Diaphorina citri psyllid: psy1512

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------68
KLFSSSQTSVAGYVNRGVNISSTPSEFDLPKAGGICRSRRDSHVRQAKLAPLTSNLTQDKCFHGNTGADCAVHRVAERYPRSSGPNLTFVFDPAGRFSYYWSMIVSLAFLYNFWVIIYRFAFQEINRESLVIWFCLDYMADLMYVIDILIHFRTGYLEDGVLQTDSTKLRDHYMNSTTFYIDCLCLLPLDFLYLSIGFNSILRLFRLVKIYRFWAFMDRTERHTNYPNLFRSSSLIHYLLVIFHWNGCLYHIIYKNDGFGSRNWVYGDSDTTDVVKQYLQSYYWCTLALTTIGDLPRPRSKGEYFFVIVQLLFGLLLFATVLGHVANIVTSVSAARKEFQAKLDGVKTYMRMRRVPNALQVKVIKWFDYLWLTQKCSDEEKAVSCLPGPGSSSTKLVHGGQYELEEIAIVSNQATPNQVKYGSGPLYMSANGPKVVPDKLKAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKRTPLEKGEVGKEMYIVNRGRLQVVADNGKTVLATLRAGSYFGEISILNMGTAGTNLIQECEDHISIRFRFCKAKSTA
cccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccHHHHcccccccccccccEEEcccccHHHHHHHHHHHHHHHHHHHEEEEcccccccccccEEEEEHHHHHHHHHHHHHHHcccEEEEEccCEECcHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHccccccccccccccccccHHHHHHHHHccccccHHcccccccccccccccccccHHHHHHHHHHHHHHcccEEEccccccHHHHHHHHHccccccccccEEEEcccCEEEEEEEEEEEEEEEEEccHHHHHHHHcHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHcHHHHHHHHHHHHHHHHHcccccccccccccccHHHcccccccccccccEEEEEEccccccccHHHcccccccccccccccccccccccEEEccccc
************************************************************************************PNLTFVFDPAGRFSYYWSMIVSLAFLYNFWVIIYRFAFQEINRESLVIWFCLDYMADLMYVIDILIHFRTGYLEDGVLQTDSTKLRDHYMNSTTFYIDCLCLLPLDFLYLSIGFNSILRLFRLVKIYRFWAFMDRTERHTNYPNLFRSSSLIHYLLVIFHWNGCLYHIIYKNDGFGSRNWVYGDSDTTDVVKQYLQSYYWCTLALTTIGDLPRPRSKGEYFFVIVQLLFGLLLFATVLGHVANIVTSVSAARKEFQAKLDGVKTYMRMRRVPNALQVKVIKWFDYLWLTQKCSDEEKAVSCLPGPGSSSTKLVHGGQYELEEIAIVSNQATPNQVKYGSGPLYMSANGPKVVPDKLKAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKY**********************VRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKRTPLEKGEVGKEMYIV*RGRLQVVADNGKTVLATLRAGSYFGEISILNMGTAGTNLIQECEDHISIRFRFCKAKS**
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHHHHxxxxxxxxHHHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
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KLFSSSQTSVAGYVNRGVNISSTPSEFDLPKAGGICRSRRDSHVRQAKLAPLTSNLTQDKCFHGNTGADCAVHRVAERYPRSSGPNLTFVFDPAGRFSYYWSMIVSLAFLYNFWVIIYRFAFQEINRESLVIWFCLDYMADLMYVIDILIHFRTGYLEDGVLQTDSTKLRDHYMNSTTFYIDCLCLLPLDFLYLSIGFNSILRLFRLVKIYRFWAFMDRTERHTNYPNLFRSSSLIHYLLVIFHWNGCLYHIIYKNDGFGSRNWVYGDSDTTDVVKQYLQSYYWCTLALTTIGDLPRPRSKGEYFFVIVQLLFGLLLFATVLGHVANIVTSVSAARKEFQAKLDGVKTYMRMRRVPNALQVKVIKWFDYLWLTQKCSDEEKAVSCLPGPGSSSTKLVHGGQYELEEIAIVSNQATPNQVKYGSGPLYMSANGPKVVPDKLKAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKRTPLEKGEVGKEMYIVNRGRLQVVADNGKTVLATLRAGSYFGEISILNMGTAGTNLIQECEDHISIRFRFCKAKSTA

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Cyclic nucleotide-gated olfactory channel Odorant signal transduction is probably mediated by a G-protein coupled cascade using cAMP as second messenger. The olfactory channel can be shown to be activated by cyclic nucleotides which leads to a depolarization of olfactory sensory neurons.confidentQ62398
Cyclic nucleotide-gated channel cone photoreceptor subunit alpha Visual signal transduction is mediated by a G-protein coupled cascade using cGMP as second messenger. This protein can be activated by cyclic GMP which leads to an opening of the cation channel and thereby causing a depolarization of cone photoreceptors.confidentQ90805
Cyclic nucleotide-gated cation channel alpha-3 Visual signal transduction is mediated by a G-protein coupled cascade using cGMP as second messenger. This protein can be activated by cyclic GMP which leads to an opening of the cation channel and thereby causing a depolarization of cone photoreceptors. Induced a flickering channel gating, weakened the outward rectification in the presence of extracellular calcium, increased sensitivity for L-cis diltiazem and enhanced the cAMP efficacy of the channel when coexpressed with CNGB3 (By similarity). Essential for the generation of light-evoked electrical responses in the red-, green- and blue sensitive cones.confidentQ16281

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0043204 [CC]perikaryonprobableGO:0044464, GO:0044297, GO:0005623, GO:0005575, GO:0097458, GO:0043025
GO:0001750 [CC]photoreceptor outer segmentprobableGO:0072372, GO:0043231, GO:0044464, GO:0005623, GO:0031513, GO:0005575, GO:0043229, GO:0005929, GO:0044424, GO:0042995, GO:0043227, GO:0043226, GO:0005622
GO:0017071 [CC]intracellular cyclic nucleotide activated cation channel complexprobableGO:0043234, GO:0032991, GO:0016021, GO:0016020, GO:0005575, GO:0034702, GO:0034703, GO:0044425, GO:0031224
GO:0008150 [BP]biological_processprobable
GO:0005223 [MF]intracellular cGMP activated cation channel activityprobableGO:0022891, GO:0008324, GO:0005261, GO:0043855, GO:0005221, GO:0005215, GO:0005216, GO:0005217, GO:0015276, GO:0015075, GO:0022857, GO:0015267, GO:0003674, GO:0022836, GO:0022892, GO:0022834, GO:0022803, GO:0022839, GO:0022838
GO:0044463 [CC]cell projection partprobableGO:0005575, GO:0042995, GO:0044464, GO:0005623
GO:0005886 [CC]plasma membraneprobableGO:0005575, GO:0044464, GO:0016020, GO:0071944, GO:0005623
GO:0030553 [MF]cGMP bindingprobableGO:0043168, GO:0030551, GO:0019001, GO:0097159, GO:0000166, GO:0036094, GO:0032561, GO:0003674, GO:0032553, GO:0032555, GO:0017076, GO:0043167, GO:1901363, GO:1901265, GO:0005488

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 3BPZ, chain A
Confidence level:very confident
Coverage over the Query: 333-386,437-525,536-601
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Template: 3SHR, chain A
Confidence level:very confident
Coverage over the Query: 434-666
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Template: 3BEH, chain A
Confidence level:confident
Coverage over the Query: 95-156,169-257,271-335,364-368,449-451
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View the model in PyMOL
Template: 2R9R, chain B
Confidence level:confident
Coverage over the Query: 19-156,169-257,271-336
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View the model in PyMOL
Template: 3U11, chain A
Confidence level:probable
Coverage over the Query: 333-389,440-536
View the alignment between query and template
View the model in PyMOL