Psyllid ID: psy1512

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------68
KLFSSSQTSVAGYVNRGVNISSTPSEFDLPKAGGICRSRRDSHVRQAKLAPLTSNLTQDKCFHGNTGADCAVHRVAERYPRSSGPNLTFVFDPAGRFSYYWSMIVSLAFLYNFWVIIYRFAFQEINRESLVIWFCLDYMADLMYVIDILIHFRTGYLEDGVLQTDSTKLRDHYMNSTTFYIDCLCLLPLDFLYLSIGFNSILRLFRLVKIYRFWAFMDRTERHTNYPNLFRSSSLIHYLLVIFHWNGCLYHIIYKNDGFGSRNWVYGDSDTTDVVKQYLQSYYWCTLALTTIGDLPRPRSKGEYFFVIVQLLFGLLLFATVLGHVANIVTSVSAARKEFQAKLDGVKTYMRMRRVPNALQVKVIKWFDYLWLTQKCSDEEKAVSCLPGPGSSSTKLVHGGQYELEEIAIVSNQATPNQVKYGSGPLYMSANGPKVVPDKLKAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKRTPLEKGEVGKEMYIVNRGRLQVVADNGKTVLATLRAGSYFGEISILNMGTAGTNLIQECEDHISIRFRFCKAKSTA
cccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccHHHHHHccccccccccccEEEcccccHHHHHHHHHHHHHHHHHHHEEEEcccccccccccEEEEEHHHHHHHHHHHHHHHcccEEEEEccEEEEcHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHccccccccccccccccccHHHHHHHHHccccccHHcccccccccccccccccccHHHHHHHHHHHHHHcccEEEccccccHHHHHHHHHccccccccccEEEEcccEEEEEEEEEEEEEEEEEEccHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHcHHHHHHHHHHHHHHHHHccccccccccccccHHHHcccccccccccccEEEEEEccccccccHHHcccccccccccccccccccccccEEEccccc
ccccccccHHHcHccccccccccccccccccccccccccHHHccccccccccccccHHHccccccccccccccccccccccccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHEEEEEHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccHcHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcHccccccccccccHHHHHHHcHHEEEHHHccEEEEEEccccHHEEHEEEccccccccccEEEEccccccEEEEEEEcccEEEEccccHHHHHHcccccccHHHHHHHHHHcccccccHHHEEcccccccccccccEEEcccccHHHccHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccHHHHHccccccHHHcccccEcccccccHHHHHHHHHHHHHEEEEccccccccHHHHHHccEEEEEEEEEccccc
klfsssqtsvagyvnrgvnisstpsefdlpkaggicrsrrdshvrqaklapltsnltqdkcfhgntgadcavhrvaeryprssgpnltfvfdpagrfsYYWSMIVSLAFLYNFWVIIYRFAFQEINRESLVIWFCLDYMADLMYVIDILIHFRtgyledgvlqtdstklrdhymnsTTFYIDCLCLLPLDFLYLSIGFNSILRLFRLVKIYRFWAfmdrterhtnypnlfrssSLIHYLLVIFHWNGCLYHIIYkndgfgsrnwvygdsdttDVVKQYLQSYYWCTLALTtigdlprprskgeYFFVIVQLLFGLLLFATVLGHVANIVTSVSAARKEFQAKLDGVKTYMRMRRVPNALQVKVIKWFDYLWLTQkcsdeekavsclpgpgssstklvhggqyelEEIAIVsnqatpnqvkygsgplymsangpkvvpdklKAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRlrpvlfspgdyicrkgnrrtasvrsvGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKykrtplekgispspfpgnrrtasvrsvgYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQkykrtplekgevgkemyIVNRGRLQVVADNGKTVLATLRAGSYFGEISILNMGTAGTNLIQECEDHISIRFRFCKAKSTA
klfsssqtsvagyvnrgvnisstpsefdlpkagGICRSRRDSHVRQAKLapltsnltqdkcFHGNTGADCAVHRVAEryprssgpnltFVFDPAGRFSYYWSMIVSLAFLYNFWVIIYRFAFQEINRESLVIWFCLDYMADLMYVIDILIHFRTGYLEDGVLQTDSTKLRDHYMNSTTFYIDCLCLLPLDFLYLSIGFNSILRLFRLVKIYRFWAFMDRTERHTNYPNLFRSSSLIHYLLVIFHWNGCLYHIIYKNDGFGSRNWVYGDSDTTDVVKQYLQSYYWCTLALTTIGDLPRPRSKGEYFFVIVQLLFGLLLFATVLGHVANIVTSVSAARKEFQAkldgvktymrmrrVPNALQVKVIKWFDYLWLTQKCSDEEKAVSCLPGPGSSSTKLVHGGQYELEEIAIVSNQATPNQVKYGSGPLYMSANGPKVVPDKLKAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLfspgdyicrkgnrrtasvrsvgysdlfvlsKTDMWDVLKEYpaarvrlesiavkrlqkykrtplekgispspfpgnrrtASVRSVGYSDLFVLSKTDMWDVLKEYpaarvrlesiavkrlqkykrtplekgevgkemyiVNRGRLQVVADNGKTVLATLRAGSYFGEISILNMGTAGTNLIQECEDHISIRFRFCKAKSTA
KLFSSSQTSVAGYVNRGVNISSTPSEFDLPKAGGICRSRRDSHVRQAKLAPLTSNLTQDKCFHGNTGADCAVHRVAERYPRSSGPNLTFVFDPAGRFSYYWSMIVSLAFLYNFWVIIYRFAFQEINRESLVIWFCLDYMADLMYVIDILIHFRTGYLEDGVLQTDSTKLRDHYMNSTTFYIdclcllpldflylSIGFNSILRLFRLVKIYRFWAFMDRTERHTNYPNLFRSSSLIHYLLVIFHWNGCLYHIIYKNDGFGSRNWVYGDSDTTDVVKQYLQSYYWCTLALTTIGDLPRPRSKGEYffvivqllfglllfatvlGHVANIVTSVSAARKEFQAKLDGVKTYMRMRRVPNALQVKVIKWFDYLWLTQKCSDEEKAVSCLPGPGSSSTKLVHGGQYELEEIAIVSNQATPNQVKYGSGPLYMSANGPKVVPDKLKAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKRTPLEKGEVGKEMYIVNRGRLQVVADNGKTVLATLRAGSYFGEISILNMGTAGTNLIQECEDHISIRFRFCKAKSTA
***************************************************LTSNLTQDKCFHGNTGADCAVHRVAERYPRSSGPNLTFVFDPAGRFSYYWSMIVSLAFLYNFWVIIYRFAFQEINRESLVIWFCLDYMADLMYVIDILIHFRTGYLEDGVLQTDSTKLRDHYMNSTTFYIDCLCLLPLDFLYLSIGFNSILRLFRLVKIYRFWAFMDRTERHTNYPNLFRSSSLIHYLLVIFHWNGCLYHIIYKNDGFGSRNWVYGDSDTTDVVKQYLQSYYWCTLALTTIGDLPRPRSKGEYFFVIVQLLFGLLLFATVLGHVANIVTSVSAARKEFQAKLDGVKTYMRMRRVPNALQVKVIKWFDYLWLTQKCSDE***V************LVHGGQYELEEIAIVSNQATPNQVKYGSGPLYMSANGPKVVPDKLKAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKY**********************VRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKRTPLEKGEVGKEMYIVNRGRLQVVADNGKTVLATLRAGSYFGEISILNMGTAGTNLIQECEDHISIRFRFCK*****
**************************************************************************************LTFVFDPAGRFSYYWSMIVSLAFLYNFWVIIYRFAFQEINRESLVIWFCLDYMADLMYVIDILIHFRTGYLEDGVLQTDSTKLRDHYMNSTTFYIDCLCLLPLDFLYLSIGFNSILRLFRLVKIYRFWAFMDRTERHTNYPNLFRSSSLIHYLLVIFHWNGCLYHIIYKNDGFGSRNWVYGDSDTTDVVKQYLQSYYWCTLALTTIGDLPRPRSKGEYFFVIVQLLFGLLLFATVLGHVANIVTSVSAARKEFQAKLDGVKTYMRMRRVPNALQVKVIKWFDYLWLTQKCSDEEKAVSCLPGPGSSSTKLVHGGQYELEEIAIVSNQATPNQVKYGSGPLYMSANGPKVVPDKLKAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKY**********************VRSVGYSDLFVLSKTDMWDVLKEYPAA*****SI****************************************LATLRAGSYF*******************EDHISIRFRFCKAKS**
*********VAGYVNRGVNISSTPSEFDLPKAGGICRSRRDSHVRQAKLAPLTSNLTQDKCFHGNTGADCAVHRVAERYPRSSGPNLTFVFDPAGRFSYYWSMIVSLAFLYNFWVIIYRFAFQEINRESLVIWFCLDYMADLMYVIDILIHFRTGYLEDGVLQTDSTKLRDHYMNSTTFYIDCLCLLPLDFLYLSIGFNSILRLFRLVKIYRFWAFMDRTERHTNYPNLFRSSSLIHYLLVIFHWNGCLYHIIYKNDGFGSRNWVYGDSDTTDVVKQYLQSYYWCTLALTTIGDLPRPRSKGEYFFVIVQLLFGLLLFATVLGHVANIVTSVSAARKEFQAKLDGVKTYMRMRRVPNALQVKVIKWFDYLWLTQKCSDEEKAVSCLPGPGSSSTKLVHGGQYELEEIAIVSNQATPNQVKYGSGPLYMSANGPKVVPDKLKAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKRTPLEKGEVGKEMYIVNRGRLQVVADNGKTVLATLRAGSYFGEISILNMGTAGTNLIQECEDHISIRFRFCKAKSTA
************************************************************************************PNLTFVFDPAGRFSYYWSMIVSLAFLYNFWVIIYRFAFQEINRESLVIWFCLDYMADLMYVIDILIHFRTGYLEDGVLQTDSTKLRDHYMNSTTFYIDCLCLLPLDFLYLSIGFNSILRLFRLVKIYRFWAFMDRTERHTNYPNLFRSSSLIHYLLVIFHWNGCLYHIIYKNDGFGSRNWVYGDSDTTDVVKQYLQSYYWCTLALTTIGDLPRPRSKGEYFFVIVQLLFGLLLFATVLGHVANIVTSVSAARKEFQAKLDGVKTYMRMRRVPNALQVKVIKWFDYLWLTQKCSDEEKAVSCLPGPGSSSTKLVHGGQYELEEIAIVSNQATPNQVKYGSGPLYMSANGPKVVPDKLKAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKRTPLEKGEVGKEMYIV*RGRLQVVADNGKTVLATLRAGSYFGEISILNMGTAGTNLIQECEDHISIRFRFCKAK***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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KLFSSSQTSVAGYVNRGVNISSTPSEFDLPKAGGICRSRRDSHVRQAKLAPLTSNLTQDKCFHGNTGADCAVHRVAERYPRSSGPNLTFVFDPAGRFSYYWSMIVSLAFLYNFWVIIYRFAFQEINRESLVIWFCLDYMADLMYVIDILIHFRTGYLEDGVLQTDSTKLRDHYMNSTTFYIDCLCLLPLDFLYLSIGFNSILRLFRLVKIYRFWAFMDRTERHTNYPNLFRSSSLIHYLLVIFHWNGCLYHIIYKNDGFGSRNWVYGDSDTTDVVKQYLQSYYWCTLALTTIGDLPRPRSKGEYFFVIVQLLFGLLLFATVLGHVANIVTSVSAARKEFQAKLDGVKTYMRMRRVPNALQVKVIKWFDYLWLTQKCSDEEKAVSCLPGPGSSSTKLVHGGQYELEEIAIVSNQATPNQVKYGSGPLYMSANGPKVVPDKLKAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKRTPLEKGEVGKEMYIVNRGRLQVVADNGKTVLATLRAGSYFGEISILNMGTAGTNLIQECEDHISIRFRFCKAKSTA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query679 2.2.26 [Sep-21-2011]
Q90805735 Cyclic nucleotide-gated c yes N/A 0.699 0.646 0.388 1e-109
Q16281694 Cyclic nucleotide-gated c yes N/A 0.642 0.628 0.397 1e-109
Q90980645 Cyclic nucleotide-gated c no N/A 0.662 0.697 0.381 1e-107
Q29441706 Cyclic nucleotide-gated c yes N/A 0.706 0.679 0.370 1e-106
Q00195664 Cyclic nucleotide-gated o yes N/A 0.693 0.709 0.380 1e-106
Q62398664 Cyclic nucleotide-gated o yes N/A 0.693 0.709 0.380 1e-106
Q28718664 Cyclic nucleotide-gated o no N/A 0.693 0.709 0.380 1e-106
Q9JJZ8631 Cyclic nucleotide-gated c no N/A 0.681 0.733 0.384 1e-105
Q16280664 Cyclic nucleotide-gated o no N/A 0.693 0.709 0.372 1e-104
Q00194690 cGMP-gated cation channel no N/A 0.640 0.630 0.384 1e-103
>sp|Q90805|CNG1_CHICK Cyclic nucleotide-gated channel cone photoreceptor subunit alpha OS=Gallus gallus PE=2 SV=1 Back     alignment and function desciption
 Score =  397 bits (1019), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 220/567 (38%), Positives = 309/567 (54%), Gaps = 92/567 (16%)

Query: 89  FVFDPAGRFSYYWSMIVSLAFLYNFWVIIYRFAFQEINRESLVIWFCLDYMADLMYVIDI 148
           FV DP+    Y W  I++    YN+ ++I R  F E+  + + +W  LDY +D++YV D+
Sbjct: 201 FVIDPSSNMYYNWLTIIAAPVFYNWCMLICRACFDELQIDHIKLWLFLDYCSDIIYVFDM 260

Query: 149 LIHFRTGYLEDGVLQTDSTKLRDHYMNSTTFYIDCLCLLPLDFLYLSIGFN-SILRLFRL 207
            + FRTG+LE G+L  D  KLRDHY  +  F +D L LLP D  YL +G N   LR  RL
Sbjct: 261 FVRFRTGFLEQGLLVKDEKKLRDHYTQTVQFKLDVLSLLPTDLAYLKLGLNYPELRFNRL 320

Query: 208 VKIYRFWAFMDRTERHTNYPNLFRSSSLIHYLLVIFHWNGCLYHIIYKNDGFGSRNWVYG 267
           ++I R + F DRTE  TNYPN+FR  +L+ Y+L+I HWN C+Y  I K  GFG+ +WVY 
Sbjct: 321 LRIARLFEFFDRTETRTNYPNMFRIGNLVLYILIIIHWNACIYFAISKVIGFGTDSWVYP 380

Query: 268 DSDTTD---VVKQYLQSYYWCTLALTTIGDLPRPRSKGEYFFVIVQLLFGLLLFATVLGH 324
           +    +   + ++Y+ S YW TL LTTIG+ P P    EY FV++  L G+L+FAT++G+
Sbjct: 381 NVSIPEYGRLSRKYIYSLYWSTLTLTTIGETPPPVKDEEYLFVVIDFLVGVLIFATIVGN 440

Query: 325 VANIVTSVSAARKEFQAKLDGVKTYMRMRRVPNALQVKVIKWFDYLWLTQKCSDEEKAVS 384
           V +++++++A+R EFQAK+D +K YM  R+V   L+ +VIKWFDYLW  +K  DE++ + 
Sbjct: 441 VGSMISNMNASRAEFQAKVDSIKQYMHFRKVTKDLEARVIKWFDYLWTNKKTVDEKEVL- 499

Query: 385 CLPGPGSSSTKLVHGGQYELEEIAIVSNQATPNQVKYGSGPLYMSANGPKVVPDKLKAEI 444
                                                            K +PDKLKAEI
Sbjct: 500 -------------------------------------------------KNLPDKLKAEI 510

Query: 445 AINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGN----------RRTA 494
           AINVHLDTLK+V IFQ+ EAG L ELVL+L+P +FSPGDYIC+KG+           + A
Sbjct: 511 AINVHLDTLKKVRIFQDCEAGLLIELVLKLKPTVFSPGDYICKKGDIGREMYIIKEGKLA 570

Query: 495 SVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKRTPLEKGISPSPFPGN 554
            V   G +   VLS    +               I++  ++  K              GN
Sbjct: 571 VVADDGITQFVVLSDGSYFG-------------EISILNIKGSK-------------SGN 604

Query: 555 RRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKRTPLEKGEVGKE 614
           RRTA++RS+GYSDLF LSK D+ + L EYP A+  LE    + L K      E  + G +
Sbjct: 605 RRTANIRSIGYSDLFCLSKDDLMEALTEYPEAKKALEEKGRQILMKDNLIDEEAAKAGAD 664

Query: 615 MYIVNR--GRLQVVADNGKTVLATLRA 639
              +     RL+   D  +T  A L A
Sbjct: 665 PKDLEEKIDRLETALDTLQTRFARLLA 691
Visual signal transduction is mediated by a G-protein coupled cascade using cGMP as second messenger. This protein can be activated by cyclic GMP which leads to an opening of the cation channel and thereby causing a depolarization of cone photoreceptors.
Gallus gallus (taxid: 9031)
>sp|Q16281|CNGA3_HUMAN Cyclic nucleotide-gated cation channel alpha-3 OS=Homo sapiens GN=CNGA3 PE=1 SV=2 Back     alignment and function description
>sp|Q90980|CNG3_CHICK Cyclic nucleotide-gated channel rod photoreceptor subunit alpha OS=Gallus gallus PE=2 SV=1 Back     alignment and function description
>sp|Q29441|CNGA3_BOVIN Cyclic nucleotide-gated cation channel alpha-3 OS=Bos taurus GN=CNGA3 PE=2 SV=1 Back     alignment and function description
>sp|Q00195|CNGA2_RAT Cyclic nucleotide-gated olfactory channel OS=Rattus norvegicus GN=Cnga2 PE=2 SV=1 Back     alignment and function description
>sp|Q62398|CNGA2_MOUSE Cyclic nucleotide-gated olfactory channel OS=Mus musculus GN=Cnga2 PE=2 SV=2 Back     alignment and function description
>sp|Q28718|CNGA2_RABIT Cyclic nucleotide-gated olfactory channel OS=Oryctolagus cuniculus GN=CNGA2 PE=2 SV=1 Back     alignment and function description
>sp|Q9JJZ8|CNGA3_MOUSE Cyclic nucleotide-gated cation channel alpha-3 OS=Mus musculus GN=Cnga3 PE=1 SV=2 Back     alignment and function description
>sp|Q16280|CNGA2_HUMAN Cyclic nucleotide-gated olfactory channel OS=Homo sapiens GN=CNGA2 PE=2 SV=2 Back     alignment and function description
>sp|Q00194|CNGA1_BOVIN cGMP-gated cation channel alpha-1 OS=Bos taurus GN=CNGA1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query679
328790705 1279 PREDICTED: hypothetical protein LOC40886 0.790 0.419 0.625 0.0
347965253 859 AGAP007008-PA [Anopheles gambiae str. PE 0.787 0.622 0.631 0.0
442624480 1247 CG42260, isoform D [Drosophila melanogas 0.673 0.366 0.711 0.0
221330550 1249 CG42260, isoform A [Drosophila melanogas 0.706 0.384 0.695 0.0
195346845 1215 GM15610 [Drosophila sechellia] gi|194135 0.706 0.395 0.695 0.0
195488006 1226 GE11836 [Drosophila yakuba] gi|194178232 0.698 0.386 0.689 0.0
307196336 1293 Cyclic nucleotide-gated cation channel a 0.792 0.416 0.640 0.0
194884536 1227 GG20095 [Drosophila erecta] gi|190659473 0.706 0.391 0.695 0.0
195430540 1214 GK21842 [Drosophila willistoni] gi|19415 0.718 0.401 0.675 0.0
340727320 1284 PREDICTED: hypothetical protein LOC10064 0.793 0.419 0.636 0.0
>gi|328790705|ref|XP_392395.4| PREDICTED: hypothetical protein LOC408865 [Apis mellifera] Back     alignment and taxonomy information
 Score =  771 bits (1991), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/662 (62%), Positives = 456/662 (68%), Gaps = 125/662 (18%)

Query: 1   KLFSSSQTSVAG-YVNRGVNISSTPSEFDLPKAGGICRSRRDSHVRQAKLAPLTSNLTQD 59
           + FSSS+ S+ G YVNRG       SEFDL +     + +R   +R     P T  L++D
Sbjct: 214 RYFSSSRDSLHGAYVNRGA------SEFDLSR-----KPKRRDQLRGRFKLPYTVTLSRD 262

Query: 60  KCFHGNTGADC--------------------AVHRVAERYP--------RSSGPNLTFVF 91
           +  H +T A                         R +  YP        R+  PN +F+F
Sbjct: 263 QS-HLHTPASVNHLSNSSCNGTETRYTVQQQQQQRGSRGYPGQAGTKGFRTGAPNWSFIF 321

Query: 92  DPAGRFSYYWSMIVSLAFLYNFWVIIYRFAFQEINRESLVIWFCLDYMADLMYVIDILIH 151
           DPAGR  YYWSM+VSLAFLYNFWVIIYRFAFQEIN E+  +WFCLDY +D +YV+DI+ H
Sbjct: 322 DPAGRLCYYWSMVVSLAFLYNFWVIIYRFAFQEINGETRWVWFCLDYFSDFLYVLDIVFH 381

Query: 152 FRTGYLEDGVLQTDSTKLRDHYMNSTTFYIDCLCLLPLDFLYLSIGFNSILRLFRLVKIY 211
            RTGYLEDGVLQTD+TKLR+HY NSTTFY+D LCLLPLDFLYLSIGFNSILR FRLVKIY
Sbjct: 382 IRTGYLEDGVLQTDATKLRNHYTNSTTFYMDILCLLPLDFLYLSIGFNSILRSFRLVKIY 441

Query: 212 RFWAFMDRTERHTNYPNLFRSSSLIHYLLVIFHWNGCLYHIIYKNDGFGSRNWVYGDSDT 271
           RFWAFMDRTERHTNYPNLFRS+SLIHYLLVIFHWNGCLYHIIYKN+GFGS+NWV+ DS+T
Sbjct: 442 RFWAFMDRTERHTNYPNLFRSTSLIHYLLVIFHWNGCLYHIIYKNNGFGSKNWVFSDSET 501

Query: 272 TDVVKQYLQSYYWCTLALTTIGDLPRPRSKGEYFFVIVQLLFGLLLFATVLGHVANIVTS 331
            DVVKQYLQSYYWCTLALTTIGDLPRPRSKGEY FVI QLLFGLLLFATVLGHVANIVTS
Sbjct: 502 ADVVKQYLQSYYWCTLALTTIGDLPRPRSKGEYLFVIAQLLFGLLLFATVLGHVANIVTS 561

Query: 332 VSAARKEFQAKLDGVKTYMRMRRVPNALQVKVIKWFDYLWLTQKCSDEEKAVSCLPGPGS 391
           VSAARKEFQAKLDGVKTYMRMRRVP  LQVKVIKWFDYLWLTQKCSDEEKAVSCL     
Sbjct: 562 VSAARKEFQAKLDGVKTYMRMRRVPKHLQVKVIKWFDYLWLTQKCSDEEKAVSCL----- 616

Query: 392 SSTKLVHGGQYELEEIAIVSNQATPNQVKYGSGPLYMSANGPKVVPDKLKAEIAINVHLD 451
                                                        PDKLKAEIAINVHLD
Sbjct: 617 ---------------------------------------------PDKLKAEIAINVHLD 631

Query: 452 TLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTD 511
           TL+RVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKG                      
Sbjct: 632 TLRRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKG---------------------- 669

Query: 512 MWDVLKE-YPAARVRLESIA-----VKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGY 565
             +V KE Y   R RL+ +A     V    K      E  I      GNRRTASVRSVGY
Sbjct: 670 --EVGKEMYIVNRGRLQVVADNGKTVLATLKAGSYFGEISILNMRTAGNRRTASVRSVGY 727

Query: 566 SDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKRTPLEKGEVGK----EMYIVNRG 621
           SDLFVLSK DMWDVLKEYPAAR+RLE+IAVKRL+KYKR PLEK  +G+       + +RG
Sbjct: 728 SDLFVLSKKDMWDVLKEYPAARIRLEAIAVKRLEKYKRAPLEKAAMGRCQSTPGLVESRG 787

Query: 622 RL 623
           R+
Sbjct: 788 RI 789

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|347965253|ref|XP_001237138.3| AGAP007008-PA [Anopheles gambiae str. PEST] gi|333466443|gb|EAU77684.3| AGAP007008-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|442624480|ref|NP_001261141.1| CG42260, isoform D [Drosophila melanogaster] gi|440214587|gb|AGB93672.1| CG42260, isoform D [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|221330550|ref|NP_611715.3| CG42260, isoform A [Drosophila melanogaster] gi|220902344|gb|AAF46899.3| CG42260, isoform A [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|195346845|ref|XP_002039965.1| GM15610 [Drosophila sechellia] gi|194135314|gb|EDW56830.1| GM15610 [Drosophila sechellia] Back     alignment and taxonomy information
>gi|195488006|ref|XP_002092131.1| GE11836 [Drosophila yakuba] gi|194178232|gb|EDW91843.1| GE11836 [Drosophila yakuba] Back     alignment and taxonomy information
>gi|307196336|gb|EFN77946.1| Cyclic nucleotide-gated cation channel alpha-3 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|194884536|ref|XP_001976286.1| GG20095 [Drosophila erecta] gi|190659473|gb|EDV56686.1| GG20095 [Drosophila erecta] Back     alignment and taxonomy information
>gi|195430540|ref|XP_002063312.1| GK21842 [Drosophila willistoni] gi|194159397|gb|EDW74298.1| GK21842 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|340727320|ref|XP_003401994.1| PREDICTED: hypothetical protein LOC100647879 [Bombus terrestris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query679
FB|FBgn02591451249 CG42260 [Drosophila melanogast 0.702 0.381 0.635 4.4e-155
UNIPROTKB|F1NEW7731 CNGA3 "Uncharacterized protein 0.440 0.409 0.392 1.4e-93
UNIPROTKB|Q90805735 Q90805 "Cyclic nucleotide-gate 0.440 0.406 0.392 1.4e-93
ZFIN|ZDB-GENE-061005-1673 cnga5 "cyclic nucleotide gated 0.440 0.444 0.379 2.6e-93
UNIPROTKB|Q16281694 CNGA3 "Cyclic nucleotide-gated 0.438 0.429 0.384 4.8e-93
UNIPROTKB|E9PF93698 CNGA3 "Cyclic nucleotide-gated 0.438 0.426 0.384 4.8e-93
RGD|2367664 Cnga2 "cyclic nucleotide gated 0.440 0.450 0.392 6.2e-93
UNIPROTKB|Q00195664 Cnga2 "Cyclic nucleotide-gated 0.440 0.450 0.392 6.2e-93
MGI|MGI:108040664 Cnga2 "cyclic nucleotide gated 0.440 0.450 0.392 1e-92
UNIPROTKB|E2QWD5664 CNGA2 "Uncharacterized protein 0.440 0.450 0.389 5.5e-92
FB|FBgn0259145 CG42260 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1512 (537.3 bits), Expect = 4.4e-155, P = 4.4e-155
 Identities = 308/485 (63%), Positives = 349/485 (71%)

Query:    63 HGNTGADCAVHRVAERYPRSS--GPNLTFVFDPAGRFSYYWSMIVSLAFLYNFWVIIYRF 120
             HG         R A +  R++     L FVFDPAGR  YYWSM+VS+AFLYNFWVIIYRF
Sbjct:   543 HGGQPHHQKPRRTASQRIRAATAARKLHFVFDPAGRLCYYWSMVVSMAFLYNFWVIIYRF 602

Query:   121 AFQEINRESLVIWFCLDYMADLMYVIDILIHFRTGYLEDGVLQTDSTKLRDHYMNSTTFY 180
             AFQEINR ++ IWFCLDY++D +Y+IDIL HFRTGYLEDGVLQTD+ KLR HYMNST FY
Sbjct:   603 AFQEINRRTIAIWFCLDYLSDFLYLIDILFHFRTGYLEDGVLQTDALKLRTHYMNSTIFY 662

Query:   181 IXXXXXXXXXXXXXSIGFNSILRLFRLVKIYRFWAFMDRTERHTNYPNLFRSSSLIHYLL 240
             I             SIGFNSILR FRLVKIYRFWAFMDRTERHTNYPNLFRS++LIHYLL
Sbjct:   663 IDCLCLLPLDFLYLSIGFNSILRSFRLVKIYRFWAFMDRTERHTNYPNLFRSTALIHYLL 722

Query:   241 VIFHWNGCLYHIIYKNDGFGSRNWVYGDSDTTDVVKQYLQSYYWCTLALTTIGDLPRPRS 300
             VIFHWNGCLYHII+KN+GFGSRNWVY DS++ DVVKQYLQSYYWCTLALTTIGDLP+PRS
Sbjct:   723 VIFHWNGCLYHIIHKNNGFGSRNWVYHDSESADVVKQYLQSYYWCTLALTTIGDLPKPRS 782

Query:   301 KGEYXXXXXXXXXXXXXXXXXXGHVANIVTSVSAARKEFQAKLDGVKTYMRMRRVPNALQ 360
             KGEY                  GHVANIVTSVSAARKEFQAKLDGVKTYMRMRRVPN LQ
Sbjct:   783 KGEYVFVILQLLFGLMLFATVLGHVANIVTSVSAARKEFQAKLDGVKTYMRMRRVPNHLQ 842

Query:   361 VKVIKWFDYLWLTQKCSDEEKAVSCLPGPGSSSTKL-VHGGQYELEEIAIVSNQATPNQV 419
             VKVIKWFDYLWLTQKCSDEE+AVSCLP    +   + VH    +  EI   +      ++
Sbjct:   843 VKVIKWFDYLWLTQKCSDEERAVSCLPDKLKAEIAINVHLDTLKRVEIFQNTEAGFLCEL 902

Query:   420 KYGSGPLYMSANGPKVVPDKLKAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLF 479
                  P+  S  G  +     K E+   +++    R+++  +     +  L         
Sbjct:   903 VLRLRPVLFSP-GDYICR---KGEVGKEMYIVNRGRLQVVADNGKTVMASLKAGSYFGEI 958

Query:   480 SPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKR 539
             S  + +   GNRRTASVRSVGYSDLFVLSK DMWDVLKEYPAARVRLESIAVKRL+KYK+
Sbjct:   959 SILN-MGTAGNRRTASVRSVGYSDLFVLSKKDMWDVLKEYPAARVRLESIAVKRLEKYKK 1017

Query:   540 TPLEK 544
              PLEK
Sbjct:  1018 APLEK 1022
GO:0005221 "intracellular cyclic nucleotide activated cation channel activity" evidence=ISS
GO:0016020 "membrane" evidence=IEA
GO:0006811 "ion transport" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
UNIPROTKB|F1NEW7 CNGA3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q90805 Q90805 "Cyclic nucleotide-gated channel cone photoreceptor subunit alpha" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-061005-1 cnga5 "cyclic nucleotide gated channel alpha 5" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q16281 CNGA3 "Cyclic nucleotide-gated cation channel alpha-3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E9PF93 CNGA3 "Cyclic nucleotide-gated cation channel alpha-3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|2367 Cnga2 "cyclic nucleotide gated channel alpha 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q00195 Cnga2 "Cyclic nucleotide-gated olfactory channel" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:108040 Cnga2 "cyclic nucleotide gated channel alpha 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2QWD5 CNGA2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q00195CNGA2_RATNo assigned EC number0.38010.69360.7093yesN/A
Q29441CNGA3_BOVINNo assigned EC number0.37050.70690.6798yesN/A
Q16281CNGA3_HUMANNo assigned EC number0.39730.64210.6282yesN/A
Q90805CNG1_CHICKNo assigned EC number0.38800.69950.6462yesN/A
Q03611CNG_CAEELNo assigned EC number0.32750.65680.6084yesN/A
Q62398CNGA2_MOUSENo assigned EC number0.38010.69360.7093yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query679
PLN03192 823 PLN03192, PLN03192, Voltage-dependent potassium ch 2e-15
pfam00520194 pfam00520, Ion_trans, Ion transport protein 7e-14
smart00100120 smart00100, cNMP, Cyclic nucleotide-monophosphate 1e-07
cd00038115 cd00038, CAP_ED, effector domain of the CAP family 2e-06
cd00038115 cd00038, CAP_ED, effector domain of the CAP family 3e-06
cd00038115 cd00038, CAP_ED, effector domain of the CAP family 5e-05
pfam0002791 pfam00027, cNMP_binding, Cyclic nucleotide-binding 7e-05
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional Back     alignment and domain information 
 Score = 79.5 bits (196), Expect = 2e-15
 Identities = 71/283 (25%), Positives = 130/283 (45%), Gaps = 21/283 (7%)

Query: 100 YWSMIVSLAFLYNFWVIIYRFAFQEIN-RESLVIWFCLDYMADLMYVIDILIHFRTGYLE 158
           +W  ++ +   Y+ WV  +  AF   + +  L I    D + DL + +DI++ F   Y++
Sbjct: 63  WWETLMVVLVAYSAWVYPFEVAFLNASPKRGLEI---ADNVVDLFFAVDIVLTFFVAYID 119

Query: 159 D--GVLQTDSTKLRDHYMNSTTFYIDCLCLLPLDFL-YLSIGFN------SILRLFRLVK 209
               +L  D  K+   Y+ ST F +D    +P   L YL  G        S+L L R  +
Sbjct: 120 PRTQLLVRDRKKIAVRYL-STWFLMDVASTIPFQALAYLITGTVKLNLSYSLLGLLRFWR 178

Query: 210 IYRFWAFMDRTERHTNYPNLF-RSSSLIHYLLVIFHWNGCLYHIIYKNDGFGSRNW---V 265
           + R      R E+   +   + R + L+   L + H  GCLY++I        + W   V
Sbjct: 179 LRRVKQLFTRLEKDIRFSYFWIRCARLLSVTLFLVHCAGCLYYLIADRYPHQGKTWIGAV 238

Query: 266 YGDSDTTDVVKQYLQSYYWCTLALTTIG--DLPRPRSKGEYFFVIVQLLFGLLLFATVLG 323
             +   T +  +Y+ + YW    +TT+G  DL    +  E  F+I  +LF L L A ++G
Sbjct: 239 IPNFRETSLWIRYISAIYWSITTMTTVGYGDL-HAVNTIEMIFIIFYMLFNLGLTAYLIG 297

Query: 324 HVANIVTSVSAARKEFQAKLDGVKTYMRMRRVPNALQVKVIKW 366
           ++ N+V   +    EF+  ++    ++   R+P  L+ +++ +
Sbjct: 298 NMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILAY 340

Length = 823
>gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein Back     alignment and domain information
>gnl|CDD|197516 smart00100, cNMP, Cyclic nucleotide-monophosphate binding domain Back     alignment and domain information
>gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor Back     alignment and domain information
>gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor Back     alignment and domain information
>gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor Back     alignment and domain information
>gnl|CDD|215664 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 679
KOG0500|consensus536 100.0
KOG0498|consensus727 100.0
PLN03192 823 Voltage-dependent potassium channel; Provisional 100.0
KOG0499|consensus815 100.0
KOG0501|consensus 971 100.0
KOG0614|consensus 732 99.87
KOG1113|consensus368 99.83
KOG3713|consensus477 99.75
KOG1545|consensus507 99.73
KOG1419|consensus654 99.44
PF00520200 Ion_trans: Ion transport protein calcium channel s 99.37
KOG0500|consensus 536 99.18
KOG4390|consensus632 98.86
KOG0498|consensus 727 98.85
PLN03192 823 Voltage-dependent potassium channel; Provisional 98.8
PF0788579 Ion_trans_2: Ion channel; InterPro: IPR013099 This 98.79
KOG1113|consensus 368 98.72
KOG0614|consensus 732 98.69
PRK09392236 ftrB transcriptional activator FtrB; Provisional 98.67
KOG0499|consensus 815 98.63
KOG2968|consensus 1158 98.6
PF0841277 Ion_trans_N: Ion transport protein N-terminal; Int 98.55
KOG1420|consensus 1103 98.53
PLN02868 413 acyl-CoA thioesterase family protein 98.4
cd00038115 CAP_ED effector domain of the CAP family of transc 98.38
PRK11753211 DNA-binding transcriptional dual regulator Crp; Pr 98.23
COG0664214 Crp cAMP-binding proteins - catabolite gene activa 98.15
COG2905 610 Predicted signal-transduction protein containing c 98.05
PRK10537393 voltage-gated potassium channel; Provisional 98.03
PRK10402226 DNA-binding transcriptional activator YeiL; Provis 98.02
PF0002791 cNMP_binding: Cyclic nucleotide-binding domain; In 98.02
smart00100120 cNMP Cyclic nucleotide-monophosphate binding domai 97.99
PF0002791 cNMP_binding: Cyclic nucleotide-binding domain; In 97.96
COG0664 214 Crp cAMP-binding proteins - catabolite gene activa 97.93
PRK10402 226 DNA-binding transcriptional activator YeiL; Provis 97.87
PRK11161235 fumarate/nitrate reduction transcriptional regulat 97.87
PRK11753211 DNA-binding transcriptional dual regulator Crp; Pr 97.84
PRK09392 236 ftrB transcriptional activator FtrB; Provisional 97.84
smart00100120 cNMP Cyclic nucleotide-monophosphate binding domai 97.79
PRK13918 202 CRP/FNR family transcriptional regulator; Provisio 97.7
TIGR03697 193 NtcA_cyano global nitrogen regulator NtcA, cyanoba 97.69
PRK09391230 fixK transcriptional regulator FixK; Provisional 97.67
cd00038115 CAP_ED effector domain of the CAP family of transc 97.58
PRK11161 235 fumarate/nitrate reduction transcriptional regulat 97.37
KOG2302|consensus 1956 97.37
KOG3684|consensus489 97.33
TIGR03697193 NtcA_cyano global nitrogen regulator NtcA, cyanoba 97.09
PLN032231634 Polycystin cation channel protein; Provisional 96.85
PRK09391 230 fixK transcriptional regulator FixK; Provisional 96.78
PRK13918202 CRP/FNR family transcriptional regulator; Provisio 96.57
PF01007336 IRK: Inward rectifier potassium channel; InterPro: 96.46
KOG2968|consensus 1158 96.33
KOG0501|consensus 971 95.95
KOG3542|consensus 1283 95.81
KOG4404|consensus350 95.71
KOG1418|consensus433 95.65
COG2905 610 Predicted signal-transduction protein containing c 95.6
KOG3827|consensus400 94.42
TIGR00870743 trp transient-receptor-potential calcium channel p 92.75
KOG2301|consensus 1592 92.37
KOG2302|consensus 1956 91.34
KOG4404|consensus350 90.94
KOG2301|consensus1592 90.88
KOG3193|consensus 1087 86.76
KOG3609|consensus822 84.21
PF00060148 Lig_chan: Ligand-gated ion channel; InterPro: IPR0 84.08
PF08016425 PKD_channel: Polycystin cation channel; InterPro: 81.16
>KOG0500|consensus Back     alignment and domain information 
Probab=100.00  E-value=8.7e-77  Score=608.26  Aligned_cols=425  Identities=53%  Similarity=0.925  Sum_probs=388.4

Q ss_pred             HHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhhheeEEEECCeEeeCHHHHHHHHhcCCCceehhhh
Q psy1512         106 SLAFLYNFWVIIYRFAFQEINRESLVIWFCLDYMADLMYVIDILIHFRTGYLEDGVLQTDSTKLRDHYMNSTTFYIDCLC  185 (679)
Q Consensus       106 ~~~~~~~~~~ip~~~~F~~~~~~~~~~~~~~~~i~d~~f~~Di~l~f~t~y~~~g~~v~d~~~I~~~Ylks~~f~~Dlls  185 (679)
                      .+.++|++++++.+.+|++.+......|..+|+++|++|++|++++.+++|+++|.+|+|.++.++||+.|+.|.+|++|
T Consensus         4 s~~vLYN~~~li~r~~F~di~~~y~~~wl~ld~~~D~vyllDi~v~~R~gyleqGllV~~~~Kl~~hY~~s~~f~lD~l~   83 (536)
T KOG0500|consen    4 SLGVLYNMIVLIVRAAFDDIQSSYLENWLPLDYLFDFVYLLDIIVRSRTGYLEQGLLVKDTSKLRKHYVHSTQFKLDVLS   83 (536)
T ss_pred             EEehHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhcCeeehhhHHHHHHHHHhhhhhhhhhh
Confidence            45689999999999999998888888999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcc
Q psy1512         186 LLPLDFLYLSIGFNSILRLFRLVKIYRFWAFMDRTERHTNYPNLFRSSSLIHYLLVIFHWNGCLYHIIYKNDGFGSRNWV  265 (679)
Q Consensus       186 ~lP~~~~~~~~~~~~~lrl~rllrl~rl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~H~~aCl~~~i~~~~~~~~~~Wi  265 (679)
                      ++|++++++..+..++.|++||+|++|++.++.+.+.++.+++++++.++++++++++||.||+||+++...+++.++|+
T Consensus        84 liP~D~l~~~~~~~~~~r~nRllk~yRl~~F~~rTetrT~~Pn~fri~~lv~~~~ilfHWNaClYf~iS~~~g~~~d~wv  163 (536)
T KOG0500|consen   84 LIPLDLLLFKDGSASLERLNRLLKIYRLFEFFDRTETRTTYPNAFRISKLVHYCLILFHWNACLYFLISKAIGFTTDDWV  163 (536)
T ss_pred             hcchhHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhHHHHhhhHhcCccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCC---CC-----chhhhhhHHHHHHHHHHhhcccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1512         266 YGDS---DT-----TDVVKQYLQSYYWCTLALTTIGDLPRPRSKGEYFFVIVQLLFGLLLFATVLGHVANIVTSVSAARK  337 (679)
Q Consensus       266 ~~~~---~~-----~~~~~~Y~~slywa~~tlttvGdi~~p~t~~e~i~~i~~~i~G~~~~a~~ig~i~~ii~~~~~~~~  337 (679)
                      +.+.   ..     .++..+|+.|+||+..||||+|+.++|.++.|..|.|+-.++|+++||.++|++++++++++..+.
T Consensus       164 Y~~i~d~~~~~c~~~n~~ReY~~S~YWStLTlTTiGe~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna~r~  243 (536)
T KOG0500|consen  164 YPKINDPEFATCDAGNLTREYLYSLYWSTLTLTTIGEQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNAART  243 (536)
T ss_pred             cCCccCccccccchhHHHHHHHHHHHHHhhhhhhccCCCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhhHHHH
Confidence            9643   22     348899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhcccCchhHHhhcCCCCCCCCcccccCcchhhHHHHHHhhccCcc
Q psy1512         338 EFQAKLDGVKTYMRMRRVPNALQVKVIKWFDYLWLTQKCSDEEKAVSCLPGPGSSSTKLVHGGQYELEEIAIVSNQATPN  417 (679)
Q Consensus       338 ~~~~~~~~l~~~m~~~~lp~~l~~rv~~y~~~~w~~~~~~~~~~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~  417 (679)
                      +||++|+.+++||+.|++|+++|.||.+||+|.|.+++..||+++++.|                               
T Consensus       244 EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~L-------------------------------  292 (536)
T KOG0500|consen  244 EFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLL-------------------------------  292 (536)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccccHHHHHHhC-------------------------------
Confidence            9999999999999999999999999999999999999999999999887                               


Q ss_pred             ccccCCCccccccCCCcccCcchHHHHHHHhhhhhhccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEE
Q psy1512         418 QVKYGSGPLYMSANGPKVVPDKLKAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVR  497 (679)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~l~~~Lr~ei~~~~~~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~  497 (679)
                                         |++||.||+.+++.+.|+++++|++|+++++.+|+.++++++|.|||+||++||.      
T Consensus       293 -------------------P~kL~aeIA~nvh~dTLkkV~iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdv------  347 (536)
T KOG0500|consen  293 -------------------PDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDV------  347 (536)
T ss_pred             -------------------CHHHHhHhHHHHHHHHHHhhhHHHhcchhHHHHHHHHhcceeeCCCCeEEecCcc------
Confidence                               9999999999999999999999999999999999999999999999999999999      


Q ss_pred             EeeeeEEEEEehhhHHHHHhhChhHHHHHHHHHHHHHhh-----hccCcccCCCC--CCCCCCCCcccccccccccceee
Q psy1512         498 SVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQK-----YKRTPLEKGIS--PSPFPGNRRTASVRSVGYSDLFV  570 (679)
Q Consensus       498 a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~~~~~~~~-----~~~~~~~~g~~--~~~~~~~~r~atv~A~~~~~l~~  570 (679)
                         +.+||+|.+|.+              ++++++....     ....+||.+.+  .+-..|.+|+|+|++++++++++
T Consensus       348 ---gkEMyIVk~G~L--------------~Vv~dDg~t~~~~L~~G~~FGEisIlni~g~~~gNRRtanvrSvGYSDlfv  410 (536)
T KOG0500|consen  348 ---GKEMYIVKEGKL--------------AVVADDGVTVFVTLKAGSVFGEISILNIKGNKNGNRRTANVRSVGYSDLFV  410 (536)
T ss_pred             ---cceEEEEEccEE--------------EEEecCCcEEEEEecCCceeeeeEEEEEcCcccCCcceeeeeeeccceeeE
Confidence               889999966644              3333332111     11223333332  34456899999999999999999


Q ss_pred             cccchhHHHhhcChhHhhhhHHHHHHHhhhcCC
Q psy1512         571 LSKTDMWDVLKEYPAARVRLESIAVKRLQKYKR  603 (679)
Q Consensus       571 L~r~~f~~il~~~P~~~~~l~~~~~~rl~~~~~  603 (679)
                      |+|+|+.+.|++||+.+..+.++..+.+++-+-
T Consensus       411 LskdDl~~aL~eYP~a~~~L~~kgr~iL~kd~l  443 (536)
T KOG0500|consen  411 LSKDDLWEALSEYPDARKRLEEKGRQILHKDGL  443 (536)
T ss_pred             eeHHHHHHHHHhCCHHHHHHHHHHHHHhhhccc
Confidence            999999999999999999999887776655433

>KOG0498|consensus Back     alignment and domain information
>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>KOG0499|consensus Back     alignment and domain information
>KOG0501|consensus Back     alignment and domain information
>KOG0614|consensus Back     alignment and domain information
>KOG1113|consensus Back     alignment and domain information
>KOG3713|consensus Back     alignment and domain information
>KOG1545|consensus Back     alignment and domain information
>KOG1419|consensus Back     alignment and domain information
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins Back     alignment and domain information
>KOG0500|consensus Back     alignment and domain information
>KOG4390|consensus Back     alignment and domain information
>KOG0498|consensus Back     alignment and domain information
>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] Back     alignment and domain information
>KOG1113|consensus Back     alignment and domain information
>KOG0614|consensus Back     alignment and domain information
>PRK09392 ftrB transcriptional activator FtrB; Provisional Back     alignment and domain information
>KOG0499|consensus Back     alignment and domain information
>KOG2968|consensus Back     alignment and domain information
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels Back     alignment and domain information
>KOG1420|consensus Back     alignment and domain information
>PLN02868 acyl-CoA thioesterase family protein Back     alignment and domain information
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor Back     alignment and domain information
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional Back     alignment and domain information
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] Back     alignment and domain information
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] Back     alignment and domain information
>PRK10537 voltage-gated potassium channel; Provisional Back     alignment and domain information
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional Back     alignment and domain information
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ] Back     alignment and domain information
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain Back     alignment and domain information
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ] Back     alignment and domain information
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] Back     alignment and domain information
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional Back     alignment and domain information
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional Back     alignment and domain information
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional Back     alignment and domain information
>PRK09392 ftrB transcriptional activator FtrB; Provisional Back     alignment and domain information
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain Back     alignment and domain information
>PRK13918 CRP/FNR family transcriptional regulator; Provisional Back     alignment and domain information
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial Back     alignment and domain information
>PRK09391 fixK transcriptional regulator FixK; Provisional Back     alignment and domain information
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor Back     alignment and domain information
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional Back     alignment and domain information
>KOG2302|consensus Back     alignment and domain information
>KOG3684|consensus Back     alignment and domain information
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial Back     alignment and domain information
>PLN03223 Polycystin cation channel protein; Provisional Back     alignment and domain information
>PRK09391 fixK transcriptional regulator FixK; Provisional Back     alignment and domain information
>PRK13918 CRP/FNR family transcriptional regulator; Provisional Back     alignment and domain information
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG2968|consensus Back     alignment and domain information
>KOG0501|consensus Back     alignment and domain information
>KOG3542|consensus Back     alignment and domain information
>KOG4404|consensus Back     alignment and domain information
>KOG1418|consensus Back     alignment and domain information
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] Back     alignment and domain information
>KOG3827|consensus Back     alignment and domain information
>TIGR00870 trp transient-receptor-potential calcium channel protein Back     alignment and domain information
>KOG2301|consensus Back     alignment and domain information
>KOG2302|consensus Back     alignment and domain information
>KOG4404|consensus Back     alignment and domain information
>KOG2301|consensus Back     alignment and domain information
>KOG3193|consensus Back     alignment and domain information
>KOG3609|consensus Back     alignment and domain information
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory Back     alignment and domain information
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query679
3etq_A204 X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 7e-09
1q3e_A207 Hcn2j 443-645 In The Presence Of Cgmp Length = 207 9e-08
3ffq_A202 Hcn2i 443-640 Apo-State Length = 202 9e-08
3u10_A210 Tetramerization Dynamics Of The C-Terminus Underlie 1e-07
3u0z_A210 Tetramerization Dynamics Of The C-Terminus Underlie 2e-07
2q0a_A200 Structure And Rearrangements In The Carboxy-Termina 2e-07
3u11_A210 Tetramerization Dynamics Of The C-Terminus Underlie 4e-07
3otf_A220 Structural Basis For The Camp-Dependent Gating In H 5e-07
3bpz_A202 Hcn2-I 443-460 E502k In The Presence Of Camp Length 7e-07
1q43_A207 Hcn2i 443-640 In The Presence Of Camp, Selenomethio 3e-06
4hbn_A205 Crystal Structure Of The Human Hcn4 Channel C-termi 3e-06
2ptm_A198 Structure And Rearrangements In The Carboxy-Termina 1e-05
>pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C- Terminal Region From Amino Acids 443-630 Including C508n, C584s, And C601s Mutations Length = 204 Back     alignment and structure 
Iteration: 1

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 55/244 (22%), Positives = 93/244 (38%), Gaps = 91/244 (37%)
Query: 333 SAARKEFQAKLDGVKTYMRMRRVPNALQVKVIKWFDYLWLTQKCSDEEKAVSCLPGPGSS 392
            ++R+++Q K   V+ YM   ++P   + K+  ++++ +   K  DE+  +  L GP   
Sbjct: 7   DSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRY-QGKMFDEDSILGELNGPLR- 64
Query: 393 STKLVHGGQYELEEIAIVSNQATPNQVKYGSGPLYMSANGPKVVPDKLKAEIAINVHLDT 452
                       EEI   +N+                         KL A + +      
Sbjct: 65  ------------EEIVNFNNR-------------------------KLVASMPL------ 81
Query: 453 LKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGN---------------------- 490
                 F N +  F+  ++ +L+  +F PGDYI R+G                       
Sbjct: 82  ------FANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKE 135
Query: 491 ------------------RRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVK 532
                             RRTASVR+  YS L+ LS  +  +VL+EYP  R   E++A+ 
Sbjct: 136 MKLSDGSYFGEISLLTRGRRTASVRADTYSRLYSLSVDNFNEVLEEYPMMRRAFETVAID 195
Query: 533 RLQK 536
           RL +
Sbjct: 196 RLDR 199
>pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp Length = 207 Back     alignment and structure
>pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State Length = 202 Back     alignment and structure
>pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 Back     alignment and structure
>pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 Back     alignment and structure
>pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal Region Of Spih Channels Length = 200 Back     alignment and structure
>pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 Back     alignment and structure
>pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human Hcn4 Channel Length = 220 Back     alignment and structure
>pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp Length = 202 Back     alignment and structure
>pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine Derivative Length = 207 Back     alignment and structure
>pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus Carrying The S672r Mutation Length = 205 Back     alignment and structure
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal Region Of Spih Channels Length = 198 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query679
3bpz_A202 Potassium/sodium hyperpolarization-activated cycli 5e-46
3bpz_A202 Potassium/sodium hyperpolarization-activated cycli 2e-11
2ptm_A198 Hyperpolarization-activated (IH) channel; ION chan 2e-45
2ptm_A198 Hyperpolarization-activated (IH) channel; ION chan 2e-12
3ukn_A212 Novel protein similar to vertebrate potassium VOL 1e-43
3ukn_A212 Novel protein similar to vertebrate potassium VOL 2e-10
4f8a_A160 Potassium voltage-gated channel subfamily H membe; 2e-28
4f8a_A160 Potassium voltage-gated channel subfamily H membe; 7e-12
1wgp_A137 Probable cyclic nucleotide-gated ION channel 6; cy 2e-21
1wgp_A137 Probable cyclic nucleotide-gated ION channel 6; cy 2e-10
1vp6_A138 CNBD, cyclic-nucleotide binding domain of mesorhiz 2e-19
1vp6_A138 CNBD, cyclic-nucleotide binding domain of mesorhiz 2e-08
3shr_A299 CGMP-dependent protein kinase 1; cyclic nucleotide 1e-13
3shr_A299 CGMP-dependent protein kinase 1; cyclic nucleotide 8e-05
3of1_A246 CAMP-dependent protein kinase regulatory subunit; 2e-13
3tnp_B416 CAMP-dependent protein kinase type II-beta regula 1e-12
3tnp_B416 CAMP-dependent protein kinase type II-beta regula 4e-05
4din_B381 CAMP-dependent protein kinase type I-beta regulat 8e-11
2qcs_B291 CAMP-dependent protein kinase type I-alpha regula 9e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
3gyd_A187 CNMP-BD protein, cyclic nucleotide-binding domain; 2e-08
3gyd_A187 CNMP-BD protein, cyclic nucleotide-binding domain; 5e-07
3ocp_A139 PRKG1 protein; serine/threonine kinase, TF2I and I 6e-08
3ocp_A139 PRKG1 protein; serine/threonine kinase, TF2I and I 3e-06
2d93_A134 RAP guanine nucleotide exchange factor 6; CNMP_bin 2e-07
3idb_B161 CAMP-dependent protein kinase type II-beta regulat 2e-07
3idb_B161 CAMP-dependent protein kinase type II-beta regulat 8e-07
3mdp_A142 Cyclic nucleotide-binding domain (CNMP-BD) protei; 2e-07
3mdp_A142 Cyclic nucleotide-binding domain (CNMP-BD) protei; 8e-06
1o7f_A469 CAMP-dependent RAP1 guanine-nucleotide exchange fa 3e-07
1o7f_A 469 CAMP-dependent RAP1 guanine-nucleotide exchange fa 3e-04
2pqq_A149 Putative transcriptional regulator; APC7345, strep 5e-07
2pqq_A149 Putative transcriptional regulator; APC7345, strep 9e-06
3pna_A154 CAMP-dependent protein kinase type I-alpha regula 2e-06
3pna_A154 CAMP-dependent protein kinase type I-alpha regula 8e-06
2z69_A154 DNR protein; beta barrel, dimerization helix, tran 5e-06
2z69_A154 DNR protein; beta barrel, dimerization helix, tran 8e-06
2z69_A154 DNR protein; beta barrel, dimerization helix, tran 6e-04
1zyb_A 232 Transcription regulator, CRP family; NP_813211.1, 6e-06
4ava_A 333 Lysine acetyltransferase; allosteric regulation, d 7e-06
4ava_A333 Lysine acetyltransferase; allosteric regulation, d 2e-04
3d0s_A 227 Transcriptional regulatory protein; CAMP receptor 1e-05
3ryp_A 210 Catabolite gene activator; CAMP receptor protein ( 2e-05
3ryp_A210 Catabolite gene activator; CAMP receptor protein ( 3e-04
3kcc_A 260 Catabolite gene activator; helix-turn-helix, CAMP, 2e-05
3kcc_A260 Catabolite gene activator; helix-turn-helix, CAMP, 2e-04
3e97_A 231 Transcriptional regulator, CRP/FNR family; YP_6044 3e-05
3e97_A231 Transcriptional regulator, CRP/FNR family; YP_6044 7e-04
4ev0_A 216 Transcription regulator, CRP family; CAMP binding, 3e-05
3iwz_A 230 CAP-like, catabolite activation-like protein; XCC, 6e-05
3dkw_A 227 DNR protein; CRP-FNR, HTH, beta barrel, dimerizati 7e-05
2oz6_A 207 Virulence factor regulator; winged helix, helix-tu 9e-05
2fmy_A 220 COOA, carbon monoxide oxidation system transcripti 1e-04
3fx3_A 237 Cyclic nucleotide-binding protein; helix_TURN_heli 1e-04
3beh_A355 MLL3241 protein; transmembrane protein, membrane p 3e-04
3e6c_C 250 CPRK, cyclic nucleotide-binding protein; CPRK, hal 4e-04
1ft9_A 222 Carbon monoxide oxidation system transcription reg 5e-04
3la7_A 243 Global nitrogen regulator; activator, DNA-binding, 7e-04
1o5l_A 213 Transcriptional regulator, CRP family; TM1171, str 8e-04
2bgc_A 238 PRFA; bacterial infection, human pathogen, transcr 8e-04
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202 Back     alignment and structure
 Score =  161 bits (409), Expect = 5e-46
 Identities = 47/250 (18%), Positives = 90/250 (36%), Gaps = 91/250 (36%)

Query: 330 TSVSAARKEFQAKLDGVKTYMRMRRVPNALQVKVIKWFDYLWLTQKCSDEEKAVSCLPGP 389
           +++ ++R+++Q K   V+ YM   ++P   + K+  ++++ +   K  DE+  +  L   
Sbjct: 2   SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRY-QGKMFDEDSILGELN-- 58

Query: 390 GSSSTKLVHGGQYELEEIAIVSNQATPNQVKYGSGPLYMSANGPKVVPDKLKAEIAINVH 449
                                                             L+ +I     
Sbjct: 59  ------------------------------------------------GPLREKIVNFNC 70

Query: 450 LDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKG-------------------- 489
              +  + +F N +  F+  ++ +L+  +F PGDYI R+G                    
Sbjct: 71  RKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKG 130

Query: 490 --------------------NRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESI 529
                                RRTASVR+  Y  L+ LS  +  +VL+EYP  R   E++
Sbjct: 131 NKEMKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETV 190

Query: 530 AVKRLQKYKR 539
           A+ RL +  +
Sbjct: 191 AIDRLDRIGK 200
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202 Back     alignment and structure
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198 Back     alignment and structure
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198 Back     alignment and structure
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212 Back     alignment and structure
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212 Back     alignment and structure
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Length = 160 Back     alignment and structure
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Length = 160 Back     alignment and structure
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Length = 137 Back     alignment and structure
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Length = 137 Back     alignment and structure
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Length = 138 Back     alignment and structure
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Length = 138 Back     alignment and structure
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 Back     alignment and structure
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 Back     alignment and structure
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 Back     alignment and structure
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187 Back     alignment and structure
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187 Back     alignment and structure
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Length = 139 Back     alignment and structure
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Length = 139 Back     alignment and structure
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Length = 134 Back     alignment and structure
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Length = 161 Back     alignment and structure
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Length = 161 Back     alignment and structure
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142 Back     alignment and structure
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142 Back     alignment and structure
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469 Back     alignment and structure
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469 Back     alignment and structure
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149 Back     alignment and structure
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149 Back     alignment and structure
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Length = 154 Back     alignment and structure
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Length = 154 Back     alignment and structure
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154 Back     alignment and structure
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154 Back     alignment and structure
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154 Back     alignment and structure
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Length = 232 Back     alignment and structure
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Length = 333 Back     alignment and structure
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Length = 333 Back     alignment and structure
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Length = 227 Back     alignment and structure
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... Length = 210 Back     alignment and structure
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... Length = 210 Back     alignment and structure
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Length = 260 Back     alignment and structure
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Length = 260 Back     alignment and structure
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Length = 231 Back     alignment and structure
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Length = 231 Back     alignment and structure
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Length = 216 Back     alignment and structure
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} Length = 230 Back     alignment and structure
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Length = 227 Back     alignment and structure
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 Length = 207 Back     alignment and structure
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Length = 220 Back     alignment and structure
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Length = 237 Back     alignment and structure
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Length = 355 Back     alignment and structure
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Length = 250 Back     alignment and structure
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Length = 222 Back     alignment and structure
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* Length = 243 Back     alignment and structure
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Length = 213 Back     alignment and structure
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A Length = 238 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query679
3beh_A355 MLL3241 protein; transmembrane protein, membrane p 99.97
3ukn_A212 Novel protein similar to vertebrate potassium VOL 99.94
2ptm_A198 Hyperpolarization-activated (IH) channel; ION chan 99.93
3bpz_A202 Potassium/sodium hyperpolarization-activated cycli 99.93
1orq_C223 Potassium channel; voltage-dependent, KVAP, FAB co 99.88
3shr_A299 CGMP-dependent protein kinase 1; cyclic nucleotide 99.86
2r9r_B514 Paddle chimera voltage gated potassium channel KV; 99.84
3of1_A246 CAMP-dependent protein kinase regulatory subunit; 99.83
2qcs_B291 CAMP-dependent protein kinase type I-alpha regula 99.83
4din_B381 CAMP-dependent protein kinase type I-beta regulat 99.82
3tnp_B416 CAMP-dependent protein kinase type II-beta regula 99.81
4f7z_A 999 RAP guanine nucleotide exchange factor 4; cyclic n 99.78
1o7f_A 469 CAMP-dependent RAP1 guanine-nucleotide exchange fa 99.71
2a9h_A155 Voltage-gated potassium channel; potassium channel 99.57
4f8a_A160 Potassium voltage-gated channel subfamily H membe; 99.46
2ih3_C122 Voltage-gated potassium channel; ION channel D-ami 99.43
3vou_A148 ION transport 2 domain protein, voltage-gated SOD 99.39
4h33_A137 LMO2059 protein; bilayers, KVLM, lipidic cubic pha 99.35
3rvy_A285 ION transport protein; tetrameric ION channel, vol 99.34
3ocp_A139 PRKG1 protein; serine/threonine kinase, TF2I and I 99.23
3eff_K139 Voltage-gated potassium channel; FULL length KCSA, 99.22
3mdp_A142 Cyclic nucleotide-binding domain (CNMP-BD) protei; 99.21
1vp6_A138 CNBD, cyclic-nucleotide binding domain of mesorhiz 99.18
2z69_A154 DNR protein; beta barrel, dimerization helix, tran 99.12
2pqq_A149 Putative transcriptional regulator; APC7345, strep 99.11
3idb_B161 CAMP-dependent protein kinase type II-beta regulat 99.07
3gyd_A187 CNMP-BD protein, cyclic nucleotide-binding domain; 99.02
2k1e_A103 Water soluble analogue of potassium channel, KCSA; 99.02
2q67_A114 Potassium channel protein; inverted teepee, helix 99.0
2d93_A134 RAP guanine nucleotide exchange factor 6; CNMP_bin 98.97
3dkw_A227 DNR protein; CRP-FNR, HTH, beta barrel, dimerizati 98.96
3pna_A154 CAMP-dependent protein kinase type I-alpha regula 98.94
3ouf_A97 Potassium channel protein; ION channel, membrane, 98.92
3dv8_A220 Transcriptional regulator, CRP/FNR family; cyclic 98.91
3e97_A231 Transcriptional regulator, CRP/FNR family; YP_6044 98.9
1wgp_A137 Probable cyclic nucleotide-gated ION channel 6; cy 98.9
3d0s_A227 Transcriptional regulatory protein; CAMP receptor 98.88
4ava_A 333 Lysine acetyltransferase; allosteric regulation, d 98.88
4ev0_A216 Transcription regulator, CRP family; CAMP binding, 98.87
3shr_A299 CGMP-dependent protein kinase 1; cyclic nucleotide 98.87
1zyb_A232 Transcription regulator, CRP family; NP_813211.1, 98.86
3dn7_A194 Cyclic nucleotide binding regulatory protein; stru 98.84
3fx3_A237 Cyclic nucleotide-binding protein; helix_TURN_heli 98.83
3ldc_A82 Calcium-gated potassium channel MTHK; transmembran 98.82
4dxw_A229 Navrh, ION transport protein; tetrameric, voltage- 98.76
2gau_A232 Transcriptional regulator, CRP/FNR family; structu 98.76
3of1_A246 CAMP-dependent protein kinase regulatory subunit; 98.75
3iwz_A230 CAP-like, catabolite activation-like protein; XCC, 98.75
2qcs_B291 CAMP-dependent protein kinase type I-alpha regula 98.72
3tnp_B416 CAMP-dependent protein kinase type II-beta regula 98.69
3pjs_K166 KCSA, voltage-gated potassium channel; ION channel 98.69
1o7f_A469 CAMP-dependent RAP1 guanine-nucleotide exchange fa 98.68
4din_B381 CAMP-dependent protein kinase type I-beta regulat 98.67
2fmy_A220 COOA, carbon monoxide oxidation system transcripti 98.66
3cf6_E 694 RAP guanine nucleotide exchange factor (GEF) 4; EP 98.63
3ryp_A210 Catabolite gene activator; CAMP receptor protein ( 98.63
1ft9_A222 Carbon monoxide oxidation system transcription reg 98.62
2ptm_A198 Hyperpolarization-activated (IH) channel; ION chan 98.57
3idb_B161 CAMP-dependent protein kinase type II-beta regulat 98.57
3ocp_A139 PRKG1 protein; serine/threonine kinase, TF2I and I 98.55
2oz6_A207 Virulence factor regulator; winged helix, helix-tu 98.53
3mdp_A142 Cyclic nucleotide-binding domain (CNMP-BD) protei; 98.49
1xl4_A301 Inward rectifier potassium channel; integral membr 98.49
3pna_A154 CAMP-dependent protein kinase type I-alpha regula 98.48
3kcc_A260 Catabolite gene activator; helix-turn-helix, CAMP, 98.47
3bpz_A202 Potassium/sodium hyperpolarization-activated cycli 98.47
4f8a_A160 Potassium voltage-gated channel subfamily H membe; 98.44
2kyh_A147 KVAP, voltage-gated potassium channel; ION channel 98.43
3gyd_A187 CNMP-BD protein, cyclic nucleotide-binding domain; 98.43
1o5l_A213 Transcriptional regulator, CRP family; TM1171, str 98.4
3ukn_A212 Novel protein similar to vertebrate potassium VOL 98.37
2d93_A134 RAP guanine nucleotide exchange factor 6; CNMP_bin 98.36
2pqq_A149 Putative transcriptional regulator; APC7345, strep 98.36
1p7b_A333 Integral membrane channel and cytosolic domains; t 98.34
3e6c_C250 CPRK, cyclic nucleotide-binding protein; CPRK, hal 98.34
1ors_C132 Potassium channel; voltage-dependent, voltage sens 98.33
2qks_A321 KIR3.1-prokaryotic KIR channel chimera; G-protein 98.31
1vp6_A138 CNBD, cyclic-nucleotide binding domain of mesorhiz 98.31
2z69_A154 DNR protein; beta barrel, dimerization helix, tran 98.31
4ava_A 333 Lysine acetyltransferase; allosteric regulation, d 98.28
4f7z_A 999 RAP guanine nucleotide exchange factor 4; cyclic n 98.28
1wgp_A137 Probable cyclic nucleotide-gated ION channel 6; cy 98.27
3um7_A309 Potassium channel subfamily K member 4; potassium 98.26
3fx3_A 237 Cyclic nucleotide-binding protein; helix_TURN_heli 98.25
3um7_A309 Potassium channel subfamily K member 4; potassium 98.23
3e97_A 231 Transcriptional regulator, CRP/FNR family; YP_6044 98.18
3dn7_A194 Cyclic nucleotide binding regulatory protein; stru 98.17
4gx0_A 565 TRKA domain protein; membrane protein, ION channel 98.16
3b02_A 195 Transcriptional regulator, CRP family; structural 98.13
3d0s_A 227 Transcriptional regulatory protein; CAMP receptor 98.13
1zyb_A232 Transcription regulator, CRP family; NP_813211.1, 98.12
4ev0_A 216 Transcription regulator, CRP family; CAMP binding, 98.09
2gau_A 232 Transcriptional regulator, CRP/FNR family; structu 98.08
3iwz_A 230 CAP-like, catabolite activation-like protein; XCC, 98.07
3sya_A340 G protein-activated inward rectifier potassium CH; 98.06
2oz6_A207 Virulence factor regulator; winged helix, helix-tu 98.06
3ryp_A210 Catabolite gene activator; CAMP receptor protein ( 98.05
3kcc_A260 Catabolite gene activator; helix-turn-helix, CAMP, 98.03
3la7_A243 Global nitrogen regulator; activator, DNA-binding, 98.0
3dkw_A 227 DNR protein; CRP-FNR, HTH, beta barrel, dimerizati 97.97
3dv8_A 220 Transcriptional regulator, CRP/FNR family; cyclic 97.96
2bgc_A238 PRFA; bacterial infection, human pathogen, transcr 97.95
1o5l_A213 Transcriptional regulator, CRP family; TM1171, str 97.93
3ukm_A280 Potassium channel subfamily K member 1; membrane p 97.91
3spc_A343 Inward-rectifier K+ channel KIR2.2; PIP, membrane 97.83
3ukm_A280 Potassium channel subfamily K member 1; membrane p 97.82
3la7_A 243 Global nitrogen regulator; activator, DNA-binding, 97.74
2zcw_A 202 TTHA1359, transcriptional regulator, FNR/CRP famil 97.73
3e6c_C 250 CPRK, cyclic nucleotide-binding protein; CPRK, hal 97.73
3beh_A355 MLL3241 protein; transmembrane protein, membrane p 97.7
2bgc_A 238 PRFA; bacterial infection, human pathogen, transcr 97.68
2fmy_A 220 COOA, carbon monoxide oxidation system transcripti 97.56
3b02_A195 Transcriptional regulator, CRP family; structural 97.53
1lnq_A336 MTHK channels, potassium channel related protein; 97.46
1ft9_A 222 Carbon monoxide oxidation system transcription reg 97.23
2zcw_A202 TTHA1359, transcriptional regulator, FNR/CRP famil 97.04
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Back     alignment and structure
Probab=99.97  E-value=1.2e-32  Score=294.09  Aligned_cols=346  Identities=16%  Similarity=0.146  Sum_probs=136.1

Q ss_pred             EcCCChhHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhhheeEEEECCeEeeCHHHHH
Q psy1512          91 FDPAGRFSYYWSMIVSLAFLYNFWVIIYRFAFQEINRESLVIWFCLDYMADLMYVIDILIHFRTGYLEDGVLQTDSTKLR  170 (679)
Q Consensus        91 i~P~s~~~~~W~~i~~~~~~~~~~~ip~~~~F~~~~~~~~~~~~~~~~i~d~~f~~Di~l~f~t~y~~~g~~v~d~~~I~  170 (679)
                      +.|+|+.   ++++++++++.+++++... .++.........+..++.++-++|.+|+++++....            -.
T Consensus         3 ~~p~s~~---f~~~~~~~i~ls~~~~~~~-t~~~~~~~~~~~~~~~~~~~~~~f~~e~~~r~~~~~------------~~   66 (355)
T 3beh_A            3 VLPFLRI---YAPLNAVLAAPGLLAVAAL-TIPDMSGRSRLALAALLAVIWGAYLLQLAATLLKRR------------AG   66 (355)
T ss_dssp             ----CCS---SSSHHHHHHHHHHHHHHHH-TSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------------SC
T ss_pred             CCchhHH---HHHHHHHHHHHHHHHHHHH-cccchhhhHHHHHHHHHhHHHHHHHHHHHHhccccc------------cc
Confidence            4577764   4666777777777776665 333322222222334555665668999999885321            02


Q ss_pred             HHHhcCCCceehhhhc-cchHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHHHHHH
Q psy1512         171 DHYMNSTTFYIDCLCL-LPLDFLYLS-IGFNSILRLFRLVKIYRFWAFMDRTERHTNYPNLFRSSSLIHYLLVIFHWNGC  248 (679)
Q Consensus       171 ~~Ylks~~f~~Dlls~-lP~~~~~~~-~~~~~~lrl~rllrl~rl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~H~~aC  248 (679)
                      ..|.+++|+++|++++ +|+..+... ....+++|++|++|+.|..+.++.+.... ....-.+..++..++++.|++||
T Consensus        67 ~~~~~~~~~i~Dl~~i~~p~~~~~~~~~~~~r~lr~~R~lrl~r~~~~~~~l~~~l-~~~~~~l~~~~~~~~~~~~~~a~  145 (355)
T 3beh_A           67 VVRDRTPKIAIDVLAVLVPLAAFLLDGSPDWSLYCAVWLLKPLRDSTFFPVLGRVL-ANEARNLIGVTTLFGVVLFAVAL  145 (355)
T ss_dssp             SSCCCHHHHHHHHHHHHHHHHHHHSCCSGGGGGGGGGGGSHHHHTCSSHHHHHHHH-HHTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeccCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            2355667999999998 698765321 11223333333333333222222222211 11223345566677788999999


Q ss_pred             HHHHHHhcCCCCCCCcccCCCCCchhhhhhHHHHHHHHHHhhccc--CCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1512         249 LYHIIYKNDGFGSRNWVYGDSDTTDVVKQYLQSYYWCTLALTTIG--DLPRPRSKGEYFFVIVQLLFGLLLFATVLGHVA  326 (679)
Q Consensus       249 l~~~i~~~~~~~~~~Wi~~~~~~~~~~~~Y~~slywa~~tlttvG--di~~p~t~~e~i~~i~~~i~G~~~~a~~ig~i~  326 (679)
                      ++|.+....             +.+.+..|.+|+||+++||||+|  |+ .|.|..|+++++++|++|++++++++|.++
T Consensus       146 ~~~~~e~~~-------------~~~~f~~~~~s~y~~~~t~ttvGygd~-~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~  211 (355)
T 3beh_A          146 AAYVIERDI-------------QPEKFGSIPQAMWWAVVTLSTTGYGDT-IPQSFAGRVLAGAVMMSGIGIFGLWAGILA  211 (355)
T ss_dssp             HHHHHHTTT-------------CHHHHSSHHHHHHHHHHHHTTCCCSSS-CCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhcCC-------------CCcccccHHHHHHHHHhheeecCCCCC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999886432             12346789999999999999997  88 699999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhcccCchhHHhhcCCCCCCCCcccccCcchhhHH
Q psy1512         327 NIVTSVSAARKEFQAKLDGVKTYMRMRRVPNALQVKVIKWFDYLWLTQKCSDEEKAVSCLPGPGSSSTKLVHGGQYELEE  406 (679)
Q Consensus       327 ~ii~~~~~~~~~~~~~~~~l~~~m~~~~lp~~l~~rv~~y~~~~w~~~~~~~~~~~l~~lp~~~~~~~~~~~~~~~~~~~  406 (679)
                      +.+.+..++                            +++.+                                      
T Consensus       212 ~~~~~~~~~----------------------------~~~~~--------------------------------------  225 (355)
T 3beh_A          212 TGFYQEVRR----------------------------GDFVR--------------------------------------  225 (355)
T ss_dssp             HHHHHHHHH----------------------------HHHHH--------------------------------------
T ss_pred             HHHHHHHHH----------------------------Hhhcc--------------------------------------
Confidence            877542110                            00100                                      


Q ss_pred             HHHHhhccCccccccCCCccccccCCCcccCcchHHHHHHHhhhhhhccccccccCChhHHHHHHHhccceEeCCCCEEE
Q psy1512         407 IAIVSNQATPNQVKYGSGPLYMSANGPKVVPDKLKAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYIC  486 (679)
Q Consensus       407 ~~~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~Lr~ei~~~~~~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~  486 (679)
                                                                +.+.++++|+|++++++++++++..++.+.|+|||+|+
T Consensus       226 ------------------------------------------~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~  263 (355)
T 3beh_A          226 ------------------------------------------NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVIC  263 (355)
T ss_dssp             ------------------------------------------HHC-----------------------------------
T ss_pred             ------------------------------------------cchhhhcccccccCCHHHHHHHHHhceEEEECCCCEEE
Confidence                                                      12346678999999999999999999999999999999


Q ss_pred             EeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHHHHHHHHhhhccCcccCCCCCCCCCCCCccccccccccc
Q psy1512         487 RKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYS  566 (679)
Q Consensus       487 ~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~atv~A~~~~  566 (679)
                      ++||+         .+.+|+|.+|.+.....+                 ......|+..++.+++.+.||+++++|.++|
T Consensus       264 ~~G~~---------~~~ly~I~~G~v~v~~~~-----------------~~~l~~G~~fGe~~~l~~~~~~~~~~A~~~~  317 (355)
T 3beh_A          264 RIGEP---------GDRMFFVVEGSVSVATPN-----------------PVELGPGAFFGEMALISGEPRSATVSAATTV  317 (355)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eCCCc---------CceEEEEEeeEEEEEECC-----------------eeEECCCCEEeehHHhCCCCcceEEEECccE
Confidence            99998         789999988876544321                 0122234443444778899999999999999


Q ss_pred             ceeecccchhHHHhhcChhHhhhhHHHHHHHhhhc
Q psy1512         567 DLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKY  601 (679)
Q Consensus       567 ~l~~L~r~~f~~il~~~P~~~~~l~~~~~~rl~~~  601 (679)
                      +++.|++++|.++++++|++.+.+.+.+.+|++..
T Consensus       318 ~l~~i~~~~f~~ll~~~p~~~~~l~~~l~~rl~~~  352 (355)
T 3beh_A          318 SLLSLHSADFQMLCSSSPEIAEIFRKTALERRGAA  352 (355)
T ss_dssp             -----------------------------------
T ss_pred             EEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999988887654
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Back     alignment and structure
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Back     alignment and structure
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Back     alignment and structure
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Back     alignment and structure
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Back     alignment and structure
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Back     alignment and structure
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Back     alignment and structure
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Back     alignment and structure
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E Back     alignment and structure
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Back     alignment and structure
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Back     alignment and structure
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Back     alignment and structure
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Back     alignment and structure
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Back     alignment and structure
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A Back     alignment and structure
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* Back     alignment and structure
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Back     alignment and structure
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Back     alignment and structure
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Back     alignment and structure
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Back     alignment and structure
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Back     alignment and structure
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Back     alignment and structure
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Back     alignment and structure
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Back     alignment and structure
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Back     alignment and structure
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Back     alignment and structure
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Back     alignment and structure
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Back     alignment and structure
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Back     alignment and structure
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Back     alignment and structure
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Back     alignment and structure
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Back     alignment and structure
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Back     alignment and structure
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Back     alignment and structure
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Back     alignment and structure
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Back     alignment and structure
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Back     alignment and structure
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Back     alignment and structure
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} Back     alignment and structure
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Back     alignment and structure
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A Back     alignment and structure
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} Back     alignment and structure
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Back     alignment and structure
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} Back     alignment and structure
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Back     alignment and structure
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Back     alignment and structure
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Back     alignment and structure
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Back     alignment and structure
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Back     alignment and structure
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} Back     alignment and structure
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... Back     alignment and structure
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Back     alignment and structure
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Back     alignment and structure
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Back     alignment and structure
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Back     alignment and structure
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 Back     alignment and structure
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Back     alignment and structure
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Back     alignment and structure
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Back     alignment and structure
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Back     alignment and structure
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Back     alignment and structure
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix} Back     alignment and structure
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Back     alignment and structure
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Back     alignment and structure
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Back     alignment and structure
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Back     alignment and structure
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Back     alignment and structure
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Back     alignment and structure
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1 Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Back     alignment and structure
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Back     alignment and structure
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Back     alignment and structure
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Back     alignment and structure
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E Back     alignment and structure
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Back     alignment and structure
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Back     alignment and structure
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Back     alignment and structure
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} Back     alignment and structure
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* Back     alignment and structure
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A Back     alignment and structure
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Back     alignment and structure
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Back     alignment and structure
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Back     alignment and structure
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 Back     alignment and structure
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} Back     alignment and structure
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Back     alignment and structure
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 Back     alignment and structure
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... Back     alignment and structure
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Back     alignment and structure
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* Back     alignment and structure
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Back     alignment and structure
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Back     alignment and structure
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A Back     alignment and structure
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* Back     alignment and structure
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} Back     alignment and structure
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Back     alignment and structure
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Back     alignment and structure
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A Back     alignment and structure
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Back     alignment and structure
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A Back     alignment and structure
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Back     alignment and structure
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Back     alignment and structure
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 679
d1q3ea_193 b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus mu 3e-13
d1q3ea_193 b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus mu 8e-06
d1ne6a2132 b.82.3.2 (A:245-376) Regulatory subunit of Protein 3e-10
d1vp6a_133 b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizo 5e-10
d1cx4a2147 b.82.3.2 (A:266-412) Regulatory subunit of Protein 9e-10
d1cx4a1136 b.82.3.2 (A:130-265) Regulatory subunit of Protein 1e-09
d1ne6a1136 b.82.3.2 (A:109-244) Regulatory subunit of Protein 2e-09
d1wgpa_137 b.82.3.2 (A:) Probable cyclic nucleotide-gated ion 4e-08
d1o7fa2155 b.82.3.2 (A:13-167) Regulatory domain of Epac2, do 5e-08
d1lnqa280 f.14.1.1 (A:19-98) Potassium channel-related prote 2e-07
d1o7fa3124 b.82.3.2 (A:322-445) Regulatory domain of Epac2, d 4e-06
d2gaua2142 b.82.3.2 (A:10-151) Transcriptional regulator PG03 1e-05
d2oz6a2134 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protei 9e-04
d1xl4a2116 f.14.1.1 (A:23-138) Inward rectifier potassium cha 0.001
d1p7ba2116 f.14.1.1 (A:36-151) Inward rectifier potassium cha 0.001
d1r3jc_103 f.14.1.1 (C:) Potassium channel protein {Streptomy 0.002
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Length = 193 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: HCN pacemaker channel
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.6 bits (161), Expect = 3e-13
 Identities = 39/203 (19%), Positives = 78/203 (38%), Gaps = 11/203 (5%)

Query: 334 AARKEFQAKLDGVKTYMRMRRVPNALQVKVIKWFDYLWLTQKCSDEEKAVSCLPGPGSSS 393
           ++R+++Q K   V+ YM   ++P   + K+  ++++ +  +   DE+  +  L GP    
Sbjct: 2   SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMF-DEDSILGELNGPLREE 60

Query: 394 TKLVHGGQYELEEIAIVSNQATPNQVKYGSGPLYMSANGPKVVPDKLKAEIAINVHLDTL 453
                  +  +  + + +N          +   +        +  +      +      +
Sbjct: 61  IVN-FNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGV 119

Query: 454 KRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMW 513
             V    N E                  G+       RRTASVR+  Y  L+ LS  +  
Sbjct: 120 VSVLTKGNKEMKLSDGSYF---------GEICLLTRGRRTASVRADTYCRLYSLSVDNFN 170

Query: 514 DVLKEYPAARVRLESIAVKRLQK 536
           +VL+EYP  R   E++A+ RL +
Sbjct: 171 EVLEEYPMMRRAFETVAIDRLDR 193
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Length = 193 Back     information, alignment and structure
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 132 Back     information, alignment and structure
>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Length = 133 Back     information, alignment and structure
>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 147 Back     information, alignment and structure
>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136 Back     information, alignment and structure
>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 136 Back     information, alignment and structure
>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 137 Back     information, alignment and structure
>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 155 Back     information, alignment and structure
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80 Back     information, alignment and structure
>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 124 Back     information, alignment and structure
>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Length = 142 Back     information, alignment and structure
>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} Length = 134 Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 116 Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Length = 116 Back     information, alignment and structure
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 103 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query679
d1q3ea_193 HCN pacemaker channel {Mouse (Mus musculus) [TaxId 99.93
d1vp6a_133 Putative ion channel CnbD {Mesorhizobium loti [Tax 99.35
d1cx4a2147 Regulatory subunit of Protein kinase A {Rat (Rattu 99.32
d1o7fa3124 Regulatory domain of Epac2, domains 1 and 3 {Mouse 99.3
d1ne6a1136 Regulatory subunit of Protein kinase A {Cow (Bos t 99.29
d1o7fa2155 Regulatory domain of Epac2, domains 1 and 3 {Mouse 99.26
d1r3jc_103 Potassium channel protein {Streptomyces coelicolor 99.24
d1wgpa_137 Probable cyclic nucleotide-gated ion channel 6 {Th 99.23
d1cx4a1136 Regulatory subunit of Protein kinase A {Rat (Rattu 99.23
d1ne6a2132 Regulatory subunit of Protein kinase A {Cow (Bos t 99.2
d1zyba2147 Probable transcription regulator BT4300, N-termina 99.16
d1xl4a2116 Inward rectifier potassium channel kirbac3.1 {Magn 98.94
d2gaua2142 Transcriptional regulator PG0396, N-terminal domai 98.88
d1ne6a1136 Regulatory subunit of Protein kinase A {Cow (Bos t 98.82
d1p7ba2116 Inward rectifier potassium channel Kirbac1.1 {Burk 98.8
d1cx4a1136 Regulatory subunit of Protein kinase A {Rat (Rattu 98.75
d1i5za2132 Catabolite gene activator protein, N-terminal doma 98.74
d1o7fa3124 Regulatory domain of Epac2, domains 1 and 3 {Mouse 98.71
d1ft9a2132 CO-sensing protein CooA, N-terminal domain {Rhodos 98.71
d1cx4a2147 Regulatory subunit of Protein kinase A {Rat (Rattu 98.66
d3e5ua2139 Chlorophenol reduction protein CprK {Desulfitobact 98.64
d1wgpa_137 Probable cyclic nucleotide-gated ion channel 6 {Th 98.63
d2oz6a2134 Cyclic AMP receptor-like protein Vfr {Pseudomonas 98.61
d1ne6a2132 Regulatory subunit of Protein kinase A {Cow (Bos t 98.55
d1vp6a_133 Putative ion channel CnbD {Mesorhizobium loti [Tax 98.55
d1o7fa2155 Regulatory domain of Epac2, domains 1 and 3 {Mouse 98.51
d1q3ea_193 HCN pacemaker channel {Mouse (Mus musculus) [TaxId 98.5
d1o5la1129 CRP-like transcriptional regulator TM1171, N-termi 98.47
d2zcwa2112 Transcriptional regulator TTHA1359, N-terminal dom 98.46
d1zyba2147 Probable transcription regulator BT4300, N-termina 98.45
d1i5za2132 Catabolite gene activator protein, N-terminal doma 98.39
d1orsc_132 Potassium channel KVAP {Archaeon Aeropyrum pernix 98.35
d2oz6a2134 Cyclic AMP receptor-like protein Vfr {Pseudomonas 98.34
d1lnqa280 Potassium channel-related protein MthK {Archaeon M 98.27
d1o5la1129 CRP-like transcriptional regulator TM1171, N-termi 98.16
d2gaua2142 Transcriptional regulator PG0396, N-terminal domai 98.13
d1ft9a2132 CO-sensing protein CooA, N-terminal domain {Rhodos 97.93
d3e5ua2139 Chlorophenol reduction protein CprK {Desulfitobact 97.92
d2zcwa2112 Transcriptional regulator TTHA1359, N-terminal dom 97.77
d2h8pc157 Potassium channel protein {Streptomyces coelicolor 97.28
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: HCN pacemaker channel
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=6.5e-28  Score=232.38  Aligned_cols=192  Identities=26%  Similarity=0.437  Sum_probs=166.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhcccCchhHHhhcCCCCCCCCcccccCcchhhHHHHHHhh
Q psy1512         333 SAARKEFQAKLDGVKTYMRMRRVPNALQVKVIKWFDYLWLTQKCSDEEKAVSCLPGPGSSSTKLVHGGQYELEEIAIVSN  412 (679)
Q Consensus       333 ~~~~~~~~~~~~~l~~~m~~~~lp~~l~~rv~~y~~~~w~~~~~~~~~~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~n  412 (679)
                      |+.+.+|+++++.+++||+.+++|++|+.||++||+|.|+ +++.+++++++.+                          
T Consensus         1 ds~~~~f~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~~~~i~~~l--------------------------   53 (193)
T d1q3ea_           1 DSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGEL--------------------------   53 (193)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCHHHHHHHS--------------------------
T ss_pred             ChhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh-cccccHHHHHHHC--------------------------
Confidence            4578999999999999999999999999999999999996 4677888888776                          


Q ss_pred             ccCccccccCCCccccccCCCcccCcchHHHHHHHhhhhhhccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCee
Q psy1512         413 QATPNQVKYGSGPLYMSANGPKVVPDKLKAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRR  492 (679)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Lr~ei~~~~~~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r  492 (679)
                                              |+.||.++..+++.++|+++|+|+++++.++..|+..|+++.|.|||+|+++||+ 
T Consensus        54 ------------------------p~~l~~~i~~~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~g~~I~~~g~~-  108 (193)
T d1q3ea_          54 ------------------------NGPLREEIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTI-  108 (193)
T ss_dssp             ------------------------CHHHHHHHHHHHTHHHHHHCHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSB-
T ss_pred             ------------------------CcchhHHHHHHHHHHHHhcchHHHhhhHHHHHHHHHHHHHHhhccCceecccCCC-
Confidence                                    9999999999999999999999999999999999999999999999999999999 


Q ss_pred             eeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHHHHHHHHhhhccCcccCCCCCCCCCCCCcccccccccccceeecc
Q psy1512         493 TASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLS  572 (679)
Q Consensus       493 ~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~atv~A~~~~~l~~L~  572 (679)
                              .+.+|+|.+|.+....+..               .......|+..+..+++.+.+|+++++|.++|+++.|+
T Consensus       109 --------~~~ly~i~~G~v~v~~~~~---------------~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~  165 (193)
T d1q3ea_         109 --------GKKMYFIQHGVVSVLTKGN---------------KEMKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLS  165 (193)
T ss_dssp             --------CCEEEEEEECCEEEEC-CC---------------CEEEECTTCEECHHHHHHCSBCSSEEEESSCEEEEEEE
T ss_pred             --------CcceeEeeeeeEEeecCCc---------------ceeeeccceeeeeeeccCCCcccccceecCceEEEEEe
Confidence                    7899999888763221100               01112233333344677899999999999999999999


Q ss_pred             cchhHHHhhcChhHhhhhHHHHHHHhh
Q psy1512         573 KTDMWDVLKEYPAARVRLESIAVKRLQ  599 (679)
Q Consensus       573 r~~f~~il~~~P~~~~~l~~~~~~rl~  599 (679)
                      +++|.++++++|++++.+...+.+|++
T Consensus       166 ~~~f~~ll~~~p~~~~~~~~~~~~RL~  192 (193)
T d1q3ea_         166 VDNFNEVLEEYPMMRRAFETVAIDRLD  192 (193)
T ss_dssp             HHHHHHHHHHSGGGHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999886
>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Back     information, alignment and structure
>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Back     information, alignment and structure
>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Back     information, alignment and structure
>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} Back     information, alignment and structure
>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} Back     information, alignment and structure
>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Back     information, alignment and structure
>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Back     information, alignment and structure
>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Back     information, alignment and structure
>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} Back     information, alignment and structure
>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} Back     information, alignment and structure
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure