Psyllid ID: psy14776

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020--
MSRHHMSSSHSSRGSCSFSSPMSEDVKPNIQQMALNEPSSSALQFNTVDVKQPPPGFSQSCNHKILVSKSFDCKTGTTQVDNLPSTNVSNQSNPITPQTSTGRTNQYNRWTICPAPMCQISPTQLHLKHPLAGQTNIMSRSMHRDDESNQRRNRSSSRSKNNGYSHRSENSKSSPTRTETNLKRRRSRSKSRSESKSRSEVPRQACARRSRSRSRILSPKRSGEALSNLDKWRMNNCSSEREMTEKFNTLAAMEADQIIEEEKKIWTRSAPADLYYTKRTEDDSYECTQKTRTICDEFESVIQNFVSVKESKPQFDYTANRKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDGCPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDRESETNDIYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccEEEcccccccccccccccEEEEcccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHcccccccHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccEEEEEEEccccccccccccEEEEccEEEEEccccccccccccccccccEEEEccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccEEEcccEEEEccccccccccHHHHHHHHHHcccccccHHHHHHHHHccHHHHHHHHHHHccEEEEccccccccEEEccccccccccccccccEEcccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccEEEEccccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccHHccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccHHHHHHHHHcccccHHccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHccc
cccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccHHHcccccHHcHHHHccccEEEEcccHHHHcccccccEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccHHHHccccccccccccccccHHHHHccccccccccccccccccccccccccEEEEEEEEcccccccccccEEEEEcccEEEEEcEEHEcccccccccccEEEEEEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEcccHHHcccccccEHccHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHccEEEEcccccccEEEEEcccccccccccccEEEEcccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHcccccHHHHccccccccHHccccccccccccccHHHHHHHHHHHHcccEEccHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccHHHHHHHHHHccHHHHcEccHHHHHccHHHcHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcHHHHHHHHHHHcccccHHHHHHcccccccccEEEEEEcccccHccEEEEEEEEEHEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHc
msrhhmssshssrgscsfsspmsedvkpniqqmalnepsssalqfntvdvkqpppgfsqscnhkilvsksfdcktgttqvdnlpstnvsnqsnpitpqtstgrtnqynrwticpapmcqisptqlhlkhplagqtnimsrsmhrddesnqrrnrsssrsknngyshrsenskssptrtetnlkrrrsrsksrsesksrsevprqacarrsrsrsrilspkrsgealsnldKWRMNNCSSEREMTEKFNTLAAMEADQIIEEEKKIwtrsapadlyytkrteddsyectqkTRTICDEFESVIQNFVSvkeskpqfdytaNRKKIKRTNRKKIKrkcshcasnptvssgsesssdsssgeedaeeDNWMMELQLKqnhpdrlhpelwfndkgemndgplcrcssksrrsgirhniyagedeqafcnpdtnnadklyhyrvtvspptnflinkptviehdnqefifegfslfshhpleklptckvirFNIQYTIVYIEekvpngftvkdtELFFNYLFHEILELVDLDlksannkdgcpqfhimPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAkskddlstyewqdfadgvkgmiivkpgskpcamrvdqldresetndiypdavhfgsrplqlcfagspdFQKLWKGYVKLRHLVankpkrtaEDKRRLAAKEQRLQEMRTNSKMKRGVTVAIssrgfyrtgIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALthpsyrenfgtnpdharnslsncgvrqpeygdrriHFQNTRKRGINTLINIMSKLGRKvatesnithnERLEFLGDAVVEFITSIHlfhvfpdieegglATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALfldggidvaDQVFSSVlykdnevrfkqwmyypqhplqeqepdgdrqwveqspllkqlqyleyssgvifNHIRLLARVFTTrsmgytnltlgsnqrleflGDTVLQLITSDYLY
msrhhmssshssrgscsfsSPMSEDVKPNIQQMALNEPSSSALQFNTVDVKQPPPGFSQSCNHKILVSKSFDCKTGTTQVdnlpstnvsnqsnpitpqtstgrtnqYNRWTICPAPMCQISPTQLHLKHPLAGQtnimsrsmhrddesnqrrnrsssrsknngyshrsenskssptrtetnlkrrrsrsksrsesksrsevprqacarrsrsrsrilspkrsgealsnldkwrmnNCSSEREMTEKFNTLAAMEADQIIEeekkiwtrsapadlyytkrteddsyecTQKTRTICDEFESVIQNfvsvkeskpqfdytanrkkikrtnrkkikrkcshcasnptvssgsesssdsssGEEDAEEDNWMMELQLKQNHPDRLHPELwfndkgemndGPLCRCSSKSRRSGIRHNiyagedeqafcNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDGCPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLakskddlstyEWQDFADGVKGMIIVKPGSKPCAMRVDQLDRESETNDIYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRhlvankpkrtaedkrrlAAKEqrlqemrtnskmkrgvtvaissRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGtnpdharnslsNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNltlgsnqrleflgdtvlqlitsdyly
msrhhmssshssrgscsfsspmsEDVKPNIQQMALNEPSSSALQFNTVDVKQPPPGFSQSCNHKILVSKSFDCKTGTTQVDNLPSTNVSNQSNPITPQTSTGRTNQYNRWTICPAPMCQISPTQLHLKHPLAGQTNIMSRSMHRDDEsnqrrnrsssrsknnGYSHRSENSKSSPTRTETNLkrrrsrsksrsesksrseVPRQACArrsrsrsrilspkrsGEALSNLDKWRMNNCSSEREMTEKFNTLAAMEADQIIEEEKKIWTRSAPADLYYTKRTEDDSYECTQKTRTICDEFESVIQNFVSVKESKPQFDYTAnrkkikrtnrkkikrkCSHCASNPTVssgsesssdsssgeedaeedNWMMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDGCPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDRESETNDIYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY
**************************************************************HKILVSKSFDC********************************QYNRWTICPAPMCQISPTQLHL**************************************************************************************************************************LAAMEADQIIEEEKKIWTRSAPADLYYTKRTEDDSYECTQKTRTICDEFESVIQNFVSVK***************************************************************************LWF**********************IRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDGCPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRV*********NDIYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVA*******************************GVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENF*************CGVR*PEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQH************WVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDY**
******************************************LQFNTVDVKQPP**************************DNLPSTNVSNQ******************************************************************************************************************************************************************************WTRSAPADLY***************TRTICDEFE**********************************************************************ELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDGCPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDRESETNDIYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLV************************************AISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLG***********NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGS******ELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY
**************************KPNIQQMALNEPSSSALQFNTVDVKQPPPGFSQSCNHKILVSKSFDCKTGTTQVDNLPSTNVSNQSNPITPQTSTGRTNQYNRWTICPAPMCQISPTQLHLKHPLAGQTNIMSR*******************************************************************************KRSGEALSNLDKWRMNNCSSEREMTEKFNTLAAMEADQIIEEEKKIWTRSAPADLYYTKRTEDDSYECTQKTRTICDEFESVIQNFVSVKESKPQFDYTANRKKI****************************************DNWMMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDGCPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDRESETNDIYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQ********QWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY
*******************SPMSEDVKPNIQQMALNEPSSSALQFNTVDVKQPPPGFSQSCNHKILVSKSFDCKTGTTQVDNLPSTNV******************YNRWTICPAPMC*********************************************************************************************************************NCSSEREMTEKFNTLAAMEADQIIEEEKKIWTRSAPADLYYTKRTEDDSYECTQKTRTICDEFESVIQNFVSVKES***FD***NRKKIKRT***********************************EEDNWMMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDGCPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDRESETNDIYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSRHHMSSSHSSRGSCSFSSPMSEDVKPNIQQMALNEPSSSALQFNTVDVKQPPPGFSQSCNHKILVSKSFDCKTGTTQVDNLPSTNVSNQSNPITPQTSTGRTNQYNRWTICPAPMCQISPTQLHLKHPLAGQTNIMSRSMHRDDESNQRRNRSSSRSKNNGYSHRSENSKSSPTRTETNLKRRRSRSKSRSESKSRSEVPRQACARRSRSRSRILSPKRSGEALSNLDKWRMNNCSSEREMTEKFNTLAAMEADQIIEEEKKIWTRSAPADLYYTKRTEDDSYECTQKTRTICDEFESVIQNFVSVKESKPQFDYTANRKKIKRTNRKKIKRKCSHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLKSANNKDGCPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDRESETNDIYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRxxxxxxxxxxxxxxxxxxxxxSKMKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1022 2.2.26 [Sep-21-2011]
Q9NRR4 1374 Ribonuclease 3 OS=Homo sa yes N/A 0.759 0.564 0.499 0.0
Q5HZJ0 1373 Ribonuclease 3 OS=Mus mus yes N/A 0.639 0.476 0.575 0.0
O01326 1086 Ribonuclease 3 OS=Caenorh yes N/A 0.613 0.577 0.373 1e-116
Q61XX9 1061 Ribonuclease 3 OS=Caenorh N/A N/A 0.635 0.611 0.365 1e-113
Q5L6E3237 Ribonuclease 3 OS=Chlamyd yes N/A 0.148 0.641 0.349 3e-16
Q253V2237 Ribonuclease 3 OS=Chlamyd yes N/A 0.101 0.438 0.413 4e-16
Q5R106229 Ribonuclease 3 OS=Idiomar yes N/A 0.124 0.554 0.345 5e-16
Q9Z9C7237 Ribonuclease 3 OS=Chlamyd yes N/A 0.110 0.476 0.380 9e-16
Q9PK97232 Ribonuclease 3 OS=Chlamyd yes N/A 0.161 0.711 0.277 1e-15
Q6MLR5234 Ribonuclease 3 OS=Bdellov yes N/A 0.127 0.555 0.318 2e-15
>sp|Q9NRR4|RNC_HUMAN Ribonuclease 3 OS=Homo sapiens GN=DROSHA PE=1 SV=2 Back     alignment and function desciption
 Score =  830 bits (2143), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/811 (49%), Positives = 557/811 (68%), Gaps = 35/811 (4%)

Query: 230  DKWRMNNCSSEREMTEKFNTLAAMEADQIIEEE---------KKIWTRSAPADLYYTK-- 278
            D+W  N  S +    + + ++   E ++ + ++         K +W R   ++ YY+   
Sbjct: 370  DRWSDNQSSGK---DKNYTSIKEKEPEETMPDKNEEEEEELLKPVWIRCTHSENYYSSDP 426

Query: 279  --RTEDDSYECTQKTRTICDEFESVIQNFVSVKESKPQFDYTANRKKIKRTNRKKIKRKC 336
              +  D +   T + R + D+FE              +      + K  R   +  K K 
Sbjct: 427  MDQVGDSTVVGTSRLRDLYDKFEE-------------ELGSRQEKAKAARPPWEPPKTKL 473

Query: 337  SHCASNPTVSSGSESSSDSSSGEEDAEEDNWMMELQLKQNHPDRLHPELWFNDKGEMNDG 396
                 + + S        + S   D+E  + + E++ K+ HPDRLH ELW+ND G+MNDG
Sbjct: 474  DEDLESSSESECESDEDSTCSSSSDSEVFDVIAEIKRKKAHPDRLHDELWYNDPGQMNDG 533

Query: 397  PLCRCSSKSRRSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIE 456
            PLC+CS+K+RR+GIRH+IY GE+    C P TNNA +L+HYR+TVSPPTNFL ++PTVIE
Sbjct: 534  PLCKCSAKARRTGIRHSIYPGEEAIKPCRPMTNNAGRLFHYRITVSPPTNFLTDRPTVIE 593

Query: 457  HDNQEFIFEGFSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLF 516
            +D+ E+IFEGFS+F+H PL  +P CKVIRFNI YTI +IEE +P  F VK  ELF  +LF
Sbjct: 594  YDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEMMPENFCVKGLELFSLFLF 653

Query: 517  HEILELVDLDLKSANNKDG---CPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPV 573
             +ILEL D +LK    +D    CP+FH MPRFVR L D GKE+L M+++L +       +
Sbjct: 654  RDILELYDWNLKGPLFEDSPPCCPRFHFMPRFVRFLPDGGKEVLSMHQILLYLLRCSKAL 713

Query: 574  ISEKLAKSKDDLSTYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDRESETNDI--YPDAV 631
            + E+   +       EWQ +A+  KGMI+  PG+KP ++R+DQLDRE    D+  +P  V
Sbjct: 714  VPEEEIANMLQWEELEWQKYAEECKGMIVTNPGTKPSSVRIDQLDREQFNPDVITFPIIV 773

Query: 632  HFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSK 691
            HFG RP QL +AG P +QKLWK YVKLRHL+AN PK    DK++LA +E+ LQ++R  + 
Sbjct: 774  HFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQTDKQKLAQREEALQKIRQKNT 833

Query: 692  MKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLL 751
            M+R VTV +SS+GF++TGI  D+ QHAM++PVL  H+R+H+ L  L+  I Y FQ+R LL
Sbjct: 834  MRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQCLMHLDKLIGYTFQDRCLL 893

Query: 752  QLALTHPSYRENFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLG 811
            QLA+THPS+  NFG NPDHARNSLSNCG+RQP+YGDR++H  + RK+GINTLINIMS+LG
Sbjct: 894  QLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGINTLINIMSRLG 953

Query: 812  RKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLA 871
            +   T S I HNERLEFLGDAVVEF+TS+HL+++FP +EEGGLATYR AIVQNQHLA LA
Sbjct: 954  QDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLA 1013

Query: 872  KRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNE 931
            K++ L+ FMLYAHG DLC E +L+HAMANCFEAL+GA++L+G ++ A Q+F  +L+ D +
Sbjct: 1014 KKLELDRFMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPD 1073

Query: 932  VRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRS 991
            +R + W+ YP HPLQ QEP+ DRQ +E SP+L++L   E + GVIF H+RLLAR FT R+
Sbjct: 1074 LR-EVWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRT 1132

Query: 992  MGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 1022
            +G+ +LTLG NQR+EFLGD+++QL+ ++YL+
Sbjct: 1133 VGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 1163
Ribonuclease III double-stranded (ds) RNA-specific endoribonuclease that is involved in the initial step of microRNA (miRNA) biogenesis. Component of the microprocessor complex that is required to process primary miRNA transcripts (pri-miRNAs) to release precursor miRNA (pre-miRNA) in the nucleus. Within the microprocessor complex, DROSHA cleaves the 3' and 5' strands of a stem-loop in pri-miRNAs (processing center 11 bp from the dsRNA-ssRNA junction) to release hairpin-shaped pre-miRNAs that are subsequently cut by the cytoplasmic DICER to generate mature miRNAs. Involved also in pre-rRNA processing. Cleaves double-strand RNA and does not cleave single-strand RNA. Involved in the formation of GW bodies.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 1EC: .EC: 2EC: 6EC: .EC: 3
>sp|Q5HZJ0|RNC_MOUSE Ribonuclease 3 OS=Mus musculus GN=Drosha PE=1 SV=1 Back     alignment and function description
>sp|O01326|RNC_CAEEL Ribonuclease 3 OS=Caenorhabditis elegans GN=drsh-1 PE=2 SV=2 Back     alignment and function description
>sp|Q61XX9|RNC_CAEBR Ribonuclease 3 OS=Caenorhabditis briggsae GN=drsh-1 PE=3 SV=1 Back     alignment and function description
>sp|Q5L6E3|RNC_CHLAB Ribonuclease 3 OS=Chlamydophila abortus (strain S26/3) GN=rnc PE=3 SV=1 Back     alignment and function description
>sp|Q253V2|RNC_CHLFF Ribonuclease 3 OS=Chlamydophila felis (strain Fe/C-56) GN=rnc PE=3 SV=1 Back     alignment and function description
>sp|Q5R106|RNC_IDILO Ribonuclease 3 OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) GN=rnc PE=3 SV=1 Back     alignment and function description
>sp|Q9Z9C7|RNC_CHLPN Ribonuclease 3 OS=Chlamydia pneumoniae GN=rnc PE=3 SV=1 Back     alignment and function description
>sp|Q9PK97|RNC_CHLMU Ribonuclease 3 OS=Chlamydia muridarum (strain MoPn / Nigg) GN=rnc PE=3 SV=1 Back     alignment and function description
>sp|Q6MLR5|RNC_BDEBA Ribonuclease 3 OS=Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529 / HD100) GN=rnc PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1022
189241708 1180 PREDICTED: similar to ribonuclease iii [ 0.761 0.659 0.636 0.0
2700012161063 hypothetical protein TcasGA2_TC016208 [T 0.761 0.731 0.636 0.0
332017989 1326 Ribonuclease 3 [Acromyrmex echinatior] 0.795 0.613 0.609 0.0
307208065 1328 Ribonuclease 3 [Harpegnathos saltator] 0.822 0.633 0.591 0.0
345483564 1423 PREDICTED: ribonuclease 3-like [Nasonia 0.774 0.556 0.607 0.0
322803055 1447 hypothetical protein SINV_00854 [Solenop 0.754 0.532 0.627 0.0
340711421 1306 PREDICTED: ribonuclease 3-like [Bombus t 0.832 0.651 0.581 0.0
350416128 1306 PREDICTED: ribonuclease 3-like [Bombus i 0.832 0.651 0.581 0.0
321475336939 hypothetical protein DAPPUDRAFT_442 [Dap 0.736 0.801 0.640 0.0
383848560 1286 PREDICTED: ribonuclease 3-like [Megachil 0.811 0.644 0.583 0.0
>gi|189241708|ref|XP_967454.2| PREDICTED: similar to ribonuclease iii [Tribolium castaneum] Back     alignment and taxonomy information
 Score = 1061 bits (2744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/800 (63%), Positives = 615/800 (76%), Gaps = 22/800 (2%)

Query: 229  LDKWRMNNCSSEREMTEKFNTLAAMEADQIIEEEKKIWTRSAPADLYYTKRTEDDSY-EC 287
            L KWR N CS+  E++ K + LA ++ ++++E+EK IWTRS P+DLYY K   +      
Sbjct: 141  LSKWRKNYCSTREEVSNKIHELAKVDHEEVLEQEKNIWTRSTPSDLYYRKDESNARVTRA 200

Query: 288  TQKTRTICDEF-ESVIQNFVSVKESKPQFDYTANRKKIKRTNRKKIKRKCSHCASNPTVS 346
            T++   +CD+F + ++     V + KP+++            RK   R C H        
Sbjct: 201  TKRLTQLCDKFNDCLVMRAAKVNKLKPKYEPPP---------RKNRARLCKH-------K 244

Query: 347  SGSESSSDSSSGEEDAEEDNWMMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSR 406
            S   SSS SS  E   EED  M ELQ KQ HPDRLHPE+W+ND GEMNDGPLCRCS KSR
Sbjct: 245  SEESSSSGSSEEELTDEEDCTMEELQRKQQHPDRLHPEMWYNDPGEMNDGPLCRCSIKSR 304

Query: 407  RSGIRHNIYAGEDEQAFCNPDTNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEG 466
            +SGIRH IY GE     C PD+NNA++LYHYR+T+SPPTNFLI  PT+I +D  EFIFEG
Sbjct: 305  KSGIRHGIYPGEKHLEKCVPDSNNAERLYHYRITISPPTNFLIKTPTIIHYDEHEFIFEG 364

Query: 467  FSLFSHHPLEKLPTCKVIRFNIQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLD 526
            FS+FSH PLEKLPTCKVIRFNI+YTI+YIEEK+P+ FTV++ +LF +YLF EILELVDLD
Sbjct: 365  FSMFSHFPLEKLPTCKVIRFNIEYTILYIEEKIPDNFTVRELDLFHDYLFREILELVDLD 424

Query: 527  LKSANNKDGCPQFHIMPRFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLS 586
             K+A + DGC QFH MPRFVREL DNGKE+L M  VL++   S V +I EK  +    ++
Sbjct: 425  FKAAGDVDGCSQFHFMPRFVRELPDNGKEILAMNEVLQYLLDSSVSLIEEKDLEDMIKMT 484

Query: 587  TYEWQDFADGVKGMIIVKPGSKPCAMRVDQLDR----ESETNDIYPDAVHFGSRPLQLCF 642
             YEWQ +AD +KGM++  PG KPC++RVDQLDR    +   +  +P+ VHFG RP QL +
Sbjct: 485  QYEWQSYADEIKGMVVTYPGKKPCSVRVDQLDRNIDLQKPGDYKFPEIVHFGIRPPQLSY 544

Query: 643  AGSPDFQKLWKGYVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISS 702
            AG+PD+QK W+ YVK RHL+AN  K T EDKR+L +KE +LQEMRT  KMKR +TVA+S+
Sbjct: 545  AGNPDYQKAWRDYVKFRHLLANMSKPTFEDKRKLESKENKLQEMRTQGKMKRDITVAVSA 604

Query: 703  RGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRE 762
             GFYRTGIMCD++QHAMLIPVL+CHLRFH SLN+LE+ + YKF+NR LLQLALTHPSYRE
Sbjct: 605  EGFYRTGIMCDIIQHAMLIPVLVCHLRFHHSLNILEESVNYKFKNRALLQLALTHPSYRE 664

Query: 763  NFGTNPDHARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITH 822
            NFGTNPDHARNSL+NCG+RQPEYGDRRIH+ NTRKRGINTLINIMS+ G++  TESNITH
Sbjct: 665  NFGTNPDHARNSLTNCGIRQPEYGDRRIHYMNTRKRGINTLINIMSRFGKQQETESNITH 724

Query: 823  NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
            NERLEFLGDAVVEF++SIHLF+ FPD+EEGGLATYRAAIVQNQHLA LAK + L+ FMLY
Sbjct: 725  NERLEFLGDAVVEFLSSIHLFYTFPDLEEGGLATYRAAIVQNQHLAVLAKTLKLDQFMLY 784

Query: 883  AHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQ 942
            AHGSDLCH++EL+HAMANCFEALMGALFLDGGI+V D+VFS  L+K N    + WM  P 
Sbjct: 785  AHGSDLCHDLELRHAMANCFEALMGALFLDGGINVVDRVFSETLFKVNPDLLEVWMNLPP 844

Query: 943  HPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSN 1002
            HPLQEQEP GDR+W+ +  LL+ L   E S G+ FNHIRLLAR FT RS+GYTNLTLGSN
Sbjct: 845  HPLQEQEPTGDREWIPKFELLQNLTKFEESVGLQFNHIRLLARAFTDRSVGYTNLTLGSN 904

Query: 1003 QRLEFLGDTVLQLITSDYLY 1022
            QRLEFLGDTVLQLI S+YLY
Sbjct: 905  QRLEFLGDTVLQLIASEYLY 924

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|270001216|gb|EEZ97663.1| hypothetical protein TcasGA2_TC016208 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|332017989|gb|EGI58626.1| Ribonuclease 3 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|307208065|gb|EFN85596.1| Ribonuclease 3 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|345483564|ref|XP_001601748.2| PREDICTED: ribonuclease 3-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|322803055|gb|EFZ23143.1| hypothetical protein SINV_00854 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|340711421|ref|XP_003394274.1| PREDICTED: ribonuclease 3-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350416128|ref|XP_003490851.1| PREDICTED: ribonuclease 3-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|321475336|gb|EFX86299.1| hypothetical protein DAPPUDRAFT_442 [Daphnia pulex] Back     alignment and taxonomy information
>gi|383848560|ref|XP_003699917.1| PREDICTED: ribonuclease 3-like [Megachile rotundata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1022
FB|FBgn0026722 1327 drosha "drosha" [Drosophila me 0.640 0.493 0.637 1.3e-246
MGI|MGI:1261425 1373 Drosha "drosha, ribonuclease t 0.637 0.474 0.577 3.8e-221
UNIPROTKB|F1SP38 1328 DROSHA "Uncharacterized protei 0.637 0.490 0.579 4.2e-219
UNIPROTKB|Q9NRR4 1374 DROSHA "Ribonuclease 3" [Homo 0.637 0.474 0.579 8.6e-219
UNIPROTKB|E9PTR3 1373 E9PTR3 "Uncharacterized protei 0.637 0.474 0.577 1.1e-218
UNIPROTKB|F1NQC9 1336 DROSHA "Uncharacterized protei 0.637 0.488 0.577 9.9e-218
UNIPROTKB|F1LQY5 1018 F1LQY5 "Uncharacterized protei 0.637 0.640 0.577 1.3e-217
UNIPROTKB|E1BGY0 1368 DROSHA "Uncharacterized protei 0.637 0.476 0.577 5.4e-217
ZFIN|ZDB-GENE-070209-23 1289 rnasen "ribonuclease type III, 0.764 0.605 0.503 2e-214
UNIPROTKB|F1PJL5 627 DROSHA "Uncharacterized protei 0.405 0.660 0.599 2.1e-139
FB|FBgn0026722 drosha "drosha" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 2289 (810.8 bits), Expect = 1.3e-246, Sum P(2) = 1.3e-246
 Identities = 426/668 (63%), Positives = 521/668 (77%)

Query:   368 MMELQLKQNHPDRLHPELWFNDKGEMNDGPLCRCSSKSRRSGIRHNIYAGEDEQAFCNPD 427
             M EL  K  HP R+H +LW ND GEMNDGPLCRCS+KSRR GIRH IY GE     C+P+
Sbjct:   364 MEELSRKVQHPQRVHADLWHNDAGEMNDGPLCRCSAKSRRIGIRHGIYPGETGYKLCDPN 423

Query:   428 TNNADKLYHYRVTVSPPTNFLINKPTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVIRFN 487
             +NNA KL+HYR+++SPPTNFL   PT+I+HD  EF+FEGFSL SH  L  LP CKVIRFN
Sbjct:   424 SNNAGKLFHYRISISPPTNFLTKTPTIIKHDEHEFLFEGFSLLSHVRLSDLPVCKVIRFN 483

Query:   488 IQYTIVYIEEKVPNGFTVKDTELFFNYLFHEILELVDLDLK----SANNKDGCPQFHIMP 543
             I+YTI Y EEK+P  FT+ + ++FF YLFHE+LELVD +L     S N ++ CP FH  P
Sbjct:   484 IEYTIEYEEEKMPENFTIHELDIFFKYLFHELLELVDFNLMPNLPSGNVEESCPAFHFFP 543

Query:   544 RFVRELKDNGKELLPMYRVLEFFTSSFVPVISEKLAKSKDDLSTYEWQDFADGVKGMIIV 603
             RFVR+L DNGKE+L M  VL +   +   ++  +     + +S  EWQ++ D +KGM++ 
Sbjct:   544 RFVRDLPDNGKEVLAMVEVLRYLLDNSAQLVERQQLLHLNQISQSEWQNYVDFIKGMLVT 603

Query:   604 KPGSKPCAMRVDQLDRES---------ETNDIYPDAVHFGSRPLQLCFAGSPDFQKLWKG 654
             KPG KPC++RVDQLDR +         ET   +P  VHFG    QL +AG+P++QK W+ 
Sbjct:   604 KPGYKPCSLRVDQLDRNNSDLPECVDRETGISHPAIVHFGICHPQLSYAGNPEYQKAWRE 663

Query:   655 YVKLRHLVANKPKRTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDM 714
             YVK RHL+AN  K + +DKR+L  KEQRLQEMRT  +MKR +TVAISS GFYRTGIMCD+
Sbjct:   664 YVKYRHLMANMSKPSFKDKRKLEEKEQRLQEMRTQGRMKRNITVAISSEGFYRTGIMCDV 723

Query:   715 VQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHARNS 774
             VQHAMLIPVL  HLRFH+SL++LE+ I Y+F+NRYLLQLALTHPSY+EN+GTNPDHARNS
Sbjct:   724 VQHAMLIPVLTGHLRFHKSLDLLEESIGYRFKNRYLLQLALTHPSYKENYGTNPDHARNS 783

Query:   775 LSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVV 834
             L+NCG+RQPEYGDR+IH+ NTRKRGINTL++IMS+ G++  T SNITHNERLEFLGDAVV
Sbjct:   784 LTNCGIRQPEYGDRKIHYMNTRKRGINTLVSIMSRFGKEHETVSNITHNERLEFLGDAVV 843

Query:   835 EFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVEL 894
             EF++SIHLF +FP++EEGGLATYRAAIVQNQHLA LAK++ LE+FMLYAHGSDLCHE+EL
Sbjct:   844 EFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFMLYAHGSDLCHELEL 903

Query:   895 KHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDR 954
             +HAMANCFEALMGAL LDGGI VAD+VF+  L++ +E     W   P+HPLQEQEP GDR
Sbjct:   904 RHAMANCFEALMGALLLDGGIKVADEVFTDALFRQDEKLLSIWKNLPEHPLQEQEPLGDR 963

Query:   955 QWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQ 1014
               ++   +LK+L   E S G+ F HIRLLAR FT RS+G+T+LTLGSNQRLEFLGDTVLQ
Sbjct:   964 SCIDSYRVLKELTKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQ 1023

Query:  1015 LITSDYLY 1022
             LI S+YLY
Sbjct:  1024 LICSEYLY 1031
GO:0031053 "primary miRNA processing" evidence=ISS;IMP
GO:0005634 "nucleus" evidence=ISS
GO:0004525 "ribonuclease III activity" evidence=ISS;NAS
GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS
GO:0016075 "rRNA catabolic process" evidence=IEA
GO:0022008 "neurogenesis" evidence=IMP
GO:0030727 "germarium-derived female germ-line cyst formation" evidence=IMP
GO:0007294 "germarium-derived oocyte fate determination" evidence=IMP
MGI|MGI:1261425 Drosha "drosha, ribonuclease type III" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1SP38 DROSHA "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NRR4 DROSHA "Ribonuclease 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E9PTR3 E9PTR3 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1NQC9 DROSHA "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1LQY5 F1LQY5 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1BGY0 DROSHA "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070209-23 rnasen "ribonuclease type III, nuclear" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1PJL5 DROSHA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5HZJ0RNC_MOUSE3, ., 1, ., 2, 6, ., 30.57570.63990.4763yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.26.30.824
3rd Layer3.1.260.766

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1022
cd00593133 cd00593, RIBOc, RIBOc 2e-40
smart00535129 smart00535, RIBOc, Ribonuclease III family 4e-40
PRK00102229 PRK00102, rnc, ribonuclease III; Reviewed 1e-35
COG0571235 COG0571, Rnc, dsRNA-specific ribonuclease [Transcr 3e-32
TIGR02191220 TIGR02191, RNaseIII, ribonuclease III, bacterial 1e-31
pfam0063691 pfam00636, Ribonuclease_3, Ribonuclease III domain 5e-29
PRK12372 413 PRK12372, PRK12372, ribonuclease III; Reviewed 6e-14
PRK12371235 PRK12371, PRK12371, ribonuclease III; Reviewed 2e-13
PRK14718 467 PRK14718, PRK14718, ribonuclease III; Provisional 2e-13
PRK00102 229 PRK00102, rnc, ribonuclease III; Reviewed 7e-12
COG0571 235 COG0571, Rnc, dsRNA-specific ribonuclease [Transcr 9e-12
cd00593133 cd00593, RIBOc, RIBOc 1e-09
smart00535129 smart00535, RIBOc, Ribonuclease III family 4e-08
TIGR02191 220 TIGR02191, RNaseIII, ribonuclease III, bacterial 1e-07
TIGR01642509 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la 1e-04
pfam0063691 pfam00636, Ribonuclease_3, Ribonuclease III domain 6e-04
TIGR01642509 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la 0.001
pfam08648158 pfam08648, DUF1777, Protein of unknown function (D 0.001
>gnl|CDD|238333 cd00593, RIBOc, RIBOc Back     alignment and domain information 
 Score =  144 bits (366), Expect = 2e-40
 Identities = 47/120 (39%), Positives = 69/120 (57%)

Query: 812 RKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLA 871
              A E    +NERLEFLGDAV+E + + +LF  FPD+ EG L   R+A+V N+ LA LA
Sbjct: 10  PSYANEHGRFNNERLEFLGDAVLELVVTEYLFKKFPDLSEGDLTRLRSALVSNETLARLA 69

Query: 872 KRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNE 931
           + +GL  ++    G +          +A+ FEAL+GA++LDGG + A +    +L    E
Sbjct: 70  RELGLGKYLRLGKGEEKSGGRLRPKILADVFEALIGAIYLDGGFEAARKFLLRLLGPLIE 129

Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing. Length = 133
>gnl|CDD|197778 smart00535, RIBOc, Ribonuclease III family Back     alignment and domain information
>gnl|CDD|234633 PRK00102, rnc, ribonuclease III; Reviewed Back     alignment and domain information
>gnl|CDD|223644 COG0571, Rnc, dsRNA-specific ribonuclease [Transcription] Back     alignment and domain information
>gnl|CDD|233772 TIGR02191, RNaseIII, ribonuclease III, bacterial Back     alignment and domain information
>gnl|CDD|216036 pfam00636, Ribonuclease_3, Ribonuclease III domain Back     alignment and domain information
>gnl|CDD|237081 PRK12372, PRK12372, ribonuclease III; Reviewed Back     alignment and domain information
>gnl|CDD|171444 PRK12371, PRK12371, ribonuclease III; Reviewed Back     alignment and domain information
>gnl|CDD|173181 PRK14718, PRK14718, ribonuclease III; Provisional Back     alignment and domain information
>gnl|CDD|234633 PRK00102, rnc, ribonuclease III; Reviewed Back     alignment and domain information
>gnl|CDD|223644 COG0571, Rnc, dsRNA-specific ribonuclease [Transcription] Back     alignment and domain information
>gnl|CDD|238333 cd00593, RIBOc, RIBOc Back     alignment and domain information
>gnl|CDD|197778 smart00535, RIBOc, Ribonuclease III family Back     alignment and domain information
>gnl|CDD|233772 TIGR02191, RNaseIII, ribonuclease III, bacterial Back     alignment and domain information
>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor Back     alignment and domain information
>gnl|CDD|216036 pfam00636, Ribonuclease_3, Ribonuclease III domain Back     alignment and domain information
>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor Back     alignment and domain information
>gnl|CDD|219953 pfam08648, DUF1777, Protein of unknown function (DUF1777) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1022
KOG1817|consensus 533 100.0
COG0571235 Rnc dsRNA-specific ribonuclease [Transcription] 99.97
PRK12371235 ribonuclease III; Reviewed 99.97
PRK14718 467 ribonuclease III; Provisional 99.96
PRK12372 413 ribonuclease III; Reviewed 99.96
PRK00102229 rnc ribonuclease III; Reviewed 99.95
TIGR02191220 RNaseIII ribonuclease III, bacterial. This family 99.94
PF14622128 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_ 99.94
smart00535129 RIBOc Ribonuclease III family. 99.91
cd00593133 RIBOc RIBOc. Ribonuclease III C terminal domain. T 99.9
KOG1817|consensus533 99.84
PF00636114 Ribonuclease_3: Ribonuclease III domain; InterPro: 99.83
KOG0701|consensus 1606 99.79
KOG0701|consensus 1606 99.56
COG0571 235 Rnc dsRNA-specific ribonuclease [Transcription] 99.46
PRK12371 235 ribonuclease III; Reviewed 99.39
PRK00102 229 rnc ribonuclease III; Reviewed 99.31
KOG3769|consensus333 98.74
COG1939132 Ribonuclease III family protein [Replication, reco 96.82
PF11469120 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR02 81.1
>KOG1817|consensus Back     alignment and domain information 
Probab=100.00  E-value=8.2e-66  Score=564.85  Aligned_cols=331  Identities=60%  Similarity=0.999  Sum_probs=323.5

Q ss_pred             eecceEEEEecCcccccCcChHHHHHHhhhhhhhhhhhhhHHHHHHHHHhCCCcCCHHHHHHHhhCCCcccccCCCCccc
Q psy14776        692 MKRGVTVAISSRGFYRTGIMCDMVQHAMLIPVLICHLRFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYRENFGTNPDHA  771 (1022)
Q Consensus       692 ~~r~i~~~Ls~e~f~~tgI~~Dv~q~alllPsii~~ir~~~~L~~LE~~LGY~FkD~~LL~eALTHpSy~~~~G~~Pd~a  771 (1022)
                      |+|++++++|++||+.|||++||+|||||+|+++|||||+.+|..||+.|||+|+|+.||++|||||||..+||++||||
T Consensus         1 ~~r~~~~~~~~~gf~~tg~~~dv~~h~~m~~~~~~hir~~~~l~~~e~~i~y~f~~r~~~~lal~h~s~~~~~Gt~~dh~   80 (533)
T KOG1817|consen    1 MRRNVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQSLDHLEELIGYTFQDRCLLQLALTHPSHKLNYGTNPDHA   80 (533)
T ss_pred             CCcceeEeeccchHHHhCcchHHHHHHHHHHHHhhhhhHHHhHHHHHHHhCeeecchHHHHHHhcCchHHhhCCCCchhh
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCCCCCccchhcccccccccchhHHHHhhhcccccccCcCccchHHHHhhhhHhhHHHHHhhhhhCCCCCc
Q psy14776        772 RNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEE  851 (1022)
Q Consensus       772 ~nsltncg~r~pe~Gd~~ih~~~~rKrGi~tlInimsrmgkn~es~s~i~nYERLEFLGDAVLKfiVS~~LF~kyP~lsE  851 (1022)
                      +|++||||+|+|+||++++|++..+++||+++|+||+++|...++.+.+.+|||||||||++.+++++.++|..+|...+
T Consensus        81 kns~tncg~r~~~yg~~~~~~~~kr~~gin~li~imk~l~~~~~~~s~i~hnErle~lgdavve~~ss~hl~~~~~r~~e  160 (533)
T KOG1817|consen   81 KNSLTNCGIRQPKYGDRKEHIMTKRKLGINTLINIMKRLGVIQPTHSVIKHNERLEFLGDAVVELLSSNHLYFMFPRLEE  160 (533)
T ss_pred             hccccccCcCCcccchhHHHHHHHHHhhhhHHHHHHhhccCCCCchhHhHHHHHHHHHhhccHHHHHHHHHHHccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHhcHHHHHHHHHHcCCcchhcccCCCccccccccchhhHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcChH
Q psy14776        852 GGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNE  931 (1022)
Q Consensus       852 G~LT~lRsaLVSN~~LA~iAkkLGL~eyIr~~~g~~l~~~~~~~KvLADVfEALIGAIYLDsGle~A~kfL~~Ll~~~d~  931 (1022)
                      |.|...|.++|.|++|+.+|+++.++.|+.+..|.+++......+++|++|||+|||+|+|+|...+..++...++..++
T Consensus       161 ggLatyrta~vqnr~la~lakklrkd~fl~yahg~dl~~~~E~Kha~an~feavi~a~~l~g~~~~~e~lfs~~~~~~ep  240 (533)
T KOG1817|consen  161 GGLATYRTAIVQNRHLAKLAKKLRKDEFLLYAHGYDLCFETELKHAMANCFEAVIGAKYLDGGLVVAEKLFSRALFVYEP  240 (533)
T ss_pred             cchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhHHHHHhcchHHHHHHHHHHhhccCc
Confidence            99999999999999999999999999999999999999888999999999999999999999999999999999988888


Q ss_pred             HHhhhhcCCCCCCCcccCCCCcCcccccchhHHHHHHHHHHhCCCCCCHHHHHHhhcCCCCCCCCCCCCCchhhhhhhhh
Q psy14776        932 VRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDT 1011 (1022)
Q Consensus       932 dLl~~W~~~Pk~pLQE~~P~~dR~~i~~~p~l~~l~~lE~~LGY~Fkn~~LL~eAfTH~Sy~~~~~~~~~yQRLEFLGDA 1011 (1022)
                      .+.+.|...|.+++|+.+|.++|..+..+|.+..+.++|+++|..|.++++|.+|||-+|.+++..+.++|||||||||+
T Consensus       241 vlee~w~~~~ehelq~~ep~gDr~~~~~~Ppllp~~~~e~~~g~vF~Hirlla~aft~rs~~~n~Lt~gHNqRLEFLGDS  320 (533)
T KOG1817|consen  241 VLEEEWEHEPEHELQEQEPAGDRVLITKYPPLLPLTQFEEIIGIVFIHIRLLARAFTLRSIPFNHLTLGHNQRLEFLGDS  320 (533)
T ss_pred             hhhccccCCCcCcccccCCCccccccccCCCCCchhhHHHHHHHHHHHHHHHHHHhhccCCCchhhhhhhhHHHHHhHHH
Confidence            89999999999999999999999999899998899999999999999999999999999999888899999999999999


Q ss_pred             hhhHHHHHhcC
Q psy14776       1012 VLQLITSDYLY 1022 (1022)
Q Consensus      1012 VLdlvVseyLY 1022 (1022)
                      ||++++++|||
T Consensus       321 ilqlv~T~ily  331 (533)
T KOG1817|consen  321 ILQLVMTEILY  331 (533)
T ss_pred             HHHHHHHHHHH
Confidence            99999999997

>COG0571 Rnc dsRNA-specific ribonuclease [Transcription] Back     alignment and domain information
>PRK12371 ribonuclease III; Reviewed Back     alignment and domain information
>PRK14718 ribonuclease III; Provisional Back     alignment and domain information
>PRK12372 ribonuclease III; Reviewed Back     alignment and domain information
>PRK00102 rnc ribonuclease III; Reviewed Back     alignment and domain information
>TIGR02191 RNaseIII ribonuclease III, bacterial Back     alignment and domain information
>PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B Back     alignment and domain information
>smart00535 RIBOc Ribonuclease III family Back     alignment and domain information
>cd00593 RIBOc RIBOc Back     alignment and domain information
>KOG1817|consensus Back     alignment and domain information
>PF00636 Ribonuclease_3: Ribonuclease III domain; InterPro: IPR000999 Prokaryotic ribonuclease III (3 Back     alignment and domain information
>KOG0701|consensus Back     alignment and domain information
>KOG0701|consensus Back     alignment and domain information
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription] Back     alignment and domain information
>PRK12371 ribonuclease III; Reviewed Back     alignment and domain information
>PRK00102 rnc ribonuclease III; Reviewed Back     alignment and domain information
>KOG3769|consensus Back     alignment and domain information
>COG1939 Ribonuclease III family protein [Replication, recombination, and repair] Back     alignment and domain information
>PF11469 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR021568 This archaeal family of proteins has no known function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1022
3n3w_A248 2.2 Angstrom Resolution Crystal Structure Of Nuclea 1e-12
3o2r_D144 Structural Flexibility In Region Involved In Dimer 2e-12
3o2r_A170 Structural Flexibility In Region Involved In Dimer 2e-12
2a11_A242 Crystal Structure Of Nuclease Domain Of Ribonuclase 2e-12
1o0w_A252 Crystal Structure Of Ribonuclease Iii (Tm1102) From 3e-11
2ffl_A 756 Crystal Structure Of Dicer From Giardia Intestinali 5e-06
1jfz_A154 Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii En 1e-05
1i4s_A147 Crystal Structure Of Rnase Iii Endonuclease Domain 1e-05
1yyk_A221 Crystal Structure Of Rnase Iii From Aquifex Aeolicu 3e-05
3rv0_A341 Crystal Structure Of K. Polysporus Dcr1 Without The 4e-05
3rv1_A246 Crystal Structure Of The N-Terminal And Rnase Iii D 6e-05
1yz9_A221 Crystal Structure Of Rnase Iii Mutant E110q From Aq 6e-05
1rc7_A220 Crystal Structure Of Rnase Iii Mutant E110k From Aq 8e-05
1yyo_A221 Crystal Structure Of Rnase Iii Mutant E110k From Aq 8e-05
2ez6_A221 Crystal Structure Of Aquifex Aeolicus Rnase Iii (d4 1e-04
3c4t_A265 Structure Of Rnaseiiib And Dsrna Binding Domains Of 6e-04
>pdb|3N3W|A Chain A, 2.2 Angstrom Resolution Crystal Structure Of Nuclease Domain Ribonuclase Iii (Rnc) From Campylobacter Jejuni Length = 248 Back     alignment and structure 
Iteration: 1

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/127 (31%), Positives = 68/127 (53%), Gaps = 12/127 (9%)
Query: 822 HNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 881
           +NERLEFLGDAV++ +   +LFH F    EG L+  RAA+V  +  A +A  + L DF+L
Sbjct: 59  NNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIL 118
Query: 882 YAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVAD------------QVFSSVLYKD 929
            +   +     E    +++  EA++GA+ L+ G + A             Q+ + +L KD
Sbjct: 119 MSVAEENNGGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKD 178
Query: 930 NEVRFKQ 936
            + + ++
Sbjct: 179 YKTKLQE 185
>pdb|3O2R|A Chain A, Structural Flexibility In Region Involved In Dimer Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc) From Campylobacter Jejuni Length = 170 Back     alignment and structure
>pdb|2A11|A Chain A, Crystal Structure Of Nuclease Domain Of Ribonuclase Iii From Mycobacterium Tuberculosis Length = 242 Back     alignment and structure
>pdb|1O0W|A Chain A, Crystal Structure Of Ribonuclease Iii (Tm1102) From Thermotoga Maritima At 2.0 A Resolution Length = 252 Back     alignment and structure
>pdb|2FFL|A Chain A, Crystal Structure Of Dicer From Giardia Intestinalis Length = 756 Back     alignment and structure
>pdb|1JFZ|A Chain A, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.10 Angstrom Resolution Length = 154 Back     alignment and structure
>pdb|1I4S|A Chain A, Crystal Structure Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.15 Angstrom Resolution Length = 147 Back     alignment and structure
>pdb|1YYK|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus Complexed With Double-Stranded Rna At 2.5-Angstrom Resolution Length = 221 Back     alignment and structure
>pdb|3RV0|A Chain A, Crystal Structure Of K. Polysporus Dcr1 Without The C-Terminal Dsrbd Length = 341 Back     alignment and structure
>pdb|3RV1|A Chain A, Crystal Structure Of The N-Terminal And Rnase Iii Domains Of K. Polysporus Dcr1 E224q Mutant Length = 246 Back     alignment and structure
>pdb|1YZ9|A Chain A, Crystal Structure Of Rnase Iii Mutant E110q From Aquifex Aeolicus Complexed With Double Stranded Rna At 2.1- Angstrom Resolution Length = 221 Back     alignment and structure
>pdb|1RC7|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex Aeolicus Complexed With Ds-Rna At 2.15 Angstrom Resolution Length = 220 Back     alignment and structure
>pdb|1YYO|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex Aeolicus Complexed With Double-stranded Rna At 2.9- Angstrom Resolution Length = 221 Back     alignment and structure
>pdb|2EZ6|A Chain A, Crystal Structure Of Aquifex Aeolicus Rnase Iii (d44n) Complexed With Product Of Double-stranded Rna Processing Length = 221 Back     alignment and structure
>pdb|3C4T|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse Dicer Length = 265 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1022
1o0w_A252 Ribonuclease III, RNAse III; TM1102, structural ge 3e-37
1o0w_A 252 Ribonuclease III, RNAse III; TM1102, structural ge 6e-12
2a11_A242 Ribonuclease III, RNAse III; nuclease domain, stru 9e-33
2a11_A 242 Ribonuclease III, RNAse III; nuclease domain, stru 3e-12
3rv0_A341 K. polysporus DCR1; RNAse III enzyme, RNA binding 2e-31
3rv0_A 341 K. polysporus DCR1; RNAse III enzyme, RNA binding 1e-09
2nug_A221 Ribonuclease III, RNAse III; dsRNA, RNA interferen 5e-31
2nug_A 221 Ribonuclease III, RNAse III; dsRNA, RNA interferen 2e-11
2nug_A221 Ribonuclease III, RNAse III; dsRNA, RNA interferen 3e-06
3rv1_A246 K. polysporus DCR1; RNAse III enzyme, RNA binding 7e-31
3rv1_A246 K. polysporus DCR1; RNAse III enzyme, RNA binding 1e-09
3o2r_A170 Ribonuclease III; structural genomics, center for 3e-30
3o2r_A170 Ribonuclease III; structural genomics, center for 3e-12
3o2r_A170 Ribonuclease III; structural genomics, center for 4e-06
3n3w_A248 Ribonuclease III; nuclease domain, ribonuclase III 8e-30
3n3w_A 248 Ribonuclease III; nuclease domain, ribonuclase III 2e-13
3n3w_A248 Ribonuclease III; nuclease domain, ribonuclase III 6e-06
3c4b_A265 Endoribonuclease dicer; RNAse, dsRNA binding prote 1e-27
3c4b_A 265 Endoribonuclease dicer; RNAse, dsRNA binding prote 2e-13
2qvw_A756 GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral 2e-27
2qvw_A 756 GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral 1e-26
2qvw_A 756 GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral 9e-11
2qvw_A756 GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral 5e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1u61_A138 Hypothetical protein; structural genomics, PSI, pr 2e-06
2gsl_A137 Hypothetical protein; alpha-helical protein, struc 2e-04
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Length = 252 Back     alignment and structure
 Score =  139 bits (353), Expect = 3e-37
 Identities = 46/207 (22%), Positives = 74/207 (35%), Gaps = 64/207 (30%)

Query: 729 RFHRSLNVLEDRIQYKFQNRYLLQLALTHPSYR-ENFGTNPDHARNSLSNCGVRQPEYGD 787
              + +   +      F+N  LL  AL H SY  E                         
Sbjct: 16  SERKIVEEFQKETGINFKNEELLFRALCHSSYANEQ------------------------ 51

Query: 788 RRIHFQNTRKRGINTLINIMSKLGRKVATESNITHNERLEFLGDAVVEFITSIHLFHVFP 847
                                      A   ++  NE+LEFLGDAV+E      L+  +P
Sbjct: 52  -------------------------NQAGRKDVESNEKLEFLGDAVLELFVCEILYKKYP 86

Query: 848 DIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHA-------MAN 900
           + E G LA  ++A    + LA +++++ L  F+    G       E K         +A+
Sbjct: 87  EAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLFLGKG-------EEKTGGRDRDSILAD 139

Query: 901 CFEALMGALFLDGGIDVADQVFSSVLY 927
            FEAL+ A++LD G +   ++F     
Sbjct: 140 AFEALLAAIYLDQGYEKIKELFEQEFE 166
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Length = 252 Back     alignment and structure
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Length = 242 Back     alignment and structure
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Length = 242 Back     alignment and structure
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Length = 341 Back     alignment and structure
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Length = 341 Back     alignment and structure
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Length = 221 Back     alignment and structure
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Length = 221 Back     alignment and structure
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Length = 221 Back     alignment and structure
>3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora} Length = 246 Back     alignment and structure
>3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora} Length = 246 Back     alignment and structure
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B* Length = 170 Back     alignment and structure
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B* Length = 170 Back     alignment and structure
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B* Length = 170 Back     alignment and structure
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Length = 248 Back     alignment and structure
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Length = 248 Back     alignment and structure
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Length = 248 Back     alignment and structure
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Length = 265 Back     alignment and structure
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Length = 265 Back     alignment and structure
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Length = 756 Back     alignment and structure
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Length = 756 Back     alignment and structure
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Length = 756 Back     alignment and structure
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Length = 756 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1u61_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 2.15A {Bacillus cereus} SCOP: a.149.1.1 Length = 138 Back     alignment and structure
>2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein STR initiative; 2.60A {Fusobacterium nucleatum subsp} Length = 137 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1022
2qvw_A 756 GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral 100.0
3o2r_A170 Ribonuclease III; structural genomics, center for 99.97
3n3w_A248 Ribonuclease III; nuclease domain, ribonuclase III 99.97
3c4b_A265 Endoribonuclease dicer; RNAse, dsRNA binding prote 99.96
1o0w_A252 Ribonuclease III, RNAse III; TM1102, structural ge 99.96
2a11_A242 Ribonuclease III, RNAse III; nuclease domain, stru 99.96
2nug_A221 Ribonuclease III, RNAse III; dsRNA, RNA interferen 99.95
3rv1_A246 K. polysporus DCR1; RNAse III enzyme, RNA binding 99.95
3rv0_A341 K. polysporus DCR1; RNAse III enzyme, RNA binding 99.95
2qvw_A756 GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral 99.91
1u61_A138 Hypothetical protein; structural genomics, PSI, pr 99.76
2gsl_A137 Hypothetical protein; alpha-helical protein, struc 99.67
3c4b_A 265 Endoribonuclease dicer; RNAse, dsRNA binding prote 99.43
3o2r_A170 Ribonuclease III; structural genomics, center for 99.42
3n3w_A 248 Ribonuclease III; nuclease domain, ribonuclase III 99.38
1o0w_A 252 Ribonuclease III, RNAse III; TM1102, structural ge 99.29
2a11_A 242 Ribonuclease III, RNAse III; nuclease domain, stru 99.28
3rv1_A246 K. polysporus DCR1; RNAse III enzyme, RNA binding 99.24
3rv0_A 341 K. polysporus DCR1; RNAse III enzyme, RNA binding 99.12
2nug_A 221 Ribonuclease III, RNAse III; dsRNA, RNA interferen 96.56
1ztd_A133 Hypothetical protein PFU-631545-001; structural ge 85.77
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Back     alignment and structure
Probab=100.00  E-value=2e-42  Score=411.67  Aligned_cols=389  Identities=17%  Similarity=0.229  Sum_probs=233.3

Q ss_pred             CeEEEeCCeEEEEeeeeeeecCCCCCCCCccee--eecceeEEE-eeccCCCCCCCccc---hhhHHHHHHHHHhccccc
Q psy14776        452 PTVIEHDNQEFIFEGFSLFSHHPLEKLPTCKVI--RFNIQYTIV-YIEEKVPNGFTVKD---TELFFNYLFHEILELVDL  525 (1022)
Q Consensus       452 ~T~i~~~~~~y~FeGFsllsH~~l~~~P~c~~~--r~ni~y~i~-~ieE~~P~~F~~~~---ldlf~~ylF~ellel~d~  525 (1022)
                      .|++.-.|-++    |-||.-.|||.+|.+++-  |.-+.-+|. ++...+-  ++-..   +..|+.|||+.||-+..-
T Consensus        10 ~~~~~~~~~~~----~~~l~~~~l~~~~~f~~~~~~g~~~v~v~~~~~~~~~--l~~~q~~~~~~Fq~~lf~~~l~~~~~   83 (756)
T 2qvw_A           10 CTVVTTRGPSH----WLLLLDTHLGTLPGFKVSAGRGLPAAEVYFEAGPRVS--LSRTDATIVAVYQSILFQLLGPTFPA   83 (756)
T ss_dssp             EEEECSSCEEE----EEEEESSCCCSCCCEEECSBTTBCCEEEECCBCCCCC--CCHHHHHHHHHHHHHHHHHHCTTSCS
T ss_pred             eEEEecCCcce----eeeeecCCCCCCCCceeecCCCceeEEEEeecCCccc--cCHHHHHHHHHHHHHHHHHHhcccch
Confidence            45555455443    578888899999999875  555666776 3544322  44333   566999999999774321


Q ss_pred             ccc-------------C--CCCCCCCCeEEeeeceeeeccCCccccccHHHHH-HHHHhc-CCcccCHHhhhhhhccChh
Q psy14776        526 DLK-------------S--ANNKDGCPQFHIMPRFVRELKDNGKELLPMYRVL-EFFTSS-FVPVISEKLAKSKDDLSTY  588 (1022)
Q Consensus       526 ~l~-------------~--~~~~~~cp~fH~mPRFv~~l~d~~~ellsm~~VL-~yll~~-~~~l~~~~~l~~~~~~~~~  588 (1022)
                      .|.             |  ..+...++.|=|+|=+    ...+.  +--.-|+ .+-+.+ .+..             .+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yll~Pl~----~~~~~--iDw~~v~~s~~~~~~~~~~-------------~~  144 (756)
T 2qvw_A           84 SWTEIGATMPHNEYTFPRFISNPPQFATLAFLPLL----SPTSP--LDLRALMVTAQLMCDAKRL-------------SD  144 (756)
T ss_dssp             CHHHHHHTCCGGGSSSTTCCCCCSCCCCEEEEEES----STTCC--CCSHHHHHHHHHHHTCCCG-------------GG
T ss_pred             hhhhccccccccccccccccCCCcccceEEEEeCC----CCCCc--eehhhhhhhhhhccccCCC-------------cc
Confidence            111             0  0112222345566632    11111  1112221 111111 1111             12


Q ss_pred             HHHh---hhhccceEEEeCCCCCccceeccccccccCCCccccceeeeccCCCcccCCCChhHHHHHHHHHHHHHHHhCC
Q psy14776        589 EWQD---FADGVKGMIIVKPGSKPCAMRVDQLDRESETNDIYPDAVHFGSRPLQLCFAGSPDFQKLWKGYVKLRHLVANK  665 (1022)
Q Consensus       589 ~w~~---~~~~~k~~ivt~p~~kP~a~RvDqldr~~~~~~~~p~ivH~g~rp~~~sy~~~p~yqk~~r~~~klr~l~~n~  665 (1022)
                      .|.+   ....+.|+||+-|-..+...|||.+|.+..-...||.      ++...|          +.+|.|-++-+.-.
T Consensus       145 ~~~d~~~~~~~l~g~vV~t~ynn~r~Y~i~~id~d~~P~S~F~~------~~~~~T----------y~dYYk~ky~i~I~  208 (756)
T 2qvw_A          145 EYTDYSTLSASLHGRMVATPEISWSLYVVLGIDSTQTSLSYFTR------ANESIT----------YMRYYATAHNIHLR  208 (756)
T ss_dssp             C------CTTTSTTCEEEETTTTTEEEEEEEEEEEEETTSEEEE------TTEEEE----------HHHHHHHTTCCCCS
T ss_pred             ccccchhhHHHhCCCEEecCCCCceEEEEEEecCCCCCCCcCCC------CCCCCC----------HHHHHHHHcCcccc
Confidence            2443   3457788888776655578899888865543333431      111112          22344433321110


Q ss_pred             CC----CCHHHHHHHHHHHHHHHHHhhcCceecceEEEEecCcccccCcChHHHH--HHhhhhhhhhhhhhhH-HHHHHH
Q psy14776        666 PK----RTAEDKRRLAAKEQRLQEMRTNSKMKRGVTVAISSRGFYRTGIMCDMVQ--HAMLIPVLICHLRFHR-SLNVLE  738 (1022)
Q Consensus       666 ~k----~~~~dk~kl~~k~~~L~~~r~~~~~~r~i~~~Ls~e~f~~tgI~~Dv~q--~alllPsii~~ir~~~-~L~~LE  738 (1022)
                      ..    .....+.++...  ++..-+..+.. ..-.++|+||-|..+||+.+++.  .+.++|+|+++|+... .+++++
T Consensus       209 d~~QPLL~~~~~~~~~~~--r~~~~~~~~~~-~~~~v~L~PELC~vt~Lp~sl~~~~~~~~lPsil~rie~ll~a~~al~  285 (756)
T 2qvw_A          209 AADLPLVAAVRLDDLKDH--QIPAPGSWDDL-APKLRFLPPELCLLLPDEFDLIRVQALQFLPEIAKHICDIQNTICALD  285 (756)
T ss_dssp             CTTSEEEEEEETTTTTTC--CCCSTTC-CCS-CSSCEEECTTTCEECCTTSCTTHHHHHTTHHHHHHHHHHHHHHHHHHG
T ss_pred             cCCCCeEEEEeccccccc--ccccccccccC-CccceeeCHHHheeecCchhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            00    000000000000  00000000111 12248999999999999999887  8999999999886533 344565


Q ss_pred             HHhCCCcCCHHHHHHHhhCCCcccccCCCCc--ccccccccCCCCCCCCCccchhcccccccccchhHHHHhhhcccccc
Q psy14776        739 DRIQYKFQNRYLLQLALTHPSYRENFGTNPD--HARNSLSNCGVRQPEYGDRRIHFQNTRKRGINTLINIMSKLGRKVAT  816 (1022)
Q Consensus       739 ~~LGY~FkD~~LL~eALTHpSy~~~~G~~Pd--~a~nsltncg~r~pe~Gd~~ih~~~~rKrGi~tlInimsrmgkn~es  816 (1022)
                      +.+.....-+..+.+|+|+++...+ |....  .-+.|||.              .                    .+  
T Consensus       286 ~~~p~~~~i~~~~leAlT~~~~~~~-g~~~~~~~~~~AlTh--------------~--------------------s~--  328 (756)
T 2qvw_A          286 KSFPDCGRIGGERYFAITAGLRLDQ-GRGRGLAGWRTPFGP--------------F--------------------GV--  328 (756)
T ss_dssp             GGSCCCSCCHHHHHHHHHHHHBCSC-CBTTBSBTTEEECBG--------------G--------------------GB--
T ss_pred             hcCCcccccCHHHHHHHhhhhhhhh-ccccchhhhhhhccc--------------c--------------------cc--
Confidence            5444444445677899999886542 10000  00111111              0                    00  


Q ss_pred             cCcCccchHHHHhhhhHhhHHHHHhhhhhCCCCCccHHHHHHHHHhcHHHHHHHHHHcCCcchhcccCCCccccccccch
Q psy14776        817 ESNITHNERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKH  896 (1022)
Q Consensus       817 ~s~i~nYERLEFLGDAVLKfiVS~~LF~kyP~lsEG~LT~lRsaLVSN~~LA~iAkkLGL~eyIr~~~g~~l~~~~~~~K  896 (1022)
                       ....|||||||||||||+++++.+||.+||+++||.|+.+|+++|+|.+|+.+|+++||++||+.++++.     ..++
T Consensus       329 -~~~~nnERLEfLGDavL~~~vs~~L~~~~P~~~eG~Ls~lRs~lVsn~~La~~A~~lgL~~~l~~~~~e~-----~~~~  402 (756)
T 2qvw_A          329 -SHTDVFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTLGLPQLAEFSNNLV-----AKSK  402 (756)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHSHHHHHHHHHHTTCTTTCBCCSCC-------CCC
T ss_pred             -cCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCchHHHHHHHHcChHHHhccCCCCC-----Cccc
Confidence             1125899999999999999999999999999999999999999999999999999999999999887643     4578


Q ss_pred             hhHHHHHHHHHHHhhc-CCHHHHHHHHHHhhh
Q psy14776        897 AMANCFEALMGALFLD-GGIDVADQVFSSVLY  927 (1022)
Q Consensus       897 vLADVfEALIGAIYLD-sGle~A~kfL~~Ll~  927 (1022)
                      ++||+|||+|||||+| +|++.|.+|+..++.
T Consensus       403 ilaD~~EAliGAiylD~~G~~~a~~~v~~~~~  434 (756)
T 2qvw_A          403 TWADMYEEIVGSIFTGPNGIYGCEEFLAKTLM  434 (756)
T ss_dssp             CHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHB
T ss_pred             HHHhHHHHHhCcccccccChHHHHHHHHHHHH
Confidence            9999999999999999 999999999987763
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B* Back     alignment and structure
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Back     alignment and structure
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Back     alignment and structure
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Back     alignment and structure
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Back     alignment and structure
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Back     alignment and structure
>3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora} Back     alignment and structure
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Back     alignment and structure
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Back     alignment and structure
>1u61_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 2.15A {Bacillus cereus} SCOP: a.149.1.1 Back     alignment and structure
>2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein STR initiative; 2.60A {Fusobacterium nucleatum subsp} Back     alignment and structure
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Back     alignment and structure
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B* Back     alignment and structure
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Back     alignment and structure
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Back     alignment and structure
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Back     alignment and structure
>3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora} Back     alignment and structure
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Back     alignment and structure
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Back     alignment and structure
>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast collaboratory for structural genomics, secsg; 2.00A {Pyrococcus furiosus} SCOP: a.149.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1022
d1u61a_127 a.149.1.1 (A:) Hypothetical protein BC0111 {Bacill 1e-20
d1u61a_127 a.149.1.1 (A:) Hypothetical protein BC0111 {Bacill 0.002
d1o0wa1169 a.149.1.1 (A:-1-167) RNase III endonuclease cataly 2e-19
d1o0wa1169 a.149.1.1 (A:-1-167) RNase III endonuclease cataly 7e-04
d2nuga1148 a.149.1.1 (A:3-150) RNase III endonuclease catalyt 6e-10
d2nuga1148 a.149.1.1 (A:3-150) RNase III endonuclease catalyt 2e-05
>d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]} Length = 127 Back     information, alignment and structure

class: All alpha proteins
fold: RNase III domain-like
superfamily: RNase III domain-like
family: RNase III catalytic domain-like
domain: Hypothetical protein BC0111
species: Bacillus cereus [TaxId: 1396]

 Score = 86.6 bits (214), Expect = 1e-20
 Identities = 20/116 (17%), Positives = 36/116 (31%), Gaps = 13/116 (11%)

Query: 823 NERLEFLGDAVVEFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY 882
           +  L ++GDAV E     HL           L     + V  +  A +   +    F+  
Sbjct: 8   SLALAYMGDAVYEQYIRYHLLQKGKV-RPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTE 66

Query: 883 AHGSDLCHEVELK------------HAMANCFEALMGALFLDGGIDVADQVFSSVL 926
              + L                   +  +  FEAL+G   L    +  D++    +
Sbjct: 67  EEEAVLRRGRNANSGTVPKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYKAI 122
>d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]} Length = 127 Back     information, alignment and structure
>d1o0wa1 a.149.1.1 (A:-1-167) RNase III endonuclease catalytic domain {Thermotoga maritima [TaxId: 2336]} Length = 169 Back     information, alignment and structure
>d1o0wa1 a.149.1.1 (A:-1-167) RNase III endonuclease catalytic domain {Thermotoga maritima [TaxId: 2336]} Length = 169 Back     information, alignment and structure
>d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]} Length = 148 Back     information, alignment and structure
>d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]} Length = 148 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1022
d1o0wa1169 RNase III endonuclease catalytic domain {Thermotog 99.97
d2nuga1148 RNase III endonuclease catalytic domain {Aquifex a 99.96
d1u61a_127 Hypothetical protein BC0111 {Bacillus cereus [TaxI 99.77
d2nuga1148 RNase III endonuclease catalytic domain {Aquifex a 99.44
d1o0wa1169 RNase III endonuclease catalytic domain {Thermotog 99.42
d1ztda1124 Hypothetical protein PF0609 {Pyrococcus furiosus [ 83.5
>d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1ztda1 a.149.1.2 (A:2-125) Hypothetical protein PF0609 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure