Diaphorina citri psyllid: psy14776

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020--
MSRHHMSSSHSSRGSCSFSSPMSEDVKPNIQQMALNEPSSSALQFNTVDVKQPPPGFSQSCNHKILVSKSFDCKTGTTQVDNLPSTNVSNQSNPITPQTSTGRTNQYNRWTICPAPMCQISPTQLHLKHPLAGQTNIMSRSMHRDDESNQRRNRSSSRSKNNGYSHRSENSKSSPTRTETNLKRRRSRSKSRSESKSRSEVPRQACARRSRSRSRILSPKRSGEALSNLDKWRMNNCSSEREMTEKFNTLAAMEADQIIEEEKKIWTRSAPADLYYTKRTEDDSYECTQKTRTICDEFESVIQNFVSVKESKPQFDYTANRKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDGCPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDRESETNDIYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccEEEcccccccccccccccEEECcccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHcccccccHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccEEEEEEEccccccccccccEEEEccCEEEEccccccccccccccccccEEEEccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccEEEcccEEEEccccccccccHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHccEEEEccccccccEEEccccccccccccccccEEcccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccEEEEcccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHcccccccccccccccHHccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccHHHHHHHHHcccccHHccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHccc
******************************************LQFNTVDVKQPP********HKILVSKSFDC*******DNLPSTNVSNQ***************YNRWTICPAPMC***********************************************************************************************************************************LAAMEADQIIEEEKKIWTRSAPADLYYTKRTEDDSYECTQKTRTICDEFESVIQNFVSVK************************************************************ELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDGCPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDRESETNDIYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVA*******************************GVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY
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MSRHHMSSSHSSRGSCSFSSPMSEDVKPNIQQMALNEPSSSALQFNTVDVKQPPPGFSQSCNHKILVSKSFDCKTGTTQVDNLPSTNVSNQSNPITPQTSTGRTNQYNRWTICPAPMCQISPTQLHLKHPLAGQTNIMSRSMHRDDESNQRRNRSSSRSKNNGYSHRSENSKSSPTRTETNLKRRRSRSKSRSESKSRSEVPRQACARRSRSRSRILSPKRSGEALSNLDKWRMNNCSSEREMTEKFNTLAAMEADQIIEEEKKIWTRSAPADLYYTKRTEDDSYECTQKTRTICDEFESVIQNFVSVKESKPQFDYTANRKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDGCPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDRESETNDIYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRxxxxxxxxxxxxxxxxxxxxxSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Ribonuclease 3 Ribonuclease III double-stranded (ds) RNA-specific endoribonuclease that is involved in the initial step of microRNA (miRNA) biogenesis. Component of the microprocessor complex that is required to process primary miRNA transcripts (pri-miRNAs) to release precursor miRNA (pre-miRNA) in the nucleus. Within the microprocessor complex, DROSHA cleaves the 3' and 5' strands of a stem-loop in pri-miRNAs (processing center 11 bp from the dsRNA-ssRNA junction) to release hairpin-shaped pre-miRNAs that are subsequently cut by the cytoplasmic DICER to generate mature miRNAs. Involved also in pre-rRNA processing. Cleaves double-strand RNA and does not cleave single-strand RNA. Involved in the formation of GW bodies.confidentQ5HZJ0

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0005488 [MF]bindingprobableGO:0003674
GO:0004525 [MF]ribonuclease III activityprobableGO:0016787, GO:0003824, GO:0004518, GO:0004519, GO:0004540, GO:0004521, GO:0016788, GO:0016893, GO:0016891, GO:0003674
GO:0031054 [BP]pre-miRNA processingprobableGO:0009892, GO:0019222, GO:0050896, GO:0040029, GO:0090304, GO:0031050, GO:0010629, GO:0006807, GO:0070887, GO:0034660, GO:0050789, GO:0044699, GO:0070918, GO:0006139, GO:0051716, GO:0010605, GO:0044260, GO:0071359, GO:0010608, GO:1901360, GO:0010467, GO:0071704, GO:0016458, GO:0065007, GO:0014070, GO:0048519, GO:0010468, GO:0034470, GO:0060255, GO:0009987, GO:0006725, GO:0071310, GO:0044763, GO:0031047, GO:0008152, GO:0042221, GO:0010033, GO:0046483, GO:0016070, GO:0044238, GO:0035194, GO:0035195, GO:0035196, GO:1901699, GO:0034641, GO:0044237, GO:0043170, GO:0043331, GO:0071407, GO:0016441, GO:0008150, GO:1901698, GO:0006396

Prediction of Enzyme Commission Number ?

EC Number ?Description ?Confidence Level ?
3.-.-.-Hydrolases.probable
3.1.-.-Acting on ester bonds.probable
3.1.26.-Endoribonucleases producing 5'-phosphomonoesters.probable
3.1.26.3Ribonuclease III.probable

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2QVW, chain A
Confidence level:very confident
Coverage over the Query: 452-573,587-641,652-777,792,813-927
View the alignment between query and template
View the model in PyMOL
Template: 3N3W, chain A
Confidence level:very confident
Coverage over the Query: 733-763,821-931
View the alignment between query and template
View the model in PyMOL
Template: 3O2R, chain A
Confidence level:very confident
Coverage over the Query: 965-1022
View the alignment between query and template
View the model in PyMOL