Diaphorina citri psyllid: psy14698


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200------
MSGGHYKVAQNYFIFNFQTKNAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSFSSSKLTKPADLVPADEPIVIVIGAMAHGQVDTDYTEGNISISNFPLSAALTCTKLCSAFEEAWGVT
cccccEEEEEccccEEECccccEEEEccHHHHHHHHHcccccccccccHHHHHHHHHHccHHHHcccEEEEEEEcccEEEEEcccccccccHHHHHHHHHHHHHHcccccccccccEEEEECcccccccccccCEEEEEEcccccccccccccccccEEEEEccECcccccccccccEEEECcccccHHHHHHHHHHHHHHHHccc
**GGHYKVAQNYFIFNFQTKNAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSFSSSKLTKPADLVPADEPIVIVIGAMAHGQVDTDYTEGNISISNFPLSAALTCTKLCSAFEEAWGVT
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MSGGHYKVAQNYFIFNFQTKNAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSFSSSKLTKPADLVPADEPIVIVIGAMAHGQVDTDYTEGNISISNFPLSAALTCTKLCSAFEEAWGVT

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Ribosomal RNA small subunit methyltransferase nep-1 Involved in 40S ribosomal subunit biogenesis and 18S rRNA processing. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 1248 in human 18S rRNA. Thus, appears to be the methyltransferase involved in the biosynthesis of the hypermodified N1-methyl-N3-(3-amino-3-carboxypropyl) pseudouridine (m1acp3-Psi) conserved in eukaryotic 18S rRNA.very confidentQ9XX15
Ribosomal RNA small subunit methyltransferase NEP1 Involved in 40S ribosomal subunit biogenesis and 18S rRNA processing. Specifically catalyzes the N1-methylation of pseudouridine at position 1248 (Psi1248) in 18S rRNA. Thus, appears to be the methyltransferase involved in the biosynthesis of the hypermodified N1-methyl-N3-(3-amino-3-carboxypropyl) pseudouridine (m1acp3-Psi) in position 1248 in 18S rRNA. Is not able to methylate uridine at this position.very confidentQ92979
Ribosomal RNA small subunit methyltransferase NEP1 Involved in 40S ribosomal subunit biogenesis and 18S rRNA processing. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 1248 in human 18S rRNA. Thus, appears to be the methyltransferase involved in the biosynthesis of the hypermodified N1-methyl-N3-(3-amino-3-carboxypropyl) pseudouridine (m1acp3-Psi) conserved in eukaryotic 18S rRNA.confidentO35130

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0070037 [MF]rRNA (pseudouridine) methyltransferase activityconfidentGO:0008649, GO:0003824, GO:0008757, GO:0008173, GO:0016740, GO:0016741, GO:0003674, GO:0008168
GO:0044428 [CC]nuclear partconfidentGO:0005575, GO:0043231, GO:0005634, GO:0044464, GO:0005623, GO:0005622, GO:0044446, GO:0043229, GO:0044424, GO:0043227, GO:0043226, GO:0044422
GO:0043232 [CC]intracellular non-membrane-bounded organelleconfidentGO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0043229, GO:0043228, GO:0044424, GO:0043226
GO:0030686 [CC]90S preribosomeprobableGO:0032991, GO:0044464, GO:0030684, GO:0005623, GO:0030529, GO:0005575, GO:0044424, GO:0005622
GO:0005730 [CC]nucleolusprobableGO:0005575, GO:0043232, GO:0031981, GO:0043233, GO:0005634, GO:0044464, GO:0031974, GO:0005622, GO:0044446, GO:0070013, GO:0043229, GO:0043228, GO:0044428, GO:0005623, GO:0044424, GO:0043227, GO:0043226, GO:0044422, GO:0043231
GO:0009792 [BP]embryo development ending in birth or egg hatchingprobableGO:0032502, GO:0032501, GO:0044707, GO:0048856, GO:0044767, GO:0009790, GO:0008150, GO:0007275, GO:0044699
GO:0032040 [CC]small-subunit processomeprobableGO:0032991, GO:0044464, GO:0030684, GO:0005623, GO:0030529, GO:0005575, GO:0044424, GO:0005622
GO:0040007 [BP]growthprobableGO:0008150
GO:0002119 [BP]nematode larval developmentprobableGO:0032502, GO:0032501, GO:0044707, GO:0009791, GO:0002164, GO:0008150, GO:0007275, GO:0044699
GO:0005880 [CC]nuclear microtubuleprobableGO:0043234, GO:0005856, GO:0015630, GO:0032991, GO:0043231, GO:0043232, GO:0043227, GO:0005634, GO:0044464, GO:0005623, GO:0005622, GO:0044446, GO:0043229, GO:0044430, GO:0044428, GO:0005575, GO:0044424, GO:0043228, GO:0005874, GO:0043226, GO:0044422
GO:0005829 [CC]cytosolprobableGO:0005737, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0044444, GO:0044424
GO:0000472 [BP]endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)probableGO:0090304, GO:0090305, GO:0034641, GO:0006807, GO:1901360, GO:0034660, GO:0000479, GO:0000478, GO:0006139, GO:0044260, GO:0042274, GO:0071840, GO:0042254, GO:0071704, GO:0010467, GO:0006364, GO:0000967, GO:0000966, GO:0022613, GO:0016070, GO:0034470, GO:0034471, GO:0009987, GO:0006725, GO:0000462, GO:0008150, GO:0008152, GO:0000469, GO:0046483, GO:0090502, GO:0044238, GO:0016072, GO:0090501, GO:0030490, GO:0044237, GO:0043170, GO:0044085, GO:0006396
GO:0043414 [BP]macromolecule methylationprobableGO:0044260, GO:0009987, GO:0044237, GO:0043170, GO:0071704, GO:0043412, GO:0008150, GO:0008152, GO:0032259
GO:0000480 [BP]endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)probableGO:0090304, GO:0090305, GO:0034641, GO:0006807, GO:0034660, GO:0071840, GO:0000478, GO:0006139, GO:0044260, GO:0042274, GO:1901360, GO:0042254, GO:0071704, GO:0010467, GO:0006364, GO:0022613, GO:0016070, GO:0034470, GO:0009987, GO:0006725, GO:0000479, GO:0000462, GO:0008150, GO:0008152, GO:0000469, GO:0046483, GO:0090502, GO:0044238, GO:0016072, GO:0090501, GO:0030490, GO:0044237, GO:0043170, GO:0044085, GO:0006396
GO:0000447 [BP]endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)probableGO:0008152, GO:0090304, GO:0090305, GO:0034641, GO:0006807, GO:1901360, GO:0034660, GO:0000479, GO:0000478, GO:0006139, GO:0044260, GO:0042274, GO:0071840, GO:0042254, GO:0071704, GO:0010467, GO:0006364, GO:0022613, GO:0016070, GO:0034470, GO:0009987, GO:0006725, GO:0000460, GO:0000462, GO:0008150, GO:0000466, GO:0000469, GO:0046483, GO:0090502, GO:0044238, GO:0016072, GO:0090501, GO:0030490, GO:0044237, GO:0043170, GO:0044085, GO:0006396
GO:0042742 [BP]defense response to bacteriumprobableGO:0009607, GO:0050896, GO:0009617, GO:0006952, GO:0006950, GO:0008150, GO:0051707, GO:0051704
GO:0000747 [BP]conjugation with cellular fusionprobableGO:0000746, GO:0000003, GO:0009987, GO:0019953, GO:0044764, GO:0008150, GO:0051704
GO:0022008 [BP]neurogenesisprobableGO:0032502, GO:0048856, GO:0044707, GO:0007399, GO:0048869, GO:0030154, GO:0008150, GO:0032501, GO:0044763, GO:0048731, GO:0009987, GO:0007275, GO:0044699
GO:0019843 [MF]rRNA bindingprobableGO:0097159, GO:0003674, GO:0005488, GO:0003676, GO:1901363, GO:0003723

Prediction of Enzyme Commission Number ?

No confident prediction of EC number!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 3OII, chain A
Confidence level:very confident
Coverage over the Query: 3-205
View the alignment between query and template
View the model in PyMOL