Psyllid ID: psy14698

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200------
Protein Sequence
MSGGHYKVAQNYFIFNFQTKNAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSFSSSKLTKPADLVPADEPIVIVIGAMAHGQVDTDYTEGNISISNFPLSAALTCTKLCSAFEEAWGVT
Secondary Structure (PSIPRED)
cccccEEEEEccccEEEEccccEEEEccHHHHHHHHHcccccccccccHHHHHHHHHHccHHHHcccEEEEEEEcccEEEEEcccccccccHHHHHHHHHHHHHHcccccccccccEEEEEEcccccccccccEEEEEEEcccccccccccccccccEEEEEccEEcccccccccccEEEEEcccccHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEcccEEEccccccEEEEccHHHHHHHHHccccHHcccccHHHHHHHHHHcccHHccccEEEEEEEcccEEEEEcccccccccHHHHHHHHHHHHHHcccccccccHHHHHEEcccHHHHccccccEEEEEEcccccccHHHHccccccEEEEEEccccccccHHHcccEEEEccccHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MSGGHYKVAQNYFIFNFqtknafellncddhgyllkkdgrepgscrpdiVHQCLLMLMDSPLNRAGLLQVYIHTEKNvlievnpqtriprTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIknpitqhlpvgvrkigtsfssskltkpadlvpadepiVIVIGAMahgqvdtdytegnisisnfplsaALTCTKLCSAFEEAWGVT
Flexible Loop (DISEMBL)
MSGGHYKVAQNYFIFNFQTKNAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEknvlievnpqtrIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIknpitqhlpvgvRKIGTsfssskltkpadlvpADEPIVIVIGAMAHGQVDTDYTEGNISISNFPLSAALTCTKLCSAFEEAWGVT
Low Complexity Region (SEG)
MSGGHYKVAQNYFIFNFQTKNAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSFSSSKLTKPADLVPADEPIVIVIGAMAHGQVDTDYTEGNISISNFPLSAALTCTKLCSAFEEAWGVT
Disordered region (IsUnstruct)
*****YKVAQNYFIFNFQTKNAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSFS***LTKPADLVPADEPIVIVIGAMAHGQVDTDYTEGNISISNFPLSAALTCTKLCSAFEEAWG**
Disordered Region (DISOPRED)
**GGHYKVAQNYFIFNFQTKNAFELLNCDDHGYLLK*D****GSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEVNPQTRIPRTFKRFAGLMVQLLHKFS********KLLKVIKNPITQHLPVGVRKIGTSFSSSKLTKPADLVPADEPIVIVIGAMAHGQVDTDYTEGNISISNFPLSAALTCTKLCSAFEEAWGVT
Disordered Region (DISEMBL)
MSGGHYKVAQNYFIFNFQTKNAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSFSSSKLTKPADLVPADEPIVIVIGAMAHGQVDTDYTEGNISISNFPLSAALTCTKLCSAFEEAWGVT
Disordered Region (DISPRO)
**GGHYKVAQNYFIFNFQTKNAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSFSSSKLTKPADLVPADEPIVIVIGAMAHGQVDTDYTEGNISISNFPLSAALTCTKLCSAFEEAWGVT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSGGHYKVAQNYFIFNFQTKNAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSFSSSKLTKPADLVPADEPIVIVIGAMAHGQVDTDYTEGNISISNFPLSAALTCTKLCSAFEEAWGVT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	206	2.2.26 [Sep-21-2011]
Q9W4J5	252	Ribosomal RNA small subun	yes	N/A	0.917	0.75	0.670	5e-75
O35130	244	Ribosomal RNA small subun	yes	N/A	0.898	0.758	0.691	3e-73
Q92979	244	Ribosomal RNA small subun	yes	N/A	0.888	0.75	0.704	3e-73
Q9XX15	231	Ribosomal RNA small subun	yes	N/A	0.970	0.865	0.504	2e-56
Q96UP2	229	Ribosomal RNA small subun	yes	N/A	0.873	0.786	0.538	1e-54
Q06287	252	Ribosomal RNA small subun	yes	N/A	0.898	0.734	0.534	2e-54
Q9P8P7	267	Ribosomal RNA small subun	N/A	N/A	0.893	0.689	0.536	1e-53
Q10107	359	Probable ribosomal RNA sm	yes	N/A	0.888	0.509	0.545	3e-52
Q5JI44	220	Ribosomal RNA small subun	yes	N/A	0.854	0.8	0.310	1e-17
A3DNG9	230	Ribosomal RNA small subun	yes	N/A	0.849	0.760	0.354	4e-17

>sp|Q9W4J5|NEP1_DROME Ribosomal RNA small subunit methyltransferase NEP1 OS=Drosophila melanogaster GN=CG3527 PE=3 SV=2

 Score =  280 bits (716), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 132/197 (67%), Positives = 154/197 (78%), Gaps = 8/197 (4%)

Query: 18  QTKNAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKN 77
           +  N FELLNCDDH  +++K+ R+PGSCRPDI HQCLLML DSPLNRAGLLQV++ TE N
Sbjct: 56  KVHNTFELLNCDDHAGIMRKNQRDPGSCRPDITHQCLLMLFDSPLNRAGLLQVFVRTEHN 115

Query: 78  VLIEVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIG 137
           VLIE+NPQTRIPRTFKRFAGLMVQLLHKF +RA+DS+ +L+ VIKNPIT H+PVG +K  
Sbjct: 116 VLIEINPQTRIPRTFKRFAGLMVQLLHKFQIRANDSSRRLMSVIKNPITDHVPVGCKKYA 175

Query: 138 TSFSSSKLTKPADLVP--------ADEPIVIVIGAMAHGQVDTDYTEGNISISNFPLSAA 189
            SFS   L    DLVP         DEP+VIVIGA AHG + TDYTE   SISN+PLSAA
Sbjct: 176 MSFSGKLLPNCRDLVPHGDETSASYDEPVVIVIGAFAHGVLKTDYTEELFSISNYPLSAA 235

Query: 190 LTCTKLCSAFEEAWGVT 206
           + C+K+CSAFEE WGV 
Sbjct: 236 IACSKICSAFEEVWGVV 252

Involved in 40S ribosomal subunit biogenesis and 18S rRNA processing. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 1248 in human 18S rRNA. Thus, appears to be the methyltransferase involved in the biosynthesis of the hypermodified N1-methyl-N3-(3-amino-3-carboxypropyl) pseudouridine (m1acp3-Psi) conserved in eukaryotic 18S rRNA.
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|O35130|NEP1_MOUSE Ribosomal RNA small subunit methyltransferase NEP1 OS=Mus musculus GN=Emg1 PE=1 SV=1

 Score =  274 bits (701), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 128/185 (69%), Positives = 149/185 (80%)

Query: 21  NAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLI 80
             +ELLNCD H  +L K+GR+PG  RPDI HQ LLMLMDSPLNRAGLLQVYIHT+KNVLI
Sbjct: 59  KTYELLNCDRHKSMLLKNGRDPGEVRPDITHQSLLMLMDSPLNRAGLLQVYIHTQKNVLI 118

Query: 81  EVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSF 140
           EVNPQTRIPRTF RF GLMVQLLHK SVRA+D   KLLKVIKNP++ H PVG  KIGTSF
Sbjct: 119 EVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKIGTSF 178

Query: 141 SSSKLTKPADLVPADEPIVIVIGAMAHGQVDTDYTEGNISISNFPLSAALTCTKLCSAFE 200
           S   ++   +LVP+ +P+V V+GA AHG+V  +YTE  +SISN+PLSAALTC K+ +AFE
Sbjct: 179 SVEDISDIRELVPSSDPVVFVVGAFAHGKVSVEYTEKMVSISNYPLSAALTCAKVTTAFE 238

Query: 201 EAWGV 205
           E WGV
Sbjct: 239 EVWGV 243

Involved in 40S ribosomal subunit biogenesis and 18S rRNA processing. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 1248 in human 18S rRNA. Thus, appears to be the methyltransferase involved in the biosynthesis of the hypermodified N1-methyl-N3-(3-amino-3-carboxypropyl) pseudouridine (m1acp3-Psi) conserved in eukaryotic 18S rRNA.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q92979|NEP1_HUMAN Ribosomal RNA small subunit methyltransferase NEP1 OS=Homo sapiens GN=EMG1 PE=1 SV=4

 Score =  274 bits (700), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 129/183 (70%), Positives = 149/183 (81%)

Query: 23  FELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEV 82
           +ELLNCD H  +L K+GR+PG  RPDI HQ LLMLMDSPLNRAGLLQVYIHT+KNVLIEV
Sbjct: 61  YELLNCDKHKSILLKNGRDPGEARPDITHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEV 120

Query: 83  NPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSFSS 142
           NPQTRIPRTF RF GLMVQLLHK SVRA+D   KLLKVIKNP++ H PVG  K+GTSFS 
Sbjct: 121 NPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKVGTSFSI 180

Query: 143 SKLTKPADLVPADEPIVIVIGAMAHGQVDTDYTEGNISISNFPLSAALTCTKLCSAFEEA 202
             ++   +LVP+ +PIV V+GA AHG+V  +YTE  +SISN+PLSAALTC KL +AFEE 
Sbjct: 181 PVVSDVRELVPSSDPIVFVVGAFAHGKVSVEYTEKMVSISNYPLSAALTCAKLTTAFEEV 240

Query: 203 WGV 205
           WGV
Sbjct: 241 WGV 243

Involved in 40S ribosomal subunit biogenesis and 18S rRNA processing. Specifically catalyzes the N1-methylation of pseudouridine at position 1248 (Psi1248) in 18S rRNA. Thus, appears to be the methyltransferase involved in the biosynthesis of the hypermodified N1-methyl-N3-(3-amino-3-carboxypropyl) pseudouridine (m1acp3-Psi) in position 1248 in 18S rRNA. Is not able to methylate uridine at this position.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9XX15|NEP1_CAEEL Ribosomal RNA small subunit methyltransferase nep-1 OS=Caenorhabditis elegans GN=Y39A1A.14 PE=3 SV=1

 Score =  218 bits (555), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 102/202 (50%), Positives = 139/202 (68%), Gaps = 2/202 (0%)

Query: 6   YKVAQNYFIFNFQTKNAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRA 65
           Y V +   +   +    + +L+ D H   L+K  ++P   RPDI+HQCLL L+DSPLNRA
Sbjct: 29  YVVLEGCSLETAKVGGEYAILSSDKHANFLRKQKKDPADYRPDILHQCLLNLLDSPLNRA 88

Query: 66  GLLQVYIHTEKNVLIEVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPI 125
           G L+V+  T KNVL++V+PQ RIPRTF RF GLMVQLLHK S+RA+++  KL+ V+KNP+
Sbjct: 89  GKLRVFFRTSKNVLVDVSPQCRIPRTFDRFCGLMVQLLHKLSIRAAETTQKLMSVVKNPV 148

Query: 126 TQHLPVGVRKIGTSFSSSKLTKPADLVP--ADEPIVIVIGAMAHGQVDTDYTEGNISISN 183
           + HLPVG RK+  SF+  +LT    LV    DEP+V++IG +A G++  DY +    ISN
Sbjct: 149 SNHLPVGSRKMLMSFNVPELTMANKLVAPETDEPLVLIIGGIARGKIVVDYNDSETKISN 208

Query: 184 FPLSAALTCTKLCSAFEEAWGV 205
           +PLSAALTC K+ S  EE WG+
Sbjct: 209 YPLSAALTCAKVTSGLEEIWGI 230

Involved in 40S ribosomal subunit biogenesis and 18S rRNA processing. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 1248 in human 18S rRNA. Thus, appears to be the methyltransferase involved in the biosynthesis of the hypermodified N1-methyl-N3-(3-amino-3-carboxypropyl) pseudouridine (m1acp3-Psi) conserved in eukaryotic 18S rRNA.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q96UP2|NEP1_CANGA Ribosomal RNA small subunit methyltransferase NEP1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=NEP1 PE=3 SV=1

 Score =  212 bits (540), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 99/184 (53%), Positives = 135/184 (73%), Gaps = 4/184 (2%)

Query: 25  LLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEVNP 84
           LLNCDDH  +L+K GR+    RPDI HQCLL L+DSP+N+AGLLQVYI T+KNVLIEVNP
Sbjct: 46  LLNCDDHQGILRKMGRDIAEARPDITHQCLLTLLDSPINKAGLLQVYILTKKNVLIEVNP 105

Query: 85  QTRIPRTFKRFAGLMVQLLHKFSVRASD-SNIKLLKVIKNPITQHLPVGVRKIGTSFSSS 143
             RIPRTFKRF+GLMVQLLHK S+R+ + SN  LL+V+KNP+T++LP   RK+  SF  +
Sbjct: 106 SVRIPRTFKRFSGLMVQLLHKLSIRSMESSNTHLLRVVKNPVTKYLPADCRKVTLSF-DA 164

Query: 144 KLTKPADLVPADEPIVIVIGAMA--HGQVDTDYTEGNISISNFPLSAALTCTKLCSAFEE 201
           ++ +P + +   + + + +GAMA  H     +Y +  I+ISN+PLSA++ C+K C   E+
Sbjct: 165 EVMRPQEYLGDKQSVCVFVGAMARGHDSFADEYVDDKIAISNYPLSASVACSKFCHGAED 224

Query: 202 AWGV 205
           AW +
Sbjct: 225 AWAI 228

Involved in 40S ribosomal subunit biogenesis and 18S rRNA processing. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 1189 in S.cerevisiae 18S rRNA. Thus, appears to be the methyltransferase involved in the biosynthesis of the hypermodified N1-methyl-N3-(3-amino-3-carboxypropyl) pseudouridine (m1acp3-Psi) conserved in eukaryotic 18S rRNA.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q06287|NEP1_YEAST Ribosomal RNA small subunit methyltransferase NEP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=EMG1 PE=1 SV=1

 Score =  211 bits (538), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 101/189 (53%), Positives = 133/189 (70%), Gaps = 4/189 (2%)

Query: 21  NAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLI 80
           + + LLNCDDH  LLKK GR+    RPDI HQCLL L+DSP+N+AG LQVYI T + +LI
Sbjct: 63  DKYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSRGILI 122

Query: 81  EVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSF 140
           EVNP  RIPRTFKRF+GLMVQLLHK S+R+ +S  KLLKVIKNPIT HLP   RK+  SF
Sbjct: 123 EVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSF 182

Query: 141 SSS--KLTKPADLVPADEPIVIVIGAMAHGQVD--TDYTEGNISISNFPLSAALTCTKLC 196
            +   ++    + +  DE I + +GAMA G+ +   +Y +  + +SN+PLSA++ C+K C
Sbjct: 183 DAPVIRVQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKFC 242

Query: 197 SAFEEAWGV 205
              E+AW +
Sbjct: 243 HGAEDAWNI 251

Has an essential role in 40S ribosomal subunit biogenesis and 18S rRNA processing. Probably catalyzes the N1-methylation of pseudouridine at position 1189 (Psi1189) in 18S rRNA. Thus, is most likely the methyltransferase involved in the biosynthesis of the hypermodified N1-methyl-N3-(3-amino-3-carboxypropyl) pseudouridine (m1acp3-Psi) in position 1189 in 18S rRNA. Is also involved in ribosome assembly.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9P8P7|NEP1_CANAX Ribosomal RNA small subunit methyltransferase NEP1 OS=Candida albicans GN=NEP1 PE=3 SV=1

 Score =  209 bits (532), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 102/190 (53%), Positives = 133/190 (70%), Gaps = 6/190 (3%)

Query: 21  NAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLI 80
           + F LLNCDDH  LL+K GR+    RPDI HQCLL L+DSP+N+AG LQVYI T + VLI
Sbjct: 78  DRFALLNCDDHQGLLRKMGRDIAEARPDITHQCLLTLLDSPINKAGRLQVYIQTARGVLI 137

Query: 81  EVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSF 140
           EVNP  RIPRTFKRF+GLMVQLLHK S+R+ +S   LLKVIKNPIT HLP   RK+  SF
Sbjct: 138 EVNPSVRIPRTFKRFSGLMVQLLHKLSIRSENSKEVLLKVIKNPITDHLPTKCRKVTLSF 197

Query: 141 SSSKLTKPADLVPA---DEPIVIVIGAMAHGQVD--TDYTEGNISISNFPLSAALTCTKL 195
             ++L +  D V     +E I + +GAMA G+ +   ++ +  I +S++PLSA++ C+K 
Sbjct: 198 -DAELKRVQDYVTTLDENESICVFVGAMARGKDNFADEFVDEKIGLSDYPLSASVACSKF 256

Query: 196 CSAFEEAWGV 205
           C   E+ WG+
Sbjct: 257 CHGCEDVWGI 266

Involved in 40S ribosomal subunit biogenesis and 18S rRNA processing. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 1189 in S.cerevisiae 18S rRNA. Thus, appears to be the methyltransferase involved in the biosynthesis of the hypermodified N1-methyl-N3-(3-amino-3-carboxypropyl) pseudouridine (m1acp3-Psi) conserved in eukaryotic 18S rRNA.

Candida albicans (taxid: 5476)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q10107|MRA1_SCHPO Probable ribosomal RNA small subunit methyltransferase mra1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mra1 PE=1 SV=2

 Score =  204 bits (519), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 102/187 (54%), Positives = 130/187 (69%), Gaps = 4/187 (2%)

Query: 23  FELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEV 82
           ++LLNCDDH  +LKK  R     RPDI HQCLL L+DSPLN+AG LQVYIHT K VLIEV
Sbjct: 172 YQLLNCDDHQGILKKLNRNIAQARPDITHQCLLTLLDSPLNKAGRLQVYIHTAKKVLIEV 231

Query: 83  NPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSFSS 142
           NP  RIPRTFKRF+GLMVQLLHK S+R+ + N KLLKVIKNP+T +LP   RK   SF +
Sbjct: 232 NPSVRIPRTFKRFSGLMVQLLHKLSIRSVNGNEKLLKVIKNPVTDYLPPNCRKATLSFDA 291

Query: 143 SKL--TKPADLVPADEPIVIVIGAMAHGQVD--TDYTEGNISISNFPLSAALTCTKLCSA 198
             +   K  + +  ++ + I IGAMAHG  D    + +  ISIS++PLSA++ C+K   +
Sbjct: 292 PTVPPRKYLETLQPNQSVCIAIGAMAHGPDDFSDGWVDEKISISDYPLSASIACSKFLHS 351

Query: 199 FEEAWGV 205
            E+  G+
Sbjct: 352 MEDFLGI 358

Involved in 40S ribosomal subunit biogenesis and 18S rRNA processing. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 1189 in S.cerevisiae 18S rRNA. Thus, appears to be the methyltransferase involved in the biosynthesis of the hypermodified N1-methyl-N3-(3-amino-3-carboxypropyl) pseudouridine (m1acp3-Psi) conserved in eukaryotic 18S rRNA (By similarity). Essential for cell growth. It also has a key role in promoting the mating function.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q5JI44|NEP1_PYRKO Ribosomal RNA small subunit methyltransferase Nep1 OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=nep1 PE=3 SV=1

 Score = 89.7 bits (221), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 95/187 (50%), Gaps = 11/187 (5%)

Query: 25  LLNCDDHGYLLKK--DGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEV 82
           +L+   H   LKK  DG   G  RPDIVH CLL  ++S  N+ G L+VY+HT  + +I +
Sbjct: 39  ILDSTYHHAALKKLPDGDRRG--RPDIVHICLLNALESIANKEGFLRVYVHTRNDEVIHI 96

Query: 83  NPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLP-VGVRKIGTSFS 141
            P+TR+PR + RF GLM  L  K +V      ++LL++ K P+   +  +    +     
Sbjct: 97  KPETRLPRNYNRFLGLMESLFKKGAV---PEGLELLRIEKKPLESLIEDINPDTVFIMHE 153

Query: 142 SSKLTKP---ADLVPADEPIVIVIGAMAHGQVDTDYTEGNISISNFPLSAALTCTKLCSA 198
             +L +P    +++ + +  V+V+G   HG          +S+   PL A    +++   
Sbjct: 154 EGELIRPRSFGEILASHQNPVVVVGGFPHGDFMRPIEGTKVSLYREPLMAWTVVSEVIVN 213

Query: 199 FEEAWGV 205
           FE A G+
Sbjct: 214 FEAALGL 220

Methyltransferase involved in ribosomal biogenesis. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 914 in M.jannaschii 16S rRNA.

Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (taxid: 69014)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A3DNG9|NEP1_STAMF Ribosomal RNA small subunit methyltransferase Nep1 OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=nep1 PE=3 SV=1

 Score = 87.8 bits (216), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/192 (35%), Positives = 96/192 (50%), Gaps = 17/192 (8%)

Query: 25  LLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEVNP 84
           LL+   H + +KK   +    RPDIVH  LL  ++SPLN+ G L++YIHT    +I V P
Sbjct: 44  LLDVSLHYHAMKKLKDKEKRGRPDIVHISLLNALESPLNKEGYLRIYIHTYPGHIIFVKP 103

Query: 85  QTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSF--SS 142
           +TRIPR + RF GLM QLL    V   DS+  LL V    I+  L   + K G       
Sbjct: 104 ETRIPRNYNRFVGLMEQLLIHGKV-PPDSDDPLLYVKTMTISDLLE-KINKNGIILLREH 161

Query: 143 SKLTKPADLV--PADEPIVIVIGAMAHGQVDTDYTEGNISIS-------NFPLSAALTCT 193
            +  KP ++V    +    I IG   HG    DY++  ISIS       N PL+  +T +
Sbjct: 162 GEKEKPENIVKYAVENNYAIGIGGFPHG----DYSQEIISISKAEFSIYNKPLTTWITIS 217

Query: 194 KLCSAFEEAWGV 205
           ++    E  + +
Sbjct: 218 RVIVGAEHLYNI 229

Methyltransferase involved in ribosomal biogenesis. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 914 in M.jannaschii 16S rRNA.

Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) (taxid: 399550)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
340721745	633	PREDICTED: coiled-coil domain-containing	0.961	0.312	0.722	9e-85
379698964	236	Nep1 protein [Bombyx mori] gi|359552278|	0.966	0.843	0.743	1e-84
383859383	236	PREDICTED: ribosomal RNA small subunit m	0.898	0.783	0.778	2e-84
357617377	236	hypothetical protein KGM_03399 [Danaus p	0.966	0.843	0.728	5e-84
350416108	236	PREDICTED: ribosomal RNA small subunit m	0.966	0.843	0.728	8e-84
380013709	234	PREDICTED: ribosomal RNA small subunit m	0.898	0.790	0.778	2e-83
389615656	235	nucleolar essential protein 1, partial [	0.961	0.842	0.737	5e-83
332026522	235	Putative ribosome biogenesis protein NEP	0.961	0.842	0.727	7e-83
307201554	235	Probable ribosome biogenesis protein NEP	0.898	0.787	0.772	1e-82
328788635	234	PREDICTED: ribosomal RNA small subunit m	0.898	0.790	0.767	2e-82

>gi|340721745|ref|XP_003399275.1| PREDICTED: coiled-coil domain-containing protein 151-like [Bombus terrestris]

 Score =  318 bits (815), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 143/198 (72%), Positives = 167/198 (84%)

Query: 8   VAQNYFIFNFQTKNAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGL 67
           + +N  + + +  N+F+LLNCDDH  +LKK+ R+PG CRPDI HQCLLMLMDSPLNRAGL
Sbjct: 435 ILENAQLESVKVGNSFQLLNCDDHVNILKKNNRDPGMCRPDITHQCLLMLMDSPLNRAGL 494

Query: 68  LQVYIHTEKNVLIEVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQ 127
           LQVY+HTEKNVLIEVNPQTRIPRTFKRFAGLMVQLLHKFS+RASD  +KLLKVIKNP+T 
Sbjct: 495 LQVYVHTEKNVLIEVNPQTRIPRTFKRFAGLMVQLLHKFSIRASDGPMKLLKVIKNPVTD 554

Query: 128 HLPVGVRKIGTSFSSSKLTKPADLVPADEPIVIVIGAMAHGQVDTDYTEGNISISNFPLS 187
           HLPVG RKI  SFS++K+  P +LV +DEPI + +GAMAHGQV  DY E  ISISN+PLS
Sbjct: 555 HLPVGCRKIAMSFSANKVQNPRELVLSDEPIAVTVGAMAHGQVKPDYVEDTISISNYPLS 614

Query: 188 AALTCTKLCSAFEEAWGV 205
            ALTC+KLCSAFEE WG+
Sbjct: 615 GALTCSKLCSAFEEVWGI 632

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|379698964|ref|NP_001243954.1| Nep1 protein [Bombyx mori] gi|359552278|gb|AEV53624.1| Nep1 protein [Bombyx mori]

 Score =  317 bits (813), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 148/199 (74%), Positives = 171/199 (85%)

Query: 8   VAQNYFIFNFQTKNAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGL 67
           + +N  + + +  N+FELLNCDDHG++L+K+ R+PGSCRPDI HQ LLMLMDSPLNRAGL
Sbjct: 38  ILENAQLESVKNGNSFELLNCDDHGHILRKNDRDPGSCRPDITHQSLLMLMDSPLNRAGL 97

Query: 68  LQVYIHTEKNVLIEVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQ 127
           LQVYIHTEKNVLIE+NPQTRIPRTFKRFAGLMVQLLHKF++RASD  +KLLKVIKNP+T 
Sbjct: 98  LQVYIHTEKNVLIEINPQTRIPRTFKRFAGLMVQLLHKFAIRASDGPMKLLKVIKNPVTS 157

Query: 128 HLPVGVRKIGTSFSSSKLTKPADLVPADEPIVIVIGAMAHGQVDTDYTEGNISISNFPLS 187
           HLPVGV+KI  SFSS  +    DLVP DEPIV+VIGAMAHG+V+ DY+E  ISISN+PLS
Sbjct: 158 HLPVGVKKITMSFSSKIVQNCRDLVPKDEPIVMVIGAMAHGKVEVDYSEDVISISNYPLS 217

Query: 188 AALTCTKLCSAFEEAWGVT 206
           AALTC KLCSAFEE WGV 
Sbjct: 218 AALTCAKLCSAFEEVWGVA 236

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383859383|ref|XP_003705174.1| PREDICTED: ribosomal RNA small subunit methyltransferase NEP1-like [Megachile rotundata]

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 144/185 (77%), Positives = 162/185 (87%)

Query: 21  NAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLI 80
           N+FELLNCDDH  +L+K+ R+ GSCRPDI HQCLLMLMDSPLNRAGLLQVY+HTEKNVLI
Sbjct: 51  NSFELLNCDDHASILRKNNRDAGSCRPDITHQCLLMLMDSPLNRAGLLQVYVHTEKNVLI 110

Query: 81  EVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSF 140
           EVNPQTRIPRTFKRFAGLMVQLLHKFSVRASD  +KLLKVIKNP+T HLPVG RKI  SF
Sbjct: 111 EVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDGPMKLLKVIKNPVTDHLPVGCRKIAMSF 170

Query: 141 SSSKLTKPADLVPADEPIVIVIGAMAHGQVDTDYTEGNISISNFPLSAALTCTKLCSAFE 200
           S+ K+  P +LVP+DEPI I +GAMAHGQ+  DYTE  ISISN+PLS ALTC+KLC+AFE
Sbjct: 171 SAKKVQNPRELVPSDEPIAIAVGAMAHGQITPDYTEDTISISNYPLSGALTCSKLCTAFE 230

Query: 201 EAWGV 205
           E WG+
Sbjct: 231 EVWGI 235

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357617377|gb|EHJ70754.1| hypothetical protein KGM_03399 [Danaus plexippus]

 Score =  315 bits (808), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 145/199 (72%), Positives = 171/199 (85%)

Query: 8   VAQNYFIFNFQTKNAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGL 67
           + +N  +   ++ N+FELLNCDDHG++L+K+ R+PGSCRPDI HQ LLMLMDSPLNRAGL
Sbjct: 38  ILENAHLETVKSGNSFELLNCDDHGHILRKNDRDPGSCRPDIAHQSLLMLMDSPLNRAGL 97

Query: 68  LQVYIHTEKNVLIEVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQ 127
           LQVYIHTEKNVLIE+NPQTRIPRTFKRFAGLMVQLLHKF++RASD  +KLLKVIKNPIT 
Sbjct: 98  LQVYIHTEKNVLIEINPQTRIPRTFKRFAGLMVQLLHKFAIRASDGPMKLLKVIKNPITS 157

Query: 128 HLPVGVRKIGTSFSSSKLTKPADLVPADEPIVIVIGAMAHGQVDTDYTEGNISISNFPLS 187
           HLPVGV+KI  SFSS  +    +LVP DEPIV+++GAMAHG+V+ DY+E  ISISN+PLS
Sbjct: 158 HLPVGVKKITMSFSSKMVKNCRELVPQDEPIVLIVGAMAHGKVEVDYSEDVISISNYPLS 217

Query: 188 AALTCTKLCSAFEEAWGVT 206
           AALTC K+CSAFEE WGV 
Sbjct: 218 AALTCAKVCSAFEEVWGVV 236

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350416108|ref|XP_003490843.1| PREDICTED: ribosomal RNA small subunit methyltransferase NEP1-like [Bombus impatiens]

 Score =  315 bits (806), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 145/199 (72%), Positives = 167/199 (83%)

Query: 8   VAQNYFIFNFQTKNAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGL 67
           + +N  + + +  N+F+LLNCDDH  +LKK+ R+PG CRPDI HQCLLMLMDSPLNRAGL
Sbjct: 38  ILENAQLESVKVGNSFQLLNCDDHVNILKKNNRDPGMCRPDITHQCLLMLMDSPLNRAGL 97

Query: 68  LQVYIHTEKNVLIEVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQ 127
           LQVYIHTEKNVLIEVNPQTRIPRTFKRFAGLMVQLLHKFS+RASD  +KLLKVIKNP+T 
Sbjct: 98  LQVYIHTEKNVLIEVNPQTRIPRTFKRFAGLMVQLLHKFSIRASDGPMKLLKVIKNPVTD 157

Query: 128 HLPVGVRKIGTSFSSSKLTKPADLVPADEPIVIVIGAMAHGQVDTDYTEGNISISNFPLS 187
           HLPVG RKI  SFS++K+  P +LVP DEPI + +GAMAHGQV  DY E  ISISN+PLS
Sbjct: 158 HLPVGCRKIAMSFSANKVQNPRELVPPDEPIAVTVGAMAHGQVKPDYIEDTISISNYPLS 217

Query: 188 AALTCTKLCSAFEEAWGVT 206
            ALTC+KLCSAFEE WG+ 
Sbjct: 218 GALTCSKLCSAFEEVWGIV 236

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380013709|ref|XP_003690892.1| PREDICTED: ribosomal RNA small subunit methyltransferase NEP1-like [Apis florea]

 Score =  313 bits (803), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 144/185 (77%), Positives = 164/185 (88%)

Query: 21  NAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLI 80
           N+FELLNCDDH  +LKK+ ++PG+CRPDI HQCLLMLMDSPLNRAGLLQVYIHTEKNVLI
Sbjct: 49  NSFELLNCDDHINILKKNNKDPGTCRPDITHQCLLMLMDSPLNRAGLLQVYIHTEKNVLI 108

Query: 81  EVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSF 140
           E+NPQTRIPRTFKRFAGLMVQLLHKF+VRASD  +KLLKVIKNPIT HLPVG RKI  SF
Sbjct: 109 EINPQTRIPRTFKRFAGLMVQLLHKFNVRASDGPMKLLKVIKNPITDHLPVGCRKIAMSF 168

Query: 141 SSSKLTKPADLVPADEPIVIVIGAMAHGQVDTDYTEGNISISNFPLSAALTCTKLCSAFE 200
           +++K+  P +LVP+DEPI IVIGAMAHGQV +DY E  ISISN+PLS ALTC+KLC+AFE
Sbjct: 169 NANKVQNPRELVPSDEPIAIVIGAMAHGQVKSDYIEDTISISNYPLSGALTCSKLCTAFE 228

Query: 201 EAWGV 205
           E W +
Sbjct: 229 EVWKI 233

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389615656|dbj|BAM20781.1| nucleolar essential protein 1, partial [Papilio polytes]

 Score =  312 bits (800), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 146/198 (73%), Positives = 168/198 (84%)

Query: 8   VAQNYFIFNFQTKNAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGL 67
           + +N  +   +  N+FELLNCDDH  +L+++ R+PGSCRPDI HQ LLMLMDSPLNRAGL
Sbjct: 38  ILENAQLETVKNGNSFELLNCDDHAGILRRNDRDPGSCRPDITHQSLLMLMDSPLNRAGL 97

Query: 68  LQVYIHTEKNVLIEVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQ 127
           LQVYIHTEKNVLIE+NPQTRIPRTFKRFAGLMVQLLHKF++RASD  +KLLKVIKNPIT 
Sbjct: 98  LQVYIHTEKNVLIEINPQTRIPRTFKRFAGLMVQLLHKFAIRASDGPMKLLKVIKNPITS 157

Query: 128 HLPVGVRKIGTSFSSSKLTKPADLVPADEPIVIVIGAMAHGQVDTDYTEGNISISNFPLS 187
           HLPVGVRKI  SFSS  +    DLVP +EPIV+VIGAMAHG+V+ DY+E  ISISN+PLS
Sbjct: 158 HLPVGVRKITMSFSSKMVQTCRDLVPKEEPIVLVIGAMAHGKVEADYSEEVISISNYPLS 217

Query: 188 AALTCTKLCSAFEEAWGV 205
           AALTC KLC+AFEE WGV
Sbjct: 218 AALTCAKLCTAFEEVWGV 235

Source: Papilio polytes

Species: Papilio polytes

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026522|gb|EGI66643.1| Putative ribosome biogenesis protein NEP1 [Acromyrmex echinatior]

 Score =  311 bits (798), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 144/198 (72%), Positives = 167/198 (84%)

Query: 8   VAQNYFIFNFQTKNAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGL 67
           + +N  + + +  N+FELLNCDDH  +LKK  R+PG+CRPDI HQCLLMLMDSPLNRAGL
Sbjct: 37  ILENSQLESVKVGNSFELLNCDDHTNILKKYKRDPGTCRPDITHQCLLMLMDSPLNRAGL 96

Query: 68  LQVYIHTEKNVLIEVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQ 127
           LQVYIHTEKNVLIE+NPQTRIPRTFKRFAGLMVQLLHK+ VRASD  +KLLKVIKNPIT 
Sbjct: 97  LQVYIHTEKNVLIEINPQTRIPRTFKRFAGLMVQLLHKYGVRASDGPMKLLKVIKNPITN 156

Query: 128 HLPVGVRKIGTSFSSSKLTKPADLVPADEPIVIVIGAMAHGQVDTDYTEGNISISNFPLS 187
           HLPVG RKI  SF++SK+  P DLVP ++PI +V+GAMAHGQV TDYTE   SISN+PLS
Sbjct: 157 HLPVGCRKILMSFNASKVLNPRDLVPTEDPIAVVVGAMAHGQVKTDYTEDTYSISNYPLS 216

Query: 188 AALTCTKLCSAFEEAWGV 205
            A+ C+KLC+AFEE WGV
Sbjct: 217 GAIACSKLCTAFEEVWGV 234

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307201554|gb|EFN81317.1| Probable ribosome biogenesis protein NEP1 [Harpegnathos saltator]

 Score =  311 bits (796), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 143/185 (77%), Positives = 164/185 (88%)

Query: 21  NAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLI 80
           N FELLNCDDH  +LKK  R+PGSCRPDI HQCLLMLMDSPLNRAGLLQVYIHTEKNVLI
Sbjct: 50  NNFELLNCDDHTAILKKYNRDPGSCRPDITHQCLLMLMDSPLNRAGLLQVYIHTEKNVLI 109

Query: 81  EVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSF 140
           E+NPQTRIPRTFKRFAGL+VQLLHK+++RASD  +KLLKVIKNP++ HLPVG RKI  SF
Sbjct: 110 EINPQTRIPRTFKRFAGLIVQLLHKYNIRASDGPMKLLKVIKNPVSDHLPVGCRKILMSF 169

Query: 141 SSSKLTKPADLVPADEPIVIVIGAMAHGQVDTDYTEGNISISNFPLSAALTCTKLCSAFE 200
           SS+K+  P +LVP++EPI IVIGAMAHGQV TDYTE  I+IS +PLSAA+TC+KLC+AFE
Sbjct: 170 SSNKVQNPRELVPSEEPIAIVIGAMAHGQVKTDYTEDIIAISKYPLSAAITCSKLCTAFE 229

Query: 201 EAWGV 205
           E WG+
Sbjct: 230 EVWGI 234

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328788635|ref|XP_393347.3| PREDICTED: ribosomal RNA small subunit methyltransferase NEP1-like [Apis mellifera]

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 142/185 (76%), Positives = 162/185 (87%)

Query: 21  NAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLI 80
           N+FELLNCDDH  +LKK+ ++PG+CRPDI HQCLLMLMDSPLNRAGLLQVYIHTEKNVLI
Sbjct: 49  NSFELLNCDDHINILKKNNKDPGTCRPDIAHQCLLMLMDSPLNRAGLLQVYIHTEKNVLI 108

Query: 81  EVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSF 140
           E+NPQTRIPRTFKRFAGLMVQLLHKF+VRASD  +KLLKVIKNPIT HLPVG RKI  SF
Sbjct: 109 EINPQTRIPRTFKRFAGLMVQLLHKFNVRASDGPMKLLKVIKNPITDHLPVGCRKIAMSF 168

Query: 141 SSSKLTKPADLVPADEPIVIVIGAMAHGQVDTDYTEGNISISNFPLSAALTCTKLCSAFE 200
           +++K+  P +LVP DEPI I++GAMAHGQV  DY E  ISISN+PLS ALTC+KLC+AFE
Sbjct: 169 NANKIQNPRELVPPDEPIAIIVGAMAHGQVKPDYIEDTISISNYPLSGALTCSKLCTAFE 228

Query: 201 EAWGV 205
           E W +
Sbjct: 229 EVWKI 233

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
UNIPROTKB|F1N832	238	EMG1 "Uncharacterized protein"	0.888	0.768	0.732	2.7e-68
FB|FBgn0029714	252	CG3527 [Drosophila melanogaste	0.898	0.734	0.683	4.4e-68
UNIPROTKB|F1N532	244	EMG1 "Uncharacterized protein"	0.888	0.75	0.710	3.1e-67
UNIPROTKB|E2RKH8	244	EMG1 "Uncharacterized protein"	0.888	0.75	0.715	3.1e-67
UNIPROTKB|I3LPQ4	244	EMG1 "Uncharacterized protein"	0.888	0.75	0.710	5.1e-67
UNIPROTKB|Q92979	244	EMG1 "Ribosomal RNA small subu	0.888	0.75	0.704	6.5e-67
RGD|1307665	244	Emg1 "EMG1 nucleolar protein h	0.888	0.75	0.699	1.1e-66
MGI|MGI:1315195	244	Emg1 "EMG1 nucleolar protein h	0.888	0.75	0.699	1.3e-66
ZFIN|ZDB-GENE-060421-2909	238	zgc:136360 "zgc:136360" [Danio	0.888	0.768	0.683	7.4e-66
WB|WBGene00012652	231	Y39A1A.14 [Caenorhabditis eleg	0.970	0.865	0.509	4.4e-52

UNIPROTKB|F1N832 EMG1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 693 (249.0 bits), Expect = 2.7e-68, P = 2.7e-68
 Identities = 134/183 (73%), Positives = 149/183 (81%)

Query:    23 FELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEV 82
             FELLNCD H  LL + GR+PG  RPDI HQ LLMLMDSPLNRAGLLQVYIHT+KNVLIEV
Sbjct:    55 FELLNCDKHKALLLRSGRDPGEVRPDITHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEV 114

Query:    83 NPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSFSS 142
             NPQTRIPRTF RF GLMVQLLHK SVRA+D   KLLKVIKNP++ HLPVG  KIGTSF+ 
Sbjct:   115 NPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHLPVGCMKIGTSFAV 174

Query:   143 SKLTKPADLVPADEPIVIVIGAMAHGQVDTDYTEGNISISNFPLSAALTCTKLCSAFEEA 202
               +T   +LVP  EP+ IV+GA AHG V+ DYTE  ISISN+PLSAALTC K+ +AFEEA
Sbjct:   175 PNVTDLRELVPTAEPVTIVVGAFAHGSVNVDYTEKMISISNYPLSAALTCAKITTAFEEA 234

Query:   203 WGV 205
             WGV
Sbjct:   235 WGV 237

GO:0008168 "methyltransferase activity" evidence=IEA

FB|FBgn0029714 CG3527 [Drosophila melanogaster (taxid:7227)]

 Score = 691 (248.3 bits), Expect = 4.4e-68, P = 4.4e-68
 Identities = 132/193 (68%), Positives = 153/193 (79%)

Query:    21 NAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLI 80
             N FELLNCDDH  +++K+ R+PGSCRPDI HQCLLML DSPLNRAGLLQV++ TE NVLI
Sbjct:    59 NTFELLNCDDHAGIMRKNQRDPGSCRPDITHQCLLMLFDSPLNRAGLLQVFVRTEHNVLI 118

Query:    81 EVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSF 140
             E+NPQTRIPRTFKRFAGLMVQLLHKF +RA+DS+ +L+ VIKNPIT H+PVG +K   SF
Sbjct:   119 EINPQTRIPRTFKRFAGLMVQLLHKFQIRANDSSRRLMSVIKNPITDHVPVGCKKYAMSF 178

Query:   141 SSSKLTKPADLVPA--------DEPIVIVIGAMAHGQVDTDYTEGNISISNFPLSAALTC 192
             S   L    DLVP         DEP+VIVIGA AHG + TDYTE   SISN+PLSAA+ C
Sbjct:   179 SGKLLPNCRDLVPHGDETSASYDEPVVIVIGAFAHGVLKTDYTEELFSISNYPLSAAIAC 238

Query:   193 TKLCSAFEEAWGV 205
             +K+CSAFEE WGV
Sbjct:   239 SKICSAFEEVWGV 251

GO:0006364 "rRNA processing" evidence=NAS

GO:0042274 "ribosomal small subunit biogenesis" evidence=NAS

GO:0005730 "nucleolus" evidence=NAS

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|F1N532 EMG1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
 Identities = 130/183 (71%), Positives = 150/183 (81%)

Query:    23 FELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEV 82
             +ELLNCD H  +L K+GR+PG  RPDI HQ LLMLMDSPLNRAGLLQVYIHT+KNVLIEV
Sbjct:    61 YELLNCDKHKSMLLKNGRDPGEVRPDIAHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEV 120

Query:    83 NPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSFSS 142
             NPQTRIPRTF RF GLMVQLLHK SVRA+D   KLLKVIKNP++ H PVG  KIGTSFS 
Sbjct:   121 NPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKIGTSFSV 180

Query:   143 SKLTKPADLVPADEPIVIVIGAMAHGQVDTDYTEGNISISNFPLSAALTCTKLCSAFEEA 202
               ++   +L P+ +PIV V+GA AHG+VD +YTE  +SISN+PLSAALTC K+ +AFEEA
Sbjct:   181 PVVSDVRELAPSSDPIVFVVGAFAHGKVDVEYTEKMVSISNYPLSAALTCAKVTTAFEEA 240

Query:   203 WGV 205
             WGV
Sbjct:   241 WGV 243

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|E2RKH8 EMG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
 Identities = 131/183 (71%), Positives = 149/183 (81%)

Query:    23 FELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEV 82
             +ELLNCD H  +L K+GR+PG  RPDI HQ LLMLMDSPLNRAGLLQVYIHT+KNVLIEV
Sbjct:    61 YELLNCDKHKSVLLKNGRDPGEVRPDIAHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEV 120

Query:    83 NPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSFSS 142
             NPQTRIPRTF RF GLMVQLLHK SVRA+D   KLLKVIKNP++ H PVG  KIGTSFS 
Sbjct:   121 NPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKIGTSFSI 180

Query:   143 SKLTKPADLVPADEPIVIVIGAMAHGQVDTDYTEGNISISNFPLSAALTCTKLCSAFEEA 202
               ++   +LVP+ +PIV V+GA AHGQV  +YTE  +SISN+PLSAALTC KL +AFEE 
Sbjct:   181 PVVSDVRELVPSSDPIVFVVGAFAHGQVSVEYTEKMVSISNYPLSAALTCAKLTTAFEEV 240

Query:   203 WGV 205
             WGV
Sbjct:   241 WGV 243

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|I3LPQ4 EMG1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
 Identities = 130/183 (71%), Positives = 149/183 (81%)

Query:    23 FELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEV 82
             +ELLNCD H  +L K+GR+PG  RPDI HQ LLMLMDSPLNRAGLLQVYIHT+KNVLIEV
Sbjct:    61 YELLNCDKHKSMLLKNGRDPGEVRPDIAHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEV 120

Query:    83 NPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSFSS 142
             NPQTRIPRTF RF GLMVQLLHK SVRA+D   KLLKVIKNP++ H PVG  KIGTSFS 
Sbjct:   121 NPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKIGTSFSI 180

Query:   143 SKLTKPADLVPADEPIVIVIGAMAHGQVDTDYTEGNISISNFPLSAALTCTKLCSAFEEA 202
               ++   +LVP+ +P+V V+GA AHGQVD +YTE  +SISN+PLSAALTC KL +AFEE 
Sbjct:   181 PVVSDVRELVPSSDPVVFVVGAFAHGQVDVEYTEKMVSISNYPLSAALTCAKLTTAFEEV 240

Query:   203 WGV 205
             W V
Sbjct:   241 WRV 243

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|Q92979 EMG1 "Ribosomal RNA small subunit methyltransferase NEP1" [Homo sapiens (taxid:9606)]

 Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
 Identities = 129/183 (70%), Positives = 149/183 (81%)

Query:    23 FELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEV 82
             +ELLNCD H  +L K+GR+PG  RPDI HQ LLMLMDSPLNRAGLLQVYIHT+KNVLIEV
Sbjct:    61 YELLNCDKHKSILLKNGRDPGEARPDITHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEV 120

Query:    83 NPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSFSS 142
             NPQTRIPRTF RF GLMVQLLHK SVRA+D   KLLKVIKNP++ H PVG  K+GTSFS 
Sbjct:   121 NPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKVGTSFSI 180

Query:   143 SKLTKPADLVPADEPIVIVIGAMAHGQVDTDYTEGNISISNFPLSAALTCTKLCSAFEEA 202
               ++   +LVP+ +PIV V+GA AHG+V  +YTE  +SISN+PLSAALTC KL +AFEE 
Sbjct:   181 PVVSDVRELVPSSDPIVFVVGAFAHGKVSVEYTEKMVSISNYPLSAALTCAKLTTAFEEV 240

Query:   203 WGV 205
             WGV
Sbjct:   241 WGV 243

GO:0019843 "rRNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006364 "rRNA processing" evidence=ISS

GO:0042274 "ribosomal small subunit biogenesis" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

GO:0070037 "rRNA (pseudouridine) methyltransferase activity" evidence=IDA

GO:0005634 "nucleus" evidence=ISS

RGD|1307665 Emg1 "EMG1 nucleolar protein homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
 Identities = 128/183 (69%), Positives = 149/183 (81%)

Query:    23 FELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEV 82
             +ELLNCD H  +L K+GR+PG  RPDI HQ LLMLMDSPLNRAGLLQVYIHT+KNVLIEV
Sbjct:    61 YELLNCDKHKSMLLKNGRDPGEVRPDITHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEV 120

Query:    83 NPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSFSS 142
             NPQTRIPRTF RF GLMVQLLHK SVRA+D   KLLKVIKNP++ H PVG  KIGTSFS 
Sbjct:   121 NPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKIGTSFSV 180

Query:   143 SKLTKPADLVPADEPIVIVIGAMAHGQVDTDYTEGNISISNFPLSAALTCTKLCSAFEEA 202
               ++   +LVP+ +P+V V+GA AHG+V  +YTE  +SISN+PLSAALTC K+ +AFEE 
Sbjct:   181 EDISDIRELVPSSDPVVFVVGAFAHGKVSVEYTEKMVSISNYPLSAALTCAKVTTAFEEV 240

Query:   203 WGV 205
             WGV
Sbjct:   241 WGV 243

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0070037 "rRNA (pseudouridine) methyltransferase activity" evidence=ISO

MGI|MGI:1315195 Emg1 "EMG1 nucleolar protein homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
 Identities = 128/183 (69%), Positives = 149/183 (81%)

Query:    23 FELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEV 82
             +ELLNCD H  +L K+GR+PG  RPDI HQ LLMLMDSPLNRAGLLQVYIHT+KNVLIEV
Sbjct:    61 YELLNCDRHKSMLLKNGRDPGEVRPDITHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEV 120

Query:    83 NPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSFSS 142
             NPQTRIPRTF RF GLMVQLLHK SVRA+D   KLLKVIKNP++ H PVG  KIGTSFS 
Sbjct:   121 NPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKIGTSFSV 180

Query:   143 SKLTKPADLVPADEPIVIVIGAMAHGQVDTDYTEGNISISNFPLSAALTCTKLCSAFEEA 202
               ++   +LVP+ +P+V V+GA AHG+V  +YTE  +SISN+PLSAALTC K+ +AFEE 
Sbjct:   181 EDISDIRELVPSSDPVVFVVGAFAHGKVSVEYTEKMVSISNYPLSAALTCAKVTTAFEEV 240

Query:   203 WGV 205
             WGV
Sbjct:   241 WGV 243

GO:0003723 "RNA binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0070037 "rRNA (pseudouridine) methyltransferase activity" evidence=ISO

ZFIN|ZDB-GENE-060421-2909 zgc:136360 "zgc:136360" [Danio rerio (taxid:7955)]

 Score = 670 (240.9 bits), Expect = 7.4e-66, P = 7.4e-66
 Identities = 125/183 (68%), Positives = 143/183 (78%)

Query:    23 FELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEV 82
             FELLNCD H  ++ K GR+PG  RPDI HQCLLML+DSPLNRAGLLQVYIHTEKNVLIE+
Sbjct:    55 FELLNCDQHKSMIIKSGRDPGKIRPDIAHQCLLMLLDSPLNRAGLLQVYIHTEKNVLIEI 114

Query:    83 NPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSFSS 142
             NPQTRIPRTF RF GLMVQLLHK SVRA+D   +LL++IKNP++ HLP G  +  TSF +
Sbjct:   115 NPQTRIPRTFARFCGLMVQLLHKLSVRAADGPQRLLRLIKNPVSDHLPPGCPRFSTSFKA 174

Query:   143 SKLTKPADLVPADEPIVIVIGAMAHGQVDTDYTEGNISISNFPLSAALTCTKLCSAFEEA 202
                  P  +VP D P  IVIGA AHG V+ DYTE  +SISN+PLSAAL C K+CSAFEE 
Sbjct:   175 GDAVCPRTIVPDDGPAAIVIGAFAHGAVNVDYTEKTVSISNYPLSAALACAKICSAFEEV 234

Query:   203 WGV 205
             WGV
Sbjct:   235 WGV 237

GO:0008168 "methyltransferase activity" evidence=IEA

WB|WBGene00012652 Y39A1A.14 [Caenorhabditis elegans (taxid:6239)]

 Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
 Identities = 103/202 (50%), Positives = 140/202 (69%)

Query:     6 YKVAQNYFIFNFQTKNAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRA 65
             Y V +   +   +    + +L+ D H   L+K  ++P   RPDI+HQCLL L+DSPLNRA
Sbjct:    29 YVVLEGCSLETAKVGGEYAILSSDKHANFLRKQKKDPADYRPDILHQCLLNLLDSPLNRA 88

Query:    66 GLLQVYIHTEKNVLIEVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPI 125
             G L+V+  T KNVL++V+PQ RIPRTF RF GLMVQLLHK S+RA+++  KL+ V+KNP+
Sbjct:    89 GKLRVFFRTSKNVLVDVSPQCRIPRTFDRFCGLMVQLLHKLSIRAAETTQKLMSVVKNPV 148

Query:   126 TQHLPVGVRKIGTSFSSSKLTKPADLV-P-ADEPIVIVIGAMAHGQVDTDYTEGNISISN 183
             + HLPVG RK+  SF+  +LT    LV P  DEP+V++IG +A G++  DY +    ISN
Sbjct:   149 SNHLPVGSRKMLMSFNVPELTMANKLVAPETDEPLVLIIGGIARGKIVVDYNDSETKISN 208

Query:   184 FPLSAALTCTKLCSAFEEAWGV 205
             +PLSAALTC K+ S  EE WG+
Sbjct:   209 YPLSAALTCAKVTSGLEEIWGI 230

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B1YD95	NEP1_PYRNV	2, ., 1, ., 1, ., -	0.3414	0.7378	0.6877	yes	N/A
A3DNG9	NEP1_STAMF	2, ., 1, ., 1, ., -	0.3541	0.8495	0.7608	yes	N/A
Q06287	NEP1_YEAST	2, ., 1, ., 1, ., -	0.5343	0.8980	0.7341	yes	N/A
O50087	NEP1_PYRHO	2, ., 1, ., 1, ., -	0.3236	0.7864	0.7074	yes	N/A
A1RVH0	NEP1_PYRIL	2, ., 1, ., 1, ., -	0.3154	0.7475	0.6968	yes	N/A
Q10107	MRA1_SCHPO	2, ., 1, ., 1, ., -	0.5454	0.8883	0.5097	yes	N/A
Q96YP4	NEP1_SULTO	2, ., 1, ., 1, ., -	0.3333	0.7184	0.6757	yes	N/A
Q57977	NEP1_METJA	2, ., 1, ., 1, ., -	0.2896	0.8106	0.8146	yes	N/A
Q96UP2	NEP1_CANGA	2, ., 1, ., 1, ., -	0.5380	0.8737	0.7860	yes	N/A
C6A116	NEP1_THESM	2, ., 1, ., 1, ., -	0.3333	0.8252	0.7727	yes	N/A
B6YTM6	NEP1_THEON	2, ., 1, ., 1, ., -	0.3186	0.8300	0.7808	yes	N/A
Q5JI44	NEP1_PYRKO	2, ., 1, ., 1, ., -	0.3101	0.8543	0.8	yes	N/A
O35130	NEP1_MOUSE	2, ., 1, ., 1, ., -	0.6918	0.8980	0.7581	yes	N/A
Q9W4J5	NEP1_DROME	2, ., 1, ., 1, ., -	0.6700	0.9174	0.75	yes	N/A
Q9XX15	NEP1_CAEEL	2, ., 1, ., 1, ., -	0.5049	0.9708	0.8658	yes	N/A
Q92979	NEP1_HUMAN	2, ., 1, ., 1, ., -	0.7049	0.8883	0.75	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	206
pfam03587	200	pfam03587, EMG1, EMG1/NEP1 methyltransferase	6e-88
COG1756	223	COG1756, Mra1, Uncharacterized conserved protein [	7e-59
PRK04171	222	PRK04171, PRK04171, ribosome biogenesis protein; P	4e-37

>gnl|CDD|217628 pfam03587, EMG1, EMG1/NEP1 methyltransferase

 Score =  257 bits (658), Expect = 6e-88
 Identities = 96/187 (51%), Positives = 122/187 (65%), Gaps = 8/187 (4%)

Query: 20  KNAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVL 79
           K  +ELL+ DDH   +KK  ++    RPDIVHQCLLML+DSPLN+AGLL+VYIHT   VL
Sbjct: 16  KPGYELLDSDDHYAAMKKLKKKEKRGRPDIVHQCLLMLLDSPLNKAGLLRVYIHTRDGVL 75

Query: 80  IEVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTS 139
           IEV+P+TR+PR + RF GLM QLL K  V A      LLKV+KNP+T  LP G +KI  S
Sbjct: 76  IEVSPETRVPRNYNRFVGLMEQLLKKGRVPAEGGE-PLLKVVKNPLTDLLPEGAKKILLS 134

Query: 140 FSSSKLTKPADLVPA--DEPIVIVIGAMAHGQ--VDTDYTE--GNISISNFPLSAALTCT 193
               K   P +LV    ++P+  VIGA  HG    + DY +   + SISN+PLSA   C+
Sbjct: 135 EKGEK-VSPKELVSELLNKPVAFVIGAFPHGDFSDEVDYKKADESYSISNYPLSAWTVCS 193

Query: 194 KLCSAFE 200
           ++C AFE
Sbjct: 194 RICHAFE 200

Members of this family are essential for 40S ribosomal biogenesis. The structure of EMG1 has revealed that it is a novel member of the superfamily of alpha/beta knot fold methyltransferases. Length = 200

>gnl|CDD|224670 COG1756, Mra1, Uncharacterized conserved protein [Function unknown]

 Score =  184 bits (468), Expect = 7e-59
 Identities = 78/185 (42%), Positives = 106/185 (57%), Gaps = 9/185 (4%)

Query: 25  LLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEVNP 84
           L +   H  + K + RE    RPDIVHQCLL L+DSPLN+ G L+VYIHT  + +IEVNP
Sbjct: 41  LDSSYHHTAMKKLEDRERRG-RPDIVHQCLLTLLDSPLNKEGKLRVYIHTRNDYVIEVNP 99

Query: 85  QTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLP-VGVRKIGTSFS-S 142
           +TR+PR + RF GLM QLL K  +  S+    LL+V KNP+T  LP      I       
Sbjct: 100 ETRLPRNYNRFIGLMEQLLKKGRIP-SNGGETLLEVEKNPLTDLLPENNKVTI--LLHEK 156

Query: 143 SKLTKPADLVPADEP-IVIVIGAMAHG--QVDTDYTEGNISISNFPLSAALTCTKLCSAF 199
            +L  P +L+      I ++IG   HG  + +T++     SI + PLSA   C+K+  A+
Sbjct: 157 GELIPPKELISLLLKGIAVIIGGFPHGDFREETEFVAEKYSIYDEPLSAWSVCSKIVYAY 216

Query: 200 EEAWG 204
           E A G
Sbjct: 217 ERALG 221

Length = 223

>gnl|CDD|235238 PRK04171, PRK04171, ribosome biogenesis protein; Provisional

 Score =  128 bits (324), Expect = 4e-37
 Identities = 61/167 (36%), Positives = 88/167 (52%), Gaps = 14/167 (8%)

Query: 46  RPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEVNPQTRIPRTFKRFAGLMVQLLHK 105
           RPDIVH  LL+ +DSPLN+ G L+VYIHT  + +I VNP+TR+P+ + RF GLM QLL +
Sbjct: 60  RPDIVHISLLVALDSPLNKEGKLRVYIHTRDDKVIYVNPETRLPKNYNRFVGLMEQLLKE 119

Query: 106 FSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTS----FSSS-KLTKPADLVPADEPIVI 160
             V  +    + L  I+N   + L   + +IG       S   +L KP +L   +E I +
Sbjct: 120 GRVPPNG---EPLLEIENKSLEEL---LEEIGPDRIILLSEKGELVKPKELGKENENIAV 173

Query: 161 VIGAMAHGQVDTDY---TEGNISISNFPLSAALTCTKLCSAFEEAWG 204
            IG   HG          +   SI   PL+A     ++ +A+E   G
Sbjct: 174 GIGGFPHGDFSEKVLELAKKKYSIYGEPLTAWTVVCRVIAAYERLLG 220

Length = 222

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	206
3oii_A	253	Crystal Structure Of Saccharomyces Cerevisiae Nep1E		2e-55
2v3k_A	258	The Yeast Ribosome Synthesis Factor Emg1 Alpha Beta		3e-54
3bbe_A	205	M. Jannaschii Nep1 Length = 205		6e-16
3bbd_A	205	M. Jannaschii Nep1 Complexed With S-Adenosyl-Homocy		3e-15
3o7b_A	244	Crystal Structure Of Archaeoglobus Fulgidus Nep1 Bo		1e-13

>pdb|3OII|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nep1EMG1 BOUND TO S- Adenosylhomocysteine Length = 253

Iteration: 1
 Score =  211 bits (538), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 101/189 (53%), Positives = 133/189 (70%), Gaps = 4/189 (2%)
Query: 21  NAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLI 80
           + + LLNCDDH  LLKK GR+    RPDI HQCLL L+DSP+N+AG LQVYI T + +LI
Sbjct: 64  DKYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSRGILI 123
Query: 81  EVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSF 140
           EVNP  RIPRTFKRF+GLMVQLLHK S+R+ +S  KLLKVIKNPIT HLP   RK+  SF
Sbjct: 124 EVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSF 183
Query: 141 SSS--KLTKPADLVPADEPIVIVIGAMAHGQVD--TDYTEGNISISNFPLSAALTCTKLC 196
            +   ++    + +  DE I + +GAMA G+ +   +Y +  + +SN+PLSA++ C+K C
Sbjct: 184 DAPVIRVQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKFC 243
Query: 197 SAFEEAWGV 205
              E+AW +
Sbjct: 244 HGAEDAWNI 252

>pdb|2V3K|A Chain A, The Yeast Ribosome Synthesis Factor Emg1 Alpha Beta Knot Fold Methyltransferase Length = 258

Iteration: 1
 Score =  207 bits (527), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 99/189 (52%), Positives = 131/189 (69%), Gaps = 4/189 (2%)
Query: 21  NAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLI 80
           + + LLNCDDH  LLKK GR+    RPDI HQCLL L+DSP+N+AG LQVYI T + +LI
Sbjct: 63  DKYVLLNCDDHQGLLKKXGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSRGILI 122
Query: 81  EVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSF 140
           EVNP  RIPRTFKRF+GL VQLLHK S+R+ +S  KLLKVIKNPIT HLP   RK+  SF
Sbjct: 123 EVNPTVRIPRTFKRFSGLXVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSF 182
Query: 141 SSS--KLTKPADLVPADEPIVIVIGAMAHGQVD--TDYTEGNISISNFPLSAALTCTKLC 196
            +   ++    + +  DE I + +GA A G+ +   +Y +  + +SN+PLSA++ C+K C
Sbjct: 183 DAPVIRVQDYIEKLDDDESICVFVGAXARGKDNFADEYVDEKVGLSNYPLSASVACSKFC 242
Query: 197 SAFEEAWGV 205
              E+AW +
Sbjct: 243 HGAEDAWNI 251

>pdb|3BBE|A Chain A, M. Jannaschii Nep1 Length = 205

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 93/183 (50%), Gaps = 16/183 (8%)
Query: 23  FELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEV 82
           +++L+ + H   ++K   +    RPDI+H  LL ++DSP+N    L +YIHT  + ++++
Sbjct: 31  YDILDSNYHYKAMEKLKDKEMRGRPDIIHISLLNILDSPINHEKKLNIYIHTYDDKVLKI 90
Query: 83  NPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHL-PVGVRKIGTSFS 141
           NP+TR+PR + RF G+M ++L        + N  L+K+ +  +   L  +  +KI     
Sbjct: 91  NPETRLPRNYFRFLGVMEKVL------KGERN-HLIKMEEKTLEDLLNEINAKKIAIMTK 143
Query: 142 SSKLTKPADLVPADEPIVIVIGAMAHGQVDTDYTE-----GNISISNFPLSAALTCTKLC 196
           + KLT P  L   D     +IG   +G++  +  +       ISI N  L A   C  +C
Sbjct: 144 TGKLTHPKLLKEYD---TFIIGGFPYGKLKINKEKVFGDIKEISIYNKGLMAWTVCGIIC 200
Query: 197 SAF 199
            + 
Sbjct: 201 YSL 203

>pdb|3BBD|A Chain A, M. Jannaschii Nep1 Complexed With S-Adenosyl-Homocysteine Length = 205

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 87/182 (47%), Gaps = 14/182 (7%)
Query: 23  FELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEV 82
           +++L+ + H    +K   +    RPDI+H  LL ++DSP+N    L +YIHT  + ++++
Sbjct: 31  YDILDSNYHYKAXEKLKDKEXRGRPDIIHISLLNILDSPINHEKKLNIYIHTYDDKVLKI 90
Query: 83  NPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSFSS 142
           NP+TR+PR + RF G+  ++L            K L+ + N I        +KI     +
Sbjct: 91  NPETRLPRNYFRFLGVXEKVLKGERNHLIKXEEKTLEDLLNEI------NAKKIAIXTKT 144
Query: 143 SKLTKPADLVPADEPIVIVIGAMAHGQVDTDYTE-----GNISISNFPLSAALTCTKLCS 197
            KLT P  L   D     +IG   +G++  +  +       ISI N  L A   C  +C 
Sbjct: 145 GKLTHPKLLKEYD---TFIIGGFPYGKLKINKEKVFGDIKEISIYNKGLXAWTVCGIICY 201
Query: 198 AF 199
           + 
Sbjct: 202 SL 203

>pdb|3O7B|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Nep1 Bound To S- Adenosylhomocysteine Length = 244

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 68/125 (54%), Gaps = 13/125 (10%)
Query: 46  RPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEVNPQTRIPRTFKRFAGLMVQLLHK 105
           RPDIVHQCLL+L+DSPL      +VY+HT    +I VN +TR+PR + RF GLM +L  +
Sbjct: 86  RPDIVHQCLLLLLDSPLRD---FEVYVHTLNGEIIWVNRETRLPRNYNRFVGLMEKLFEE 142
Query: 106 FSVRASDSNIKLLKVI--KNPITQHLPVGVRKIGTSFSSSKLTKPADLVPADEPIVIVIG 163
             + A D+ +   K +  ++ +     +  R+ G  F  S+L         D  + + IG
Sbjct: 143 RRITAGDTTLIEFKDVGLRDIVRGRDVLLFREKGGRFEFSELL--------DGDVAVCIG 194
Query: 164 AMAHG 168
           A  HG
Sbjct: 195 AFPHG 199

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	206
3oii_A	253	Essential for mitotic growth 1; EMG1, scnep1, spou	1e-87
3o7b_A	244	Ribosome biogenesis NEP1 RNA methyltransferase; sp	1e-76
3bbd_A	205	Ribosome biogenesis protein NEP1-like; methyltrans	3e-74
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>3oii_A Essential for mitotic growth 1; EMG1, scnep1, spout, ribosome biogenesis, methyltransferase, processing, ribosomal protein; HET: SAH; 1.85A {Saccharomyces cerevisiae} PDB: 3oij_A* 3oin_A* 2v3j_A 2v3k_A* Length = 253

 Score =  257 bits (658), Expect = 1e-87
 Identities = 101/190 (53%), Positives = 132/190 (69%), Gaps = 4/190 (2%)

Query: 20  KNAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVL 79
            + + LLNCDDH  LLKK GR+    RPDI HQCLL L+DSP+N+AG LQVYI T + +L
Sbjct: 63  GDKYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSRGIL 122

Query: 80  IEVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTS 139
           IEVNP  RIPRTFKRF+GLMVQLLHK S+R+ +S  KLLKVIKNPIT HLP   RK+  S
Sbjct: 123 IEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLS 182

Query: 140 FSSSKLTKP--ADLVPADEPIVIVIGAMAHGQVD--TDYTEGNISISNFPLSAALTCTKL 195
           F +  +      + +  DE I + +GAMA G+ +   +Y +  + +SN+PLSA++ C+K 
Sbjct: 183 FDAPVIRVQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKF 242

Query: 196 CSAFEEAWGV 205
           C   E+AW +
Sbjct: 243 CHGAEDAWNI 252

>3o7b_A Ribosome biogenesis NEP1 RNA methyltransferase; spout, rRNA processi transferase; HET: TYR SAH; 1.45A {Archaeoglobus fulgidus} Length = 244

 Score =  229 bits (585), Expect = 1e-76
 Identities = 49/187 (26%), Positives = 83/187 (44%), Gaps = 14/187 (7%)

Query: 23  FELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEV 82
             LL+   H   +K         RPDIVHQCLL+L+DSPL      +VY+HT    +I V
Sbjct: 63  KILLDDSKHHTAMKSLEFREKRGRPDIVHQCLLLLLDSPLRD---FEVYVHTLNGEIIWV 119

Query: 83  NPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSFSS 142
           N +TR+PR + RF GLM +L  +  + A D+   L++     +   +  G   +      
Sbjct: 120 NRETRLPRNYNRFVGLMEKLFEERRITAGDT--TLIEFKDVGLRDIVR-GRDVLLFRE-K 175

Query: 143 SKLTKPADLVPADEPIVIVIGAMAHGQVDTDYTE-----GNISISNFPLSAALTCTKLCS 197
               + ++L+  D  + + IGA  HG    +          +S+     ++    +++  
Sbjct: 176 GGRFEFSELL--DGDVAVCIGAFPHGDFFEETLRELGEFKEVSLGTESYTSLYVTSRVLC 233

Query: 198 AFEEAWG 204
            +E    
Sbjct: 234 EYERVRA 240

>3bbd_A Ribosome biogenesis protein NEP1-like; methyltransferase, S-adenosyl-methionin adenosyl-homocysteine, rRNA processing; HET: MSE SAH; 2.15A {Methanocaldococcus jannaschii} SCOP: c.116.1.6 PDB: 3bbe_A 3bbh_A* Length = 205

 Score =  222 bits (566), Expect = 3e-74
 Identities = 53/186 (28%), Positives = 89/186 (47%), Gaps = 14/186 (7%)

Query: 20  KNAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVL 79
              +++L+ + H   ++K   +    RPDI+H  LL ++DSP+N    L +YIHT  + +
Sbjct: 28  VYKYDILDSNYHYKAMEKLKDKEMRGRPDIIHISLLNILDSPINHEKKLNIYIHTYDDKV 87

Query: 80  IEVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTS 139
           +++NP+TR+PR + RF G+M ++L            K L+ + N I        +KI   
Sbjct: 88  LKINPETRLPRNYFRFLGVMEKVLKGERNHLIKMEEKTLEDLLNEI------NAKKIAIM 141

Query: 140 FSSSKLTKPADLVPADEPIVIVIGAMAHGQVDTDYTE-----GNISISNFPLSAALTCTK 194
             + KLT P  L    E    +IG   +G++  +  +       ISI N  L A   C  
Sbjct: 142 TKTGKLTHPKLL---KEYDTFIIGGFPYGKLKINKEKVFGDIKEISIYNKGLMAWTVCGI 198

Query: 195 LCSAFE 200
           +C +  
Sbjct: 199 ICYSLS 204

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 3e-04
 Identities = 36/215 (16%), Positives = 62/215 (28%), Gaps = 67/215 (31%)

Query: 1   MSG-GHYK------VAQNYFIFNFQTKNAFELL-----NCDDHGYLLKK----------- 37
           + G G  K      V  +Y     Q K  F++      NC+    +L+            
Sbjct: 158 VLGSG--KTWVALDVCLSY---KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 38  -----DGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEVNPQTRIPRTF 92
                D       R   +   L  L+ S      LL         VL+ V    +  + +
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL---------VLLNV----QNAKAW 259

Query: 93  KRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIG-TSFSSSKL------ 145
             F  L  ++L    +      +     +    T H+ +    +  T      L      
Sbjct: 260 NAF-NLSCKIL----LTTRFKQV--TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 146 TKPADLVPADE----PIVI-VIGAMAHGQVDT-DY 174
            +P DL P +     P  + +I       + T D 
Sbjct: 313 CRPQDL-PREVLTTNPRRLSIIAESIRDGLATWDN 346

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	206
3oii_A	253	Essential for mitotic growth 1; EMG1, scnep1, spou	100.0
3bbd_A	205	Ribosome biogenesis protein NEP1-like; methyltrans	100.0
3o7b_A	244	Ribosome biogenesis NEP1 RNA methyltransferase; sp	100.0
2qmm_A	197	UPF0217 protein AF_1056; alpha/beta knot, SAM, str	99.96
3aia_A	211	UPF0217 protein MJ1640; DUF358, rRNA methyltransfe	99.94
2qwv_A	208	UPF0217 protein VC_A1059; unknown function, struct	96.88
4fak_A	163	Ribosomal RNA large subunit methyltransferase H; a	96.29
1o6d_A	163	Hypothetical UPF0247 protein TM0844; structural ge	95.58
1to0_A	167	Hypothetical UPF0247 protein YYDA; structural geno	95.08
1ns5_A	155	Hypothetical protein YBEA; structural genomics, PS	94.4

>3oii_A Essential for mitotic growth 1; EMG1, scnep1, spout, ribosome biogenesis, methyltransferase, processing, ribosomal protein; HET: SAH; 1.85A {Saccharomyces cerevisiae} PDB: 3oij_A* 3oin_A* 2v3j_A 2v3k_A*

Probab=100.00  E-value=1.3e-83  Score=559.59  Aligned_cols=202  Identities=51%  Similarity=0.875  Sum_probs=190.6

Q ss_pred             CceEEEeccCceeeEee------cCceEeeCchhhHHHHHhCCCCCCCCCCChHHHHHHHhhCchhhcCCcceEEEEecC
Q psy14698          3 GGHYKVAQNYFIFNFQT------KNAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEK   76 (206)
Q Consensus         3 ~~~~~~l~~a~le~~k~------~~~~~LLd~~~H~~~m~kl~~~~~~gRPDIvH~~LL~lldSpLNk~G~L~VyIhT~~   76 (206)
                      ...+|||++|+||++|.      +++|+|||+++||++|++++++++||||||||||||++|||||||+|+|||||||.|
T Consensus        40 ~rlivVL~~a~LE~v~~~~~~r~~~~~~LLd~~~H~~~m~k~~~~~~~~RPDIvHq~LL~lldSpLNk~G~L~VYIhT~~  119 (253)
T 3oii_A           40 KRMIVVLAMASLETHKISSNGPGGDKYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSR  119 (253)
T ss_dssp             CCEEEEEEEECCCEECC---------CEECCTTTCHHHHHHTTCCGGGCCHHHHHHHHHHHHTSHHHHTTCEEEEEEETT
T ss_pred             ceEEEEeCCCccceeeccccccCCCCeEeechHHHHHHHHHcCCchhhcCCCHHHHHHHHHhcChhhhcCceEEEEEecC
Confidence            35899999999999996      578999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEcCCCCCCCChhHHHHHHHHHhhhCceecCCCCccceEEEeccccccccCCCeEEEEeccCCcccCCCccCC---
Q psy14698         77 NVLIEVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSFSSSKLTKPADLVP---  153 (206)
Q Consensus        77 ~~lI~V~P~~RiPRty~rF~gLM~qLL~~~~V~~~~~~~~Llkv~~~~l~~~lp~~~~~i~ls~~g~~~v~~~~~~~---  153 (206)
                      |++|+|||++||||||+||+|||+|||++++|++.+++++||++++|||++|||+|+++|+||++|+ .+++.++++   
T Consensus       120 ~~lIeV~P~~RiPRty~rF~GLM~qLL~k~~I~~~~~~~~LLkvikn~l~d~Lp~~~~kI~ls~~g~-~v~~~~~~~~l~  198 (253)
T 3oii_A          120 GILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFDAP-VIRVQDYIEKLD  198 (253)
T ss_dssp             SCEEEECTTCCCCSSHHHHHHHHHHHHHHSEEEETTEEEEEEEEECSCGGGTSCSSEEEEEECTTSC-BCCHHHHHHTSC
T ss_pred             CEEEEECCCCCCCCCHHHHHHHHHHHHhcCcccCCCCCCeeEEEEcCCHHHhCCCCCeEEEEccCCC-ccCHHHHHHhcc
Confidence            9999999999999999999999999999999999877789999999999999999999999999997 889988764   


Q ss_pred             CCCCeEEEECccccC--CCCCCCcceeEEecCCCCCHHHHHHHHHHHHHHHhCC
Q psy14698        154 ADEPIVIVIGAMAHG--QVDTDYTEGNISISNFPLSAALTCTKLCSAFEEAWGV  205 (206)
Q Consensus       154 ~~~~~~~~IGafp~G--d~~~~~~~~~isIs~~~Lsa~~v~~ri~~~~E~~~gi  205 (206)
                      ++.++||+|||||||  +|+++|.++.||||+||||||+||++||++||++|||
T Consensus       199 ~~~~i~vvVGafahG~~~f~~~~~~e~iSIs~ypLsa~~~c~kic~a~E~~w~i  252 (253)
T 3oii_A          199 DDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKFCHGAEDAWNI  252 (253)
T ss_dssp             TTCEEEEEEECSSSCCSCTTTTTCSEEEBSCSSCCCHHHHHHHHHHHHHHHTTC
T ss_pred             cCCCeEEEEeeeCCCCCcccchhcceeEEEeCCChhHHHHHHHHHHHHHHHhCc
Confidence            346899999999999  6888999999999999999999999999999999997

>3bbd_A Ribosome biogenesis protein NEP1-like; methyltransferase, S-adenosyl-methionin adenosyl-homocysteine, rRNA processing; HET: MSE SAH; 2.15A {Methanocaldococcus jannaschii} SCOP: c.116.1.6 PDB: 3bbe_A 3bbh_A*

Probab=100.00  E-value=1.1e-78  Score=516.42  Aligned_cols=186  Identities=26%  Similarity=0.387  Sum_probs=177.6

Q ss_pred             eEEEeccCceeeE--------eecC--ceEeeCchhhHHHHHhCCCCCCCCCCChHHHHHHHhhCchhhcCCcceEEEEe
Q psy14698          5 HYKVAQNYFIFNF--------QTKN--AFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHT   74 (206)
Q Consensus         5 ~~~~l~~a~le~~--------k~~~--~~~LLd~~~H~~~m~kl~~~~~~gRPDIvH~~LL~lldSpLNk~G~L~VyIhT   74 (206)
                      .+|||++|+||++        |+||  +|+|||+++||++|++++++++||||||||||||++|||||||+|+|||||||
T Consensus         3 l~vvL~~a~LE~vP~ei~~a~k~gk~p~~~LLd~~~H~~~m~k~~~~~~~~RPDIvHq~LL~llDSpLNk~G~L~VYIhT   82 (205)
T 3bbd_A            3 YNIILAKSALELIPEEIKNKIRKSRVYKYDILDSNYHYKAMEKLKDKEMRGRPDIIHISLLNILDSPINHEKKLNIYIHT   82 (205)
T ss_dssp             EEEEEEEESCCBCCGGGGGGCCCBTTBCCSBCCHHHHTTTTTTCTTGGGSSCHHHHHHHHHHHHTSHHHHTTCEEEEEEE
T ss_pred             EEEEECCCccccChhhhhhhHhcCCCCcceecchHHHHHHHHhcccchhccCCcHHHHHHHHHhcChHHHCCCeEEEEEe
Confidence            5799999999999        9988  89999999999999999999999999999999999999999999999999999


Q ss_pred             cCCEEEEEcCCCCCCCChhHHHHHHHHHhhhCceecCCCCccceEEEeccccccccCC--CeEEEEeccCCcccCCCccC
Q psy14698         75 EKNVLIEVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVG--VRKIGTSFSSSKLTKPADLV  152 (206)
Q Consensus        75 ~~~~lI~V~P~~RiPRty~rF~gLM~qLL~~~~V~~~~~~~~Llkv~~~~l~~~lp~~--~~~i~ls~~g~~~v~~~~~~  152 (206)
                      .||++|+|||++||||||+||+|||+|||++++       ++|||++++|+++|+|++  +++|+||++|+ .+++.+++
T Consensus        83 ~~~~lI~V~P~~RiPRty~rF~gLM~qLL~~~~-------~~Llkvik~~l~~~lp~~~~~~~i~ls~~g~-~v~~~~~~  154 (205)
T 3bbd_A           83 YDDKVLKINPETRLPRNYFRFLGVMEKVLKGER-------NHLIKMEEKTLEDLLNEINAKKIAIMTKTGK-LTHPKLLK  154 (205)
T ss_dssp             TTSEEEEECTTCCCCSSHHHHHHHHHHHHTTCC-------CSSEEEEECCHHHHHHHTTCCEEEEEEEEEE-ECCGGGGG
T ss_pred             cCCEEEEECCCCCCCCCHHHHHHHHHHHHHhCc-------hhheEEEcCCHHHhcCCCCCceEEEEcCCCc-ccCHHHHh
Confidence            999999999999999999999999999999997       579999999999999987  79999999997 88999987


Q ss_pred             CCCCCeEEEECccccCCCCCC---Cccee--EEecCCCCCHHHHHHHHHHHHHH
Q psy14698        153 PADEPIVIVIGAMAHGQVDTD---YTEGN--ISISNFPLSAALTCTKLCSAFEE  201 (206)
Q Consensus       153 ~~~~~~~~~IGafp~Gd~~~~---~~~~~--isIs~~~Lsa~~v~~ri~~~~E~  201 (206)
                       .+ . +|+|||||||||+.+   ++++.  ||||+||||||+||+|||++||.
T Consensus       155 -~~-~-~~~IGaf~~G~~~~~~~~~~~~~~~isIs~~pLsa~~v~~ri~~~~~~  205 (205)
T 3bbd_A          155 -EY-D-TFIIGGFPYGKLKINKEKVFGDIKEISIYNKGLMAWTVCGIICYSLSF  205 (205)
T ss_dssp             -GC-S-EEEEECSSSSCCCCCGGGCSSEEEEEESSSSCCCHHHHHHHHHHHHHC
T ss_pred             -CC-C-EEEEccccCCCcchhhhhhhccccEEEEeCCChhHHHHHHHHHHHhhC
Confidence             33 3 999999999999988   89999  99999999999999999999983

>3o7b_A Ribosome biogenesis NEP1 RNA methyltransferase; spout, rRNA processi transferase; HET: TYR SAH; 1.45A {Archaeoglobus fulgidus}

Probab=100.00  E-value=4.6e-76  Score=509.93  Aligned_cols=190  Identities=26%  Similarity=0.370  Sum_probs=178.0

Q ss_pred             ceEEEeccCceeeEe---------------ecCc--eEeeCchhhHHHHHhCCCCCCCCCCChHHHHHHHhhCchhhcCC
Q psy14698          4 GHYKVAQNYFIFNFQ---------------TKNA--FELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAG   66 (206)
Q Consensus         4 ~~~~~l~~a~le~~k---------------~~~~--~~LLd~~~H~~~m~kl~~~~~~gRPDIvH~~LL~lldSpLNk~G   66 (206)
                      +.++||.+|+||+++               .||+  |+|||+++||+||++++++++||||||||||||++|||||||  
T Consensus        27 ~l~vVL~ea~LElvp~ei~~hp~v~~~a~rrgk~p~~~LLd~~~H~~amkkl~~~~krgRPDIvHq~LL~llDSpLNk--  104 (244)
T 3o7b_A           27 GSAFVFLEASLELIPQKIRGHPAVRADAIRRGKRPEKILLDDSKHHTAMKSLEFREKRGRPDIVHQCLLLLLDSPLRD--  104 (244)
T ss_dssp             CEEEEEEEESCCBCCGGGTTSHHHHHHHHHHTSCGGGSBCCHHHHGGGCTTCTTGGGCSCHHHHHHHHHHHHTCSCCS--
T ss_pred             EEEEEECCCcccccchhhccCcchhhhhhhcCCCccccccchHHHHHHHHHCCChhhccCccHHHHHHHHHhhChhhh--
Confidence            467999999999996               3444  999999999999999999999999999999999999999998  


Q ss_pred             cceEEEEecCCEEEEEcCCCCCCCChhHHHHHHHHHhhhCceecCCCCccceEEEeccccccccCCCeEEEEeccCCccc
Q psy14698         67 LLQVYIHTEKNVLIEVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSFSSSKLT  146 (206)
Q Consensus        67 ~L~VyIhT~~~~lI~V~P~~RiPRty~rF~gLM~qLL~~~~V~~~~~~~~Llkv~~~~l~~~lp~~~~~i~ls~~g~~~v  146 (206)
                       |||||||.||+||+|||++||||||+||+|||+|||++++|++.  +++||++++|||++++|++ ++|+||++|+ .+
T Consensus       105 -L~VYIHT~~~~lI~V~P~~RiPRty~RF~GLM~qLL~k~~I~~~--~~~LLkvik~~l~~~lp~~-~~I~lS~~G~-~v  179 (244)
T 3o7b_A          105 -FEVYVHTLNGEIIWVNRETRLPRNYNRFVGLMEKLFEERRITAG--DTTLIEFKDVGLRDIVRGR-DVLLFREKGG-RF  179 (244)
T ss_dssp             -EEEEEEETTSCEEEECTTCCCCSSHHHHHHHHHHHHHHSEEEET--TEEEEEEESSCHHHHTTTS-EEEEEEEEEE-CC
T ss_pred             -eEEEEEecCCEEEEECCCCCCCCCHHHHHHHHHHHHhhCcCCCC--CCeeEEEEcCCHHHhcCCC-cEEEEccCCC-cC
Confidence             99999999999999999999999999999999999999999993  5899999999999999998 9999999997 88


Q ss_pred             CCCccCCCCCCeEEEECccccCCCCCCCc-----ceeEEecCCCCCHHHHHHHHHHHHHHH
Q psy14698        147 KPADLVPADEPIVIVIGAMAHGQVDTDYT-----EGNISISNFPLSAALTCTKLCSAFEEA  202 (206)
Q Consensus       147 ~~~~~~~~~~~~~~~IGafp~Gd~~~~~~-----~~~isIs~~~Lsa~~v~~ri~~~~E~~  202 (206)
                      ++.++++...  +|+|||||||||+++|.     ++.||||+||||||+||+|+|++||++
T Consensus       180 ~~~~~~~~~~--~~vIGafphGdf~~~~~~~~~~~~~iSIs~~pLsa~~v~~ri~~a~E~~  238 (244)
T 3o7b_A          180 EFSELLDGDV--AVCIGAFPHGDFFEETLRELGEFKEVSLGTESYTSLYVTSRVLCEYERV  238 (244)
T ss_dssp             CHHHHTSSSE--EEEEECSSSSCCCHHHHHHHCSEEEECCCSSCCCHHHHHHHHHHHHHHH
T ss_pred             CHHHHhhcCC--EEEECcccCCCccHhhhhhccCccEEEEeCCChHHHHHHHHHHHHHHHh
Confidence            9999986533  99999999999998873     679999999999999999999999987

>2qmm_A UPF0217 protein AF_1056; alpha/beta knot, SAM, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.85A {Archaeoglobus fulgidus dsm 4304} SCOP: c.116.1.7

Probab=99.96  E-value=3.2e-30  Score=217.82  Aligned_cols=148  Identities=16%  Similarity=0.129  Sum_probs=130.6

Q ss_pred             HhCCCCCCCCCCChHHHHHHHhhCchhhcCCcceEEEEecC------------CEEEEEcCCCCCCCChhHHHHHHHHHh
Q psy14698         36 KKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEK------------NVLIEVNPQTRIPRTFKRFAGLMVQLL  103 (206)
Q Consensus        36 ~kl~~~~~~gRPDIvH~~LL~lldSpLNk~G~L~VyIhT~~------------~~lI~V~P~~RiPRty~rF~gLM~qLL  103 (206)
                      ++++.   +|||||+|+||+++|.|++|..|.++||+||.+            ++|++|+|+.|      ||.|||+|+|
T Consensus        22 ~~Lpg---~GR~DIl~r~l~~al~~s~~~R~dv~vyl~l~~~p~p~~ti~f~g~~v~~v~PdeR------~~~gli~kaL   92 (197)
T 2qmm_A           22 NDLPG---AGRMDVLCRCTSQALFISHGIRRDVEVYLLLLGPPSPPKSILIKGDEVRRMSPDER------NVAGHIKKAL   92 (197)
T ss_dssp             TCTTT---TTSHHHHHHHHHHHHEETTEECTTEEEEEEECCSSSCCEEEEEETTTCCSCCSSHH------HHHHHHHHHH
T ss_pred             hhcCC---CCCceeHHHHHHHHHhhhhcccCCeEEEEEECCCCCCCeeEEecCCeEEEcChhHH------HHHHHHHHHH
Confidence            34544   999999999999999999999999999999999            99999999999      9999999999


Q ss_pred             hh--CceecCCCCccceEEEeccccccccC-C--CeEEEEeccCCcccCCCccCCCCCCeEEEECccccCCCCCC-----
Q psy14698        104 HK--FSVRASDSNIKLLKVIKNPITQHLPV-G--VRKIGTSFSSSKLTKPADLVPADEPIVIVIGAMAHGQVDTD-----  173 (206)
Q Consensus       104 ~~--~~V~~~~~~~~Llkv~~~~l~~~lp~-~--~~~i~ls~~g~~~v~~~~~~~~~~~~~~~IGafp~Gd~~~~-----  173 (206)
                      ++  +++++.  .+|++++.+.++++++.. +  .++|.|+++|+ .+...++   ..+.+|++|+  ||+|+++     
T Consensus        93 ~~~~~~~~~~--~~pgi~v~~~sle~ll~e~~~~~~v~~L~E~G~-~i~~~~~---~~~~~fvlGd--H~~f~~e~~~~l  164 (197)
T 2qmm_A           93 AVECGKSWKK--VHSGVYVSRKGLEELIEELSEKYSIIYLKEDGV-DISNAQL---PPNPLFVIGD--HEGLTEEQEKVV  164 (197)
T ss_dssp             HSCCCSSCEE--EETTEEEECCCHHHHHHHHHHHSEEEEEEEEEE-EGGGSCC---CSSEEEEEEC--TTCCCHHHHHHH
T ss_pred             HhccCcccCC--CCCCEEEECCCHHHHHHHhhcCCcEEEEcCCCC-CCchhhc---CCCCEEEEeC--CCCCCHHHHHHH
Confidence            99  888765  468999999999999985 2  36999999998 6555565   2468999999  9999876     


Q ss_pred             --CcceeEEecCCCCCHHHHHHHHHHHHH
Q psy14698        174 --YTEGNISISNFPLSAALTCTKLCSAFE  200 (206)
Q Consensus       174 --~~~~~isIs~~~Lsa~~v~~ri~~~~E  200 (206)
                        .+++.|||++.+|.||+|++++-+.+-
T Consensus       165 ~~~~~~~iSigp~~L~A~~vi~~vh~~ld  193 (197)
T 2qmm_A          165 ERYAALKLSLSPLSLLAEQCVVIAHHHLD  193 (197)
T ss_dssp             HTTCSEEEECCSSCCCHHHHHHHHHHHHH
T ss_pred             HHhcCeEEEECCchhHHHHHHHHHHHHHh
Confidence              477999999999999999999987763

>2qwv_A UPF0217 protein VC_A1059; unknown function, structural genomics, PSI- 2, protein structure initiative; 2.60A {Vibrio cholerae o1 biovar eltor str} SCOP: c.116.1.7

Probab=96.88  E-value=0.016  Score=48.98  Aligned_cols=152  Identities=13%  Similarity=0.066  Sum_probs=98.2

Q ss_pred             CCCCCCChHHHHHHHhhCchhhcCCcceEEEEecCC----EEEEEcC-CCCC-C-CChhHHHHHHHHHhhhCceecCC--
Q psy14698         42 PGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKN----VLIEVNP-QTRI-P-RTFKRFAGLMVQLLHKFSVRASD--  112 (206)
Q Consensus        42 ~~~gRPDIvH~~LL~lldSpLNk~G~L~VyIhT~~~----~lI~V~P-~~Ri-P-Rty~rF~gLM~qLL~~~~V~~~~--  112 (206)
                      -..||.||+=.|+.+++=--=.-..-.+||+.-.++    +.|.+.. ++|- - ..-....+++..-|+++.....+  
T Consensus        30 G~~GR~DvLcR~v~sAlflSh~iR~Dv~v~lvL~g~p~pp~tI~f~g~~lr~l~~PDErs~a~lI~kAL~~~~~~~~~~~  109 (208)
T 2qwv_A           30 GGKCHTEILAHCMMNSLFTAQSHREDVVIHLVLESTRDYSRTITVEANEISDVGGFHEAALIALLVKALDASVGMGKEQT  109 (208)
T ss_dssp             TSSSCTHHHHHHHHHHHBCSSSBCSSEEEEEEEEECSSSCEEEEEETTTC----CCSHHHHHHHHHHHHHHTTTCCTTCE
T ss_pred             CccCceehHHHHHHHHHHHhccccCCeEEEEEEcCCCCCCeEEEEeCcccccCCCCchHHHHHHHHHHHHhccccccccc
Confidence            457999999999997763222233345788886664    5665544 3433 2 24567889999999885432211  


Q ss_pred             -CCccceEEEeccccccccC---CCeEEEEeccCCcccCCCccCCCCCCeEEEECccccCCCCC-------CCcceeEEe
Q psy14698        113 -SNIKLLKVIKNPITQHLPV---GVRKIGTSFSSSKLTKPADLVPADEPIVIVIGAMAHGQVDT-------DYTEGNISI  181 (206)
Q Consensus       113 -~~~~Llkv~~~~l~~~lp~---~~~~i~ls~~g~~~v~~~~~~~~~~~~~~~IGafp~Gd~~~-------~~~~~~isI  181 (206)
                       ...|=+.|-+.++++++..   ...++-|+++|+ .  .+++.- ..+.+|+.|  -|-++++       +.+.+.||+
T Consensus       110 ~~~~pGi~v~~~~fe~ll~e~~~~~~ly~L~e~G~-d--i~~~~~-~~~~~FvLg--DH~g~~~eee~~L~~~~~~~iSl  183 (208)
T 2qwv_A          110 RVVQPGLTVRTISFEALLGELAEHHSLYMMDKKGD-S--IRDIKI-GPNPCFILT--DHIPMPKKSGNSMKRLGVEKISL  183 (208)
T ss_dssp             EEEETTEEEECCCHHHHHHHHHTTSEEEEEEEEEE-E--TTTSCC-CSSEEEEEC--C----------CTTTTTCEEEEC
T ss_pred             cccCCCEEEecCCHHHHHHHHHhcCcEEEEeCCCc-C--HhhccC-CCCCEEEEc--CCCCCCHHHHHHHHhcCCeEEEe
Confidence             1123378888999999974   225899999998 3  233321 246899999  3434432       246799999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q psy14698        182 SNFPLSAALTCTKLCSAF  199 (206)
Q Consensus       182 s~~~Lsa~~v~~ri~~~~  199 (206)
                      +..+|-||+|+.-+-+.+
T Consensus       184 GP~~l~A~hcI~~vhn~L  201 (208)
T 2qwv_A          184 GPKMLFASQCVTLIHNEI  201 (208)
T ss_dssp             CSSCCCHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHH
Confidence            999999999997776655

>4fak_A Ribosomal RNA large subunit methyltransferase H; alpha/beta methyltransferase rossmann fold, rRNA methylation rRNA, ribosomal protein; HET: SAM PG4; 1.70A {Staphylococcus aureus} PDB: 1vh0_A

Probab=96.29  E-value=0.0017  Score=52.91  Aligned_cols=75  Identities=16%  Similarity=0.232  Sum_probs=51.3

Q ss_pred             cccccCCCeEEEEeccCCcccCCCccCC-------C-CCCeEEEECccccCCCCCCC---cceeEEecCCCCCHHHHHHH
Q psy14698        126 TQHLPVGVRKIGTSFSSSKLTKPADLVP-------A-DEPIVIVIGAMAHGQVDTDY---TEGNISISNFPLSAALTCTK  194 (206)
Q Consensus       126 ~~~lp~~~~~i~ls~~g~~~v~~~~~~~-------~-~~~~~~~IGafp~Gd~~~~~---~~~~isIs~~~Lsa~~v~~r  194 (206)
                      -..+|+++.+|+|+++|+ ..+-.+|+.       . ...++|+||| |.|- +++.   ++..+|+|.-.++-..+=--
T Consensus        68 l~~i~~~~~vI~LD~~Gk-~~sS~~fA~~l~~~~~~g~~~i~FvIGG-~~Gl-~~~v~~rA~~~lSlS~mTfpHqL~Rli  144 (163)
T 4fak_A           68 LAKIKPQSTVITLEIQGK-MLSSEGLAQELNQRMTQGQSDFVFVIGG-SNGL-HKDVLQRSNYALSFSKMTFPHQMMRVV  144 (163)
T ss_dssp             HHTCCTTSEEEEEEEEEE-ECCHHHHHHHHHHHHHTTCCEEEEEECB-TTBC-CHHHHHHCSEEEESCSSCCCHHHHHHH
T ss_pred             HHhCCCCCEEEEEcCCCC-cCCHHHHHHHHHHHHhcCCcceEEEEEC-CCcc-CHHHHHhcCceEEEecCCCCHHHHHHH
Confidence            345666778999999997 555555542       1 2469999999 7774 4443   88999999998887665444


Q ss_pred             HHHHHHHHh
Q psy14698        195 LCSAFEEAW  203 (206)
Q Consensus       195 i~~~~E~~~  203 (206)
                      ++.-+-++|
T Consensus       145 L~EQlYRA~  153 (163)
T 4fak_A          145 LIEQVYRAF  153 (163)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444444444

>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3

Probab=95.58  E-value=0.0068  Score=49.40  Aligned_cols=76  Identities=14%  Similarity=0.214  Sum_probs=50.3

Q ss_pred             ccccccCCCeEEEEeccCCcccCCCccCC-------CCCCeEEEECccccCCCCCC---CcceeEEecCCCCCHHHHHHH
Q psy14698        125 ITQHLPVGVRKIGTSFSSSKLTKPADLVP-------ADEPIVIVIGAMAHGQVDTD---YTEGNISISNFPLSAALTCTK  194 (206)
Q Consensus       125 l~~~lp~~~~~i~ls~~g~~~v~~~~~~~-------~~~~~~~~IGafp~Gd~~~~---~~~~~isIs~~~Lsa~~v~~r  194 (206)
                      +...+|++..+|+|+++|+ ..+-.+|+.       ....++|+||| |.|- +++   -++..+|+|.-.++-..+=--
T Consensus        58 il~~i~~~~~vI~LD~~Gk-~~sS~~fA~~l~~~~~~G~~i~FvIGG-a~Gl-~~~v~~rAd~~lSlS~mTfpHqL~Rli  134 (163)
T 1o6d_A           58 LTNRILPGSFVMVMDKRGE-EVSSEEFADFLKDLEMKGKDITILIGG-PYGL-NEEIFAKAHRVFSLSKMTFTHGMTVLI  134 (163)
T ss_dssp             HHTTCCTTCEEEEEEEEEE-ECCHHHHHHHHHHHHHHTCCEEEEECC-TTCC-CGGGGGGCSEEEECCSSCCCHHHHHHH
T ss_pred             HHHhcCCCCEEEEEcCCCC-cCCHHHHHHHHHHHHhcCCeEEEEEEC-CCCC-CHHHHHhhCceEEccCCCCcHHHHHHH
Confidence            3344555556899999997 555555542       13579999999 6663 444   378899999988887655444


Q ss_pred             HHHHHHHHh
Q psy14698        195 LCSAFEEAW  203 (206)
Q Consensus       195 i~~~~E~~~  203 (206)
                      ++.-+-++|
T Consensus       135 L~EQiYRA~  143 (163)
T 1o6d_A          135 VLEQIFRAF  143 (163)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444344444

>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3

Probab=95.08  E-value=0.011  Score=48.32  Aligned_cols=73  Identities=15%  Similarity=0.267  Sum_probs=48.4

Q ss_pred             cccCCCeEEEEeccCCcccCCCccCC-------CC-CCeEEEECccccCCCCCCC---cceeEEecCCCCCHHHHHHHHH
Q psy14698        128 HLPVGVRKIGTSFSSSKLTKPADLVP-------AD-EPIVIVIGAMAHGQVDTDY---TEGNISISNFPLSAALTCTKLC  196 (206)
Q Consensus       128 ~lp~~~~~i~ls~~g~~~v~~~~~~~-------~~-~~~~~~IGafp~Gd~~~~~---~~~~isIs~~~Lsa~~v~~ri~  196 (206)
                      .+|++..+|+|++.|+ ..+-.+|+.       .+ ..++|+||| |.|- +++.   ++..+|+|.-.++-..+=--++
T Consensus        66 ~i~~~~~vI~LD~~Gk-~~sS~~fA~~l~~~~~~G~~~i~FvIGG-a~Gl-~~~v~~rA~~~lSlS~mTfpHqL~RliL~  142 (167)
T 1to0_A           66 KISPDAHVIALAIEGK-MKTSEELADTIDKLATYGKSKVTFVIGG-SLGL-SDTVMKRADEKLSFSKMTFPHQLMRLILV  142 (167)
T ss_dssp             TSCTTSEEEEEEEEEE-ECCHHHHHHHHHHHHTTTCCEEEEEECC-SSCC-CHHHHHHCSEEEESCSSCCCHHHHHHHHH
T ss_pred             hcCCCCEEEEEcCCCC-cCCHHHHHHHHHHHHhcCCceEEEEEEC-CCCC-CHHHHHhhCcEEEccCCCCcHHHHHHHHH
Confidence            4455556899999997 555555542       12 469999999 6663 4443   8899999998888765544444


Q ss_pred             HHHHHHh
Q psy14698        197 SAFEEAW  203 (206)
Q Consensus       197 ~~~E~~~  203 (206)
                      .-+-++|
T Consensus       143 EQiYRA~  149 (167)
T 1to0_A          143 EQIYRAF  149 (167)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4344444

>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3

Probab=94.40  E-value=0.0095  Score=48.08  Aligned_cols=73  Identities=16%  Similarity=0.269  Sum_probs=48.2

Q ss_pred             ccccCCCeEEEEeccCCcccCCCccCC-------CCCCeEEEECccccCCCCCCC---cceeEEecCCCCCHHHHHHHHH
Q psy14698        127 QHLPVGVRKIGTSFSSSKLTKPADLVP-------ADEPIVIVIGAMAHGQVDTDY---TEGNISISNFPLSAALTCTKLC  196 (206)
Q Consensus       127 ~~lp~~~~~i~ls~~g~~~v~~~~~~~-------~~~~~~~~IGafp~Gd~~~~~---~~~~isIs~~~Lsa~~v~~ri~  196 (206)
                      ..+|++ .+|+|++.|+ ..+-.+|+.       ....++|+||| |.|- +++.   ++..+|+|.-.++-..+=--++
T Consensus        62 ~~i~~~-~vi~Ld~~Gk-~~sS~~fA~~l~~~~~~g~~i~FvIGG-~~Gl-~~~v~~rA~~~lSlS~mT~pHql~RliL~  137 (155)
T 1ns5_A           62 AAAGKN-RIVTLDIPGK-PWDTPQLAAELERWKLDGRDVSLLIGG-PEGL-SPACKAAAEQSWSLSALTLPHPLVRVLVA  137 (155)
T ss_dssp             HHHTTS-EEEEEEEEEE-CCCHHHHHHHHHHHHHHCSCEEEEECB-TTBC-CHHHHHHCSEEECCCSSCCCHHHHHHHHH
T ss_pred             HhcCCC-cEEEEcCCCC-cCCHHHHHHHHHHHHhcCCeEEEEEEC-CCCC-CHHHHHhhCceEEccCCCCcHHHHHHHHH
Confidence            344555 6899999997 555555542       13579999999 6663 4443   7889999998888765543444


Q ss_pred             HHHHHHh
Q psy14698        197 SAFEEAW  203 (206)
Q Consensus       197 ~~~E~~~  203 (206)
                      .-+-++|
T Consensus       138 EQiYRA~  144 (155)
T 1ns5_A          138 ESLYRAW  144 (155)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3344444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	206
d2v3ka1	227	c.116.1.6 (A:25-251) Essential for mitotic growth	2e-85
d3bbda1	204	c.116.1.6 (A:2-205) Ribosome biogenesis protein NE	2e-79

>d2v3ka1 c.116.1.6 (A:25-251) Essential for mitotic growth 1, EMG1 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 227

class: Alpha and beta proteins (a/b)
fold: alpha/beta knot
superfamily: alpha/beta knot
family: EMG1/NEP1-like
domain: Essential for mitotic growth 1, EMG1
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score =  249 bits (638), Expect = 2e-85
 Identities = 101/190 (53%), Positives = 130/190 (68%), Gaps = 4/190 (2%)

Query: 20  KNAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVL 79
            + + LLNCDDH  LLKK GR+    RPDI HQCLL L+DSP+N+AG LQVYI T + +L
Sbjct: 38  GDKYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSRGIL 97

Query: 80  IEVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTS 139
           IEVNP  RIPRTFKRF+GLMVQLLHK S+R+ +S  KLLKVIKNPIT HLP   RK+  S
Sbjct: 98  IEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLS 157

Query: 140 FSSSKLT--KPADLVPADEPIVIVIGAMAHG--QVDTDYTEGNISISNFPLSAALTCTKL 195
           F +  +      + +  DE I + +GAMA G      +Y +  + +SN+PLSA++ C+K 
Sbjct: 158 FDAPVIRVQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKF 217

Query: 196 CSAFEEAWGV 205
           C   E+AW +
Sbjct: 218 CHGAEDAWNI 227

>d3bbda1 c.116.1.6 (A:2-205) Ribosome biogenesis protein NEP1 {Methanococcus jannaschii [TaxId: 2190]} Length = 204

class: Alpha and beta proteins (a/b)
fold: alpha/beta knot
superfamily: alpha/beta knot
family: EMG1/NEP1-like
domain: Ribosome biogenesis protein NEP1
species: Methanococcus jannaschii [TaxId: 2190]

 Score =  234 bits (598), Expect = 2e-79
 Identities = 53/186 (28%), Positives = 88/186 (47%), Gaps = 14/186 (7%)

Query: 20  KNAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVL 79
              +++L+ + H   ++K   +    RPDI+H  LL ++DSP+N    L +YIHT  + +
Sbjct: 27  VYKYDILDSNYHYKAMEKLKDKEMRGRPDIIHISLLNILDSPINHEKKLNIYIHTYDDKV 86

Query: 80  IEVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTS 139
           +++NP+TR+PR + RF G+M ++L            K L+ + N I         KI   
Sbjct: 87  LKINPETRLPRNYFRFLGVMEKVLKGERNHLIKMEEKTLEDLLNEINAK------KIAIM 140

Query: 140 FSSSKLTKPADLVPADEPIVIVIGAMAHGQVDTDYTE-----GNISISNFPLSAALTCTK 194
             + KLT P  L    E    +IG   +G++  +  +       ISI N  L A   C  
Sbjct: 141 TKTGKLTHPKLL---KEYDTFIIGGFPYGKLKINKEKVFGDIKEISIYNKGLMAWTVCGI 197

Query: 195 LCSAFE 200
           +C +  
Sbjct: 198 ICYSLS 203

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	206
d2v3ka1	227	Essential for mitotic growth 1, EMG1 {Saccharomyce	100.0
d3bbda1	204	Ribosome biogenesis protein NEP1 {Methanococcus ja	100.0
d2qwva1	201	Uncharacterized protein VCA1059 {Vibrio cholerae [	96.73
d2qmma1	194	Uncharacterized protein AF1056 {Archaeoglobus fulg	95.76
d1to0a_	157	Hypothetical protein YydA {Bacillus subtilis [TaxI	95.72
d1o6da_	147	Hypothetical protein TM0844 {Thermotoga maritima [	95.27
d1vh0a_	157	Hypothetical protein SAV0024/SA0023 {Staphylococcu	91.83
d1ns5a_	153	Hypothetical protein YbeA {Escherichia coli [TaxId	89.47

>d2v3ka1 c.116.1.6 (A:25-251) Essential for mitotic growth 1, EMG1 {Saccharomyces cerevisiae [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta knot
superfamily: alpha/beta knot
family: EMG1/NEP1-like
domain: Essential for mitotic growth 1, EMG1
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=100.00  E-value=1.7e-82  Score=545.13  Aligned_cols=202  Identities=51%  Similarity=0.875  Sum_probs=189.4

Q ss_pred             CceEEEeccCceeeEee------cCceEeeCchhhHHHHHhCCCCCCCCCCChHHHHHHHhhCchhhcCCcceEEEEecC
Q psy14698          3 GGHYKVAQNYFIFNFQT------KNAFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEK   76 (206)
Q Consensus         3 ~~~~~~l~~a~le~~k~------~~~~~LLd~~~H~~~m~kl~~~~~~gRPDIvH~~LL~lldSpLNk~G~L~VyIhT~~   76 (206)
                      ...+|||++|+||++|+      +++|+|||+|+|++||++++++++||||||||||||++|||||||+|+|||||||.+
T Consensus        15 ~~l~~vL~~a~Le~~k~~~~~~~~~~~~LL~~~~H~~~m~~~~~~~~~~RPDIvH~~LL~l~dSpLnk~g~L~VyihT~~   94 (227)
T d2v3ka1          15 KRMIVVLAMASLETHKISSNGPGGDKYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSR   94 (227)
T ss_dssp             CCEEEEEEEECCCEECC---------CEECCTTTCHHHHHHTTCCGGGCCHHHHHHHHHHHHTSHHHHTTCEEEEEEETT
T ss_pred             ceEEEEECCCcceeeeeccccCCCCccEecccHHHHHHHHHcCCcccccCcCHHHHHHHHHhcChhhhcCceEEEEEecC
Confidence            46899999999999998      456999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEcCCCCCCCChhHHHHHHHHHhhhCceecCCCCccceEEEeccccccccCCCeEEEEeccCCcccCCCccC---C
Q psy14698         77 NVLIEVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLPVGVRKIGTSFSSSKLTKPADLV---P  153 (206)
Q Consensus        77 ~~lI~V~P~~RiPRty~rF~gLM~qLL~~~~V~~~~~~~~Llkv~~~~l~~~lp~~~~~i~ls~~g~~~v~~~~~~---~  153 (206)
                      |++|+|||++||||||+||+|||+|||++++|++++++++||+++++|+++++|.|+++|+||++|+ .+++.+++   +
T Consensus        95 ~~lI~V~p~~RvPrty~rF~gLm~qLl~~~~i~~~~~~~~Ll~vikn~Itd~lp~~~k~I~LS~~G~-~~~~~~l~~~l~  173 (227)
T d2v3ka1          95 GILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFDAP-VIRVQDYIEKLD  173 (227)
T ss_dssp             SCEEEECTTCCCCSSHHHHHHHHHHHHHHSEEECTTTCSEEEEEECSCGGGTSCSSEEEEEECTTSC-BCCHHHHHHTSC
T ss_pred             CEEEEECCCCcCCCCHHHHHHHHHHHHHhCccccCCCccceeeeeccccccccCCCCeEEEECCCCC-ccCHHHHHHHhc
Confidence            9999999999999999999999999999999999888899999999999999999999999999997 77777764   3


Q ss_pred             CCCCeEEEECccccCCCC--CCCcceeEEecCCCCCHHHHHHHHHHHHHHHhCC
Q psy14698        154 ADEPIVIVIGAMAHGQVD--TDYTEGNISISNFPLSAALTCTKLCSAFEEAWGV  205 (206)
Q Consensus       154 ~~~~~~~~IGafp~Gd~~--~~~~~~~isIs~~~Lsa~~v~~ri~~~~E~~~gi  205 (206)
                      .+.+++|+||||||||++  ++|.++.||||+||||||+||+|||++||++|||
T Consensus       174 ~~~~v~~viG~f~~GD~~~~~~yide~ISIsdypLSa~~v~sri~~~~E~~~~i  227 (227)
T d2v3ka1         174 DDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKFCHGAEDAWNI  227 (227)
T ss_dssp             TTCEEEEEEECSSSSCSCTTTTTCSEEEBSCSSCCCHHHHHHHHHHHHHHHTTC
T ss_pred             cCCCEEEEEeeecCCCccccccccceEEEEeCcchhHHHHHHHHHHHHHHHhCc
Confidence            467899999999999964  5789999999999999999999999999999997

>d3bbda1 c.116.1.6 (A:2-205) Ribosome biogenesis protein NEP1 {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta knot
superfamily: alpha/beta knot
family: EMG1/NEP1-like
domain: Ribosome biogenesis protein NEP1
species: Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=6.8e-72  Score=472.57  Aligned_cols=184  Identities=28%  Similarity=0.466  Sum_probs=165.6

Q ss_pred             EEeccCceeeEe--------ecC--ceEeeCchhhHHHHHhCCCCCCCCCCChHHHHHHHhhCchhhcCCcceEEEEecC
Q psy14698          7 KVAQNYFIFNFQ--------TKN--AFELLNCDDHGYLLKKDGREPGSCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEK   76 (206)
Q Consensus         7 ~~l~~a~le~~k--------~~~--~~~LLd~~~H~~~m~kl~~~~~~gRPDIvH~~LL~lldSpLNk~G~L~VyIhT~~   76 (206)
                      +||++|+||++.        .+|  +++|||+|+|++||++++++++||||||||||||++|||||||+|+|||||||.+
T Consensus         4 ~VL~~a~LElvp~~~~~~~~~~k~~~~~LLd~~~H~~~mkk~~~~~~~gRPDIvHq~LL~lldSpLNk~g~L~VYIhT~~   83 (204)
T d3bbda1           4 IILAKSALELIPEEIKNKIRKSRVYKYDILDSNYHYKAMEKLKDKEMRGRPDIIHISLLNILDSPINHEKKLNIYIHTYD   83 (204)
T ss_dssp             EEEEEESCCBCCGGGGGGCCCBTTBCCSBCCHHHHTTTTTTCTTGGGSSCHHHHHHHHHHHHTSHHHHTTCEEEEEEETT
T ss_pred             EEEeCCcccccchhhhcCcccCCCccccccchHHHHHHHHhCcCcccccCCCHHHHHHHHHhcChhhhcCCeEEEEEccC
Confidence            799999999992        333  5999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEcCCCCCCCChhHHHHHHHHHhhhCceecCCCCccceEEEecccccccc-CCCeEEEEeccCCcccCCCccCCCC
Q psy14698         77 NVLIEVNPQTRIPRTFKRFAGLMVQLLHKFSVRASDSNIKLLKVIKNPITQHLP-VGVRKIGTSFSSSKLTKPADLVPAD  155 (206)
Q Consensus        77 ~~lI~V~P~~RiPRty~rF~gLM~qLL~~~~V~~~~~~~~Llkv~~~~l~~~lp-~~~~~i~ls~~g~~~v~~~~~~~~~  155 (206)
                      |++|+|||++||||||+||+|||+|||+++++       +|+++.++++++++. .|+++|+++.+|++.+.+..+ .  
T Consensus        84 ~~lI~V~P~~RvPRty~rF~gLM~qLL~~~~~-------~ll~~~~~~l~~l~~~~~~~~i~ls~~~~~~~~~~~~-~--  153 (204)
T d3bbda1          84 DKVLKINPETRLPRNYFRFLGVMEKVLKGERN-------HLIKMEEKTLEDLLNEINAKKIAIMTKTGKLTHPKLL-K--  153 (204)
T ss_dssp             SEEEEECTTCCCCSSHHHHHHHHHHHHTTCCC-------SSEEEEECCHHHHHHHTTCCEEEEEEEEEEECCGGGG-G--
T ss_pred             CEEEEECCCCcCCCCHHHHHHHHHHHhhcCCc-------ceEeccCCcHHHHhCccCCeEEEEEccCCcccCHhHc-C--
Confidence            99999999999999999999999999987554       599999999999994 588889988888766655444 2  


Q ss_pred             CCeEEEECccccCCCCCCCcc-----eeEEecCCCCCHHHHHHHHHHHHH
Q psy14698        156 EPIVIVIGAMAHGQVDTDYTE-----GNISISNFPLSAALTCTKLCSAFE  200 (206)
Q Consensus       156 ~~~~~~IGafp~Gd~~~~~~~-----~~isIs~~~Lsa~~v~~ri~~~~E  200 (206)
                      ++.+|+|||||||||+.++.+     +.||||+||||||+||+|||+||+
T Consensus       154 ~~~~~vIGaf~~G~~~~~~~~~~~~~~~isIs~~pLsa~~v~sri~~a~~  203 (204)
T d3bbda1         154 EYDTFIIGGFPYGKLKINKEKVFGDIKEISIYNKGLMAWTVCGIICYSLS  203 (204)
T ss_dssp             GCSEEEEECSSSSCCCCCGGGCSSEEEEEESSSSCCCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEecCCCccccchhhhccceEEEeeCCChHHHHHHHHHHhhhh
Confidence            357999999999999877622     569999999999999999999997

>d2qwva1 c.116.1.7 (A:5-205) Uncharacterized protein VCA1059 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta knot
superfamily: alpha/beta knot
family: AF1056-like
domain: Uncharacterized protein VCA1059
species: Vibrio cholerae [TaxId: 666]

Probab=96.73  E-value=0.021  Score=45.94  Aligned_cols=151  Identities=13%  Similarity=0.064  Sum_probs=97.9

Q ss_pred             CCCCChHHHHHHHhhCchhhcCCcceEEEEecCC----EEEEEcCCCCCCCC---hhHHHHHHHHHhhhCceecCC---C
Q psy14698         44 SCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKN----VLIEVNPQTRIPRT---FKRFAGLMVQLLHKFSVRASD---S  113 (206)
Q Consensus        44 ~gRPDIvH~~LL~lldSpLNk~G~L~VyIhT~~~----~lI~V~P~~RiPRt---y~rF~gLM~qLL~~~~V~~~~---~  113 (206)
                      .||-||+=.|+.+++=--=.-....+||+|-.++    +.|.++...--+-+   =.-..+++...|....-+..+   +
T Consensus        25 sGRmDvL~R~v~salflShgiR~Dv~v~L~L~g~p~p~r~I~f~g~~l~~l~p~dErs~a~~I~kaL~~~~~~~~~~~~e  104 (201)
T d2qwva1          25 KCHTEILAHCMMNSLFTAQSHREDVVIHLVLESTRDYSRTITVEANEISDVGGFHEAALIALLVKALDASVGMGKEQTRV  104 (201)
T ss_dssp             SSCTHHHHHHHHHHHBCSSSBCSSEEEEEEEEECSSSCEEEEEETTTC----CCSHHHHHHHHHHHHHHTTTCCTTCEEE
T ss_pred             CcchhHHHHHHHHHHHHhcCCccCeEEEEEECCCCCCCeEEEEecccccCCCchhHHHHHHHHHHHhhccCCCCCcceeE
Confidence            5999999999998875444555677899997765    78887766544433   234777777777652210000   0


Q ss_pred             CccceEEEeccccccccC---CCeEEEEeccCCcccCCCccCCCCCCeEEEECccccCCCCCC-------CcceeEEecC
Q psy14698        114 NIKLLKVIKNPITQHLPV---GVRKIGTSFSSSKLTKPADLVPADEPIVIVIGAMAHGQVDTD-------YTEGNISISN  183 (206)
Q Consensus       114 ~~~Llkv~~~~l~~~lp~---~~~~i~ls~~g~~~v~~~~~~~~~~~~~~~IGafp~Gd~~~~-------~~~~~isIs~  183 (206)
                      ..|=+.+-+.++++++..   +..++.|+++|+ .  .++.-. ..+++|++|  -|=.|+++       .+.++||++.
T Consensus       105 ~~pGi~~~~~~~e~~l~e~~e~~~~~~Lde~G~-~--i~~~~~-~~~~~FILs--Dh~~~~~~e~~~L~~~g~~~iSLGp  178 (201)
T d2qwva1         105 VQPGLTVRTISFEALLGELAEHHSLYMMDKKGD-S--IRDIKI-GPNPCFILT--DHIPMPKKSGNSMKRLGVEKISLGP  178 (201)
T ss_dssp             EETTEEEECCCHHHHHHHHHTTSEEEEEEEEEE-E--TTTSCC-CSSEEEEEC--C----------CTTTTTCEEEECCS
T ss_pred             eCCCEEEeCCCHHHHHHHHhcCCcEEEECCCCC-c--hhhccC-CCCCEEEEe--CCCCCCHHHHHHHHhcCCeeEeecc
Confidence            113377888999999863   567899999998 3  233221 245789998  33334322       3568999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q psy14698        184 FPLSAALTCTKLCSAFE  200 (206)
Q Consensus       184 ~~Lsa~~v~~ri~~~~E  200 (206)
                      .+|=|++|+.-+=+.+-
T Consensus       179 ~~L~ashcI~ivH~~LD  195 (201)
T d2qwva1         179 KMLFASQCVTLIHNEID  195 (201)
T ss_dssp             SCCCHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHhh
Confidence            99999999976665554

>d2qmma1 c.116.1.7 (A:95-288) Uncharacterized protein AF1056 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta knot
superfamily: alpha/beta knot
family: AF1056-like
domain: Uncharacterized protein AF1056
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.76  E-value=0.084  Score=42.01  Aligned_cols=147  Identities=15%  Similarity=0.117  Sum_probs=99.8

Q ss_pred             CCCCChHHHHHHHhhCchhhcCCcceEEEEecC----CEEEEEcCCC--CCCCChhHHHHHHHHHhhhCceecCCC---C
Q psy14698         44 SCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEK----NVLIEVNPQT--RIPRTFKRFAGLMVQLLHKFSVRASDS---N  114 (206)
Q Consensus        44 ~gRPDIvH~~LL~lldSpLNk~G~L~VyIhT~~----~~lI~V~P~~--RiPRty~rF~gLM~qLL~~~~V~~~~~---~  114 (206)
                      -||-||+=.|+.++|=--=.-....+||+|-..    .+.|.++..-  ++...=.-..|++..-|..   ++.+.   .
T Consensus        24 sGRmDVl~R~v~aAlflShgiR~Dv~v~l~L~g~p~p~r~I~f~G~~lk~l~pdErSia~~I~kaL~~---~~~~~~~e~  100 (194)
T d2qmma1          24 AGRMDVLCRCTSQALFISHGIRRDVEVYLLLLGPPSPPKSILIKGDEVRRMSPDERNVAGHIKKALAV---ECGKSWKKV  100 (194)
T ss_dssp             TTSHHHHHHHHHHHHEETTEECTTEEEEEEECCSSSCCEEEEEETTTCCSCCSSHHHHHHHHHHHHHS---CCCSSCEEE
T ss_pred             CCceehhhHHHHHHHHHhcCccCCcEEEEEEcCCCCCCeeEEEeccccccCCccHHHHHHHHHHHhcC---CCCCCceee
Confidence            599999999999877433333446689999753    4677776653  6666778899999998863   22110   1


Q ss_pred             ccceEEEeccccccccC---CCeEEEEeccCCcccCCCccCCCCCCeEEEECccccCCCCCC-------CcceeEEecCC
Q psy14698        115 IKLLKVIKNPITQHLPV---GVRKIGTSFSSSKLTKPADLVPADEPIVIVIGAMAHGQVDTD-------YTEGNISISNF  184 (206)
Q Consensus       115 ~~Llkv~~~~l~~~lp~---~~~~i~ls~~g~~~v~~~~~~~~~~~~~~~IGafp~Gd~~~~-------~~~~~isIs~~  184 (206)
                      .+=+.+-+.++++.+..   +..++.|+++|+ .+  .+... .++.+|++|  -|=+|+++       +..+.+|++..
T Consensus       101 ~pGI~vs~~~~e~~l~e~~~~~~~~~Ld~~G~-~i--~~~~~-~~~~~FILs--Dh~~l~~~e~~~L~~~~~~~iSLGp~  174 (194)
T d2qmma1         101 HSGVYVSRKGLEELIEELSEKYSIIYLKEDGV-DI--SNAQL-PPNPLFVIG--DHEGLTEEQEKVVERYAALKLSLSPL  174 (194)
T ss_dssp             ETTEEEECCCHHHHHHHHHHHSEEEEEEEEEE-EG--GGSCC-CSSEEEEEE--CTTCCCHHHHHHHHTTCSEEEECCSS
T ss_pred             cCCEEEeCCCHHHHHHHHhccCcEEEECCCCC-cc--ccccc-CCCCeEEEe--CCCCCChHHHHHHhhcCCeeEecccc
Confidence            12267788888888863   346788999998 32  23221 245689998  33345432       35678999999


Q ss_pred             CCCHHHHHHHHHHHH
Q psy14698        185 PLSAALTCTKLCSAF  199 (206)
Q Consensus       185 ~Lsa~~v~~ri~~~~  199 (206)
                      +|-|++|+.-+=+.+
T Consensus       175 ~L~a~hcI~ivh~~L  189 (194)
T d2qmma1         175 SLLAEQCVVIAHHHL  189 (194)
T ss_dssp             CCCHHHHHHHHHHHH
T ss_pred             ccchhhhHhHHHHHH
Confidence            999999997665444

>d1to0a_ c.116.1.3 (A:) Hypothetical protein YydA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta knot
superfamily: alpha/beta knot
family: YbeA-like
domain: Hypothetical protein YydA
species: Bacillus subtilis [TaxId: 1423]

Probab=95.72  E-value=0.0024  Score=49.03  Aligned_cols=76  Identities=16%  Similarity=0.271  Sum_probs=50.4

Q ss_pred             ccccccCCCeEEEEeccCCcccCCCccCC-------C-CCCeEEEECccccCCCCCCC---cceeEEecCCCCCHHHHHH
Q psy14698        125 ITQHLPVGVRKIGTSFSSSKLTKPADLVP-------A-DEPIVIVIGAMAHGQVDTDY---TEGNISISNFPLSAALTCT  193 (206)
Q Consensus       125 l~~~lp~~~~~i~ls~~g~~~v~~~~~~~-------~-~~~~~~~IGafp~Gd~~~~~---~~~~isIs~~~Lsa~~v~~  193 (206)
                      +-+.++++..+|+|+++|+ ..+-.+|+.       . ...++|+||| |+|- +++.   ++..+|+|+-.++-..+--
T Consensus        63 il~~i~~~~~~I~LDe~Gk-~~sS~~fA~~l~~~~~~g~~~i~FiIGG-a~G~-~~~~~~~a~~~~Sls~mT~pH~l~r~  139 (157)
T d1to0a_          63 ILSKISPDAHVIALAIEGK-MKTSEELADTIDKLATYGKSKVTFVIGG-SLGL-SDTVMKRADEKLSFSKMTFPHQLMRL  139 (157)
T ss_dssp             HHTTSCTTSEEEEEEEEEE-ECCHHHHHHHHHHHHTTTCCEEEEEECC-SSCC-CHHHHHHCSEEEESCSSCCCHHHHHH
T ss_pred             HHhhcCCCCeEEEeccchh-hhhHHHHHHHHHHHHhcCCcceEEEECC-CCCC-CHHHHhhcCcEEecccCCchHHHHHH
Confidence            3445566778999999997 555555442       1 2458999998 5663 3333   7889999998888766554


Q ss_pred             HHHHHHHHHh
Q psy14698        194 KLCSAFEEAW  203 (206)
Q Consensus       194 ri~~~~E~~~  203 (206)
                      -++.-+-++|
T Consensus       140 ~l~EQiYRa~  149 (157)
T d1to0a_         140 ILVEQIYRAF  149 (157)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            4454444444

>d1o6da_ c.116.1.3 (A:) Hypothetical protein TM0844 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta knot
superfamily: alpha/beta knot
family: YbeA-like
domain: Hypothetical protein TM0844
species: Thermotoga maritima [TaxId: 2336]

Probab=95.27  E-value=0.0047  Score=46.94  Aligned_cols=76  Identities=14%  Similarity=0.214  Sum_probs=53.6

Q ss_pred             ccccccCCCeEEEEeccCCcccCCCccCC-------CCCCeEEEECccccCCCCCC---CcceeEEecCCCCCHHHHHHH
Q psy14698        125 ITQHLPVGVRKIGTSFSSSKLTKPADLVP-------ADEPIVIVIGAMAHGQVDTD---YTEGNISISNFPLSAALTCTK  194 (206)
Q Consensus       125 l~~~lp~~~~~i~ls~~g~~~v~~~~~~~-------~~~~~~~~IGafp~Gd~~~~---~~~~~isIs~~~Lsa~~v~~r  194 (206)
                      +.+.++++..+|+|+++|. .++-.+|+.       .+..++|+||| |.|- +++   -+++.+|+|+-.++-..+---
T Consensus        56 il~~i~~~~~~I~LDe~Gk-~~sS~~fA~~l~~~~~~g~~i~FiIGG-a~Gl-~~~~~~~a~~~lSls~mT~pH~l~rv~  132 (147)
T d1o6da_          56 LTNRILPGSFVMVMDKRGE-EVSSEEFADFLKDLEMKGKDITILIGG-PYGL-NEEIFAKAHRVFSLSKMTFTHGMTVLI  132 (147)
T ss_dssp             HHTTCCTTCEEEEEEEEEE-ECCHHHHHHHHHHHHHHTCCEEEEECC-TTCC-CGGGGGGCSEEEECCSSCCCHHHHHHH
T ss_pred             HhccCCCCCEEEEEecccC-CcCCHHHHHHHHHHHhcCCCCEEEEEC-CCCC-CHHHHHhcCcEEeCCcCcchHHHHHHH
Confidence            5566777778999999997 666555542       14679999996 4553 333   388999999998887766555


Q ss_pred             HHHHHHHHh
Q psy14698        195 LCSAFEEAW  203 (206)
Q Consensus       195 i~~~~E~~~  203 (206)
                      ++.-+.++|
T Consensus       133 l~EQlYRa~  141 (147)
T d1o6da_         133 VLEQIFRAF  141 (147)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555555554

>d1vh0a_ c.116.1.3 (A:) Hypothetical protein SAV0024/SA0023 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta knot
superfamily: alpha/beta knot
family: YbeA-like
domain: Hypothetical protein SAV0024/SA0023
species: Staphylococcus aureus [TaxId: 1280]

Probab=91.83  E-value=0.032  Score=42.37  Aligned_cols=76  Identities=17%  Similarity=0.236  Sum_probs=49.2

Q ss_pred             ccccccCCCeEEEEeccCCcccCCCccCC--------CCCCeEEEECccccCCCCCC---CcceeEEecCCCCCHHHHHH
Q psy14698        125 ITQHLPVGVRKIGTSFSSSKLTKPADLVP--------ADEPIVIVIGAMAHGQVDTD---YTEGNISISNFPLSAALTCT  193 (206)
Q Consensus       125 l~~~lp~~~~~i~ls~~g~~~v~~~~~~~--------~~~~~~~~IGafp~Gd~~~~---~~~~~isIs~~~Lsa~~v~~  193 (206)
                      +-+.++++..+|+|+++|+ ..+-.+|+.        ....++|+|||- .|- +++   -++..+|+|+-.++-..+--
T Consensus        63 il~~i~~~~~~I~LDe~Gk-~~sS~~fA~~i~~~~~~g~~~i~FiIGGa-~G~-~~~~~~~a~~~lSls~mT~pH~larv  139 (157)
T d1vh0a_          63 ILAKIKPQSTVITLEIQGK-MLSSEGLAQELNQRMTQGQSDFVFVIGGS-NGL-HKDVLQRSNYALSFSKMTFPHQMMRV  139 (157)
T ss_dssp             HHHTSCTTSEEEEEEEEEE-CCCHHHHHHHHHHHHHTTCCEEEEEECBT-TBC-CHHHHHHCSEEECSCSSCCCHHHHHH
T ss_pred             HHHhcCCCCeEEEEecccc-cCCCHHHHHHHHHHHhhcCCceEEEEcCC-Ccc-CHHHHhhcCCEEECccCCchhHHHHH
Confidence            3455667778999999997 555555542        234689999974 453 333   28899999998887755443


Q ss_pred             HHHHHHHHHh
Q psy14698        194 KLCSAFEEAW  203 (206)
Q Consensus       194 ri~~~~E~~~  203 (206)
                      -++.-+.++|
T Consensus       140 ~l~EQlYRa~  149 (157)
T d1vh0a_         140 VLIEQVYRAF  149 (157)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            4443333333

>d1ns5a_ c.116.1.3 (A:) Hypothetical protein YbeA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta knot
superfamily: alpha/beta knot
family: YbeA-like
domain: Hypothetical protein YbeA
species: Escherichia coli [TaxId: 562]

Probab=89.47  E-value=0.056  Score=40.75  Aligned_cols=66  Identities=15%  Similarity=0.232  Sum_probs=44.1

Q ss_pred             CeEEEEeccCCcccCCCccCC-------CCCCeEEEECccccCCCCCCC---cceeEEecCCCCCHHHHHHHHHHHHHH
Q psy14698        133 VRKIGTSFSSSKLTKPADLVP-------ADEPIVIVIGAMAHGQVDTDY---TEGNISISNFPLSAALTCTKLCSAFEE  201 (206)
Q Consensus       133 ~~~i~ls~~g~~~v~~~~~~~-------~~~~~~~~IGafp~Gd~~~~~---~~~~isIs~~~Lsa~~v~~ri~~~~E~  201 (206)
                      ..+|+|+++|+ .++-.+|+.       .+..++|+|||- .| ++++.   ++..+|+|+-.++-..+---++.-+-+
T Consensus        67 ~~~I~LDe~Gk-~~sS~~fA~~l~~~~~~g~~i~fiIGGa-~G-~~~~~~~~a~~~lsls~mT~pH~lar~~l~EQlYR  142 (153)
T d1ns5a_          67 NRIVTLDIPGK-PWDTPQLAAELERWKLDGRDVSLLIGGP-EG-LSPACKAAAEQSWSLSALTLPHPLVRVLVAESLYR  142 (153)
T ss_dssp             SEEEEEEEEEE-CCCHHHHHHHHHHHHHHCSCEEEEECBT-TB-CCHHHHHHCSEEECCCSSCCCHHHHHHHHHHHHHH
T ss_pred             CeEEEeecccc-ccChHHHHHHHHHHhhccCcEEEEEEcC-CC-CCHHHHHhhCcEEecccCCchHHHHHHHHHHHHHH
Confidence            36899999997 656555542       246799999985 44 33333   789999999888876554444433333