS~sdDG~i~iw~~~~----W~ 118 (362)
T KOG0294|consen 44 GSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAG-SITALKFYPPLSKSHLLSGSDDGHIIIWRVGS----WE 118 (362)
T ss_pred cceeEEEecceeEeccCCCCcEEEEeccchhhhcceecccc-ceEEEEecCCcchhheeeecCCCcEEEEEcCC----eE
Confidence 4588999999999988888899888875433 2322332 2455532 21 2455555688999988765 32
Q ss_pred eeeeee-ecCcceeEEEeeeCCCCCccccEEEEEeC-CCeEEEEEeC
Q psy14552 150 ECSETI-QMESEVLCMALSNAPSGEQMSRFLAVGLA-DNTVRLISLA 194 (290)
Q Consensus 150 ~~~~~~-~l~~ei~~l~i~~~~~~~~~~~~l~VGl~-dg~v~i~~l~ 194 (290)
. ++.. .--..|+-+++.|. ..|+...+ |+.++.|+|-
T Consensus 119 ~-~~slK~H~~~Vt~lsiHPS-------~KLALsVg~D~~lr~WNLV 157 (362)
T KOG0294|consen 119 L-LKSLKAHKGQVTDLSIHPS-------GKLALSVGGDQVLRTWNLV 157 (362)
T ss_pred E-eeeecccccccceeEecCC-------CceEEEEcCCceeeeehhh
Confidence 2 2222 22345888888764 24555554 8898888874
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=88.90 E-value=26 Score=34.70 Aligned_cols=107 Identities=17% Similarity=0.251 Sum_probs=64.4
Q ss_pred CCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEee
Q psy14552 124 QRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKN 203 (290)
Q Consensus 124 ~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~ 203 (290)
+++++ ...++.+.+..+-. .+++.- ...+--.+|+|+.+... +..|+.|.-||.+.+|.+. .+..+.
T Consensus 208 gs~ia-sAgGn~vkVWDl~~-G~qll~--~~~~H~KtVTcL~l~s~------~~rLlS~sLD~~VKVfd~t---~~Kvv~ 274 (487)
T KOG0310|consen 208 GSLIA-SAGGNSVKVWDLTT-GGQLLT--SMFNHNKTVTCLRLASD------STRLLSGSLDRHVKVFDTT---NYKVVH 274 (487)
T ss_pred CCEEE-EcCCCeEEEEEecC-Cceehh--hhhcccceEEEEEeecC------CceEeecccccceEEEEcc---ceEEEE
Confidence 34444 44678888887764 232211 11224568999999632 3667777779999999965 366665
Q ss_pred EEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEE--EeCCCCc
Q psy14552 204 LQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMV--VDQTSGD 261 (290)
Q Consensus 204 ~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~--~d~~~~~ 261 (290)
.-.. |-.++-+.. ..+...+.+||.||.+.--. ++.++..
T Consensus 275 s~~~---~~pvLsiav---------------s~dd~t~viGmsnGlv~~rr~~~k~k~s~ 316 (487)
T KOG0310|consen 275 SWKY---PGPVLSIAV---------------SPDDQTVVIGMSNGLVSIRRREVKKKPSK 316 (487)
T ss_pred eeec---ccceeeEEe---------------cCCCceEEEecccceeeeehhhcccCCCc
Confidence 4443 333333332 12345599999999887542 4554443
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=88.04 E-value=38 Score=35.59 Aligned_cols=171 Identities=14% Similarity=0.241 Sum_probs=103.5
Q ss_pred ceEEEEeec--CceEEEEeeCCeEEEEEecCCC---ceecCCCceEEEEEeC--CCEEEEEEeC-CeEEEEEEcCCCCCc
Q psy14552 77 KKIVRCAVN--QRQIVIALQGGRLIYFEMHPVS---DKKESDKKKIVRCAVN--QRQIVIALQG-GRLIYFEMHPETGIL 148 (290)
Q Consensus 77 ~~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~---~~~~~~~~~Ii~as~~--~~~l~Val~~-~~i~~l~l~~~~~~l 148 (290)
..+.+|++. -.-++++.++|...++|+.+.. .+. .....|.+++.| +..+++|+.. +.+.+.+...++.
T Consensus 266 ~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LS-is~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY-- 342 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLS-ISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY-- 342 (893)
T ss_pred cceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEee-cccceeeEEEecccCCEEEEcCCccceEEEEEeeccce--
Confidence 567777777 4567778889999888885432 111 233446555444 7789999863 5677777664311
Q ss_pred eeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCC
Q psy14552 149 DECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSD 228 (290)
Q Consensus 149 ~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~ 228 (290)
++++..--.+++|++..+. ..+++.|..||.|.+|.....-|+.... . .+ ..+..+++.
T Consensus 343 --VlKQQgH~~~i~~l~YSpD------gq~iaTG~eDgKVKvWn~~SgfC~vTFt--e-Ht--s~Vt~v~f~-------- 401 (893)
T KOG0291|consen 343 --VLKQQGHSDRITSLAYSPD------GQLIATGAEDGKVKVWNTQSGFCFVTFT--E-HT--SGVTAVQFT-------- 401 (893)
T ss_pred --eeeccccccceeeEEECCC------CcEEEeccCCCcEEEEeccCceEEEEec--c-CC--CceEEEEEE--------
Confidence 1222222346788877643 4799999999999999964221322221 1 11 122233331
Q ss_pred CCCCCccCCceEEEEEecCceEEEEEEeCCCCcccccceEEecCcceEEEEEEeC
Q psy14552 229 EPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQ 283 (290)
Q Consensus 229 ~~~~~~~~~~~~L~iGl~dG~l~~~~~d~~~~~l~~~~~~~lG~~pv~l~~~~~~ 283 (290)
.....|+..--||.+--+.+.. + ..-+.+-+..|+.+..+...
T Consensus 402 -------~~g~~llssSLDGtVRAwDlkR--Y---rNfRTft~P~p~QfscvavD 444 (893)
T KOG0291|consen 402 -------ARGNVLLSSSLDGTVRAWDLKR--Y---RNFRTFTSPEPIQFSCVAVD 444 (893)
T ss_pred -------ecCCEEEEeecCCeEEeeeecc--c---ceeeeecCCCceeeeEEEEc
Confidence 2233488888899887776533 1 12245678999999887765
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=87.66 E-value=4.5 Score=40.68 Aligned_cols=74 Identities=18% Similarity=0.302 Sum_probs=48.9
Q ss_pred EEEEeC--CCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCC
Q psy14552 118 VRCAVN--QRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAP 195 (290)
Q Consensus 118 i~as~~--~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~ 195 (290)
++|+.+ ...+++||.|++|+++..... .... ...+--+++++..+. ..+++||...|.+..|.+.
T Consensus 263 ~~ca~sp~E~kLvlGC~DgSiiLyD~~~~---~t~~---~ka~~~P~~iaWHp~------gai~~V~s~qGelQ~FD~A- 329 (545)
T PF11768_consen 263 ICCARSPSEDKLVLGCEDGSIILYDTTRG---VTLL---AKAEFIPTLIAWHPD------GAIFVVGSEQGELQCFDMA- 329 (545)
T ss_pred eEEecCcccceEEEEecCCeEEEEEcCCC---eeee---eeecccceEEEEcCC------CcEEEEEcCCceEEEEEee-
Confidence 455544 445999999999999986642 2222 233445666666543 5789999999999999874
Q ss_pred CCceeEeeEEec
Q psy14552 196 QDCLKQKNLQGL 207 (290)
Q Consensus 196 ~~~l~~~~~~~L 207 (290)
|..++.+.+
T Consensus 330 ---Lspi~~qLl 338 (545)
T PF11768_consen 330 ---LSPIKMQLL 338 (545)
T ss_pred ---cCccceeec
Confidence 444444444
|
|
| >KOG2321|consensus | Back alignment and domain information |
|---|
Probab=87.36 E-value=8 Score=39.15 Aligned_cols=123 Identities=15% Similarity=0.217 Sum_probs=73.3
Q ss_pred EEEEEeCCeEEEEEEcCCCCCceeeeeeeecC-cceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCc---eeEe
Q psy14552 127 IVIALQGGRLIYFEMHPETGILDECSETIQME-SEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDC---LKQK 202 (290)
Q Consensus 127 l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~-~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~---l~~~ 202 (290)
+.++.++..|+=|.|+. |.+ +.+.... .++-++.+.+. ...|++|+.||.|..|.--..+. |...
T Consensus 148 ly~~gsg~evYRlNLEq--Grf---L~P~~~~~~~lN~v~in~~------hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~ 216 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQ--GRF---LNPFETDSGELNVVSINEE------HGLLACGTEDGVVEFWDPRDKSRVGTLDAA 216 (703)
T ss_pred EEEeecCcceEEEEccc--ccc---ccccccccccceeeeecCc------cceEEecccCceEEEecchhhhhheeeecc
Confidence 45554677788788876 543 3344433 55666766543 56899999999999886321111 1111
Q ss_pred eEEecCC-----cceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeCCCCcccccceEEecCcceEE
Q psy14552 203 NLQGLPD-----LAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKL 277 (290)
Q Consensus 203 ~~~~L~~-----~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~~~~~l~~~~~~~lG~~pv~l 277 (290)
. .+.. ...++..+.|. +..+.+-||+.+|.++-|.+-...--+ .....+.-|++.
T Consensus 217 ~--~v~s~pg~~~~~svTal~F~---------------d~gL~~aVGts~G~v~iyDLRa~~pl~---~kdh~~e~pi~~ 276 (703)
T KOG2321|consen 217 S--SVNSHPGGDAAPSVTALKFR---------------DDGLHVAVGTSTGSVLIYDLRASKPLL---VKDHGYELPIKK 276 (703)
T ss_pred c--ccCCCccccccCcceEEEec---------------CCceeEEeeccCCcEEEEEcccCCcee---ecccCCccceee
Confidence 1 1111 22445555552 236789999999999999886543332 234566666666
Q ss_pred EEE
Q psy14552 278 FKI 280 (290)
Q Consensus 278 ~~~ 280 (290)
...
T Consensus 277 l~~ 279 (703)
T KOG2321|consen 277 LDW 279 (703)
T ss_pred ecc
Confidence 444
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=87.26 E-value=1.9 Score=28.92 Aligned_cols=36 Identities=25% Similarity=0.363 Sum_probs=30.3
Q ss_pred eeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCC
Q psy14552 154 TIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAP 195 (290)
Q Consensus 154 ~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~ 195 (290)
...++.+|.+++..|. -..+++|+.+|.|.+|.++.
T Consensus 7 ~k~l~~~v~~~~w~P~------mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 7 EKNLPSRVSCMSWCPT------MDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred ccCCCCcEEEEEECCC------CCEEEEEECCCeEEEEECCC
Confidence 4567888999999864 57999999999999999863
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=87.15 E-value=39 Score=34.82 Aligned_cols=146 Identities=14% Similarity=0.155 Sum_probs=75.7
Q ss_pred eEEEEeec--CceEEEEeeCCeEEEEEecCCCceecCCCceEEEEEeCCCEEEEEEeCCeEEEEEEcCCCCCceee----
Q psy14552 78 KIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDEC---- 151 (290)
Q Consensus 78 ~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~~~~~~Ii~as~~~~~l~Val~~~~i~~l~l~~~~~~l~~~---- 151 (290)
+|++.+.+ .+|++++.++|.|=.. +....|.... .+....++..=.++ |-...++|+..- ++++.|.
T Consensus 27 ~I~slA~s~kS~~lAvsRt~g~IEiw--N~~~~w~~~~---vi~g~~drsIE~L~-W~e~~RLFS~g~-sg~i~EwDl~~ 99 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRTDGNIEIW--NLSNNWFLEP---VIHGPEDRSIESLA-WAEGGRLFSSGL-SGSITEWDLHT 99 (691)
T ss_pred ceEEEEEeccCCceeeeccCCcEEEE--ccCCCceeeE---EEecCCCCceeeEE-EccCCeEEeecC-CceEEEEeccc
Confidence 35555554 7899999999966433 3334564410 12222222221111 222334444443 1333221
Q ss_pred ----eeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCc-ceEEEEEEecCCCCCC
Q psy14552 152 ----SETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDL-AESLVMIEMGASDPTS 226 (290)
Q Consensus 152 ----~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~-p~Sl~~~~~~~~~~~~ 226 (290)
...-.....|=.+++.+. ...++||+.||++..++..++. ++- +..|+.+ -|-|.+. ..
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~------~~~l~IgcddGvl~~~s~~p~~-I~~--~r~l~rq~sRvLsls-w~------ 163 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPE------NTILAIGCDDGVLYDFSIGPDK-ITY--KRSLMRQKSRVLSLS-WN------ 163 (691)
T ss_pred CceeEEecCCCcceeEEEeCCc------cceEEeecCCceEEEEecCCce-EEE--EeecccccceEEEEE-ec------
Confidence 111123445555666543 5789999999988888876542 222 2345544 3434333 21
Q ss_pred CCCCCCCccCCceEEEEEecCceEEEEEE
Q psy14552 227 SDEPAGPVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 227 ~~~~~~~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
.....|+.|..||.+--+.+
T Consensus 164 ---------~~~~~i~~Gs~Dg~Iriwd~ 183 (691)
T KOG2048|consen 164 ---------PTGTKIAGGSIDGVIRIWDV 183 (691)
T ss_pred ---------CCccEEEecccCceEEEEEc
Confidence 12334999999998776654
|
|
| >KOG0270|consensus | Back alignment and domain information |
|---|
Probab=86.95 E-value=19 Score=35.35 Aligned_cols=115 Identities=12% Similarity=0.208 Sum_probs=73.9
Q ss_pred CCceEEEEeec--CceEEEEee-CCeEEEEEec----CCCceecCCCceEEEEEeC-CCEEEEEEeCCeEEEEEEcCCCC
Q psy14552 75 DKKKIVRCAVN--QRQIVIALQ-GGRLIYFEMH----PVSDKKESDKKKIVRCAVN-QRQIVIALQGGRLIYFEMHPETG 146 (290)
Q Consensus 75 ~~~~Iv~as~n--~~qv~ial~-~g~i~~~~~~----~~~~~~~~~~~~Ii~as~~-~~~l~Val~~~~i~~l~l~~~~~ 146 (290)
.+.+|-+..-+ .+++++.=+ +|++.++-+. ....|.-...++.++-... ...+++++.||++++|.+... +
T Consensus 285 ~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~-~ 363 (463)
T KOG0270|consen 285 HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP-G 363 (463)
T ss_pred cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCC-C
Confidence 45556565555 344443322 4567666654 2346888777776666544 344888888999999998862 3
Q ss_pred CceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCC
Q psy14552 147 ILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQD 197 (290)
Q Consensus 147 ~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~ 197 (290)
. .+.....-..+|+++++... ...++.-+..|++|.+|+++..+
T Consensus 364 ~--~vwt~~AHd~~ISgl~~n~~-----~p~~l~t~s~d~~Vklw~~~~~~ 407 (463)
T KOG0270|consen 364 K--PVWTLKAHDDEISGLSVNIQ-----TPGLLSTASTDKVVKLWKFDVDS 407 (463)
T ss_pred C--ceeEEEeccCCcceEEecCC-----CCcceeeccccceEEEEeecCCC
Confidence 2 11111234679999998643 24567777789999999997543
|
|
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=86.49 E-value=30 Score=32.74 Aligned_cols=70 Identities=10% Similarity=0.133 Sum_probs=51.7
Q ss_pred EEE-EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCC
Q psy14552 118 VRC-AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAP 195 (290)
Q Consensus 118 i~a-s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~ 195 (290)
++| ++++..+|=|.+|.+|+++.+... .++..++ .-...|+++.|.+.. ....|+.|..||.|.+|..++
T Consensus 46 itavAVs~~~~aSGssDetI~IYDm~k~-~qlg~ll---~HagsitaL~F~~~~----S~shLlS~sdDG~i~iw~~~~ 116 (362)
T KOG0294|consen 46 ITALAVSGPYVASGSSDETIHIYDMRKR-KQLGILL---SHAGSITALKFYPPL----SKSHLLSGSDDGHIIIWRVGS 116 (362)
T ss_pred eeEEEecceeEeccCCCCcEEEEeccch-hhhccee---ccccceEEEEecCCc----chhheeeecCCCcEEEEEcCC
Confidence 555 888888888888999999998862 3333332 236789999986542 234899999999999999874
|
|
| >KOG0319|consensus | Back alignment and domain information |
|---|
Probab=86.35 E-value=5.6 Score=41.10 Aligned_cols=105 Identities=11% Similarity=0.090 Sum_probs=67.7
Q ss_pred CceEEEEeeCCeEEEEEecCCCceecCCCceEEEE-E--eCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCccee
Q psy14552 86 QRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRC-A--VNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVL 162 (290)
Q Consensus 86 ~~qv~ial~~g~i~~~~~~~~~~~~~~~~~~Ii~a-s--~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~ 162 (290)
+.++++|...+++-|+.+....--..+.+.+++-+ + ..+.-++-+..|.++++..++++..+...+.+-....++|.
T Consensus 336 ~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svg 415 (775)
T KOG0319|consen 336 ESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVG 415 (775)
T ss_pred cceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccc
Confidence 48899999999998886643321122455555444 3 33333444446999999999653222111111112567888
Q ss_pred EEEeeeCCCCCccccEEEEEeCCCeEEEEEeCC
Q psy14552 163 CMALSNAPSGEQMSRFLAVGLADNTVRLISLAP 195 (290)
Q Consensus 163 ~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~ 195 (290)
++++.. .+..|++-+..|+++.+|.++.
T Consensus 416 ava~~~-----~~asffvsvS~D~tlK~W~l~~ 443 (775)
T KOG0319|consen 416 AVAGSK-----LGASFFVSVSQDCTLKLWDLPK 443 (775)
T ss_pred eeeecc-----cCccEEEEecCCceEEEecCCC
Confidence 888842 2688999999999999999975
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=85.72 E-value=39 Score=33.43 Aligned_cols=149 Identities=17% Similarity=0.205 Sum_probs=86.9
Q ss_pred CCceEEEEeec-Cce-EEEEeeCCeEEEEEecC----CCceecCCCce---E--EEEEeCCCEEEEEEeCCeEEEEEEcC
Q psy14552 75 DKKKIVRCAVN-QRQ-IVIALQGGRLIYFEMHP----VSDKKESDKKK---I--VRCAVNQRQIVIALQGGRLIYFEMHP 143 (290)
Q Consensus 75 ~~~~Iv~as~n-~~q-v~ial~~g~i~~~~~~~----~~~~~~~~~~~---I--i~as~~~~~l~Val~~~~i~~l~l~~ 143 (290)
.+.+|-+|... +.+ ++++ ++.+=+|+..+. ...+.+|.+++ | -..+-.++.++++-..+.|+++....
T Consensus 256 ~~fPi~~a~f~p~G~~~i~~-s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT 334 (514)
T KOG2055|consen 256 EKFPIQKAEFAPNGHSVIFT-SGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKT 334 (514)
T ss_pred ccCccceeeecCCCceEEEe-cccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhh
Confidence 34456666555 333 4444 444333333332 22344444443 2 11123344677776788888886553
Q ss_pred CCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCc-ceEEEEEEecCC
Q psy14552 144 ETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDL-AESLVMIEMGAS 222 (290)
Q Consensus 144 ~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~-p~Sl~~~~~~~~ 222 (290)
+ +.+....++..++-+.|.. .+..|.+...+|.|.+|.+....++..- ..-|.+ -.|++...
T Consensus 335 --~---eli~s~KieG~v~~~~fsS------dsk~l~~~~~~GeV~v~nl~~~~~~~rf--~D~G~v~gts~~~S~---- 397 (514)
T KOG2055|consen 335 --K---ELITSFKIEGVVSDFTFSS------DSKELLASGGTGEVYVWNLRQNSCLHRF--VDDGSVHGTSLCISL---- 397 (514)
T ss_pred --h---hhhheeeeccEEeeEEEec------CCcEEEEEcCCceEEEEecCCcceEEEE--eecCccceeeeeecC----
Confidence 3 3344667889898888862 2467777778999999999765443332 333443 24554442
Q ss_pred CCCCCCCCCCCccCCceEEEEEecCceEEEEEE
Q psy14552 223 DPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
+..||-+|...|.+=-|..
T Consensus 398 --------------ng~ylA~GS~~GiVNIYd~ 416 (514)
T KOG2055|consen 398 --------------NGSYLATGSDSGIVNIYDG 416 (514)
T ss_pred --------------CCceEEeccCcceEEEecc
Confidence 3348999999999887753
|
|
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=85.34 E-value=16 Score=33.66 Aligned_cols=115 Identities=16% Similarity=0.250 Sum_probs=61.8
Q ss_pred CceEEEEeecCceEEEEeeCCeEEEEEecCCCceec-CCCceEEEE-EeCCCEEEEEEeC-CeEEEEEEcCCCCCceeee
Q psy14552 76 KKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKE-SDKKKIVRC-AVNQRQIVIALQG-GRLIYFEMHPETGILDECS 152 (290)
Q Consensus 76 ~~~Iv~as~n~~qv~ial~~g~i~~~~~~~~~~~~~-~~~~~Ii~a-s~~~~~l~Val~~-~~i~~l~l~~~~~~l~~~~ 152 (290)
+-.+...+-.+.|+++.=.+.+|.++-......... +-..+..-+ ..+.+.+.+...+ |+|.+++.+. |.-+.
T Consensus 108 eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyps----Lkpv~ 183 (313)
T KOG1407|consen 108 ENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPS----LKPVQ 183 (313)
T ss_pred cceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccc----ccccc
Confidence 334444555566666555555565554322111111 111111122 2344445555554 8899998774 22211
Q ss_pred eeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCcee
Q psy14552 153 ETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLK 200 (290)
Q Consensus 153 ~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~ 200 (290)
....-|.+=.|++|.|. ..|+++|..|-.+.+|.+++--|+.
T Consensus 184 si~AH~snCicI~f~p~------GryfA~GsADAlvSLWD~~ELiC~R 225 (313)
T KOG1407|consen 184 SIKAHPSNCICIEFDPD------GRYFATGSADALVSLWDVDELICER 225 (313)
T ss_pred ccccCCcceEEEEECCC------CceEeeccccceeeccChhHhhhhe
Confidence 11124666677777643 5899999999999999887543433
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=85.27 E-value=31 Score=33.53 Aligned_cols=72 Identities=17% Similarity=0.166 Sum_probs=43.6
Q ss_pred eCCCEEEEEEeCCeEEEEEEcCCCCCceee--ee----eeecCcceeEEEeeeCC--CCCccccEEEEEeCCCeEEEEEe
Q psy14552 122 VNQRQIVIALQGGRLIYFEMHPETGILDEC--SE----TIQMESEVLCMALSNAP--SGEQMSRFLAVGLADNTVRLISL 193 (290)
Q Consensus 122 ~~~~~l~Val~~~~i~~l~l~~~~~~l~~~--~~----~~~l~~ei~~l~i~~~~--~~~~~~~~l~VGl~dg~v~i~~l 193 (290)
.+-..++||..++.+.++.+.- ..+.-. .. ...-...|+++.|.... .....+..|+||+..|.+..|++
T Consensus 95 S~iGFvaigy~~G~l~viD~RG--PavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkI 172 (395)
T PF08596_consen 95 SDIGFVAIGYESGSLVVIDLRG--PAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKI 172 (395)
T ss_dssp -BTSEEEEEETTSEEEEEETTT--TEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEE
T ss_pred CCCcEEEEEecCCcEEEEECCC--CeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEE
Confidence 3456799999899998887753 111110 00 01123356666665322 22346799999999999999998
Q ss_pred CC
Q psy14552 194 AP 195 (290)
Q Consensus 194 ~~ 195 (290)
.+
T Consensus 173 lp 174 (395)
T PF08596_consen 173 LP 174 (395)
T ss_dssp EE
T ss_pred ec
Confidence 65
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG2445|consensus | Back alignment and domain information |
|---|
Probab=85.17 E-value=34 Score=32.27 Aligned_cols=106 Identities=18% Similarity=0.244 Sum_probs=60.5
Q ss_pred EEEEEeCCeEEEEEEcCCCCCceeeeeeeecCccee--------------EEEeeeCCCCCccccEEEEEeCC-----Ce
Q psy14552 127 IVIALQGGRLIYFEMHPETGILDECSETIQMESEVL--------------CMALSNAPSGEQMSRFLAVGLAD-----NT 187 (290)
Q Consensus 127 l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~--------------~l~i~~~~~~~~~~~~l~VGl~d-----g~ 187 (290)
++-+..|+.||+++..+- ..| ...++.+|+. |++-. .++...++++||..+ +.
T Consensus 129 lA~~~aDG~lRIYEA~dp-~nL----s~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn---~sr~~~p~iAvgs~e~a~~~~~ 200 (361)
T KOG2445|consen 129 LAAASADGILRIYEAPDP-MNL----SQWTLQHEIQNVIDPPGKNKQPCFCVSWN---PSRMHEPLIAVGSDEDAPHLNK 200 (361)
T ss_pred EEEeccCcEEEEEecCCc-ccc----ccchhhhhhhhccCCcccccCcceEEeec---cccccCceEEEEcccCCccccc
Confidence 333346999999987651 222 2344445544 44443 234467999999975 47
Q ss_pred EEEEEeCCCC-ceeEeeEEecCCc---ceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeC
Q psy14552 188 VRLISLAPQD-CLKQKNLQGLPDL---AESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQ 257 (290)
Q Consensus 188 v~i~~l~~~~-~l~~~~~~~L~~~---p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~ 257 (290)
+.+|..++.. ....+ ..|.+. .++|....- .......|-+|.+|| +--|++..
T Consensus 201 ~~Iye~~e~~rKw~kv--a~L~d~~dpI~di~wAPn--------------~Gr~y~~lAvA~kDg-v~I~~v~~ 257 (361)
T KOG2445|consen 201 VKIYEYNENGRKWLKV--AELPDHTDPIRDISWAPN--------------IGRSYHLLAVATKDG-VRIFKVKV 257 (361)
T ss_pred eEEEEecCCcceeeee--hhcCCCCCcceeeeeccc--------------cCCceeeEEEeecCc-EEEEEEee
Confidence 8888887643 22222 234433 355544421 112234478899999 55577753
|
|
| >KOG1273|consensus | Back alignment and domain information |
|---|
Probab=85.02 E-value=36 Score=32.33 Aligned_cols=170 Identities=14% Similarity=0.192 Sum_probs=89.0
Q ss_pred ecCceEEEEeeCCeEEEEEecCCC--ceecCCCceEEEE---EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecC
Q psy14552 84 VNQRQIVIALQGGRLIYFEMHPVS--DKKESDKKKIVRC---AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQME 158 (290)
Q Consensus 84 ~n~~qv~ial~~g~i~~~~~~~~~--~~~~~~~~~Ii~a---s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~ 158 (290)
.+..++++-+.+|+++...+.... ... ..+..=++| +..+..++-+..|..|..+.+-. |+ +++++.++
T Consensus 33 ~~G~~lAvGc~nG~vvI~D~~T~~iar~l-saH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~--gs---~l~rirf~ 106 (405)
T KOG1273|consen 33 RWGDYLAVGCANGRVVIYDFDTFRIARML-SAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLK--GS---PLKRIRFD 106 (405)
T ss_pred cCcceeeeeccCCcEEEEEccccchhhhh-hccccceeEEEecCCCCEeeeecCCceeEEEeccC--CC---ceeEEEcc
Confidence 347899999999999988765432 100 122221333 45666777777788998887765 43 24566778
Q ss_pred cceeEEEeeeCCCCCccccEEEEEeCCC-eEEEEEeCCCCceeEeeEEecCCc-ceEEEEEEecCCCCCCCCCCCCCccC
Q psy14552 159 SEVLCMALSNAPSGEQMSRFLAVGLADN-TVRLISLAPQDCLKQKNLQGLPDL-AESLVMIEMGASDPTSSDEPAGPVTL 236 (290)
Q Consensus 159 ~ei~~l~i~~~~~~~~~~~~l~VGl~dg-~v~i~~l~~~~~l~~~~~~~L~~~-p~Sl~~~~~~~~~~~~~~~~~~~~~~ 236 (290)
+-|....+.|.. ...+++.=+... .+..++ ++. . ..|+.- +.++-. ....+.-..
T Consensus 107 spv~~~q~hp~k----~n~~va~~~~~sp~vi~~s-~~~---h----~~Lp~d~d~dln~-----------sas~~~fdr 163 (405)
T KOG1273|consen 107 SPVWGAQWHPRK----RNKCVATIMEESPVVIDFS-DPK---H----SVLPKDDDGDLNS-----------SASHGVFDR 163 (405)
T ss_pred Cccceeeecccc----CCeEEEEEecCCcEEEEec-CCc---e----eeccCCCcccccc-----------ccccccccC
Confidence 888777776542 234444334322 333332 111 1 112210 000000 001111123
Q ss_pred CceEEEEEecCceEEEEEEeCCCCcccccceEEecC-cceEEEEEEeCCce
Q psy14552 237 GNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGS-RPVKLFKIRCQGNE 286 (290)
Q Consensus 237 ~~~~L~iGl~dG~l~~~~~d~~~~~l~~~~~~~lG~-~pv~l~~~~~~~~~ 286 (290)
..-|++.|+.-|.+.-|+.+. -+. ....++-+ +.+|-..+..+|..
T Consensus 164 ~g~yIitGtsKGkllv~~a~t--~e~--vas~rits~~~IK~I~~s~~g~~ 210 (405)
T KOG1273|consen 164 RGKYIITGTSKGKLLVYDAET--LEC--VASFRITSVQAIKQIIVSRKGRF 210 (405)
T ss_pred CCCEEEEecCcceEEEEecch--hee--eeeeeechheeeeEEEEeccCcE
Confidence 456899999999999886543 222 22223333 55655555555543
|
|
| >KOG0283|consensus | Back alignment and domain information |
|---|
Probab=84.86 E-value=14 Score=38.38 Aligned_cols=64 Identities=9% Similarity=0.143 Sum_probs=41.7
Q ss_pred CCCEEEEEEeCCeEEEEEEcCCCCCceeeeeee-ecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCC
Q psy14552 123 NQRQIVIALQGGRLIYFEMHPETGILDECSETI-QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAP 195 (290)
Q Consensus 123 ~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~-~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~ 195 (290)
....++|...|..|+++.+.+. .|....+-. ...+++. .+|.. ...|++.|..|..|++|++++
T Consensus 513 ~~~~vLVTSnDSrIRI~d~~~~--~lv~KfKG~~n~~SQ~~-Asfs~------Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 513 DPDEVLVTSNDSRIRIYDGRDK--DLVHKFKGFRNTSSQIS-ASFSS------DGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred CCCeEEEecCCCceEEEeccch--hhhhhhcccccCCccee-eeEcc------CCCEEEEeecCceEEEEeCCC
Confidence 3446899888999999988542 233333322 2333333 34432 258999999999999999864
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=84.66 E-value=44 Score=33.10 Aligned_cols=103 Identities=16% Similarity=0.231 Sum_probs=63.0
Q ss_pred EEEeecCceEEEEeeCCeEEEEEecCCCceecCCCceE---EEE---EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeee
Q psy14552 80 VRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKI---VRC---AVNQRQIVIALQGGRLIYFEMHPETGILDECSE 153 (290)
Q Consensus 80 v~as~n~~qv~ial~~g~i~~~~~~~~~~~~~~~~~~I---i~a---s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~ 153 (290)
-.+|-.+++++++=.+|.|..+.+. ..+|... .+| ++. +..+..+++++.++.|.++.+... .++.
T Consensus 309 FeVShd~~fia~~G~~G~I~lLhak-T~eli~s--~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~-----~~~~ 380 (514)
T KOG2055|consen 309 FEVSHDSNFIAIAGNNGHIHLLHAK-TKELITS--FKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQN-----SCLH 380 (514)
T ss_pred eEecCCCCeEEEcccCceEEeehhh-hhhhhhe--eeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCc-----ceEE
Confidence 3455567788888888999887664 3455441 122 222 444555666667889999998762 2222
Q ss_pred eeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeC
Q psy14552 154 TIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLA 194 (290)
Q Consensus 154 ~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~ 194 (290)
+..-+..+.-.+++.... ..|+++|...|.|-+|..+
T Consensus 381 rf~D~G~v~gts~~~S~n----g~ylA~GS~~GiVNIYd~~ 417 (514)
T KOG2055|consen 381 RFVDDGSVHGTSLCISLN----GSYLATGSDSGIVNIYDGN 417 (514)
T ss_pred EEeecCccceeeeeecCC----CceEEeccCcceEEEeccc
Confidence 333233333333332222 3599999999999999864
|
|
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=84.34 E-value=20 Score=35.32 Aligned_cols=102 Identities=18% Similarity=0.224 Sum_probs=67.1
Q ss_pred EEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCc----ee-
Q psy14552 126 QIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDC----LK- 200 (290)
Q Consensus 126 ~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~----l~- 200 (290)
++.-+..|.++++.++.- + .++.+..+|+.|.++.+.+. ...++||..+|.+++..+..... +.
T Consensus 190 rl~TaS~D~t~k~wdlS~--g---~LLlti~fp~si~av~lDpa------e~~~yiGt~~G~I~~~~~~~~~~~~~~v~~ 258 (476)
T KOG0646|consen 190 RLYTASEDRTIKLWDLSL--G---VLLLTITFPSSIKAVALDPA------ERVVYIGTEEGKIFQNLLFKLSGQSAGVNQ 258 (476)
T ss_pred eEEEecCCceEEEEEecc--c---eeeEEEecCCcceeEEEccc------ccEEEecCCcceEEeeehhcCCcccccccc
Confidence 355555688998888764 3 33557889999999999764 57899999999988776542211 10
Q ss_pred ------EeeEEe-cC---CcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEE
Q psy14552 201 ------QKNLQG-LP---DLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 201 ------~~~~~~-L~---~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
...... .| .-+.+-+.+.+ ++.+ |..|=.||.+.-+.+
T Consensus 259 k~~~~~~t~~~~~~Gh~~~~~ITcLais~----------------Dgtl-LlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 259 KGRHEENTQINVLVGHENESAITCLAIST----------------DGTL-LLSGDEDGKVCVWDI 306 (476)
T ss_pred cccccccceeeeeccccCCcceeEEEEec----------------CccE-EEeeCCCCCEEEEec
Confidence 001111 11 12555556654 4555 999999999987754
|
|
| >KOG2111|consensus | Back alignment and domain information |
|---|
Probab=84.32 E-value=38 Score=32.03 Aligned_cols=68 Identities=21% Similarity=0.273 Sum_probs=39.9
Q ss_pred CceEEEEeecCceEEEEe--eCCeEEEEEecCCCce-ec----CCCceE--EEEEeCCCEEEEEEeCCeEEEEEEcC
Q psy14552 76 KKKIVRCAVNQRQIVIAL--QGGRLIYFEMHPVSDK-KE----SDKKKI--VRCAVNQRQIVIALQGGRLIYFEMHP 143 (290)
Q Consensus 76 ~~~Iv~as~n~~qv~ial--~~g~i~~~~~~~~~~~-~~----~~~~~I--i~as~~~~~l~Val~~~~i~~l~l~~ 143 (290)
...|.+.+.|..--++|. ..|+++=..=...++. .+ .++..| ++-+.+...+||+..-++|++|.+.+
T Consensus 181 ~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 181 DSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred cCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 456778888854444444 4577764432222322 12 122223 22245667799998789999999886
|
|
| >KOG0277|consensus | Back alignment and domain information |
|---|
Probab=83.99 E-value=35 Score=31.44 Aligned_cols=148 Identities=18% Similarity=0.300 Sum_probs=81.7
Q ss_pred eecCCccCCCCeEEEEe----eCCC--eEEEEe-cCCeEEE---eecCcceeeeccCCCCCceEEEEeecCceEEEEeeC
Q psy14552 26 VSGSGFYGTTPTLCCSA----MGDN--SIVQVY-PDGIRHI---GAKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQG 95 (290)
Q Consensus 26 ~~~~gf~~~~~Ti~~~~----~~~~--~ivQVt-~~~v~l~---~~~~~~~~~~~~~~~~~~~Iv~as~n~~qv~ial~~ 95 (290)
++-+.|..+.--+++++ .++| .|+-++ +.+++.. +.+...|. +.=+-.+++|++.|..+
T Consensus 14 vqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~Lfd-----------V~Wse~~e~~~~~a~GD 82 (311)
T KOG0277|consen 14 VQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFD-----------VAWSENHENQVIAASGD 82 (311)
T ss_pred eEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeE-----------eeecCCCcceEEEEecC
Confidence 33456665533333333 2445 377776 7777664 22222222 22233458899999999
Q ss_pred CeEEEEEecCC----CceecCCCceEEEEEeC---CCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcc--eeEEEe
Q psy14552 96 GRLIYFEMHPV----SDKKESDKKKIVRCAVN---QRQIVIALQGGRLIYFEMHPETGILDECSETIQMESE--VLCMAL 166 (290)
Q Consensus 96 g~i~~~~~~~~----~~~~~~~~~~Ii~as~~---~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~e--i~~l~i 166 (290)
|.+-.|..... ..|++ ..+|+.+++-| +.+++.+.||++|.+...+-. .++.. .. .++ |--..+
T Consensus 83 GSLrl~d~~~~s~Pi~~~kE-H~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~-~Sv~T----f~-gh~~~Iy~a~~ 155 (311)
T KOG0277|consen 83 GSLRLFDLTMPSKPIHKFKE-HKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP-NSVQT----FN-GHNSCIYQAAF 155 (311)
T ss_pred ceEEEeccCCCCcchhHHHh-hhhheEEeccccccceeEEeeccCCceEeecCCCC-cceEe----ec-CCccEEEEEec
Confidence 99987764322 22333 45677888543 445888899999988765431 12211 11 111 111222
Q ss_pred eeCCCCCccccEEEEEeCCCeEEEEEeCCC
Q psy14552 167 SNAPSGEQMSRFLAVGLADNTVRLISLAPQ 196 (290)
Q Consensus 167 ~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~ 196 (290)
.|. ....++-..+||.+.+|.+...
T Consensus 156 sp~-----~~nlfas~Sgd~~l~lwdvr~~ 180 (311)
T KOG0277|consen 156 SPH-----IPNLFASASGDGTLRLWDVRSP 180 (311)
T ss_pred CCC-----CCCeEEEccCCceEEEEEecCC
Confidence 222 1345555567999999998643
|
|
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=83.60 E-value=52 Score=33.14 Aligned_cols=160 Identities=14% Similarity=0.151 Sum_probs=80.7
Q ss_pred CCCceEEEEeecCceEEEEeeCC---eEEEEEe---cC----CCceecCCCceE-EEE-EeCCCEEEEEEeCCeEEEEEE
Q psy14552 74 SDKKKIVRCAVNQRQIVIALQGG---RLIYFEM---HP----VSDKKESDKKKI-VRC-AVNQRQIVIALQGGRLIYFEM 141 (290)
Q Consensus 74 ~~~~~Iv~as~n~~qv~ial~~g---~i~~~~~---~~----~~~~~~~~~~~I-i~a-s~~~~~l~Val~~~~i~~l~l 141 (290)
+.|.+||+|-.-|+-=+-.++|| .+.++.+ +. ..++.|.+...| ... +.++.+++|........+|.=
T Consensus 164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DR 243 (641)
T KOG0772|consen 164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDR 243 (641)
T ss_pred cCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEcc
Confidence 45556666655555444444443 2333322 11 123344344444 222 677788666655555555432
Q ss_pred cCCCCCceeeee----------eeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCC-CceeEeeEEecCCc
Q psy14552 142 HPETGILDECSE----------TIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQ-DCLKQKNLQGLPDL 210 (290)
Q Consensus 142 ~~~~~~l~~~~~----------~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~-~~l~~~~~~~L~~~ 210 (290)
+- ..+.++.+ +.---.++.|-+..|.. +..||-++ .||++++|.++.. +.+++++...-+..
T Consensus 244 dG--~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~----k~~FlT~s-~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 244 DG--FEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDN----KEEFLTCS-YDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred CC--ceeeeeeccchhhhhhhccCCceeeeeccccccCc----ccceEEec-CCCcEEEEecCCchhheeEEeeccCCCc
Confidence 21 11222211 00012356677776653 34555443 5999999998643 45777765554433
Q ss_pred ceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEE
Q psy14552 211 AESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 211 p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
......+.++. +++. +-.|-.||.+--+..
T Consensus 317 Rv~~tsC~~nr--------------dg~~-iAagc~DGSIQ~W~~ 346 (641)
T KOG0772|consen 317 RVPVTSCAWNR--------------DGKL-IAAGCLDGSIQIWDK 346 (641)
T ss_pred ccCceeeecCC--------------Ccch-hhhcccCCceeeeec
Confidence 23333444432 2344 677888888876653
|
|
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=83.59 E-value=43 Score=32.18 Aligned_cols=148 Identities=15% Similarity=0.292 Sum_probs=81.1
Q ss_pred EEEEeecCceEEEEeeCCeEEEEEecC-CCceec--CCCce-EEEEEeC--CCEEEEEEeCCeEEEEEEcCCCCCceeee
Q psy14552 79 IVRCAVNQRQIVIALQGGRLIYFEMHP-VSDKKE--SDKKK-IVRCAVN--QRQIVIALQGGRLIYFEMHPETGILDECS 152 (290)
Q Consensus 79 Iv~as~n~~qv~ial~~g~i~~~~~~~-~~~~~~--~~~~~-Ii~as~~--~~~l~Val~~~~i~~l~l~~~~~~l~~~~ 152 (290)
+-+++.+.++-++|..+|.=.-|-.+. .++|.- +.++. +++|+-+ +..+|-|--++.|.++.... +. +
T Consensus 67 vFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~st--g~--~-- 140 (399)
T KOG0296|consen 67 VFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVST--GG--E-- 140 (399)
T ss_pred eEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEccc--Cc--e--
Confidence 445666666667777666433332221 233322 33333 4555443 33455554578899998765 32 1
Q ss_pred eeeecC---cceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCC
Q psy14552 153 ETIQME---SEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDE 229 (290)
Q Consensus 153 ~~~~l~---~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~ 229 (290)
..++. .+|.=+.-. ++..+|+.|..||++..|+++.........- ...| +.+| .+.
T Consensus 141 -~~~~~~e~~dieWl~WH------p~a~illAG~~DGsvWmw~ip~~~~~kv~~G---h~~~-----ct~G------~f~ 199 (399)
T KOG0296|consen 141 -QWKLDQEVEDIEWLKWH------PRAHILLAGSTDGSVWMWQIPSQALCKVMSG---HNSP-----CTCG------EFI 199 (399)
T ss_pred -EEEeecccCceEEEEec------ccccEEEeecCCCcEEEEECCCcceeeEecC---CCCC-----cccc------ccc
Confidence 22332 344444443 3578999999999999999975321111110 1111 1111 122
Q ss_pred CCCCccCCceEEEEEecCceEEEEEEeCCCCc
Q psy14552 230 PAGPVTLGNLYLYVGLQNGALLRMVVDQTSGD 261 (290)
Q Consensus 230 ~~~~~~~~~~~L~iGl~dG~l~~~~~d~~~~~ 261 (290)
| .++. ++.|--||.++-+ ++.+|+
T Consensus 200 p-----dGKr-~~tgy~dgti~~W--n~ktg~ 223 (399)
T KOG0296|consen 200 P-----DGKR-ILTGYDDGTIIVW--NPKTGQ 223 (399)
T ss_pred C-----CCce-EEEEecCceEEEE--ecCCCc
Confidence 2 2443 8999999999877 566663
|
|
| >KOG1332|consensus | Back alignment and domain information |
|---|
Probab=83.14 E-value=19 Score=32.97 Aligned_cols=64 Identities=16% Similarity=0.230 Sum_probs=42.5
Q ss_pred EEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCC
Q psy14552 127 IVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQ 196 (290)
Q Consensus 127 l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~ 196 (290)
++=+..|+.+++..-.. +...+.-+......++-+++..|-+ +...|++|..||.|.++..+.+
T Consensus 73 LAScsYDgkVIiWke~~--g~w~k~~e~~~h~~SVNsV~waphe----ygl~LacasSDG~vsvl~~~~~ 136 (299)
T KOG1332|consen 73 LASCSYDGKVIIWKEEN--GRWTKAYEHAAHSASVNSVAWAPHE----YGLLLACASSDGKVSVLTYDSS 136 (299)
T ss_pred eeEeecCceEEEEecCC--Cchhhhhhhhhhcccceeecccccc----cceEEEEeeCCCcEEEEEEcCC
Confidence 44333488888775432 4443332222356677777776543 6789999999999999998765
|
|
| >KOG0299|consensus | Back alignment and domain information |
|---|
Probab=83.03 E-value=17 Score=35.81 Aligned_cols=145 Identities=14% Similarity=0.171 Sum_probs=76.6
Q ss_pred EEEEeec-CceEEEEeeCCeEEEEEecCCCceec-CCCceEEEE-E--eCCCEEEEEEeCCeEEEEEEcCCCCCceeeee
Q psy14552 79 IVRCAVN-QRQIVIALQGGRLIYFEMHPVSDKKE-SDKKKIVRC-A--VNQRQIVIALQGGRLIYFEMHPETGILDECSE 153 (290)
Q Consensus 79 Iv~as~n-~~qv~ial~~g~i~~~~~~~~~~~~~-~~~~~Ii~a-s--~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~ 153 (290)
+..|-.+ ..|++..=.+..++.+.++...-... +.++..|.+ + .+.+++..++.|.++.+.++++. . ..+.+
T Consensus 206 l~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~-s-~vetl- 282 (479)
T KOG0299|consen 206 LTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL-S-YVETL- 282 (479)
T ss_pred EEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh-H-HHHHH-
Confidence 4444444 44444333333444554432211111 234444444 2 45566888878999999988862 1 11211
Q ss_pred eeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCC
Q psy14552 154 TIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGP 233 (290)
Q Consensus 154 ~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~ 233 (290)
.--+..|.-++.. + +...+.||--|.++++|++++++.|.-. ....-+..+++++
T Consensus 283 -yGHqd~v~~IdaL--~----reR~vtVGgrDrT~rlwKi~eesqlifr---g~~~sidcv~~In--------------- 337 (479)
T KOG0299|consen 283 -YGHQDGVLGIDAL--S----RERCVTVGGRDRTVRLWKIPEESQLIFR---GGEGSIDCVAFIN--------------- 337 (479)
T ss_pred -hCCccceeeechh--c----ccceEEeccccceeEEEeccccceeeee---CCCCCeeeEEEec---------------
Confidence 1234455444433 2 4678889989999999999654333222 1123455555553
Q ss_pred ccCCceEEEEEecCceEEEEEE
Q psy14552 234 VTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 234 ~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
...+..|-.||.+.=+.+
T Consensus 338 ----~~HfvsGSdnG~IaLWs~ 355 (479)
T KOG0299|consen 338 ----DEHFVSGSDNGSIALWSL 355 (479)
T ss_pred ----ccceeeccCCceEEEeee
Confidence 223566777777665544
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=83.00 E-value=4.3 Score=24.75 Aligned_cols=30 Identities=33% Similarity=0.460 Sum_probs=24.5
Q ss_pred cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEE
Q psy14552 157 MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLIS 192 (290)
Q Consensus 157 l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~ 192 (290)
-...|.++++.+. ..+++.|..|+.+.+|+
T Consensus 10 h~~~i~~i~~~~~------~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 10 HSSSINSIAWSPD------GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SSSSEEEEEEETT------SSEEEEEETTSEEEEEE
T ss_pred CCCcEEEEEEecc------cccceeeCCCCEEEEEC
Confidence 3567888988753 57999999999999985
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=82.87 E-value=25 Score=35.31 Aligned_cols=116 Identities=14% Similarity=0.214 Sum_probs=63.2
Q ss_pred cCCCCCceEEEE--eecCceEEEEeeCCeEEEEEecCCCceec--------------CCCceEEEE-E---eCCCEEEEE
Q psy14552 71 KKESDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPVSDKKE--------------SDKKKIVRC-A---VNQRQIVIA 130 (290)
Q Consensus 71 ~~~~~~~~Iv~a--s~n~~qv~ial~~g~i~~~~~~~~~~~~~--------------~~~~~Ii~a-s---~~~~~l~Va 130 (290)
+.|-++-.|.+. +.+..|++++..+.+...|.-+ ..+|.+ ..++..++| + .+..+++-+
T Consensus 209 l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRd-G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~ 287 (641)
T KOG0772|consen 209 LQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRD-GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTC 287 (641)
T ss_pred cCcccccccceeeecCCCCeEEEEecCcceeEEccC-CceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEe
Confidence 334444444443 4557788877777666655321 123322 122222444 2 233445555
Q ss_pred EeCCeEEEEEEcCCCCCceeeeeeee---cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeC
Q psy14552 131 LQGGRLIYFEMHPETGILDECSETIQ---MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLA 194 (290)
Q Consensus 131 l~~~~i~~l~l~~~~~~l~~~~~~~~---l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~ 194 (290)
..|+++++..++....++ ++.++.. ..-.++..++.+. .+.++.|+.||+|.+|...
T Consensus 288 s~DgtlRiWdv~~~k~q~-qVik~k~~~g~Rv~~tsC~~nrd------g~~iAagc~DGSIQ~W~~~ 347 (641)
T KOG0772|consen 288 SYDGTLRIWDVNNTKSQL-QVIKTKPAGGKRVPVTSCAWNRD------GKLIAAGCLDGSIQIWDKG 347 (641)
T ss_pred cCCCcEEEEecCCchhhe-eEEeeccCCCcccCceeeecCCC------cchhhhcccCCceeeeecC
Confidence 569999999988621233 2233332 1223444445432 3569999999999999863
|
|
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=82.85 E-value=68 Score=35.61 Aligned_cols=120 Identities=12% Similarity=0.029 Sum_probs=69.0
Q ss_pred EEEEeCCCEEEEEEeCCeEEEEEEcCCCC-Cce-eeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCC
Q psy14552 118 VRCAVNQRQIVIALQGGRLIYFEMHPETG-ILD-ECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAP 195 (290)
Q Consensus 118 i~as~~~~~l~Val~~~~i~~l~l~~~~~-~l~-~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~ 195 (290)
++...++.++|||..||.|+++.++.... ... ..........+-..+++...... .++..|+.++..+.++.|..-.
T Consensus 1104 vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~-~~S~~lvy~T~~~~iv~~D~r~ 1182 (1431)
T KOG1240|consen 1104 VTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAI-VQSHVLVYATDLSRIVSWDTRM 1182 (1431)
T ss_pred EEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeeccccc-ccceeEEEEEeccceEEecchh
Confidence 44456788899999999999999986111 110 00111223344445555544322 2346888888878778776542
Q ss_pred CCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEe
Q psy14552 196 QDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 196 ~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d 256 (290)
...+-..+-+.-.....|+++-. ....+.+|+..|.++=+.+.
T Consensus 1183 ~~~~w~lk~~~~hG~vTSi~idp------------------~~~WlviGts~G~l~lWDLR 1225 (1431)
T KOG1240|consen 1183 RHDAWRLKNQLRHGLVTSIVIDP------------------WCNWLVIGTSRGQLVLWDLR 1225 (1431)
T ss_pred hhhHHhhhcCccccceeEEEecC------------------CceEEEEecCCceEEEEEee
Confidence 22222221111113456666553 34479999999999876653
|
|
| >KOG1645|consensus | Back alignment and domain information |
|---|
Probab=82.74 E-value=5.1 Score=38.81 Aligned_cols=65 Identities=22% Similarity=0.182 Sum_probs=48.0
Q ss_pred EEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeC
Q psy14552 178 FLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQ 257 (290)
Q Consensus 178 ~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~ 257 (290)
.+..+.-+..+-++++.. -..+.....+..+-|.+... +...++|+|+.||.++-|.+..
T Consensus 208 Ll~~asl~nkiki~dlet---~~~vssy~a~~~~wSC~wDl-----------------de~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 208 LLGLASLGNKIKIMDLET---SCVVSSYIAYNQIWSCCWDL-----------------DERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred eeeeeccCceEEEEeccc---ceeeeheeccCCceeeeecc-----------------CCcceeEEeccCceEEEEEccC
Confidence 566666688888888863 34444556677788887764 3467899999999999999976
Q ss_pred CCCcc
Q psy14552 258 TSGDL 262 (290)
Q Consensus 258 ~~~~l 262 (290)
.++.+
T Consensus 268 ~~~~~ 272 (463)
T KOG1645|consen 268 PEGPL 272 (463)
T ss_pred CCchH
Confidence 66643
|
|
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=82.39 E-value=4.7 Score=38.61 Aligned_cols=63 Identities=22% Similarity=0.351 Sum_probs=40.8
Q ss_pred EEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCC
Q psy14552 126 QIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQD 197 (290)
Q Consensus 126 ~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~ 197 (290)
.++-|..|.+|++|..+. +.--++--+.-|. .+.|+.... .+.|++.|..||.|+.|+-...+
T Consensus 286 EfvsgsyDksIRIf~~~~--~~SRdiYhtkRMq-~V~~Vk~S~------Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 286 EFVSGSYDKSIRIFPVNH--GHSRDIYHTKRMQ-HVFCVKYSM------DSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred hhccccccceEEEeecCC--CcchhhhhHhhhh-eeeEEEEec------cccEEEecCCCcceeeeecchhh
Confidence 366666688899988775 2111211111232 477777763 37899999999999999876443
|
|
| >KOG0306|consensus | Back alignment and domain information |
|---|
Probab=82.21 E-value=71 Score=33.65 Aligned_cols=114 Identities=20% Similarity=0.271 Sum_probs=70.1
Q ss_pred eCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCC-C-ce
Q psy14552 122 VNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQ-D-CL 199 (290)
Q Consensus 122 ~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~-~-~l 199 (290)
.+..++++|..+|.+.+|++.. ..+.|.. ..-+..|=.+++.+. ...++-|..|.+|..|.+.-. + .=
T Consensus 422 pgd~~Iv~G~k~Gel~vfdlaS--~~l~Eti--~AHdgaIWsi~~~pD------~~g~vT~saDktVkfWdf~l~~~~~g 491 (888)
T KOG0306|consen 422 PGDRYIVLGTKNGELQVFDLAS--ASLVETI--RAHDGAIWSISLSPD------NKGFVTGSADKTVKFWDFKLVVSVPG 491 (888)
T ss_pred CCCceEEEeccCCceEEEEeeh--hhhhhhh--hccccceeeeeecCC------CCceEEecCCcEEEEEeEEEEeccCc
Confidence 4566799999999999999875 2333321 122344545555433 456778888999999986410 0 00
Q ss_pred eEeeEEecC-----CcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeCCCC
Q psy14552 200 KQKNLQGLP-----DLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSG 260 (290)
Q Consensus 200 ~~~~~~~L~-----~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~~~~ 260 (290)
+..+...|- .++..++.+..- ...-||-+||=|-.+--|-+|....
T Consensus 492 t~~k~lsl~~~rtLel~ddvL~v~~S---------------pdgk~LaVsLLdnTVkVyflDtlKF 542 (888)
T KOG0306|consen 492 TQKKVLSLKHTRTLELEDDVLCVSVS---------------PDGKLLAVSLLDNTVKVYFLDTLKF 542 (888)
T ss_pred ccceeeeeccceEEeccccEEEEEEc---------------CCCcEEEEEeccCeEEEEEecceee
Confidence 011111111 256667777652 2245799999999999998887544
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=81.87 E-value=35 Score=29.85 Aligned_cols=121 Identities=12% Similarity=0.141 Sum_probs=63.1
Q ss_pred EeCCCEEEEEEe-CCeEEEEEEcCCCCCceeeeeeeec------Cc--ceeEEEeeeCCCCCccccEEEEEeC-CCeEEE
Q psy14552 121 AVNQRQIVIALQ-GGRLIYFEMHPETGILDECSETIQM------ES--EVLCMALSNAPSGEQMSRFLAVGLA-DNTVRL 190 (290)
Q Consensus 121 s~~~~~l~Val~-~~~i~~l~l~~~~~~l~~~~~~~~l------~~--ei~~l~i~~~~~~~~~~~~l~VGl~-dg~v~i 190 (290)
+.++..++++.. ++.++++.+.. +.. ...+.. +. .+..+.+.+ ...+++++.. ++.+.+
T Consensus 165 s~dg~~l~~~~~~~~~v~i~d~~~--~~~---~~~~~~~~~~~~~~~~~~~~i~~s~------dg~~~~~~~~~~~~i~v 233 (300)
T TIGR03866 165 TADGKELWVSSEIGGTVSVIDVAT--RKV---IKKITFEIPGVHPEAVQPVGIKLTK------DGKTAFVALGPANRVAV 233 (300)
T ss_pred CCCCCEEEEEcCCCCEEEEEEcCc--cee---eeeeeecccccccccCCccceEECC------CCCEEEEEcCCCCeEEE
Confidence 455566666653 78888887764 221 111111 01 122333432 1345666654 677888
Q ss_pred EEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEec-CceEEEEEEeCCCCcccccceEE
Q psy14552 191 ISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQ-NGALLRMVVDQTSGDLSDNRMRY 269 (290)
Q Consensus 191 ~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~-dG~l~~~~~d~~~~~l~~~~~~~ 269 (290)
|.+... +..+....+..|.++.... .+ .+|+++-+ +|.+..|.+ .+++.. +...
T Consensus 234 ~d~~~~---~~~~~~~~~~~~~~~~~~~-----------------~g-~~l~~~~~~~~~i~v~d~--~~~~~~--~~~~ 288 (300)
T TIGR03866 234 VDAKTY---EVLDYLLVGQRVWQLAFTP-----------------DE-KYLLTTNGVSNDVSVIDV--AALKVI--KSIK 288 (300)
T ss_pred EECCCC---cEEEEEEeCCCcceEEECC-----------------CC-CEEEEEcCCCCeEEEEEC--CCCcEE--EEEE
Confidence 887532 2222223344566554331 22 35888754 899887755 445432 3456
Q ss_pred ecCcceEE
Q psy14552 270 LGSRPVKL 277 (290)
Q Consensus 270 lG~~pv~l 277 (290)
+|..|=.+
T Consensus 289 ~~~~~~~~ 296 (300)
T TIGR03866 289 VGRLPWGV 296 (300)
T ss_pred ccccccee
Confidence 77776433
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0278|consensus | Back alignment and domain information |
|---|
Probab=81.81 E-value=21 Score=32.89 Aligned_cols=137 Identities=15% Similarity=0.222 Sum_probs=74.7
Q ss_pred CCCeEEEEe-cCCeEEEeec--CcceeeeccCCCCCceEEEEeec-CceEEEEeeCCeEEEEEecCCCc---eecCCCce
Q psy14552 44 GDNSIVQVY-PDGIRHIGAK--NTTWKVSDKKESDKKKIVRCAVN-QRQIVIALQGGRLIYFEMHPVSD---KKESDKKK 116 (290)
Q Consensus 44 ~~~~ivQVt-~~~v~l~~~~--~~~~~~~~~~~~~~~~Iv~as~n-~~qv~ial~~g~i~~~~~~~~~~---~~~~~~~~ 116 (290)
.|..|+--+ ...|||-|.. +...++.. ..++.++-.. +..++...-++.|.|.+.+...- ...|..
T Consensus 154 eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-----~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~n-- 226 (334)
T KOG0278|consen 154 EDKCILSSADDKTVRLWDHRTGTEVQSLEF-----NSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCN-- 226 (334)
T ss_pred cCceEEeeccCCceEEEEeccCcEEEEEec-----CCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccc--
Confidence 345566533 5568876643 22222221 2233344333 44444444677788777654332 233443
Q ss_pred EEEEEe--CCCEEEEEEeCCeEEEEEEcCCCCCceeeee-eeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEe
Q psy14552 117 IVRCAV--NQRQIVIALQGGRLIYFEMHPETGILDECSE-TIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISL 193 (290)
Q Consensus 117 Ii~as~--~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~-~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l 193 (290)
+.+|+- +....+.|-.|..++-|..+. +. ++-. ...-+.-|-|+.+.|. -...+.|..||+|++|..
T Consensus 227 V~SASL~P~k~~fVaGged~~~~kfDy~T--ge--Ei~~~nkgh~gpVhcVrFSPd------GE~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 227 VESASLHPKKEFFVAGGEDFKVYKFDYNT--GE--EIGSYNKGHFGPVHCVRFSPD------GELYASGSEDGTIRLWQT 296 (334)
T ss_pred cccccccCCCceEEecCcceEEEEEeccC--Cc--eeeecccCCCCceEEEEECCC------CceeeccCCCceEEEEEe
Confidence 445543 333344443456666665553 32 3211 1235678999999864 356779999999999998
Q ss_pred CCCC
Q psy14552 194 APQD 197 (290)
Q Consensus 194 ~~~~ 197 (290)
.+..
T Consensus 297 ~~~~ 300 (334)
T KOG0278|consen 297 TPGK 300 (334)
T ss_pred cCCC
Confidence 7643
|
|
| >KOG2321|consensus | Back alignment and domain information |
|---|
Probab=80.92 E-value=12 Score=37.85 Aligned_cols=103 Identities=11% Similarity=0.263 Sum_probs=60.7
Q ss_pred ceEEEEeeCCeEEEEEecCCCceecCCCce---EEEEEeCCCE--EEEEEeCCeEEEEEEcCCC--CCceeeeeee-ecC
Q psy14552 87 RQIVIALQGGRLIYFEMHPVSDKKESDKKK---IVRCAVNQRQ--IVIALQGGRLIYFEMHPET--GILDECSETI-QME 158 (290)
Q Consensus 87 ~qv~ial~~g~i~~~~~~~~~~~~~~~~~~---Ii~as~~~~~--l~Val~~~~i~~l~l~~~~--~~l~~~~~~~-~l~ 158 (290)
+-+.++-++.+|+=|.++ -+.|..|-... +-+|+.|... +++|..++.+.++.....+ +.| +...++ +.|
T Consensus 146 cDly~~gsg~evYRlNLE-qGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l-~~~~~v~s~p 223 (703)
T KOG2321|consen 146 CDLYLVGSGSEVYRLNLE-QGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTL-DAASSVNSHP 223 (703)
T ss_pred ccEEEeecCcceEEEEcc-ccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheee-ecccccCCCc
Confidence 345566677788777775 45666553322 4555666433 6777668888776433210 111 100011 123
Q ss_pred c-----ceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCC
Q psy14552 159 S-----EVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQD 197 (290)
Q Consensus 159 ~-----ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~ 197 (290)
. +|+.++|.+. ...++||+.+|.+++|.|-...
T Consensus 224 g~~~~~svTal~F~d~------gL~~aVGts~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 224 GGDAAPSVTALKFRDD------GLHVAVGTSTGSVLIYDLRASK 261 (703)
T ss_pred cccccCcceEEEecCC------ceeEEeeccCCcEEEEEcccCC
Confidence 3 3888888632 5789999999999999986443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 290 | ||||
| 3ei1_A | 1158 | Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4 Pho | 1e-10 | ||
| 3e0c_A | 1140 | Crystal Structure Of Dna Damage-Binding Protein 1(D | 1e-10 | ||
| 4e54_A | 1150 | Damaged Dna Induced Uv-Damaged Dna-Binding Protein | 1e-10 | ||
| 4a0a_A | 1159 | Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Dup | 2e-10 | ||
| 4a08_A | 1159 | Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Dup | 2e-10 | ||
| 4a0l_A | 1144 | Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp | 2e-10 | ||
| 4a0b_A | 1159 | Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Dup | 2e-10 | ||
| 4a11_A | 1159 | Structure Of The Hsddb1-Hscsa Complex Length = 1159 | 2e-10 | ||
| 2b5n_A | 323 | Crystal Structure Of The Ddb1 Bpb Domain Length = 3 | 5e-10 | ||
| 3i7h_A | 1143 | Crystal Structure Of Ddb1 In Complex With The H-Box | 5e-10 | ||
| 3ei4_A | 1158 | Structure Of The Hsddb1-Hsddb2 Complex Length = 115 | 6e-10 | ||
| 2b5l_A | 1140 | Crystal Structure Of Ddb1 In Complex With Simian Vi | 6e-10 |
| >pdb|3EI1|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4 Photoproduct Containing Dna-Duplex Length = 1158 | Back alignment and structure |
|
| >pdb|3E0C|A Chain A, Crystal Structure Of Dna Damage-Binding Protein 1(Ddb1) Length = 1140 | Back alignment and structure |
|
| >pdb|4E54|A Chain A, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 1150 | Back alignment and structure |
|
| >pdb|4A0A|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex ( Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3) Length = 1159 | Back alignment and structure |
|
| >pdb|4A08|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex ( Purine At D-1 Position) At 3.0 A Resolution (Cpd 1) Length = 1159 | Back alignment and structure |
|
| >pdb|4A0L|A Chain A, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 1144 | Back alignment and structure |
|
| >pdb|4A0B|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex ( Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4) Length = 1159 | Back alignment and structure |
|
| >pdb|4A11|A Chain A, Structure Of The Hsddb1-Hscsa Complex Length = 1159 | Back alignment and structure |
|
| >pdb|2B5N|A Chain A, Crystal Structure Of The Ddb1 Bpb Domain Length = 323 | Back alignment and structure |
|
| >pdb|3I7H|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of Hbx Length = 1143 | Back alignment and structure |
|
| >pdb|3EI4|A Chain A, Structure Of The Hsddb1-Hsddb2 Complex Length = 1158 | Back alignment and structure |
|
| >pdb|2B5L|A Chain A, Crystal Structure Of Ddb1 In Complex With Simian Virus 5 V Protein Length = 1140 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 290 | |||
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 7e-35 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-05 |
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... Length = 1158 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 7e-35
Identities = 67/289 (23%), Positives = 106/289 (36%), Gaps = 62/289 (21%)
Query: 1 EFDAYIVVSFSNATLVLSI-GETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHI 59
E D +V+SF T VL + GE VEE GF T C + ++Q+ +R +
Sbjct: 438 ETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLV 497
Query: 60 GAKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVR 119
+ VS+ KE K I + N Q+V+A+
Sbjct: 498 SQEPKA-LVSEWKEPQAKNISVASCNSSQVVVAV-------------------------- 530
Query: 120 CAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFL 179
G L Y ++HP+ +ME EV C+ ++ +S
Sbjct: 531 -------------GRALYYLQIHPQE---LRQISHTEMEHEVACLDITPLGDSNGLSPLC 574
Query: 180 AVGL-ADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGN 238
A+GL D + R++ L P L K + G + S++M +
Sbjct: 575 AIGLWTDISARILKL-PSFELLHKEMLGGEIIPRSILMTTFE----------------SS 617
Query: 239 LYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGNEA 287
YL L +GAL ++ +G LSD + LG++P L R
Sbjct: 618 HYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTN 666
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 3e-05
Identities = 45/297 (15%), Positives = 90/297 (30%), Gaps = 75/297 (25%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGS-----GFYGTTPTLCCSAMGDNSIVQVYPDG 55
FD V + +LS E ++ + S G TL +VQ + +
Sbjct: 32 NFDCKDVQDMPKS--ILSKEE-IDHIIMSKDAVSGTLRLFWTLLSK---QEEMVQKFVEE 85
Query: 56 IRHIGAKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKK 115
+ N + +S K ++ +Y E D+ +D +
Sbjct: 86 VL---RINYKFLMSPIKTEQRQP---------------SMMTRMYIEQR---DRLYNDNQ 124
Query: 116 KIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQ-M----ESEVLCMALSNAP 170
+ V++ Q + L+ L E+ P + I + ++ +AL
Sbjct: 125 VFAKYNVSRLQPYLKLRQA-L--LELRPAKNV------LIDGVLGSGKT---WVALDVCL 172
Query: 171 SGEQMSRFLAVGLADNTVRLISLA----PQDCLKQKNLQGLPDLAESLVMIEMGASDPTS 226
S + + D + ++L P+ L+ LQ L + S
Sbjct: 173 SYKVQCKM------DFKIFWLNLKNCNSPETVLEM--LQKLLYQIDPNWTSRSDHSSNIK 224
Query: 227 SDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQ 283
+ L L +N LL V+ ++ + + F + C+
Sbjct: 225 LRIHSIQAELRRLLKSKPYEN-CLL--VLL----NVQNAKA-------WNAFNLSCK 267
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 290 | |||
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 100.0 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 99.2 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 97.88 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 97.6 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 97.55 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 97.53 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 97.51 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 97.38 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 97.26 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 97.24 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 97.24 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 97.2 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 97.19 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 97.18 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 97.09 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 97.05 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 97.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 96.97 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 96.96 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 96.95 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 96.94 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 96.93 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 96.89 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 96.86 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 96.82 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 96.8 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 96.79 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 96.79 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 96.79 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 96.78 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 96.75 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 96.75 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 96.71 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 96.7 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 96.66 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 96.63 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 96.63 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 96.62 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 96.59 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 96.55 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 96.5 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.49 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 96.49 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 96.44 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 96.43 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 96.41 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 96.34 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 96.31 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 96.31 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 96.25 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 96.24 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 96.24 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 96.23 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 96.22 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 96.21 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 96.2 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 96.16 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 96.15 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 96.15 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 96.09 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.09 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 96.09 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 96.06 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 95.99 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 95.96 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 95.93 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 95.9 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 95.89 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 95.86 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 95.82 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 95.8 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 95.76 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 95.7 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 95.7 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 95.66 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 95.65 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 95.58 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 95.52 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 95.49 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 95.48 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 95.43 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 95.43 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 95.25 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 95.25 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 95.25 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 95.24 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 95.18 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 95.12 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 95.12 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 95.11 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 95.07 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 95.02 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 94.92 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 94.91 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 94.88 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 94.87 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 94.87 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 94.85 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 94.78 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 94.76 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 94.68 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 94.65 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 94.63 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 94.5 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 94.48 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 94.47 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 94.26 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 94.05 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 94.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 93.96 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 93.87 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 93.84 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 93.43 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 93.41 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 93.35 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 93.33 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 93.32 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 93.24 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 92.35 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 92.03 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 91.97 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 91.51 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 91.46 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 91.41 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 91.35 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 91.21 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 91.11 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 90.62 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 88.92 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 88.41 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 88.0 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 87.46 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 87.45 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 86.67 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 85.21 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 85.02 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 84.8 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 84.44 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 84.35 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 84.17 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 83.63 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 83.13 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 82.96 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 80.42 |
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-36 Score=317.28 Aligned_cols=227 Identities=29% Similarity=0.464 Sum_probs=186.6
Q ss_pred CcceEEEEEcCCceEEEEe-CCEEEEeecCCccCCCCeEEEEeeCCCeEEEEecCCeEEEeecCcceeeeccCCCCCceE
Q psy14552 1 EFDAYIVVSFSNATLVLSI-GETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIGAKNTTWKVSDKKESDKKKI 79 (290)
Q Consensus 1 ~~~~ylvlS~~~~T~vl~~-~~~~~e~~~~gf~~~~~Ti~~~~~~~~~ivQVt~~~v~l~~~~~~~~~~~~~~~~~~~~I 79 (290)
++|.|||+|++++|+||++ +++++|++++||.++++||+|++++++.+||||+++||+++.+... .+++.+||.+++|
T Consensus 438 ~~~~yLvlS~~~~T~Vl~i~~e~veev~~~gf~~~~~TL~~~~l~~~~ivQVt~~~Irli~~~~~~-~~~~w~~p~~~~I 516 (1158)
T 3ei3_A 438 ETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKA-LVSEWKEPQAKNI 516 (1158)
T ss_dssp SSCCEEEEEETTEEEEEEEETTEEEEECCTTCCSSSCEEEEEEETTTEEEEEESSCEEEEESSSCC-EEEEECCTTCCCC
T ss_pred CCCCEEEEECCCCeEEEEEeCCcccccccccccCCCCcEEEEEcCCCeEEEEecCEEEEEECCCCe-EEEEEECCCCCEE
Confidence 3789999999999999999 8999999999999999999999999999999999999999865321 1223334455555
Q ss_pred EEEeecCceEEEEeeCCeEEEEEecCCCceecCCCceEEEEEeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCc
Q psy14552 80 VRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMES 159 (290)
Q Consensus 80 v~as~n~~qv~ial~~g~i~~~~~~~~~~~~~~~~~~Ii~as~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ 159 (290)
++|++|++|+++| .+++++|| ++++ ++|.+. ++.+++.
T Consensus 517 ~~As~n~~~vvva-~g~~l~~f--------------------------------------el~~--~~L~~~-~~~~l~~ 554 (1158)
T 3ei3_A 517 SVASCNSSQVVVA-VGRALYYL--------------------------------------QIHP--QELRQI-SHTEMEH 554 (1158)
T ss_dssp CEEEECSSEEEEE-ETTEEEEE--------------------------------------EEET--TEEEEE-EEEECSS
T ss_pred EEEEeCCCEEEEE-ECCEEEEE--------------------------------------EeeC--Cceeee-cccCCCC
Confidence 5555555555555 24455544 4443 234443 4567899
Q ss_pred ceeEEEeeeCCCCCccccEEEEEeC-CCeEEEEEeCCCCceeEeeEEecCC--cceEEEEEEecCCCCCCCCCCCCCccC
Q psy14552 160 EVLCMALSNAPSGEQMSRFLAVGLA-DNTVRLISLAPQDCLKQKNLQGLPD--LAESLVMIEMGASDPTSSDEPAGPVTL 236 (290)
Q Consensus 160 ei~~l~i~~~~~~~~~~~~l~VGl~-dg~v~i~~l~~~~~l~~~~~~~L~~--~p~Sl~~~~~~~~~~~~~~~~~~~~~~ 236 (290)
||+|+++.+.++++.++.+++||+| |+++++|+|+ .++.+..+.|+. .|+|+++++| +
T Consensus 555 evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~---~l~~~~~~~L~~~~~p~si~l~~~----------------~ 615 (1158)
T 3ei3_A 555 EVACLDITPLGDSNGLSPLCAIGLWTDISARILKLP---SFELLHKEMLGGEIIPRSILMTTF----------------E 615 (1158)
T ss_dssp CEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETT---TCCEEEEEECCSSCCEEEEEEEEE----------------T
T ss_pred ceEEEEeecCCCCcccccEEEEEECCCCEEEEEECC---CCCeEEEEECCCCCCCcEEEEEEe----------------C
Confidence 9999999887666678999999999 9999999997 588888899975 8999999987 3
Q ss_pred CceEEEEEecCceEEEEEEeCCCCcccccceEEecCcceEEEEEEeCCceeec
Q psy14552 237 GNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGNEANY 289 (290)
Q Consensus 237 ~~~~L~iGl~dG~l~~~~~d~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~~~ 289 (290)
+.+||+|||+||.|++|.+|..+|+|+++|+++||++|++|++++..|+.+||
T Consensus 616 ~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~ 668 (1158)
T 3ei3_A 616 SSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVF 668 (1158)
T ss_dssp TEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEE
T ss_pred CCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEE
Confidence 56899999999999999999999999999999999999999999999888876
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=99.20 E-value=6.9e-10 Score=118.43 Aligned_cols=122 Identities=12% Similarity=0.165 Sum_probs=80.7
Q ss_pred ceEEEEeecCceEEE-EeeCCeEEEEEecCCCceecCCCceEEEEEeC--------CCEEEEEEe-CCeEEEEEEcCCCC
Q psy14552 77 KKIVRCAVNQRQIVI-ALQGGRLIYFEMHPVSDKKESDKKKIVRCAVN--------QRQIVIALQ-GGRLIYFEMHPETG 146 (290)
Q Consensus 77 ~~Iv~as~n~~qv~i-al~~g~i~~~~~~~~~~~~~~~~~~Ii~as~~--------~~~l~Val~-~~~i~~l~l~~~~~ 146 (290)
..|+.|+ +.+++. -+.+|++...+ .+..+. ++.+.+.. ...++||+| |+++++++++.
T Consensus 524 ~~vvva~--g~~l~~fel~~~~L~~~~-----~~~l~~--evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~--- 591 (1158)
T 3ei3_A 524 SQVVVAV--GRALYYLQIHPQELRQIS-----HTEMEH--EVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS--- 591 (1158)
T ss_dssp SEEEEEE--TTEEEEEEEETTEEEEEE-----EEECSS--CEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT---
T ss_pred CEEEEEE--CCEEEEEEeeCCceeeec-----ccCCCC--ceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC---
Confidence 4566664 345544 45667654321 222222 34333532 245999999 99999999975
Q ss_pred Cceeee-eee---ecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCC-CceeEeeEEecCCcceEEEEEE
Q psy14552 147 ILDECS-ETI---QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQ-DCLKQKNLQGLPDLAESLVMIE 218 (290)
Q Consensus 147 ~l~~~~-~~~---~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~-~~l~~~~~~~L~~~p~Sl~~~~ 218 (290)
++.+. +.+ ..|+++.++.+. +..||++|+.||.+.++.+++. +.|.+.++..||+.|..|..+.
T Consensus 592 -l~~~~~~~L~~~~~p~si~l~~~~-------~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~ 660 (1158)
T 3ei3_A 592 -FELLHKEMLGGEIIPRSILMTTFE-------SSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFR 660 (1158)
T ss_dssp -CCEEEEEECCSSCCEEEEEEEEET-------TEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEE
T ss_pred -CCeEEEEECCCCCCCcEEEEEEeC-------CCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEe
Confidence 32321 111 257777777662 3689999999999999999864 4688888889999998877665
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=97.88 E-value=0.011 Score=51.63 Aligned_cols=139 Identities=13% Similarity=0.148 Sum_probs=86.8
Q ss_pred EeCCCEEEEEE-eCCeEEEEEEcCCCCCceeeeeeee-cCc------ceeEEEeeeCCCCCccccEEEEEe-CCCeEEEE
Q psy14552 121 AVNQRQIVIAL-QGGRLIYFEMHPETGILDECSETIQ-MES------EVLCMALSNAPSGEQMSRFLAVGL-ADNTVRLI 191 (290)
Q Consensus 121 s~~~~~l~Val-~~~~i~~l~l~~~~~~l~~~~~~~~-l~~------ei~~l~i~~~~~~~~~~~~l~VGl-~dg~v~i~ 191 (290)
+.++..++++. .++.+.++.++..++.+... .... ++. .+..+++.+. ..+|+++. .++.+.+|
T Consensus 186 ~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~i~~s~d------g~~l~v~~~~~~~i~v~ 258 (343)
T 1ri6_A 186 HPNEQYAYCVNELNSSVDVWELKDPHGNIECV-QTLDMMPENFSDTRWAADIHITPD------GRHLYACDRTASLITVF 258 (343)
T ss_dssp CTTSSEEEEEETTTTEEEEEESSCTTSCCEEE-EEEECSCTTCCSCCCEEEEEECTT------SSEEEEEETTTTEEEEE
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCcEEEE-eeccccCccccccCCccceEECCC------CCEEEEEecCCCEEEEE
Confidence 55666676665 57889999887533444222 1221 222 4555666532 35677666 59999999
Q ss_pred EeCCC-CceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEe-cCceEEEEEEeCCCCcccccceEE
Q psy14552 192 SLAPQ-DCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGL-QNGALLRMVVDQTSGDLSDNRMRY 269 (290)
Q Consensus 192 ~l~~~-~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl-~dG~l~~~~~d~~~~~l~~~~~~~ 269 (290)
.++.. ..++.+.....+..|.++.+.. .+ .+|+++- .+|.+.-|.+|..++.+.......
T Consensus 259 d~~~~~~~~~~~~~~~~~~~~~~~~~s~-----------------dg-~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~ 320 (343)
T 1ri6_A 259 SVSEDGSVLSKEGFQPTETQPRGFNVDH-----------------SG-KYLIAAGQKSHHISVYEIVGEQGLLHEKGRYA 320 (343)
T ss_dssp EECTTSCCEEEEEEEECSSSCCCEEECT-----------------TS-SEEEEECTTTCEEEEEEEETTTTEEEEEEEEE
T ss_pred EEcCCCCceEEeeeecCCCccceEEECC-----------------CC-CEEEEecCCCCeEEEEEEcCCCceeeEccccc
Confidence 99742 2345544444444466665432 23 3578877 679999999999888776656677
Q ss_pred ecCcceEEEEEEeCC
Q psy14552 270 LGSRPVKLFKIRCQG 284 (290)
Q Consensus 270 lG~~pv~l~~~~~~~ 284 (290)
.|..|..+.-..-.+
T Consensus 321 ~g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 321 VGQGPMWVVVNAHEG 335 (343)
T ss_dssp CSSSCCEEEEEEEC-
T ss_pred cCCCCeeEEEEcccC
Confidence 888898885444433
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.043 Score=50.64 Aligned_cols=155 Identities=15% Similarity=0.217 Sum_probs=96.4
Q ss_pred CCceEEEEeecCceEEEEeeCCeEEEEEecCCCceec-CCCceEEEE-EeCCCEEEEEEeCCeEEEEEEcCCCCCceeee
Q psy14552 75 DKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKE-SDKKKIVRC-AVNQRQIVIALQGGRLIYFEMHPETGILDECS 152 (290)
Q Consensus 75 ~~~~Iv~as~n~~qv~ial~~g~i~~~~~~~~~~~~~-~~~~~Ii~a-s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~ 152 (290)
....|.+.+.++.+++.+..+|.|..+.+........ ..+...+.+ +.++..++.+..|+.|+++.+.. +.. .
T Consensus 278 ~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~---~ 352 (445)
T 2ovr_B 278 HTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKT--GQC---L 352 (445)
T ss_dssp CSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTT--CCE---E
T ss_pred CCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCC--CcE---E
Confidence 3456778888889999999999998887754322211 222222333 56667888888899999998865 321 1
Q ss_pred eeee----cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCC
Q psy14552 153 ETIQ----MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSD 228 (290)
Q Consensus 153 ~~~~----l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~ 228 (290)
.... -...|.++++. ..++++|..||.|.+|.+.....+..+....-+.....+.-+.+.
T Consensus 353 ~~~~~~~~~~~~v~~~~~~--------~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s-------- 416 (445)
T 2ovr_B 353 QTLQGPNKHQSAVTCLQFN--------KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRAS-------- 416 (445)
T ss_dssp EEECSTTSCSSCEEEEEEC--------SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEEC--------
T ss_pred EEEccCCCCCCCEEEEEEC--------CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEec--------
Confidence 2222 34567788773 368999999999999998754333333211111111222223321
Q ss_pred CCCCCccCCceEEEEEecCce----EEEEEEeC
Q psy14552 229 EPAGPVTLGNLYLYVGLQNGA----LLRMVVDQ 257 (290)
Q Consensus 229 ~~~~~~~~~~~~L~iGl~dG~----l~~~~~d~ 257 (290)
....+|.+|-.||. +.-+.++.
T Consensus 417 -------~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 417 -------NTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp -------SSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred -------CCEEEEEEcccCCCCccEEEEEECCC
Confidence 34567999999997 66666654
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.035 Score=48.14 Aligned_cols=148 Identities=8% Similarity=0.043 Sum_probs=91.4
Q ss_pred CceEEEEee--cCceEEEEeeCCeEEEEEecCCCceec-CCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCcee
Q psy14552 76 KKKIVRCAV--NQRQIVIALQGGRLIYFEMHPVSDKKE-SDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDE 150 (290)
Q Consensus 76 ~~~Iv~as~--n~~qv~ial~~g~i~~~~~~~~~~~~~-~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~ 150 (290)
...|...+. +..+++.+..+|.|..+.+........ .....+.+. +.++..++++..++.|+++.+.. +...
T Consensus 183 ~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~--~~~~- 259 (337)
T 1gxr_A 183 TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK--PDKY- 259 (337)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTS--SCEE-
T ss_pred cCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC--CCeE-
Confidence 344555555 456788888889988887653221111 111223222 45677788888899999998875 2221
Q ss_pred eeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCC
Q psy14552 151 CSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEP 230 (290)
Q Consensus 151 ~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~ 230 (290)
.....+..+.++.+.+. ..++++|..||.+.+|.++....+.. ......+.++...
T Consensus 260 --~~~~~~~~v~~~~~~~~------~~~l~~~~~dg~i~~~~~~~~~~~~~---~~~~~~v~~~~~s------------- 315 (337)
T 1gxr_A 260 --QLHLHESCVLSLKFAYC------GKWFVSTGKDNLLNAWRTPYGASIFQ---SKESSSVLSCDIS------------- 315 (337)
T ss_dssp --EECCCSSCEEEEEECTT------SSEEEEEETTSEEEEEETTTCCEEEE---EECSSCEEEEEEC-------------
T ss_pred --EEcCCccceeEEEECCC------CCEEEEecCCCcEEEEECCCCeEEEE---ecCCCcEEEEEEC-------------
Confidence 12234567888888642 46899999999999999875433211 1222333443332
Q ss_pred CCCccCCceEEEEEecCceEEEEEE
Q psy14552 231 AGPVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 231 ~~~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
....+|+.|..||.+.-|.+
T Consensus 316 -----~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 316 -----VDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp -----TTSCEEEEEETTSCEEEEEE
T ss_pred -----CCCCEEEEecCCCeEEEEEE
Confidence 12346899999999987765
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.036 Score=48.89 Aligned_cols=160 Identities=9% Similarity=0.072 Sum_probs=87.0
Q ss_pred CceEEEEeeCCeEEEEEecCCCceec----CCC-ceEEEEE--eC--CCEEEEEEeCCeEEEEEEcCCCCCceeeeeeee
Q psy14552 86 QRQIVIALQGGRLIYFEMHPVSDKKE----SDK-KKIVRCA--VN--QRQIVIALQGGRLIYFEMHPETGILDECSETIQ 156 (290)
Q Consensus 86 ~~qv~ial~~g~i~~~~~~~~~~~~~----~~~-~~Ii~as--~~--~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~ 156 (290)
.++++.+..+|.|..+.+... .+.. ..+ ..+.+.+ .. +..++.+..|+.|+++.+.. +..........
T Consensus 23 ~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~--~~~~~~~~~~~ 99 (379)
T 3jrp_A 23 GKRLATCSSDKTIKIFEVEGE-THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN--GRWSQIAVHAV 99 (379)
T ss_dssp SSEEEEEETTSCEEEEEEETT-EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEET--TEEEEEEEECC
T ss_pred CCEEEEEECCCcEEEEecCCC-cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCC--CceeEeeeecC
Confidence 456766767888877776521 1111 112 2233333 22 56788888899999999876 32212211112
Q ss_pred cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccC
Q psy14552 157 MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTL 236 (290)
Q Consensus 157 l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~ 236 (290)
....|.++++.+.. ...++++|..||.+.+|.+.......... +..-+..+..+.+...... .........
T Consensus 100 ~~~~v~~~~~~~~~----~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~--~~~~~~~~~ 170 (379)
T 3jrp_A 100 HSASVNSVQWAPHE----YGPLLLVASSDGKVSVVEFKENGTTSPII---IDAHAIGVNSASWAPATIE--EDGEHNGTK 170 (379)
T ss_dssp CSSCEEEEEECCGG----GCSEEEEEETTSEEEEEECCTTSCCCEEE---EECCTTCEEEEEECCCC------------C
T ss_pred CCcceEEEEeCCCC----CCCEEEEecCCCcEEEEecCCCCceeeEE---ecCCCCceEEEEEcCcccc--ccccccCCC
Confidence 46788899886431 14689999999999999987542222221 1111122222222110000 000000001
Q ss_pred CceEEEEEecCceEEEEEEeC
Q psy14552 237 GNLYLYVGLQNGALLRMVVDQ 257 (290)
Q Consensus 237 ~~~~L~iGl~dG~l~~~~~d~ 257 (290)
...+|+.|..||.+.-|.+..
T Consensus 171 ~~~~l~~~~~dg~i~i~d~~~ 191 (379)
T 3jrp_A 171 ESRKFVTGGADNLVKIWKYNS 191 (379)
T ss_dssp TTCEEEEEETTSCEEEEEEET
T ss_pred CCCEEEEEeCCCeEEEEEecC
Confidence 345699999999999888754
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.04 Score=47.76 Aligned_cols=148 Identities=10% Similarity=0.138 Sum_probs=90.8
Q ss_pred ceEEEEeec--CceEEEEeeCCeEEEEEecCCCceec-C-CCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCcee
Q psy14552 77 KKIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKE-S-DKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDE 150 (290)
Q Consensus 77 ~~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~-~-~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~ 150 (290)
..|...+.+ ..+++.+..+|.|..+.+........ . ....+.+. +.++..++.+..++.|+++.+.. +.
T Consensus 142 ~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~--~~--- 216 (337)
T 1gxr_A 142 PACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE--GR--- 216 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--TE---
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCC--Cc---
Confidence 345555543 56777787888888877653221111 1 12224332 44566788888899999998765 22
Q ss_pred eeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCC
Q psy14552 151 CSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEP 230 (290)
Q Consensus 151 ~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~ 230 (290)
.......+..+.++++.+. ..++++|..||.+.+|.+..... .....-...+.++...
T Consensus 217 ~~~~~~~~~~v~~~~~s~~------~~~l~~~~~~~~i~~~~~~~~~~---~~~~~~~~~v~~~~~~------------- 274 (337)
T 1gxr_A 217 QLQQHDFTSQIFSLGYCPT------GEWLAVGMESSNVEVLHVNKPDK---YQLHLHESCVLSLKFA------------- 274 (337)
T ss_dssp EEEEEECSSCEEEEEECTT------SSEEEEEETTSCEEEEETTSSCE---EEECCCSSCEEEEEEC-------------
T ss_pred eEeeecCCCceEEEEECCC------CCEEEEEcCCCcEEEEECCCCCe---EEEcCCccceeEEEEC-------------
Confidence 2234556788888888643 47899999999999999864321 1111111222333322
Q ss_pred CCCccCCceEEEEEecCceEEEEEEe
Q psy14552 231 AGPVTLGNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 231 ~~~~~~~~~~L~iGl~dG~l~~~~~d 256 (290)
....+|+.|-.||.+.-|.+.
T Consensus 275 -----~~~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 275 -----YCGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp -----TTSSEEEEEETTSEEEEEETT
T ss_pred -----CCCCEEEEecCCCcEEEEECC
Confidence 123368999999998888653
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.011 Score=52.02 Aligned_cols=153 Identities=9% Similarity=0.115 Sum_probs=90.7
Q ss_pred ceEEEEeec------CceEEEEeeCCeEEEEEecCCCceec------C-CCceEEEE--EeC----CCEEEEEEeCCeEE
Q psy14552 77 KKIVRCAVN------QRQIVIALQGGRLIYFEMHPVSDKKE------S-DKKKIVRC--AVN----QRQIVIALQGGRLI 137 (290)
Q Consensus 77 ~~Iv~as~n------~~qv~ial~~g~i~~~~~~~~~~~~~------~-~~~~Ii~a--s~~----~~~l~Val~~~~i~ 137 (290)
..|.+++.+ +.+++.+..+|.|..+.+.....+.. + ....+.++ +.+ +..++.|..|+.|+
T Consensus 19 ~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~ 98 (366)
T 3k26_A 19 QPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIR 98 (366)
T ss_dssp SCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEE
T ss_pred CceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEE
Confidence 456666665 45677777778877777653322111 1 11224333 333 33588888899999
Q ss_pred EEEEcCCCCCceeeeeeee-cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEE
Q psy14552 138 YFEMHPETGILDECSETIQ-MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVM 216 (290)
Q Consensus 138 ~l~l~~~~~~l~~~~~~~~-l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~ 216 (290)
++.+.. +.. ..... -...|.++++.+. ...++++|..||.|.+|.+.....+... ..+..-...+.-
T Consensus 99 v~d~~~--~~~---~~~~~~~~~~i~~~~~~~~-----~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~v~~ 166 (366)
T 3k26_A 99 IINPIT--MQC---IKHYVGHGNAINELKFHPR-----DPNLLLSVSKDHALRLWNIQTDTLVAIF--GGVEGHRDEVLS 166 (366)
T ss_dssp EECTTT--CCE---EEEEESCCSCEEEEEECSS-----CTTEEEEEETTSCEEEEETTTTEEEEEE--CSTTSCSSCEEE
T ss_pred EEEchh--ceE---eeeecCCCCcEEEEEECCC-----CCCEEEEEeCCCeEEEEEeecCeEEEEe--cccccccCceeE
Confidence 998764 322 12232 5678999998753 2568999999999999998643222221 111222222333
Q ss_pred EEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEe
Q psy14552 217 IEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d 256 (290)
+.+. ....+|+.|-.||.+.-|.+.
T Consensus 167 ~~~~---------------~~~~~l~~~~~dg~i~i~d~~ 191 (366)
T 3k26_A 167 ADYD---------------LLGEKIMSCGMDHSLKLWRIN 191 (366)
T ss_dssp EEEC---------------TTSSEEEEEETTSCEEEEESC
T ss_pred EEEC---------------CCCCEEEEecCCCCEEEEECC
Confidence 3331 123368999999999988764
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=97.26 E-value=0.042 Score=48.52 Aligned_cols=147 Identities=10% Similarity=0.122 Sum_probs=86.9
Q ss_pred CceEEEEeeCCeEEEEEecCCC--ceec-C-CCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCc
Q psy14552 86 QRQIVIALQGGRLIYFEMHPVS--DKKE-S-DKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMES 159 (290)
Q Consensus 86 ~~qv~ial~~g~i~~~~~~~~~--~~~~-~-~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ 159 (290)
..+++.+..+|.|..+.++... .... . ....+.+. +.++..++.+..|+.|+++.+.. +.+...........
T Consensus 20 ~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~~ 97 (372)
T 1k8k_C 20 RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG--RTWKPTLVILRINR 97 (372)
T ss_dssp SSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET--TEEEEEEECCCCSS
T ss_pred CCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC--CeeeeeEEeecCCC
Confidence 4556666677888777665321 1111 1 12224333 45677788888899999998865 32222211123467
Q ss_pred ceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCce
Q psy14552 160 EVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNL 239 (290)
Q Consensus 160 ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (290)
.|.++++.+. ..++++|..||.+.+|.++.............+ -...+.-+.+. ....
T Consensus 98 ~v~~~~~~~~------~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~-~~~~i~~~~~~---------------~~~~ 155 (372)
T 1k8k_C 98 AARCVRWAPN------EKKFAVGSGSRVISICYFEQENDWWVCKHIKKP-IRSTVLSLDWH---------------PNSV 155 (372)
T ss_dssp CEEEEEECTT------SSEEEEEETTSSEEEEEEETTTTEEEEEEECTT-CCSCEEEEEEC---------------TTSS
T ss_pred ceeEEEECCC------CCEEEEEeCCCEEEEEEecCCCcceeeeeeecc-cCCCeeEEEEc---------------CCCC
Confidence 7889988642 478999999999999998754433222222111 12222223331 1234
Q ss_pred EEEEEecCceEEEEEEe
Q psy14552 240 YLYVGLQNGALLRMVVD 256 (290)
Q Consensus 240 ~L~iGl~dG~l~~~~~d 256 (290)
+|+.|..||.+.-|.+.
T Consensus 156 ~l~~~~~dg~i~~~d~~ 172 (372)
T 1k8k_C 156 LLAAGSCDFKCRIFSAY 172 (372)
T ss_dssp EEEEEETTSCEEEEECC
T ss_pred EEEEEcCCCCEEEEEcc
Confidence 68999999999888753
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=97.24 E-value=0.051 Score=48.69 Aligned_cols=117 Identities=10% Similarity=0.142 Sum_probs=72.9
Q ss_pred CceEEEEeecCceEEEEeeCCeEEEEEecCCC------ceec--CCCceEEEE--EeC----C---CEEEEEEeCCeEEE
Q psy14552 76 KKKIVRCAVNQRQIVIALQGGRLIYFEMHPVS------DKKE--SDKKKIVRC--AVN----Q---RQIVIALQGGRLIY 138 (290)
Q Consensus 76 ~~~Iv~as~n~~qv~ial~~g~i~~~~~~~~~------~~~~--~~~~~Ii~a--s~~----~---~~l~Val~~~~i~~ 138 (290)
...|.+++.+.++++.+..+|.|..+.+.... .... .....+.+. +.+ + ..++.+..|+.|++
T Consensus 16 ~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~i 95 (397)
T 1sq9_A 16 DADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLF 95 (397)
T ss_dssp SSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEE
T ss_pred hcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEE
Confidence 45677888888888888889999888876433 1111 112223222 344 5 56777778999999
Q ss_pred EEEcCCCCC-ceeeeeeee-c-----CcceeEEEeeeCCCCCccccE-EEEEeCCCeEEEEEeCC
Q psy14552 139 FEMHPETGI-LDECSETIQ-M-----ESEVLCMALSNAPSGEQMSRF-LAVGLADNTVRLISLAP 195 (290)
Q Consensus 139 l~l~~~~~~-l~~~~~~~~-l-----~~ei~~l~i~~~~~~~~~~~~-l~VGl~dg~v~i~~l~~ 195 (290)
+.+... .. ......... . ...|.++++.+... ....+ +++|..||.+.+|.+..
T Consensus 96 w~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 96 YRITRE-DETKKVIFEKLDLLDSDMKKHSFWALKWGASND--RLLSHRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp EEEEEC-TTTCCEEEEEECCSCTTGGGSCEEEEEEECCC------CEEEEEEETTSCEEEEEEES
T ss_pred EEccCC-cccccccceeecccccccCCCcEEEEEEeeccC--CCCceEEEEEeCCCcEEEEeCCc
Confidence 988752 11 000011222 2 37899999972210 02467 99999999999999875
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.091 Score=46.07 Aligned_cols=148 Identities=11% Similarity=0.089 Sum_probs=85.2
Q ss_pred eecCceEEEEeeCCeEEEEEecCCCceec-CCC-ceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecC
Q psy14552 83 AVNQRQIVIALQGGRLIYFEMHPVSDKKE-SDK-KKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQME 158 (290)
Q Consensus 83 s~n~~qv~ial~~g~i~~~~~~~~~~~~~-~~~-~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~ 158 (290)
+.+.++++.+-.+|.|....+........ ..+ ..+.+. +.++..++.|..|++|++..+... ..+.... ..-.
T Consensus 64 ~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~-~~~~~~~--~~h~ 140 (304)
T 2ynn_A 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN-WALEQTF--EGHE 140 (304)
T ss_dssp EGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGT-TEEEEEE--CCCC
T ss_pred eCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCC-cchhhhh--cccC
Confidence 33467788888888888777654322111 111 223222 455667888888999999988752 1221111 1234
Q ss_pred cceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCc
Q psy14552 159 SEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGN 238 (290)
Q Consensus 159 ~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~ 238 (290)
..|.++++.+.+ ..+++.|..||.|.+|.+.......... ......+..+.+... ...
T Consensus 141 ~~v~~v~~~p~~-----~~~l~sgs~D~~v~iwd~~~~~~~~~~~----~~~~~~v~~~~~~~~-------------~~~ 198 (304)
T 2ynn_A 141 HFVMCVAFNPKD-----PSTFASGCLDRTVKVWSLGQSTPNFTLT----TGQERGVNYVDYYPL-------------PDK 198 (304)
T ss_dssp SCEEEEEECTTC-----TTEEEEEETTSEEEEEETTCSSCSEEEE----CCCTTCEEEEEECCS-------------TTC
T ss_pred CcEEEEEECCCC-----CCEEEEEeCCCeEEEEECCCCCccceec----cCCcCcEEEEEEEEc-------------CCC
Confidence 668899887532 4689999999999999986432211111 111122222222111 233
Q ss_pred eEEEEEecCceEEEEEE
Q psy14552 239 LYLYVGLQNGALLRMVV 255 (290)
Q Consensus 239 ~~L~iGl~dG~l~~~~~ 255 (290)
.+|..|-.||.+.-+.+
T Consensus 199 ~~l~s~s~D~~i~iWd~ 215 (304)
T 2ynn_A 199 PYMITASDDLTIKIWDY 215 (304)
T ss_dssp CEEEEEETTSEEEEEET
T ss_pred CEEEEEcCCCeEEEEeC
Confidence 46888888888776644
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.094 Score=47.51 Aligned_cols=150 Identities=14% Similarity=0.122 Sum_probs=90.1
Q ss_pred EEEEee-cCceEEEEeeCCeEEEEEecCCCceec-----CCCc-eEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCce
Q psy14552 79 IVRCAV-NQRQIVIALQGGRLIYFEMHPVSDKKE-----SDKK-KIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILD 149 (290)
Q Consensus 79 Iv~as~-n~~qv~ial~~g~i~~~~~~~~~~~~~-----~~~~-~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~ 149 (290)
|..++. .+.+++.+..+|.|....++....... ..+. .|.+. +.++..++.|..|++|++..+.. +..
T Consensus 85 v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~--~~~- 161 (344)
T 4gqb_B 85 VADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ--QVV- 161 (344)
T ss_dssp EEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--TEE-
T ss_pred EEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC--CcE-
Confidence 444443 478899999999998887754322111 1122 23222 45667788888899999998765 322
Q ss_pred eeeeeee-cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCC
Q psy14552 150 ECSETIQ-MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSD 228 (290)
Q Consensus 150 ~~~~~~~-l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~ 228 (290)
..... -...|.++++.+. ...+++.|..||.|.+|.+........+....-+..+.++....
T Consensus 162 --~~~~~~h~~~V~~~~~~~~-----~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p---------- 224 (344)
T 4gqb_B 162 --LSSYRAHAAQVTCVAASPH-----KDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHP---------- 224 (344)
T ss_dssp --EEEECCCSSCEEEEEECSS-----CTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECS----------
T ss_pred --EEEEcCcCCceEEEEecCC-----CCCceeeeccccccccccccccceeeeeecceeeccceeeeecC----------
Confidence 22222 3567888888653 24578888999999999986433333332111122333433321
Q ss_pred CCCCCccCCceEEEEEecCceEEEEEE
Q psy14552 229 EPAGPVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 229 ~~~~~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
.+..+|..|-.||.+.-|.+
T Consensus 225 -------~~~~~l~sg~~dg~v~~wd~ 244 (344)
T 4gqb_B 225 -------QQSEVFVFGDENGTVSLVDT 244 (344)
T ss_dssp -------SCTTEEEEEETTSEEEEEES
T ss_pred -------CCCcceEEeccCCcEEEEEC
Confidence 23445788999999876644
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.11 Score=45.97 Aligned_cols=138 Identities=15% Similarity=0.128 Sum_probs=82.3
Q ss_pred EEEeCCCEEEEEE-eCCeEEEEEEcCCCCCceeeeeee-ecC------cceeEEEeeeCCCCCccccEEEEEe-CCCeEE
Q psy14552 119 RCAVNQRQIVIAL-QGGRLIYFEMHPETGILDECSETI-QME------SEVLCMALSNAPSGEQMSRFLAVGL-ADNTVR 189 (290)
Q Consensus 119 ~as~~~~~l~Val-~~~~i~~l~l~~~~~~l~~~~~~~-~l~------~ei~~l~i~~~~~~~~~~~~l~VGl-~dg~v~ 189 (290)
+.+.++..++++. .++.+.++.++..++.+... ... ..+ ..+..+++.+. ..+|++.. .++.+.
T Consensus 193 ~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~i~~spd------G~~l~v~~~~~~~v~ 265 (347)
T 3hfq_A 193 VFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQL-GIVKTIPADYTAHNGAAAIRLSHD------GHFLYVSNRGYNTLA 265 (347)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEEETTTTEEEEE-EEEESSCTTCCSCCEEEEEEECTT------SCEEEEEEETTTEEE
T ss_pred EECCCCCEEEEEeCCCCEEEEEEecCCCCceEEe-eeeeecCCCCCCCCcceeEEECCC------CCEEEEEeCCCCEEE
Confidence 3356666677765 37788888887533444322 122 233 33666777542 35675554 589999
Q ss_pred EEEeCCCCceeEeeEEec-CCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEec-CceEEEEEEeCCCCcccccce
Q psy14552 190 LISLAPQDCLKQKNLQGL-PDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQ-NGALLRMVVDQTSGDLSDNRM 267 (290)
Q Consensus 190 i~~l~~~~~l~~~~~~~L-~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~-dG~l~~~~~d~~~~~l~~~~~ 267 (290)
+|.+++...++.+..... +..|..+.+.. ++. +|+++-. +|.+.-|.+|..+|.+.....
T Consensus 266 v~~~~~~g~~~~~~~~~~~~~~~~~~~~sp-----------------dg~-~l~v~~~~~~~v~v~~~d~~tg~l~~~~~ 327 (347)
T 3hfq_A 266 VFAVTADGHLTLIQQISTEGDFPRDFDLDP-----------------TEA-FVVVVNQNTDNATLYARDLTSGKLSLLQK 327 (347)
T ss_dssp EEEECGGGCEEEEEEEECSSSCCCEEEECT-----------------TSS-EEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred EEEECCCCcEEEeEEEecCCCCcCeEEECC-----------------CCC-EEEEEEcCCCcEEEEEEeCCCCeEEeccc
Confidence 999975444555544443 34677776542 333 5777765 588888999999998764332
Q ss_pred EEecCcceEEEEEE
Q psy14552 268 RYLGSRPVKLFKIR 281 (290)
Q Consensus 268 ~~lG~~pv~l~~~~ 281 (290)
..--..|..++.++
T Consensus 328 ~~~~p~p~~~~~~~ 341 (347)
T 3hfq_A 328 DVTVPEGVCVRFLE 341 (347)
T ss_dssp EEECTTEEEEEECC
T ss_pred ceecCCCcEEEehh
Confidence 22224555555443
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.11 Score=45.77 Aligned_cols=164 Identities=12% Similarity=0.057 Sum_probs=95.2
Q ss_pred CCceEEEEeec----CceEEEEeeCCeEEEEEecCCCcee---c-CCCceEEEE--Ee-------------CCCEEEEEE
Q psy14552 75 DKKKIVRCAVN----QRQIVIALQGGRLIYFEMHPVSDKK---E-SDKKKIVRC--AV-------------NQRQIVIAL 131 (290)
Q Consensus 75 ~~~~Iv~as~n----~~qv~ial~~g~i~~~~~~~~~~~~---~-~~~~~Ii~a--s~-------------~~~~l~Val 131 (290)
....|.+++.+ ..+++.+..+|.|..+.+....... . .....+.+. +. ++..++.+.
T Consensus 100 ~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 179 (379)
T 3jrp_A 100 HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG 179 (379)
T ss_dssp CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEE
T ss_pred CCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEe
Confidence 34556666666 4578888889999888775432111 1 112223222 22 356688888
Q ss_pred eCCeEEEEEEcCCCCCceeeeeeee-cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCc
Q psy14552 132 QGGRLIYFEMHPETGILDECSETIQ-MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDL 210 (290)
Q Consensus 132 ~~~~i~~l~l~~~~~~l~~~~~~~~-l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~ 210 (290)
.|+.|+++.+... ........... -...|.++++.+.. ....++++|..||.+.+|.+.................
T Consensus 180 ~dg~i~i~d~~~~-~~~~~~~~~~~~h~~~v~~~~~sp~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 255 (379)
T 3jrp_A 180 ADNLVKIWKYNSD-AQTYVLESTLEGHSDWVRDVAWSPTV---LLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF 255 (379)
T ss_dssp TTSCEEEEEEETT-TTEEEEEEEECCCSSCEEEEEECCCC---SSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCC
T ss_pred CCCeEEEEEecCC-CcceeeEEEEecccCcEeEEEECCCC---CCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccC
Confidence 8999999988752 11111111122 35678888886531 0147899999999999999875321111111111112
Q ss_pred ceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeC
Q psy14552 211 AESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQ 257 (290)
Q Consensus 211 p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~ 257 (290)
+..+.-+.+. ....+|+.|-.||.+.-|.++.
T Consensus 256 ~~~v~~~~~s---------------~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 256 PDVLWRASWS---------------LSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp SSCEEEEEEC---------------SSSCCEEEEESSSSEEEEEEEE
T ss_pred CCcEEEEEEc---------------CCCCEEEEecCCCcEEEEeCCC
Confidence 2333333332 1223588899999999998863
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.059 Score=48.01 Aligned_cols=153 Identities=12% Similarity=0.114 Sum_probs=92.0
Q ss_pred ceEEEEeec---CceEEEEeeCCeEEEEEecCCCc---eec------------CCCceEEEEE--e-CCCEEEEEEeCCe
Q psy14552 77 KKIVRCAVN---QRQIVIALQGGRLIYFEMHPVSD---KKE------------SDKKKIVRCA--V-NQRQIVIALQGGR 135 (290)
Q Consensus 77 ~~Iv~as~n---~~qv~ial~~g~i~~~~~~~~~~---~~~------------~~~~~Ii~as--~-~~~~l~Val~~~~ 135 (290)
..|.+++.+ ..+++.+..+|.|..+.+..... ... .....+.+.+ . ++..++.+..|+.
T Consensus 44 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 123 (408)
T 4a11_B 44 GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKT 123 (408)
T ss_dssp SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSE
T ss_pred CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCe
Confidence 455555553 46677777788888887754221 110 0222233333 3 3445777777999
Q ss_pred EEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEE
Q psy14552 136 LIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLV 215 (290)
Q Consensus 136 i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~ 215 (290)
|+++.+.. +. .......+..+.++.+.+... ...++++|..||.+.+|.+.....+.... .-.....++.
T Consensus 124 i~iwd~~~--~~---~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~v~~~~ 193 (408)
T 4a11_B 124 LKVWDTNT--LQ---TADVFNFEETVYSHHMSPVST---KHCLVAVGTRGPKVQLCDLKSGSCSHILQ--GHRQEILAVS 193 (408)
T ss_dssp EEEEETTT--TE---EEEEEECSSCEEEEEECSSCS---SCCEEEEEESSSSEEEEESSSSCCCEEEC--CCCSCEEEEE
T ss_pred EEEeeCCC--Cc---cceeccCCCceeeeEeecCCC---CCcEEEEEcCCCeEEEEeCCCcceeeeec--CCCCcEEEEE
Confidence 99998875 22 223455778888888876532 25689999999999999986443332221 1111223332
Q ss_pred EEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEe
Q psy14552 216 MIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d 256 (290)
... .+...|..|-.||.+.-|.+.
T Consensus 194 ~~~-----------------~~~~ll~~~~~dg~i~i~d~~ 217 (408)
T 4a11_B 194 WSP-----------------RYDYILATASADSRVKLWDVR 217 (408)
T ss_dssp ECS-----------------SCTTEEEEEETTSCEEEEETT
T ss_pred ECC-----------------CCCcEEEEEcCCCcEEEEECC
Confidence 221 233347899999999888764
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.19 Score=46.26 Aligned_cols=148 Identities=10% Similarity=0.178 Sum_probs=91.6
Q ss_pred CceEEEEeecCceEEEEeeCCeEEEEEecCCCce-ecCCC-ceEEEEEeCCCEEEEEEeCCeEEEEEEcCCCCCceeeee
Q psy14552 76 KKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDK-KESDK-KKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSE 153 (290)
Q Consensus 76 ~~~Iv~as~n~~qv~ial~~g~i~~~~~~~~~~~-~~~~~-~~Ii~as~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~ 153 (290)
...|.+.+.++.+++.+..+|.|..+.+...... ....+ ..+.+.+.++..++.|..|+.|+++.+.. +... .
T Consensus 133 ~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~--~~~~---~ 207 (435)
T 1p22_A 133 SKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNT--GEML---N 207 (435)
T ss_dssp CCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSS--CCEE---E
T ss_pred CCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCC--CcEE---E
Confidence 3457777888889999999999988776532211 11222 22433366777788888899999998875 3321 1
Q ss_pred ee-ecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCC
Q psy14552 154 TI-QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAG 232 (290)
Q Consensus 154 ~~-~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~ 232 (290)
.. .-...|.++++. ..++++|..||.+.+|.+.......... .+..-...+..+.+
T Consensus 208 ~~~~h~~~v~~l~~~--------~~~l~s~s~dg~i~vwd~~~~~~~~~~~--~~~~~~~~v~~~~~------------- 264 (435)
T 1p22_A 208 TLIHHCEAVLHLRFN--------NGMMVTCSKDRSIAVWDMASPTDITLRR--VLVGHRAAVNVVDF------------- 264 (435)
T ss_dssp EECCCCSCEEEEECC--------TTEEEEEETTSCEEEEECSSSSCCEEEE--EECCCSSCEEEEEE-------------
T ss_pred EEcCCCCcEEEEEEc--------CCEEEEeeCCCcEEEEeCCCCCCceeee--EecCCCCcEEEEEe-------------
Confidence 22 234567777763 3589999999999999987543332211 11111112222222
Q ss_pred CccCCceEEEEEecCceEEEEEE
Q psy14552 233 PVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 233 ~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
.+ .+|+.|-.||.+.-+.+
T Consensus 265 ---~~-~~l~s~~~dg~i~vwd~ 283 (435)
T 1p22_A 265 ---DD-KYIVSASGDRTIKVWNT 283 (435)
T ss_dssp ---ET-TEEEEEETTSEEEEEET
T ss_pred ---CC-CEEEEEeCCCeEEEEEC
Confidence 12 25899999999877754
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.039 Score=52.43 Aligned_cols=154 Identities=14% Similarity=0.165 Sum_probs=93.8
Q ss_pred ceEEEEeecCceEEEEee-CCeEEEEEecCCCcee--c-C-CCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCce
Q psy14552 77 KKIVRCAVNQRQIVIALQ-GGRLIYFEMHPVSDKK--E-S-DKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILD 149 (290)
Q Consensus 77 ~~Iv~as~n~~qv~ial~-~g~i~~~~~~~~~~~~--~-~-~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~ 149 (290)
..+.+.+.++.+++.+.. +|.|..+.+... .+. . . ....+.+. +.++..++.+..|+.|+++.+.. +..
T Consensus 447 ~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~--~~~- 522 (615)
T 1pgu_A 447 SPGSAVSLSQNYVAVGLEEGNTIQVFKLSDL-EVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS--REV- 522 (615)
T ss_dssp SCEEEEEECSSEEEEEETTTSCEEEEETTEE-EEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--TEE-
T ss_pred CCceEEEEcCCEEEEeecCCCeEEEEECCCc-cccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCC--Ccc-
Confidence 345555555777777777 888887776432 221 1 1 12234333 45677788888899999998875 221
Q ss_pred eeeeeee--cCcceeEEEeeeCCC----CCccccEEEEEeCCCeEEEEEeCCC-CceeEeeEEecCCcceEEEEEEecCC
Q psy14552 150 ECSETIQ--MESEVLCMALSNAPS----GEQMSRFLAVGLADNTVRLISLAPQ-DCLKQKNLQGLPDLAESLVMIEMGAS 222 (290)
Q Consensus 150 ~~~~~~~--l~~ei~~l~i~~~~~----~~~~~~~l~VGl~dg~v~i~~l~~~-~~l~~~~~~~L~~~p~Sl~~~~~~~~ 222 (290)
..... -...|.++++.+... ......+|++|..||.|.+|.++.. ..+.... .-.....++....
T Consensus 523 --~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~h~~~v~~l~~s~---- 594 (615)
T 1pgu_A 523 --KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN--AHKDGVNNLLWET---- 594 (615)
T ss_dssp --EECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT--SSTTCEEEEEEEE----
T ss_pred --eeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhh--cCccceEEEEEcC----
Confidence 11222 467899999976210 0002579999999999999999753 2222210 1112334554443
Q ss_pred CCCCCCCCCCCccCCceEEEEEecCceEEEEEEeC
Q psy14552 223 DPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQ 257 (290)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~ 257 (290)
.+. |+.|-.||.+.-+.++.
T Consensus 595 -------------~~~--l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 595 -------------PST--LVSSGADACIKRWNVVL 614 (615)
T ss_dssp -------------TTE--EEEEETTSCEEEEEEC-
T ss_pred -------------CCC--eEEecCCceEEEEeeec
Confidence 334 89999999999888753
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=96.97 E-value=0.16 Score=44.14 Aligned_cols=147 Identities=14% Similarity=0.156 Sum_probs=84.5
Q ss_pred EEEEeec--CceEEEEeeCCeEEEEEecCCCceec-C-CCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeee
Q psy14552 79 IVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKE-S-DKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECS 152 (290)
Q Consensus 79 Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~-~-~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~ 152 (290)
|..++.+ ..+++.+..+|.|..+.+........ . ....+.++ +.++..++.+..|+.|+++.+.. +.. .
T Consensus 68 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~---~ 142 (312)
T 4ery_A 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT--GKC---L 142 (312)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT--CCE---E
T ss_pred eEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC--CEE---E
Confidence 4444433 55677777788887776653321111 1 11223333 34556688888899999998865 221 1
Q ss_pred eeee-cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCC
Q psy14552 153 ETIQ-MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPA 231 (290)
Q Consensus 153 ~~~~-l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~ 231 (290)
.... -...+.++.+.+. ..++++|..||.+.+|.+.....+.... .-...|. ..+.+.
T Consensus 143 ~~~~~~~~~v~~~~~~~~------~~~l~~~~~d~~i~~wd~~~~~~~~~~~--~~~~~~~--~~~~~~----------- 201 (312)
T 4ery_A 143 KTLPAHSDPVSAVHFNRD------GSLIVSSSYDGLCRIWDTASGQCLKTLI--DDDNPPV--SFVKFS----------- 201 (312)
T ss_dssp EEECCCSSCEEEEEECTT------SSEEEEEETTSCEEEEETTTCCEEEEEC--CSSCCCE--EEEEEC-----------
T ss_pred EEecCCCCcEEEEEEcCC------CCEEEEEeCCCcEEEEECCCCceeeEEe--ccCCCce--EEEEEC-----------
Confidence 1222 2456888888642 4689999999999999986433222211 1111222 222321
Q ss_pred CCccCCceEEEEEecCceEEEEEE
Q psy14552 232 GPVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 232 ~~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
....+|+.|-.||.+.-|.+
T Consensus 202 ----~~~~~l~~~~~d~~i~iwd~ 221 (312)
T 4ery_A 202 ----PNGKYILAATLDNTLKLWDY 221 (312)
T ss_dssp ----TTSSEEEEEETTTEEEEEET
T ss_pred ----CCCCEEEEEcCCCeEEEEEC
Confidence 22346888999998877754
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.17 Score=44.21 Aligned_cols=145 Identities=8% Similarity=0.067 Sum_probs=84.6
Q ss_pred CceEEEEeeCCeEEEEEecCCCceec-C-CCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcce
Q psy14552 86 QRQIVIALQGGRLIYFEMHPVSDKKE-S-DKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEV 161 (290)
Q Consensus 86 ~~qv~ial~~g~i~~~~~~~~~~~~~-~-~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei 161 (290)
..+++.+..+|.|..+.+........ . ....+.+. +.++..++.+..|+.|+++.+.. +.. ......+..+
T Consensus 44 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~---~~~~~~~~~v 118 (369)
T 3zwl_B 44 GDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSN--GQC---VATWKSPVPV 118 (369)
T ss_dssp SCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT--CCE---EEEEECSSCE
T ss_pred CCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CcE---EEEeecCCCe
Confidence 44566666677777666543221111 1 12224333 34566788888899999998875 322 2344578889
Q ss_pred eEEEeeeCCCCCccccEEEEEeCC-----CeEEEEEeCCCCceeEeeEEecC------Ccc--eEEEEEEecCCCCCCCC
Q psy14552 162 LCMALSNAPSGEQMSRFLAVGLAD-----NTVRLISLAPQDCLKQKNLQGLP------DLA--ESLVMIEMGASDPTSSD 228 (290)
Q Consensus 162 ~~l~i~~~~~~~~~~~~l~VGl~d-----g~v~i~~l~~~~~l~~~~~~~L~------~~p--~Sl~~~~~~~~~~~~~~ 228 (290)
.++++.+. ..+++++..+ |.+.+|.+.............-. ... ..+..+.+.
T Consensus 119 ~~~~~~~~------~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 184 (369)
T 3zwl_B 119 KRVEFSPC------GNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWS-------- 184 (369)
T ss_dssp EEEEECTT------SSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEEC--------
T ss_pred EEEEEccC------CCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEc--------
Confidence 99988643 5788899888 99999998644322111111100 000 123333321
Q ss_pred CCCCCccCCceEEEEEecCceEEEEEEe
Q psy14552 229 EPAGPVTLGNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 229 ~~~~~~~~~~~~L~iGl~dG~l~~~~~d 256 (290)
....+|++|..||.+.-|.+.
T Consensus 185 -------~~~~~l~~~~~dg~i~i~d~~ 205 (369)
T 3zwl_B 185 -------TKGKYIIAGHKDGKISKYDVS 205 (369)
T ss_dssp -------GGGCEEEEEETTSEEEEEETT
T ss_pred -------CCCCEEEEEcCCCEEEEEECC
Confidence 123468999999999888653
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.13 Score=45.74 Aligned_cols=111 Identities=16% Similarity=0.163 Sum_probs=64.8
Q ss_pred CceEEEEeec--CceEEEEeeCCeEEEEEecCCCceec----C-CCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCC
Q psy14552 76 KKKIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKE----S-DKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETG 146 (290)
Q Consensus 76 ~~~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~----~-~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~ 146 (290)
...|.+++.+ ..+++.+..+|.|..+.+.....|.+ . ....+.+. +.++..++.+..|+.|+++.++.. .
T Consensus 55 ~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~ 133 (377)
T 3dwl_C 55 DKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQE-N 133 (377)
T ss_dssp SSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----
T ss_pred CceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCc-c
Confidence 3456666655 46777777788888777654331211 1 12223333 345667888888999999877652 1
Q ss_pred Cceeeeeeee--cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeC
Q psy14552 147 ILDECSETIQ--MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLA 194 (290)
Q Consensus 147 ~l~~~~~~~~--l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~ 194 (290)
.. ....... ....|.++++.+. ..++++|..||.+.+|.+.
T Consensus 134 ~~-~~~~~~~~~h~~~v~~~~~~~~------~~~l~~~~~d~~i~iwd~~ 176 (377)
T 3dwl_C 134 DW-WVSKHLKRPLRSTILSLDWHPN------NVLLAAGCADRKAYVLSAY 176 (377)
T ss_dssp -C-CCCEEECSSCCSCEEEEEECTT------SSEEEEEESSSCEEEEEEC
T ss_pred cc-eeeeEeecccCCCeEEEEEcCC------CCEEEEEeCCCEEEEEEEE
Confidence 11 1112222 4567888888642 4689999999999999985
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.14 Score=44.71 Aligned_cols=149 Identities=9% Similarity=0.118 Sum_probs=91.3
Q ss_pred ceEEEEeecC-----ceEEEEeeCCeEEEEEecCCCcee-c---CCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCC
Q psy14552 77 KKIVRCAVNQ-----RQIVIALQGGRLIYFEMHPVSDKK-E---SDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPET 145 (290)
Q Consensus 77 ~~Iv~as~n~-----~qv~ial~~g~i~~~~~~~~~~~~-~---~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~ 145 (290)
..|.+++.+. .+++.+..+|.|..+.+....... . .....|.+. +.++..++.+..|+.|+++.+..
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~-- 117 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSS-- 117 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--
T ss_pred CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCC--
Confidence 4456666553 567777778888888776422211 1 112224333 34566788888899999998875
Q ss_pred CCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCC
Q psy14552 146 GILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPT 225 (290)
Q Consensus 146 ~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~ 225 (290)
+.. ......+..|.++++.+.. ...++++|..||.+.+|.+.....+... .... .......
T Consensus 118 ~~~---~~~~~~~~~v~~~~~~~~~----~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~---~~~~~~~------ 178 (368)
T 3mmy_A 118 NQA---IQIAQHDAPVKTIHWIKAP----NYSCVMTGSWDKTLKFWDTRSSNPMMVL---QLPE---RCYCADV------ 178 (368)
T ss_dssp TEE---EEEEECSSCEEEEEEEECS----SCEEEEEEETTSEEEEECSSCSSCSEEE---ECSS---CEEEEEE------
T ss_pred CCc---eeeccccCceEEEEEEeCC----CCCEEEEccCCCcEEEEECCCCcEEEEE---ecCC---CceEEEe------
Confidence 322 2234467789999984332 2468999999999999998654333332 2222 1212221
Q ss_pred CCCCCCCCccCCceEEEEEecCceEEEEEEeC
Q psy14552 226 SSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQ 257 (290)
Q Consensus 226 ~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~ 257 (290)
. ..+++++..+|.+.-|.++.
T Consensus 179 ----------~-~~~~~~~~~~~~i~~~~~~~ 199 (368)
T 3mmy_A 179 ----------I-YPMAVVATAERGLIVYQLEN 199 (368)
T ss_dssp ----------E-TTEEEEEEGGGCEEEEECSS
T ss_pred ----------c-CCeeEEEeCCCcEEEEEecc
Confidence 1 12588899999988887754
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.19 Score=44.64 Aligned_cols=147 Identities=13% Similarity=0.146 Sum_probs=85.1
Q ss_pred ceEEEEeec--CceEEEEeeCCeEEEEEecCCCceec-CC-CceE--EEEEeCCCEEEEEEeCCeEEEEEEcCCCCCcee
Q psy14552 77 KKIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKE-SD-KKKI--VRCAVNQRQIVIALQGGRLIYFEMHPETGILDE 150 (290)
Q Consensus 77 ~~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~-~~-~~~I--i~as~~~~~l~Val~~~~i~~l~l~~~~~~l~~ 150 (290)
..|.+++.+ ..+++.+..+|.|..+.+........ .. ...+ ++.+.++..++.|..|+.|+++.+.. +.+.
T Consensus 165 ~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~--~~~~- 241 (321)
T 3ow8_A 165 KFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH--ANLA- 241 (321)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTT--CCEE-
T ss_pred ceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCC--ccee-
Confidence 345444443 56777777788887776543221111 11 1123 22245666788887899999998765 2221
Q ss_pred eeeeee-cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCC
Q psy14552 151 CSETIQ-MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDE 229 (290)
Q Consensus 151 ~~~~~~-l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~ 229 (290)
.... -...|.++++.+. ..+|+.|..||++.+|.+.....+... ..-...+.-+.+.
T Consensus 242 --~~~~~h~~~v~~~~~sp~------~~~l~s~s~D~~v~iwd~~~~~~~~~~-----~~h~~~v~~v~~s--------- 299 (321)
T 3ow8_A 242 --GTLSGHASWVLNVAFCPD------DTHFVSSSSDKSVKVWDVGTRTCVHTF-----FDHQDQVWGVKYN--------- 299 (321)
T ss_dssp --EEECCCSSCEEEEEECTT------SSEEEEEETTSCEEEEETTTTEEEEEE-----CCCSSCEEEEEEC---------
T ss_pred --EEEcCCCCceEEEEECCC------CCEEEEEeCCCcEEEEeCCCCEEEEEE-----cCCCCcEEEEEEC---------
Confidence 1222 3456888888643 468999999999999998643222221 1111222233331
Q ss_pred CCCCccCCceEEEEEecCceEEEEE
Q psy14552 230 PAGPVTLGNLYLYVGLQNGALLRMV 254 (290)
Q Consensus 230 ~~~~~~~~~~~L~iGl~dG~l~~~~ 254 (290)
....+|+.|-.||.+.-|.
T Consensus 300 ------~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 300 ------GNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp ------TTSSEEEEEETTCCEEEEE
T ss_pred ------CCCCEEEEEeCCCeEEEEe
Confidence 1233588888999887664
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.41 Score=47.95 Aligned_cols=165 Identities=14% Similarity=0.114 Sum_probs=95.9
Q ss_pred CceEEEEeec----CceEEEEeeCCeEEEEEecCCCceec----C-CCceEEEE--EeC--CCEEEEEEeCCeEEEEEEc
Q psy14552 76 KKKIVRCAVN----QRQIVIALQGGRLIYFEMHPVSDKKE----S-DKKKIVRC--AVN--QRQIVIALQGGRLIYFEMH 142 (290)
Q Consensus 76 ~~~Iv~as~n----~~qv~ial~~g~i~~~~~~~~~~~~~----~-~~~~Ii~a--s~~--~~~l~Val~~~~i~~l~l~ 142 (290)
...|.+.+.+ ..+++.+..+|.|....+... .|.. . ....|.+. +.+ +..++.|..|+.|+++.+.
T Consensus 53 ~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~-~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~ 131 (753)
T 3jro_A 53 EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG-RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK 131 (753)
T ss_dssp SSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETT-EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred cCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC-cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEee
Confidence 3456666654 567777888888888877642 2211 1 22224333 334 5678888889999999887
Q ss_pred CCCCCceeeeeeeecCcceeEEEeeeCCC-------CCccccEEEEEeCCCeEEEEEeCCCCce-eEeeEEecCCcceEE
Q psy14552 143 PETGILDECSETIQMESEVLCMALSNAPS-------GEQMSRFLAVGLADNTVRLISLAPQDCL-KQKNLQGLPDLAESL 214 (290)
Q Consensus 143 ~~~~~l~~~~~~~~l~~ei~~l~i~~~~~-------~~~~~~~l~VGl~dg~v~i~~l~~~~~l-~~~~~~~L~~~p~Sl 214 (290)
.. ... ........+..|.++.+.+... ......++++|..||.|.+|.+...... .... .+..-...+
T Consensus 132 ~~-~~~-~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~~~~h~~~V 207 (753)
T 3jro_A 132 EN-GTT-SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES--TLEGHSDWV 207 (753)
T ss_dssp SS-SCC-CCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEE--EECCCSSCE
T ss_pred cC-CCc-ceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeee--eecCCCCcE
Confidence 52 111 1111223567888998875310 0012578999999999999998643221 2221 222111222
Q ss_pred EEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeC
Q psy14552 215 VMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQ 257 (290)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~ 257 (290)
.-+.+... .....+|..|-.||.+.-|.+..
T Consensus 208 ~~l~~sp~------------~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 208 RDVAWSPT------------VLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp EEEEECCC------------CSSSEEEEEEESSSCEEEEEESS
T ss_pred EEEEeccC------------CCCCCEEEEEecCCEEEEecCCC
Confidence 22333111 01146799999999999888754
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.2 Score=44.55 Aligned_cols=142 Identities=11% Similarity=0.156 Sum_probs=84.2
Q ss_pred eecCceEEEEeeCCeEEEEEecCCCc-eec-CCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeee-c
Q psy14552 83 AVNQRQIVIALQGGRLIYFEMHPVSD-KKE-SDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQ-M 157 (290)
Q Consensus 83 s~n~~qv~ial~~g~i~~~~~~~~~~-~~~-~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~-l 157 (290)
+-+..+++.+..+|.+..+.+..... +.. ..+..+.+. +.++..++.+..|+.|+++.+.. +.+ ..... -
T Consensus 131 spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~--~~~---~~~~~~h 205 (321)
T 3ow8_A 131 SPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT--GKL---LHTLEGH 205 (321)
T ss_dssp CTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--TEE---EEEECCC
T ss_pred CCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCC--CcE---EEEEccc
Confidence 33456677777778887776643321 111 122223333 45677788888899999998765 322 12222 3
Q ss_pred CcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCC
Q psy14552 158 ESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLG 237 (290)
Q Consensus 158 ~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~ 237 (290)
...|.++++.+. ..+|+.|..||.|.+|.+........ +..-...+.-+.+. ..
T Consensus 206 ~~~v~~l~~spd------~~~l~s~s~dg~i~iwd~~~~~~~~~-----~~~h~~~v~~~~~s---------------p~ 259 (321)
T 3ow8_A 206 AMPIRSLTFSPD------SQLLVTASDDGYIKIYDVQHANLAGT-----LSGHASWVLNVAFC---------------PD 259 (321)
T ss_dssp SSCCCEEEECTT------SCEEEEECTTSCEEEEETTTCCEEEE-----ECCCSSCEEEEEEC---------------TT
T ss_pred CCceeEEEEcCC------CCEEEEEcCCCeEEEEECCCcceeEE-----EcCCCCceEEEEEC---------------CC
Confidence 456888888642 46899999999999999864322221 22111122223331 12
Q ss_pred ceEEEEEecCceEEEEEE
Q psy14552 238 NLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 238 ~~~L~iGl~dG~l~~~~~ 255 (290)
..+|+.|-.||.+.-+.+
T Consensus 260 ~~~l~s~s~D~~v~iwd~ 277 (321)
T 3ow8_A 260 DTHFVSSSSDKSVKVWDV 277 (321)
T ss_dssp SSEEEEEETTSCEEEEET
T ss_pred CCEEEEEeCCCcEEEEeC
Confidence 336889999999887755
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.13 Score=45.10 Aligned_cols=141 Identities=11% Similarity=0.149 Sum_probs=81.8
Q ss_pred CceEEEEeeCCeEEEEEecCCCceec--CCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeee-ecCcc
Q psy14552 86 QRQIVIALQGGRLIYFEMHPVSDKKE--SDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECSETI-QMESE 160 (290)
Q Consensus 86 ~~qv~ial~~g~i~~~~~~~~~~~~~--~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~-~l~~e 160 (290)
.++++.+..+|.|....+........ .....+.++ +.++..++.|..|++|+++.+.. +.. .... .-+..
T Consensus 25 ~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~--~~~---~~~~~~h~~~ 99 (304)
T 2ynn_A 25 EPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT--GEK---VVDFEAHPDY 99 (304)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT--CCE---EEEEECCSSC
T ss_pred CCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC--CcE---EEEEeCCCCc
Confidence 45556666677777665543211111 111123222 45677888888899999998765 321 1122 24567
Q ss_pred eeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceE
Q psy14552 161 VLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLY 240 (290)
Q Consensus 161 i~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (290)
|.++++.+. ..+++.|..||+|.+|.+.....+.. .+..-...+.-+.+.. .+..+
T Consensus 100 v~~~~~~~~------~~~l~sgs~D~~v~lWd~~~~~~~~~----~~~~h~~~v~~v~~~p--------------~~~~~ 155 (304)
T 2ynn_A 100 IRSIAVHPT------KPYVLSGSDDLTVKLWNWENNWALEQ----TFEGHEHFVMCVAFNP--------------KDPST 155 (304)
T ss_dssp EEEEEECSS------SSEEEEEETTSCEEEEEGGGTTEEEE----EECCCCSCEEEEEECT--------------TCTTE
T ss_pred EEEEEEcCC------CCEEEEECCCCeEEEEECCCCcchhh----hhcccCCcEEEEEECC--------------CCCCE
Confidence 889988643 46899999999999999864322211 1111112222233311 12335
Q ss_pred EEEEecCceEEEEEE
Q psy14552 241 LYVGLQNGALLRMVV 255 (290)
Q Consensus 241 L~iGl~dG~l~~~~~ 255 (290)
|..|-.||.+.-+.+
T Consensus 156 l~sgs~D~~v~iwd~ 170 (304)
T 2ynn_A 156 FASGCLDRTVKVWSL 170 (304)
T ss_dssp EEEEETTSEEEEEET
T ss_pred EEEEeCCCeEEEEEC
Confidence 888889998887765
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=96.80 E-value=0.22 Score=43.20 Aligned_cols=150 Identities=15% Similarity=0.207 Sum_probs=85.1
Q ss_pred eEEEEeec--CceEEEEeeCCeEEEEEecCCCceec-CC-CceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceee
Q psy14552 78 KIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKE-SD-KKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDEC 151 (290)
Q Consensus 78 ~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~-~~-~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~ 151 (290)
.|.+++.+ .++++.+..+|.|..+.+........ +. ...+.+. +.++..++.+..|+.|+++.+.. +..
T Consensus 109 ~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~--~~~--- 183 (312)
T 4ery_A 109 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS--GQC--- 183 (312)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--CCE---
T ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCC--Cce---
Confidence 35555544 45677777788888777653322111 11 1223222 44566788888899999998765 221
Q ss_pred eeee--ecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCC
Q psy14552 152 SETI--QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDE 229 (290)
Q Consensus 152 ~~~~--~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~ 229 (290)
.... .-...+.++++.+. ..++++|..||.+.+|.+.....+.... .-......+... +.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~-~~--------- 245 (312)
T 4ery_A 184 LKTLIDDDNPPVSFVKFSPN------GKYILAATLDNTLKLWDYSKGKCLKTYT--GHKNEKYCIFAN-FS--------- 245 (312)
T ss_dssp EEEECCSSCCCEEEEEECTT------SSEEEEEETTTEEEEEETTTTEEEEEEC--SSCCSSSCCCEE-EE---------
T ss_pred eeEEeccCCCceEEEEECCC------CCEEEEEcCCCeEEEEECCCCcEEEEEE--ecCCceEEEEEE-EE---------
Confidence 1112 12345777777642 4789999999999999986432222211 000111111111 10
Q ss_pred CCCCccCCceEEEEEecCceEEEEEE
Q psy14552 230 PAGPVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 230 ~~~~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
..+..+|..|-.||.+.-|.+
T Consensus 246 -----~~~~~~l~sg~~dg~i~vwd~ 266 (312)
T 4ery_A 246 -----VTGGKWIVSGSEDNLVYIWNL 266 (312)
T ss_dssp -----CSSSCEEEECCTTSCEEEEET
T ss_pred -----eCCCcEEEEECCCCEEEEEEC
Confidence 123456899999999887765
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=96.79 E-value=0.17 Score=45.11 Aligned_cols=110 Identities=14% Similarity=0.202 Sum_probs=69.2
Q ss_pred CceEEEEeecCc-eEEEEeeCCeEEEEEecCCC---ceecC--C---CceEEEE--EeCCCEEEEEEeC---CeEEEEEE
Q psy14552 76 KKKIVRCAVNQR-QIVIALQGGRLIYFEMHPVS---DKKES--D---KKKIVRC--AVNQRQIVIALQG---GRLIYFEM 141 (290)
Q Consensus 76 ~~~Iv~as~n~~-qv~ial~~g~i~~~~~~~~~---~~~~~--~---~~~Ii~a--s~~~~~l~Val~~---~~i~~l~l 141 (290)
...|.+++.+.. +++.+..+|.|..+.+.... .+... . ...+.+. +.++..++++..+ +.|+++.+
T Consensus 186 ~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~ 265 (397)
T 1sq9_A 186 SQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYET 265 (397)
T ss_dssp CCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEET
T ss_pred CCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEEC
Confidence 344555555522 67777778888888765322 12210 1 2234333 4566778888888 89999988
Q ss_pred cCCCCCceeeeeeee--------------cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCC
Q psy14552 142 HPETGILDECSETIQ--------------MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQ 196 (290)
Q Consensus 142 ~~~~~~l~~~~~~~~--------------l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~ 196 (290)
.. +.... ... -...|.++++.+. ..+|++|..||.|.+|.+...
T Consensus 266 ~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~dg~i~iwd~~~~ 323 (397)
T 1sq9_A 266 EF--GERIG---SLSVPTHSSQASLGEFAHSSWVMSLSFNDS------GETLCSAGWDGKLRFWDVKTK 323 (397)
T ss_dssp TT--CCEEE---EECBC--------CCBSBSSCEEEEEECSS------SSEEEEEETTSEEEEEETTTT
T ss_pred CC--Ccccc---eeccCcccccccccccccCCcEEEEEECCC------CCEEEEEeCCCeEEEEEcCCC
Confidence 65 22111 122 3567888888642 468999999999999998643
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.21 Score=45.21 Aligned_cols=152 Identities=11% Similarity=0.106 Sum_probs=90.4
Q ss_pred CceEEEEee---cCceEEEEeeCCeEEEEEecCCCc--------eecC-CCceEEEE--EeCC-CEEEEEEeCCeEEEEE
Q psy14552 76 KKKIVRCAV---NQRQIVIALQGGRLIYFEMHPVSD--------KKES-DKKKIVRC--AVNQ-RQIVIALQGGRLIYFE 140 (290)
Q Consensus 76 ~~~Iv~as~---n~~qv~ial~~g~i~~~~~~~~~~--------~~~~-~~~~Ii~a--s~~~-~~l~Val~~~~i~~l~ 140 (290)
...|...+. ++.+++.+..+|.|..+.+..... .... ....+.+. +.++ ..++.+..|+.|+++.
T Consensus 81 ~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 160 (402)
T 2aq5_A 81 TAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWD 160 (402)
T ss_dssp SSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEE
T ss_pred CCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEE
Confidence 445666666 456788888889998888764311 0001 11223222 3343 4677777899999998
Q ss_pred EcCCCCCceeeeeee---ecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEE
Q psy14552 141 MHPETGILDECSETI---QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMI 217 (290)
Q Consensus 141 l~~~~~~l~~~~~~~---~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~ 217 (290)
+.. +. . .... ..+..|.++++.+. ..++++|..||.+.+|.+.....+.......-+..+.++...
T Consensus 161 ~~~--~~--~-~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (402)
T 2aq5_A 161 VGT--GA--A-VLTLGPDVHPDTIYSVDWSRD------GALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFV 229 (402)
T ss_dssp TTT--TE--E-EEEECTTTCCSCEEEEEECTT------SSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEEC
T ss_pred CCC--CC--c-cEEEecCCCCCceEEEEECCC------CCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEc
Confidence 875 32 1 1222 24667889988652 468899999999999998642222211000111123444332
Q ss_pred EecCCCCCCCCCCCCCccCCceEEEEE---ecCceEEEEEEe
Q psy14552 218 EMGASDPTSSDEPAGPVTLGNLYLYVG---LQNGALLRMVVD 256 (290)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~L~iG---l~dG~l~~~~~d 256 (290)
....+|.+| ..||.+.-|.+.
T Consensus 230 ------------------~~~~~l~~g~~~~~d~~i~iwd~~ 253 (402)
T 2aq5_A 230 ------------------SEGKILTTGFSRMSERQVALWDTK 253 (402)
T ss_dssp ------------------STTEEEEEEECTTCCEEEEEEETT
T ss_pred ------------------CCCcEEEEeccCCCCceEEEEcCc
Confidence 124468888 789998888653
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.21 Score=50.13 Aligned_cols=161 Identities=9% Similarity=0.077 Sum_probs=87.5
Q ss_pred CceEEEEeeCCeEEEEEecCCCceec----CCC-ceEEEEE--eC--CCEEEEEEeCCeEEEEEEcCCCCCceeeeeeee
Q psy14552 86 QRQIVIALQGGRLIYFEMHPVSDKKE----SDK-KKIVRCA--VN--QRQIVIALQGGRLIYFEMHPETGILDECSETIQ 156 (290)
Q Consensus 86 ~~qv~ial~~g~i~~~~~~~~~~~~~----~~~-~~Ii~as--~~--~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~ 156 (290)
..+++.+..+|.|..+.+.. ..+.. ..+ ..|.+.+ .+ +..++.|..|+.|+++.+.. +..........
T Consensus 21 g~~latg~~dg~I~vwd~~~-~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~--~~~~~~~~~~~ 97 (753)
T 3jro_A 21 GKRLATCSSDKTIKIFEVEG-ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN--GRWSQIAVHAV 97 (753)
T ss_dssp SCCEEEEETTTEEEEEEEET-TEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEET--TEEEEEEEECC
T ss_pred CCeEEEEECCCcEEEEecCC-CCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCC--CcccccccccC
Confidence 45666666778887776642 11111 112 2243333 33 56688888899999999876 32212211122
Q ss_pred cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccC
Q psy14552 157 MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTL 236 (290)
Q Consensus 157 l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~ 236 (290)
....|.++++.+.. ...++++|..||.+.+|.+.......... +..-+..+..+.+........... ....
T Consensus 98 h~~~V~~v~~sp~~----~~~~l~sgs~dg~I~vwdl~~~~~~~~~~---~~~~~~~v~~l~~~p~~~~~~~~~--~~~~ 168 (753)
T 3jro_A 98 HSASVNSVQWAPHE----YGPLLLVASSDGKVSVVEFKENGTTSPII---IDAHAIGVNSASWAPATIEEDGEH--NGTK 168 (753)
T ss_dssp CSSCEEEEEECCGG----GCSEEEEEETTSEEEEEECCSSSCCCCEE---EECCSSCEEEEEECCCC-----------CG
T ss_pred CCCCeEEEEECCCC----CCCEEEEEeCCCcEEEEEeecCCCcceeE---eecCCCceEEEEecCccccccccc--ccCC
Confidence 46789999986531 14689999999999999986542222221 111122222233211100000000 0001
Q ss_pred CceEEEEEecCceEEEEEEeCC
Q psy14552 237 GNLYLYVGLQNGALLRMVVDQT 258 (290)
Q Consensus 237 ~~~~L~iGl~dG~l~~~~~d~~ 258 (290)
...+|..|-.||.+.-|.+...
T Consensus 169 d~~~l~sgs~dg~I~iwd~~~~ 190 (753)
T 3jro_A 169 ESRKFVTGGADNLVKIWKYNSD 190 (753)
T ss_dssp GGCCEEEEETTSCEEEEEEETT
T ss_pred CCCEEEEEECCCeEEEEeccCC
Confidence 2456999999999998987543
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.15 Score=45.41 Aligned_cols=108 Identities=14% Similarity=0.159 Sum_probs=68.1
Q ss_pred CceEEEEeec--CceEEEEeeCCeEEEEEecCCCce-ec-CCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCce
Q psy14552 76 KKKIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDK-KE-SDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILD 149 (290)
Q Consensus 76 ~~~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~-~~-~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~ 149 (290)
...|...+.+ .++++.+..+|.|..+.+...... .. .....+.+. +.++ .++.+..++.|+++.+.. +..
T Consensus 247 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~--~~~- 322 (425)
T 1r5m_A 247 HGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ--NTL- 322 (425)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTT--TEE-
T ss_pred CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCC--CcE-
Confidence 3445555554 567887777898887766432211 11 122234333 3444 777777899999998865 221
Q ss_pred eeeeeee-cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCC
Q psy14552 150 ECSETIQ-MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAP 195 (290)
Q Consensus 150 ~~~~~~~-l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~ 195 (290)
..... -...+.++++.+. ..++++|..||.+.+|.+..
T Consensus 323 --~~~~~~~~~~i~~~~~s~~------~~~l~~~~~dg~i~i~~~~~ 361 (425)
T 1r5m_A 323 --LALSIVDGVPIFAGRISQD------GQKYAVAFMDGQVNVYDLKK 361 (425)
T ss_dssp --EEEEECTTCCEEEEEECTT------SSEEEEEETTSCEEEEECHH
T ss_pred --eEecccCCccEEEEEEcCC------CCEEEEEECCCeEEEEECCC
Confidence 12222 3567888888642 46899999999999999863
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.064 Score=48.49 Aligned_cols=143 Identities=10% Similarity=0.093 Sum_probs=87.1
Q ss_pred EeecCceEEEEeeCCeEEEEEecCCCceecCCCceEEEE---EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeee-ec
Q psy14552 82 CAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRC---AVNQRQIVIALQGGRLIYFEMHPETGILDECSETI-QM 157 (290)
Q Consensus 82 as~n~~qv~ial~~g~i~~~~~~~~~~~~~~~~~~Ii~a---s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~-~l 157 (290)
-+-...+++.+..+|.+..+.+.............++.+ +.++..++.|..|+.|+++.+.. +.. .... .-
T Consensus 64 ~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~---~~~~~~h 138 (420)
T 3vl1_A 64 FEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNF--NLQ---REIDQAH 138 (420)
T ss_dssp EEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTS--CEE---EEETTSS
T ss_pred eeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCC--cce---eeecccc
Confidence 344567777788888888777643211111111234333 44567788888899999987664 221 1121 34
Q ss_pred CcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCC
Q psy14552 158 ESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLG 237 (290)
Q Consensus 158 ~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~ 237 (290)
...|.++++.+. ..+|+.|..||.+.+|.+.....+.... .-.....++.... .
T Consensus 139 ~~~v~~~~~~~~------~~~l~s~s~d~~i~iwd~~~~~~~~~~~--~h~~~v~~~~~~~------------------~ 192 (420)
T 3vl1_A 139 VSEITKLKFFPS------GEALISSSQDMQLKIWSVKDGSNPRTLI--GHRATVTDIAIID------------------R 192 (420)
T ss_dssp SSCEEEEEECTT------SSEEEEEETTSEEEEEETTTCCCCEEEE--CCSSCEEEEEEET------------------T
T ss_pred cCccEEEEECCC------CCEEEEEeCCCeEEEEeCCCCcCceEEc--CCCCcEEEEEEcC------------------C
Confidence 678999998643 4689999999999999987543333221 1112233443331 2
Q ss_pred ceEEEEEecCceEEEEEE
Q psy14552 238 NLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 238 ~~~L~iGl~dG~l~~~~~ 255 (290)
..+|+.|-.||.+.-+.+
T Consensus 193 ~~~l~s~~~d~~v~iwd~ 210 (420)
T 3vl1_A 193 GRNVLSASLDGTIRLWEC 210 (420)
T ss_dssp TTEEEEEETTSCEEEEET
T ss_pred CCEEEEEcCCCcEEEeEC
Confidence 235889999999887754
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.3 Score=43.95 Aligned_cols=161 Identities=14% Similarity=0.170 Sum_probs=89.8
Q ss_pred CceEEEEeec--CceEEEEeeCCeEEEEEecCCCceec--CCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCce
Q psy14552 76 KKKIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKE--SDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILD 149 (290)
Q Consensus 76 ~~~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~--~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~ 149 (290)
...|.+.+.+ ..+++.+..+|.|..+.+........ .....+.+. +.++..++.+..|+.|+++.+.. +...
T Consensus 139 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~--~~~~ 216 (420)
T 3vl1_A 139 VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT--GTTI 216 (420)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT--TEEE
T ss_pred cCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCC--Ccee
Confidence 3456666654 56777777889998887754322111 112223222 45677788888899999998764 2211
Q ss_pred eeee-eeecCcceeEEEeeeCCCC---------------CccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceE
Q psy14552 150 ECSE-TIQMESEVLCMALSNAPSG---------------EQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAES 213 (290)
Q Consensus 150 ~~~~-~~~l~~ei~~l~i~~~~~~---------------~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~S 213 (290)
.... .......+.++.+.+.... .....++++|..||.+.+|.+.....+.... ........+
T Consensus 217 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~ 295 (420)
T 3vl1_A 217 HTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLP-SKFTCSCNS 295 (420)
T ss_dssp EEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEEC-CTTSSCEEE
T ss_pred EEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcc-cccCCCcee
Confidence 1111 0013345555555332100 0135689999999999999986432222210 001112233
Q ss_pred EEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEe
Q psy14552 214 LVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 214 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d 256 (290)
+.... .+..+|+.|-.||.+.-|.+.
T Consensus 296 ~~~~~-----------------~~~~~l~~g~~dg~i~vwd~~ 321 (420)
T 3vl1_A 296 LTVDG-----------------NNANYIYAGYENGMLAQWDLR 321 (420)
T ss_dssp EEECS-----------------SCTTEEEEEETTSEEEEEETT
T ss_pred EEEeC-----------------CCCCEEEEEeCCCeEEEEEcC
Confidence 33221 234379999999999888653
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.12 Score=45.09 Aligned_cols=115 Identities=14% Similarity=0.137 Sum_probs=72.6
Q ss_pred CCceEEEEeec-CceEEEEeeCCeEEEEEecC---------CCce-ecCCCceEEEEEeCCCEEEEEEeCCeEEEEEEcC
Q psy14552 75 DKKKIVRCAVN-QRQIVIALQGGRLIYFEMHP---------VSDK-KESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHP 143 (290)
Q Consensus 75 ~~~~Iv~as~n-~~qv~ial~~g~i~~~~~~~---------~~~~-~~~~~~~Ii~as~~~~~l~Val~~~~i~~l~l~~ 143 (290)
-...|.+.+.+ +.+++.+..+|.|..+.+.. .... .......+.+.+.+...++++..++.|+++.+..
T Consensus 100 ~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~ 179 (342)
T 1yfq_A 100 ANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPL 179 (342)
T ss_dssp CCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSC
T ss_pred CCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCc
Confidence 34456666655 67888888889888776543 1100 1112223444455555588888899999998865
Q ss_pred CCCCceeeeeeeecCcceeEEEeee-CCCCCccccEEEEEeCCCeEEEEEeCCC
Q psy14552 144 ETGILDECSETIQMESEVLCMALSN-APSGEQMSRFLAVGLADNTVRLISLAPQ 196 (290)
Q Consensus 144 ~~~~l~~~~~~~~l~~ei~~l~i~~-~~~~~~~~~~l~VGl~dg~v~i~~l~~~ 196 (290)
. +...........+..+.++++.+ . ..++++|..||.+.+|.++..
T Consensus 180 ~-~~~~~~~~~~~~~~~i~~i~~~~~~------~~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 180 C-EDDNGTIEESGLKYQIRDVALLPKE------QEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp C-TTCCCEEEECSCSSCEEEEEECSGG------GCEEEEEETTSEEEEEECCTT
T ss_pred c-ccccceeeecCCCCceeEEEECCCC------CCEEEEEecCCcEEEEEEcCC
Confidence 1 11111111223567888888864 2 468999999999999998754
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.27 Score=42.81 Aligned_cols=148 Identities=9% Similarity=0.087 Sum_probs=89.5
Q ss_pred cCceEEEEeeCCeEEEEEecCCC----ceecCCC---ceEEEEE------eCCCEEEEEEeCCeEEEEEEcCCCCCceee
Q psy14552 85 NQRQIVIALQGGRLIYFEMHPVS----DKKESDK---KKIVRCA------VNQRQIVIALQGGRLIYFEMHPETGILDEC 151 (290)
Q Consensus 85 n~~qv~ial~~g~i~~~~~~~~~----~~~~~~~---~~Ii~as------~~~~~l~Val~~~~i~~l~l~~~~~~l~~~ 151 (290)
+.++++.+..+|.|..+.+.... .+....+ ..+.+.+ .++..++.+..++.|+++.+.. +..
T Consensus 128 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~--- 202 (357)
T 3i2n_A 128 GAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRN--MAL--- 202 (357)
T ss_dssp CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTT--TEE---
T ss_pred CccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECcc--Cce---
Confidence 45688888888888887765322 1211111 1232222 4566688888889999998875 222
Q ss_pred eeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEE---ecCCcceEEEEEEecCCCCCCCC
Q psy14552 152 SETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQ---GLPDLAESLVMIEMGASDPTSSD 228 (290)
Q Consensus 152 ~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~---~L~~~p~Sl~~~~~~~~~~~~~~ 228 (290)
......+..+.++++.+... ...++++|..||.+.+|.+.....+...... .-.....++....
T Consensus 203 ~~~~~~~~~v~~~~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---------- 269 (357)
T 3i2n_A 203 RWETNIKNGVCSLEFDRKDI---SMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLP---------- 269 (357)
T ss_dssp EEEEECSSCEEEEEESCSSS---SCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEET----------
T ss_pred eeecCCCCceEEEEcCCCCC---CCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECC----------
Confidence 22345678899999875310 1468999999999999998632222111111 1112223333331
Q ss_pred CCCCCccCCceEEEEEecCceEEEEEEeC
Q psy14552 229 EPAGPVTLGNLYLYVGLQNGALLRMVVDQ 257 (290)
Q Consensus 229 ~~~~~~~~~~~~L~iGl~dG~l~~~~~d~ 257 (290)
.+..+|+.|-.||.+.-|.+..
T Consensus 270 -------~~~~~l~~~~~dg~i~iwd~~~ 291 (357)
T 3i2n_A 270 -------QNRELFLTAGGAGGLHLWKYEY 291 (357)
T ss_dssp -------TEEEEEEEEETTSEEEEEEEEC
T ss_pred -------CCCcEEEEEeCCCcEEEeecCC
Confidence 2344799999999999998864
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.29 Score=42.61 Aligned_cols=113 Identities=11% Similarity=0.123 Sum_probs=69.7
Q ss_pred ceEEEEe------ecCceEEEEeeCCeEEEEEecCCCc-eecCCCceEEEE--Ee---CCCEEEEEEeCCeEEEEEEcCC
Q psy14552 77 KKIVRCA------VNQRQIVIALQGGRLIYFEMHPVSD-KKESDKKKIVRC--AV---NQRQIVIALQGGRLIYFEMHPE 144 (290)
Q Consensus 77 ~~Iv~as------~n~~qv~ial~~g~i~~~~~~~~~~-~~~~~~~~Ii~a--s~---~~~~l~Val~~~~i~~l~l~~~ 144 (290)
..+.+.. .+..+++.+..+|.|..+.+..... +.......+.+. +. ++..++++..++.|+++.+...
T Consensus 165 ~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 244 (357)
T 3i2n_A 165 RDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ 244 (357)
T ss_dssp CCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE
T ss_pred CceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC
Confidence 3555555 4577788888889998887653221 111122234333 33 5667888888999999987641
Q ss_pred CCCceeee--eeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCC
Q psy14552 145 TGILDECS--ETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAP 195 (290)
Q Consensus 145 ~~~l~~~~--~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~ 195 (290)
..+.... ....-...|.++++.+. +..+++.|..||.+.+|.+..
T Consensus 245 -~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~ 291 (357)
T 3i2n_A 245 -HPTKGFASVSEKAHKSTVWQVRHLPQ-----NRELFLTAGGAGGLHLWKYEY 291 (357)
T ss_dssp -ETTTEEEEEEEECCSSCEEEEEEETT-----EEEEEEEEETTSEEEEEEEEC
T ss_pred -CcccceeeeccCCCcCCEEEEEECCC-----CCcEEEEEeCCCcEEEeecCC
Confidence 1111110 00134667888888743 234899999999999999864
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.35 Score=43.15 Aligned_cols=68 Identities=16% Similarity=0.169 Sum_probs=48.2
Q ss_pred EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeee-cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCC
Q psy14552 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQ-MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQD 197 (290)
Q Consensus 121 s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~-l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~ 197 (290)
+.++..++.|..|+++++..+.. +..... .... -...|.++++.+. ..+|+.|..||.+.+|.++...
T Consensus 70 sp~g~~l~s~s~D~~v~iw~~~~--~~~~~~-~~~~~h~~~v~~v~~sp~------~~~l~s~s~D~~v~iwd~~~~~ 138 (345)
T 3fm0_A 70 SPCGNYLASASFDATTCIWKKNQ--DDFECV-TTLEGHENEVKSVAWAPS------GNLLATCSRDKSVWVWEVDEED 138 (345)
T ss_dssp CTTSSEEEEEETTSCEEEEEECC--C-EEEE-EEECCCSSCEEEEEECTT------SSEEEEEETTSCEEEEEECTTS
T ss_pred CCCCCEEEEEECCCcEEEEEccC--CCeEEE-EEccCCCCCceEEEEeCC------CCEEEEEECCCeEEEEECCCCC
Confidence 45667788888899999998865 222221 1222 3467889988653 4689999999999999997543
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.29 Score=42.31 Aligned_cols=120 Identities=10% Similarity=0.093 Sum_probs=69.2
Q ss_pred EEEEeCCCEEEEEEe-CCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEe-CCCeEEEEEeCC
Q psy14552 118 VRCAVNQRQIVIALQ-GGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGL-ADNTVRLISLAP 195 (290)
Q Consensus 118 i~as~~~~~l~Val~-~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl-~dg~v~i~~l~~ 195 (290)
++.+.++..++++.. ++.|.++.+++ +..............+.++.+.+. ..+++++. .++.+.+|.++.
T Consensus 89 ~~~s~dg~~l~~~~~~~~~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~s~d------g~~l~~~~~~~~~v~~~d~~~ 160 (343)
T 1ri6_A 89 ISTDHQGQFVFVGSYNAGNVSVTRLED--GLPVGVVDVVEGLDGCHSANISPD------NRTLWVPALKQDRICLFTVSD 160 (343)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEEET--TEEEEEEEEECCCTTBCCCEECTT------SSEEEEEEGGGTEEEEEEECT
T ss_pred EEEcCCCCEEEEEecCCCeEEEEECCC--CccccccccccCCCCceEEEECCC------CCEEEEecCCCCEEEEEEecC
Confidence 333556667777765 77899888852 211122223334455666777542 35677777 799999999975
Q ss_pred CCceeEee--EEe--cCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeCCCCcc
Q psy14552 196 QDCLKQKN--LQG--LPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDL 262 (290)
Q Consensus 196 ~~~l~~~~--~~~--L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~~~~~l 262 (290)
...+.... ... .+..|+.+.+.. .+...+..+..+|.+.-|.++..++.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~p-----------------dg~~l~~~~~~~~~i~~~~~~~~~g~~ 214 (343)
T 1ri6_A 161 DGHLVAQDPAEVTTVEGAGPRHMVFHP-----------------NEQYAYCVNELNSSVDVWELKDPHGNI 214 (343)
T ss_dssp TSCEEEEEEEEEECSTTCCEEEEEECT-----------------TSSEEEEEETTTTEEEEEESSCTTSCC
T ss_pred CCceeeecccccccCCCCCcceEEECC-----------------CCCEEEEEeCCCCEEEEEEecCCCCcE
Confidence 34444332 222 234566654431 233323444588888888876655544
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.22 Score=46.04 Aligned_cols=115 Identities=8% Similarity=0.095 Sum_probs=69.2
Q ss_pred EeCCCEE-EEEEeCCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCce
Q psy14552 121 AVNQRQI-VIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCL 199 (290)
Q Consensus 121 s~~~~~l-~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l 199 (290)
+.++..+ +.+..|+.|+++.+...++.....+.....+..|.++++.+. ..+|++|..+|.+..|.+......
T Consensus 111 s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~------~~~l~~~~~~g~v~~~~~~~~~~~ 184 (450)
T 2vdu_B 111 TSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAED------DTTVIIADKFGDVYSIDINSIPEE 184 (450)
T ss_dssp CTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTT------SSEEEEEETTSEEEEEETTSCCCS
T ss_pred cCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCC------CCEEEEEeCCCcEEEEecCCcccc
Confidence 3455665 556568999999998311332222222356788999998743 478999999999999988543221
Q ss_pred e-EeeE-EecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEe
Q psy14552 200 K-QKNL-QGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 200 ~-~~~~-~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d 256 (290)
. .... ..-.....++.... + ..+..+|+.|-.||.+.-|.+.
T Consensus 185 ~~~~~~~~~h~~~v~~~~~sp---~------------~~~~~~l~s~~~d~~i~vwd~~ 228 (450)
T 2vdu_B 185 KFTQEPILGHVSMLTDVHLIK---D------------SDGHQFIITSDRDEHIKISHYP 228 (450)
T ss_dssp SCCCCCSEECSSCEEEEEEEE---C------------TTSCEEEEEEETTSCEEEEEES
T ss_pred cccceeeecccCceEEEEEcC---C------------CCCCcEEEEEcCCCcEEEEECC
Confidence 1 1000 01112334444442 0 0124578899999998888764
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.3 Score=44.45 Aligned_cols=153 Identities=12% Similarity=0.155 Sum_probs=89.3
Q ss_pred EEEEeec--CceEEEEeeCCeEEEEEecCCCceec-C-CCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeee
Q psy14552 79 IVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKE-S-DKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECS 152 (290)
Q Consensus 79 Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~-~-~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~ 152 (290)
|.+++.+ +.+++.+..+|.|..+.+........ . ....+.+. +.++..++.+..|++|++..+.. +. ..
T Consensus 126 v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~--~~---~~ 200 (393)
T 1erj_A 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT--GQ---CS 200 (393)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--TE---EE
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCC--Ce---eE
Confidence 5555554 56777777888888776543211111 1 12224333 34566788888899999998765 32 12
Q ss_pred eeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEec--CCcceEEEEEEecCCCCCCCCCC
Q psy14552 153 ETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGL--PDLAESLVMIEMGASDPTSSDEP 230 (290)
Q Consensus 153 ~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L--~~~p~Sl~~~~~~~~~~~~~~~~ 230 (290)
........+.++++.+.+ ..++++|..||.+.+|.+.....+........ ..-...+.-+.+.
T Consensus 201 ~~~~~~~~v~~~~~~~~~-----~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~---------- 265 (393)
T 1erj_A 201 LTLSIEDGVTTVAVSPGD-----GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT---------- 265 (393)
T ss_dssp EEEECSSCEEEEEECSTT-----CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEEC----------
T ss_pred EEEEcCCCcEEEEEECCC-----CCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEEC----------
Confidence 234566778888886532 46899999999999999764332322211100 1111223333331
Q ss_pred CCCccCCceEEEEEecCceEEEEEEe
Q psy14552 231 AGPVTLGNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 231 ~~~~~~~~~~L~iGl~dG~l~~~~~d 256 (290)
....+|+.|-.||.+.-+.+.
T Consensus 266 -----~~g~~l~s~s~d~~v~~wd~~ 286 (393)
T 1erj_A 266 -----RDGQSVVSGSLDRSVKLWNLQ 286 (393)
T ss_dssp -----TTSSEEEEEETTSEEEEEEC-
T ss_pred -----CCCCEEEEEeCCCEEEEEECC
Confidence 123458899999998888764
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.39 Score=42.84 Aligned_cols=153 Identities=14% Similarity=0.065 Sum_probs=91.2
Q ss_pred CCceEEEEeecC---ceEEEEeeCCeEEEEEecCCCceec---CCC--ceE--EEEEeCCCEEEEEEeCCeEEEEEEcCC
Q psy14552 75 DKKKIVRCAVNQ---RQIVIALQGGRLIYFEMHPVSDKKE---SDK--KKI--VRCAVNQRQIVIALQGGRLIYFEMHPE 144 (290)
Q Consensus 75 ~~~~Iv~as~n~---~qv~ial~~g~i~~~~~~~~~~~~~---~~~--~~I--i~as~~~~~l~Val~~~~i~~l~l~~~ 144 (290)
....|.+++.+. .+++.+..+|.|....+.. ..+.. ..+ ..+ ++.+.++..++.+..|+.|+++.+..
T Consensus 117 h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~- 194 (383)
T 3ei3_B 117 PGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG- 194 (383)
T ss_dssp TTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS-
T ss_pred cCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC-
Confidence 345666776653 6777777788888877653 22211 111 113 22256677888888899999998743
Q ss_pred CCCceeeeeee-ecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCc-eeEeeEEecCCcceEEEEEEecCC
Q psy14552 145 TGILDECSETI-QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDC-LKQKNLQGLPDLAESLVMIEMGAS 222 (290)
Q Consensus 145 ~~~l~~~~~~~-~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~-l~~~~~~~L~~~p~Sl~~~~~~~~ 222 (290)
. .. ... .-...|.++++.+. +..+++.|..||.+.+|.+..... -..+....-.....++... .
T Consensus 195 --~--~~-~~~~~h~~~v~~~~~~~~-----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s---~- 260 (383)
T 3ei3_B 195 --H--EI-FKEKLHKAKVTHAEFNPR-----CDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFN---P- 260 (383)
T ss_dssp --C--EE-EEEECSSSCEEEEEECSS-----CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEEC---T-
T ss_pred --C--EE-EEeccCCCcEEEEEECCC-----CCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEc---C-
Confidence 1 11 122 24567888988753 134899999999999999864210 1111111222223333322 1
Q ss_pred CCCCCCCCCCCccCCceEEEEEecCceEEEEEEe
Q psy14552 223 DPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d 256 (290)
....+|+.|-.||.+.-|.+.
T Consensus 261 -------------~~~~~l~~~~~d~~i~iwd~~ 281 (383)
T 3ei3_B 261 -------------TDSTKLLTTDQRNEIRVYSSY 281 (383)
T ss_dssp -------------TTSCEEEEEESSSEEEEEETT
T ss_pred -------------CCCCEEEEEcCCCcEEEEECC
Confidence 023468899999999888653
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.24 Score=44.62 Aligned_cols=158 Identities=9% Similarity=0.096 Sum_probs=86.8
Q ss_pred ceEEEEeec--CceEEEEeeCCeEEEEEecCCCceec-CCCc-eE--EEEEeCCC-EEEEEEeCCeEEEEEEcCCCCCce
Q psy14552 77 KKIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKE-SDKK-KI--VRCAVNQR-QIVIALQGGRLIYFEMHPETGILD 149 (290)
Q Consensus 77 ~~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~-~~~~-~I--i~as~~~~-~l~Val~~~~i~~l~l~~~~~~l~ 149 (290)
..|.+++.+ ..+++.+-.+|.|..+.+........ ..+. .+ ++.+.++. .++.+..|+.|+++.+.. +...
T Consensus 140 ~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~--~~~~ 217 (357)
T 4g56_B 140 DIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK--PKPA 217 (357)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTS--SSCB
T ss_pred CCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCC--Ccee
Confidence 356666554 56777777888888776653221111 1111 23 22233333 466666789999887654 2211
Q ss_pred eeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCC
Q psy14552 150 ECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDE 229 (290)
Q Consensus 150 ~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~ 229 (290)
.......-...+.++++.+. ...++++|..|+.|.+|.+.....+... ....- .+.-+.+..
T Consensus 218 ~~~~~~~~~~~v~~v~~sp~-----~~~~la~g~~d~~i~~wd~~~~~~~~~~---~~~~~--~v~~l~~sp-------- 279 (357)
T 4g56_B 218 TRIDFCASDTIPTSVTWHPE-----KDDTFACGDETGNVSLVNIKNPDSAQTS---AVHSQ--NITGLAYSY-------- 279 (357)
T ss_dssp CBCCCTTCCSCEEEEEECTT-----STTEEEEEESSSCEEEEESSCGGGCEEE---CCCSS--CEEEEEECS--------
T ss_pred eeeeeccccccccchhhhhc-----ccceEEEeecccceeEEECCCCcEeEEE---eccce--eEEEEEEcC--------
Confidence 11111123456778888643 2568999999999999998643222221 11111 222223311
Q ss_pred CCCCccCCceEEEEEecCceEEEEEEeCCCCcc
Q psy14552 230 PAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDL 262 (290)
Q Consensus 230 ~~~~~~~~~~~L~iGl~dG~l~~~~~d~~~~~l 262 (290)
.+..+|..|-.||.+.-+ |..++++
T Consensus 280 ------~~~~~lasgs~D~~i~iw--d~~~~~~ 304 (357)
T 4g56_B 280 ------HSSPFLASISEDCTVAVL--DADFSEV 304 (357)
T ss_dssp ------SSSCCEEEEETTSCEEEE--CTTSCEE
T ss_pred ------CCCCEEEEEeCCCEEEEE--ECCCCcE
Confidence 233457788899988766 4455544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.76 Score=45.35 Aligned_cols=152 Identities=12% Similarity=0.072 Sum_probs=88.8
Q ss_pred EEEEee--cCceEEEEeeCCeEEEEEecCCCceec-C-CCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeee
Q psy14552 79 IVRCAV--NQRQIVIALQGGRLIYFEMHPVSDKKE-S-DKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECS 152 (290)
Q Consensus 79 Iv~as~--n~~qv~ial~~g~i~~~~~~~~~~~~~-~-~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~ 152 (290)
|.+.+. ++++++.+..+|.|..+.+........ . ....+.+. +.++..++.+..|+.|+++.++.. ......
T Consensus 58 v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~-~~~~~~- 135 (814)
T 3mkq_A 58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN-WALEQT- 135 (814)
T ss_dssp EEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGT-SEEEEE-
T ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC-ceEEEE-
Confidence 444443 466788888889888877653322111 1 11223222 456667888888999999988752 122111
Q ss_pred eeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCC
Q psy14552 153 ETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAG 232 (290)
Q Consensus 153 ~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~ 232 (290)
...-+..+.++++.+. ...++++|..||.|.+|.+.......... ..-......+....
T Consensus 136 -~~~~~~~v~~~~~~p~-----~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~-------------- 194 (814)
T 3mkq_A 136 -FEGHEHFVMCVAFNPK-----DPSTFASGCLDRTVKVWSLGQSTPNFTLT-TGQERGVNYVDYYP-------------- 194 (814)
T ss_dssp -EECCSSCEEEEEEETT-----EEEEEEEEETTSEEEEEETTCSSCSEEEE-CCCTTCCCEEEECC--------------
T ss_pred -EcCCCCcEEEEEEEcC-----CCCEEEEEeCCCeEEEEECCCCcceeEEe-cCCCCCEEEEEEEE--------------
Confidence 1124567889988752 25689999999999999986432222211 00001122222221
Q ss_pred CccCCceEEEEEecCceEEEEEE
Q psy14552 233 PVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 233 ~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
.....+|++|..||.+.-|.+
T Consensus 195 --~~~~~~l~~~~~dg~i~~~d~ 215 (814)
T 3mkq_A 195 --LPDKPYMITASDDLTIKIWDY 215 (814)
T ss_dssp --STTCCEEEEECTTSEEEEEET
T ss_pred --CCCCCEEEEEeCCCEEEEEEC
Confidence 013446999999998887754
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.37 Score=41.80 Aligned_cols=154 Identities=14% Similarity=0.156 Sum_probs=88.5
Q ss_pred eEEEEeec--Cc-eEEEEeeCCeEEEEEe-cCCCceecC---CCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCc
Q psy14552 78 KIVRCAVN--QR-QIVIALQGGRLIYFEM-HPVSDKKES---DKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGIL 148 (290)
Q Consensus 78 ~Iv~as~n--~~-qv~ial~~g~i~~~~~-~~~~~~~~~---~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l 148 (290)
.|.+++.+ +. +++.+..+|.|..+.+ ......... ....|.+. +. +..++.+..|+.|+++.+....+.-
T Consensus 58 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~ 136 (342)
T 1yfq_A 58 PLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGV 136 (342)
T ss_dssp CEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBC
T ss_pred ceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccc
Confidence 45555443 55 7888888899988876 433211111 22234333 34 6678888889999998765300000
Q ss_pred ----eeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCC-CCceeEeeEEecCCcceEEEEEEecCCC
Q psy14552 149 ----DECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAP-QDCLKQKNLQGLPDLAESLVMIEMGASD 223 (290)
Q Consensus 149 ----~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~-~~~l~~~~~~~L~~~p~Sl~~~~~~~~~ 223 (290)
.+.......+..+.++++.+ ..+++|..||.+.+|.+.. ...............+.++...
T Consensus 137 ~~~~~~~~~~~~~~~~v~~~~~~~--------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~------ 202 (342)
T 1yfq_A 137 IAVKNLNSNNTKVKNKIFTMDTNS--------SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALL------ 202 (342)
T ss_dssp EEEEESCSSSSSSCCCEEEEEECS--------SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEEC------
T ss_pred ccccCCeeeEEeeCCceEEEEecC--------CcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEEC------
Confidence 01112233677888888852 2299999999999999864 2211111111122223333222
Q ss_pred CCCCCCCCCCccC-CceEEEEEecCceEEEEEEeCC
Q psy14552 224 PTSSDEPAGPVTL-GNLYLYVGLQNGALLRMVVDQT 258 (290)
Q Consensus 224 ~~~~~~~~~~~~~-~~~~L~iGl~dG~l~~~~~d~~ 258 (290)
. ...++++|-.||.+.-+.++..
T Consensus 203 ------------~~~~~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 203 ------------PKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp ------------SGGGCEEEEEETTSEEEEEECCTT
T ss_pred ------------CCCCCEEEEEecCCcEEEEEEcCC
Confidence 1 2346999999999988877654
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.56 Score=43.30 Aligned_cols=112 Identities=9% Similarity=0.085 Sum_probs=67.9
Q ss_pred eEEEEeec--CceEEEEeeCCeEEEEEecCCCcee----c-C-CCceE--EEEEeC---CCEEEEEEeCCeEEEEEEcCC
Q psy14552 78 KIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKK----E-S-DKKKI--VRCAVN---QRQIVIALQGGRLIYFEMHPE 144 (290)
Q Consensus 78 ~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~----~-~-~~~~I--i~as~~---~~~l~Val~~~~i~~l~l~~~ 144 (290)
.|.+++.+ +.+++.+..+|.+..+.+....... . . ....+ ++.+.+ +..++.|..|+.|+++.+..
T Consensus 151 ~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~- 229 (450)
T 2vdu_B 151 RPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ- 229 (450)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC-
T ss_pred CceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC-
Confidence 34444443 5677777778888777664322111 0 0 11123 222455 45677787899999999875
Q ss_pred CCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCce
Q psy14552 145 TGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCL 199 (290)
Q Consensus 145 ~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l 199 (290)
+...... ...-...|.++++. . ..+|+.|..||.|.+|.+.....+
T Consensus 230 -~~~~~~~-~~~h~~~v~~~~~s-d------~~~l~s~~~d~~v~vwd~~~~~~~ 275 (450)
T 2vdu_B 230 -CFIVDKW-LFGHKHFVSSICCG-K------DYLLLSAGGDDKIFAWDWKTGKNL 275 (450)
T ss_dssp -TTCEEEE-CCCCSSCEEEEEEC-S------TTEEEEEESSSEEEEEETTTCCEE
T ss_pred -Cceeeee-ecCCCCceEEEEEC-C------CCEEEEEeCCCeEEEEECCCCcEe
Confidence 3221110 11234678888886 2 468999999999999998754333
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.15 Score=46.10 Aligned_cols=150 Identities=11% Similarity=0.107 Sum_probs=84.0
Q ss_pred EEEEee-cCceEEEEeeCCeEEEEEecCCCc-----eecCCCc-eEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCce
Q psy14552 79 IVRCAV-NQRQIVIALQGGRLIYFEMHPVSD-----KKESDKK-KIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILD 149 (290)
Q Consensus 79 Iv~as~-n~~qv~ial~~g~i~~~~~~~~~~-----~~~~~~~-~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~ 149 (290)
|..++. .+.+++.+..+|.|....+..... +....+. .|.+. +.++..++.|..|+.|+++.+.. +..
T Consensus 97 V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~--~~~- 173 (357)
T 4g56_B 97 VTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ--KAV- 173 (357)
T ss_dssp EEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT--TEE-
T ss_pred EEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC--CcE-
Confidence 554443 367788888888887665543211 1111221 23222 45667788888899999998764 321
Q ss_pred eeeeeee-cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCC
Q psy14552 150 ECSETIQ-MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSD 228 (290)
Q Consensus 150 ~~~~~~~-l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~ 228 (290)
...+. -...|.++++.+. ...+++.|..||.|.+|.+.............-...+.++....
T Consensus 174 --~~~~~~h~~~v~~v~~s~~-----~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp---------- 236 (357)
T 4g56_B 174 --LKSYNAHSSEVNCVAACPG-----KDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHP---------- 236 (357)
T ss_dssp --EEEECCCSSCEEEEEECTT-----CSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECT----------
T ss_pred --EEEEcCCCCCEEEEEEccC-----CCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhh----------
Confidence 12222 3467888888643 24577888899999999875432222211001112233433221
Q ss_pred CCCCCccCCceEEEEEecCceEEEEEE
Q psy14552 229 EPAGPVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 229 ~~~~~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
.+..+|.+|-.||.+.-|.+
T Consensus 237 -------~~~~~la~g~~d~~i~~wd~ 256 (357)
T 4g56_B 237 -------EKDDTFACGDETGNVSLVNI 256 (357)
T ss_dssp -------TSTTEEEEEESSSCEEEEES
T ss_pred -------cccceEEEeecccceeEEEC
Confidence 23345888999999877754
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.21 Score=44.87 Aligned_cols=148 Identities=15% Similarity=0.192 Sum_probs=86.1
Q ss_pred EEEEeec--CceEEEEeeCCeEEEEEecCCCceec--CCCceEEEEE--e--CCCEEEEEEeCCeEEEEEEcCCCCCcee
Q psy14552 79 IVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKE--SDKKKIVRCA--V--NQRQIVIALQGGRLIYFEMHPETGILDE 150 (290)
Q Consensus 79 Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~--~~~~~Ii~as--~--~~~~l~Val~~~~i~~l~l~~~~~~l~~ 150 (290)
|..++.. +.+++.+-.+|.|....+........ .....+.+.+ . ++..++.|..|+.|+++.+.. +..
T Consensus 157 v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~--~~~-- 232 (354)
T 2pbi_B 157 LSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS--GQC-- 232 (354)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT--CCE--
T ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC--CcE--
Confidence 4444443 55777787888888776653221111 1112232222 2 345688888899999998765 322
Q ss_pred eeeeee-cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCC
Q psy14552 151 CSETIQ-MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDE 229 (290)
Q Consensus 151 ~~~~~~-l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~ 229 (290)
..... -...|.++++.+. ..+++.|..||++++|.+.....+... ........+..+.+.
T Consensus 233 -~~~~~~h~~~v~~v~~~p~------~~~l~s~s~D~~v~lwd~~~~~~~~~~---~~~~~~~~~~~~~~s--------- 293 (354)
T 2pbi_B 233 -VQAFETHESDVNSVRYYPS------GDAFASGSDDATCRLYDLRADREVAIY---SKESIIFGASSVDFS--------- 293 (354)
T ss_dssp -EEEECCCSSCEEEEEECTT------SSEEEEEETTSCEEEEETTTTEEEEEE---CCTTCCSCEEEEEEC---------
T ss_pred -EEEecCCCCCeEEEEEeCC------CCEEEEEeCCCeEEEEECCCCcEEEEE---cCCCcccceeEEEEe---------
Confidence 12222 3567888888643 468999999999999998643222211 111111122222331
Q ss_pred CCCCccCCceEEEEEecCceEEEEEE
Q psy14552 230 PAGPVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 230 ~~~~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
....+|+.|-.||.+.-|.+
T Consensus 294 ------~~g~~l~~g~~d~~i~vwd~ 313 (354)
T 2pbi_B 294 ------LSGRLLFAGYNDYTINVWDV 313 (354)
T ss_dssp ------TTSSEEEEEETTSCEEEEET
T ss_pred ------CCCCEEEEEECCCcEEEEEC
Confidence 12346999999999988754
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.54 Score=42.14 Aligned_cols=102 Identities=8% Similarity=0.063 Sum_probs=63.0
Q ss_pred ceEEEEeeCCeEEEEEecCCCceec--CCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCccee
Q psy14552 87 RQIVIALQGGRLIYFEMHPVSDKKE--SDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVL 162 (290)
Q Consensus 87 ~qv~ial~~g~i~~~~~~~~~~~~~--~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~ 162 (290)
.+++.+-.+|.|....+........ .....+.+. +.++..++.|..|++|+++.+.. +..............+.
T Consensus 211 ~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~--~~~~~~~~~~~~~~~~~ 288 (354)
T 2pbi_B 211 NTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRA--DREVAIYSKESIIFGAS 288 (354)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--TEEEEEECCTTCCSCEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCC--CcEEEEEcCCCccccee
Confidence 5677777788888777653221111 112224333 44567788888899999998765 21111111111234577
Q ss_pred EEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCC
Q psy14552 163 CMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQ 196 (290)
Q Consensus 163 ~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~ 196 (290)
++++.+. ..+|++|..||.+.+|.+...
T Consensus 289 ~~~~s~~------g~~l~~g~~d~~i~vwd~~~~ 316 (354)
T 2pbi_B 289 SVDFSLS------GRLLFAGYNDYTINVWDVLKG 316 (354)
T ss_dssp EEEECTT------SSEEEEEETTSCEEEEETTTC
T ss_pred EEEEeCC------CCEEEEEECCCcEEEEECCCC
Confidence 7777642 579999999999999998543
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.53 Score=41.72 Aligned_cols=148 Identities=14% Similarity=0.201 Sum_probs=87.5
Q ss_pred EEEEee-cCceEEEEeeCCeEEEEEecCCCceec-C-CCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeee
Q psy14552 79 IVRCAV-NQRQIVIALQGGRLIYFEMHPVSDKKE-S-DKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECSE 153 (290)
Q Consensus 79 Iv~as~-n~~qv~ial~~g~i~~~~~~~~~~~~~-~-~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~ 153 (290)
|.++.. .+.+++.+..+|.|....+........ . ....+.+. +.++..++.|..|+.|++..+.. +... .
T Consensus 146 v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~--~~~~---~ 220 (340)
T 1got_B 146 LSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE--GMCR---Q 220 (340)
T ss_dssp EEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--CSEE---E
T ss_pred EEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC--CeeE---E
Confidence 444433 467777777788888776543211111 1 11223333 34555677777899999998765 2211 1
Q ss_pred ee-ecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCC
Q psy14552 154 TI-QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAG 232 (290)
Q Consensus 154 ~~-~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~ 232 (290)
.. .-...|.++++.+. ..+++.|..||.+.+|.+.....+.. .........+.-+.+.
T Consensus 221 ~~~~h~~~v~~v~~~p~------~~~l~s~s~d~~v~iwd~~~~~~~~~---~~~~~~~~~v~~~~~s------------ 279 (340)
T 1got_B 221 TFTGHESDINAICFFPN------GNAFATGSDDATCRLFDLRADQELMT---YSHDNIICGITSVSFS------------ 279 (340)
T ss_dssp EECCCSSCEEEEEECTT------SSEEEEEETTSCEEEEETTTTEEEEE---ECCTTCCSCEEEEEEC------------
T ss_pred EEcCCcCCEEEEEEcCC------CCEEEEEcCCCcEEEEECCCCcEEEE---EccCCcccceEEEEEC------------
Confidence 22 23567888888653 46899999999999999864322221 2222222233333432
Q ss_pred CccCCceEEEEEecCceEEEEEE
Q psy14552 233 PVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 233 ~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
....+|..|..||.+.-|.+
T Consensus 280 ---~~g~~l~~g~~d~~i~vwd~ 299 (340)
T 1got_B 280 ---KSGRLLLAGYDDFNCNVWDA 299 (340)
T ss_dssp ---TTSSEEEEEETTSEEEEEET
T ss_pred ---CCCCEEEEECCCCeEEEEEc
Confidence 12346999999999887754
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.16 Score=45.50 Aligned_cols=167 Identities=10% Similarity=0.107 Sum_probs=90.3
Q ss_pred EEEEeecCCccCCCC-eEEEEeeCCCeEEEEe-cCCeEEEeecCcce--eeeccCCCCCceEEEEeec--CceEEEEeeC
Q psy14552 22 TVEEVSGSGFYGTTP-TLCCSAMGDNSIVQVY-PDGIRHIGAKNTTW--KVSDKKESDKKKIVRCAVN--QRQIVIALQG 95 (290)
Q Consensus 22 ~~~e~~~~gf~~~~~-Ti~~~~~~~~~ivQVt-~~~v~l~~~~~~~~--~~~~~~~~~~~~Iv~as~n--~~qv~ial~~ 95 (290)
.+.++....|.++.+ .+++|.......+-.. ...|++.+..+... .+. .......|.+.+.+ ..+++.+..+
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d 88 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIA--SLQVDSKFNDLDWSHNNKIIAGALDN 88 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSC--CCCCSSCEEEEEECSSSSCEEEEESS
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEE--EEecCCceEEEEECCCCCeEEEEccC
Confidence 345566677888866 6666643221110001 22355554332210 011 11234456666654 5677777788
Q ss_pred CeEEEEEecCC---C-ceec-C-CCceEEEE--EeC-CCEEEEEEeCCeEEEEEEcCCCC-----CceeeeeeeecCcce
Q psy14552 96 GRLIYFEMHPV---S-DKKE-S-DKKKIVRC--AVN-QRQIVIALQGGRLIYFEMHPETG-----ILDECSETIQMESEV 161 (290)
Q Consensus 96 g~i~~~~~~~~---~-~~~~-~-~~~~Ii~a--s~~-~~~l~Val~~~~i~~l~l~~~~~-----~l~~~~~~~~l~~ei 161 (290)
|.|..+.+... . .... . ....+.+. +.+ +..++.+..|+.|+++.+..... ..............|
T Consensus 89 g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 168 (416)
T 2pm9_A 89 GSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEV 168 (416)
T ss_dssp SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCC
T ss_pred CeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCe
Confidence 99988877541 1 1111 1 11123222 333 55677777799999988765210 110110011245678
Q ss_pred eEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCC
Q psy14552 162 LCMALSNAPSGEQMSRFLAVGLADNTVRLISLAP 195 (290)
Q Consensus 162 ~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~ 195 (290)
.++++.+. ...++++|..||.+.+|.+..
T Consensus 169 ~~~~~~~~-----~~~~l~~~~~dg~v~iwd~~~ 197 (416)
T 2pm9_A 169 ISLAWNQS-----LAHVFASAGSSNFASIWDLKA 197 (416)
T ss_dssp CEEEECSS-----CTTEEEEESSSSCEEEEETTT
T ss_pred eEEEeCCC-----CCcEEEEEcCCCCEEEEECCC
Confidence 88888643 257899999999999999864
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.45 Score=43.32 Aligned_cols=148 Identities=9% Similarity=0.042 Sum_probs=80.9
Q ss_pred ceEEEEeeCCeEEEEEecC---CC----ceecCCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCC-CCCceeeee---
Q psy14552 87 RQIVIALQGGRLIYFEMHP---VS----DKKESDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPE-TGILDECSE--- 153 (290)
Q Consensus 87 ~qv~ial~~g~i~~~~~~~---~~----~~~~~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~-~~~l~~~~~--- 153 (290)
.+++.+-.+|.|....+.. .. .+.......|.+. +.++..++.|..|+.|+++.++.+ ++.......
T Consensus 77 ~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 156 (437)
T 3gre_A 77 PYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCEC 156 (437)
T ss_dssp CEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEE
T ss_pred CEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccce
Confidence 5677777788888777643 11 1111112234333 345667888888999999988521 122211111
Q ss_pred --eee-----cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCC
Q psy14552 154 --TIQ-----MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTS 226 (290)
Q Consensus 154 --~~~-----l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~ 226 (290)
... ....+.++.....+ ...++++|..||.|.+|.+.....+.......-.....++.+.
T Consensus 157 i~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s--------- 223 (437)
T 3gre_A 157 IRKINLKNFGKNEYAVRMRAFVNE----EKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICID--------- 223 (437)
T ss_dssp EEEEEGGGGSSCCCEEEEEEEECS----SCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEEC---------
T ss_pred eEEEEccCcccccCceEEEEEEcC----CCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEEC---------
Confidence 111 12334444433222 2578999999999999998643333322110001222333321
Q ss_pred CCCCCCCccCCceEEEEEecCceEEEEEEe
Q psy14552 227 SDEPAGPVTLGNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 227 ~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d 256 (290)
....+|+.|-.||.+.-|.+.
T Consensus 224 ---------~~~~~l~s~~~dg~i~iwd~~ 244 (437)
T 3gre_A 224 ---------EECCVLILGTTRGIIDIWDIR 244 (437)
T ss_dssp ---------TTSCEEEEEETTSCEEEEETT
T ss_pred ---------CCCCEEEEEcCCCeEEEEEcC
Confidence 124569999999998877653
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.63 Score=41.90 Aligned_cols=157 Identities=10% Similarity=0.085 Sum_probs=84.1
Q ss_pred eEEEEeec--CceEEEEeeCCeEEEEEecCCCceec-CCC-ceEEEE--EeCCCE-EEEEEeCCeEEEEEEcCCCCCcee
Q psy14552 78 KIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKE-SDK-KKIVRC--AVNQRQ-IVIALQGGRLIYFEMHPETGILDE 150 (290)
Q Consensus 78 ~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~-~~~-~~Ii~a--s~~~~~-l~Val~~~~i~~l~l~~~~~~l~~ 150 (290)
.|.+++.+ ..+++.+-.+|.|....+........ ..+ ..+.+. +.++.. ++-+..|++|++..+.. +....
T Consensus 129 ~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~--~~~~~ 206 (344)
T 4gqb_B 129 IVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC--PKPAS 206 (344)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTS--SSCEE
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccc--cceee
Confidence 45555554 56777777788887776643221111 111 223222 334433 55566799999998764 22111
Q ss_pred eeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCC
Q psy14552 151 CSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEP 230 (290)
Q Consensus 151 ~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~ 230 (290)
.+....-...+.++++.+. ...+++.|..||.|.+|.+.....+.... .-.....++ .+..
T Consensus 207 ~~~~~~~~~~~~~~~~~p~-----~~~~l~sg~~dg~v~~wd~~~~~~~~~~~--~h~~~v~~v---~fsp--------- 267 (344)
T 4gqb_B 207 QIGCSAPGYLPTSLAWHPQ-----QSEVFVFGDENGTVSLVDTKSTSCVLSSA--VHSQCVTGL---VFSP--------- 267 (344)
T ss_dssp ECC----CCCEEEEEECSS-----CTTEEEEEETTSEEEEEESCC--CCEEEE--CCSSCEEEE---EECS---------
T ss_pred eeecceeeccceeeeecCC-----CCcceEEeccCCcEEEEECCCCcEEEEEc--CCCCCEEEE---EEcc---------
Confidence 1111122345777877643 25788999999999999986433332221 111122333 2211
Q ss_pred CCCccCCceEEEEEecCceEEEEEEeCCCCcc
Q psy14552 231 AGPVTLGNLYLYVGLQNGALLRMVVDQTSGDL 262 (290)
Q Consensus 231 ~~~~~~~~~~L~iGl~dG~l~~~~~d~~~~~l 262 (290)
.+..+|..|-.||.+.-+ |..++++
T Consensus 268 -----~g~~~lasgs~D~~i~vw--d~~~~~~ 292 (344)
T 4gqb_B 268 -----HSVPFLASLSEDCSLAVL--DSSLSEL 292 (344)
T ss_dssp -----SSSCCEEEEETTSCEEEE--CTTCCEE
T ss_pred -----CCCeEEEEEeCCCeEEEE--ECCCCcE
Confidence 233457778889987665 4455543
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=96.24 E-value=0.55 Score=41.15 Aligned_cols=151 Identities=9% Similarity=-0.030 Sum_probs=92.7
Q ss_pred CceEEEEeec--CceEEEEeeCCeEEEEEecCCCceec------CCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCC-
Q psy14552 76 KKKIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKE------SDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPE- 144 (290)
Q Consensus 76 ~~~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~------~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~- 144 (290)
...|.+++.+ ..+++.+..+|.+..+.++....|.. +....+.+. +.++..++.+..|+.|+++.+...
T Consensus 96 ~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 175 (372)
T 1k8k_C 96 NRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKE 175 (372)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTT
T ss_pred CCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccc
Confidence 4456666554 66788888889998877765443211 122234333 345667888888999999986410
Q ss_pred ---------------CCCceeeeeee-ecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecC
Q psy14552 145 ---------------TGILDECSETI-QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLP 208 (290)
Q Consensus 145 ---------------~~~l~~~~~~~-~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~ 208 (290)
.+. ..... .-...+.++.+.+. ..++++|..||.+.+|.+.....+... ...
T Consensus 176 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~d~~i~i~d~~~~~~~~~~---~~~ 243 (372)
T 1k8k_C 176 VEERPAPTPWGSKMPFGE---LMFESSSSCGWVHGVCFSAN------GSRVAWVSHDSTVCLADADKKMAVATL---ASE 243 (372)
T ss_dssp TSCCCCCBTTBSCCCTTC---EEEECCCCSSCEEEEEECSS------SSEEEEEETTTEEEEEEGGGTTEEEEE---ECS
T ss_pred ccccccccccccccchhh---heEecCCCCCeEEEEEECCC------CCEEEEEeCCCEEEEEECCCCceeEEE---ccC
Confidence 011 11112 23456888888642 468999999999999998644333332 222
Q ss_pred C-cceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeC
Q psy14552 209 D-LAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQ 257 (290)
Q Consensus 209 ~-~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~ 257 (290)
. ...++.... ...+|.+| .||.+.-|.++.
T Consensus 244 ~~~v~~~~~~~------------------~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 244 TLPLLAVTFIT------------------ESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp SCCEEEEEEEE------------------TTEEEEEE-TTSSCEEEEEET
T ss_pred CCCeEEEEEec------------------CCCEEEEE-eCCeEEEEEccC
Confidence 2 234444432 23468888 999999998866
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.71 Score=42.31 Aligned_cols=147 Identities=11% Similarity=0.112 Sum_probs=87.8
Q ss_pred ceEEEEeec----CceEEEEeeCCeEEEEEecCCCcee------------------------cCCCceEEEE-EeCCCEE
Q psy14552 77 KKIVRCAVN----QRQIVIALQGGRLIYFEMHPVSDKK------------------------ESDKKKIVRC-AVNQRQI 127 (290)
Q Consensus 77 ~~Iv~as~n----~~qv~ial~~g~i~~~~~~~~~~~~------------------------~~~~~~Ii~a-s~~~~~l 127 (290)
..|.+.+.+ ..+++.+..+|.|..+.+....... ...+..-+.+ +.++..+
T Consensus 204 ~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l 283 (464)
T 3v7d_B 204 STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIV 283 (464)
T ss_dssp SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEE
T ss_pred CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEE
Confidence 445554443 3677778888888887765322110 0011111233 5566778
Q ss_pred EEEEeCCeEEEEEEcCCCCCceeeeeee-ecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEe
Q psy14552 128 VIALQGGRLIYFEMHPETGILDECSETI-QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQG 206 (290)
Q Consensus 128 ~Val~~~~i~~l~l~~~~~~l~~~~~~~-~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~ 206 (290)
+.+..|+.|+++.+.. +. . .... .-...|.++.+.+. ..++++|..||.+.+|.+.....+..
T Consensus 284 ~~~~~d~~i~vwd~~~--~~--~-~~~~~~~~~~v~~~~~~~~------~~~l~sg~~dg~i~vwd~~~~~~~~~----- 347 (464)
T 3v7d_B 284 VSGSYDNTLIVWDVAQ--MK--C-LYILSGHTDRIYSTIYDHE------RKRCISASMDTTIRIWDLENGELMYT----- 347 (464)
T ss_dssp EEEETTSCEEEEETTT--TE--E-EEEECCCSSCEEEEEEETT------TTEEEEEETTSCEEEEETTTTEEEEE-----
T ss_pred EEEeCCCeEEEEECCC--Cc--E-EEEecCCCCCEEEEEEcCC------CCEEEEEeCCCcEEEEECCCCcEEEE-----
Confidence 8888899999998765 22 1 1122 23567888888643 46899999999999999864322222
Q ss_pred cCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEe
Q psy14552 207 LPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 207 L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d 256 (290)
+..-...+..+.+ . ..+|+.|-.||.+.-+.+.
T Consensus 348 ~~~h~~~v~~~~~----------------~-~~~l~s~s~dg~v~vwd~~ 380 (464)
T 3v7d_B 348 LQGHTALVGLLRL----------------S-DKFLVSAAADGSIRGWDAN 380 (464)
T ss_dssp ECCCSSCEEEEEE----------------C-SSEEEEEETTSEEEEEETT
T ss_pred EeCCCCcEEEEEE----------------c-CCEEEEEeCCCcEEEEECC
Confidence 1111112222332 1 2369999999998877653
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.61 Score=41.50 Aligned_cols=152 Identities=12% Similarity=0.099 Sum_probs=86.5
Q ss_pred ceEEEEeec--CceEEEEeeCCeEEEEEecCCCcee----cCCC-ceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCC
Q psy14552 77 KKIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKK----ESDK-KKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGI 147 (290)
Q Consensus 77 ~~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~----~~~~-~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~ 147 (290)
..|.+++.+ ..+++.+-.+|.+.....+.. ++. ...+ ..+.+. +.++..++.+..|++|++..++.. ..
T Consensus 62 ~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~-~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~-~~ 139 (345)
T 3fm0_A 62 RTVRKVAWSPCGNYLASASFDATTCIWKKNQD-DFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEE-DE 139 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEECCC--EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTT-SC
T ss_pred CcEEEEEECCCCCEEEEEECCCcEEEEEccCC-CeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCC-CC
Confidence 345555554 556776767787776655422 111 1111 224333 455677888888999999998752 22
Q ss_pred ceeeeeee-ecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCC
Q psy14552 148 LDECSETI-QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTS 226 (290)
Q Consensus 148 l~~~~~~~-~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~ 226 (290)
. ...... .-...|.++.+.+. ..+|+.|..||.+.+|.+.... .... ..+..-...+.-+.+.
T Consensus 140 ~-~~~~~~~~h~~~v~~~~~~p~------~~~l~s~s~d~~i~~w~~~~~~-~~~~--~~~~~h~~~v~~l~~s------ 203 (345)
T 3fm0_A 140 Y-ECVSVLNSHTQDVKHVVWHPS------QELLASASYDDTVKLYREEEDD-WVCC--ATLEGHESTVWSLAFD------ 203 (345)
T ss_dssp E-EEEEEECCCCSCEEEEEECSS------SSCEEEEETTSCEEEEEEETTE-EEEE--EEECCCSSCEEEEEEC------
T ss_pred e-EEEEEecCcCCCeEEEEECCC------CCEEEEEeCCCcEEEEEecCCC-EEEE--EEecCCCCceEEEEEC------
Confidence 1 211112 13456888888643 4689999999999999976432 1111 1222111122223331
Q ss_pred CCCCCCCccCCceEEEEEecCceEEEEEE
Q psy14552 227 SDEPAGPVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 227 ~~~~~~~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
....+|..|-.||.+.-+..
T Consensus 204 ---------p~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 204 ---------PSGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp ---------TTSSEEEEEETTSCEEEEEE
T ss_pred ---------CCCCEEEEEeCCCeEEEecc
Confidence 12346888999999887765
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.63 Score=42.03 Aligned_cols=65 Identities=18% Similarity=0.199 Sum_probs=48.4
Q ss_pred EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeee-e-cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCC
Q psy14552 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETI-Q-MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQ 196 (290)
Q Consensus 121 s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~-~-l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~ 196 (290)
+.++..++.|..|++|+++.+.. ++ . +... . -...|.+++|.|. ..+|+.|..|++|++|.++++
T Consensus 278 Spdg~~lasgs~D~~V~iwd~~~--~~--~-~~~~~~gH~~~V~~v~fSpd------g~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 278 DMKGELAVLASNDNSIALVKLKD--LS--M-SKIFKQAHSFAITEVTISPD------STYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CTTSCEEEEEETTSCEEEEETTT--TE--E-EEEETTSSSSCEEEEEECTT------SCEEEEEETTSEEEEEECCTT
T ss_pred CCCCCceEEEcCCCEEEEEECCC--Cc--E-EEEecCcccCCEEEEEECCC------CCEEEEEeCCCeEEEEEcCCC
Confidence 45677799998999999998764 32 1 2222 1 2457999999753 479999999999999999753
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.55 Score=40.78 Aligned_cols=155 Identities=8% Similarity=0.066 Sum_probs=88.0
Q ss_pred ceEEEEeec--CceEEEEeeCCeEEEEEecCCCceec-CCCceEEEEE----eCCCEEEEEEeCCeEEEEEEcCCCCCce
Q psy14552 77 KKIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKE-SDKKKIVRCA----VNQRQIVIALQGGRLIYFEMHPETGILD 149 (290)
Q Consensus 77 ~~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~-~~~~~Ii~as----~~~~~l~Val~~~~i~~l~l~~~~~~l~ 149 (290)
..|.+++.+ ..+++.+..+|.|..+.+........ .....+.+.+ .++..++.+..|+.|+++.+.. +..
T Consensus 87 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~- 163 (368)
T 3mmy_A 87 GPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS--SNP- 163 (368)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSC--SSC-
T ss_pred CCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCC--CcE-
Confidence 345555554 55777777788888777653321111 1112232222 2344477777899999998765 221
Q ss_pred eeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCC
Q psy14552 150 ECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDE 229 (290)
Q Consensus 150 ~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~ 229 (290)
......+..+.++... ...++++..++.+.+|.++...................+.+..-.
T Consensus 164 --~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 224 (368)
T 3mmy_A 164 --MMVLQLPERCYCADVI--------YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDK--------- 224 (368)
T ss_dssp --SEEEECSSCEEEEEEE--------TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECT---------
T ss_pred --EEEEecCCCceEEEec--------CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccC---------
Confidence 2344556667666653 457889999999999998643211111111111222333333211
Q ss_pred CCCCccCCceEEEEEecCceEEEEEEeCC
Q psy14552 230 PAGPVTLGNLYLYVGLQNGALLRMVVDQT 258 (290)
Q Consensus 230 ~~~~~~~~~~~L~iGl~dG~l~~~~~d~~ 258 (290)
......+.+|-.||.+.-|.++..
T Consensus 225 -----~~~~~~~~~~~~dg~i~i~~~~~~ 248 (368)
T 3mmy_A 225 -----QNKPTGFALGSIEGRVAIHYINPP 248 (368)
T ss_dssp -----TSCEEEEEEEETTSEEEEEESSCS
T ss_pred -----CCCCCeEEEecCCCcEEEEecCCC
Confidence 112334999999999988877543
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.64 Score=41.19 Aligned_cols=117 Identities=21% Similarity=0.274 Sum_probs=74.9
Q ss_pred EeCCCEEEEEE-eCCeEEEEEEcCCCCCceeeeeeee-cC---cceeEEEeeeCCCCCccccEEEEEeC--CCeEEEEEe
Q psy14552 121 AVNQRQIVIAL-QGGRLIYFEMHPETGILDECSETIQ-ME---SEVLCMALSNAPSGEQMSRFLAVGLA--DNTVRLISL 193 (290)
Q Consensus 121 s~~~~~l~Val-~~~~i~~l~l~~~~~~l~~~~~~~~-l~---~ei~~l~i~~~~~~~~~~~~l~VGl~--dg~v~i~~l 193 (290)
+.++..++++. .++.|.++.++. +.+... .... .+ ..+..+.+.+. ..+|+++.. ++.+.+|.+
T Consensus 219 spdg~~l~v~~~~~~~v~v~~~~~--g~~~~~-~~~~~~~~~~~~~~~i~~spd------g~~l~v~~~~~~~~i~v~~~ 289 (361)
T 3scy_A 219 NSDGKFAYLINEIGGTVIAFRYAD--GMLDEI-QTVAADTVNAQGSGDIHLSPD------GKYLYASNRLKADGVAIFKV 289 (361)
T ss_dssp CTTSSEEEEEETTTCEEEEEEEET--TEEEEE-EEEESCSSCCCCEEEEEECTT------SSEEEEEECSSSCEEEEEEE
T ss_pred cCCCCEEEEEcCCCCeEEEEEecC--CceEEe-EEEecCCCCCCCcccEEECCC------CCEEEEECCCCCCEEEEEEE
Confidence 55666777776 478899998874 444332 2222 22 23556666542 357777765 589999999
Q ss_pred CCC-CceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEe-cCceEEEEEEeCCCCcccc
Q psy14552 194 APQ-DCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGL-QNGALLRMVVDQTSGDLSD 264 (290)
Q Consensus 194 ~~~-~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl-~dG~l~~~~~d~~~~~l~~ 264 (290)
++. ..++.+.....+..|+.+.+.. +++ +|+++- .+|.+.-|.+|..+|.+..
T Consensus 290 ~~~~g~~~~~~~~~~g~~~~~~~~sp-----------------dg~-~l~~~~~~~~~v~v~~~d~~~g~~~~ 344 (361)
T 3scy_A 290 DETNGTLTKVGYQLTGIHPRNFIITP-----------------NGK-YLLVACRDTNVIQIFERDQATGLLTD 344 (361)
T ss_dssp CTTTCCEEEEEEEECSSCCCEEEECT-----------------TSC-EEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred cCCCCcEEEeeEecCCCCCceEEECC-----------------CCC-EEEEEECCCCCEEEEEEECCCCcEee
Confidence 743 3455554444456788776542 233 577776 6788888999998887754
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.67 Score=41.30 Aligned_cols=153 Identities=10% Similarity=0.131 Sum_probs=89.1
Q ss_pred ceEEEEeecC---ceEEEEeeCCeEEEEEecCCCceec----CCCceEEEEE--e-CCCEEEEEEeCCeEEEEEEcCCCC
Q psy14552 77 KKIVRCAVNQ---RQIVIALQGGRLIYFEMHPVSDKKE----SDKKKIVRCA--V-NQRQIVIALQGGRLIYFEMHPETG 146 (290)
Q Consensus 77 ~~Iv~as~n~---~qv~ial~~g~i~~~~~~~~~~~~~----~~~~~Ii~as--~-~~~~l~Val~~~~i~~l~l~~~~~ 146 (290)
..|.+++.+. .+++.+..+|.|..+.+........ .....|.+.+ . ++..++.+..|+.|+++.+.. .
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~ 151 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG--S 151 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS--C
T ss_pred CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC--C
Confidence 3455555552 5677777788888887753321111 1222343333 3 334577777899999998764 2
Q ss_pred CceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCC
Q psy14552 147 ILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTS 226 (290)
Q Consensus 147 ~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~ 226 (290)
.+.........+..+.++++.+. ..++++|..||.+.+|.+.. ..+.... .-.....++....
T Consensus 152 ~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~d~~i~i~d~~~-~~~~~~~--~h~~~v~~~~~~~-------- 214 (383)
T 3ei3_B 152 VIQVFAKTDSWDYWYCCVDVSVS------RQMLATGDSTGRLLLLGLDG-HEIFKEK--LHKAKVTHAEFNP-------- 214 (383)
T ss_dssp EEEEEECCCCSSCCEEEEEEETT------TTEEEEEETTSEEEEEETTS-CEEEEEE--CSSSCEEEEEECS--------
T ss_pred ceEEEeccCCCCCCeEEEEECCC------CCEEEEECCCCCEEEEECCC-CEEEEec--cCCCcEEEEEECC--------
Confidence 22221111123466889988753 46899999999999999842 2222221 1112223333321
Q ss_pred CCCCCCCccCCceEEEEEecCceEEEEEEeC
Q psy14552 227 SDEPAGPVTLGNLYLYVGLQNGALLRMVVDQ 257 (290)
Q Consensus 227 ~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~ 257 (290)
.+..+|+.|-.||.+.-|.+..
T Consensus 215 ---------~~~~~l~s~~~d~~i~iwd~~~ 236 (383)
T 3ei3_B 215 ---------RCDWLMATSSVDATVKLWDLRN 236 (383)
T ss_dssp ---------SCTTEEEEEETTSEEEEEEGGG
T ss_pred ---------CCCCEEEEEeCCCEEEEEeCCC
Confidence 2333689999999998887643
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.78 Score=42.01 Aligned_cols=155 Identities=14% Similarity=0.180 Sum_probs=88.6
Q ss_pred ceEEEEeec--CceEEEEeeCCeEEEEEecCCCceec-CCCc-eE--EEEEeCCCEEEEEEeCCeEEEEEEcCCCCCcee
Q psy14552 77 KKIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKE-SDKK-KI--VRCAVNQRQIVIALQGGRLIYFEMHPETGILDE 150 (290)
Q Consensus 77 ~~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~-~~~~-~I--i~as~~~~~l~Val~~~~i~~l~l~~~~~~l~~ 150 (290)
..|.+++.. ..+++.+-.+|.|....+........ ..+. .+ ++.+.++..++.|..|++|+++.+.. +....
T Consensus 193 ~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~--~~~~~ 270 (410)
T 1vyh_C 193 HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT--KECKA 270 (410)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--CCEEE
T ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCC--Cceee
Confidence 346665554 56777777888888877653321111 1111 12 22234556688887899999998765 22111
Q ss_pred eeeeeecCcceeEEEeeeCCC--------C------CccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEE
Q psy14552 151 CSETIQMESEVLCMALSNAPS--------G------EQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVM 216 (290)
Q Consensus 151 ~~~~~~l~~ei~~l~i~~~~~--------~------~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~ 216 (290)
. -..-+..|.|+++.+... + .....+++.|..||.|.+|.+.....+.... .-.....++.+
T Consensus 271 ~--~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~--~h~~~v~~v~~ 346 (410)
T 1vyh_C 271 E--LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV--GHDNWVRGVLF 346 (410)
T ss_dssp E--ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCEEEEEE
T ss_pred E--ecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEE--CCCCcEEEEEE
Confidence 1 112356788888865320 0 0014689999999999999986432222221 11122233332
Q ss_pred EEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEE
Q psy14552 217 IEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
. ....+|+.|-.||.+.-+.+
T Consensus 347 ~------------------~~g~~l~s~s~D~~i~vwd~ 367 (410)
T 1vyh_C 347 H------------------SGGKFILSCADDKTLRVWDY 367 (410)
T ss_dssp C------------------SSSSCEEEEETTTEEEEECC
T ss_pred c------------------CCCCEEEEEeCCCeEEEEEC
Confidence 2 12345889999999887754
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.39 Score=41.05 Aligned_cols=116 Identities=18% Similarity=0.188 Sum_probs=70.4
Q ss_pred EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeee-ecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCc-
Q psy14552 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETI-QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDC- 198 (290)
Q Consensus 121 s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~-~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~- 198 (290)
+.++..++.|..|+.|+++.+....... ...... .-...|.++++.+.. ...+|++|..||.|.+|.++....
T Consensus 20 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~----d~~~l~s~~~dg~v~vwd~~~~~~~ 94 (351)
T 3f3f_A 20 DFYGRHVATCSSDQHIKVFKLDKDTSNW-ELSDSWRAHDSSIVAIDWASPE----YGRIIASASYDKTVKLWEEDPDQEE 94 (351)
T ss_dssp CSSSSEEEEEETTSEEEEEEECSSSCCE-EEEEEEECCSSCEEEEEECCGG----GCSEEEEEETTSCEEEEEECTTSCT
T ss_pred cCCCCEEEEeeCCCeEEEEECCCCCCcc-eecceeccCCCcEEEEEEcCCC----CCCEEEEEcCCCeEEEEecCCCccc
Confidence 4556678888889999999988521111 222222 246779999986431 147899999999999999975321
Q ss_pred -----eeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEe
Q psy14552 199 -----LKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 199 -----l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d 256 (290)
..... .+..-...+.-+.+... ....+|+.|-.||.+.-|.+.
T Consensus 95 ~~~~~~~~~~--~~~~~~~~v~~~~~~~~-------------~~~~~l~~~~~dg~v~iwd~~ 142 (351)
T 3f3f_A 95 CSGRRWNKLC--TLNDSKGSLYSVKFAPA-------------HLGLKLACLGNDGILRLYDAL 142 (351)
T ss_dssp TSSCSEEEEE--EECCCSSCEEEEEECCG-------------GGCSEEEEEETTCEEEEEECS
T ss_pred ccccCcceee--eecccCCceeEEEEcCC-------------CCCcEEEEecCCCcEEEecCC
Confidence 12221 12211222222333111 114569999999999988764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.09 E-value=1.2 Score=43.82 Aligned_cols=151 Identities=10% Similarity=0.067 Sum_probs=87.7
Q ss_pred eEEEEeec--CceEEEEeeCCeEEEEEecCCCceec---CCCceEEEE--Ee-CCCEEEEEEeCCeEEEEEEcCCCCCce
Q psy14552 78 KIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKE---SDKKKIVRC--AV-NQRQIVIALQGGRLIYFEMHPETGILD 149 (290)
Q Consensus 78 ~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~---~~~~~Ii~a--s~-~~~~l~Val~~~~i~~l~l~~~~~~l~ 149 (290)
.|.+.+.+ .++++.+..+|.|..+.+.....+.. .....+.++ +. ++..++.+..|+.|+++.+.. +...
T Consensus 99 ~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~--~~~~ 176 (814)
T 3mkq_A 99 YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ--STPN 176 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTC--SSCS
T ss_pred CEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCC--Ccce
Confidence 35555544 56788888888888877654322211 112223333 33 344588888899999998764 2211
Q ss_pred eeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCC
Q psy14552 150 ECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDE 229 (290)
Q Consensus 150 ~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~ 229 (290)
... ....+..+.++++.+.+ ...++++|..||.+.+|.+.....+.... .-.....++...
T Consensus 177 ~~~-~~~~~~~v~~~~~~~~~----~~~~l~~~~~dg~i~~~d~~~~~~~~~~~--~~~~~v~~~~~~------------ 237 (814)
T 3mkq_A 177 FTL-TTGQERGVNYVDYYPLP----DKPYMITASDDLTIKIWDYQTKSCVATLE--GHMSNVSFAVFH------------ 237 (814)
T ss_dssp EEE-ECCCTTCCCEEEECCST----TCCEEEEECTTSEEEEEETTTTEEEEEEE--CCSSCEEEEEEC------------
T ss_pred eEE-ecCCCCCEEEEEEEECC----CCCEEEEEeCCCEEEEEECCCCcEEEEEc--CCCCCEEEEEEc------------
Confidence 111 11234678888887642 24689999999999999986432222221 111122232222
Q ss_pred CCCCccCCceEEEEEecCceEEEEEE
Q psy14552 230 PAGPVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 230 ~~~~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
....+|++|-.||.+.-|.+
T Consensus 238 ------~~~~~l~~~~~dg~v~vwd~ 257 (814)
T 3mkq_A 238 ------PTLPIIISGSEDGTLKIWNS 257 (814)
T ss_dssp ------SSSSEEEEEETTSCEEEEET
T ss_pred ------CCCCEEEEEeCCCeEEEEEC
Confidence 12236999999999887754
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.56 Score=39.86 Aligned_cols=139 Identities=9% Similarity=0.080 Sum_probs=81.6
Q ss_pred ecCceEEEEeeCCeEEEEEecCCCcee----cC-CCceEEEEEeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecC
Q psy14552 84 VNQRQIVIALQGGRLIYFEMHPVSDKK----ES-DKKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQME 158 (290)
Q Consensus 84 ~n~~qv~ial~~g~i~~~~~~~~~~~~----~~-~~~~Ii~as~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~ 158 (290)
-+..+++.+..+|.+..+.+....... .. ....+.+.+.++..++.+..|+.|+++. . +.... ......
T Consensus 69 ~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~--~~~~~--~~~~~~ 142 (313)
T 3odt_A 69 SEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--E--GSLVY--NLQAHN 142 (313)
T ss_dssp TTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--T--TEEEE--EEECCS
T ss_pred CCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--C--CcEEE--ecccCC
Confidence 346778888888888777664332111 11 1222333355667788888899999987 2 21111 112245
Q ss_pred cceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCc
Q psy14552 159 SEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGN 238 (290)
Q Consensus 159 ~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~ 238 (290)
..+.++.+.+.+ ..++++|..||.+.+|.... ...... ........++.... .+.
T Consensus 143 ~~v~~~~~~~~~-----~~~l~~~~~d~~i~i~d~~~--~~~~~~-~~~~~~i~~~~~~~-----------------~~~ 197 (313)
T 3odt_A 143 ASVWDAKVVSFS-----ENKFLTASADKTIKLWQNDK--VIKTFS-GIHNDVVRHLAVVD-----------------DGH 197 (313)
T ss_dssp SCEEEEEEEETT-----TTEEEEEETTSCEEEEETTE--EEEEEC-SSCSSCEEEEEEEE-----------------TTE
T ss_pred CceeEEEEccCC-----CCEEEEEECCCCEEEEecCc--eEEEEe-ccCcccEEEEEEcC-----------------CCe
Confidence 677788776542 56899999999999998331 111110 01122334444432 223
Q ss_pred eEEEEEecCceEEEEEE
Q psy14552 239 LYLYVGLQNGALLRMVV 255 (290)
Q Consensus 239 ~~L~iGl~dG~l~~~~~ 255 (290)
++.|-.||.+.-|.+
T Consensus 198 --~~~~~~dg~i~i~d~ 212 (313)
T 3odt_A 198 --FISCSNDGLIKLVDM 212 (313)
T ss_dssp --EEEEETTSEEEEEET
T ss_pred --EEEccCCCeEEEEEC
Confidence 888999998887755
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=96.06 E-value=1 Score=42.51 Aligned_cols=109 Identities=10% Similarity=0.121 Sum_probs=72.4
Q ss_pred CCceEEEEee--cCceEEEEeeCCeEEEEEecCCCceec-C--CCceEEEE--Ee----------CCCEEEEEEeCCeEE
Q psy14552 75 DKKKIVRCAV--NQRQIVIALQGGRLIYFEMHPVSDKKE-S--DKKKIVRC--AV----------NQRQIVIALQGGRLI 137 (290)
Q Consensus 75 ~~~~Iv~as~--n~~qv~ial~~g~i~~~~~~~~~~~~~-~--~~~~Ii~a--s~----------~~~~l~Val~~~~i~ 137 (290)
....|.+++. ++.+++.+..+|.|..+.+........ . ....+.++ +. ++..++.+..|+.|+
T Consensus 487 ~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~ 566 (615)
T 1pgu_A 487 LRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIF 566 (615)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEE
T ss_pred ccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEE
Confidence 3445666665 577888888889998887754322222 1 22334333 44 666788888899999
Q ss_pred EEEEcCCCCCceeeeeee-ecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeC
Q psy14552 138 YFEMHPETGILDECSETI-QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLA 194 (290)
Q Consensus 138 ~l~l~~~~~~l~~~~~~~-~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~ 194 (290)
++.++.. ... .... .-...|.++++.+. .. |+.|..||.|.+|+++
T Consensus 567 iw~~~~~-~~~---~~~~~~h~~~v~~l~~s~~------~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 567 IYSVKRP-MKI---IKALNAHKDGVNNLLWETP------ST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp EEESSCT-TCC---EEETTSSTTCEEEEEEEET------TE-EEEEETTSCEEEEEEC
T ss_pred EEECCCC-cee---chhhhcCccceEEEEEcCC------CC-eEEecCCceEEEEeee
Confidence 9998751 121 1111 23578999999864 24 8899999999999986
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.87 Score=41.19 Aligned_cols=150 Identities=13% Similarity=0.097 Sum_probs=86.3
Q ss_pred ceEEEEeec--CceEEEEeeCCeEEEEEecCCCcee-cC-CCceE--EEEEeCCCEEEEEE---eCCeEEEEEEcCCCCC
Q psy14552 77 KKIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKK-ES-DKKKI--VRCAVNQRQIVIAL---QGGRLIYFEMHPETGI 147 (290)
Q Consensus 77 ~~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~-~~-~~~~I--i~as~~~~~l~Val---~~~~i~~l~l~~~~~~ 147 (290)
..|...+.+ .++++.+..+|.|..+.+....... .. ....+ ++.+.++..+++.. .|+.|+++.+.. +.
T Consensus 218 ~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~--~~ 295 (401)
T 4aez_A 218 SEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT--GA 295 (401)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT--CC
T ss_pred CCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC--CC
Confidence 345555554 6678888888988877765322111 11 11123 22233344444433 489999998875 32
Q ss_pred ceeeeeeeecCcceeEEEeeeCCCCCccccEEEE--EeCCCeEEEEEeCCCCceeEeeE-EecCCcceEEEEEEecCCCC
Q psy14552 148 LDECSETIQMESEVLCMALSNAPSGEQMSRFLAV--GLADNTVRLISLAPQDCLKQKNL-QGLPDLAESLVMIEMGASDP 224 (290)
Q Consensus 148 l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~V--Gl~dg~v~i~~l~~~~~l~~~~~-~~L~~~p~Sl~~~~~~~~~~ 224 (290)
. ......+..+.++.+.+. ..++++ |..||.+.+|.+.... +..... ..-.....++...
T Consensus 296 ~---~~~~~~~~~v~~~~~s~~------~~~l~~~~g~~dg~i~v~~~~~~~-~~~~~~~~~h~~~v~~~~~s------- 358 (401)
T 4aez_A 296 R---VNTVDAGSQVTSLIWSPH------SKEIMSTHGFPDNNLSIWSYSSSG-LTKQVDIPAHDTRVLYSALS------- 358 (401)
T ss_dssp E---EEEEECSSCEEEEEECSS------SSEEEEEECTTTCEEEEEEEETTE-EEEEEEEECCSSCCCEEEEC-------
T ss_pred E---EEEEeCCCcEEEEEECCC------CCeEEEEeecCCCcEEEEecCCcc-ceeEEEecCCCCCEEEEEEC-------
Confidence 2 234456778999988653 456767 5579999999986422 222211 1111222333222
Q ss_pred CCCCCCCCCccCCceEEEEEecCceEEEEEEe
Q psy14552 225 TSSDEPAGPVTLGNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 225 ~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d 256 (290)
....+|+.|-.||.+.-|.+.
T Consensus 359 -----------~dg~~l~s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 359 -----------PDGRILSTAASDENLKFWRVY 379 (401)
T ss_dssp -----------TTSSEEEEECTTSEEEEEECC
T ss_pred -----------CCCCEEEEEeCCCcEEEEECC
Confidence 123469999999999888764
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.049 Score=48.62 Aligned_cols=146 Identities=14% Similarity=0.161 Sum_probs=76.3
Q ss_pred ceEEEEeeCCeEEEEEecCCCceec----C-CCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCc
Q psy14552 87 RQIVIALQGGRLIYFEMHPVSDKKE----S-DKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMES 159 (290)
Q Consensus 87 ~qv~ial~~g~i~~~~~~~~~~~~~----~-~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ 159 (290)
.+++.+..+|.|..+.+... .|.. . ....+.+. +.++..++.+..|+.|+++.+... ..+...........
T Consensus 24 ~~l~~~~~d~~i~iw~~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~-~~~~~~~~~~~~~~ 101 (377)
T 3dwl_C 24 TEFVTTTATNQVELYEQDGN-GWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPD-GTWKQTLVLLRLNR 101 (377)
T ss_dssp SEEECCCSSSCBCEEEEETT-EEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-------CCCCEEECCCCSS
T ss_pred CEEEEecCCCEEEEEEccCC-ceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC-CceeeeeEecccCC
Confidence 44444445666666665422 1111 1 11224333 345566888888999999988752 11112111123567
Q ss_pred ceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCce
Q psy14552 160 EVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNL 239 (290)
Q Consensus 160 ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (290)
.|.++++.+. ..++++|..||.+.+|.++............ +.-...+.-+.+. ....
T Consensus 102 ~v~~~~~~~~------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~h~~~v~~~~~~---------------~~~~ 159 (377)
T 3dwl_C 102 AATFVRWSPN------EDKFAVGSGARVISVCYFEQENDWWVSKHLK-RPLRSTILSLDWH---------------PNNV 159 (377)
T ss_dssp CEEEEECCTT------SSCCEEEESSSCEEECCC-----CCCCEEEC-SSCCSCEEEEEEC---------------TTSS
T ss_pred ceEEEEECCC------CCEEEEEecCCeEEEEEECCcccceeeeEee-cccCCCeEEEEEc---------------CCCC
Confidence 8889988642 4688999999999999986433211111111 1012222223331 1234
Q ss_pred EEEEEecCceEEEEEEe
Q psy14552 240 YLYVGLQNGALLRMVVD 256 (290)
Q Consensus 240 ~L~iGl~dG~l~~~~~d 256 (290)
+|..|-.||.+.-|.+.
T Consensus 160 ~l~~~~~d~~i~iwd~~ 176 (377)
T 3dwl_C 160 LLAAGCADRKAYVLSAY 176 (377)
T ss_dssp EEEEEESSSCEEEEEEC
T ss_pred EEEEEeCCCEEEEEEEE
Confidence 68999999999888874
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=95.93 E-value=1.1 Score=42.07 Aligned_cols=104 Identities=16% Similarity=0.168 Sum_probs=65.2
Q ss_pred eEEEEee--cCceEEEEeeCCeEEEEEecCCCceec--CCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceee
Q psy14552 78 KIVRCAV--NQRQIVIALQGGRLIYFEMHPVSDKKE--SDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDEC 151 (290)
Q Consensus 78 ~Iv~as~--n~~qv~ial~~g~i~~~~~~~~~~~~~--~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~ 151 (290)
.|...+. ++.+++.+..+|.|..+..+. ..... .....+.+. +.++..++.+..|+.|++...+ +.+.
T Consensus 428 ~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~---~~~~-- 501 (577)
T 2ymu_A 428 SVWGVAFSPDDQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN---GQLL-- 501 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTS-CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT---SCEE--
T ss_pred CeEEEEECCCCCEEEEEcCCCEEEEEECCC-CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC---CCEE--
Confidence 3444443 466777777888887765432 11111 122234222 4567778888889999998743 3221
Q ss_pred eeeee-cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeC
Q psy14552 152 SETIQ-MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLA 194 (290)
Q Consensus 152 ~~~~~-l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~ 194 (290)
+... -...|.++++.+. ..+|+.|..||.|.+|..+
T Consensus 502 -~~~~~h~~~v~~l~~s~d------g~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 502 -QTLTGHSSSVRGVAFSPD------GQTIASASDDKTVKLWNRN 538 (577)
T ss_dssp -EEEECCSSCEEEEEECTT------SSCEEEEETTSEEEEECTT
T ss_pred -EEEeCCCCCEEEEEEcCC------CCEEEEEECcCEEEEEeCC
Confidence 2222 3567889988643 4689999999999999864
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.86 Score=40.42 Aligned_cols=140 Identities=13% Similarity=0.103 Sum_probs=85.6
Q ss_pred cCceEEEEeeCCeEEEEEecCCCcee-c-CCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcc
Q psy14552 85 NQRQIVIALQGGRLIYFEMHPVSDKK-E-SDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESE 160 (290)
Q Consensus 85 n~~qv~ial~~g~i~~~~~~~~~~~~-~-~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~e 160 (290)
.+.+++.+..+|.|..+.+....... . .....+.+. +.++..++.+..++.|+++.+.. +...... ......
T Consensus 216 ~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~~~~~--~~~~~~ 291 (425)
T 1r5m_A 216 DDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN--GNSQNCF--YGHSQS 291 (425)
T ss_dssp ETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSS--BSCSEEE--CCCSSC
T ss_pred CCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC--CccceEe--cCCCcc
Confidence 36778888888998888765432111 1 112223222 45666788888899999988765 2221111 124567
Q ss_pred eeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecC-CcceEEEEEEecCCCCCCCCCCCCCccCCce
Q psy14552 161 VLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLP-DLAESLVMIEMGASDPTSSDEPAGPVTLGNL 239 (290)
Q Consensus 161 i~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~-~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (290)
+.++.+.+. . ++++|..||.+.+|.+.....+.. .... ..+.++... ....
T Consensus 292 i~~~~~~~~------~-~l~~~~~d~~i~i~d~~~~~~~~~---~~~~~~~i~~~~~s------------------~~~~ 343 (425)
T 1r5m_A 292 IVSASWVGD------D-KVISCSMDGSVRLWSLKQNTLLAL---SIVDGVPIFAGRIS------------------QDGQ 343 (425)
T ss_dssp EEEEEEETT------T-EEEEEETTSEEEEEETTTTEEEEE---EECTTCCEEEEEEC------------------TTSS
T ss_pred EEEEEECCC------C-EEEEEeCCCcEEEEECCCCcEeEe---cccCCccEEEEEEc------------------CCCC
Confidence 888888642 2 899999999999999864322222 2221 222333222 1234
Q ss_pred EEEEEecCceEEEEEEe
Q psy14552 240 YLYVGLQNGALLRMVVD 256 (290)
Q Consensus 240 ~L~iGl~dG~l~~~~~d 256 (290)
+|++|..||.+.-|.+.
T Consensus 344 ~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 344 KYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp EEEEEETTSCEEEEECH
T ss_pred EEEEEECCCeEEEEECC
Confidence 68999999999988774
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=95.89 E-value=0.57 Score=42.94 Aligned_cols=148 Identities=9% Similarity=0.088 Sum_probs=88.6
Q ss_pred ceEEEEeec--CceEEEEeeCCeEEEEEecCCCce-ecCCC-ceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCcee
Q psy14552 77 KKIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDK-KESDK-KKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDE 150 (290)
Q Consensus 77 ~~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~-~~~~~-~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~ 150 (290)
..|.++..+ .++++.+-.+|.|....+...... ....+ ..+.+. +.++..++.|..|++|+++.+.. +..
T Consensus 109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~--~~~-- 184 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG--FEC-- 184 (410)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS--SCE--
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--Cce--
Confidence 356666665 467777777888888776532211 11111 223333 44566788888899999998764 221
Q ss_pred eeeee-ecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCC
Q psy14552 151 CSETI-QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDE 229 (290)
Q Consensus 151 ~~~~~-~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~ 229 (290)
.... .-...|.++++.+. ..+++.|..||++.+|.+.....+.... + -...+..+.+.
T Consensus 185 -~~~~~~h~~~V~~v~~~p~------~~~l~s~s~D~~i~~wd~~~~~~~~~~~----~-h~~~v~~~~~~--------- 243 (410)
T 1vyh_C 185 -IRTMHGHDHNVSSVSIMPN------GDHIVSASRDKTIKMWEVQTGYCVKTFT----G-HREWVRMVRPN--------- 243 (410)
T ss_dssp -EECCCCCSSCEEEEEECSS------SSEEEEEETTSEEEEEETTTCCEEEEEE----C-CSSCEEEEEEC---------
T ss_pred -eEEEcCCCCCEEEEEEeCC------CCEEEEEeCCCeEEEEECCCCcEEEEEe----C-CCccEEEEEEC---------
Confidence 1112 23567899988753 4689999999999999986443332221 1 11122223331
Q ss_pred CCCCccCCceEEEEEecCceEEEEEE
Q psy14552 230 PAGPVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 230 ~~~~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
....+|..|-.||.+.-+.+
T Consensus 244 ------~~g~~l~s~s~D~~v~vwd~ 263 (410)
T 1vyh_C 244 ------QDGTLIASCSNDQTVRVWVV 263 (410)
T ss_dssp ------TTSSEEEEEETTSCEEEEET
T ss_pred ------CCCCEEEEEcCCCeEEEEEC
Confidence 12345888999998877754
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=95.86 E-value=1 Score=41.13 Aligned_cols=149 Identities=7% Similarity=0.159 Sum_probs=92.7
Q ss_pred CCceEEEEeecCceEEEEeeCCeEEEEEecCCCceec-CCC-ceEEEEEeCCCEEEEEEeCCeEEEEEEcCCCCCceeee
Q psy14552 75 DKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKE-SDK-KKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECS 152 (290)
Q Consensus 75 ~~~~Iv~as~n~~qv~ial~~g~i~~~~~~~~~~~~~-~~~-~~Ii~as~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~ 152 (290)
....|.+.+.++.+++.+..+|.|..+.+........ ..+ ..+.+.+.++..++.|..|+.|+++.+... ..+ ...
T Consensus 172 h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~-~~~-~~~ 249 (435)
T 1p22_A 172 HTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP-TDI-TLR 249 (435)
T ss_dssp CSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSS-SCC-EEE
T ss_pred CCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCC-CCc-eee
Confidence 3456788888888899999999998887754322111 112 223333666678888888999999988752 111 111
Q ss_pred ee-eecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCC
Q psy14552 153 ET-IQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPA 231 (290)
Q Consensus 153 ~~-~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~ 231 (290)
.. ..-...+.++++. ..++++|..||.+.+|.+.....+.... .-...+..+.+
T Consensus 250 ~~~~~~~~~v~~~~~~--------~~~l~s~~~dg~i~vwd~~~~~~~~~~~-----~~~~~v~~~~~------------ 304 (435)
T 1p22_A 250 RVLVGHRAAVNVVDFD--------DKYIVSASGDRTIKVWNTSTCEFVRTLN-----GHKRGIACLQY------------ 304 (435)
T ss_dssp EEECCCSSCEEEEEEE--------TTEEEEEETTSEEEEEETTTCCEEEEEE-----CCSSCEEEEEE------------
T ss_pred eEecCCCCcEEEEEeC--------CCEEEEEeCCCeEEEEECCcCcEEEEEc-----CCCCcEEEEEe------------
Confidence 11 1234567777762 4689999999999999986433332221 11112222222
Q ss_pred CCccCCceEEEEEecCceEEEEEE
Q psy14552 232 GPVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 232 ~~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
.+ .+|+.|-.||.+.-|.+
T Consensus 305 ----~~-~~l~~g~~dg~i~iwd~ 323 (435)
T 1p22_A 305 ----RD-RLVVSGSSDNTIRLWDI 323 (435)
T ss_dssp ----ET-TEEEEEETTSCEEEEET
T ss_pred ----CC-CEEEEEeCCCeEEEEEC
Confidence 12 35999999999887755
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=95.82 E-value=1 Score=40.60 Aligned_cols=152 Identities=11% Similarity=0.101 Sum_probs=85.6
Q ss_pred CceEEEEeecC---ceEEEEeeCCeEEEEEecCCCc---ee-cCCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCC
Q psy14552 76 KKKIVRCAVNQ---RQIVIALQGGRLIYFEMHPVSD---KK-ESDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETG 146 (290)
Q Consensus 76 ~~~Iv~as~n~---~qv~ial~~g~i~~~~~~~~~~---~~-~~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~ 146 (290)
...|.+++.+. ..++.+-.+|.|....+..... +. ......+.+. +.++..++.+..|+.|+++.+.. +
T Consensus 131 ~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~ 208 (402)
T 2aq5_A 131 TKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRK--G 208 (402)
T ss_dssp SSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTT--T
T ss_pred CCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCC--C
Confidence 34566666652 4566677788888777653221 11 1112224333 34566788888899999998765 2
Q ss_pred CceeeeeeeecC---cceeEEEeeeCCCCCccccEEEEE---eCCCeEEEEEeCCCCceeEeeEEecC--CcceEEEEEE
Q psy14552 147 ILDECSETIQME---SEVLCMALSNAPSGEQMSRFLAVG---LADNTVRLISLAPQDCLKQKNLQGLP--DLAESLVMIE 218 (290)
Q Consensus 147 ~l~~~~~~~~l~---~ei~~l~i~~~~~~~~~~~~l~VG---l~dg~v~i~~l~~~~~l~~~~~~~L~--~~p~Sl~~~~ 218 (290)
. . ....... ..+.++.+.+. ..++++| ..||.+.+|.+..... ......++ ....++....
T Consensus 209 ~--~-~~~~~~~~~~~~~~~~~~~~~------~~~l~~g~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~ 277 (402)
T 2aq5_A 209 T--V-VAEKDRPHEGTRPVHAVFVSE------GKILTTGFSRMSERQVALWDTKHLEE--PLSLQELDTSSGVLLPFFDP 277 (402)
T ss_dssp E--E-EEEEECSSCSSSCCEEEECST------TEEEEEEECTTCCEEEEEEETTBCSS--CSEEEECCCCSSCEEEEEET
T ss_pred c--e-eeeeccCCCCCcceEEEEcCC------CcEEEEeccCCCCceEEEEcCccccC--CceEEeccCCCceeEEEEcC
Confidence 2 1 1222111 22667777532 4688888 5799999999864322 11112222 2223332221
Q ss_pred ecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeC
Q psy14552 219 MGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQ 257 (290)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~ 257 (290)
.+...+.+|-.||.+.-|.++.
T Consensus 278 -----------------~~~~l~~~g~~dg~i~i~d~~~ 299 (402)
T 2aq5_A 278 -----------------DTNIVYLCGKGDSSIRYFEITS 299 (402)
T ss_dssp -----------------TTTEEEEEETTCSCEEEEEECS
T ss_pred -----------------CCCEEEEEEcCCCeEEEEEecC
Confidence 2344334677899999998854
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.80 E-value=1 Score=40.61 Aligned_cols=159 Identities=11% Similarity=0.160 Sum_probs=85.9
Q ss_pred CCceEEEEeec--CceEEEEeeCCeEEEEEecCCC--------ceec----CCC-------------ceE--EEEEeCC-
Q psy14552 75 DKKKIVRCAVN--QRQIVIALQGGRLIYFEMHPVS--------DKKE----SDK-------------KKI--VRCAVNQ- 124 (290)
Q Consensus 75 ~~~~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~--------~~~~----~~~-------------~~I--i~as~~~- 124 (290)
....|.+++.+ ..+++.+..+|.|..+.+.... ++.. ..+ ..| ++-+.++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 34556666655 5677777788888888775322 1100 111 113 2223333
Q ss_pred -CEEEEEEeCCeEEEEEEcCCCCCcee------------------------------------eeee--eecCcceeEEE
Q psy14552 125 -RQIVIALQGGRLIYFEMHPETGILDE------------------------------------CSET--IQMESEVLCMA 165 (290)
Q Consensus 125 -~~l~Val~~~~i~~l~l~~~~~~l~~------------------------------------~~~~--~~l~~ei~~l~ 165 (290)
..++.+..|+.|+++.+... .... .... ..-...|.+++
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISER--DKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEE--EEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred cceEEEeCCCCeEEEEecccc--cCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 56888888999999887641 1000 0000 11345677777
Q ss_pred eeeCCCCCccccEEEEEeCCCeEEEEEeCCC-CceeEeeEE--ecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEE
Q psy14552 166 LSNAPSGEQMSRFLAVGLADNTVRLISLAPQ-DCLKQKNLQ--GLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLY 242 (290)
Q Consensus 166 i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~-~~l~~~~~~--~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 242 (290)
+.+. ..+++.| .||.+.+|.+... ..+..+... .+..-...+..+.+.. .+..+|+
T Consensus 185 ~~~~------~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--------------~~~~~l~ 243 (447)
T 3dw8_B 185 INSD------YETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP--------------NSCNTFV 243 (447)
T ss_dssp ECTT------SSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS--------------SCTTEEE
T ss_pred EcCC------CCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC--------------CCCcEEE
Confidence 7642 4688888 8999999998621 112211000 1111122233333321 2324699
Q ss_pred EEecCceEEEEEEe
Q psy14552 243 VGLQNGALLRMVVD 256 (290)
Q Consensus 243 iGl~dG~l~~~~~d 256 (290)
.|-.||.+.-|.+.
T Consensus 244 s~~~dg~i~iwd~~ 257 (447)
T 3dw8_B 244 YSSSKGTIRLCDMR 257 (447)
T ss_dssp EEETTSCEEEEETT
T ss_pred EEeCCCeEEEEECc
Confidence 99999998877653
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=95.76 E-value=0.85 Score=39.32 Aligned_cols=110 Identities=14% Similarity=0.152 Sum_probs=66.1
Q ss_pred ceEEEEeec--CceEEEEeeCCeEEEEEecCCCceec-CCCceEEEEE-eCCCEEEEEEeCCeEEEEEEcCCCCCceeee
Q psy14552 77 KKIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKE-SDKKKIVRCA-VNQRQIVIALQGGRLIYFEMHPETGILDECS 152 (290)
Q Consensus 77 ~~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~-~~~~~Ii~as-~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~ 152 (290)
..|.+++.+ ..+++.+..+|.|..+.+........ ..+..+.++. ....+++.+..|+.|+++.++. +.+....
T Consensus 216 ~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~--~~~~~~~ 293 (340)
T 4aow_A 216 GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEG--KIIVDEL 293 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTT--TEEEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCC--CeEEEec
Confidence 346555554 56777788889988776653322211 1222233332 2234566666899999987764 2111111
Q ss_pred ee-------eecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeC
Q psy14552 153 ET-------IQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLA 194 (290)
Q Consensus 153 ~~-------~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~ 194 (290)
+. ..-+..|.++++.+. ..+|+.|..||.|++|++.
T Consensus 294 ~~~~~~~~~~~h~~~v~~l~~s~d------g~~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 294 KQEVISTSSKAEPPQCTSLAWSAD------GQTLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp CCC-------CCCCCEEEEEECTT------SSEEEEEETTSCEEEEEEE
T ss_pred cccceeeeccCCCCCEEEEEECCC------CCEEEEEeCCCEEEEEeCC
Confidence 10 113567888888642 4689999999999999985
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=95.70 E-value=1.1 Score=40.33 Aligned_cols=104 Identities=13% Similarity=0.137 Sum_probs=63.9
Q ss_pred EeCCCEEEEEE-eCCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeC---------------
Q psy14552 121 AVNQRQIVIAL-QGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLA--------------- 184 (290)
Q Consensus 121 s~~~~~l~Val-~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~--------------- 184 (290)
+.++..++++. .++.|+++.++. +.+ .........+.++++.+. ..+++++..
T Consensus 311 ~~~g~~l~~~~~~~~~v~v~d~~~--~~~---~~~~~~~~~~~~~~~s~d------g~~l~~~~~~~~~~~~~~~~~g~~ 379 (433)
T 3bws_A 311 GNTENKIYVSDMCCSKIEVYDLKE--KKV---QKSIPVFDKPNTIALSPD------GKYLYVSCRGPNHPTEGYLKKGLV 379 (433)
T ss_dssp CSSTTEEEEEETTTTEEEEEETTT--TEE---EEEEECSSSEEEEEECTT------SSEEEEEECCCCCTTTCTTSCCSS
T ss_pred CCCCCEEEEEecCCCEEEEEECCC--CcE---EEEecCCCCCCeEEEcCC------CCEEEEEecCCCcccccccccccc
Confidence 44566666654 588999988764 322 234455677888888643 357777775
Q ss_pred CCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEe-cCceEEEEEEe
Q psy14552 185 DNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGL-QNGALLRMVVD 256 (290)
Q Consensus 185 dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl-~dG~l~~~~~d 256 (290)
||.+.+|.++.. +.+.....+..|.++.... ++ .+|+++- .||.+.-|.++
T Consensus 380 dg~v~~~d~~~~---~~~~~~~~~~~~~~~~~s~-----------------dg-~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 380 LGKVYVIDTTTD---TVKEFWEAGNQPTGLDVSP-----------------DN-RYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp CCEEEEEETTTT---EEEEEEECSSSEEEEEECT-----------------TS-CEEEEEETTTTEEEEEEET
T ss_pred ceEEEEEECCCC---cEEEEecCCCCCceEEEcC-----------------CC-CEEEEEECCCCeEEEEEec
Confidence 479999987532 2232223344566655432 23 3466665 59999988875
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=95.70 E-value=0.49 Score=43.57 Aligned_cols=155 Identities=12% Similarity=0.079 Sum_probs=88.7
Q ss_pred eEEEEeec--Cc-eEEEEeeCCeEEEEEecCCCc--ee------c-CCCceEEEE--Ee-CCCEEEEEEeCCeEEEEEEc
Q psy14552 78 KIVRCAVN--QR-QIVIALQGGRLIYFEMHPVSD--KK------E-SDKKKIVRC--AV-NQRQIVIALQGGRLIYFEMH 142 (290)
Q Consensus 78 ~Iv~as~n--~~-qv~ial~~g~i~~~~~~~~~~--~~------~-~~~~~Ii~a--s~-~~~~l~Val~~~~i~~l~l~ 142 (290)
.|.+.+.+ ++ +++.+..+|.|..+.+..... +. . .....+.+. +. ++..++.+..++.|+++.+.
T Consensus 183 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~ 262 (430)
T 2xyi_A 183 EGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR 262 (430)
T ss_dssp CCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred CeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECC
Confidence 34445544 33 677777789998888764211 10 0 111123222 33 34557777789999999887
Q ss_pred CCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCC-CceeEeeEEecCCcceEEEEEEecC
Q psy14552 143 PETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQ-DCLKQKNLQGLPDLAESLVMIEMGA 221 (290)
Q Consensus 143 ~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~-~~l~~~~~~~L~~~p~Sl~~~~~~~ 221 (290)
.. ...........-...|.++++.+. +..++++|..||.|.+|.+... ..+.... .-.....++....
T Consensus 263 ~~-~~~~~~~~~~~~~~~v~~i~~~p~-----~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~--~h~~~v~~i~~sp--- 331 (430)
T 2xyi_A 263 NN-NTSKPSHTVDAHTAEVNCLSFNPY-----SEFILATGSADKTVALWDLRNLKLKLHSFE--SHKDEIFQVQWSP--- 331 (430)
T ss_dssp CS-CSSSCSEEEECCSSCEEEEEECSS-----CTTEEEEEETTSEEEEEETTCTTSCSEEEE--CCSSCEEEEEECS---
T ss_pred CC-CCCcceeEeecCCCCeEEEEeCCC-----CCCEEEEEeCCCeEEEEeCCCCCCCeEEee--cCCCCEEEEEECC---
Confidence 52 111111111134567889988753 2457889999999999998642 2222221 1112223332221
Q ss_pred CCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeC
Q psy14552 222 SDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQ 257 (290)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~ 257 (290)
.+...|..|-.||.+.-|.+..
T Consensus 332 --------------~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 332 --------------HNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp --------------SCTTEEEEEETTSCCEEEEGGG
T ss_pred --------------CCCCEEEEEeCCCcEEEEeCCC
Confidence 2344588888999999888754
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=95.66 E-value=1.1 Score=40.02 Aligned_cols=100 Identities=15% Similarity=0.181 Sum_probs=63.7
Q ss_pred cCceEEEE--eeCCeEEEEEecCCCc-----------------eecCCC-ceEEEE--EeCCCEEEEEEeCCe-EEEEEE
Q psy14552 85 NQRQIVIA--LQGGRLIYFEMHPVSD-----------------KKESDK-KKIVRC--AVNQRQIVIALQGGR-LIYFEM 141 (290)
Q Consensus 85 n~~qv~ia--l~~g~i~~~~~~~~~~-----------------~~~~~~-~~Ii~a--s~~~~~l~Val~~~~-i~~l~l 141 (290)
...+++++ ..+|.|..+.+..... .....+ ..|.+. +.++..++.|..|++ |++..+
T Consensus 146 s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~ 225 (355)
T 3vu4_A 146 SNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKT 225 (355)
T ss_dssp ETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEET
T ss_pred EccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEEC
Confidence 33666664 5678888777653221 011111 223233 455667888888998 999988
Q ss_pred cCCCCCceeeeeeee---cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCC
Q psy14552 142 HPETGILDECSETIQ---MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAP 195 (290)
Q Consensus 142 ~~~~~~l~~~~~~~~---l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~ 195 (290)
.. +.. ...+. -+..|.++++.+. ..+|+.|..||++.+|.+..
T Consensus 226 ~~--~~~---~~~~~~g~h~~~v~~~~~s~~------~~~l~s~s~d~~v~iw~~~~ 271 (355)
T 3vu4_A 226 ED--GVL---VREFRRGLDRADVVDMKWSTD------GSKLAVVSDKWTLHVFEIFN 271 (355)
T ss_dssp TT--CCE---EEEEECTTCCSCEEEEEECTT------SCEEEEEETTCEEEEEESSC
T ss_pred CC--CcE---EEEEEcCCCCCcEEEEEECCC------CCEEEEEECCCEEEEEEccC
Confidence 65 322 12333 4678999998753 47899999999999999864
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.97 Score=39.19 Aligned_cols=152 Identities=11% Similarity=0.127 Sum_probs=87.2
Q ss_pred ceEEEEeec--CceEEEEeeCCeEEEEEecCCCceec-CCCceEEEE--EeCCCEEEEEEeC-----CeEEEEEEcCCCC
Q psy14552 77 KKIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKE-SDKKKIVRC--AVNQRQIVIALQG-----GRLIYFEMHPETG 146 (290)
Q Consensus 77 ~~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~-~~~~~Ii~a--s~~~~~l~Val~~-----~~i~~l~l~~~~~ 146 (290)
..|.+++.+ ..+++.+..+|.|..+.+........ .....+.+. +.++..++++..+ +.|+++.+... .
T Consensus 75 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~-~ 153 (369)
T 3zwl_B 75 GTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERD-S 153 (369)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEEC-T
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCC-c
Confidence 345555554 56777777888888887653321111 122223222 4556678888777 89999887752 1
Q ss_pred Cceeeee-------ee-ecCc--ceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecC-CcceEEE
Q psy14552 147 ILDECSE-------TI-QMES--EVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLP-DLAESLV 215 (290)
Q Consensus 147 ~l~~~~~-------~~-~l~~--ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~-~~p~Sl~ 215 (290)
....... .. ..+. .+.++++.+. ..++++|..||.|.+|.+.... ..+...... ....++.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~ 225 (369)
T 3zwl_B 154 ATHELTKVSEEPIHKIITHEGLDAATVAGWSTK------GKYIIAGHKDGKISKYDVSNNY--EYVDSIDLHEKSISDMQ 225 (369)
T ss_dssp TTCCEEEECSSCSEEEECCTTCCCEEEEEECGG------GCEEEEEETTSEEEEEETTTTT--EEEEEEECCSSCEEEEE
T ss_pred cceeecccccceeeeccCCcCccceeEEEEcCC------CCEEEEEcCCCEEEEEECCCCc--EeEEEEecCCCceeEEE
Confidence 1111100 00 1122 7888887642 5689999999999999986421 222212211 2223332
Q ss_pred EEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEE
Q psy14552 216 MIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
.. ....+|+.|-.||.+.-|.+
T Consensus 226 ~~------------------~~~~~l~~~~~d~~i~v~d~ 247 (369)
T 3zwl_B 226 FS------------------PDLTYFITSSRDTNSFLVDV 247 (369)
T ss_dssp EC------------------TTSSEEEEEETTSEEEEEET
T ss_pred EC------------------CCCCEEEEecCCceEEEEEC
Confidence 22 12346899999999887754
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.58 E-value=1 Score=39.70 Aligned_cols=107 Identities=12% Similarity=0.138 Sum_probs=62.5
Q ss_pred EeecCceEEEEeeCCeEEEEEecCCC---ceecCCCceEEEE--Ee--CCCEEEEEEeCCeEEEEEEcCCCCCceeeeee
Q psy14552 82 CAVNQRQIVIALQGGRLIYFEMHPVS---DKKESDKKKIVRC--AV--NQRQIVIALQGGRLIYFEMHPETGILDECSET 154 (290)
Q Consensus 82 as~n~~qv~ial~~g~i~~~~~~~~~---~~~~~~~~~Ii~a--s~--~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~ 154 (290)
+...|..+.+--.++++..+...... .........+.+. +. ++..++.+..|++|+++.+.. +...... .
T Consensus 90 s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~--~~~~~~~-~ 166 (343)
T 3lrv_A 90 SRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYED--DSQYIVH-S 166 (343)
T ss_dssp EECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSS--SCEEEEE-C
T ss_pred EecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCC--CcEEEEE-e
Confidence 33446666666555555444433222 1111111224333 34 556677787899999998875 3321111 1
Q ss_pred eecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCC
Q psy14552 155 IQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQD 197 (290)
Q Consensus 155 ~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~ 197 (290)
......+.++++.+. ..++++|..||.|.+|.+....
T Consensus 167 ~~~~~~i~~~~~~pd------g~~lasg~~dg~i~iwd~~~~~ 203 (343)
T 3lrv_A 167 AKSDVEYSSGVLHKD------SLLLALYSPDGILDVYNLSSPD 203 (343)
T ss_dssp CCSSCCCCEEEECTT------SCEEEEECTTSCEEEEESSCTT
T ss_pred cCCCCceEEEEECCC------CCEEEEEcCCCEEEEEECCCCC
Confidence 223456889988653 4789999999999999986543
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=95.52 E-value=1.2 Score=39.38 Aligned_cols=107 Identities=11% Similarity=0.154 Sum_probs=67.2
Q ss_pred eEEEEeec--CceEEEEeeCCeEEEEEecCCCceec-C-CCceEEE--EEeCCCEEEEEEeCCeEEEEEEcCCCCCceee
Q psy14552 78 KIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKE-S-DKKKIVR--CAVNQRQIVIALQGGRLIYFEMHPETGILDEC 151 (290)
Q Consensus 78 ~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~-~-~~~~Ii~--as~~~~~l~Val~~~~i~~l~l~~~~~~l~~~ 151 (290)
.|.+++.+ .++++.+-.+|.|....+........ . ....+.+ .+.++..++.|..|++|+++.+.. +. ..
T Consensus 186 ~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~--~~--~~ 261 (340)
T 1got_B 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA--DQ--EL 261 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--TE--EE
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCC--Cc--EE
Confidence 45555554 45666677788888776643221111 1 1122322 245677788888899999998865 21 11
Q ss_pred eeeee---cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCC
Q psy14552 152 SETIQ---MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAP 195 (290)
Q Consensus 152 ~~~~~---l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~ 195 (290)
.... ....|.++++.+. ..++++|..||.+.+|.+..
T Consensus 262 -~~~~~~~~~~~v~~~~~s~~------g~~l~~g~~d~~i~vwd~~~ 301 (340)
T 1got_B 262 -MTYSHDNIICGITSVSFSKS------GRLLLAGYDDFNCNVWDALK 301 (340)
T ss_dssp -EEECCTTCCSCEEEEEECTT------SSEEEEEETTSEEEEEETTT
T ss_pred -EEEccCCcccceEEEEECCC------CCEEEEECCCCeEEEEEccc
Confidence 1222 2346888888643 57999999999999999764
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=95.49 E-value=1.4 Score=39.85 Aligned_cols=153 Identities=10% Similarity=0.085 Sum_probs=94.1
Q ss_pred CCceEEEEeecCceEEEEeeCCeEEEEEecCCCc-eec--CCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCce
Q psy14552 75 DKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSD-KKE--SDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILD 149 (290)
Q Consensus 75 ~~~~Iv~as~n~~qv~ial~~g~i~~~~~~~~~~-~~~--~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~ 149 (290)
....|.+.+.++.+++.+..+|.|..+.+..... ... .....+.+. +.++..++.|..|+.|+++.+.. +..
T Consensus 175 ~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~--~~~- 251 (401)
T 4aez_A 175 HQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS--SIP- 251 (401)
T ss_dssp CSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC--SSE-
T ss_pred CCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCC--CCc-
Confidence 4556888888899999999999998887753221 111 112223222 34566788888899999998765 221
Q ss_pred eeeeeeecCcceeEEEeeeCCCCCccccEEEEEe--CCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCC
Q psy14552 150 ECSETIQMESEVLCMALSNAPSGEQMSRFLAVGL--ADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSS 227 (290)
Q Consensus 150 ~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl--~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~ 227 (290)
..........|.++++.+. +..++++|. .||.+.+|.+.....+... ..+....++....
T Consensus 252 -~~~~~~~~~~v~~~~~~p~-----~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~---~~~~~v~~~~~s~--------- 313 (401)
T 4aez_A 252 -KFTKTNHNAAVKAVAWCPW-----QSNLLATGGGTMDKQIHFWNAATGARVNTV---DAGSQVTSLIWSP--------- 313 (401)
T ss_dssp -EEEECCCSSCCCEEEECTT-----STTEEEEECCTTTCEEEEEETTTCCEEEEE---ECSSCEEEEEECS---------
T ss_pred -cEEecCCcceEEEEEECCC-----CCCEEEEecCCCCCEEEEEECCCCCEEEEE---eCCCcEEEEEECC---------
Confidence 1111134567888888753 245677765 6999999998743333322 2233333333321
Q ss_pred CCCCCCccCCceEEEE--EecCceEEEEEEeC
Q psy14552 228 DEPAGPVTLGNLYLYV--GLQNGALLRMVVDQ 257 (290)
Q Consensus 228 ~~~~~~~~~~~~~L~i--Gl~dG~l~~~~~d~ 257 (290)
...+|++ |..||.+.-|.+..
T Consensus 314 ---------~~~~l~~~~g~~dg~i~v~~~~~ 336 (401)
T 4aez_A 314 ---------HSKEIMSTHGFPDNNLSIWSYSS 336 (401)
T ss_dssp ---------SSSEEEEEECTTTCEEEEEEEET
T ss_pred ---------CCCeEEEEeecCCCcEEEEecCC
Confidence 2234666 66899998887754
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.081 Score=47.56 Aligned_cols=141 Identities=11% Similarity=0.025 Sum_probs=78.1
Q ss_pred eeCCeEEEEEecCCCc---ee-cCCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeee-ecCcceeEEE
Q psy14552 93 LQGGRLIYFEMHPVSD---KK-ESDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECSETI-QMESEVLCMA 165 (290)
Q Consensus 93 l~~g~i~~~~~~~~~~---~~-~~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~-~l~~ei~~l~ 165 (290)
-.+|.|..+.+..... .. ......+.+. +.++..++.|..|+.|+++.+......... .... .-...|.+++
T Consensus 42 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~-~~~~~~h~~~v~~~~ 120 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINS-MARFSNHSSSVKTVK 120 (416)
T ss_dssp CCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCE-EEECCCSSSCCCEEE
T ss_pred CCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccc-hhhccCCccceEEEE
Confidence 3456676666643211 11 1122234333 455667888888999999987651000111 1112 2456788999
Q ss_pred eeeCCCCCccccEEEEEeCCCeEEEEEeCCCCc-e---eEeeEEecC---CcceEEEEEEecCCCCCCCCCCCCCccCCc
Q psy14552 166 LSNAPSGEQMSRFLAVGLADNTVRLISLAPQDC-L---KQKNLQGLP---DLAESLVMIEMGASDPTSSDEPAGPVTLGN 238 (290)
Q Consensus 166 i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~-l---~~~~~~~L~---~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~ 238 (290)
+.+. ...+++.|..||.|.+|.+..... . .......+. ....++.... .+.
T Consensus 121 ~~~~-----~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----------------~~~ 178 (416)
T 2pm9_A 121 FNAK-----QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQ-----------------SLA 178 (416)
T ss_dssp ECSS-----STTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECS-----------------SCT
T ss_pred EcCC-----CCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCC-----------------CCC
Confidence 8653 246899999999999999864320 0 111100111 1223333321 224
Q ss_pred eEEEEEecCceEEEEEEe
Q psy14552 239 LYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 239 ~~L~iGl~dG~l~~~~~d 256 (290)
.+|+.|-.||.+.-+.+.
T Consensus 179 ~~l~~~~~dg~v~iwd~~ 196 (416)
T 2pm9_A 179 HVFASAGSSNFASIWDLK 196 (416)
T ss_dssp TEEEEESSSSCEEEEETT
T ss_pred cEEEEEcCCCCEEEEECC
Confidence 568899999998877653
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.81 Score=47.83 Aligned_cols=142 Identities=16% Similarity=0.208 Sum_probs=85.2
Q ss_pred CceEEEEeeCCeEEEEEecCCCceec-C-CCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeee-ecCcc
Q psy14552 86 QRQIVIALQGGRLIYFEMHPVSDKKE-S-DKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECSETI-QMESE 160 (290)
Q Consensus 86 ~~qv~ial~~g~i~~~~~~~~~~~~~-~-~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~-~l~~e 160 (290)
..+++.+..+|.|..+.......... . ....+.++ +.++..++.+..|+.|+++.+.. +... ... .-...
T Consensus 627 ~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~--~~~~---~~~~~~~~~ 701 (1249)
T 3sfz_A 627 GQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT--GKLV---HTYDEHSEQ 701 (1249)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--CCEE---EEEECCSSC
T ss_pred CCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC--CceE---EEEcCCCCc
Confidence 55666666777777666543221111 1 12224333 45566788888899999998865 3321 122 24668
Q ss_pred eeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceE
Q psy14552 161 VLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLY 240 (290)
Q Consensus 161 i~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (290)
+.++.+.+.. ...+++.|..||.+.+|.++....+... ..-...+..+.+. ....+
T Consensus 702 v~~~~~~~~~----~~~~l~sg~~d~~v~vwd~~~~~~~~~~-----~~h~~~v~~~~~s---------------p~~~~ 757 (1249)
T 3sfz_A 702 VNCCHFTNKS----NHLLLATGSNDFFLKLWDLNQKECRNTM-----FGHTNSVNHCRFS---------------PDDEL 757 (1249)
T ss_dssp EEEEEECSSS----SCCEEEEEETTSCEEEEETTSSSEEEEE-----CCCSSCEEEEEEC---------------SSTTE
T ss_pred EEEEEEecCC----CceEEEEEeCCCeEEEEECCCcchhhee-----cCCCCCEEEEEEe---------------cCCCE
Confidence 8899987542 3568889999999999998754332222 1111222223331 12236
Q ss_pred EEEEecCceEEEEEEe
Q psy14552 241 LYVGLQNGALLRMVVD 256 (290)
Q Consensus 241 L~iGl~dG~l~~~~~d 256 (290)
|..|-.||.+.-+.+.
T Consensus 758 l~s~s~dg~v~vwd~~ 773 (1249)
T 3sfz_A 758 LASCSADGTLRLWDVR 773 (1249)
T ss_dssp EEEEESSSEEEEEEGG
T ss_pred EEEEECCCeEEEEeCC
Confidence 9999999998888653
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.42 Score=49.26 Aligned_cols=158 Identities=11% Similarity=0.237 Sum_probs=92.3
Q ss_pred CceEEEEeeCCeEEEEEecCCCceec--------------CCCceE--EEEEeCCCEEEEEEeCCeEEEEEEcCCCC---
Q psy14552 86 QRQIVIALQGGRLIYFEMHPVSDKKE--------------SDKKKI--VRCAVNQRQIVIALQGGRLIYFEMHPETG--- 146 (290)
Q Consensus 86 ~~qv~ial~~g~i~~~~~~~~~~~~~--------------~~~~~I--i~as~~~~~l~Val~~~~i~~l~l~~~~~--- 146 (290)
.+.++.+-.+|.|-+..+... .+.. .....+ ++.+.++..+|+|..|++|+++.++....
T Consensus 447 g~~laSgs~DgtVrlWd~~~g-~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~ 525 (902)
T 2oaj_A 447 GTAFITGHSNGSVRIYDASHG-DIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSV 525 (902)
T ss_dssp EEEEEEEETTSEEEEEESSCC-TTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---
T ss_pred CcEEEEecCCCcEEEEECCCc-cccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCc
Confidence 456666777888887776532 2211 111224 33366788899999999999998864100
Q ss_pred -------C---------c------------------e---eeeeeee-cCcceeEEEeeeCCCCCccccEEEEEeCCCeE
Q psy14552 147 -------I---------L------------------D---ECSETIQ-MESEVLCMALSNAPSGEQMSRFLAVGLADNTV 188 (290)
Q Consensus 147 -------~---------l------------------~---~~~~~~~-l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v 188 (290)
. + . +.+..+. -...|.++++.+. . +|++|..||+|
T Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpd------G-~lAsgs~D~tv 598 (902)
T 2oaj_A 526 ENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNI------G-FVGIAYAAGSL 598 (902)
T ss_dssp ------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBT------S-EEEEEETTSEE
T ss_pred cccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCC------c-EEEEEeCCCcE
Confidence 0 0 0 0111122 3568888888642 4 99999999999
Q ss_pred EEEEeCCCCceeEeeEEecC----CcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeCC-CCc
Q psy14552 189 RLISLAPQDCLKQKNLQGLP----DLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQT-SGD 261 (290)
Q Consensus 189 ~i~~l~~~~~l~~~~~~~L~----~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~~-~~~ 261 (290)
++|.++....+.......+. ....++...-+... + + .....+|+.|..||.+.-|.+++. +|.
T Consensus 599 ~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~-~------D---g~~~~~l~sgs~D~tv~~wd~~p~~~g~ 666 (902)
T 2oaj_A 599 MLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYG-D------D---GYSSILMVCGTDMGEVITYKILPASGGK 666 (902)
T ss_dssp EEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECT-T------S---SSEEEEEEEEETTSEEEEEEEEECGGGC
T ss_pred EEEECCCCeEEEEeehhHhccccccceEEEEEEEEecC-C------C---CCcceEEEEEecCCcEEEEEEecCCCCc
Confidence 99998642221110111221 23556655532211 0 0 012467999999999999998543 454
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=95.25 E-value=1.5 Score=38.78 Aligned_cols=213 Identities=13% Similarity=0.126 Sum_probs=110.3
Q ss_pred CccCCCCeEEEEeeC---CCe--EEEEecC--CeEEEeecCcceeeeccCCCCCceEEEEeecCceEEEEe-eCCeEEEE
Q psy14552 30 GFYGTTPTLCCSAMG---DNS--IVQVYPD--GIRHIGAKNTTWKVSDKKESDKKKIVRCAVNQRQIVIAL-QGGRLIYF 101 (290)
Q Consensus 30 gf~~~~~Ti~~~~~~---~~~--ivQVt~~--~v~l~~~~~~~~~~~~~~~~~~~~Iv~as~n~~qv~ial-~~g~i~~~ 101 (290)
.|.++.+.|+++.-. ++. +..+.+. .++.+... +..+......+..+.+++++- .+|.+..+
T Consensus 56 ~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~----------~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 56 IPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQ----------KTMGADPCYLTTNGKNIVTANYSGGSITVF 125 (361)
T ss_dssp EECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEE----------ECSSSCEEEEEECSSEEEEEETTTTEEEEE
T ss_pred EECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEe----------ccCCCCcEEEEECCCEEEEEECCCCEEEEE
Confidence 566778888888874 233 2344443 23332111 112223333333555555554 35677777
Q ss_pred EecCCCceecCC------------------CceEEEEEeCCCEEEEEEe-CCeEEEEEEcCCCC----C-ceee----ee
Q psy14552 102 EMHPVSDKKESD------------------KKKIVRCAVNQRQIVIALQ-GGRLIYFEMHPETG----I-LDEC----SE 153 (290)
Q Consensus 102 ~~~~~~~~~~~~------------------~~~Ii~as~~~~~l~Val~-~~~i~~l~l~~~~~----~-l~~~----~~ 153 (290)
.++..+.+.... +..-++.+.++..++++.. ++.+.++.++...+ . +... ..
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 765433322110 0011233566777777764 67899999886322 2 3211 01
Q ss_pred eeecCcceeEEEeeeCCCCCccccEEEEEe-CCCeEEEEEeCCCCceeEeeEEe-cC---CcceEEEEEEecCCCCCCCC
Q psy14552 154 TIQMESEVLCMALSNAPSGEQMSRFLAVGL-ADNTVRLISLAPQDCLKQKNLQG-LP---DLAESLVMIEMGASDPTSSD 228 (290)
Q Consensus 154 ~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl-~dg~v~i~~l~~~~~l~~~~~~~-L~---~~p~Sl~~~~~~~~~~~~~~ 228 (290)
.......+..+.+.+. ..+++++. .++.+.+|.++ ...++.+.... .+ ..|..+.+..
T Consensus 206 ~~~~~~~~~~~~~spd------g~~l~v~~~~~~~v~v~~~~-~g~~~~~~~~~~~~~~~~~~~~i~~sp---------- 268 (361)
T 3scy_A 206 KVAPGSGPRHLIFNSD------GKFAYLINEIGGTVIAFRYA-DGMLDEIQTVAADTVNAQGSGDIHLSP---------- 268 (361)
T ss_dssp ECCTTCCEEEEEECTT------SSEEEEEETTTCEEEEEEEE-TTEEEEEEEEESCSSCCCCEEEEEECT----------
T ss_pred ecCCCCCCeEEEEcCC------CCEEEEEcCCCCeEEEEEec-CCceEEeEEEecCCCCCCCcccEEECC----------
Confidence 1222345666677542 35777777 58999999986 33344332222 11 1244444331
Q ss_pred CCCCCccCCceEEEEEecC--ceEEEEEEeCCCCcccccceEEecCcceEE
Q psy14552 229 EPAGPVTLGNLYLYVGLQN--GALLRMVVDQTSGDLSDNRMRYLGSRPVKL 277 (290)
Q Consensus 229 ~~~~~~~~~~~~L~iGl~d--G~l~~~~~d~~~~~l~~~~~~~lG~~pv~l 277 (290)
+++ +|+++-++ +.+.-|.++..++.+........|..|-.+
T Consensus 269 -------dg~-~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~ 311 (361)
T 3scy_A 269 -------DGK-YLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNF 311 (361)
T ss_dssp -------TSS-EEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEE
T ss_pred -------CCC-EEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceE
Confidence 233 57777765 888889998777765433333335555443
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.25 E-value=1.7 Score=39.40 Aligned_cols=104 Identities=8% Similarity=0.141 Sum_probs=65.9
Q ss_pred CceEEEEeeCCeEEEEEecCCCc---eecC-CCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeec--
Q psy14552 86 QRQIVIALQGGRLIYFEMHPVSD---KKES-DKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQM-- 157 (290)
Q Consensus 86 ~~qv~ial~~g~i~~~~~~~~~~---~~~~-~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l-- 157 (290)
..+++.+..+|.|..+.+..... +..+ ....+.+. +.++..++.|..|+.|+++.+.. +. ......+
T Consensus 182 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~--~~---~~~~~~~~~ 256 (437)
T 3gre_A 182 KSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF--NV---LIRSWSFGD 256 (437)
T ss_dssp CEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT--TE---EEEEEBCTT
T ss_pred CCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC--cc---EEEEEecCC
Confidence 66777778888888887654322 2211 12234333 34566788888899999998875 22 2223332
Q ss_pred CcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCC
Q psy14552 158 ESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQ 196 (290)
Q Consensus 158 ~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~ 196 (290)
...|.++.+.+.-. ....++++|..||.|.+|.+...
T Consensus 257 ~~~v~~~~~~~~~s--~~~~~l~s~~~dg~i~iwd~~~~ 293 (437)
T 3gre_A 257 HAPITHVEVCQFYG--KNSVIVVGGSSKTFLTIWNFVKG 293 (437)
T ss_dssp CEEEEEEEECTTTC--TTEEEEEEESTTEEEEEEETTTT
T ss_pred CCceEEEEeccccC--CCccEEEEEcCCCcEEEEEcCCC
Confidence 34577776654311 13568999999999999998643
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=95.25 E-value=1.3 Score=40.71 Aligned_cols=148 Identities=8% Similarity=0.045 Sum_probs=83.2
Q ss_pred ceEEEEeeCCeEEEEEecCC-------Cceec-----CCCceEEEE--EeCCC-EEEEEEeCCeEEEEEEcCCCCCceee
Q psy14552 87 RQIVIALQGGRLIYFEMHPV-------SDKKE-----SDKKKIVRC--AVNQR-QIVIALQGGRLIYFEMHPETGILDEC 151 (290)
Q Consensus 87 ~qv~ial~~g~i~~~~~~~~-------~~~~~-----~~~~~Ii~a--s~~~~-~l~Val~~~~i~~l~l~~~~~~l~~~ 151 (290)
..++.+..+|.|..+.+... ..+.+ .....+.+. +.++. .++.|..|+.|+++.+... ......
T Consensus 142 ~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~ 220 (430)
T 2xyi_A 142 CVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINAT-PKEHRV 220 (430)
T ss_dssp EEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSC-CBGGGE
T ss_pred cEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCC-CCCCce
Confidence 35555566788888887641 11111 111122112 33344 6777777999999988751 111111
Q ss_pred ---eeee-ecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEE-ecCCcceEEEEEEecCCCCCC
Q psy14552 152 ---SETI-QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQ-GLPDLAESLVMIEMGASDPTS 226 (290)
Q Consensus 152 ---~~~~-~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~-~L~~~p~Sl~~~~~~~~~~~~ 226 (290)
.... .-...|.++++.+. ...++++|..||.|.+|.+........+... .-...+.++....
T Consensus 221 ~~~~~~~~~h~~~v~~v~~~p~-----~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p-------- 287 (430)
T 2xyi_A 221 IDAKNIFTGHTAVVEDVAWHLL-----HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNP-------- 287 (430)
T ss_dssp EECSEEECCCSSCEEEEEECSS-----CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECS--------
T ss_pred eccceeecCCCCCEeeeEEeCC-----CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCC--------
Confidence 1111 23456888888653 2568889999999999998643211111111 1222344444332
Q ss_pred CCCCCCCccCCceEEEEEecCceEEEEEEeC
Q psy14552 227 SDEPAGPVTLGNLYLYVGLQNGALLRMVVDQ 257 (290)
Q Consensus 227 ~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~ 257 (290)
.+...|..|-.||.+.-|.+..
T Consensus 288 ---------~~~~~l~tg~~dg~v~vwd~~~ 309 (430)
T 2xyi_A 288 ---------YSEFILATGSADKTVALWDLRN 309 (430)
T ss_dssp ---------SCTTEEEEEETTSEEEEEETTC
T ss_pred ---------CCCCEEEEEeCCCeEEEEeCCC
Confidence 2344588999999998887643
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=95.24 E-value=1.7 Score=39.34 Aligned_cols=110 Identities=13% Similarity=0.140 Sum_probs=64.5
Q ss_pred eEEEEeec--CceEEEEeeCCeEEEEEecCCCc---eecCCCceEEEEEe-CCCEEEEEEeCCeEEEEEEcCCCCCceee
Q psy14552 78 KIVRCAVN--QRQIVIALQGGRLIYFEMHPVSD---KKESDKKKIVRCAV-NQRQIVIALQGGRLIYFEMHPETGILDEC 151 (290)
Q Consensus 78 ~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~---~~~~~~~~Ii~as~-~~~~l~Val~~~~i~~l~l~~~~~~l~~~ 151 (290)
.|.+++.+ ..+++.+-.+|.|....+..... +.......-++.+. ++..++.|..|+.|+++.+.. +.+...
T Consensus 167 ~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~--~~~~~~ 244 (393)
T 1erj_A 167 DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET--GFLVER 244 (393)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTT--CCEEEE
T ss_pred CEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCC--CcEEEe
Confidence 45555543 56677777778887776543211 11112211122233 456688888899999998764 322221
Q ss_pred eee-----eecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCC
Q psy14552 152 SET-----IQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAP 195 (290)
Q Consensus 152 ~~~-----~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~ 195 (290)
+.. ..-...|.++++.+. ..+|+.|..||.|.+|.+..
T Consensus 245 ~~~~~~~~~~h~~~v~~v~~~~~------g~~l~s~s~d~~v~~wd~~~ 287 (393)
T 1erj_A 245 LDSENESGTGHKDSVYSVVFTRD------GQSVVSGSLDRSVKLWNLQN 287 (393)
T ss_dssp EC------CCCSSCEEEEEECTT------SSEEEEEETTSEEEEEEC--
T ss_pred ecccccCCCCCCCCEEEEEECCC------CCEEEEEeCCCEEEEEECCC
Confidence 110 012456888888642 46899999999999999864
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.56 Score=41.50 Aligned_cols=109 Identities=8% Similarity=0.070 Sum_probs=68.3
Q ss_pred CCCEEEEEEeCCeEEEEEEcCCCCCceeeeeee-----------ecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEE
Q psy14552 123 NQRQIVIALQGGRLIYFEMHPETGILDECSETI-----------QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLI 191 (290)
Q Consensus 123 ~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~-----------~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~ 191 (290)
++..++.|..|+.|+++.++.. ......... .....|.++++.+. ...+++.|..||.+.+|
T Consensus 55 ~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~s~~~d~~i~iw 127 (408)
T 4a11_B 55 EGRYMLSGGSDGVIVLYDLENS--SRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH-----DTGMFTSSSFDKTLKVW 127 (408)
T ss_dssp TCCEEEEEETTSCEEEEECCCC--SSSSCEEECEEEEECTTCTTCCSSCEEEEEECTT-----CTTCEEEEETTSEEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCC--cccceEeccccccccccccccCCCcEEEEEEccC-----CCcEEEEEeCCCeEEEe
Confidence 5667888888999999988752 111111100 14567888888653 24688899999999999
Q ss_pred EeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEe
Q psy14552 192 SLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 192 ~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d 256 (290)
.++... ............++..... .....++++|..||.+.-|.+.
T Consensus 128 d~~~~~---~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~v~~~d~~ 174 (408)
T 4a11_B 128 DTNTLQ---TADVFNFEETVYSHHMSPV---------------STKHCLVAVGTRGPKVQLCDLK 174 (408)
T ss_dssp ETTTTE---EEEEEECSSCEEEEEECSS---------------CSSCCEEEEEESSSSEEEEESS
T ss_pred eCCCCc---cceeccCCCceeeeEeecC---------------CCCCcEEEEEcCCCeEEEEeCC
Confidence 987432 2222233333333333321 1234469999999999888664
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.21 Score=46.10 Aligned_cols=108 Identities=9% Similarity=0.151 Sum_probs=64.6
Q ss_pred CCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEee
Q psy14552 124 QRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKN 203 (290)
Q Consensus 124 ~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~ 203 (290)
...++.|..|+.|++..++. +..........-...|.++++.+.+ ..+|+.|..||+|.+|.+... .+....
T Consensus 132 ~~~lasGs~dg~i~lWd~~~--~~~~~~~~~~gH~~~V~~l~f~p~~-----~~~l~s~s~D~~v~iwd~~~~-~~~~~~ 203 (435)
T 4e54_B 132 PSTVAVGSKGGDIMLWNFGI--KDKPTFIKGIGAGGSITGLKFNPLN-----TNQFYASSMEGTTRLQDFKGN-ILRVFA 203 (435)
T ss_dssp TTCEEEEETTSCEEEECSSC--CSCCEEECCCSSSCCCCEEEECSSC-----TTEEEEECSSSCEEEEETTSC-EEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCC--CCceeEEEccCCCCCEEEEEEeCCC-----CCEEEEEeCCCEEEEeeccCC-ceeEEe
Confidence 44588888899999997764 2211211111124679999997542 468999999999999998632 222221
Q ss_pred EEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEe
Q psy14552 204 LQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 204 ~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d 256 (290)
........+..+.+. ....+|..|-.||.+.-+.++
T Consensus 204 --~~~~~~~~~~~~~~~---------------~~~~~l~~g~~dg~i~~wd~~ 239 (435)
T 4e54_B 204 --SSDTINIWFCSLDVS---------------ASSRMVVTGDNVGNVILLNMD 239 (435)
T ss_dssp --CCSSCSCCCCCEEEE---------------TTTTEEEEECSSSBEEEEESS
T ss_pred --ccCCCCccEEEEEEC---------------CCCCEEEEEeCCCcEeeeccC
Confidence 111111111112221 123468999999999888653
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=95.12 E-value=1.3 Score=37.58 Aligned_cols=114 Identities=14% Similarity=0.120 Sum_probs=68.9
Q ss_pred EEEEee--cCceEEEEeeCCeEEEEEecCCC-ceec-----CCCceEEEEE--e--CCCEEEEEEeCCeEEEEEEcCCCC
Q psy14552 79 IVRCAV--NQRQIVIALQGGRLIYFEMHPVS-DKKE-----SDKKKIVRCA--V--NQRQIVIALQGGRLIYFEMHPETG 146 (290)
Q Consensus 79 Iv~as~--n~~qv~ial~~g~i~~~~~~~~~-~~~~-----~~~~~Ii~as--~--~~~~l~Val~~~~i~~l~l~~~~~ 146 (290)
|.+++. +.++++.+..+|.|..+.+.... .+.. .....|.+.+ . ++..++.+..|+.|+++.+.....
T Consensus 14 v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~ 93 (351)
T 3f3f_A 14 VHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQE 93 (351)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSC
T ss_pred eeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcc
Confidence 444444 35677777778888888776432 2221 1222243333 2 356788888899999999875210
Q ss_pred Cc--e--eeeeee-ecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCC
Q psy14552 147 IL--D--ECSETI-QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQ 196 (290)
Q Consensus 147 ~l--~--~~~~~~-~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~ 196 (290)
.. . ...... .-...|.++++.+.. ...++++|..||.+.+|.+...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~l~~~~~dg~v~iwd~~~~ 144 (351)
T 3f3f_A 94 ECSGRRWNKLCTLNDSKGSLYSVKFAPAH----LGLKLACLGNDGILRLYDALEP 144 (351)
T ss_dssp TTSSCSEEEEEEECCCSSCEEEEEECCGG----GCSEEEEEETTCEEEEEECSST
T ss_pred cccccCcceeeeecccCCceeEEEEcCCC----CCcEEEEecCCCcEEEecCCCh
Confidence 00 0 111112 245678888886431 1578999999999999998643
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=95.11 E-value=1.6 Score=38.48 Aligned_cols=98 Identities=16% Similarity=0.198 Sum_probs=58.2
Q ss_pred ceEEEEeeCCeEEEEEecCCC--ceecCCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCccee
Q psy14552 87 RQIVIALQGGRLIYFEMHPVS--DKKESDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVL 162 (290)
Q Consensus 87 ~qv~ial~~g~i~~~~~~~~~--~~~~~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~ 162 (290)
++++.+-.+|.|..+...... .+.. ....+.+. +.++..++.|..|+.|+++.+... ... .........|.
T Consensus 185 ~~l~s~~~d~~i~iwd~~~~~~~~~~~-h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~-~~~---~~~~~~~~~v~ 259 (343)
T 2xzm_R 185 PYFASVGWDGRLKVWNTNFQIRYTFKA-HESNVNHLSISPNGKYIATGGKDKKLLIWDILNL-TYP---QREFDAGSTIN 259 (343)
T ss_dssp CEEEEEETTSEEEEEETTTEEEEEEEC-CSSCEEEEEECTTSSEEEEEETTCEEEEEESSCC-SSC---SEEEECSSCEE
T ss_pred CEEEEEcCCCEEEEEcCCCceeEEEcC-ccccceEEEECCCCCEEEEEcCCCeEEEEECCCC-ccc---ceeecCCCcEE
Confidence 467777778887766522100 1111 11224333 456777888888999999988431 211 12233456788
Q ss_pred EEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCC
Q psy14552 163 CMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQ 196 (290)
Q Consensus 163 ~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~ 196 (290)
++++.+. ..++++|. |+.+.+|.+...
T Consensus 260 ~v~~sp~------~~~la~~~-d~~v~iw~~~~~ 286 (343)
T 2xzm_R 260 QIAFNPK------LQWVAVGT-DQGVKIFNLMTQ 286 (343)
T ss_dssp EEEECSS------SCEEEEEE-SSCEEEEESSSC
T ss_pred EEEECCC------CCEEEEEC-CCCEEEEEeCCC
Confidence 8888643 35676664 777999998643
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=95.07 E-value=2 Score=39.23 Aligned_cols=149 Identities=12% Similarity=0.174 Sum_probs=91.3
Q ss_pred CCceEEEEeecCceEEEEeeCCeEEEEEecCCCceec-CCC-ceEEEEEeCCCEEEEEEeCCeEEEEEEcCCCCCceeee
Q psy14552 75 DKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKE-SDK-KKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECS 152 (290)
Q Consensus 75 ~~~~Iv~as~n~~qv~ial~~g~i~~~~~~~~~~~~~-~~~-~~Ii~as~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~ 152 (290)
....|.+.+.++.+++.+..+|.|..+.+........ ..+ ..+.+.+.++..++.+..|+.|+++.+.. +.. .
T Consensus 238 ~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~---~ 312 (445)
T 2ovr_B 238 HVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVET--GNC---I 312 (445)
T ss_dssp CSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTT--CCE---E
T ss_pred CcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCC--CCE---E
Confidence 3456777778888999999999998887653321111 111 22444456777888888899999998865 321 1
Q ss_pred eeee-cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCC
Q psy14552 153 ETIQ-MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPA 231 (290)
Q Consensus 153 ~~~~-l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~ 231 (290)
.... -...+.++++. ..++++|..||.+.+|.+.....+.... ....-...+.-+.+
T Consensus 313 ~~~~~~~~~v~~~~~~--------~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~~~~v~~~~~------------ 370 (445)
T 2ovr_B 313 HTLTGHQSLTSGMELK--------DNILVSGNADSTVKIWDIKTGQCLQTLQ--GPNKHQSAVTCLQF------------ 370 (445)
T ss_dssp EEECCCCSCEEEEEEE--------TTEEEEEETTSCEEEEETTTCCEEEEEC--STTSCSSCEEEEEE------------
T ss_pred EEEcCCcccEEEEEEe--------CCEEEEEeCCCeEEEEECCCCcEEEEEc--cCCCCCCCEEEEEE------------
Confidence 1222 23455566552 4589999999999999986433322221 10011122222332
Q ss_pred CCccCCceEEEEEecCceEEEEEE
Q psy14552 232 GPVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 232 ~~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
.+ .+|+.|-.||.+.-|.+
T Consensus 371 ----~~-~~l~s~~~dg~v~iwd~ 389 (445)
T 2ovr_B 371 ----NK-NFVITSSDDGTVKLWDL 389 (445)
T ss_dssp ----CS-SEEEEEETTSEEEEEET
T ss_pred ----CC-CEEEEEeCCCeEEEEEC
Confidence 12 36999999999887754
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.02 E-value=0.98 Score=46.51 Aligned_cols=98 Identities=12% Similarity=0.188 Sum_probs=63.1
Q ss_pred CceEEEEeeCCeEEEEEecCCCc-eecCCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCccee
Q psy14552 86 QRQIVIALQGGRLIYFEMHPVSD-KKESDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVL 162 (290)
Q Consensus 86 ~~qv~ial~~g~i~~~~~~~~~~-~~~~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~ 162 (290)
..+++.+..+|.|..+....... ...+....|.+. +. +..++.+..|++|++..+.. +.. +.....+..|.
T Consensus 29 g~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~--~~~---~~~~~~~~~V~ 102 (902)
T 2oaj_A 29 QNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYS--QKV---LTTVFVPGKIT 102 (902)
T ss_dssp TTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTT--CSE---EEEEECSSCEE
T ss_pred CCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCC--CcE---EEEEcCCCCEE
Confidence 45677777778877664432111 111222234232 34 44677777899999998875 322 23344567899
Q ss_pred EEEeeeCCCCCccccEEEEEeCCCeEEEEEeCC
Q psy14552 163 CMALSNAPSGEQMSRFLAVGLADNTVRLISLAP 195 (290)
Q Consensus 163 ~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~ 195 (290)
++++.+. ..++++|..||.|.+|.++.
T Consensus 103 ~v~~sp~------g~~l~sgs~dg~V~lwd~~~ 129 (902)
T 2oaj_A 103 SIDTDAS------LDWMLIGLQNGSMIVYDIDR 129 (902)
T ss_dssp EEECCTT------CSEEEEEETTSCEEEEETTT
T ss_pred EEEECCC------CCEEEEEcCCCcEEEEECCC
Confidence 9998643 57999999999999999864
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.92 E-value=1.8 Score=38.05 Aligned_cols=157 Identities=11% Similarity=0.078 Sum_probs=85.4
Q ss_pred ceEEEEeec--CceEEEEeeCCeEEEEEecCC----Cceec----CCC-ceEEEE--EeCCCEEEEEEeCCeEEEEEEcC
Q psy14552 77 KKIVRCAVN--QRQIVIALQGGRLIYFEMHPV----SDKKE----SDK-KKIVRC--AVNQRQIVIALQGGRLIYFEMHP 143 (290)
Q Consensus 77 ~~Iv~as~n--~~qv~ial~~g~i~~~~~~~~----~~~~~----~~~-~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~ 143 (290)
..|.+++.+ ..+++.+..+|.|....+... ..+.. ..+ ..+.++ +.++..++.|..|++|++..++.
T Consensus 59 ~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~ 138 (330)
T 2hes_X 59 KAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDE 138 (330)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCT
T ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccC
Confidence 345555554 456666667788877665321 01111 111 123222 44566788888899999999854
Q ss_pred CCCCceeeeeee-ecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCC
Q psy14552 144 ETGILDECSETI-QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGAS 222 (290)
Q Consensus 144 ~~~~l~~~~~~~-~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~ 222 (290)
. +.-.+..... .-...|.++.+.+. ..+|+.|.+||++.+|.+... ..+.+ ..+..-...+.-+.+...
T Consensus 139 ~-~~~~~~~~~~~~h~~~v~~v~~~p~------~~~l~s~s~D~~i~iW~~~~~-~~~~~--~~~~~h~~~v~~~~~~~~ 208 (330)
T 2hes_X 139 S-GEEYECISVLQEHSQDVKHVIWHPS------EALLASSSYDDTVRIWKDYDD-DWECV--AVLNGHEGTVWSSDFDKT 208 (330)
T ss_dssp T-CCCCEEEEEECCCSSCEEEEEECSS------SSEEEEEETTSCEEEEEEETT-EEEEE--EEECCCSSCEEEEEECCS
T ss_pred C-CCCeEEEEEeccCCCceEEEEECCC------CCEEEEEcCCCeEEEEECCCC-CeeEE--EEccCCCCcEEEEEecCC
Confidence 1 2111221222 23467888888653 468999999999999987532 11111 122211112222333211
Q ss_pred CCCCCCCCCCCccCCceEEEEEecCceEEEEEEe
Q psy14552 223 DPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d 256 (290)
....+|..|-.||.+.-+.+.
T Consensus 209 -------------~~~~~l~s~s~D~~v~iw~~~ 229 (330)
T 2hes_X 209 -------------EGVFRLCSGSDDSTVRVWKYM 229 (330)
T ss_dssp -------------SSSCEEEEEETTSCEEEEEEE
T ss_pred -------------CCeeEEEEEeCCCeEEEEEec
Confidence 223458888889988877763
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=94.91 E-value=1.4 Score=42.67 Aligned_cols=111 Identities=14% Similarity=0.174 Sum_probs=70.5
Q ss_pred EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCcee
Q psy14552 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLK 200 (290)
Q Consensus 121 s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~ 200 (290)
+.++..++.|..|++|+++.+.. +.+.+. ....-+..|.++++.+. ..+|+.|..|+.+.+|.+.....
T Consensus 457 spdg~~lasgs~D~~v~lwd~~~--~~~~~~-~~~~h~~~v~~v~fspd------g~~las~s~d~~v~~w~~~~~~~-- 525 (611)
T 1nr0_A 457 SNDKQFVAVGGQDSKVHVYKLSG--ASVSEV-KTIVHPAEITSVAFSNN------GAFLVATDQSRKVIPYSVANNFE-- 525 (611)
T ss_dssp CTTSCEEEEEETTSEEEEEEEET--TEEEEE-EEEECSSCEEEEEECTT------SSEEEEEETTSCEEEEEGGGTTE--
T ss_pred eCCCCEEEEeCCCCeEEEEEccC--Cceeee-eccCCCCceEEEEECCC------CCEEEEEcCCCCEEEEEcCCCCc--
Confidence 55677799998999999998875 333222 22345678999999753 47899999999999999863211
Q ss_pred EeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeC
Q psy14552 201 QKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQ 257 (290)
Q Consensus 201 ~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~ 257 (290)
.......+.-...+.-+.+. ....+|..|-.||.+.-+.++.
T Consensus 526 ~~~~~~~~~H~~~V~~v~fs---------------pdg~~lasgs~D~~v~lW~~~~ 567 (611)
T 1nr0_A 526 LAHTNSWTFHTAKVACVSWS---------------PDNVRLATGSLDNSVIVWNMNK 567 (611)
T ss_dssp ESCCCCCCCCSSCEEEEEEC---------------TTSSEEEEEETTSCEEEEETTC
T ss_pred eeeeeeeeecccceeEEEEC---------------CCCCEEEEEECCCcEEEEECCC
Confidence 11110111111223333332 1234688999999998887643
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.88 E-value=1.5 Score=37.03 Aligned_cols=140 Identities=6% Similarity=0.017 Sum_probs=81.6
Q ss_pred ecCceEEEEeeCCeEEEEEecCCCcee--cCCCceEEE--EEeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeee-ecC
Q psy14552 84 VNQRQIVIALQGGRLIYFEMHPVSDKK--ESDKKKIVR--CAVNQRQIVIALQGGRLIYFEMHPETGILDECSETI-QME 158 (290)
Q Consensus 84 ~n~~qv~ial~~g~i~~~~~~~~~~~~--~~~~~~Ii~--as~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~-~l~ 158 (290)
.++.+++.+..+|.|..+.+....... ......+.+ .+.++..++.+..|+.++++.+... ...... ... .-.
T Consensus 27 ~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~-~~~~~~-~~~~~~~ 104 (313)
T 3odt_A 27 VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFAT-SGEDPL-YTLIGHQ 104 (313)
T ss_dssp EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCC-TTSCC--CEECCCS
T ss_pred cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeec-CCCCcc-cchhhcc
Confidence 346677778788888887764321111 111222322 2566777888888999999887652 111111 112 235
Q ss_pred cceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCc
Q psy14552 159 SEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGN 238 (290)
Q Consensus 159 ~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~ 238 (290)
..|.++++. ..++++|..||.+.+|.. ....... ..-.....++.... ...
T Consensus 105 ~~i~~~~~~--------~~~l~~~~~d~~i~~~d~--~~~~~~~--~~~~~~v~~~~~~~-----------------~~~ 155 (313)
T 3odt_A 105 GNVCSLSFQ--------DGVVISGSWDKTAKVWKE--GSLVYNL--QAHNASVWDAKVVS-----------------FSE 155 (313)
T ss_dssp SCEEEEEEE--------TTEEEEEETTSEEEEEET--TEEEEEE--ECCSSCEEEEEEEE-----------------TTT
T ss_pred cCEEEEEec--------CCEEEEEeCCCCEEEEcC--CcEEEec--ccCCCceeEEEEcc-----------------CCC
Confidence 677788772 458999999999999982 1111111 11122233444443 123
Q ss_pred eEEEEEecCceEEEEE
Q psy14552 239 LYLYVGLQNGALLRMV 254 (290)
Q Consensus 239 ~~L~iGl~dG~l~~~~ 254 (290)
.+|+.|..||.+.-|.
T Consensus 156 ~~l~~~~~d~~i~i~d 171 (313)
T 3odt_A 156 NKFLTASADKTIKLWQ 171 (313)
T ss_dssp TEEEEEETTSCEEEEE
T ss_pred CEEEEEECCCCEEEEe
Confidence 3588999999988775
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=94.87 E-value=1.9 Score=38.02 Aligned_cols=155 Identities=12% Similarity=0.119 Sum_probs=84.4
Q ss_pred eEEEEeec--CceEEEEeeCCeEEEEEecCCCceec--CCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceee
Q psy14552 78 KIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKE--SDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDEC 151 (290)
Q Consensus 78 ~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~--~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~ 151 (290)
.|..++.+ ..+++-+-.+|.|....+........ .....+.++ +.++..++.+..|++|+++.+... .....
T Consensus 78 ~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~--~~~~~ 155 (343)
T 2xzm_R 78 FVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE--CKFSS 155 (343)
T ss_dssp CEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC--EEEEC
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC--ceeee
Confidence 34444443 45666666678887776653322211 112224333 455677888888999999987531 11010
Q ss_pred eeeeecCcceeEEEeeeCCCC----CccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCC
Q psy14552 152 SETIQMESEVLCMALSNAPSG----EQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSS 227 (290)
Q Consensus 152 ~~~~~l~~ei~~l~i~~~~~~----~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~ 227 (290)
.....-...+.++.+.+.... .....+++.|.+||.|.+|.... .... .+..-...+.-+.+.
T Consensus 156 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~----~~~~--~~~~h~~~v~~~~~s------- 222 (343)
T 2xzm_R 156 AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF----QIRY--TFKAHESNVNHLSIS------- 222 (343)
T ss_dssp CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT----EEEE--EEECCSSCEEEEEEC-------
T ss_pred ecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC----ceeE--EEcCccccceEEEEC-------
Confidence 000023456888888754311 01236899999999999998431 1111 111111122223331
Q ss_pred CCCCCCccCCceEEEEEecCceEEEEEE
Q psy14552 228 DEPAGPVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 228 ~~~~~~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
....+|..|-.||.+.-+.+
T Consensus 223 --------~~g~~l~sgs~dg~v~iwd~ 242 (343)
T 2xzm_R 223 --------PNGKYIATGGKDKKLLIWDI 242 (343)
T ss_dssp --------TTSSEEEEEETTCEEEEEES
T ss_pred --------CCCCEEEEEcCCCeEEEEEC
Confidence 12346889999999887766
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=94.87 E-value=2.3 Score=38.86 Aligned_cols=108 Identities=9% Similarity=0.106 Sum_probs=67.9
Q ss_pred ceEEEEeec--CceEEEEeeCCeEEEEEecCCCceec-CCCceEEEE-EeCCCEEEEEEeCCeEEEEEEcCCCCCceeee
Q psy14552 77 KKIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKE-SDKKKIVRC-AVNQRQIVIALQGGRLIYFEMHPETGILDECS 152 (290)
Q Consensus 77 ~~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~-~~~~~Ii~a-s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~ 152 (290)
..|.++..+ .++++.+..+|.|..+.+........ ..+...+.+ +.++..++.+..|+.|+++.+.. +. ..
T Consensus 311 ~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~--~~--~~- 385 (464)
T 3v7d_B 311 DRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAND--YS--RK- 385 (464)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTT--CC--EE-
T ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCC--Cc--ee-
Confidence 445555554 56888888889988887653221111 222222333 56677788888899999998875 21 21
Q ss_pred eeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCC
Q psy14552 153 ETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQ 196 (290)
Q Consensus 153 ~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~ 196 (290)
.....+..+.++.+.+. ..++++|. ||.+.+|.+...
T Consensus 386 ~~~~~~~~~~~~~~~~~------~~~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 386 FSYHHTNLSAITTFYVS------DNILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp EEEECTTCCCEEEEEEC------SSEEEEEE-TTEEEEEETTTC
T ss_pred eeecCCCCccEEEEEeC------CCEEEEec-CCeEEEEECCCC
Confidence 12334455666666543 46888887 999999998643
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=94.85 E-value=2.6 Score=39.51 Aligned_cols=143 Identities=12% Similarity=0.089 Sum_probs=81.4
Q ss_pred eEEEEee--cCceEEEEeeCCeEEEEEecCCCceec---CCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCcee
Q psy14552 78 KIVRCAV--NQRQIVIALQGGRLIYFEMHPVSDKKE---SDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDE 150 (290)
Q Consensus 78 ~Iv~as~--n~~qv~ial~~g~i~~~~~~~~~~~~~---~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~ 150 (290)
.|.+++. +..+++.+..+|.|..+..+ .+... .....+.+. +.++..++.+..|+.|+++.++. .+..
T Consensus 387 ~v~~~~~s~dg~~l~~~~~d~~v~~~~~~--~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~---~~~~ 461 (577)
T 2ymu_A 387 SVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG---QLLQ 461 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEECTT--CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS---CEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEeCC--CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC---CEEE
Confidence 4444443 34566666677777655432 22111 111223222 45667788888899999987543 2211
Q ss_pred eeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCC
Q psy14552 151 CSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEP 230 (290)
Q Consensus 151 ~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~ 230 (290)
. -..-...|.++++.+. ..+|+.|..|+.|.+|..+. ..+.... .-.....++.+.
T Consensus 462 ~--~~~~~~~v~~~~~spd------~~~las~~~d~~i~iw~~~~-~~~~~~~--~h~~~v~~l~~s------------- 517 (577)
T 2ymu_A 462 T--LTGHSSSVRGVAFSPD------GQTIASASDDKTVKLWNRNG-QLLQTLT--GHSSSVRGVAFS------------- 517 (577)
T ss_dssp E--EECCSSCEEEEEECTT------SCEEEEEETTSEEEEEETTS-CEEEEEE--CCSSCEEEEEEC-------------
T ss_pred E--EcCCCCCEEEEEEcCC------CCEEEEEeCCCEEEEEcCCC-CEEEEEe--CCCCCEEEEEEc-------------
Confidence 1 1224678888988643 46899999999999999642 2222221 111222333322
Q ss_pred CCCccCCceEEEEEecCceEEEEE
Q psy14552 231 AGPVTLGNLYLYVGLQNGALLRMV 254 (290)
Q Consensus 231 ~~~~~~~~~~L~iGl~dG~l~~~~ 254 (290)
....+|..|-.||.+.-|.
T Consensus 518 -----~dg~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 518 -----PDGQTIASASDDKTVKLWN 536 (577)
T ss_dssp -----TTSSCEEEEETTSEEEEEC
T ss_pred -----CCCCEEEEEECcCEEEEEe
Confidence 1223588999999877664
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=94.78 E-value=1.8 Score=37.35 Aligned_cols=115 Identities=17% Similarity=0.293 Sum_probs=65.0
Q ss_pred EeCCCEEEEEEe-CCe-EEEEEEcCCCCCceeee-eeeecCcceeEEEeeeCCCCCccccEEEEEeC-CCeEEEEEeCCC
Q psy14552 121 AVNQRQIVIALQ-GGR-LIYFEMHPETGILDECS-ETIQMESEVLCMALSNAPSGEQMSRFLAVGLA-DNTVRLISLAPQ 196 (290)
Q Consensus 121 s~~~~~l~Val~-~~~-i~~l~l~~~~~~l~~~~-~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~-dg~v~i~~l~~~ 196 (290)
+.++..++++.. ++. +.++.++.+ +.+.... ........+..+.+.+. ..+++++.+ ++.+.+|.++..
T Consensus 136 spdg~~l~~~~~~~~~~i~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~spd------g~~l~v~~~~~~~v~v~d~~~~ 208 (331)
T 3u4y_A 136 SPNGNGLILIDRSSANTVRRFKIDAD-GVLFDTGQEFISGGTRPFNITFTPD------GNFAFVANLIGNSIGILETQNP 208 (331)
T ss_dssp CTTSSCEEEEEETTTTEEEEEEECTT-CCEEEEEEEEECSSSSEEEEEECTT------SSEEEEEETTTTEEEEEECSST
T ss_pred CCCCCEEEEEecCCCceEEEEEECCC-CcEeecCCccccCCCCccceEECCC------CCEEEEEeCCCCeEEEEECCCC
Confidence 455556777655 467 999998863 4443321 12233455667777542 356666664 899999998644
Q ss_pred CceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEec-CceEEEEEEeCCCCcc
Q psy14552 197 DCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQ-NGALLRMVVDQTSGDL 262 (290)
Q Consensus 197 ~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~-dG~l~~~~~d~~~~~l 262 (290)
..+..+.....+..|..+.+.. ++. +|+++-+ ++.+.. +|..++.+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~sp-----------------dg~-~l~v~~~~~~~i~~--~d~~~~~~ 255 (331)
T 3u4y_A 209 ENITLLNAVGTNNLPGTIVVSR-----------------DGS-TVYVLTESTVDVFN--FNQLSGTL 255 (331)
T ss_dssp TSCEEEEEEECSSCCCCEEECT-----------------TSS-EEEEECSSEEEEEE--EETTTTEE
T ss_pred cccceeeeccCCCCCceEEECC-----------------CCC-EEEEEEcCCCEEEE--EECCCCce
Confidence 3323233334455666665442 233 4666654 555444 46666655
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=94.76 E-value=2.2 Score=38.32 Aligned_cols=109 Identities=10% Similarity=0.102 Sum_probs=62.0
Q ss_pred EeCCCEEEEEEeCC----eEEEEEEcCCCCCceeeeeeee---cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEe
Q psy14552 121 AVNQRQIVIALQGG----RLIYFEMHPETGILDECSETIQ---MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISL 193 (290)
Q Consensus 121 s~~~~~l~Val~~~----~i~~l~l~~~~~~l~~~~~~~~---l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l 193 (290)
+.++..++.+..++ .++...+.. ... ....... -...|.++++.+. ..+|++|..||+|.+|.+
T Consensus 228 spdg~~l~~~s~d~~~~~~i~~~~~~~--~~~-~~~~~~~~~~~~~~V~~~~~Spd------g~~lasgs~D~~V~iwd~ 298 (365)
T 4h5i_A 228 IADDTVLIAASLKKGKGIVLTKISIKS--GNT-SVLRSKQVTNRFKGITSMDVDMK------GELAVLASNDNSIALVKL 298 (365)
T ss_dssp EETTEEEEEEEESSSCCEEEEEEEEET--TEE-EEEEEEEEESSCSCEEEEEECTT------SCEEEEEETTSCEEEEET
T ss_pred cCCCCEEEEEecCCcceeEEeeccccc--cee-cceeeeeecCCCCCeEeEEECCC------CCceEEEcCCCEEEEEEC
Confidence 45566666665554 345555543 111 1111111 2456889998753 479999999999999998
Q ss_pred CCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeC
Q psy14552 194 APQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQ 257 (290)
Q Consensus 194 ~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~ 257 (290)
.. .+.+.. .+..=...+.-+.|. ....+|.-|=.||.+--+.+..
T Consensus 299 ~~---~~~~~~-~~~gH~~~V~~v~fS---------------pdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 299 KD---LSMSKI-FKQAHSFAITEVTIS---------------PDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp TT---TEEEEE-ETTSSSSCEEEEEEC---------------TTSCEEEEEETTSEEEEEECCT
T ss_pred CC---CcEEEE-ecCcccCCEEEEEEC---------------CCCCEEEEEeCCCeEEEEEcCC
Confidence 63 233321 122101122223331 1234688999999999898843
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=94.68 E-value=2.3 Score=38.17 Aligned_cols=154 Identities=12% Similarity=0.098 Sum_probs=85.1
Q ss_pred ceEEEEeec---CceEEEEeeCCeEEEEEecCCCc-eec-C-CCceE--EEEEeCCCEEEEEEeCCeEEEEEEcCCCCCc
Q psy14552 77 KKIVRCAVN---QRQIVIALQGGRLIYFEMHPVSD-KKE-S-DKKKI--VRCAVNQRQIVIALQGGRLIYFEMHPETGIL 148 (290)
Q Consensus 77 ~~Iv~as~n---~~qv~ial~~g~i~~~~~~~~~~-~~~-~-~~~~I--i~as~~~~~l~Val~~~~i~~l~l~~~~~~l 148 (290)
..|...+.+ ..+++-+-.+|.|....+..... ... . ....| ++.+.++..++.|..|++|+++.+.. +..
T Consensus 206 ~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~--~~~ 283 (380)
T 3iz6_a 206 ADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT--GHQ 283 (380)
T ss_dssp SCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTT--TEE
T ss_pred cCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCC--CcE
Confidence 345555553 45666777788888776542211 111 1 11123 22245667788887899999998765 221
Q ss_pred eeeeeeee-----cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecC--CcceEEEEEEecC
Q psy14552 149 DECSETIQ-----MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLP--DLAESLVMIEMGA 221 (290)
Q Consensus 149 ~~~~~~~~-----l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~--~~p~Sl~~~~~~~ 221 (290)
........ ....+.++++.+. ..++++|..||.+.+|.+.....+.......-+ ....++.+.
T Consensus 284 ~~~~~~~~~~~~~~~~~v~~~~~s~~------g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s---- 353 (380)
T 3iz6_a 284 LQVYNREPDRNDNELPIVTSVAFSIS------GRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLS---- 353 (380)
T ss_dssp EEEECCCCSSSCCSSCSCSEEEECSS------SSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEEC----
T ss_pred EEEecccccccccccCceEEEEECCC------CCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEEC----
Confidence 11111000 0113677887643 478999999999999997533222221100001 112333222
Q ss_pred CCCCCCCCCCCCccCCceEEEEEecCceEEEEEEe
Q psy14552 222 SDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d 256 (290)
....+|..|-.||.+.-+.+.
T Consensus 354 --------------~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 354 --------------SDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp --------------SSSSEEEEECTTSCEEEEECC
T ss_pred --------------CCCCEEEEeeCCCCEEEEecC
Confidence 123368999999999888653
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=94.65 E-value=0.6 Score=42.95 Aligned_cols=112 Identities=13% Similarity=0.179 Sum_probs=66.6
Q ss_pred CceEEEEeec---CceEEEEeeCCeEEEEEecCCC--ceec-CCC-ceEEEE--E-eCCCEEEEEEeCCeEEEEEEcCCC
Q psy14552 76 KKKIVRCAVN---QRQIVIALQGGRLIYFEMHPVS--DKKE-SDK-KKIVRC--A-VNQRQIVIALQGGRLIYFEMHPET 145 (290)
Q Consensus 76 ~~~Iv~as~n---~~qv~ial~~g~i~~~~~~~~~--~~~~-~~~-~~Ii~a--s-~~~~~l~Val~~~~i~~l~l~~~~ 145 (290)
..+|.+.+.+ +..++.+..+|.|....++... .... ..+ ..|.+. + .++..++.|..|++|++..+..
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~-- 196 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG-- 196 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTS--
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccC--
Confidence 4557777765 3457777788998877654221 1111 111 123222 3 3456677777799999998754
Q ss_pred CCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCC
Q psy14552 146 GILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAP 195 (290)
Q Consensus 146 ~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~ 195 (290)
+.+............+.++++.+. ..++++|..||.|.+|.++.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~g~~dg~i~~wd~~~ 240 (435)
T 4e54_B 197 NILRVFASSDTINIWFCSLDVSAS------SRMVVTGDNVGNVILLNMDG 240 (435)
T ss_dssp CEEEEEECCSSCSCCCCCEEEETT------TTEEEEECSSSBEEEEESSS
T ss_pred CceeEEeccCCCCccEEEEEECCC------CCEEEEEeCCCcEeeeccCc
Confidence 222111111123344667777542 47899999999999999863
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=94.63 E-value=1.4 Score=42.69 Aligned_cols=142 Identities=14% Similarity=0.095 Sum_probs=82.5
Q ss_pred CceEEEEeeCCeEEEEEecCCCceec----CCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeee-cC
Q psy14552 86 QRQIVIALQGGRLIYFEMHPVSDKKE----SDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQ-ME 158 (290)
Q Consensus 86 ~~qv~ial~~g~i~~~~~~~~~~~~~----~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~-l~ 158 (290)
..+++.+..+|.|..+.+.. ..+.. .....+.+. +.++..++.+..|++|+++.+... +.+... .... -.
T Consensus 460 g~~lasgs~D~~v~lwd~~~-~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~-~~~~~~-~~~~~H~ 536 (611)
T 1nr0_A 460 KQFVAVGGQDSKVHVYKLSG-ASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANN-FELAHT-NSWTFHT 536 (611)
T ss_dssp SCEEEEEETTSEEEEEEEET-TEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGT-TEESCC-CCCCCCS
T ss_pred CCEEEEeCCCCeEEEEEccC-CceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCC-Cceeee-eeeeecc
Confidence 56677777778887776642 22211 111123222 566777888888999999987641 222110 0011 24
Q ss_pred cceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCc-ceEEEEEEecCCCCCCCCCCCCCccCC
Q psy14552 159 SEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDL-AESLVMIEMGASDPTSSDEPAGPVTLG 237 (290)
Q Consensus 159 ~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~-p~Sl~~~~~~~~~~~~~~~~~~~~~~~ 237 (290)
..|.++++.+. ..+|+.|..|++|.+|.++...... . ..+..- ...+.-+.+.. ++
T Consensus 537 ~~V~~v~fspd------g~~lasgs~D~~v~lW~~~~~~~~~-~--~~~~~h~~~~v~~v~fs~--------------d~ 593 (611)
T 1nr0_A 537 AKVACVSWSPD------NVRLATGSLDNSVIVWNMNKPSDHP-I--IIKGAHAMSSVNSVIWLN--------------ET 593 (611)
T ss_dssp SCEEEEEECTT------SSEEEEEETTSCEEEEETTCTTSCC-E--EETTSSTTSCEEEEEEEE--------------TT
T ss_pred cceeEEEECCC------CCEEEEEECCCcEEEEECCCccccc-c--hhhccCcccCeeEEEEcC--------------CC
Confidence 67889998753 4789999999999999997432111 0 112211 22233333311 23
Q ss_pred ceEEEEEecCceEEEEEE
Q psy14552 238 NLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 238 ~~~L~iGl~dG~l~~~~~ 255 (290)
. |+-|-.||.+.-+.+
T Consensus 594 ~--l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 594 T--IVSAGQDSNIKFWNV 609 (611)
T ss_dssp E--EEEEETTSCEEEEEC
T ss_pred E--EEEecCCCCEEEEec
Confidence 3 888999998876654
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=94.50 E-value=2.1 Score=36.79 Aligned_cols=109 Identities=8% Similarity=0.144 Sum_probs=65.7
Q ss_pred EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCcee
Q psy14552 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLK 200 (290)
Q Consensus 121 s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~ 200 (290)
+.++..++.|..|+.|+++.+.. . .......-...+.++.+.+ ..++++|..|+.+.+|.++....+.
T Consensus 224 s~~~~~l~s~s~Dg~i~iwd~~~--~---~~~~~~~~~~~v~~~~~~~-------~~~~~~~~~d~~i~iwd~~~~~~~~ 291 (340)
T 4aow_A 224 SPDGSLCASGGKDGQAMLWDLNE--G---KHLYTLDGGDIINALCFSP-------NRYWLCAATGPSIKIWDLEGKIIVD 291 (340)
T ss_dssp CTTSSEEEEEETTCEEEEEETTT--T---EEEEEEECSSCEEEEEECS-------SSSEEEEEETTEEEEEETTTTEEEE
T ss_pred CCCCCEEEEEeCCCeEEEEEecc--C---ceeeeecCCceEEeeecCC-------CCceeeccCCCEEEEEECCCCeEEE
Confidence 45566788888899999998765 2 1223445566788887753 2345667779999999986432222
Q ss_pred EeeEEec----CCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEe
Q psy14552 201 QKNLQGL----PDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 201 ~~~~~~L----~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d 256 (290)
..+.... ..-+..+.-+.+. ....+|+.|-.||.+.-|++.
T Consensus 292 ~~~~~~~~~~~~~h~~~v~~l~~s---------------~dg~~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 292 ELKQEVISTSSKAEPPQCTSLAWS---------------ADGQTLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp EECCC-------CCCCCEEEEEEC---------------TTSSEEEEEETTSCEEEEEEE
T ss_pred eccccceeeeccCCCCCEEEEEEC---------------CCCCEEEEEeCCCEEEEEeCC
Confidence 2211111 1122233333331 123469999999999888764
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=94.48 E-value=5.3 Score=41.64 Aligned_cols=65 Identities=8% Similarity=0.130 Sum_probs=46.4
Q ss_pred EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCC
Q psy14552 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAP 195 (290)
Q Consensus 121 s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~ 195 (290)
+.++..+++|..++.|+++.+.. +..... ...-...|.++++.+. ..+++.|..||.+.+|.+..
T Consensus 970 sp~g~~l~~g~~~g~i~i~d~~~--~~~~~~--~~~h~~~v~~l~~s~d------g~~l~s~~~dg~i~vwd~~~ 1034 (1249)
T 3sfz_A 970 SPHLEYVAFGDEDGAIKIIELPN--NRVFSS--GVGHKKAVRHIQFTAD------GKTLISSSEDSVIQVWNWQT 1034 (1249)
T ss_dssp CTTSSEEEEEETTSCCEEEETTT--TSCEEE--CCCCSSCCCCEEECSS------SSCEEEECSSSBEEEEETTT
T ss_pred cCCCCEEEEEcCCCCEEEEEcCC--Cceeee--cccCCCceEEEEECCC------CCEEEEEcCCCEEEEEECCC
Confidence 45567789998899999998875 322111 1123567888888643 46899999999999999864
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.47 E-value=2.4 Score=37.31 Aligned_cols=110 Identities=16% Similarity=0.112 Sum_probs=63.6
Q ss_pred eEEEEeecCceEEEEeeCCeEEEEEecCCC-cee----cC-CCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCC---C
Q psy14552 78 KIVRCAVNQRQIVIALQGGRLIYFEMHPVS-DKK----ES-DKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPET---G 146 (290)
Q Consensus 78 ~Iv~as~n~~qv~ial~~g~i~~~~~~~~~-~~~----~~-~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~---~ 146 (290)
.|.+.+.+..+++.+-.+|.|..+.+.... ... .. ....|.+. +.++..++.|..|++|++..+.... .
T Consensus 16 ~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~ 95 (330)
T 2hes_X 16 KIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTF 95 (330)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------C
T ss_pred ceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccc
Confidence 355555555566666677888777664321 111 11 12234333 4556678888889999999875310 0
Q ss_pred Cceeeeeee-ecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeC
Q psy14552 147 ILDECSETI-QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLA 194 (290)
Q Consensus 147 ~l~~~~~~~-~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~ 194 (290)
.. +....+ .-...|.++++.+. ..+|+.|..||++.+|.++
T Consensus 96 ~~-~~~~~~~~h~~~V~~v~~sp~------g~~las~s~D~~v~iwd~~ 137 (330)
T 2hes_X 96 EM-DLLAIIEGHENEVKGVAWSND------GYYLATCSRDKSVWIWETD 137 (330)
T ss_dssp CC-EEEEEEC----CEEEEEECTT------SCEEEEEETTSCEEEEECC
T ss_pred cc-eeEEEEcCCCCcEEEEEECCC------CCEEEEEeCCCEEEEEecc
Confidence 11 111111 13467888988643 4689999999999999984
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=94.26 E-value=1.8 Score=39.01 Aligned_cols=142 Identities=10% Similarity=0.157 Sum_probs=79.2
Q ss_pred ceEEEEeeCCeEEEEEecCCCcee-------cCCCceEEEEEe---CCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeee
Q psy14552 87 RQIVIALQGGRLIYFEMHPVSDKK-------ESDKKKIVRCAV---NQRQIVIALQGGRLIYFEMHPETGILDECSETIQ 156 (290)
Q Consensus 87 ~qv~ial~~g~i~~~~~~~~~~~~-------~~~~~~Ii~as~---~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~ 156 (290)
.+++.+-.+|.|....+....... ......+.+.+. ++..++.|..|+.|+++.+... ....... ..
T Consensus 171 ~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~-~~~~~~~--~~ 247 (380)
T 3iz6_a 171 TRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT-SRAVRTY--HG 247 (380)
T ss_dssp SCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT-CCCCEEE--CC
T ss_pred CEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCC-CcceEEE--CC
Confidence 346666667777766544222111 111122333332 4556777778999999988641 2111111 12
Q ss_pred cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEec--C-C--cceEEEEEEecCCCCCCCCCCC
Q psy14552 157 MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGL--P-D--LAESLVMIEMGASDPTSSDEPA 231 (290)
Q Consensus 157 l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L--~-~--~p~Sl~~~~~~~~~~~~~~~~~ 231 (290)
-...|.++++.+. ..+++.|..||++.+|.+.....+.......- . . ...++.+.
T Consensus 248 h~~~v~~v~~~p~------~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-------------- 307 (380)
T 3iz6_a 248 HEGDINSVKFFPD------GQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFS-------------- 307 (380)
T ss_dssp CSSCCCEEEECTT------SSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEEC--------------
T ss_pred cCCCeEEEEEecC------CCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEEC--------------
Confidence 3467888888643 46899999999999999864333332211110 0 0 11233222
Q ss_pred CCccCCceEEEEEecCceEEEEEE
Q psy14552 232 GPVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 232 ~~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
....+|+.|..||.+.-+.+
T Consensus 308 ----~~g~~l~~g~~dg~i~vwd~ 327 (380)
T 3iz6_a 308 ----ISGRLLFAGYSNGDCYVWDT 327 (380)
T ss_dssp ----SSSSEEEEECTTSCEEEEET
T ss_pred ----CCCCEEEEEECCCCEEEEEC
Confidence 12346999999999887753
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=94.05 E-value=3 Score=36.89 Aligned_cols=154 Identities=10% Similarity=0.090 Sum_probs=81.1
Q ss_pred CceEEEEee-CCeEEEEEecCCCc-eecCCCceE--EEEEeCCCEEEEEE-eCCeEEEEEEcCCCCCceeeeeeeecCcc
Q psy14552 86 QRQIVIALQ-GGRLIYFEMHPVSD-KKESDKKKI--VRCAVNQRQIVIAL-QGGRLIYFEMHPETGILDECSETIQMESE 160 (290)
Q Consensus 86 ~~qv~ial~-~g~i~~~~~~~~~~-~~~~~~~~I--i~as~~~~~l~Val-~~~~i~~l~l~~~~~~l~~~~~~~~l~~e 160 (290)
..+++++.. ++.|..+.+..... ...+.+... ++.+.++..++++. .++.|+++.+.. +. ..........
T Consensus 127 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~--~~---~~~~~~~~~~ 201 (391)
T 1l0q_A 127 GKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT--NS---VIDTVKVEAA 201 (391)
T ss_dssp SSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT--TE---EEEEEECSSE
T ss_pred CCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCC--Ce---EEEEEecCCC
Confidence 445534433 56776665532211 111112222 22244566665554 478899887764 32 2233445667
Q ss_pred eeEEEeeeCCCCCccccEEEEEe---CCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCC
Q psy14552 161 VLCMALSNAPSGEQMSRFLAVGL---ADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLG 237 (290)
Q Consensus 161 i~~l~i~~~~~~~~~~~~l~VGl---~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~ 237 (290)
+.++.+.+. ..+++++. .++.+.+|.+... +.+.....+..|.++.+.. .+
T Consensus 202 ~~~~~~~~~------g~~l~~~~~~~~~~~v~~~d~~~~---~~~~~~~~~~~~~~~~~s~-----------------dg 255 (391)
T 1l0q_A 202 PSGIAVNPE------GTKAYVTNVDKYFNTVSMIDTGTN---KITARIPVGPDPAGIAVTP-----------------DG 255 (391)
T ss_dssp EEEEEECTT------SSEEEEEEECSSCCEEEEEETTTT---EEEEEEECCSSEEEEEECT-----------------TS
T ss_pred ccceEECCC------CCEEEEEecCcCCCcEEEEECCCC---eEEEEEecCCCccEEEEcc-----------------CC
Confidence 777777542 45777777 6899999998632 2222233344455544331 23
Q ss_pred ceEEE-EEecCceEEEEEEeCCCCcccccceEEecCcce
Q psy14552 238 NLYLY-VGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPV 275 (290)
Q Consensus 238 ~~~L~-iGl~dG~l~~~~~d~~~~~l~~~~~~~lG~~pv 275 (290)
. +|+ .+-.||.+.-+ |..++++. +....|..|.
T Consensus 256 ~-~l~~s~~~d~~v~v~--d~~~~~~~--~~~~~~~~~~ 289 (391)
T 1l0q_A 256 K-KVYVALSFXNTVSVI--DTATNTIT--ATMAVGKNPY 289 (391)
T ss_dssp S-EEEEEETTTTEEEEE--ETTTTEEE--EEEECSSSEE
T ss_pred C-EEEEEcCCCCEEEEE--ECCCCcEE--EEEECCcCCC
Confidence 3 354 44678887766 45556543 2344555553
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=94.00 E-value=2.7 Score=36.26 Aligned_cols=110 Identities=7% Similarity=0.062 Sum_probs=67.2
Q ss_pred CceEEEEeec---CceEEEEeeCCeEEEEEecCCCceec-----CCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCC
Q psy14552 76 KKKIVRCAVN---QRQIVIALQGGRLIYFEMHPVSDKKE-----SDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPET 145 (290)
Q Consensus 76 ~~~Iv~as~n---~~qv~ial~~g~i~~~~~~~~~~~~~-----~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~ 145 (290)
...|.+.+.+ ..+++.+..+|.|..+.+........ .....+.+. +.++..++.+..|+.|+++.+..
T Consensus 115 ~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-- 192 (366)
T 3k26_A 115 GNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS-- 192 (366)
T ss_dssp CSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCS--
T ss_pred CCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCC--
Confidence 3456666654 46677777788888887653322111 122234333 45566788888899999998764
Q ss_pred CCceeeee-------------------------e-eecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCC
Q psy14552 146 GILDECSE-------------------------T-IQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAP 195 (290)
Q Consensus 146 ~~l~~~~~-------------------------~-~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~ 195 (290)
+....... . ......|.++++. ..++++|..||.+.+|.+..
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--------~~~l~~~~~d~~i~~wd~~~ 260 (366)
T 3k26_A 193 KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--------GDLILSKSCENAIVCWKPGK 260 (366)
T ss_dssp HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--------TTEEEEECSSSEEEEEEESS
T ss_pred CccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--------CCEEEEEecCCEEEEEeCCC
Confidence 11100000 0 0034567777774 35899999999999999864
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.96 E-value=0.99 Score=44.30 Aligned_cols=111 Identities=16% Similarity=0.208 Sum_probs=63.9
Q ss_pred EEEEeec--CceEEEEeeCCeEEEEEecCCCceec--CCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeee
Q psy14552 79 IVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKE--SDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECS 152 (290)
Q Consensus 79 Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~--~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~ 152 (290)
|.+++.+ ..+++.+..+|.|....+........ .....|.++ +.++..++.+..|++|++..+... ....+.
T Consensus 433 v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~--~~~~~~ 510 (694)
T 3dm0_A 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE--CKYTIS 510 (694)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC--EEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCC--cceeec
Confidence 4444433 55666666678887776543211111 112224333 445667888888999999865431 100110
Q ss_pred ee-eecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCC
Q psy14552 153 ET-IQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAP 195 (290)
Q Consensus 153 ~~-~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~ 195 (290)
.. ..-...|.|+++.+.. ...+++.|.+||.|.+|.+..
T Consensus 511 ~~~~~h~~~v~~~~~~~~~----~~~~l~s~s~d~~v~vwd~~~ 550 (694)
T 3dm0_A 511 EGGEGHRDWVSCVRFSPNT----LQPTIVSASWDKTVKVWNLSN 550 (694)
T ss_dssp SSTTSCSSCEEEEEECSCS----SSCEEEEEETTSCEEEEETTT
T ss_pred cCCCCCCCcEEEEEEeCCC----CcceEEEEeCCCeEEEEECCC
Confidence 00 0123458899886532 246899999999999999864
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=93.87 E-value=3.1 Score=36.36 Aligned_cols=108 Identities=10% Similarity=0.131 Sum_probs=62.7
Q ss_pred eEEEEeec--CceEEEEeeCCeEEEEEecCCCceec-CCCc-eEEEEE--e------CCCEEEEEEeCCeEEEEEEcCCC
Q psy14552 78 KIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKE-SDKK-KIVRCA--V------NQRQIVIALQGGRLIYFEMHPET 145 (290)
Q Consensus 78 ~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~-~~~~-~Ii~as--~------~~~~l~Val~~~~i~~l~l~~~~ 145 (290)
.|.+++.+ ..+++.+-.+|.|....+... .... ..+. .+.+.. . ++..++.+..|+.|++..+..
T Consensus 109 ~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-- 185 (319)
T 3frx_A 109 DVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ-- 185 (319)
T ss_dssp CEEEEEECTTSCEEEEEETTSCEEEEETTSC-EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT--
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc--
Confidence 45555554 456666667787777665321 1111 1111 121112 1 123477777799999998765
Q ss_pred CCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCC
Q psy14552 146 GILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQ 196 (290)
Q Consensus 146 ~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~ 196 (290)
..+.. .-..-...|.++++.+. ..+|+.|..||.|.+|.+...
T Consensus 186 ~~~~~--~~~~h~~~v~~~~~sp~------g~~l~s~~~dg~i~iwd~~~~ 228 (319)
T 3frx_A 186 FQIEA--DFIGHNSNINTLTASPD------GTLIASAGKDGEIMLWNLAAK 228 (319)
T ss_dssp TEEEE--EECCCCSCEEEEEECTT------SSEEEEEETTCEEEEEETTTT
T ss_pred chhhe--eecCCCCcEEEEEEcCC------CCEEEEEeCCCeEEEEECCCC
Confidence 22111 11123567888888642 468999999999999998643
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=93.84 E-value=3.1 Score=36.32 Aligned_cols=144 Identities=8% Similarity=0.020 Sum_probs=79.0
Q ss_pred CceEEEEeeCCeEEEEEecCCCceec--CCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcce
Q psy14552 86 QRQIVIALQGGRLIYFEMHPVSDKKE--SDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEV 161 (290)
Q Consensus 86 ~~qv~ial~~g~i~~~~~~~~~~~~~--~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei 161 (290)
..+++-+-.+|.|....+........ .....+.+. +.++..++.|..|++|++..+.. ..+..+ ..-...+
T Consensus 77 g~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~--~~~~~~---~~h~~~v 151 (319)
T 3frx_A 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG--QCLATL---LGHNDWV 151 (319)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS--CEEEEE---CCCSSCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CeEEEE---eccCCcE
Confidence 55666666778887776643221111 111224333 34456688888899999998754 111111 1234567
Q ss_pred eEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEe-cCCcceEEEEEEecCCCCCCCCCCCCCccCCceE
Q psy14552 162 LCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQG-LPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLY 240 (290)
Q Consensus 162 ~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~-L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (290)
.++.+.+.........+++.|..||.+.+|.+... ....... -.....++... ....+
T Consensus 152 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~h~~~v~~~~~s------------------p~g~~ 210 (319)
T 3frx_A 152 SQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF---QIEADFIGHNSNINTLTAS------------------PDGTL 210 (319)
T ss_dssp EEEEECCC------CCEEEEEETTSCEEEEETTTT---EEEEEECCCCSCEEEEEEC------------------TTSSE
T ss_pred EEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc---hhheeecCCCCcEEEEEEc------------------CCCCE
Confidence 77777654221123458999999999999998642 1111111 11112222221 12346
Q ss_pred EEEEecCceEEEEEE
Q psy14552 241 LYVGLQNGALLRMVV 255 (290)
Q Consensus 241 L~iGl~dG~l~~~~~ 255 (290)
|..|-.||.+.-+.+
T Consensus 211 l~s~~~dg~i~iwd~ 225 (319)
T 3frx_A 211 IASAGKDGEIMLWNL 225 (319)
T ss_dssp EEEEETTCEEEEEET
T ss_pred EEEEeCCCeEEEEEC
Confidence 888999999887754
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=93.43 E-value=1.4 Score=41.08 Aligned_cols=110 Identities=15% Similarity=0.173 Sum_probs=62.7
Q ss_pred EeCCCEEEEEE----eCCeEEEEEEcCC-CC--Cceeeeeeee----cCcceeEEEeeeCCCCCccccEEEEEeCCCeEE
Q psy14552 121 AVNQRQIVIAL----QGGRLIYFEMHPE-TG--ILDECSETIQ----MESEVLCMALSNAPSGEQMSRFLAVGLADNTVR 189 (290)
Q Consensus 121 s~~~~~l~Val----~~~~i~~l~l~~~-~~--~l~~~~~~~~----l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~ 189 (290)
+.++..++|+. .|+.|+++.+... .+ .......... -...|.++++.+. ...+++.|..||+|.
T Consensus 101 spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~-----~~~~las~s~Dg~v~ 175 (434)
T 2oit_A 101 SCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPT-----VPSMVAVCLADGSIA 175 (434)
T ss_dssp CTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSS-----CTTEEEEEETTSCEE
T ss_pred cCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCC-----CCCEEEEEECCCeEE
Confidence 45566777632 3788999887531 00 0000001112 2567889988754 256899999999999
Q ss_pred EEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEE
Q psy14552 190 LISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 190 i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
+|.+.... ...........+.++.... . ..+|.+|..||.+.-|.+
T Consensus 176 iwD~~~~~--~~~~~~~~~~~v~~v~wsp-----------------d-g~~lasgs~dg~v~iwd~ 221 (434)
T 2oit_A 176 VLQVTETV--KVCATLPSTVAVTSVCWSP-----------------K-GKQLAVGKQNGTVVQYLP 221 (434)
T ss_dssp EEEESSSE--EEEEEECGGGCEEEEEECT-----------------T-SSCEEEEETTSCEEEECT
T ss_pred EEEcCCCc--ceeeccCCCCceeEEEEcC-----------------C-CCEEEEEcCCCcEEEEcc
Confidence 99986431 1111111112233333221 2 335899999999887754
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=93.41 E-value=3.6 Score=39.46 Aligned_cols=91 Identities=19% Similarity=0.251 Sum_probs=62.9
Q ss_pred ccEEEEEeC-CCeEEEEEeCCCCceeEeeEEecCC---------------cceEEEEEEecCCCCCCCCCCCCCccCCce
Q psy14552 176 SRFLAVGLA-DNTVRLISLAPQDCLKQKNLQGLPD---------------LAESLVMIEMGASDPTSSDEPAGPVTLGNL 239 (290)
Q Consensus 176 ~~~l~VGl~-dg~v~i~~l~~~~~l~~~~~~~L~~---------------~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (290)
..||.|+.| .+.|.+|.+.....++.+....++. -|+.+.+.. ++ -
T Consensus 332 GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp-----------------DG-k 393 (462)
T 2ece_A 332 DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR-----------------DG-R 393 (462)
T ss_dssp SCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT-----------------TS-S
T ss_pred CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC-----------------CC-C
Confidence 579999998 8899999985333455555555552 377776552 23 3
Q ss_pred EEEEEe--------------cCceEEEEEEeCCCCcccccc--eEEecCcceEEEEEEeCCcee
Q psy14552 240 YLYVGL--------------QNGALLRMVVDQTSGDLSDNR--MRYLGSRPVKLFKIRCQGNEA 287 (290)
Q Consensus 240 ~L~iGl--------------~dG~l~~~~~d~~~~~l~~~~--~~~lG~~pv~l~~~~~~~~~~ 287 (290)
+|++.- .++.++++.+|+.+| |+-.+ ..=.|. .+-+.++..|.-|
T Consensus 394 ~LyVaNsl~~~wd~Qfyp~~~~~~~~~~~vd~~~G-L~~~~~f~vdf~~--~~~h~~r~~ggd~ 454 (462)
T 2ece_A 394 RVYVTNSLYSTWDNQFYPEGLKGWMVKLNANPSGG-LEIDKEFFVDFGE--ARSHQVRLSGGDA 454 (462)
T ss_dssp EEEEECCCCHHHHHHHSTTCCCCEEEEEEECTTSC-EEEEEEEEEECTT--SEEEEEEETTCCT
T ss_pred EEEEEcCCcccccccccCCCCceEEEEEEecCCCC-ceeCCCEEeeccc--CcceeeecCCCCc
Confidence 599998 477888899999999 86433 233454 6677788877644
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=93.35 E-value=1.5 Score=38.41 Aligned_cols=112 Identities=14% Similarity=0.107 Sum_probs=66.8
Q ss_pred EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeee-cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCce
Q psy14552 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQ-MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCL 199 (290)
Q Consensus 121 s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~-l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l 199 (290)
+.++..++.|..|++|+++.+.. +.. .....+. -...|.++++.+.. ...+|+.|..|+++.+|.+.... .
T Consensus 22 s~~g~~lasgs~D~~v~lwd~~~--~~~-~~~~~l~gH~~~V~~v~~~~~~----~~~~l~s~s~D~~v~iWd~~~~~-~ 93 (316)
T 3bg1_A 22 DYYGTRLATCSSDRSVKIFDVRN--GGQ-ILIADLRGHEGPVWQVAWAHPM----YGNILASCSYDRKVIIWREENGT-W 93 (316)
T ss_dssp CGGGCEEEEEETTTEEEEEEEET--TEE-EEEEEEECCSSCEEEEEECCGG----GSSCEEEEETTSCEEEECCSSSC-C
T ss_pred cCCCCEEEEEeCCCeEEEEEecC--CCc-EEEEEEcCCCccEEEEEeCCCC----CCCEEEEEECCCEEEEEECCCCc-c
Confidence 45567788888899999998875 211 1111121 35678888885321 14689999999999999986321 1
Q ss_pred eEeeEE-ecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEe
Q psy14552 200 KQKNLQ-GLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 200 ~~~~~~-~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d 256 (290)
...... .-.....++.... . ....+|..|-.||.+.-+.+.
T Consensus 94 ~~~~~~~~h~~~V~~v~~~p---~-------------~~g~~lasgs~D~~i~lwd~~ 135 (316)
T 3bg1_A 94 EKSHEHAGHDSSVNSVCWAP---H-------------DYGLILACGSSDGAISLLTYT 135 (316)
T ss_dssp CEEEEECCCSSCCCEEEECC---T-------------TTCSCEEEECSSSCEEEEEEC
T ss_pred eEEEEccCCCCceEEEEECC---C-------------CCCcEEEEEcCCCCEEEEecC
Confidence 111111 1111223443321 1 123458899999998887764
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.33 E-value=1.8 Score=38.96 Aligned_cols=108 Identities=16% Similarity=0.181 Sum_probs=63.4
Q ss_pred eEEEEeec--CceEEEEeeCCeEEEEEecCCC-cee--------c-CCCceEEEE--EeCC-CEEEEEEeCCeEEEEEEc
Q psy14552 78 KIVRCAVN--QRQIVIALQGGRLIYFEMHPVS-DKK--------E-SDKKKIVRC--AVNQ-RQIVIALQGGRLIYFEMH 142 (290)
Q Consensus 78 ~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~-~~~--------~-~~~~~Ii~a--s~~~-~~l~Val~~~~i~~l~l~ 142 (290)
.|.+++.+ ..+++.+ .+|.|....+.... .+. . .....+.++ +.++ ..++.|..|+.|+++.+.
T Consensus 179 ~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~ 257 (447)
T 3dw8_B 179 HINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMR 257 (447)
T ss_dssp CCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred ceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECc
Confidence 34444443 4555555 78888877665211 111 1 111224333 3444 668888889999999887
Q ss_pred CCCCCc-eeeeeeeecC-------------cceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCC
Q psy14552 143 PETGIL-DECSETIQME-------------SEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAP 195 (290)
Q Consensus 143 ~~~~~l-~~~~~~~~l~-------------~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~ 195 (290)
. +.. .........+ ..|.++++.+. ..+|++|.. |.+.+|.+..
T Consensus 258 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------g~~l~~~~~-~~v~iwd~~~ 315 (447)
T 3dw8_B 258 A--SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHS------GRYMMTRDY-LSVKVWDLNM 315 (447)
T ss_dssp T--CSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTT------SSEEEEEES-SEEEEEETTC
T ss_pred C--CccccceeeEeccCCCccccccccccCceEEEEEECCC------CCEEEEeeC-CeEEEEeCCC
Confidence 5 221 0001122222 27888888752 468888888 9999999864
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.32 E-value=4 Score=39.88 Aligned_cols=96 Identities=16% Similarity=0.232 Sum_probs=58.9
Q ss_pred eEEEEeeCCeEEEEEecCCCc-e-----ecCCC-ceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeee-ec
Q psy14552 88 QIVIALQGGRLIYFEMHPVSD-K-----KESDK-KKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECSETI-QM 157 (290)
Q Consensus 88 qv~ial~~g~i~~~~~~~~~~-~-----~~~~~-~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~-~l 157 (290)
.++-+-.+|.|....+..... + ....+ ..+.++ +.++..++.|.+|++|++..+.. +.. .... .-
T Consensus 397 ~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~--~~~---~~~~~~h 471 (694)
T 3dm0_A 397 IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAA--GVS---TRRFVGH 471 (694)
T ss_dssp EEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--TEE---EEEEECC
T ss_pred EEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC--Ccc---eeEEeCC
Confidence 445555667777776643211 0 00111 123222 44566788888899999998865 321 1122 23
Q ss_pred CcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeC
Q psy14552 158 ESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLA 194 (290)
Q Consensus 158 ~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~ 194 (290)
...|.++++.+. ..+|+.|..||+|.+|.+.
T Consensus 472 ~~~v~~~~~s~~------~~~l~s~s~D~~i~iwd~~ 502 (694)
T 3dm0_A 472 TKDVLSVAFSLD------NRQIVSASRDRTIKLWNTL 502 (694)
T ss_dssp SSCEEEEEECTT------SSCEEEEETTSCEEEECTT
T ss_pred CCCEEEEEEeCC------CCEEEEEeCCCEEEEEECC
Confidence 567888888643 4678999999999999864
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=93.24 E-value=3.7 Score=35.34 Aligned_cols=160 Identities=9% Similarity=0.029 Sum_probs=90.4
Q ss_pred ceEEEEeec----CceEEEEeeCCeEEEEEecCCCceec----CCCceEEEEE--eC-------------CCEEEEEEeC
Q psy14552 77 KKIVRCAVN----QRQIVIALQGGRLIYFEMHPVSDKKE----SDKKKIVRCA--VN-------------QRQIVIALQG 133 (290)
Q Consensus 77 ~~Iv~as~n----~~qv~ial~~g~i~~~~~~~~~~~~~----~~~~~Ii~as--~~-------------~~~l~Val~~ 133 (290)
..|.+++.+ ..+++.+..+|.|..+.+.....+.. .....+.+++ .+ +..++.|..|
T Consensus 100 ~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D 179 (297)
T 2pm7_B 100 ASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD 179 (297)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETT
T ss_pred CceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCC
Confidence 346666655 35788888889988887754322211 1111232222 21 2458888889
Q ss_pred CeEEEEEEcCCCCCceeeeeeee-cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEec--CCc
Q psy14552 134 GRLIYFEMHPETGILDECSETIQ-MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGL--PDL 210 (290)
Q Consensus 134 ~~i~~l~l~~~~~~l~~~~~~~~-l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L--~~~ 210 (290)
++|+++.+... .........+. -...|.++++.+.. ....+|+.|..||++.+|.++..... .....+ ...
T Consensus 180 ~~v~lwd~~~~-~~~~~~~~~l~~H~~~V~~v~~sp~~---~~~~~las~s~D~~v~iWd~~~~~~~--~~~~~~~~~~~ 253 (297)
T 2pm7_B 180 NLVKIWKYNSD-AQTYVLESTLEGHSDWVRDVAWSPTV---LLRSYMASVSQDRTCIIWTQDNEQGP--WKKTLLKEEKF 253 (297)
T ss_dssp SCEEEEEEETT-TTEEEEEEEECCCSSCEEEEEECCCC---SSSEEEEEEETTSCEEEEEESSTTSC--CEEEESSSSCC
T ss_pred CcEEEEEEcCC-CceEEEEEEecCCCCceEEEEECCCC---CCceEEEEEECCCcEEEEEeCCCCCc--cceeeeecccC
Confidence 99999988752 11111111121 24568888886531 11468999999999999998643210 011112 122
Q ss_pred ceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeC
Q psy14552 211 AESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQ 257 (290)
Q Consensus 211 p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~ 257 (290)
+..+.-+.+.. . ..+|..|-.||.+.-+..+.
T Consensus 254 ~~~v~~~~~s~--------------~-g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 254 PDVLWRASWSL--------------S-GNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp SSCEEEEEECS--------------S-SCCEEEEETTSCEEEEEECT
T ss_pred CCcEEEEEECC--------------C-CCEEEEEcCCCcEEEEEECC
Confidence 33343344421 1 23588899999998887653
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=92.35 E-value=5.2 Score=34.81 Aligned_cols=120 Identities=15% Similarity=0.210 Sum_probs=71.3
Q ss_pred EEEEeCCCEEEEEE-eCCeEEEEEEcCCCCCceeeeeeeecC----------cceeEEEeeeCCCCCccccEEEEEeCCC
Q psy14552 118 VRCAVNQRQIVIAL-QGGRLIYFEMHPETGILDECSETIQME----------SEVLCMALSNAPSGEQMSRFLAVGLADN 186 (290)
Q Consensus 118 i~as~~~~~l~Val-~~~~i~~l~l~~~~~~l~~~~~~~~l~----------~ei~~l~i~~~~~~~~~~~~l~VGl~dg 186 (290)
++.+.++..++++. .++.+.++.++. .+.+..+ ...... ..+.++.+.+. + . .++.+..++
T Consensus 91 ~a~spdg~~l~~~~~~~~~v~v~~~~~-~g~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~spd--g---~-l~v~~~~~~ 162 (347)
T 3hfq_A 91 VAVDEARQLVYSANYHKGTAEVMKIAA-DGALTLT-DTVQHSGHGPRPEQDGSHIHYTDLTPD--N---R-LAVIDLGSD 162 (347)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECT-TSCEEEE-EEEECCCCCSSTTCSSCCEEEEEECTT--S---C-EEEEETTTT
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEeCC-CCCeeec-ceeecCCCCCCccccCCCceEEEECCC--C---c-EEEEeCCCC
Confidence 44466777788887 478899999875 2544332 222211 13666777542 2 3 444555689
Q ss_pred eEEEEEeCCCCceeEeeEEec--CCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeCCCCcc
Q psy14552 187 TVRLISLAPQDCLKQKNLQGL--PDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDL 262 (290)
Q Consensus 187 ~v~i~~l~~~~~l~~~~~~~L--~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~~~~~l 262 (290)
.+.+|.+++...+........ +.-|+.+.+.. +++..++.+..+|.+..|.++..++.+
T Consensus 163 ~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp-----------------dg~~l~v~~~~~~~v~v~~~~~~~g~~ 223 (347)
T 3hfq_A 163 KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP-----------------DGQYAFLAGELSSQIASLKYDTQTGAF 223 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT-----------------TSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC-----------------CCCEEEEEeCCCCEEEEEEecCCCCce
Confidence 999999975444554433332 34577654432 344323346788888888888766654
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=92.03 E-value=5.4 Score=34.27 Aligned_cols=104 Identities=10% Similarity=0.140 Sum_probs=62.3
Q ss_pred CceEEEEeeCCeEEEEEecCCC-ce--ecCCC-ceEEEEEe----CCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeee-
Q psy14552 86 QRQIVIALQGGRLIYFEMHPVS-DK--KESDK-KKIVRCAV----NQRQIVIALQGGRLIYFEMHPETGILDECSETIQ- 156 (290)
Q Consensus 86 ~~qv~ial~~g~i~~~~~~~~~-~~--~~~~~-~~Ii~as~----~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~- 156 (290)
..+++.+-.+|.|..+.++... .. ....+ ..+.+.+- ++..++-|..|++|++..+.. +..... ....
T Consensus 21 g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~--~~~~~~-~~~~~ 97 (297)
T 2pm7_B 21 GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN--GRWSQI-AVHAV 97 (297)
T ss_dssp SSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS--SCBCCC-EEECC
T ss_pred CCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC--CceEEE-EEeec
Confidence 4566666677888777764211 11 11112 22333332 245677777899999998864 222121 1121
Q ss_pred cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCC
Q psy14552 157 MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQ 196 (290)
Q Consensus 157 l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~ 196 (290)
-...|.++++.+.. ...+|++|..||.+.+|.+...
T Consensus 98 h~~~v~~v~~~p~~----~g~~l~s~s~d~~v~~wd~~~~ 133 (297)
T 2pm7_B 98 HSASVNSVQWAPHE----YGPMLLVASSDGKVSVVEFKEN 133 (297)
T ss_dssp CSSCEEEEEECCGG----GCSEEEEEETTSEEEEEEBCSS
T ss_pred CCCceeEEEeCcCC----CCcEEEEEECCCcEEEEEecCC
Confidence 34578888886532 2468999999999999998643
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=91.97 E-value=6.9 Score=35.38 Aligned_cols=138 Identities=7% Similarity=0.066 Sum_probs=77.8
Q ss_pred CceEEEEeeCCeEEEEEecCCCc---eecCCC-ceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeee-cC
Q psy14552 86 QRQIVIALQGGRLIYFEMHPVSD---KKESDK-KKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQ-ME 158 (290)
Q Consensus 86 ~~qv~ial~~g~i~~~~~~~~~~---~~~~~~-~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~-l~ 158 (290)
++.+++++ ++.|.......... +....+ ..|.+. +.++..+++|..|++|++..+.. +.. ..... -.
T Consensus 116 ~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~--~~~---~~~~~~h~ 189 (420)
T 4gga_A 116 GNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ--QKR---LRNMTSHS 189 (420)
T ss_dssp TSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT--TEE---EEEECCCS
T ss_pred CCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCC--CcE---EEEEeCCC
Confidence 45777776 77777665542211 111122 224333 45677899999999999998765 321 11221 24
Q ss_pred cceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCc
Q psy14552 159 SEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGN 238 (290)
Q Consensus 159 ~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~ 238 (290)
..+.+++.. ..+++.|..|+.+.++....... .+. .+..-...+....+. ...
T Consensus 190 ~~v~~~s~~--------~~~l~sgs~d~~i~~~d~~~~~~--~~~--~~~~h~~~~~~~~~~---------------~~g 242 (420)
T 4gga_A 190 ARVGSLSWN--------SYILSSGSRSGHIHHHDVRVAEH--HVA--TLSGHSQEVCGLRWA---------------PDG 242 (420)
T ss_dssp SCEEEEEEE--------TTEEEEEETTSEEEEEETTSSSC--EEE--EEECCSSCEEEEEEC---------------TTS
T ss_pred CceEEEeeC--------CCEEEEEeCCCceeEeeecccce--eeE--Eecccccceeeeeec---------------CCC
Confidence 456666542 46899999999999998653221 111 111111122222221 223
Q ss_pred eEEEEEecCceEEEEEEe
Q psy14552 239 LYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 239 ~~L~iGl~dG~l~~~~~d 256 (290)
.+|..|-.||.+.-+...
T Consensus 243 ~~l~s~~~D~~v~i~~~~ 260 (420)
T 4gga_A 243 RHLASGGNDNLVNVWPSA 260 (420)
T ss_dssp SEEEEEETTSCEEEEESS
T ss_pred CeeeeeeccccceEEeec
Confidence 468889999988777653
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=91.51 E-value=6.1 Score=33.87 Aligned_cols=107 Identities=11% Similarity=0.071 Sum_probs=60.5
Q ss_pred EeCCCEEEEEEeC-C--eEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEE-eCCCe-EEEEEeCC
Q psy14552 121 AVNQRQIVIALQG-G--RLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVG-LADNT-VRLISLAP 195 (290)
Q Consensus 121 s~~~~~l~Val~~-~--~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VG-l~dg~-v~i~~l~~ 195 (290)
+.++..++++..+ + .|.++.++. +. ..........+..+.+.+. ..+++++ ..++. +.+|.++.
T Consensus 92 s~dg~~l~~~~~~~~~~~i~v~d~~~--~~---~~~~~~~~~~~~~~~~spd------g~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 92 TPDDQFAVTVTGLNHPFNMQSYSFLK--NK---FISTIPIPYDAVGIAISPN------GNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp CTTSSEEEECCCSSSSCEEEEEETTT--TE---EEEEEECCTTEEEEEECTT------SSCEEEEEETTTTEEEEEEECT
T ss_pred CCCCCEEEEecCCCCcccEEEEECCC--CC---eEEEEECCCCccceEECCC------CCEEEEEecCCCceEEEEEECC
Confidence 5556666644334 3 788887654 32 2234455667777887643 2345555 45677 99999986
Q ss_pred CCceeEeeEE--ecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEE
Q psy14552 196 QDCLKQKNLQ--GLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 196 ~~~l~~~~~~--~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
...+...... ..+..|+.+.+.. ++...+..+..+|.+..|.+
T Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~sp-----------------dg~~l~v~~~~~~~v~v~d~ 205 (331)
T 3u4y_A 161 DGVLFDTGQEFISGGTRPFNITFTP-----------------DGNFAFVANLIGNSIGILET 205 (331)
T ss_dssp TCCEEEEEEEEECSSSSEEEEEECT-----------------TSSEEEEEETTTTEEEEEEC
T ss_pred CCcEeecCCccccCCCCccceEECC-----------------CCCEEEEEeCCCCeEEEEEC
Confidence 5544443222 2334566665432 33432344456787776754
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.46 E-value=6.8 Score=34.27 Aligned_cols=156 Identities=11% Similarity=0.088 Sum_probs=88.6
Q ss_pred ceEEEEeec----CceEEEEeeCCeEEEEEecCCCcee---cCCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCC
Q psy14552 77 KKIVRCAVN----QRQIVIALQGGRLIYFEMHPVSDKK---ESDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGI 147 (290)
Q Consensus 77 ~~Iv~as~n----~~qv~ial~~g~i~~~~~~~~~~~~---~~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~ 147 (290)
.+|.+++.+ +.+++.+..+|.|.++.+....... ......+.++ +.++..++.|..|+.|+++.+.. +.
T Consensus 126 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~--~~ 203 (343)
T 3lrv_A 126 NEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSS--PD 203 (343)
T ss_dssp SCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSC--TT
T ss_pred CCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC--CC
Confidence 456666554 4567777788999888876433221 1112223232 45566788888899999998875 22
Q ss_pred ceeeeeeeec--CcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCC
Q psy14552 148 LDECSETIQM--ESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPT 225 (290)
Q Consensus 148 l~~~~~~~~l--~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~ 225 (290)
.. ...... ...|.++++.+. ..+|+.|. |+.|.+|.+.....+..+........+..-..+.+.
T Consensus 204 ~~--~~~~~~~h~~~v~~l~fs~~------g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 269 (343)
T 3lrv_A 204 QA--SSRFPVDEEAKIKEVKFADN------GYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDID----- 269 (343)
T ss_dssp SC--CEECCCCTTSCEEEEEECTT------SSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEEC-----
T ss_pred CC--ccEEeccCCCCEEEEEEeCC------CCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEEC-----
Confidence 21 012222 568889988642 46888888 559999998654332221110001111110112221
Q ss_pred CCCCCCCCccCCceEEEEEec-CceEEEEEEeCC
Q psy14552 226 SSDEPAGPVTLGNLYLYVGLQ-NGALLRMVVDQT 258 (290)
Q Consensus 226 ~~~~~~~~~~~~~~~L~iGl~-dG~l~~~~~d~~ 258 (290)
....+|.+|.. ||.+.-|.++..
T Consensus 270 ----------~~g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 270 ----------DSGKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp ----------TTSSEEEEEETTTTEEEEEEECTT
T ss_pred ----------CCCCEEEEecCCCCcEEEEEEccc
Confidence 22346888888 998888887543
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=91.41 E-value=7 Score=34.38 Aligned_cols=146 Identities=8% Similarity=0.058 Sum_probs=77.4
Q ss_pred eEEEEeec--CceEEEEee-CCeEEEEEecCCCce-ecCCCceE--EEEEeCCCEEEEEEe-CCeEEEEEEcCCCCCcee
Q psy14552 78 KIVRCAVN--QRQIVIALQ-GGRLIYFEMHPVSDK-KESDKKKI--VRCAVNQRQIVIALQ-GGRLIYFEMHPETGILDE 150 (290)
Q Consensus 78 ~Iv~as~n--~~qv~ial~-~g~i~~~~~~~~~~~-~~~~~~~I--i~as~~~~~l~Val~-~~~i~~l~l~~~~~~l~~ 150 (290)
.+..++.. +++++++.. ++.|..+.+...... ....+..+ ++.+.++..++++.+ ++.|+++.+.. +..
T Consensus 75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~--~~~-- 150 (391)
T 1l0q_A 75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT--KAV-- 150 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTT--TEE--
T ss_pred CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCC--CcE--
Confidence 44444444 455655553 367776655422111 11122223 222455666755554 78899887754 322
Q ss_pred eeeeeecCcceeEEEeeeCCCCCccccEE-EEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCC
Q psy14552 151 CSETIQMESEVLCMALSNAPSGEQMSRFL-AVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDE 229 (290)
Q Consensus 151 ~~~~~~l~~ei~~l~i~~~~~~~~~~~~l-~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~ 229 (290)
.........+.++.+.+. ..++ +.+..+|.+.+|.+... +..........|.++.+..
T Consensus 151 -~~~~~~~~~~~~~~~~~d------g~~l~~~~~~~~~v~~~d~~~~---~~~~~~~~~~~~~~~~~~~----------- 209 (391)
T 1l0q_A 151 -INTVSVGRSPKGIAVTPD------GTKVYVANFDSMSISVIDTVTN---SVIDTVKVEAAPSGIAVNP----------- 209 (391)
T ss_dssp -EEEEECCSSEEEEEECTT------SSEEEEEETTTTEEEEEETTTT---EEEEEEECSSEEEEEEECT-----------
T ss_pred -EEEEecCCCcceEEECCC------CCEEEEEeCCCCEEEEEECCCC---eEEEEEecCCCccceEECC-----------
Confidence 233455667777777642 3455 45566999999998643 2222223344455543321
Q ss_pred CCCCccCCceEEEEEe---cCceEEEEEE
Q psy14552 230 PAGPVTLGNLYLYVGL---QNGALLRMVV 255 (290)
Q Consensus 230 ~~~~~~~~~~~L~iGl---~dG~l~~~~~ 255 (290)
.+ .+|+++- .+|.+..|.+
T Consensus 210 ------~g-~~l~~~~~~~~~~~v~~~d~ 231 (391)
T 1l0q_A 210 ------EG-TKAYVTNVDKYFNTVSMIDT 231 (391)
T ss_dssp ------TS-SEEEEEEECSSCCEEEEEET
T ss_pred ------CC-CEEEEEecCcCCCcEEEEEC
Confidence 22 3466666 6788876643
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=91.35 E-value=9.1 Score=35.57 Aligned_cols=96 Identities=18% Similarity=0.218 Sum_probs=57.2
Q ss_pred CCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEe
Q psy14552 123 NQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQK 202 (290)
Q Consensus 123 ~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~ 202 (290)
++..++|+ .++.|+++++... .+......+...+. ++.+. .+.+++++.||.|.+|.+.... +..
T Consensus 96 d~~~L~v~-~~~~l~v~dv~sl----~~~~~~~~~~~~v~--~i~~~------~p~~av~~~dG~L~v~dl~~~~-~~~- 160 (388)
T 1xip_A 96 HGDQVLVS-TRNALYSLDLEEL----SEFRTVTSFEKPVF--QLKNV------NNTLVILNSVNDLSALDLRTKS-TKQ- 160 (388)
T ss_dssp ETTEEEEE-ESSEEEEEESSST----TCEEEEEECSSCEE--EEEEC------SSEEEEEETTSEEEEEETTTCC-EEE-
T ss_pred CCCEEEEE-cCCcEEEEEchhh----hccCccceeeccee--eEEec------CCCEEEEECCCCEEEEEccCCc-ccc-
Confidence 77788888 8889999998752 22211122333343 33322 1238888999999999997433 222
Q ss_pred eEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeC
Q psy14552 203 NLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQ 257 (290)
Q Consensus 203 ~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~ 257 (290)
+....++++-.. .+ +.+|.+||.+.-|..+.
T Consensus 161 ----~~~~Vs~v~WSp-----------------kG---~~vg~~dg~i~~~~~~~ 191 (388)
T 1xip_A 161 ----LAQNVTSFDVTN-----------------SQ---LAVLLKDRSFQSFAWRN 191 (388)
T ss_dssp ----EEESEEEEEECS-----------------SE---EEEEETTSCEEEEEEET
T ss_pred ----ccCCceEEEEcC-----------------Cc---eEEEEcCCcEEEEcCCC
Confidence 112223333321 22 67899999998886543
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=91.21 E-value=6.9 Score=33.94 Aligned_cols=158 Identities=9% Similarity=-0.005 Sum_probs=84.8
Q ss_pred eEEEEeec----CceEEEEeeCCeEEEEEecCCCceec----CCC-ceE--EEEEeC-----------------CCEEEE
Q psy14552 78 KIVRCAVN----QRQIVIALQGGRLIYFEMHPVSDKKE----SDK-KKI--VRCAVN-----------------QRQIVI 129 (290)
Q Consensus 78 ~Iv~as~n----~~qv~ial~~g~i~~~~~~~~~~~~~----~~~-~~I--i~as~~-----------------~~~l~V 129 (290)
.|.+++.+ ..+++.+-.+|.|....+.....|.. ..+ ..+ ++-+.+ +..++.
T Consensus 105 ~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 184 (316)
T 3bg1_A 105 SVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFAS 184 (316)
T ss_dssp CCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEEC
T ss_pred ceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEE
Confidence 35555554 23667777788888777654434422 011 111 111111 234677
Q ss_pred EEeCCeEEEEEEcCCCCCceeeeeeee-cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCC--ceeEeeEEe
Q psy14552 130 ALQGGRLIYFEMHPETGILDECSETIQ-MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQD--CLKQKNLQG 206 (290)
Q Consensus 130 al~~~~i~~l~l~~~~~~l~~~~~~~~-l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~--~l~~~~~~~ 206 (290)
|..|+.|++..+... +..... ..+. -...|.++++.+.. .....+|+.|..||+|.+|.++... .........
T Consensus 185 gs~D~~v~lWd~~~~-~~~~~~-~~l~~h~~~V~~v~~sp~~--~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~ 260 (316)
T 3bg1_A 185 GGCDNLIKLWKEEED-GQWKEE-QKLEAHSDWVRDVAWAPSI--GLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHK 260 (316)
T ss_dssp CBTTSBCCEEEECTT-SCEEEE-ECCBCCSSCEEEEECCCCS--SCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEE
T ss_pred ecCCCeEEEEEeCCC-Ccccee-eecccCCCceEEEEecCCC--CCCCceEEEEcCCCeEEEEEccCccccchhhhhhhc
Confidence 767999999988641 222111 1121 24568888886532 1123689999999999999986411 100000011
Q ss_pred cCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeC
Q psy14552 207 LPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQ 257 (290)
Q Consensus 207 L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~ 257 (290)
.. ..+.-+.+.. ...+|..|-.||.+.-+..+.
T Consensus 261 ~~---~~v~~v~~sp---------------~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 261 FN---DVVWHVSWSI---------------TANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp CS---SCEEEEEECT---------------TTCCEEEEESSSCEEEEEECT
T ss_pred CC---CcEEEEEEcC---------------CCCEEEEEcCCCeEEEEEECC
Confidence 11 2233333321 123588899999998887653
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=91.11 E-value=4.3 Score=37.83 Aligned_cols=130 Identities=15% Similarity=0.163 Sum_probs=78.5
Q ss_pred CCeEEEEecCCeEEEeecCcc---------eee-eccCCCCCceEEEEeecCceEEEEeeCCeEEEEEecCCCc-eec-C
Q psy14552 45 DNSIVQVYPDGIRHIGAKNTT---------WKV-SDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSD-KKE-S 112 (290)
Q Consensus 45 ~~~ivQVt~~~v~l~~~~~~~---------~~~-~~~~~~~~~~Iv~as~n~~qv~ial~~g~i~~~~~~~~~~-~~~-~ 112 (290)
.|.++--.++++++.+.+.-. +.- ..++.|. |...+.++.+++++ .+|.|.++.+....+ ... .
T Consensus 49 ~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~---V~~l~fd~~~L~v~-~~~~l~v~dv~sl~~~~~~~~ 124 (388)
T 1xip_A 49 KSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD---VIFVCFHGDQVLVS-TRNALYSLDLEELSEFRTVTS 124 (388)
T ss_dssp TTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT---EEEEEEETTEEEEE-ESSEEEEEESSSTTCEEEEEE
T ss_pred CCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC---eeEEEECCCEEEEE-cCCcEEEEEchhhhccCccce
Confidence 355666667777765533111 110 1122232 66666666777777 899999988754332 111 1
Q ss_pred CCceEEEEEeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEE
Q psy14552 113 DKKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLIS 192 (290)
Q Consensus 113 ~~~~Ii~as~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~ 192 (290)
-...+.........+++++.|++|.++.+.. +.+. .+...++|++..+. + +++|..||.+..|.
T Consensus 125 ~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~--~~~~------~~~~~Vs~v~WSpk-----G---~~vg~~dg~i~~~~ 188 (388)
T 1xip_A 125 FEKPVFQLKNVNNTLVILNSVNDLSALDLRT--KSTK------QLAQNVTSFDVTNS-----Q---LAVLLKDRSFQSFA 188 (388)
T ss_dssp CSSCEEEEEECSSEEEEEETTSEEEEEETTT--CCEE------EEEESEEEEEECSS-----E---EEEEETTSCEEEEE
T ss_pred eecceeeEEecCCCEEEEECCCCEEEEEccC--Cccc------cccCCceEEEEcCC-----c---eEEEEcCCcEEEEc
Confidence 1122332233333488888899999999875 3321 13457999999743 2 78999999999997
Q ss_pred eC
Q psy14552 193 LA 194 (290)
Q Consensus 193 l~ 194 (290)
.+
T Consensus 189 ~~ 190 (388)
T 1xip_A 189 WR 190 (388)
T ss_dssp EE
T ss_pred CC
Confidence 65
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=90.62 E-value=9.4 Score=34.45 Aligned_cols=115 Identities=15% Similarity=0.172 Sum_probs=66.7
Q ss_pred CceEEEEeecCceEEEEeeCCeEEEEEecCCCceec--CCC-ceE--EEEEeCCCEEEEEEeCCeEEEEEEcCCCCCcee
Q psy14552 76 KKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKE--SDK-KKI--VRCAVNQRQIVIALQGGRLIYFEMHPETGILDE 150 (290)
Q Consensus 76 ~~~Iv~as~n~~qv~ial~~g~i~~~~~~~~~~~~~--~~~-~~I--i~as~~~~~l~Val~~~~i~~l~l~~~~~~l~~ 150 (290)
...+.+.+.+...++.+-.++.+............. ..+ ..+ +....++..++.+..|+.+++............
T Consensus 189 ~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~ 268 (420)
T 4gga_A 189 SARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP 268 (420)
T ss_dssp SSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCC
T ss_pred CCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccccccee
Confidence 345777778888887777788887665432221111 111 112 112345667888878999999877642111111
Q ss_pred eeeeeecCcceeEEEeeeCCCCCccccEEEEEe--CCCeEEEEEeCC
Q psy14552 151 CSETIQMESEVLCMALSNAPSGEQMSRFLAVGL--ADNTVRLISLAP 195 (290)
Q Consensus 151 ~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl--~dg~v~i~~l~~ 195 (290)
..........|.++.+.+.. ...+++|. .|+.|.+|.+..
T Consensus 269 ~~~~~~~~~~V~~~~~~p~~-----~~~la~~~gs~D~~I~iwd~~t 310 (420)
T 4gga_A 269 LQTFTQHQGAVKAVAWCPWQ-----SNVLATGGGTSDRHIRIWNVCS 310 (420)
T ss_dssp SEEECCCSSCEEEEEECTTC-----TTEEEEEECTTTCEEEEEETTT
T ss_pred eeeecccCCceeeeeeCCCc-----ccEEEEEeecCCCEEEEEeCCc
Confidence 11112345677888887543 45566554 599999999864
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=88.92 E-value=9.9 Score=32.23 Aligned_cols=85 Identities=18% Similarity=0.177 Sum_probs=47.7
Q ss_pred EEEEeCCCEEEEEEe-CCeEEEEEEcCCCCCceeeeeeeecCc------ceeEEEeeeCCCCCccccEEEEEe-------
Q psy14552 118 VRCAVNQRQIVIALQ-GGRLIYFEMHPETGILDECSETIQMES------EVLCMALSNAPSGEQMSRFLAVGL------- 183 (290)
Q Consensus 118 i~as~~~~~l~Val~-~~~i~~l~l~~~~~~l~~~~~~~~l~~------ei~~l~i~~~~~~~~~~~~l~VGl------- 183 (290)
++.+.++.+++++.. ++.|.++.+.. +.. ......+. .+..+.+.+. ..+++++.
T Consensus 39 ~~~s~dg~~l~v~~~~~~~v~~~d~~~--~~~---~~~~~~~~~~~~~~~~~~~~~s~d------g~~l~~~~~~~~~~~ 107 (337)
T 1pby_B 39 PMVAPGGRIAYATVNKSESLVKIDLVT--GET---LGRIDLSTPEERVKSLFGAALSPD------GKTLAIYESPVRLEL 107 (337)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTT--CCE---EEEEECCBTTEEEECTTCEEECTT------SSEEEEEEEEEEECS
T ss_pred eEEcCCCCEEEEEeCCCCeEEEEECCC--CCe---EeeEEcCCcccccccccceEECCC------CCEEEEEeccccccc
Confidence 333556667666654 57888877654 332 12333333 5556666532 35677775
Q ss_pred -----CCCeEEEEEeCCCCceeEeeEEecCCcceEEEE
Q psy14552 184 -----ADNTVRLISLAPQDCLKQKNLQGLPDLAESLVM 216 (290)
Q Consensus 184 -----~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~ 216 (290)
.++.+.+|.++. .+.......+..|.++.+
T Consensus 108 ~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~ 142 (337)
T 1pby_B 108 THFEVQPTRVALYDAET---LSRRKAFEAPRQITMLAW 142 (337)
T ss_dssp SCEEECCCEEEEEETTT---TEEEEEEECCSSCCCEEE
T ss_pred ccccccCceEEEEECCC---CcEEEEEeCCCCcceeEE
Confidence 468999998753 223333344556666653
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.41 E-value=8.3 Score=38.07 Aligned_cols=110 Identities=14% Similarity=0.198 Sum_probs=69.5
Q ss_pred CceEEEEeec--CceEEEEeeCCeEEEEEecCCCceecCC------CceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCC
Q psy14552 76 KKKIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKESD------KKKIVRC--AVNQRQIVIALQGGRLIYFEMHPET 145 (290)
Q Consensus 76 ~~~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~~~------~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~ 145 (290)
...|.+++-+ +.+++.+..+|++..+..+. .+...+ ...+-+. +.++..++.|..|++|+++.+..
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~-- 160 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRK-- 160 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCC--
T ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCC--
Confidence 4456666555 66788888888887775211 111111 1234222 57778899999999999999875
Q ss_pred CCcee----eeeeeec-----CcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCC
Q psy14552 146 GILDE----CSETIQM-----ESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQD 197 (290)
Q Consensus 146 ~~l~~----~~~~~~l-----~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~ 197 (290)
+.+.+ .++++.. ...|.++++.+. . +++|..|+++++|.++...
T Consensus 161 ~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd------g--Laass~D~tVrlWd~~~~~ 213 (588)
T 2j04_A 161 NSENTPEFYFESSIRLSDAGSKDWVTHIVWYED------V--LVAALSNNSVFSMTVSASS 213 (588)
T ss_dssp CTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT------E--EEEEETTCCEEEECCCSSS
T ss_pred CccccccceeeeeeecccccccccEEEEEEcCC------c--EEEEeCCCeEEEEECCCCc
Confidence 33311 1122221 247888888742 2 7888889999999987543
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=88.00 E-value=14 Score=32.73 Aligned_cols=154 Identities=12% Similarity=0.083 Sum_probs=87.3
Q ss_pred ceEEEEeecCceEEEEeeCCeEEEEEecCC-CceecCCCceEEEEEeCCCEEEEE--EeCCeEEEEEEcCCCCCc-----
Q psy14552 77 KKIVRCAVNQRQIVIALQGGRLIYFEMHPV-SDKKESDKKKIVRCAVNQRQIVIA--LQGGRLIYFEMHPETGIL----- 148 (290)
Q Consensus 77 ~~Iv~as~n~~qv~ial~~g~i~~~~~~~~-~~~~~~~~~~Ii~as~~~~~l~Va--l~~~~i~~l~l~~~~~~l----- 148 (290)
..|..+..+...++++ .++.+..+.+... .....-.. ..-.++.....++++ ..++.|+++.+... ...
T Consensus 101 ~~v~~v~~~~~~~~~~-~~~~i~i~d~~~~~~~~~~~~~-~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~-~~~~~~~~ 177 (355)
T 3vu4_A 101 APVKDLFLSREFIVVS-YGDVISVFKFGNPWKRITDDIR-FGGVCEFSNGLLVYSNEFNLGQIHITKLQSS-GSATTQDQ 177 (355)
T ss_dssp SCEEEEEECSSEEEEE-ETTEEEEEESSTTCCBSSCCEE-EEEEEEEETTEEEEEESSCTTCEEEEECCC----------
T ss_pred CceEEEEEcCCEEEEE-EcCEEEEEECCCCceeeEEecc-CCceEEEEccEEEEeCCCcCcEEEEEECCCC-Cccccccc
Confidence 3677778887777666 5777877766533 11111010 111122222566664 46889999887641 100
Q ss_pred -------eeeeeee-ecCcceeEEEeeeCCCCCccccEEEEEeCCCe-EEEEEeCCCCceeEeeEEecCCcceEEEEEEe
Q psy14552 149 -------DECSETI-QMESEVLCMALSNAPSGEQMSRFLAVGLADNT-VRLISLAPQDCLKQKNLQGLPDLAESLVMIEM 219 (290)
Q Consensus 149 -------~~~~~~~-~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~-v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~ 219 (290)
....... .-...|.++++.+. ..+|+.|..||+ +.+|.+.....+.... -+.-+..+.-+.+
T Consensus 178 ~~~~~~~~p~~~~~~~h~~~v~~~~~s~~------g~~l~s~s~d~~~v~iwd~~~~~~~~~~~---~g~h~~~v~~~~~ 248 (355)
T 3vu4_A 178 GVQQKAILGKGVLIKAHTNPIKMVRLNRK------SDMVATCSQDGTIIRVFKTEDGVLVREFR---RGLDRADVVDMKW 248 (355)
T ss_dssp ---------CCEEECCCSSCEEEEEECTT------SSEEEEEETTCSEEEEEETTTCCEEEEEE---CTTCCSCEEEEEE
T ss_pred cccccccCcccEEEEccCCceEEEEECCC------CCEEEEEeCCCCEEEEEECCCCcEEEEEE---cCCCCCcEEEEEE
Confidence 0000111 23567899998752 479999999998 9999986433333321 1112223333333
Q ss_pred cCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeC
Q psy14552 220 GASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQ 257 (290)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~ 257 (290)
. ....+|..|-.||.+.-|.+..
T Consensus 249 s---------------~~~~~l~s~s~d~~v~iw~~~~ 271 (355)
T 3vu4_A 249 S---------------TDGSKLAVVSDKWTLHVFEIFN 271 (355)
T ss_dssp C---------------TTSCEEEEEETTCEEEEEESSC
T ss_pred C---------------CCCCEEEEEECCCEEEEEEccC
Confidence 2 1234699999999999888743
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=87.46 E-value=20 Score=34.23 Aligned_cols=72 Identities=11% Similarity=0.153 Sum_probs=47.0
Q ss_pred EEEEeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEe-CCCeEEEEEeC
Q psy14552 118 VRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGL-ADNTVRLISLA 194 (290)
Q Consensus 118 i~as~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl-~dg~v~i~~l~ 194 (290)
++.+.++..++++..+++|.++.++..++. . ..++.....+-.+++.+... ....+|+++. ++++|.+|...
T Consensus 184 v~~spdg~~l~v~~~d~~V~v~D~~~~t~~--~-~~~i~~g~~p~~va~sp~~~--~dg~~l~v~~~~~~~v~v~D~~ 256 (543)
T 1nir_A 184 SRMSASGRYLLVIGRDARIDMIDLWAKEPT--K-VAEIKIGIEARSVESSKFKG--YEDRYTIAGAYWPPQFAIMDGE 256 (543)
T ss_dssp EEECTTSCEEEEEETTSEEEEEETTSSSCE--E-EEEEECCSEEEEEEECCSTT--CTTTEEEEEEEESSEEEEEETT
T ss_pred EEECCCCCEEEEECCCCeEEEEECcCCCCc--E-EEEEecCCCcceEEeCCCcC--CCCCEEEEEEccCCeEEEEecc
Confidence 333567788999888999999988421222 2 23455566777777764100 0146788887 59999999865
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=87.45 E-value=11 Score=34.00 Aligned_cols=108 Identities=13% Similarity=0.014 Sum_probs=65.4
Q ss_pred EEEEEEeCCeEEEEEEcCCCCCceeeeeee-e---cCcceeEEEeeeCCC--CCccccEEEEEeCCCeEEEEEeCCCCce
Q psy14552 126 QIVIALQGGRLIYFEMHPETGILDECSETI-Q---MESEVLCMALSNAPS--GEQMSRFLAVGLADNTVRLISLAPQDCL 199 (290)
Q Consensus 126 ~l~Val~~~~i~~l~l~~~~~~l~~~~~~~-~---l~~ei~~l~i~~~~~--~~~~~~~l~VGl~dg~v~i~~l~~~~~l 199 (290)
.++-|..|++|++..+.. +..... ... . -...|.++++.+... +.....+|+-|..|+++++|.+.....+
T Consensus 103 ~las~~~d~~v~lw~~~~--~~~~~~-~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~ 179 (393)
T 4gq1_A 103 FLACVCQDNTVRLIITKN--ETIITQ-HVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPI 179 (393)
T ss_dssp EEEEEETTSCEEEEEEET--TEEEEE-EEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEE
T ss_pred EEEEEeCCCcEEEEECCC--Ccccee-eeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCcee
Confidence 466677799999998775 221111 011 1 135688888875321 1123578999999999999998643222
Q ss_pred eEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEE
Q psy14552 200 KQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 200 ~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
...........++.... .+..+|..|-.||.+.-|.+
T Consensus 180 --~~~~~~~~~v~~v~~~p-----------------~~~~~l~~~~~d~~v~~wd~ 216 (393)
T 4gq1_A 180 --LAGYPLSSPGISVQFRP-----------------SNPNQLIVGERNGNIRIFDW 216 (393)
T ss_dssp --EEEEECSSCEEEEEEET-----------------TEEEEEEEEETTSEEEEEET
T ss_pred --eeecCCCCCcEEEEECC-----------------CCCceEEecCCCCEEEEEEC
Confidence 22223333444544331 23456999999999887754
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=86.67 E-value=14 Score=31.56 Aligned_cols=118 Identities=14% Similarity=0.163 Sum_probs=62.9
Q ss_pred cCceEEEEeeCCeEEEEEecCCC---ceec-C--CCceE--EEEEeCCCEEEEEEe-CCeEEEEEEcCCCCCceeeeeee
Q psy14552 85 NQRQIVIALQGGRLIYFEMHPVS---DKKE-S--DKKKI--VRCAVNQRQIVIALQ-GGRLIYFEMHPETGILDECSETI 155 (290)
Q Consensus 85 n~~qv~ial~~g~i~~~~~~~~~---~~~~-~--~~~~I--i~as~~~~~l~Val~-~~~i~~l~l~~~~~~l~~~~~~~ 155 (290)
...++.++..++++..+...... .+.. . ..... ++-+.++..+.++.. ++.|.++.+.. +.+ ....
T Consensus 195 dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~--~~~---~~~~ 269 (353)
T 3vgz_A 195 EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRN--GNI---LAKV 269 (353)
T ss_dssp TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTT--CCE---EEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCC--CcE---EEEE
Confidence 34556666566666655443211 1111 0 01112 223566777777765 47888887654 332 2233
Q ss_pred ecCcceeEEEeeeCCCCCccccEEEEEeC-CCeEEEEEeCCCCceeEeeEEecCCcceEEEEE
Q psy14552 156 QMESEVLCMALSNAPSGEQMSRFLAVGLA-DNTVRLISLAPQDCLKQKNLQGLPDLAESLVMI 217 (290)
Q Consensus 156 ~l~~ei~~l~i~~~~~~~~~~~~l~VGl~-dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~ 217 (290)
..+. ...+.+.+. ..+++++.+ ++.|.+|.+.. .+.+.....+..|.++.+.
T Consensus 270 ~~~~-~~~~~~s~d------g~~l~v~~~~~~~v~~~d~~~---~~~~~~~~~~~~~~~~~~s 322 (353)
T 3vgz_A 270 AAPE-SLAVLFNPA------RNEAYVTHRQAGKVSVIDAKS---YKVVKTFDTPTHPNSLALS 322 (353)
T ss_dssp ECSS-CCCEEEETT------TTEEEEEETTTTEEEEEETTT---TEEEEEEECCSEEEEEEEC
T ss_pred EcCC-CceEEECCC------CCEEEEEECCCCeEEEEECCC---CeEEEEEecCCCCCeEEEc
Confidence 4433 344556532 356777775 89999998753 2333334555667666544
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=85.21 E-value=5.4 Score=37.01 Aligned_cols=61 Identities=18% Similarity=0.256 Sum_probs=44.0
Q ss_pred CCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeC
Q psy14552 124 QRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLA 194 (290)
Q Consensus 124 ~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~ 194 (290)
+..++.+..|++|+++.+.. +. ...........+.++++.+. ..+|++|..||.|.+|.+.
T Consensus 162 ~~~las~s~Dg~v~iwD~~~--~~--~~~~~~~~~~~v~~v~wspd------g~~lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 162 PSMVAVCLADGSIAVLQVTE--TV--KVCATLPSTVAVTSVCWSPK------GKQLAVGKQNGTVVQYLPT 222 (434)
T ss_dssp TTEEEEEETTSCEEEEEESS--SE--EEEEEECGGGCEEEEEECTT------SSCEEEEETTSCEEEECTT
T ss_pred CCEEEEEECCCeEEEEEcCC--Cc--ceeeccCCCCceeEEEEcCC------CCEEEEEcCCCcEEEEccC
Confidence 45678788899999998875 21 11112223567899988643 4689999999999999865
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=85.02 E-value=24 Score=32.55 Aligned_cols=113 Identities=13% Similarity=0.180 Sum_probs=69.3
Q ss_pred EEEEEe----CCeEEEEEEcCCCCCceeeee---eeecC-cceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCC--C
Q psy14552 127 IVIALQ----GGRLIYFEMHPETGILDECSE---TIQME-SEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAP--Q 196 (290)
Q Consensus 127 l~Val~----~~~i~~l~l~~~~~~l~~~~~---~~~l~-~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~--~ 196 (290)
++++.. +++|.+|+++++++.|..+.. +...+ .++-=+++-..... +..|++|.-.+|.+..|.+.. .
T Consensus 88 la~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~--g~~yafV~~k~G~~~q~~l~~~~~ 165 (355)
T 3amr_A 88 IAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKT--GKYYAMVTGKEGEFEQYELKADKN 165 (355)
T ss_dssp EEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTT--CCEEEEEECSSSEEEEEEEEECTT
T ss_pred EEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCC--CcEEEEEECCCCeEEEEEEEeCCC
Confidence 455543 478999999864445544311 01111 33433333211111 246899999999999988843 2
Q ss_pred C--ceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeCCC
Q psy14552 197 D--CLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTS 259 (290)
Q Consensus 197 ~--~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~~~ 259 (290)
. .-+.+.+..++..|+.+.+-. ..-+||+|-.+--+.+|..++.+
T Consensus 166 g~~~~~lVR~f~lgsq~EgcvvDd------------------~~g~Lyv~eEd~GIw~~da~p~~ 212 (355)
T 3amr_A 166 GYISGKKVRAFKMNSQTEGMAADD------------------EYGRLYIAEEDEAIWKFSAEPDG 212 (355)
T ss_dssp SCEEEEEEEEEECSSCEEEEEEET------------------TTTEEEEEETTTEEEEEECSTTS
T ss_pred CcccceEEEEecCCCCcceEEEcC------------------CCCeEEEecccceEEEEeCCcCC
Confidence 2 234556677888998776652 33459999998778888776654
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.80 E-value=12 Score=36.85 Aligned_cols=69 Identities=13% Similarity=0.241 Sum_probs=48.1
Q ss_pred EEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeec---CcceeEEEeeeCCCCCccccEEEEEeCCCeEEEE
Q psy14552 117 IVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQM---ESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLI 191 (290)
Q Consensus 117 Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l---~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~ 191 (290)
|.+| +.++..++++..|++++++..+ +.+.. +. ... .+++.++++.|. ..+|++|..||+|.+|
T Consensus 88 V~~vawSPdG~~LAs~s~dg~V~iwd~~---~~l~~-l~-~~~~~~~~sv~svafSPD------G~~LAsgs~DGtVkIW 156 (588)
T 2j04_A 88 PRVCKPSPIDDWMAVLSNNGNVSVFKDN---KMLTN-LD-SKGNLSSRTYHCFEWNPI------ESSIVVGNEDGELQFF 156 (588)
T ss_dssp EEEEEECSSSSCEEEEETTSCEEEEETT---EEEEE-CC-CSSCSTTTCEEEEEECSS------SSCEEEEETTSEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEeCC---ceeee-cc-CCCccccccEEEEEEcCC------CCEEEEEcCCCEEEEE
Confidence 5444 5667779999899999998732 11111 11 111 235889999753 5799999999999999
Q ss_pred EeCCC
Q psy14552 192 SLAPQ 196 (290)
Q Consensus 192 ~l~~~ 196 (290)
.+...
T Consensus 157 d~~~~ 161 (588)
T 2j04_A 157 SIRKN 161 (588)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 98754
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=84.44 E-value=26 Score=32.51 Aligned_cols=120 Identities=11% Similarity=0.054 Sum_probs=68.6
Q ss_pred CEEEEEEeCCeEEEEEEcCCCCCceeeeeeee-----------cCcceeEEEeeeCCCCCccccEEEEEeC--------C
Q psy14552 125 RQIVIALQGGRLIYFEMHPETGILDECSETIQ-----------MESEVLCMALSNAPSGEQMSRFLAVGLA--------D 185 (290)
Q Consensus 125 ~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~-----------l~~ei~~l~i~~~~~~~~~~~~l~VGl~--------d 185 (290)
.+++....+++++++.+.. +.. .+.++++ -|.....+.+.+ ....++|.+. +
T Consensus 238 G~~~~vs~~g~V~v~d~~~--~~~-~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~------~~~~lyV~~~~~~~~~hk~ 308 (386)
T 3sjl_D 238 GRLVWPTYTGKIHQIDLSS--GDA-KFLPAVEALTEAERADGWRPGGWQQVAYHR------ALDRIYLLVDQRDEWRHKT 308 (386)
T ss_dssp TEEEEEBTTSEEEEEECTT--SSC-EECCCEESSCHHHHHTTEEECSSSCEEEET------TTTEEEEEEEECCTTCTTS
T ss_pred CcEEEEeCCCEEEEEECCC--Ccc-eeecceeccccccccccccCCCcceeeECC------CCCeEEEEeccccccccCC
Confidence 3444444578888887653 211 2222232 133333344432 2355666553 1
Q ss_pred --CeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEec-CceEEEEEEeCCCCcc
Q psy14552 186 --NTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQ-NGALLRMVVDQTSGDL 262 (290)
Q Consensus 186 --g~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~-dG~l~~~~~d~~~~~l 262 (290)
+.|.++.+. ..+.++...++.-|.++.+.. +++..||+.-+ +|.+. .+|..++.+
T Consensus 309 ~~~~V~viD~~---t~kv~~~i~vg~~~~~lavs~-----------------D~~~~ly~tn~~~~~Vs--ViD~~t~k~ 366 (386)
T 3sjl_D 309 ASRFVVVLDAK---TGERLAKFEMGHEIDSINVSQ-----------------DEKPLLYALSTGDKTLY--IHDAESGEE 366 (386)
T ss_dssp CEEEEEEEETT---TCCEEEEEEEEEEECEEEECS-----------------SSSCEEEEEETTTTEEE--EEETTTCCE
T ss_pred CCCEEEEEECC---CCeEEEEEECCCCcceEEECC-----------------CCCeEEEEEcCCCCeEE--EEECCCCcE
Confidence 345555554 356666666777777887764 45656888765 78775 458888775
Q ss_pred cccceEEecCcceEE
Q psy14552 263 SDNRMRYLGSRPVKL 277 (290)
Q Consensus 263 ~~~~~~~lG~~pv~l 277 (290)
. ++..++..|-.|
T Consensus 367 ~--~~i~~~~~p~~l 379 (386)
T 3sjl_D 367 L--RSVNQLGHGPQV 379 (386)
T ss_dssp E--EEECCCCSSCCE
T ss_pred E--EEecCCCCCcee
Confidence 3 566777777655
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=84.35 E-value=18 Score=30.73 Aligned_cols=67 Identities=12% Similarity=0.106 Sum_probs=39.2
Q ss_pred EEEEeCCCEEEEEEe-CCeEEEEEEcCCCCCceeeeeeeecCc-------ceeEEEeeeCCCCCccccEEEEEeCC----
Q psy14552 118 VRCAVNQRQIVIALQ-GGRLIYFEMHPETGILDECSETIQMES-------EVLCMALSNAPSGEQMSRFLAVGLAD---- 185 (290)
Q Consensus 118 i~as~~~~~l~Val~-~~~i~~l~l~~~~~~l~~~~~~~~l~~-------ei~~l~i~~~~~~~~~~~~l~VGl~d---- 185 (290)
++.+.++..++++.. ++.|.++.++. +.. ......+. .+..+.+.+. ..+++++..+
T Consensus 48 ~~~s~dg~~~~v~~~~~~~i~~~d~~t--~~~---~~~~~~~~~~~~~~~~~~~~~~spd------g~~l~~~~~~~~~~ 116 (349)
T 1jmx_B 48 AMMAPDNRTAYVLNNHYGDIYGIDLDT--CKN---TFHANLSSVPGEVGRSMYSFAISPD------GKEVYATVNPTQRL 116 (349)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTT--TEE---EEEEESCCSTTEEEECSSCEEECTT------SSEEEEEEEEEEEC
T ss_pred eEECCCCCEEEEEeCCCCcEEEEeCCC--CcE---EEEEEcccccccccccccceEECCC------CCEEEEEccccccc
Confidence 333555666666654 67888877653 322 22333322 2556666532 3577777754
Q ss_pred --------CeEEEEEeCC
Q psy14552 186 --------NTVRLISLAP 195 (290)
Q Consensus 186 --------g~v~i~~l~~ 195 (290)
+.+.+|.+..
T Consensus 117 ~~~~~~~~~~i~~~d~~~ 134 (349)
T 1jmx_B 117 NDHYVVKPPRLEVFSTAD 134 (349)
T ss_dssp SSCEEECCCEEEEEEGGG
T ss_pred ccccccCCCeEEEEECCC
Confidence 8899998763
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=84.17 E-value=30 Score=33.04 Aligned_cols=153 Identities=12% Similarity=0.103 Sum_probs=80.2
Q ss_pred EEEeecCceEEEEeeCCeEEEEEec-CCCceec--CCCceE--EEEEe----CCCEEEEEE-eCCeEEEEEEcCCCCCce
Q psy14552 80 VRCAVNQRQIVIALQGGRLIYFEMH-PVSDKKE--SDKKKI--VRCAV----NQRQIVIAL-QGGRLIYFEMHPETGILD 149 (290)
Q Consensus 80 v~as~n~~qv~ial~~g~i~~~~~~-~~~~~~~--~~~~~I--i~as~----~~~~l~Val-~~~~i~~l~l~~~~~~l~ 149 (290)
+..+-..+++.++-.++.|..+.++ ...+... +.+... ++-+. ++..++++. ++++|.++.... ++
T Consensus 184 v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t--~~-- 259 (543)
T 1nir_A 184 SRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET--LE-- 259 (543)
T ss_dssp EEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT--CC--
T ss_pred EEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc--cc--
Confidence 3344445667777667777766652 1111111 112222 33355 677788886 589998886543 22
Q ss_pred eeeeeeecC-----------c-ceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEE
Q psy14552 150 ECSETIQME-----------S-EVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMI 217 (290)
Q Consensus 150 ~~~~~~~l~-----------~-ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~ 217 (290)
. ++.++.+ . .+..+.+.+. +..+++....+|.|.++.+.....+.. .....+..|+++.+.
T Consensus 260 ~-~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~-----~~~~~vs~~~~g~i~vvd~~~~~~l~~-~~i~~~~~~~~~~~s 332 (543)
T 1nir_A 260 P-KQIVSTRGMTVDTQTYHPEPRVAAIIASHE-----HPEFIVNVKETGKVLLVNYKDIDNLTV-TSIGAAPFLHDGGWD 332 (543)
T ss_dssp E-EEEEECCEECSSSCCEESCCCEEEEEECSS-----SSEEEEEETTTTEEEEEECTTSSSCEE-EEEECCSSCCCEEEC
T ss_pred c-ceeecccCcccCccccccCCceEEEEECCC-----CCEEEEEECCCCeEEEEEecCCCccee-EEeccCcCccCceEC
Confidence 2 2333321 1 3555555432 134444445699999998864433432 122345567776544
Q ss_pred EecCCCCCCCCCCCCCccCCceEEEEE-ecCceEEEEEEeCCCCccc
Q psy14552 218 EMGASDPTSSDEPAGPVTLGNLYLYVG-LQNGALLRMVVDQTSGDLS 263 (290)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~L~iG-l~dG~l~~~~~d~~~~~l~ 263 (290)
. .+. ||+++ ..++.+.- +|..++++.
T Consensus 333 p-----------------dg~-~l~va~~~~~~v~v--~D~~tg~l~ 359 (543)
T 1nir_A 333 S-----------------SHR-YFMTAANNSNKVAV--IDSKDRRLS 359 (543)
T ss_dssp T-----------------TSC-EEEEEEGGGTEEEE--EETTTTEEE
T ss_pred C-----------------CCC-EEEEEecCCCeEEE--EECCCCeEE
Confidence 2 233 45554 45666554 577777653
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=83.63 E-value=23 Score=31.40 Aligned_cols=127 Identities=12% Similarity=0.096 Sum_probs=66.7
Q ss_pred ceEEEEeec--CceEEEEe-eCCeEEEEEecCCCc-eecCCCceEEEE--EeCCCEEEEEEe--------CCeEEEEEEc
Q psy14552 77 KKIVRCAVN--QRQIVIAL-QGGRLIYFEMHPVSD-KKESDKKKIVRC--AVNQRQIVIALQ--------GGRLIYFEMH 142 (290)
Q Consensus 77 ~~Iv~as~n--~~qv~ial-~~g~i~~~~~~~~~~-~~~~~~~~Ii~a--s~~~~~l~Val~--------~~~i~~l~l~ 142 (290)
..+...+.+ ..+++++. .+|.|..+.+..... +..+.+..+... +.++..++++.. |+.|+++.+.
T Consensus 212 ~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~ 291 (433)
T 3bws_A 212 KWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMD 291 (433)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETT
T ss_pred CCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECC
Confidence 334444443 45565555 467777666542211 111222333222 445667777763 6688888776
Q ss_pred CCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEE-EEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEE
Q psy14552 143 PETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLA-VGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMI 217 (290)
Q Consensus 143 ~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~-VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~ 217 (290)
. +.+ ......+..+..+++.+. ..+++ .+..|+.+.+|.++... .......+..|.++.+.
T Consensus 292 ~--~~~---~~~~~~~~~~~~~~~~~~------g~~l~~~~~~~~~v~v~d~~~~~---~~~~~~~~~~~~~~~~s 353 (433)
T 3bws_A 292 K--EKL---IDTIGPPGNKRHIVSGNT------ENKIYVSDMCCSKIEVYDLKEKK---VQKSIPVFDKPNTIALS 353 (433)
T ss_dssp T--TEE---EEEEEEEECEEEEEECSS------TTEEEEEETTTTEEEEEETTTTE---EEEEEECSSSEEEEEEC
T ss_pred C--CcE---EeeccCCCCcceEEECCC------CCEEEEEecCCCEEEEEECCCCc---EEEEecCCCCCCeEEEc
Confidence 4 322 222334556777777542 23454 44679999999986322 22222334455555443
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.13 E-value=31 Score=32.94 Aligned_cols=110 Identities=9% Similarity=0.076 Sum_probs=64.3
Q ss_pred ceEEEEeec-CceEEEEeeCCeEEEEEecCCCc--eecC-CCceEEEE--E--eCC-CEEEEEEeCCeEEEEEEcCCCCC
Q psy14552 77 KKIVRCAVN-QRQIVIALQGGRLIYFEMHPVSD--KKES-DKKKIVRC--A--VNQ-RQIVIALQGGRLIYFEMHPETGI 147 (290)
Q Consensus 77 ~~Iv~as~n-~~qv~ial~~g~i~~~~~~~~~~--~~~~-~~~~Ii~a--s--~~~-~~l~Val~~~~i~~l~l~~~~~~ 147 (290)
..|.+++.+ +.+++.+..+|.|..+.+..... .... ....|.+. + .++ ..++-|..|++|++..+.. +.
T Consensus 267 ~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~--~~ 344 (524)
T 2j04_B 267 SLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKD--IA 344 (524)
T ss_dssp TCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGG--HH
T ss_pred CCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCC--CC
Confidence 456677654 56788888889998887753211 1111 11224222 2 233 4467677799999998764 21
Q ss_pred ceeeeeeeecC-cceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCC
Q psy14552 148 LDECSETIQME-SEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAP 195 (290)
Q Consensus 148 l~~~~~~~~l~-~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~ 195 (290)
....... ..+ ..+.++++.+. ...++.|..|+++.+|.+..
T Consensus 345 ~~~~~~~-~~~~~~v~~v~fsp~------~~~l~s~~~d~tv~lwd~~~ 386 (524)
T 2j04_B 345 TTKTTVS-RFRGSNLVPVVYCPQ------IYSYIYSDGASSLRAVPSRA 386 (524)
T ss_dssp HHCEEEE-ECSCCSCCCEEEETT------TTEEEEECSSSEEEEEETTC
T ss_pred ccccccc-ccccCcccceEeCCC------cCeEEEeCCCCcEEEEECcc
Confidence 1111111 122 24667788653 34577888899999998754
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=82.96 E-value=18 Score=30.77 Aligned_cols=57 Identities=11% Similarity=0.015 Sum_probs=34.4
Q ss_pred EEEEEeCCeEEEEEEcCCCCCceeeeeeeecCc--ceeEEEeeeCCCCCccccEEEEEe-CCCeEEEEEeC
Q psy14552 127 IVIALQGGRLIYFEMHPETGILDECSETIQMES--EVLCMALSNAPSGEQMSRFLAVGL-ADNTVRLISLA 194 (290)
Q Consensus 127 l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~--ei~~l~i~~~~~~~~~~~~l~VGl-~dg~v~i~~l~ 194 (290)
++.+..++.|.++.+.. +. .......+. .+..+.+.+. ..+++++. .++.|.+|.++
T Consensus 14 ~v~~~~~~~v~~~d~~~--~~---~~~~~~~~~~~~~~~~~~s~d------g~~~~v~~~~~~~i~~~d~~ 73 (349)
T 1jmx_B 14 MIVTNYPNNLHVVDVAS--DT---VYKSCVMPDKFGPGTAMMAPD------NRTAYVLNNHYGDIYGIDLD 73 (349)
T ss_dssp EEEEETTTEEEEEETTT--TE---EEEEEECSSCCSSCEEEECTT------SSEEEEEETTTTEEEEEETT
T ss_pred EEEeCCCCeEEEEECCC--Cc---EEEEEecCCCCCCceeEECCC------CCEEEEEeCCCCcEEEEeCC
Confidence 44444577888877653 32 223445555 5666666532 34566555 58999998875
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=80.42 E-value=25 Score=29.58 Aligned_cols=71 Identities=15% Similarity=0.042 Sum_probs=41.0
Q ss_pred cEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEe
Q psy14552 177 RFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 177 ~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d 256 (290)
.+++++ ++.|.+|.++. .+.+.....+..|.++.+.. ++. +|+++-.+|.+..+ |
T Consensus 253 ~~l~~~--~~~v~~~d~~~---~~~~~~~~~~~~~~~~~~s~-----------------dg~-~l~~~~~~~~i~v~--d 307 (337)
T 1pby_B 253 TRAFGA--YNVLESFDLEK---NASIKRVPLPHSYYSVNVST-----------------DGS-TVWLGGALGDLAAY--D 307 (337)
T ss_dssp SEEEEE--ESEEEEEETTT---TEEEEEEECSSCCCEEEECT-----------------TSC-EEEEESBSSEEEEE--E
T ss_pred CEEEEe--CCeEEEEECCC---CcCcceecCCCceeeEEECC-----------------CCC-EEEEEcCCCcEEEE--E
Confidence 456666 68888888653 23333334555666665432 233 58888888988776 4
Q ss_pred CCCCcccccceEEecCcc
Q psy14552 257 QTSGDLSDNRMRYLGSRP 274 (290)
Q Consensus 257 ~~~~~l~~~~~~~lG~~p 274 (290)
..++++. +...+|..|
T Consensus 308 ~~~~~~~--~~~~~~~~~ 323 (337)
T 1pby_B 308 AETLEKK--GQVDLPGNA 323 (337)
T ss_dssp TTTCCEE--EEEECGGGC
T ss_pred CcCCcEE--EEEEcCCCC
Confidence 5555442 234455433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 290 | ||||
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.001 |
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 37.5 bits (85), Expect = 0.001
Identities = 20/165 (12%), Positives = 41/165 (24%), Gaps = 21/165 (12%)
Query: 50 QVYPDGIRHIGA---KNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPV 106
PD + D A + + L+ G + E+
Sbjct: 180 YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI- 238
Query: 107 SDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMAL 166
AVN + L F++ E + + + + +
Sbjct: 239 ------MDVFYFSTAVNPAKTRAFGAYNVLESFDL--EKN---ASIKRVPLPHSYYSVNV 287
Query: 167 SNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLA 211
S G + +G A + + Q +L G ++
Sbjct: 288 S--TDG----STVWLGGALGDLAAYDAETLEKKGQVDLPGNASMS 326
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 290 | |||
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 97.88 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 97.65 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 97.46 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 97.44 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 97.35 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 97.17 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 96.95 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 96.68 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 96.66 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 96.55 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 96.34 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 96.24 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 96.21 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 96.09 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 95.96 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 95.92 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 95.7 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 95.22 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 95.01 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 94.7 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 94.44 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 94.16 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 94.03 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 93.3 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 92.63 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 92.04 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 89.43 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 86.7 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 85.75 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 85.31 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 84.98 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 82.39 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 81.7 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 81.63 |
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.88 E-value=0.00095 Score=55.38 Aligned_cols=157 Identities=13% Similarity=0.185 Sum_probs=91.3
Q ss_pred CceEEEEeecCceEEEEeeCCeEEEEEecCCCceec-CCCceEEEE-EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeee
Q psy14552 76 KKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKE-SDKKKIVRC-AVNQRQIVIALQGGRLIYFEMHPETGILDECSE 153 (290)
Q Consensus 76 ~~~Iv~as~n~~qv~ial~~g~i~~~~~~~~~~~~~-~~~~~Ii~a-s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~ 153 (290)
...+...+.+..+++.+..+|.|..+.+........ ..+...+.| +.++..++.+..|+.|+++.+.. ........
T Consensus 177 ~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~--~~~~~~~~ 254 (342)
T d2ovrb2 177 TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKT--GQCLQTLQ 254 (342)
T ss_dssp SSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTT--CCEEEEEC
T ss_pred ccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCCCEEEEEcCCCEEEEEeccc--cccccccc
Confidence 455677777888999999999998877654332222 222223444 66677888888899999998765 22111111
Q ss_pred e-eecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCC
Q psy14552 154 T-IQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAG 232 (290)
Q Consensus 154 ~-~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~ 232 (290)
. ..-...+.++++. ..+++.|..||.|.+|.+...+.+........+.-...+.-+.+.
T Consensus 255 ~~~~~~~~~~~~~~~--------~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s------------ 314 (342)
T d2ovrb2 255 GPNKHQSAVTCLQFN--------KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRAS------------ 314 (342)
T ss_dssp STTSCSSCEEEEEEC--------SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEEC------------
T ss_pred ccceeeeceeecccC--------CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEEC------------
Confidence 0 0112334444432 468899999999999998654444333211111111123233331
Q ss_pred CccCCceEEEEEecCce----EEEEEEeC
Q psy14552 233 PVTLGNLYLYVGLQNGA----LLRMVVDQ 257 (290)
Q Consensus 233 ~~~~~~~~L~iGl~dG~----l~~~~~d~ 257 (290)
....+|.+|-.||. +..+.+|.
T Consensus 315 ---~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 315 ---NTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp ---SSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred ---CCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 23567899999995 55555543
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.65 E-value=0.013 Score=49.78 Aligned_cols=147 Identities=8% Similarity=0.045 Sum_probs=89.4
Q ss_pred ceEEEEee--cCceEEEEeeCCeEEEEEecCCCceec-CCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceee
Q psy14552 77 KKIVRCAV--NQRQIVIALQGGRLIYFEMHPVSDKKE-SDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDEC 151 (290)
Q Consensus 77 ~~Iv~as~--n~~qv~ial~~g~i~~~~~~~~~~~~~-~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~ 151 (290)
..|.+.+. +..+++.+..+|.+..+.+.....+.. .....+.+. +.++..+++|..++.++++.+.. +..
T Consensus 184 ~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~--~~~--- 258 (337)
T d1gxra_ 184 DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK--PDK--- 258 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTS--SCE---
T ss_pred cccccccccccccccccccccccccccccccceeecccccccceEEEEEcccccccceeccccccccccccc--ccc---
Confidence 34555444 466788888889888776653322211 111223332 45667788888899999998765 221
Q ss_pred eeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCC
Q psy14552 152 SETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPA 231 (290)
Q Consensus 152 ~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~ 231 (290)
.....-...|.++++.+. ..+++.|.+||.|.+|+++....+... .-.....++.+.
T Consensus 259 ~~~~~~~~~i~~v~~s~~------g~~l~s~s~Dg~i~iwd~~~~~~~~~~---~~~~~v~~~~~s-------------- 315 (337)
T d1gxra_ 259 YQLHLHESCVLSLKFAYC------GKWFVSTGKDNLLNAWRTPYGASIFQS---KESSSVLSCDIS-------------- 315 (337)
T ss_dssp EEECCCSSCEEEEEECTT------SSEEEEEETTSEEEEEETTTCCEEEEE---ECSSCEEEEEEC--------------
T ss_pred ccccccccccceEEECCC------CCEEEEEeCCCeEEEEECCCCCEEEEc---cCCCCEEEEEEe--------------
Confidence 112234567888888642 468899999999999998644333222 122223343322
Q ss_pred CCccCCceEEEEEecCceEEEEEE
Q psy14552 232 GPVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 232 ~~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
....+|..|-.||.+.-|++
T Consensus 316 ----~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 316 ----VDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ----TTSCEEEEEETTSCEEEEEE
T ss_pred ----CCCCEEEEEeCCCeEEEEEE
Confidence 12346899999999887765
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.46 E-value=0.0073 Score=52.40 Aligned_cols=153 Identities=10% Similarity=0.110 Sum_probs=90.3
Q ss_pred eEEEEeec--CceEEEEeeCCeEEEEEecCCCceec----CCC-ceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCc
Q psy14552 78 KIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKE----SDK-KKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGIL 148 (290)
Q Consensus 78 ~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~----~~~-~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l 148 (290)
+|.+++.+ ..+++.+..+|.|..+.... +++.. ..+ ..|.+. +.++..++.+..|++|++..++. +..
T Consensus 9 pIt~~~~s~dg~~la~~~~~~~i~iw~~~~-~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~--~~~ 85 (371)
T d1k8kc_ 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSG-NKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG--RTW 85 (371)
T ss_dssp CCCEEEECTTSSEEEEECSSSEEEEEEEET-TEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET--TEE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEECCC-CCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecc--ccc
Confidence 46666665 45677777788887776642 23222 111 224222 45677788887899999998875 222
Q ss_pred eeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCC
Q psy14552 149 DECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSD 228 (290)
Q Consensus 149 ~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~ 228 (290)
............|.++++.+. ..++++|..|+.+.+|.++......... .........+.-+.+.
T Consensus 86 ~~~~~~~~~~~~v~~i~~~p~------~~~l~~~s~d~~i~i~~~~~~~~~~~~~-~~~~~~~~~v~~v~~~-------- 150 (371)
T d1k8kc_ 86 KPTLVILRINRAARCVRWAPN------EKKFAVGSGSRVISICYFEQENDWWVCK-HIKKPIRSTVLSLDWH-------- 150 (371)
T ss_dssp EEEEECCCCSSCEEEEEECTT------SSEEEEEETTSSEEEEEEETTTTEEEEE-EECTTCCSCEEEEEEC--------
T ss_pred ccccccccccccccccccccc------cccceeecccCcceeeeeeccccccccc-cccccccccccccccc--------
Confidence 222111123567999998643 4689999999999999987654433322 1122111222223331
Q ss_pred CCCCCccCCceEEEEEecCceEEEEEE
Q psy14552 229 EPAGPVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 229 ~~~~~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
....+|..|-.||.+.-|.+
T Consensus 151 -------p~~~~l~s~s~D~~v~v~~~ 170 (371)
T d1k8kc_ 151 -------PNSVLLAAGSCDFKCRIFSA 170 (371)
T ss_dssp -------TTSSEEEEEETTSCEEEEEC
T ss_pred -------ccccceeccccCcEEEEEee
Confidence 12235788888998876654
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.44 E-value=0.018 Score=47.40 Aligned_cols=111 Identities=17% Similarity=0.220 Sum_probs=68.1
Q ss_pred eEEEEeecCceEEEEeeCCeEEEEEecCCC--ceec-CCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeee
Q psy14552 78 KIVRCAVNQRQIVIALQGGRLIYFEMHPVS--DKKE-SDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECS 152 (290)
Q Consensus 78 ~Iv~as~n~~qv~ial~~g~i~~~~~~~~~--~~~~-~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~ 152 (290)
..++.+-+..+++++..+|.+..+.+.... .... .....|.+. +.++..++.+..++.|+++.+... ..+...
T Consensus 140 ~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~-~~~~~~- 217 (299)
T d1nr0a2 140 SCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANN-FELAHT- 217 (299)
T ss_dssp EEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGT-TEESCC-
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc-
Confidence 333444456677888888988887765321 1111 112234333 345566888888999999987652 111111
Q ss_pred eeee-cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCC
Q psy14552 153 ETIQ-MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQ 196 (290)
Q Consensus 153 ~~~~-l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~ 196 (290)
.... -...|.++++.+. ..+++.|..||.+.+|.+...
T Consensus 218 ~~~~~h~~~v~~l~~s~~------~~~l~sgs~dg~i~iwd~~~~ 256 (299)
T d1nr0a2 218 NSWTFHTAKVACVSWSPD------NVRLATGSLDNSVIVWNMNKP 256 (299)
T ss_dssp CCCCCCSSCEEEEEECTT------SSEEEEEETTSCEEEEETTCT
T ss_pred cccccccccccccccccc------ccceEEEcCCCEEEEEECCCC
Confidence 1111 2457888888642 578999999999999998643
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.35 E-value=0.0077 Score=49.78 Aligned_cols=146 Identities=14% Similarity=0.165 Sum_probs=82.2
Q ss_pred CceEEEEeeCCeEEEEEecCCCceecCCCceEEEEEeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcceeEEE
Q psy14552 86 QRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMA 165 (290)
Q Consensus 86 ~~qv~ial~~g~i~~~~~~~~~~~~~~~~~~Ii~as~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~ 165 (290)
+..++++..++.+..+......+.........++.+.++..++++..++.|+++.+.. +.+.+. ....-+..|.+++
T Consensus 110 ~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~--~~~~~~-~~~~~~~~i~~~~ 186 (299)
T d1nr0a2 110 DGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSG--ASVSEV-KTIVHPAEITSVA 186 (299)
T ss_dssp TSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEET--TEEEEE-EEEECSSCEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccc-ccccccccccccc
Confidence 4555556666666554322111111111111223345667789998999999998875 333222 2233467889988
Q ss_pred eeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEe
Q psy14552 166 LSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGL 245 (290)
Q Consensus 166 i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl 245 (290)
+.+. ..++++|..||.+.+|.+.....+... ..+..-...+.-+.+. ....+|..|-
T Consensus 187 ~~~~------~~~l~~~~~d~~i~~~~~~~~~~~~~~--~~~~~h~~~v~~l~~s---------------~~~~~l~sgs 243 (299)
T d1nr0a2 187 FSNN------GAFLVATDQSRKVIPYSVANNFELAHT--NSWTFHTAKVACVSWS---------------PDNVRLATGS 243 (299)
T ss_dssp ECTT------SSEEEEEETTSCEEEEEGGGTTEESCC--CCCCCCSSCEEEEEEC---------------TTSSEEEEEE
T ss_pred cccc------ccccccccccccccccccccccccccc--cccccccccccccccc---------------ccccceEEEc
Confidence 8642 478999999999999998643222211 1121111112222221 2234688999
Q ss_pred cCceEEEEEEeC
Q psy14552 246 QNGALLRMVVDQ 257 (290)
Q Consensus 246 ~dG~l~~~~~d~ 257 (290)
.||.+.-|.+..
T Consensus 244 ~dg~i~iwd~~~ 255 (299)
T d1nr0a2 244 LDNSVIVWNMNK 255 (299)
T ss_dssp TTSCEEEEETTC
T ss_pred CCCEEEEEECCC
Confidence 999988776543
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.17 E-value=0.053 Score=45.76 Aligned_cols=142 Identities=10% Similarity=0.153 Sum_probs=84.4
Q ss_pred CceEEEEeeCCeEEEEEecCCCceec-C-CCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcce
Q psy14552 86 QRQIVIALQGGRLIYFEMHPVSDKKE-S-DKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEV 161 (290)
Q Consensus 86 ~~qv~ial~~g~i~~~~~~~~~~~~~-~-~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei 161 (290)
..+++.+..++.+.++.+.....+.. . ....+.+. +.++..++++..++.++++.+.. + +.+.....+..|
T Consensus 153 ~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~--~---~~~~~~~~~~~i 227 (337)
T d1gxra_ 153 SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE--G---RQLQQHDFTSQI 227 (337)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--T---EEEEEEECSSCE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--c---eeecccccccce
Confidence 45566566667777776543221211 1 11223222 45566788888899999988765 2 223455678889
Q ss_pred eEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEE
Q psy14552 162 LCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYL 241 (290)
Q Consensus 162 ~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L 241 (290)
.++++.+. ..++++|..||.+.+|.++....... ..-.....++... ....+|
T Consensus 228 ~~l~~~~~------~~~l~~~~~d~~i~i~d~~~~~~~~~---~~~~~~i~~v~~s------------------~~g~~l 280 (337)
T d1gxra_ 228 FSLGYCPT------GEWLAVGMESSNVEVLHVNKPDKYQL---HLHESCVLSLKFA------------------YCGKWF 280 (337)
T ss_dssp EEEEECTT------SSEEEEEETTSCEEEEETTSSCEEEE---CCCSSCEEEEEEC------------------TTSSEE
T ss_pred EEEEEccc------ccccceeccccccccccccccccccc---cccccccceEEEC------------------CCCCEE
Confidence 88888642 57899999999999999864332111 1111222333222 122358
Q ss_pred EEEecCceEEEEEEeCCCCc
Q psy14552 242 YVGLQNGALLRMVVDQTSGD 261 (290)
Q Consensus 242 ~iGl~dG~l~~~~~d~~~~~ 261 (290)
+.|-.||.+.-|. ..++.
T Consensus 281 ~s~s~Dg~i~iwd--~~~~~ 298 (337)
T d1gxra_ 281 VSTGKDNLLNAWR--TPYGA 298 (337)
T ss_dssp EEEETTSEEEEEE--TTTCC
T ss_pred EEEeCCCeEEEEE--CCCCC
Confidence 8899999887664 44443
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.95 E-value=0.072 Score=43.57 Aligned_cols=104 Identities=11% Similarity=0.128 Sum_probs=62.9
Q ss_pred cCceEEEEeeCCeEEEEEecCCCceec-CC-CceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcc
Q psy14552 85 NQRQIVIALQGGRLIYFEMHPVSDKKE-SD-KKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESE 160 (290)
Q Consensus 85 n~~qv~ial~~g~i~~~~~~~~~~~~~-~~-~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~e 160 (290)
...+++.+..+|.+..+.+........ .. ...|.+. +.++..++.|..|+.|+++.+... ..+ ...........
T Consensus 195 ~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~-~~~-~~~~~~~~~~~ 272 (340)
T d1tbga_ 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD-QEL-MTYSHDNIICG 272 (340)
T ss_dssp TSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEE-EEECCTTCCSC
T ss_pred ccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccc-ccc-cccccccccCc
Confidence 355666667778877665543211111 11 1223222 455667888888999999887652 111 11111124556
Q ss_pred eeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCC
Q psy14552 161 VLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQ 196 (290)
Q Consensus 161 i~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~ 196 (290)
+.++++.+. ..+|++|..||.|.+|.+...
T Consensus 273 i~~~~~s~~------~~~l~~g~~dg~i~iwd~~~~ 302 (340)
T d1tbga_ 273 ITSVSFSKS------GRLLLAGYDDFNCNVWDALKA 302 (340)
T ss_dssp EEEEEECSS------SCEEEEEETTSCEEEEETTTC
T ss_pred eEEEEECCC------CCEEEEEECCCEEEEEECCCC
Confidence 788887642 579999999999999998643
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.68 E-value=0.032 Score=48.11 Aligned_cols=112 Identities=11% Similarity=0.082 Sum_probs=70.7
Q ss_pred EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeee-cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCce
Q psy14552 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQ-MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCL 199 (290)
Q Consensus 121 s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~-l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l 199 (290)
+.++..+++|..|+.|++..+.. +.+... ..+. -...|.++++.+. ..+|+.|..|+.+.+|.++... .
T Consensus 16 s~dg~~la~~~~~~~i~iw~~~~--~~~~~~-~~l~gH~~~V~~l~fsp~------~~~l~s~s~D~~i~vWd~~~~~-~ 85 (371)
T d1k8kc_ 16 NKDRTQIAICPNNHEVHIYEKSG--NKWVQV-HELKEHNGQVTGVDWAPD------SNRIVTCGTDRNAYVWTLKGRT-W 85 (371)
T ss_dssp CTTSSEEEEECSSSEEEEEEEET--TEEEEE-EEEECCSSCEEEEEEETT------TTEEEEEETTSCEEEEEEETTE-E
T ss_pred CCCCCEEEEEeCCCEEEEEECCC--CCEEEE-EEecCCCCCEEEEEECCC------CCEEEEEECCCeEEEEeecccc-c
Confidence 45667788888889999998864 333222 1222 2467999998753 4689999999999999986432 1
Q ss_pred eEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeCCC
Q psy14552 200 KQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTS 259 (290)
Q Consensus 200 ~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~~~ 259 (290)
.. ...+...-..+.-+.+. ....+|++|..||.+.-+.++...
T Consensus 86 ~~--~~~~~~~~~~v~~i~~~---------------p~~~~l~~~s~d~~i~i~~~~~~~ 128 (371)
T d1k8kc_ 86 KP--TLVILRINRAARCVRWA---------------PNEKKFAVGSGSRVISICYFEQEN 128 (371)
T ss_dssp EE--EEECCCCSSCEEEEEEC---------------TTSSEEEEEETTSSEEEEEEETTT
T ss_pred cc--ccccccccccccccccc---------------cccccceeecccCcceeeeeeccc
Confidence 21 12222222233333332 123469999999998888776644
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.66 E-value=0.12 Score=41.90 Aligned_cols=112 Identities=13% Similarity=0.200 Sum_probs=72.0
Q ss_pred CceEEEEeecCceEEEEeeCCeEEEEEecCCCceec---C-CCceEEEE-EeCCCEEEEEEeCCeEEEEEEcCCCCCcee
Q psy14552 76 KKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKE---S-DKKKIVRC-AVNQRQIVIALQGGRLIYFEMHPETGILDE 150 (290)
Q Consensus 76 ~~~Iv~as~n~~qv~ial~~g~i~~~~~~~~~~~~~---~-~~~~Ii~a-s~~~~~l~Val~~~~i~~l~l~~~~~~l~~ 150 (290)
...+.+.+.++.+++.+..+|.|..+.+........ . .+..-+.| +.++..++.|..|++|++..+.. +++..
T Consensus 217 ~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~t--g~~i~ 294 (342)
T d2ovrb2 217 QSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKT--GEFIR 294 (342)
T ss_dssp CSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTT--CCEEE
T ss_pred ccceeEEecCCCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCC--CCEEE
Confidence 445677788889999988999998887654322211 1 11112334 66777888888899999998865 43221
Q ss_pred eeeeee---cCcceeEEEeeeCCCCCccccEEEEEeCCCe----EEEEEeCC
Q psy14552 151 CSETIQ---MESEVLCMALSNAPSGEQMSRFLAVGLADNT----VRLISLAP 195 (290)
Q Consensus 151 ~~~~~~---l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~----v~i~~l~~ 195 (290)
.+.... -...|.++++.+. ..++++|..||+ +.+|.++.
T Consensus 295 ~~~~~~~~~~~~~v~~v~~s~~------~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 295 NLVTLESGGSGGVVWRIRASNT------KLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp EEEECTTGGGTCEEEEEEECSS------EEEEEEECSSSSSCCEEEEEECCC
T ss_pred EEecccCCCCCCCEEEEEECCC------CCEEEEEeCCCCCeeEEEEEeCCC
Confidence 111111 1235788888632 578999988885 78888764
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.55 E-value=0.14 Score=41.62 Aligned_cols=105 Identities=10% Similarity=0.124 Sum_probs=66.8
Q ss_pred ceEEEEee--cCceEEEEeeCCeEEEEEecCCCceec----CCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCc
Q psy14552 77 KKIVRCAV--NQRQIVIALQGGRLIYFEMHPVSDKKE----SDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGIL 148 (290)
Q Consensus 77 ~~Iv~as~--n~~qv~ial~~g~i~~~~~~~~~~~~~----~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l 148 (290)
..|.+++. +..+++.+..+|.+..+.+........ .....+.++ +.++..++.|..|+.|+++.+.. +..
T Consensus 227 ~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~--~~~ 304 (340)
T d1tbga_ 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK--ADR 304 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTT--CCE
T ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCC--CcE
Confidence 34555554 356777777888888776653322211 112224333 45566788888899999998765 322
Q ss_pred eeeeeeee-cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEE
Q psy14552 149 DECSETIQ-MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLIS 192 (290)
Q Consensus 149 ~~~~~~~~-l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~ 192 (290)
...+. -...|.++++.+. ..+|+.|..||.|++|+
T Consensus 305 ---~~~~~~H~~~V~~l~~s~d------~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 305 ---AGVLAGHDNRVSCLGVTDD------GMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ---EEEECCCSSCEEEEEECTT------SSCEEEEETTSCEEEEC
T ss_pred ---EEEEcCCCCCEEEEEEeCC------CCEEEEEccCCEEEEeC
Confidence 22222 2567899988642 46889999999999884
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=96.34 E-value=0.062 Score=44.28 Aligned_cols=83 Identities=22% Similarity=0.337 Sum_probs=59.4
Q ss_pred EEEEE-eCCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeC-CCeEEEEEeCCCC-ceeEee
Q psy14552 127 IVIAL-QGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLA-DNTVRLISLAPQD-CLKQKN 203 (290)
Q Consensus 127 l~Val-~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~-dg~v~i~~l~~~~-~l~~~~ 203 (290)
+.|+. .+++|+++.++. .+.+.. ++....+.++..+++.+. ..+|+++.. |+.+.+|.+++.. .++...
T Consensus 6 v~v~~~~~~~I~v~~~~~-~~~l~~-~~~~~~~~~v~~la~spD------G~~L~v~~~~d~~i~~~~i~~~~~~~~~~~ 77 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNH-EGALTL-TQVVDVPGQVQPMVVSPD------KRYLYVGVRPEFRVLAYRIAPDDGALTFAA 77 (333)
T ss_dssp EEEEEGGGTEEEEEEECT-TSCEEE-EEEEECSSCCCCEEECTT------SSEEEEEETTTTEEEEEEECTTTCCEEEEE
T ss_pred EEEECCCCCcEEEEEEcC-CCCeEE-EEEEcCCCCEeEEEEeCC------CCEEEEEECCCCeEEEEEEeCCCCcEEEee
Confidence 55666 488999999986 355544 345677888999998753 467877775 8999999998653 455655
Q ss_pred EEecCCcceEEEEE
Q psy14552 204 LQGLPDLAESLVMI 217 (290)
Q Consensus 204 ~~~L~~~p~Sl~~~ 217 (290)
....+.-|..+.+.
T Consensus 78 ~~~~~~~p~~l~~s 91 (333)
T d1ri6a_ 78 ESALPGSLTHISTD 91 (333)
T ss_dssp EEECSSCCSEEEEC
T ss_pred ecccCCCceEEEEc
Confidence 56667778776554
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.24 E-value=0.26 Score=41.27 Aligned_cols=149 Identities=9% Similarity=0.018 Sum_probs=80.1
Q ss_pred CceEEEEeeCCeEEEEEecCCCceec---C------CCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCcee----
Q psy14552 86 QRQIVIALQGGRLIYFEMHPVSDKKE---S------DKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDE---- 150 (290)
Q Consensus 86 ~~qv~ial~~g~i~~~~~~~~~~~~~---~------~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~---- 150 (290)
..+++.+..+|.|..+.......... + ....|.+. +.++..++.+..|+.|+++.+... .....
T Consensus 217 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~ 295 (388)
T d1erja_ 217 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA-NNKSDSKTP 295 (388)
T ss_dssp CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------------
T ss_pred CCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCC-ccccccccc
Confidence 45666667778877666543221111 0 01123333 345667888888999999887641 10000
Q ss_pred -----eeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCC
Q psy14552 151 -----CSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPT 225 (290)
Q Consensus 151 -----~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~ 225 (290)
......-...|.++++.+ ...+|++|..||.|++|.+.....+..++ .-.....++....-..
T Consensus 296 ~~~~~~~~~~~~~~~v~~~~~s~------~~~~l~sg~~dg~i~vwd~~~~~~~~~l~--~H~~~V~~~~~~~~~~---- 363 (388)
T d1erja_ 296 NSGTCEVTYIGHKDFVLSVATTQ------NDEYILSGSKDRGVLFWDKKSGNPLLMLQ--GHRNSVISVAVANGSS---- 363 (388)
T ss_dssp ---CEEEEEECCSSCEEEEEECG------GGCEEEEEETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEECSSCT----
T ss_pred cccceeeecccccceEEEEEECC------CCCEEEEEeCCCEEEEEECCCCcEEEEEe--CCCCCEEEEEEecCcc----
Confidence 000011245677777754 25799999999999999986433333221 1112233443332100
Q ss_pred CCCCCCCCccCCceEEEEEecCceEEEEEE
Q psy14552 226 SSDEPAGPVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 226 ~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
+ .....+|..|-.||.+.-+++
T Consensus 364 --~------spd~~~l~s~s~Dg~I~iW~~ 385 (388)
T d1erja_ 364 --L------GPEYNVFATGSGDCKARIWKY 385 (388)
T ss_dssp --T------CTTCEEEEEEETTSEEEEEEE
T ss_pred --c------CCCCCEEEEEeCCCEEEEEee
Confidence 0 113456888999999877765
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.21 E-value=0.27 Score=41.14 Aligned_cols=150 Identities=14% Similarity=0.111 Sum_probs=83.2
Q ss_pred ceEEEEeec--CceEEE-EeeCCeEEEEEecCCCceec-CC-CceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCce
Q psy14552 77 KKIVRCAVN--QRQIVI-ALQGGRLIYFEMHPVSDKKE-SD-KKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILD 149 (290)
Q Consensus 77 ~~Iv~as~n--~~qv~i-al~~g~i~~~~~~~~~~~~~-~~-~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~ 149 (290)
..|..++.+ .+++++ +..+|.|..+.+........ .. ...|.+. +.++..++.+..|+.++++.+.. +...
T Consensus 147 ~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~--~~~~ 224 (311)
T d1nr0a1 147 RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD--GTKT 224 (311)
T ss_dssp SCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--CCEE
T ss_pred cccccccccccceeeecccccccccccccccccccccccccccccccccccCcccccccccccccccccccccc--cccc
Confidence 456666654 444444 44568887776543221111 11 2223222 44566788888899999988765 2111
Q ss_pred eeeeeee-----cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCC-cceEEEEEEecCCC
Q psy14552 150 ECSETIQ-----MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPD-LAESLVMIEMGASD 223 (290)
Q Consensus 150 ~~~~~~~-----l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~-~p~Sl~~~~~~~~~ 223 (290)
...+... -...|.++++.+. ..+|+.|..||.|++|.+.....+.. ...+. .+...+-+..
T Consensus 225 ~~~~~~~~~~~~h~~~V~~~~~s~~------~~~l~tgs~Dg~v~iwd~~t~~~~~~---l~~~~~~~~~~~~~~~---- 291 (311)
T d1nr0a1 225 GVFEDDSLKNVAHSGSVFGLTWSPD------GTKIASASADKTIKIWNVATLKVEKT---IPVGTRIEDQQLGIIW---- 291 (311)
T ss_dssp EECBCTTSSSCSSSSCEEEEEECTT------SSEEEEEETTSEEEEEETTTTEEEEE---EECCSSGGGCEEEEEE----
T ss_pred ccccccccccccccccccccccCCC------CCEEEEEeCCCeEEEEECCCCcEEEE---EECCCCccceEEEEEe----
Confidence 1111000 1356888888642 47899999999999999864322222 22222 2222222221
Q ss_pred CCCCCCCCCCccCCceEEEEEecCceEEEEE
Q psy14552 224 PTSSDEPAGPVTLGNLYLYVGLQNGALLRMV 254 (290)
Q Consensus 224 ~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~ 254 (290)
.+. +|+.|-.||.+.-+.
T Consensus 292 ------------~~~-~l~s~s~dG~i~~wd 309 (311)
T d1nr0a1 292 ------------TKQ-ALVSISANGFINFVN 309 (311)
T ss_dssp ------------CSS-CEEEEETTCCEEEEE
T ss_pred ------------cCC-EEEEEECCCEEEEEe
Confidence 122 488888999987664
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.09 E-value=0.31 Score=40.72 Aligned_cols=151 Identities=8% Similarity=0.038 Sum_probs=79.6
Q ss_pred ceEEEEeecCceEEEEeeCCeEEEEEecCCCceec-CCCceEEEE---EeCCCEEEEEEeCCeEEEEEEcCCCCCceeee
Q psy14552 77 KKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKE-SDKKKIVRC---AVNQRQIVIALQGGRLIYFEMHPETGILDECS 152 (290)
Q Consensus 77 ~~Iv~as~n~~qv~ial~~g~i~~~~~~~~~~~~~-~~~~~Ii~a---s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~ 152 (290)
+.++.|..-+.+.++...++.++.+.++....... ..+..-+.| +.++..++.|..|++|++..+... .....
T Consensus 19 ~~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~-~~~~~-- 95 (311)
T d1nr0a1 19 TAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQT-THILK-- 95 (311)
T ss_dssp CCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSST-TCCEE--
T ss_pred CeEEEEEcCCCCEEEEEeCCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecc-ccccc--
Confidence 33333433444444555666666555543221111 222222333 456778999989999999988762 21111
Q ss_pred eeee-cCcceeEEEeeeCCCCCccccEEEEEeC--CCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCC
Q psy14552 153 ETIQ-MESEVLCMALSNAPSGEQMSRFLAVGLA--DNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDE 229 (290)
Q Consensus 153 ~~~~-l~~ei~~l~i~~~~~~~~~~~~l~VGl~--dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~ 229 (290)
.... ....|.++++.+. ..+++++.. +..+.+|.++......... .-.....++. +..
T Consensus 96 ~~~~~~~~~v~~v~~s~d------~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~--~h~~~v~~v~---~~~-------- 156 (311)
T d1nr0a1 96 TTIPVFSGPVKDISWDSE------SKRIAAVGEGRERFGHVFLFDTGTSNGNLT--GQARAMNSVD---FKP-------- 156 (311)
T ss_dssp EEEECSSSCEEEEEECTT------SCEEEEEECCSSCSEEEEETTTCCBCBCCC--CCSSCEEEEE---ECS--------
T ss_pred cccccccCcccccccccc------cccccccccccccccccccccccccccccc--cccccccccc---ccc--------
Confidence 1122 3567889988642 356666664 5668888886432221110 0011223333 311
Q ss_pred CCCCccCCceEEEEEecCceEEEEEE
Q psy14552 230 PAGPVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 230 ~~~~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
.+...|..|-.||.+.-|.+
T Consensus 157 ------~~~~~l~sgs~d~~i~i~d~ 176 (311)
T d1nr0a1 157 ------SRPFRIISGSDDNTVAIFEG 176 (311)
T ss_dssp ------SSSCEEEEEETTSCEEEEET
T ss_pred ------cceeeecccccccccccccc
Confidence 23444666889999877754
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=95.96 E-value=0.32 Score=39.66 Aligned_cols=71 Identities=14% Similarity=0.324 Sum_probs=49.2
Q ss_pred EEEEeCCCEEEEEEe-CCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeC-CCeEEEEEeCC
Q psy14552 118 VRCAVNQRQIVIALQ-GGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLA-DNTVRLISLAP 195 (290)
Q Consensus 118 i~as~~~~~l~Val~-~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~-dg~v~i~~l~~ 195 (290)
++.+.++.++.++.. ++.|+.+.++.....+ ..........++..+++.+. ..+|+++.+ ++.+..+..+.
T Consensus 42 la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~-~~~~~~~~~~~p~~l~~spD------g~~l~v~~~~~~~v~~~~~~~ 114 (333)
T d1ri6a_ 42 MVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL-TFAAESALPGSLTHISTDHQ------GQFVFVGSYNAGNVSVTRLED 114 (333)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTTCCE-EEEEEEECSSCCSEEEECTT------SSEEEEEETTTTEEEEEEEET
T ss_pred EEEeCCCCEEEEEECCCCeEEEEEEeCCCCcE-EEeeecccCCCceEEEEcCC------CCEEeecccCCCceeeecccc
Confidence 555777888877765 7899999998632222 22234456777888888643 468888886 77888888764
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.92 E-value=0.21 Score=40.49 Aligned_cols=109 Identities=13% Similarity=0.234 Sum_probs=69.6
Q ss_pred EEEE-EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeee-cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeC
Q psy14552 117 IVRC-AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQ-MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLA 194 (290)
Q Consensus 117 Ii~a-s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~-l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~ 194 (290)
+++| +.+++.++.|..|++|++..+.. +++ ..++. -...|.++++.+ ..+|+.|..||.+.+|.+.
T Consensus 15 vitc~~~~~~~l~tgs~Dg~i~vWd~~~--~~~---~~~l~~H~~~V~~l~~s~-------~~~l~s~s~D~~i~iw~~~ 82 (355)
T d1nexb2 15 VITCLQFEDNYVITGADDKMIRVYDSIN--KKF---LLQLSGHDGGVWALKYAH-------GGILVSGSTDRTVRVWDIK 82 (355)
T ss_dssp CEEEEEEETTEEEEEETTTEEEEEETTT--TEE---EEEEECCSSCEEEEEEET-------TTEEEEEETTCCEEEEETT
T ss_pred cEEEEEECCCEEEEEeCCCeEEEEECCC--CcE---EEEEECCCCCEEEEEEcC-------CCEEEEEeccccccccccc
Confidence 4556 66777888888899999998764 322 22232 356799998863 2478899999999999986
Q ss_pred CCCceeEeeEEecC-CcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEe
Q psy14552 195 PQDCLKQKNLQGLP-DLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 195 ~~~~l~~~~~~~L~-~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d 256 (290)
.... ....... .......... .....++..|-.||.+.-+.+.
T Consensus 83 ~~~~---~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~d~~i~iw~~~ 126 (355)
T d1nexb2 83 KGCC---THVFEGHNSTVRCLDIVE----------------YKNIKYIVTGSRDNTLHVWKLP 126 (355)
T ss_dssp TTEE---EEEECCCSSCEEEEEEEE----------------ETTEEEEEEEETTSEEEEEECC
T ss_pred cccc---cccccccccccccccccc----------------ccccceeeeecCCCcEEEEEcc
Confidence 4321 1111111 1222222222 1345678999999998877654
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.70 E-value=0.28 Score=39.24 Aligned_cols=70 Identities=11% Similarity=0.225 Sum_probs=50.8
Q ss_pred EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCC
Q psy14552 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQ 196 (290)
Q Consensus 121 s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~ 196 (290)
+.++..++.|..|++|+++.++.. ....++.....-...|.|+++.+.+ ..+++.|..||.+.+|.+...
T Consensus 20 sp~~~~L~s~s~Dg~v~iwd~~~~-~~~~~~~~~~~h~~~V~~v~f~~~~-----~~~l~sg~~d~~v~~w~~~~~ 89 (342)
T d1yfqa_ 20 IPSKSLLLITSWDGSLTVYKFDIQ-AKNVDLLQSLRYKHPLLCCNFIDNT-----DLQIYVGTVQGEILKVDLIGS 89 (342)
T ss_dssp EGGGTEEEEEETTSEEEEEEEETT-TTEEEEEEEEECSSCEEEEEEEESS-----SEEEEEEETTSCEEEECSSSS
T ss_pred eCCCCEEEEEECCCeEEEEEccCC-CcceEEEEecCCCCCEEEEEEeCCC-----CCEEEEcccccceeeeecccc
Confidence 556778999988999999998752 2222222223456789999997542 468899999999999987643
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.22 E-value=0.56 Score=37.56 Aligned_cols=108 Identities=13% Similarity=0.156 Sum_probs=65.1
Q ss_pred eEEEEeecCceEEEEeeCCeEEEEEecCCCceec--CCCceEEEEEeCCCEEEEEEeCC-eEEEEEEcCCCCCceeeeee
Q psy14552 78 KIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKE--SDKKKIVRCAVNQRQIVIALQGG-RLIYFEMHPETGILDECSET 154 (290)
Q Consensus 78 ~Iv~as~n~~qv~ial~~g~i~~~~~~~~~~~~~--~~~~~Ii~as~~~~~l~Val~~~-~i~~l~l~~~~~~l~~~~~~ 154 (290)
....+..++.+.++...++.+..+.... .++.. ..+....+.+.++..++++..++ .++++.+.. ...... ..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~--~~~~~~-~~ 158 (287)
T d1pgua2 83 PKVASANNDGFTAVLTNDDDLLILQSFT-GDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSD--LEVSFD-LK 158 (287)
T ss_dssp EEEEEECSSSEEEEEETTSEEEEEETTT-CCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTE--EEEEEE-CS
T ss_pred eeeeeeccCCceEEEeecccceeeeccc-eeeeeeccccceeeeeeccCcceeeeccccceeeeeeccc--cceeee-ee
Confidence 3444555677777777777776554432 22222 11122333366777888888754 677776653 111010 01
Q ss_pred eecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCC
Q psy14552 155 IQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAP 195 (290)
Q Consensus 155 ~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~ 195 (290)
......+.++++.+. ..+|++|..||.+.+|.+..
T Consensus 159 ~~~~~~v~~~~~s~~------~~~l~~g~~dg~i~i~d~~~ 193 (287)
T d1pgua2 159 TPLRAKPSYISISPS------ETYIAAGDVMGKILLYDLQS 193 (287)
T ss_dssp SCCSSCEEEEEECTT------SSEEEEEETTSCEEEEETTT
T ss_pred eccCCceeEEEeccC------ccccccccccccccceeecc
Confidence 124456888888642 47999999999999999763
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.01 E-value=0.79 Score=38.07 Aligned_cols=151 Identities=16% Similarity=0.196 Sum_probs=76.6
Q ss_pred ceEEEEeec--CceEEE-EeeCCeEEEEEecCCCc---eec-CCCce-EEEEE--eC-CCEEEEEEeCCeEEEEEEcCCC
Q psy14552 77 KKIVRCAVN--QRQIVI-ALQGGRLIYFEMHPVSD---KKE-SDKKK-IVRCA--VN-QRQIVIALQGGRLIYFEMHPET 145 (290)
Q Consensus 77 ~~Iv~as~n--~~qv~i-al~~g~i~~~~~~~~~~---~~~-~~~~~-Ii~as--~~-~~~l~Val~~~~i~~l~l~~~~ 145 (290)
..|.+++.. +++.++ +..+|.+.++++..... +.. ..+.. |.+.+ .+ +..++.+..|+.|+++++..
T Consensus 160 ~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~-- 237 (325)
T d1pgua1 160 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS-- 237 (325)
T ss_dssp SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT--
T ss_pred cccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecc--
Confidence 456665554 445444 55678888877543211 111 11122 33333 33 34566677899999998764
Q ss_pred CCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCC--c-ceEEEEEEecCC
Q psy14552 146 GILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPD--L-AESLVMIEMGAS 222 (290)
Q Consensus 146 ~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~--~-p~Sl~~~~~~~~ 222 (290)
+.....++....+..-...++... ...+|+.|..||.|++|.+...+.+.. ..+.. . ...+.+..
T Consensus 238 ~~~~~~l~~~~~~v~~~~~s~~~~-----dg~~l~s~s~D~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~---- 305 (325)
T d1pgua1 238 GEFLKYIEDDQEPVQGGIFALSWL-----DSQKFATVGADATIRVWDVTTSKCVQK---WTLDKQQLGNQQVGVVA---- 305 (325)
T ss_dssp CCEEEECCBTTBCCCSCEEEEEES-----SSSEEEEEETTSEEEEEETTTTEEEEE---EECCTTCGGGCEEEEEE----
T ss_pred ccccccccccccccccceeeeecc-----CCCEEEEEeCCCeEEEEECCCCCEEEE---EEecCCcccCeEEEEEE----
Confidence 322111111111111111222111 135888999999999999864333222 22322 2 23333332
Q ss_pred CCCCCCCCCCCccCCceEEEEEecCceEEEEE
Q psy14552 223 DPTSSDEPAGPVTLGNLYLYVGLQNGALLRMV 254 (290)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~ 254 (290)
.+..+|+.|=.||.+.-|+
T Consensus 306 -------------~~~~~l~s~s~dg~i~vwd 324 (325)
T d1pgua1 306 -------------TGNGRIISLSLDGTLNFYE 324 (325)
T ss_dssp -------------EETTEEEEEETTSCEEEEE
T ss_pred -------------CCCCEEEEEECCCEEEEEE
Confidence 1223578888899887765
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.70 E-value=0.79 Score=36.62 Aligned_cols=116 Identities=15% Similarity=0.248 Sum_probs=68.6
Q ss_pred CceEEEEeecCceEEEEeeCCe-EEEEEecCCC---ceecCCCceE--EEEEeCCCEEEEEEeCCeEEEEEEcCCCCCce
Q psy14552 76 KKKIVRCAVNQRQIVIALQGGR-LIYFEMHPVS---DKKESDKKKI--VRCAVNQRQIVIALQGGRLIYFEMHPETGILD 149 (290)
Q Consensus 76 ~~~Iv~as~n~~qv~ial~~g~-i~~~~~~~~~---~~~~~~~~~I--i~as~~~~~l~Val~~~~i~~l~l~~~~~~l~ 149 (290)
..+.++.+.++.++++...++. +..+.+.... ....+....+ ++.+.++..+++|..++.|+++.+.. +..
T Consensus 120 ~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~--~~~- 196 (287)
T d1pgua2 120 NSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS--REV- 196 (287)
T ss_dssp SSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--TEE-
T ss_pred cceeeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecc--ccc-
Confidence 3456667777888888888775 3333322111 1111222224 23356677899998899999998765 221
Q ss_pred eeeeeee-cCcceeEEEeeeCCCC----CccccEEEEEeCCCeEEEEEeCC
Q psy14552 150 ECSETIQ-MESEVLCMALSNAPSG----EQMSRFLAVGLADNTVRLISLAP 195 (290)
Q Consensus 150 ~~~~~~~-l~~ei~~l~i~~~~~~----~~~~~~l~VGl~dg~v~i~~l~~ 195 (290)
...... -...|.++++.+.... .....+++.|..||.+++|.++.
T Consensus 197 -~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~ 246 (287)
T d1pgua2 197 -KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR 246 (287)
T ss_dssp -EECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSC
T ss_pred -ccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCC
Confidence 111111 1345778887654311 12357899999999999999864
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.44 E-value=1.1 Score=37.15 Aligned_cols=155 Identities=11% Similarity=0.106 Sum_probs=84.8
Q ss_pred ceEEEEee--cCceEEEEeeCCeEEEEEecCCCceec-CC-CceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCcee
Q psy14552 77 KKIVRCAV--NQRQIVIALQGGRLIYFEMHPVSDKKE-SD-KKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDE 150 (290)
Q Consensus 77 ~~Iv~as~--n~~qv~ial~~g~i~~~~~~~~~~~~~-~~-~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~ 150 (290)
..|.+.+. +..+++.+..+|.|............. .. ...+.+. ..++..++.+..++.+++..+.. .. .
T Consensus 122 ~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~--~~--~ 197 (388)
T d1erja_ 122 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT--GQ--C 197 (388)
T ss_dssp CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--TE--E
T ss_pred CCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccc--cc--c
Confidence 34555544 356788888888887776543221111 11 1223333 34456688888889999887654 11 1
Q ss_pred eeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEe--cCCcceEEEEEEecCCCCCCCC
Q psy14552 151 CSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQG--LPDLAESLVMIEMGASDPTSSD 228 (290)
Q Consensus 151 ~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~--L~~~p~Sl~~~~~~~~~~~~~~ 228 (290)
...........++.+.+. ...++++|..||.+.+|.+.....+....... ...-...+.-+.+.
T Consensus 198 -~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s-------- 263 (388)
T d1erja_ 198 -SLTLSIEDGVTTVAVSPG-----DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT-------- 263 (388)
T ss_dssp -EEEEECSSCEEEEEECST-----TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEEC--------
T ss_pred -ccccccccccccccccCC-----CCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEEC--------
Confidence 122333444555555433 25789999999999999876433332221111 11111223333331
Q ss_pred CCCCCccCCceEEEEEecCceEEEEEEe
Q psy14552 229 EPAGPVTLGNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 229 ~~~~~~~~~~~~L~iGl~dG~l~~~~~d 256 (290)
....+|+.|-.||.+.-|.+.
T Consensus 264 -------~~~~~l~s~~~d~~i~iwd~~ 284 (388)
T d1erja_ 264 -------RDGQSVVSGSLDRSVKLWNLQ 284 (388)
T ss_dssp -------TTSSEEEEEETTSEEEEEEC-
T ss_pred -------CCCCEEEEEECCCcEEEEecc
Confidence 123468899999998877653
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.16 E-value=1.1 Score=35.95 Aligned_cols=101 Identities=8% Similarity=0.107 Sum_probs=56.8
Q ss_pred EeecCceEEEEeeCCeEEEEEecCCCceec-CCCce-EEEEEeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCc
Q psy14552 82 CAVNQRQIVIALQGGRLIYFEMHPVSDKKE-SDKKK-IVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMES 159 (290)
Q Consensus 82 as~n~~qv~ial~~g~i~~~~~~~~~~~~~-~~~~~-Ii~as~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ 159 (290)
.+.+..+++.+..+|.|..+.......... ..+.. +.+++.++..++.|..|+.|+++.+.. .. .... .. ..
T Consensus 209 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~--~~--~~~~-~~-~~ 282 (355)
T d1nexb2 209 YDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAND--YS--RKFS-YH-HT 282 (355)
T ss_dssp EETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECSSEEEEECTTSEEEEEETTT--CC--EEEE-EE-CT
T ss_pred ccccceeeecccccceEEeeeccccccccccccccccccccccccceeeeeecccccccccccc--cc--eecc-cc-cC
Confidence 344577888888888887766543222111 22222 233366667788888899999998765 21 2111 11 12
Q ss_pred ceeE-EEeeeCCCCCccccEEEEEeCCCeEEEEEeCC
Q psy14552 160 EVLC-MALSNAPSGEQMSRFLAVGLADNTVRLISLAP 195 (290)
Q Consensus 160 ei~~-l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~ 195 (290)
.+.+ ..+.+. ..+++.| .||.|.+|.+..
T Consensus 283 ~~~~~~~~~~~------~~~l~~g-~d~~i~vwd~~t 312 (355)
T d1nexb2 283 NLSAITTFYVS------DNILVSG-SENQFNIYNLRS 312 (355)
T ss_dssp TCCCCCEEEEC------SSEEEEE-ETTEEEEEETTT
T ss_pred CceEEEEEcCC------CCEEEEE-eCCEEEEEECCC
Confidence 2222 223221 3455544 699999999864
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.03 E-value=0.27 Score=39.41 Aligned_cols=76 Identities=13% Similarity=0.130 Sum_probs=49.5
Q ss_pred CcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEe-eEEecCCcceEEEEEEecCCCCCCCCCCCCCccC
Q psy14552 158 ESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQK-NLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTL 236 (290)
Q Consensus 158 ~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~-~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~ 236 (290)
...|+++++.+. ..+|++|.+||+|++|.++........ ....-.....++.... .
T Consensus 11 ~d~I~~l~fsp~------~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~-----------------~ 67 (342)
T d1yfqa_ 11 KDYISDIKIIPS------KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID-----------------N 67 (342)
T ss_dssp SSCEEEEEEEGG------GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE-----------------S
T ss_pred CCCEEEEEEeCC------CCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeC-----------------C
Confidence 346899999853 579999999999999999754332222 1112222234444432 2
Q ss_pred CceEEEEEecCceEEEEEEe
Q psy14552 237 GNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 237 ~~~~L~iGl~dG~l~~~~~d 256 (290)
+..+|+.|-.||.+.-+.+.
T Consensus 68 ~~~~l~sg~~d~~v~~w~~~ 87 (342)
T d1yfqa_ 68 TDLQIYVGTVQGEILKVDLI 87 (342)
T ss_dssp SSEEEEEEETTSCEEEECSS
T ss_pred CCCEEEEcccccceeeeecc
Confidence 34568999999998877653
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.30 E-value=1.8 Score=35.69 Aligned_cols=113 Identities=11% Similarity=0.046 Sum_probs=62.3
Q ss_pred CCCE-EEEEEeCCeEEEEEEcCCCCCceeeee-eeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCcee
Q psy14552 123 NQRQ-IVIALQGGRLIYFEMHPETGILDECSE-TIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLK 200 (290)
Q Consensus 123 ~~~~-l~Val~~~~i~~l~l~~~~~~l~~~~~-~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~ 200 (290)
.+.. ++.+..|+.++++++.. ........ .......|.++++.+. ...+++.|..||.|.+|.+.....+.
T Consensus 170 ~~~~~~~~~~~d~~v~~~d~~~--~~~~~~~~~~~~~~~~v~~v~~~pd-----~~~~l~s~~~d~~i~iwd~~~~~~~~ 242 (325)
T d1pgua1 170 SRPMRSMTVGDDGSVVFYQGPP--FKFSASDRTHHKQGSFVRDVEFSPD-----SGEFVITVGSDRKISCFDGKSGEFLK 242 (325)
T ss_dssp SSSCEEEEEETTTEEEEEETTT--BEEEEEECSSSCTTCCEEEEEECST-----TCCEEEEEETTCCEEEEETTTCCEEE
T ss_pred cccceEEEeecccccccccccc--cccceecccccCCCCccEEeeeccc-----cceeccccccccceeeeeeccccccc
Confidence 3444 55565689999988764 22111111 1123456888888653 25688899999999999876433322
Q ss_pred EeeEEecCCcc-eEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeCCCCcc
Q psy14552 201 QKNLQGLPDLA-ESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDL 262 (290)
Q Consensus 201 ~~~~~~L~~~p-~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~~~~~l 262 (290)
.+. -...| .++..... .....+|..|-.||.+.-| |..++++
T Consensus 243 ~l~---~~~~~v~~~~~s~~---------------~~dg~~l~s~s~D~~i~iw--d~~~~~~ 285 (325)
T d1pgua1 243 YIE---DDQEPVQGGIFALS---------------WLDSQKFATVGADATIRVW--DVTTSKC 285 (325)
T ss_dssp ECC---BTTBCCCSCEEEEE---------------ESSSSEEEEEETTSEEEEE--ETTTTEE
T ss_pred ccc---ccccccccceeeee---------------ccCCCEEEEEeCCCeEEEE--ECCCCCE
Confidence 221 11112 22222211 0122358888899987655 4445543
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.63 E-value=1.8 Score=33.83 Aligned_cols=97 Identities=14% Similarity=0.244 Sum_probs=57.7
Q ss_pred EEEEEEeCCeEEEEEEcCCCCCceeeeeeee-cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeE
Q psy14552 126 QIVIALQGGRLIYFEMHPETGILDECSETIQ-MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNL 204 (290)
Q Consensus 126 ~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~-l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~ 204 (290)
.++.+..|+.|+++.+.. +.. ..+.. -...|.++.+.+. ..+|+.|..||.|.+|.+.....+....
T Consensus 219 ~~~~~~~d~~i~~~~~~~--~~~---~~~~~~~~~~v~~~~~~~~------~~~l~s~~~dg~i~iwd~~~~~~~~~~~- 286 (317)
T d1vyhc1 219 FLLSGSRDKTIKMWDVST--GMC---LMTLVGHDNWVRGVLFHSG------GKFILSCADDKTLRVWDYKNKRCMKTLN- 286 (317)
T ss_dssp EEEEEETTSEEEEEETTT--TEE---EEEEECCSSCEEEEEECSS------SSCEEEEETTTEEEEECCTTSCCCEEEE-
T ss_pred eeEeccCCCEEEEEECCC--CcE---EEEEeCCCCCEEEEEECCC------CCEEEEEECCCeEEEEECCCCcEEEEEc-
Confidence 466676788998887654 321 12222 3556777777542 4689999999999999986443333331
Q ss_pred EecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEE
Q psy14552 205 QGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRM 253 (290)
Q Consensus 205 ~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~ 253 (290)
.-.....++ .+. ....+|+.|-.||.+.-+
T Consensus 287 -~h~~~V~~~---~~s---------------~~~~~l~s~s~Dg~i~iW 316 (317)
T d1vyhc1 287 -AHEHFVTSL---DFH---------------KTAPYVVTGSVDQTVKVW 316 (317)
T ss_dssp -CCSSCEEEE---EEC---------------SSSSCEEEEETTSEEEEE
T ss_pred -CCCCCEEEE---EEc---------------CCCCEEEEEeCCCeEEEe
Confidence 111122333 231 122358889999987544
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.04 E-value=1.5 Score=37.25 Aligned_cols=115 Identities=11% Similarity=0.155 Sum_probs=64.9
Q ss_pred ceEEEEeec-CceEEEEeeCCeEEEEEecCCCc---eecC----CC-ceEEEE--EeCCCEEEEEEeCCe---EEEEEEc
Q psy14552 77 KKIVRCAVN-QRQIVIALQGGRLIYFEMHPVSD---KKES----DK-KKIVRC--AVNQRQIVIALQGGR---LIYFEMH 142 (290)
Q Consensus 77 ~~Iv~as~n-~~qv~ial~~g~i~~~~~~~~~~---~~~~----~~-~~Ii~a--s~~~~~l~Val~~~~---i~~l~l~ 142 (290)
..+.+++.+ +.+++.+..+|.|..+.+..... +... .+ ..|.+. +.++..++.|..|++ |++..+.
T Consensus 185 ~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~ 264 (393)
T d1sq9a_ 185 QFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETE 264 (393)
T ss_dssp CCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETT
T ss_pred CcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccc
Confidence 334555555 45677777788888877653211 1111 11 123222 456677888877764 5555544
Q ss_pred CCCCCceeeeeee-----------ecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCce
Q psy14552 143 PETGILDECSETI-----------QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCL 199 (290)
Q Consensus 143 ~~~~~l~~~~~~~-----------~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l 199 (290)
. +.....+... .-...|.++++.+. ..+|+.|..||+|++|.++....+
T Consensus 265 ~--g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd------~~~l~S~s~D~~v~vWd~~~g~~~ 324 (393)
T d1sq9a_ 265 F--GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS------GETLCSAGWDGKLRFWDVKTKERI 324 (393)
T ss_dssp T--CCEEEEECBC--------CCBSBSSCEEEEEECSS------SSEEEEEETTSEEEEEETTTTEEE
T ss_pred c--ceeeeeeccccccccceeeeecccCceeeeccCCC------CCeeEEECCCCEEEEEECCCCCEE
Confidence 3 2211111100 01245888888642 478999999999999998754333
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=89.43 E-value=1.4 Score=35.96 Aligned_cols=92 Identities=13% Similarity=0.171 Sum_probs=51.9
Q ss_pred EEEEEeCCCEEEEEEeC----------CeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCC
Q psy14552 117 IVRCAVNQRQIVIALQG----------GRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADN 186 (290)
Q Consensus 117 Ii~as~~~~~l~Val~~----------~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg 186 (290)
.++.+.++..++++..+ ..|.++.... +. . ..++..++.+.++.+.+. + +..+++.+.+|+
T Consensus 253 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t--~~--~-~~~~~~~~~~~~~a~spD--G--~~~l~v~~~~d~ 323 (355)
T d2bbkh_ 253 QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT--GE--R-LAKFEMGHEIDSINVSQD--E--KPLLYALSTGDK 323 (355)
T ss_dssp CEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT--CC--E-EEEEEEEEEECEEEECCS--S--SCEEEEEETTTT
T ss_pred EEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCC--Cc--E-EEEecCCCCEEEEEEcCC--C--CeEEEEEECCCC
Confidence 35555666665555432 2455554432 32 2 234556777888888653 2 122344455699
Q ss_pred eEEEEEeCCCCceeEeeEEecCCcceEEEEEEe
Q psy14552 187 TVRLISLAPQDCLKQKNLQGLPDLAESLVMIEM 219 (290)
Q Consensus 187 ~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~ 219 (290)
.|.+|.+.....+..+ ..++..|..+....|
T Consensus 324 ~i~v~D~~tg~~~~~i--~~~G~~p~~i~~~d~ 354 (355)
T d2bbkh_ 324 TLYIHDAESGEELRSV--NQLGHGPQVITTADM 354 (355)
T ss_dssp EEEEEETTTCCEEEEE--CCCCSSCCEEECCCC
T ss_pred EEEEEECCCCCEEEEE--eCcCCCccEEEeCCC
Confidence 9999987532222222 246778888876653
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=86.70 E-value=2.6 Score=33.70 Aligned_cols=73 Identities=14% Similarity=0.208 Sum_probs=47.7
Q ss_pred CCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEee
Q psy14552 124 QRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKN 203 (290)
Q Consensus 124 ~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~ 203 (290)
+..++.. .++.+.++.+.. + +.......++.+.++++.+. ..+|++|.+||.|.+|... .++.++
T Consensus 263 ~~~~~~~-~~~~v~v~d~~~--~---~~~~~~~~~~~~~~va~s~D------G~~l~v~~~d~~v~v~D~~---t~~~i~ 327 (346)
T d1jmxb_ 263 DPNQIYG-VLNRLAKYDLKQ--R---KLIKAANLDHTYYCVAFDKK------GDKLYLGGTFNDLAVFNPD---TLEKVK 327 (346)
T ss_dssp CTTEEEE-EESEEEEEETTT--T---EEEEEEECSSCCCEEEECSS------SSCEEEESBSSEEEEEETT---TTEEEE
T ss_pred CCEEEEe-cCCeEEEEECCC--C---cEEEEEcCCCCEEEEEEcCC------CCEEEEEeCCCcEEEEECc---cCCEEE
Confidence 3334433 345677765543 3 22344566788888998753 4688899999999999976 466666
Q ss_pred EEecCCcc
Q psy14552 204 LQGLPDLA 211 (290)
Q Consensus 204 ~~~L~~~p 211 (290)
...++.-+
T Consensus 328 ~i~~p~g~ 335 (346)
T d1jmxb_ 328 NIKLPGGD 335 (346)
T ss_dssp EEECSSSC
T ss_pred EEECCCCC
Confidence 66666433
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.75 E-value=6.7 Score=33.36 Aligned_cols=79 Identities=16% Similarity=0.146 Sum_probs=49.8
Q ss_pred EEEEE-eCCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEE
Q psy14552 127 IVIAL-QGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQ 205 (290)
Q Consensus 127 l~Val-~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~ 205 (290)
++|+. .|++|+++.+.. ++ .+.++.....+-.++|.+. ..+++++..||.+.+|.++.... ......
T Consensus 34 ~~V~~~~dg~v~vwD~~t--~~---~~~~l~~g~~~~~vafSPD------Gk~l~~~~~d~~v~vwd~~t~~~-~~~~~i 101 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDS--KK---IVKVIDTGYAVHISRMSAS------GRYLLVIGRDARIDMIDLWAKEP-TKVAEI 101 (426)
T ss_dssp EEEEETTTTEEEEEETTT--CS---EEEEEECCSSEEEEEECTT------SCEEEEEETTSEEEEEETTSSSC-EEEEEE
T ss_pred EEEEEcCCCEEEEEECCC--Cc---EEEEEeCCCCeeEEEECCC------CCEEEEEeCCCCEEEEEccCCce-eEEEEE
Confidence 44554 478999887654 33 2345566667777888653 36889999999999999864332 223233
Q ss_pred ecCCcceEEEEE
Q psy14552 206 GLPDLAESLVMI 217 (290)
Q Consensus 206 ~L~~~p~Sl~~~ 217 (290)
..+.-|+.+...
T Consensus 102 ~~~~~~~~~~~s 113 (426)
T d1hzua2 102 KIGIEARSVESS 113 (426)
T ss_dssp ECCSEEEEEEEC
T ss_pred eCCCCCcceEEe
Confidence 444456665443
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=85.31 E-value=7 Score=31.15 Aligned_cols=65 Identities=12% Similarity=0.141 Sum_probs=42.0
Q ss_pred EeCCCEEEEEEeCC--eEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCC
Q psy14552 121 AVNQRQIVIALQGG--RLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQ 196 (290)
Q Consensus 121 s~~~~~l~Val~~~--~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~ 196 (290)
+.++..++++..+. .|++..... +.+.. ...-+..+.++++.+. ..+|+.+..++.+.+|.++..
T Consensus 51 spDg~~l~~~~~~~g~~v~v~d~~~--~~~~~---~~~~~~~v~~~~~spd------g~~l~~~~~~~~~~~~~~~~~ 117 (360)
T d1k32a3 51 GGDTKVAFIHGTREGDFLGIYDYRT--GKAEK---FEENLGNVFAMGVDRN------GKFAVVANDRFEIMTVDLETG 117 (360)
T ss_dssp CSSSEEEEEEEETTEEEEEEEETTT--CCEEE---CCCCCCSEEEEEECTT------SSEEEEEETTSEEEEEETTTC
T ss_pred CCCCCEEEEEEcCCCCEEEEEECCC--CcEEE---eeCCCceEEeeeeccc------ccccceecccccccccccccc
Confidence 45666677665543 455555443 33222 2235677888888653 478999999999999988643
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=84.98 E-value=2.2 Score=33.96 Aligned_cols=61 Identities=13% Similarity=0.133 Sum_probs=42.7
Q ss_pred CCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEec
Q psy14552 133 GGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGL 207 (290)
Q Consensus 133 ~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L 207 (290)
++.+.++.+.. + ........+..+.++++.+. ..+|++|..||.|.+|... .++.++...+
T Consensus 259 ~~~i~v~d~~~--~---~~~~~~~~~~~~~~~~~s~d------G~~l~v~~~~~~i~v~D~~---t~~~v~~i~~ 319 (337)
T d1pbyb_ 259 YNVLESFDLEK--N---ASIKRVPLPHSYYSVNVSTD------GSTVWLGGALGDLAAYDAE---TLEKKGQVDL 319 (337)
T ss_dssp ESEEEEEETTT--T---EEEEEEECSSCCCEEEECTT------SCEEEEESBSSEEEEEETT---TCCEEEEEEC
T ss_pred cccEEEEECCC--C---cEEEEEcCCCCEEEEEECCC------CCEEEEEeCCCcEEEEECC---CCcEEEEEEC
Confidence 56777776654 2 22345667888999998743 4688999999999999986 3555554444
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=82.39 E-value=5 Score=31.85 Aligned_cols=66 Identities=11% Similarity=0.053 Sum_probs=44.1
Q ss_pred cccEEEEEeCCCeEEEEEeCCCCceeEeeEEecC--CcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEE
Q psy14552 175 MSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLP--DLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLR 252 (290)
Q Consensus 175 ~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~--~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~ 252 (290)
...|+++|..+++|.+|.++. .+.++...++ ..|.++.+.. ++...+..+.++|.+..
T Consensus 7 ~~~~l~~~~~~~~v~v~D~~t---~~~~~t~~~~~~~~p~~l~~sp-----------------DG~~l~v~~~~~~~v~~ 66 (346)
T d1jmxb_ 7 GHEYMIVTNYPNNLHVVDVAS---DTVYKSCVMPDKFGPGTAMMAP-----------------DNRTAYVLNNHYGDIYG 66 (346)
T ss_dssp TCEEEEEEETTTEEEEEETTT---TEEEEEEECSSCCSSCEEEECT-----------------TSSEEEEEETTTTEEEE
T ss_pred CCcEEEEEcCCCEEEEEECCC---CCEEEEEEcCCCCCcceEEECC-----------------CCCEEEEEECCCCcEEE
Confidence 368999999999999999874 3445444553 3688877653 34443344567888876
Q ss_pred EEEeCCCCcc
Q psy14552 253 MVVDQTSGDL 262 (290)
Q Consensus 253 ~~~d~~~~~l 262 (290)
+ |..++.+
T Consensus 67 ~--d~~t~~~ 74 (346)
T d1jmxb_ 67 I--DLDTCKN 74 (346)
T ss_dssp E--ETTTTEE
T ss_pred E--eCccCee
Confidence 6 5556644
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=81.70 E-value=1.6 Score=34.93 Aligned_cols=64 Identities=8% Similarity=0.152 Sum_probs=41.9
Q ss_pred cEEEEEeCCCeEEEEEeCCCCceeEeeEEecC---CcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEE
Q psy14552 177 RFLAVGLADNTVRLISLAPQDCLKQKNLQGLP---DLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRM 253 (290)
Q Consensus 177 ~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~---~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~ 253 (290)
.|++++..|+.|.+|.+.. .+.++...++ ..|.++++.. +++..+..|..+|.+.-|
T Consensus 2 ~~~vt~~~d~~v~v~D~~s---~~~~~~i~~~~~~~~~~~i~~sp-----------------Dg~~l~v~~~~~~~v~v~ 61 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEK---MAVDKVITIADAGPTPMVPMVAP-----------------GGRIAYATVNKSESLVKI 61 (337)
T ss_dssp EEEEEEETTTEEEEEETTT---TEEEEEEECTTCTTCCCCEEECT-----------------TSSEEEEEETTTTEEEEE
T ss_pred eEEEEEcCCCEEEEEECCC---CeEEEEEECCCCCCCccEEEECC-----------------CCCEEEEEECCCCeEEEE
Confidence 4889999999999999863 3444444443 3577776552 344423467889988766
Q ss_pred EEeCCCCcc
Q psy14552 254 VVDQTSGDL 262 (290)
Q Consensus 254 ~~d~~~~~l 262 (290)
|..++++
T Consensus 62 --D~~t~~~ 68 (337)
T d1pbyb_ 62 --DLVTGET 68 (337)
T ss_dssp --ETTTCCE
T ss_pred --ECCCCcE
Confidence 4556654
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.63 E-value=9 Score=28.99 Aligned_cols=108 Identities=11% Similarity=0.182 Sum_probs=65.5
Q ss_pred ceEEEEeecCceEEEEeeCCeEEEEEecCCCceec-CC-CceEEEEEeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeee
Q psy14552 77 KKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKE-SD-KKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSET 154 (290)
Q Consensus 77 ~~Iv~as~n~~qv~ial~~g~i~~~~~~~~~~~~~-~~-~~~Ii~as~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~ 154 (290)
+.|.+.+.++++++-+..+|.|....++....... .. ...|.+.+-++..++.|..|+.+++..+.. +. .. ..
T Consensus 16 ~~V~c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~~--~~--~~-~~ 90 (293)
T d1p22a2 16 KGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNT--GE--ML-NT 90 (293)
T ss_dssp CCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSS--CC--EE-EE
T ss_pred CCEEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecccceeeccccccccccccccc--cc--cc-cc
Confidence 44667777888888888889998777653321111 22 223444466777888888899999988775 22 11 11
Q ss_pred eecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCC
Q psy14552 155 IQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQ 196 (290)
Q Consensus 155 ~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~ 196 (290)
... .......... ....++.+..++.+.+|.....
T Consensus 91 ~~~-~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 125 (293)
T d1p22a2 91 LIH-HCEAVLHLRF------NNGMMVTCSKDRSIAVWDMASP 125 (293)
T ss_dssp ECC-CCSCEEEEEC------CTTEEEEEETTSCEEEEECSSS
T ss_pred ccc-cccccccccc------cccceeecccccceeEeecccc
Confidence 111 1111122221 2457888888999999887643
|